Query psy16863
Match_columns 1075
No_of_seqs 632 out of 4152
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 23:59:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2.4E-57 5.3E-62 517.3 50.3 530 350-935 40-619 (1051)
2 KOG3513|consensus 100.0 2.9E-54 6.3E-59 492.2 66.8 686 164-931 61-816 (1051)
3 KOG4221|consensus 100.0 1.2E-41 2.6E-46 384.7 45.0 527 243-841 42-610 (1381)
4 KOG4221|consensus 100.0 9.6E-40 2.1E-44 369.4 52.5 610 138-841 44-710 (1381)
5 KOG4222|consensus 100.0 1.8E-40 4E-45 373.1 26.8 436 446-933 30-514 (1281)
6 KOG4222|consensus 100.0 1.5E-39 3.2E-44 365.8 25.8 447 348-842 30-511 (1281)
7 TIGR00864 PCC polycystin catio 100.0 8.3E-27 1.8E-31 290.0 69.5 822 38-1023 870-1780(2740)
8 TIGR00864 PCC polycystin catio 100.0 4.4E-24 9.5E-29 266.1 76.9 885 5-1033 923-1876(2740)
9 KOG4194|consensus 100.0 3E-28 6.5E-33 256.9 22.8 280 134-443 502-799 (873)
10 KOG4194|consensus 100.0 1.9E-27 4.1E-32 250.9 23.6 272 544-841 497-797 (873)
11 PHA02785 IL-beta-binding prote 100.0 1.4E-26 2.9E-31 250.1 28.4 236 662-919 38-318 (326)
12 PHA02785 IL-beta-binding prote 99.9 2.7E-24 5.9E-29 232.2 28.0 250 359-635 36-319 (326)
13 KOG3515|consensus 99.9 2.8E-24 6.1E-29 241.2 27.0 605 253-925 18-686 (741)
14 KOG3515|consensus 99.9 1.3E-23 2.8E-28 235.9 28.4 616 142-834 15-683 (741)
15 PHA02826 IL-1 receptor-like pr 99.8 3.4E-18 7.3E-23 172.2 17.7 154 755-918 29-213 (227)
16 cd05762 Ig8_MLCK Eighth immuno 99.7 1.8E-16 3.9E-21 137.9 13.6 94 749-843 1-94 (98)
17 PHA02826 IL-1 receptor-like pr 99.7 7E-16 1.5E-20 155.5 19.8 167 249-428 29-211 (227)
18 cd05762 Ig8_MLCK Eighth immuno 99.7 1.1E-15 2.3E-20 133.0 13.6 95 350-444 1-95 (98)
19 cd05892 Ig_Myotilin_C C-termin 99.6 8E-16 1.7E-20 125.6 10.1 74 766-839 1-75 (75)
20 cd05851 Ig3_Contactin-1 Third 99.6 1.4E-15 3E-20 129.7 10.2 88 748-840 1-88 (88)
21 cd05893 Ig_Palladin_C C-termin 99.6 3.5E-15 7.5E-20 122.1 9.9 74 766-839 1-75 (75)
22 PF07679 I-set: Immunoglobulin 99.6 1.2E-14 2.7E-19 126.0 13.6 90 749-839 1-90 (90)
23 cd05737 Ig_Myomesin_like_C C-t 99.6 8.1E-15 1.8E-19 126.7 11.9 83 757-839 10-92 (92)
24 cd05747 Ig5_Titin_like M5, fif 99.6 1.2E-14 2.6E-19 125.8 12.2 90 747-837 2-91 (92)
25 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.8E-14 3.8E-19 122.1 12.8 82 757-839 4-86 (86)
26 cd04975 Ig4_SCFR_like Fourth i 99.6 1.3E-14 2.7E-19 126.2 11.7 86 756-841 11-101 (101)
27 cd05744 Ig_Myotilin_C_like Imm 99.6 1.5E-14 3.2E-19 119.1 10.5 74 766-839 1-75 (75)
28 cd05852 Ig5_Contactin-1 Fifth 99.6 8.6E-15 1.9E-19 119.2 8.9 73 763-839 1-73 (73)
29 cd05865 Ig1_NCAM-1 First immun 99.6 2.3E-14 5.1E-19 123.5 11.7 85 755-839 7-95 (96)
30 cd05745 Ig3_Peroxidasin Third 99.5 1.9E-14 4.1E-19 118.6 8.7 74 762-839 1-74 (74)
31 cd05735 Ig8_DSCAM Eight immuno 99.5 6.7E-14 1.5E-18 119.2 11.8 81 763-843 1-85 (88)
32 PF07679 I-set: Immunoglobulin 99.5 9E-14 1.9E-18 120.6 12.8 90 350-439 1-90 (90)
33 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.7E-14 5.8E-19 112.9 8.6 66 766-840 1-66 (67)
34 cd05728 Ig4_Contactin-2-like F 99.5 3.3E-14 7.2E-19 120.7 9.8 84 751-839 2-85 (85)
35 cd05859 Ig4_PDGFR-alpha Fourth 99.5 4.6E-14 9.9E-19 123.0 10.7 85 757-841 12-101 (101)
36 cd05747 Ig5_Titin_like M5, fif 99.5 9.6E-14 2.1E-18 120.1 12.6 90 348-437 2-91 (92)
37 cd05723 Ig4_Neogenin Fourth im 99.5 5.6E-14 1.2E-18 114.5 10.1 71 765-839 1-71 (71)
38 cd05854 Ig6_Contactin-2 Sixth 99.5 1.1E-13 2.3E-18 116.9 11.9 80 764-843 1-85 (85)
39 cd05851 Ig3_Contactin-1 Third 99.5 7.9E-14 1.7E-18 118.9 11.0 88 349-440 1-88 (88)
40 cd04972 Ig_TrkABC_d4 Fourth do 99.5 1.2E-13 2.7E-18 118.8 12.1 86 753-839 5-90 (90)
41 cd05868 Ig4_NrCAM Fourth immun 99.5 8.1E-14 1.8E-18 115.1 10.3 75 763-839 1-75 (76)
42 cd05867 Ig4_L1-CAM_like Fourth 99.5 1.1E-13 2.3E-18 114.8 11.0 75 763-839 1-75 (76)
43 cd05891 Ig_M-protein_C C-termi 99.5 1.4E-13 3E-18 118.6 11.8 83 757-839 10-92 (92)
44 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1.4E-13 3E-18 120.6 11.8 90 748-839 2-98 (98)
45 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 2.5E-13 5.5E-18 115.0 12.7 82 358-439 4-86 (86)
46 cd05748 Ig_Titin_like Immunogl 99.5 1.4E-13 3E-18 113.7 10.8 74 765-839 1-74 (74)
47 cd04975 Ig4_SCFR_like Fourth i 99.5 1.5E-13 3.2E-18 119.5 11.4 85 357-441 11-101 (101)
48 cd04968 Ig3_Contactin_like Thi 99.5 1.3E-13 2.9E-18 118.3 10.5 88 748-840 1-88 (88)
49 cd05869 Ig5_NCAM-1 Fifth immun 99.5 2.3E-13 4.9E-18 119.1 12.1 91 748-839 2-97 (97)
50 cd05730 Ig3_NCAM-1_like Third 99.5 1.8E-13 3.8E-18 119.6 11.5 83 756-841 11-94 (95)
51 cd05863 Ig2_VEGFR-3 Second imm 99.5 1.2E-13 2.7E-18 109.1 9.3 65 864-928 1-66 (67)
52 cd05857 Ig2_FGFR Second immuno 99.5 2.3E-13 5E-18 116.2 11.7 81 759-839 5-85 (85)
53 cd05855 Ig_TrkB_d5 Fifth domai 99.5 1.4E-13 3E-18 112.5 9.5 72 767-838 2-77 (79)
54 cd05737 Ig_Myomesin_like_C C-t 99.5 3.7E-13 8.1E-18 116.3 12.6 83 357-439 9-92 (92)
55 cd05853 Ig6_Contactin-4 Sixth 99.5 1.6E-13 3.5E-18 113.9 9.3 80 764-843 1-85 (85)
56 cd05864 Ig2_VEGFR-2 Second imm 99.5 1.2E-13 2.5E-18 110.9 7.9 69 766-840 1-69 (70)
57 cd05866 Ig1_NCAM-2 First immun 99.5 4.9E-13 1.1E-17 113.9 12.0 85 753-839 5-91 (92)
58 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 3.9E-13 8.4E-18 111.8 11.0 72 767-838 2-79 (81)
59 cd05732 Ig5_NCAM-1_like Fifth 99.5 3.7E-13 8E-18 118.1 11.4 90 748-839 2-96 (96)
60 cd04969 Ig5_Contactin_like Fif 99.5 2.2E-13 4.7E-18 112.1 9.2 73 763-839 1-73 (73)
61 cd05743 Ig_Perlecan_D2_like Im 99.5 3.9E-13 8.4E-18 112.0 10.7 77 763-840 1-77 (78)
62 cd05892 Ig_Myotilin_C C-termin 99.5 4.5E-13 9.7E-18 109.4 10.2 73 367-439 1-75 (75)
63 cd05760 Ig2_PTK7 Second immuno 99.5 4.4E-13 9.5E-18 111.2 10.1 73 766-841 1-74 (77)
64 cd04976 Ig2_VEGFR Second immun 99.5 2.7E-13 5.8E-18 110.2 8.6 70 766-840 1-70 (71)
65 cd04978 Ig4_L1-NrCAM_like Four 99.5 4.7E-13 1E-17 111.6 10.3 75 763-839 1-75 (76)
66 cd07693 Ig1_Robo First immunog 99.5 7.4E-13 1.6E-17 117.7 12.2 92 748-839 1-99 (100)
67 cd05848 Ig1_Contactin-5 First 99.5 8.8E-13 1.9E-17 114.0 12.2 82 749-833 2-87 (94)
68 cd05852 Ig5_Contactin-1 Fifth 99.4 3.6E-13 7.7E-18 109.7 9.0 73 364-439 1-73 (73)
69 cd04972 Ig_TrkABC_d4 Fourth do 99.4 1.2E-12 2.6E-17 112.8 12.6 86 354-439 5-90 (90)
70 cd05746 Ig4_Peroxidasin Fourth 99.4 2.3E-13 5E-18 110.3 7.6 68 766-837 1-68 (69)
71 cd04970 Ig6_Contactin_like Six 99.4 7.3E-13 1.6E-17 112.7 11.0 80 764-843 1-85 (85)
72 cd05773 Ig8_hNephrin_like Eigh 99.4 1.2E-12 2.7E-17 116.4 12.6 97 747-843 3-108 (109)
73 cd05745 Ig3_Peroxidasin Third 99.4 4.7E-13 1E-17 110.3 9.2 74 363-439 1-74 (74)
74 cd05893 Ig_Palladin_C C-termin 99.4 8.3E-13 1.8E-17 108.1 10.3 73 367-439 1-75 (75)
75 cd05866 Ig1_NCAM-2 First immun 99.4 1.8E-12 3.8E-17 110.5 12.5 85 354-439 5-91 (92)
76 cd05868 Ig4_NrCAM Fourth immun 99.4 7E-13 1.5E-17 109.6 9.5 68 861-928 1-76 (76)
77 cd05859 Ig4_PDGFR-alpha Fourth 99.4 1E-12 2.2E-17 114.6 10.6 84 358-441 12-101 (101)
78 cd05867 Ig4_L1-CAM_like Fourth 99.4 1E-12 2.2E-17 109.0 10.1 68 861-928 1-76 (76)
79 cd05865 Ig1_NCAM-1 First immun 99.4 2E-12 4.4E-17 111.5 12.2 85 355-439 6-95 (96)
80 cd05728 Ig4_Contactin-2-like F 99.4 1.1E-12 2.5E-17 111.2 10.4 84 352-439 2-85 (85)
81 cd05748 Ig_Titin_like Immunogl 99.4 1.9E-12 4.1E-17 106.9 11.4 74 366-439 1-74 (74)
82 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1.2E-12 2.5E-17 105.4 9.8 68 763-837 1-68 (69)
83 cd05870 Ig5_NCAM-2 Fifth immun 99.4 2.1E-12 4.6E-17 113.2 12.1 90 349-439 2-98 (98)
84 cd05876 Ig3_L1-CAM Third immun 99.4 5.7E-13 1.2E-17 108.6 7.8 70 766-839 1-70 (71)
85 cd05849 Ig1_Contactin-1 First 99.4 2E-12 4.4E-17 111.1 11.6 81 748-833 1-86 (93)
86 cd05850 Ig1_Contactin-2 First 99.4 2.8E-12 6.1E-17 110.9 12.6 80 749-833 2-87 (94)
87 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2.5E-12 5.4E-17 112.5 12.4 91 349-439 2-97 (97)
88 cd05726 Ig4_Robo Fhird immunog 99.4 1.2E-12 2.7E-17 112.7 9.9 78 763-844 1-86 (90)
89 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.4E-12 2.9E-17 104.8 9.4 65 864-928 1-69 (70)
90 cd04977 Ig1_NCAM-1_like First 99.4 2.5E-12 5.4E-17 110.8 11.4 83 755-838 7-91 (92)
91 cd05730 Ig3_NCAM-1_like Third 99.4 2.5E-12 5.4E-17 112.3 11.6 83 357-441 11-94 (95)
92 cd05763 Ig_1 Subgroup of the i 99.4 1E-12 2.2E-17 108.8 8.5 71 766-839 1-74 (75)
93 cd05735 Ig8_DSCAM Eight immuno 99.4 4E-12 8.6E-17 108.3 12.2 81 364-444 1-86 (88)
94 cd05723 Ig4_Neogenin Fourth im 99.4 3E-12 6.6E-17 104.3 10.7 71 366-439 1-71 (71)
95 cd05732 Ig5_NCAM-1_like Fifth 99.4 3.5E-12 7.6E-17 111.9 11.7 90 349-439 2-96 (96)
96 cd05743 Ig_Perlecan_D2_like Im 99.4 3.7E-12 8E-17 106.1 11.0 76 364-439 1-76 (78)
97 cd04968 Ig3_Contactin_like Thi 99.4 3.3E-12 7E-17 109.6 10.9 88 349-440 1-88 (88)
98 cd05744 Ig_Myotilin_C_like Imm 99.4 4.2E-12 9.2E-17 104.5 11.0 73 367-439 1-75 (75)
99 cd04973 Ig1_FGFR First immunog 99.4 2.1E-12 4.5E-17 107.7 9.1 78 756-839 2-79 (79)
100 cd05758 Ig5_KIRREL3-like Fifth 99.4 5.4E-12 1.2E-16 110.6 12.0 89 748-837 2-97 (98)
101 cd05858 Ig3_FGFR-2 Third immun 99.4 2.7E-12 5.8E-17 110.4 9.9 77 763-839 1-89 (90)
102 cd04974 Ig3_FGFR Third immunog 99.4 2.3E-12 5E-17 110.6 9.5 77 763-839 1-89 (90)
103 cd05740 Ig_CEACAM_D4 Fourth im 99.4 4.2E-12 9.1E-17 108.6 10.9 80 755-839 10-90 (91)
104 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2E-12 4.4E-17 106.3 8.5 70 766-839 1-73 (74)
105 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 4.3E-12 9.4E-17 102.1 10.2 63 861-925 1-68 (69)
106 cd05891 Ig_M-protein_C C-termi 99.4 7.8E-12 1.7E-16 107.7 12.4 84 356-439 8-92 (92)
107 cd05725 Ig3_Robo Third immunog 99.4 2.4E-12 5.1E-17 104.6 8.6 69 766-839 1-69 (69)
108 cd05764 Ig_2 Subgroup of the i 99.4 4.1E-12 8.8E-17 105.0 9.8 73 763-839 1-74 (74)
109 cd04976 Ig2_VEGFR Second immun 99.4 3.4E-12 7.4E-17 103.7 9.1 65 864-928 1-70 (71)
110 cd05854 Ig6_Contactin-2 Sixth 99.4 8.3E-12 1.8E-16 105.4 11.7 79 365-443 1-85 (85)
111 cd07693 Ig1_Robo First immunog 99.4 7.5E-12 1.6E-16 111.1 12.2 91 349-439 1-99 (100)
112 cd05722 Ig1_Neogenin First imm 99.4 5.2E-12 1.1E-16 110.1 10.8 86 751-838 2-94 (95)
113 cd05749 Ig2_Tyro3_like Second 99.4 3.4E-12 7.4E-17 105.8 8.9 73 752-833 2-75 (81)
114 cd05857 Ig2_FGFR Second immuno 99.3 9.7E-12 2.1E-16 106.2 11.6 81 359-439 4-85 (85)
115 cd07702 Ig2_VEGFR-1 Second imm 99.3 4.1E-12 9E-17 102.0 8.5 69 766-839 1-70 (72)
116 cd04969 Ig5_Contactin_like Fif 99.3 5.7E-12 1.2E-16 103.6 9.6 73 364-439 1-73 (73)
117 cd05773 Ig8_hNephrin_like Eigh 99.3 6.5E-12 1.4E-16 111.8 10.7 72 860-931 22-108 (109)
118 cd05856 Ig2_FGFRL1-like Second 99.3 5.6E-12 1.2E-16 107.0 9.4 78 759-839 5-82 (82)
119 cd05736 Ig2_Follistatin_like S 99.3 6.8E-12 1.5E-16 104.2 9.6 74 766-840 1-74 (76)
120 cd05750 Ig_Pro_neuregulin Immu 99.3 5.7E-12 1.2E-16 104.7 9.1 71 766-836 1-74 (75)
121 cd05724 Ig2_Robo Second immuno 99.3 9.3E-12 2E-16 106.7 10.2 79 756-838 4-85 (86)
122 cd05853 Ig6_Contactin-4 Sixth 99.3 9.5E-12 2.1E-16 103.4 9.5 79 365-443 1-85 (85)
123 cd05731 Ig3_L1-CAM_like Third 99.3 5.1E-12 1.1E-16 103.7 7.8 70 766-839 1-70 (71)
124 cd04973 Ig1_FGFR First immunog 99.3 1.2E-11 2.7E-16 103.1 10.2 78 357-439 2-79 (79)
125 cd05855 Ig_TrkB_d5 Fifth domai 99.3 1.3E-11 2.8E-16 100.9 9.8 70 369-438 3-77 (79)
126 cd05746 Ig4_Peroxidasin Fourth 99.3 8.8E-12 1.9E-16 101.0 8.2 68 367-437 1-68 (69)
127 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 2E-11 4.3E-16 101.6 10.4 71 368-438 2-79 (81)
128 cd05848 Ig1_Contactin-5 First 99.3 3E-11 6.5E-16 104.4 11.9 81 350-432 2-86 (94)
129 cd04978 Ig4_L1-NrCAM_like Four 99.3 1.4E-11 2.9E-16 102.7 9.4 74 364-439 1-75 (76)
130 cd05749 Ig2_Tyro3_like Second 99.3 1.5E-11 3.2E-16 102.0 9.4 63 857-921 9-75 (81)
131 cd05765 Ig_3 Subgroup of the i 99.3 1.3E-11 2.8E-16 104.4 8.9 77 763-839 1-81 (81)
132 cd04967 Ig1_Contactin First Ig 99.3 3.4E-11 7.4E-16 103.9 10.9 82 749-833 2-87 (91)
133 cd05760 Ig2_PTK7 Second immuno 99.3 3E-11 6.5E-16 100.2 9.5 73 367-441 1-74 (77)
134 cd05849 Ig1_Contactin-1 First 99.2 6.7E-11 1.5E-15 101.7 11.6 80 349-432 1-85 (93)
135 cd05850 Ig1_Contactin-2 First 99.2 9.9E-11 2.1E-15 101.3 12.7 79 350-432 2-86 (94)
136 cd05756 Ig1_IL1R_like First im 99.2 2.3E-11 4.9E-16 104.6 8.5 80 757-839 8-94 (94)
137 cd05758 Ig5_KIRREL3-like Fifth 99.2 8.1E-11 1.8E-15 103.1 12.2 88 349-437 2-97 (98)
138 cd04970 Ig6_Contactin_like Six 99.2 5.1E-11 1.1E-15 101.4 10.6 79 365-443 1-85 (85)
139 cd05898 Ig5_KIRREL3 Fifth immu 99.2 1E-10 2.2E-15 100.0 12.1 89 748-837 2-97 (98)
140 cd04977 Ig1_NCAM-1_like First 99.2 9.6E-11 2.1E-15 100.9 12.2 83 355-438 6-91 (92)
141 cd05726 Ig4_Robo Fhird immunog 99.2 4.3E-11 9.4E-16 103.0 10.0 78 364-444 1-86 (90)
142 cd05740 Ig_CEACAM_D4 Fourth im 99.2 6.7E-11 1.5E-15 101.2 10.9 79 357-439 11-90 (91)
143 cd05733 Ig6_L1-CAM_like Sixth 99.2 2.8E-11 6E-16 100.4 7.8 65 766-833 1-71 (77)
144 cd05876 Ig3_L1-CAM Third immun 99.2 3.5E-11 7.6E-16 98.0 8.2 70 367-439 1-70 (71)
145 cd05729 Ig2_FGFR_like Second i 99.2 1.2E-10 2.5E-15 99.8 11.9 81 759-839 5-85 (85)
146 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.8E-10 4E-15 108.4 14.3 117 309-429 2-132 (139)
147 cd05736 Ig2_Follistatin_like S 99.2 6.1E-11 1.3E-15 98.5 9.4 74 367-440 1-74 (76)
148 cd05731 Ig3_L1-CAM_like Third 99.2 5.7E-11 1.2E-15 97.4 9.0 64 864-927 1-70 (71)
149 cd05875 Ig6_hNeurofascin_like 99.2 6.3E-11 1.4E-15 97.9 9.2 66 766-834 1-72 (77)
150 cd05763 Ig_1 Subgroup of the i 99.2 6.2E-11 1.3E-15 98.1 9.1 71 367-439 1-74 (75)
151 cd04974 Ig3_FGFR Third immunog 99.2 4.2E-11 9E-16 102.8 8.2 77 364-440 1-90 (90)
152 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 6.2E-11 1.3E-15 97.5 8.8 70 367-439 1-73 (74)
153 cd05874 Ig6_NrCAM Sixth immuno 99.2 5.7E-11 1.2E-15 98.1 8.5 66 766-834 1-72 (77)
154 cd05856 Ig2_FGFRL1-like Second 99.2 9.3E-11 2E-15 99.5 9.9 79 359-439 4-82 (82)
155 cd05764 Ig_2 Subgroup of the i 99.2 9.7E-11 2.1E-15 96.7 9.7 73 364-439 1-74 (74)
156 cd05742 Ig1_VEGFR_like First i 99.2 6.2E-11 1.3E-15 100.6 8.7 77 763-839 1-83 (84)
157 cd05725 Ig3_Robo Third immunog 99.2 7.1E-11 1.5E-15 95.9 8.7 69 367-439 1-69 (69)
158 cd05895 Ig_Pro_neuregulin-1 Im 99.2 8.6E-11 1.9E-15 97.5 9.3 70 766-836 1-75 (76)
159 cd05858 Ig3_FGFR-2 Third immun 99.2 1E-10 2.3E-15 100.5 9.9 76 364-439 1-89 (90)
160 cd05722 Ig1_Neogenin First imm 99.2 1.7E-10 3.6E-15 100.6 11.3 84 352-438 2-94 (95)
161 cd07702 Ig2_VEGFR-1 Second imm 99.2 1.1E-10 2.5E-15 93.6 9.0 69 367-439 1-70 (72)
162 cd07701 Ig1_Necl-3 First (N-te 99.2 1.5E-10 3.2E-15 100.0 10.3 84 755-839 4-95 (95)
163 cd05750 Ig_Pro_neuregulin Immu 99.2 1.2E-10 2.5E-15 96.8 9.2 70 367-436 1-74 (75)
164 cd05734 Ig7_DSCAM Seventh immu 99.2 8.4E-11 1.8E-15 98.4 7.8 69 766-838 1-78 (79)
165 cd05752 Ig1_FcgammaR_like Frst 99.1 1.3E-10 2.8E-15 95.8 7.7 66 750-827 2-68 (78)
166 cd05882 Ig1_Necl-1 First (N-te 99.1 6E-10 1.3E-14 95.7 11.7 71 756-826 5-83 (95)
167 cd05724 Ig2_Robo Second immuno 99.1 2.9E-10 6.4E-15 97.3 9.8 80 557-641 3-84 (86)
168 cd05756 Ig1_IL1R_like First im 99.1 1.3E-10 2.9E-15 99.9 7.5 80 358-439 8-94 (94)
169 cd05873 Ig_Sema4D_like Immunog 99.1 5.7E-10 1.2E-14 93.1 10.3 68 755-828 3-71 (87)
170 cd05765 Ig_3 Subgroup of the i 99.1 3.4E-10 7.5E-15 95.6 8.5 75 364-439 1-81 (81)
171 cd05895 Ig_Pro_neuregulin-1 Im 99.1 5.6E-10 1.2E-14 92.6 9.6 70 367-436 1-75 (76)
172 cd05757 Ig2_IL1R_like Second i 99.1 4.2E-10 9.1E-15 95.9 8.8 78 758-840 5-87 (92)
173 cd05898 Ig5_KIRREL3 Fifth immu 99.1 1.5E-09 3.3E-14 92.8 12.0 88 349-437 2-97 (98)
174 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 8.8E-10 1.9E-14 92.9 10.4 77 763-840 1-83 (84)
175 cd04967 Ig1_Contactin First Ig 99.1 9.7E-10 2.1E-14 94.8 10.9 81 350-432 2-86 (91)
176 cd05742 Ig1_VEGFR_like First i 99.1 5.7E-10 1.2E-14 94.6 9.0 76 364-439 1-83 (84)
177 cd05733 Ig6_L1-CAM_like Sixth 99.1 3.9E-10 8.4E-15 93.5 7.7 64 367-432 1-70 (77)
178 cd05754 Ig3_Perlecan_like Thir 99.1 5.6E-10 1.2E-14 95.0 8.7 76 755-837 8-84 (85)
179 cd05752 Ig1_FcgammaR_like Frst 99.1 5E-10 1.1E-14 92.3 7.8 66 351-427 2-68 (78)
180 cd05874 Ig6_NrCAM Sixth immuno 99.0 8.7E-10 1.9E-14 91.1 8.8 65 367-433 1-71 (77)
181 cd05875 Ig6_hNeurofascin_like 99.0 1.2E-09 2.6E-14 90.3 9.3 65 367-433 1-71 (77)
182 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 1.6E-09 3.5E-14 91.3 10.2 76 364-439 1-82 (84)
183 cd05729 Ig2_FGFR_like Second i 99.0 3.8E-09 8.2E-14 90.3 11.7 81 359-439 4-85 (85)
184 cd05771 IgC_Tapasin_R Tapasin- 99.0 5.4E-09 1.2E-13 98.5 13.7 119 494-632 2-132 (139)
185 cd07701 Ig1_Necl-3 First (N-te 99.0 2.8E-09 6.1E-14 92.1 10.7 83 356-439 4-95 (95)
186 cd05873 Ig_Sema4D_like Immunog 99.0 3.1E-09 6.6E-14 88.7 10.1 68 356-428 3-71 (87)
187 cd04979 Ig_Semaphorin_C Immuno 99.0 2.5E-09 5.3E-14 91.9 9.9 81 756-840 4-87 (89)
188 cd05754 Ig3_Perlecan_like Thir 98.9 4E-09 8.7E-14 89.7 9.0 78 354-437 6-84 (85)
189 cd05717 Ig1_Necl-1-3_like Firs 98.9 6.6E-09 1.4E-13 90.5 10.3 83 756-839 5-95 (95)
190 cd05882 Ig1_Necl-1 First (N-te 98.9 1.2E-08 2.6E-13 87.6 11.7 81 357-438 5-94 (95)
191 cd05862 Ig1_VEGFR First immuno 98.9 6.3E-09 1.4E-13 88.0 8.9 78 763-840 1-85 (86)
192 cd04979 Ig_Semaphorin_C Immuno 98.9 7.1E-09 1.5E-13 89.0 9.1 78 357-439 4-86 (89)
193 cd05734 Ig7_DSCAM Seventh immu 98.9 4.6E-09 1E-13 87.8 7.6 70 568-642 1-78 (79)
194 cd05753 Ig2_FcgammaR_like Seco 98.9 5.6E-09 1.2E-13 87.6 7.9 65 759-832 10-75 (83)
195 cd05757 Ig2_IL1R_like Second i 98.9 5.3E-09 1.1E-13 89.2 7.9 77 359-439 5-86 (92)
196 PF13895 Ig_2: Immunoglobulin 98.9 2.1E-08 4.5E-13 84.6 11.0 70 758-838 9-79 (80)
197 cd05727 Ig2_Contactin-2-like S 98.9 4.5E-09 9.8E-14 88.9 6.6 73 756-831 11-86 (96)
198 cd07690 Ig1_CD4 First immunogl 98.9 1.2E-08 2.5E-13 87.0 8.8 73 759-831 3-91 (94)
199 cd05897 Ig2_IL1R2_like Second 98.8 1.1E-08 2.4E-13 86.8 8.4 73 758-832 5-82 (95)
200 cd05871 Ig_Semaphorin_classIII 98.8 2E-08 4.4E-13 85.7 10.0 77 758-840 6-89 (91)
201 cd05860 Ig4_SCFR Fourth immuno 98.8 3.7E-08 7.9E-13 83.3 11.1 84 757-840 12-100 (101)
202 smart00410 IG_like Immunoglobu 98.8 6.1E-08 1.3E-12 82.9 12.7 82 757-839 3-85 (86)
203 smart00409 IG Immunoglobulin. 98.8 6.1E-08 1.3E-12 82.9 12.7 82 757-839 3-85 (86)
204 smart00408 IGc2 Immunoglobulin 98.8 1.5E-08 3.2E-13 80.8 8.2 63 762-829 1-63 (63)
205 cd05845 Ig2_L1-CAM_like Second 98.8 7.2E-09 1.6E-13 87.5 6.5 72 755-830 10-84 (95)
206 cd05753 Ig2_FcgammaR_like Seco 98.8 1.8E-08 3.8E-13 84.6 8.1 66 358-431 8-74 (83)
207 cd05727 Ig2_Contactin-2-like S 98.8 1.3E-08 2.7E-13 86.3 7.0 72 357-431 11-86 (96)
208 PF13895 Ig_2: Immunoglobulin 98.8 4.1E-08 9E-13 82.7 9.8 71 856-927 9-80 (80)
209 smart00409 IG Immunoglobulin. 98.8 1.3E-07 2.9E-12 80.7 12.7 83 357-439 2-85 (86)
210 smart00410 IG_like Immunoglobu 98.8 1.3E-07 2.9E-12 80.7 12.7 83 357-439 2-85 (86)
211 cd05717 Ig1_Necl-1-3_like Firs 98.7 7.4E-08 1.6E-12 83.9 10.6 82 357-439 5-95 (95)
212 cd07690 Ig1_CD4 First immunogl 98.7 3.2E-08 6.8E-13 84.3 7.8 73 359-431 2-91 (94)
213 cd05885 Ig2_Necl-4 Second immu 98.7 3.8E-08 8.2E-13 80.1 7.6 64 766-831 2-69 (80)
214 PF00047 ig: Immunoglobulin do 98.7 2.7E-08 5.8E-13 79.4 6.2 62 763-824 1-64 (64)
215 cd05862 Ig1_VEGFR First immuno 98.7 6.7E-08 1.5E-12 81.7 8.6 77 364-440 1-85 (86)
216 cd05872 Ig_Sema4B_like Immunog 98.7 8.4E-08 1.8E-12 79.4 8.9 78 756-840 4-81 (85)
217 cd05881 Ig1_Necl-2 First (N-te 98.7 2.3E-07 5E-12 78.9 11.6 71 357-427 5-84 (95)
218 cd05860 Ig4_SCFR Fourth immuno 98.7 1.7E-07 3.6E-12 79.3 10.6 84 357-440 11-100 (101)
219 cd05881 Ig1_Necl-2 First (N-te 98.7 2.1E-07 4.7E-12 79.1 11.2 72 756-827 5-84 (95)
220 smart00408 IGc2 Immunoglobulin 98.7 5.7E-08 1.2E-12 77.3 7.3 63 363-429 1-63 (63)
221 PF00047 ig: Immunoglobulin do 98.7 8.2E-08 1.8E-12 76.6 7.8 61 364-424 1-64 (64)
222 cd05759 Ig2_KIRREL3-like Secon 98.7 1.3E-07 2.8E-12 79.7 9.2 67 765-831 1-72 (82)
223 cd05871 Ig_Semaphorin_classIII 98.6 1.8E-07 3.9E-12 79.9 9.2 78 358-440 5-89 (91)
224 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 2.2E-07 4.7E-12 78.8 8.8 79 359-439 10-104 (104)
225 cd05885 Ig2_Necl-4 Second immu 98.6 1.5E-07 3.3E-12 76.6 7.4 63 367-431 2-69 (80)
226 cd05845 Ig2_L1-CAM_like Second 98.6 1.6E-07 3.5E-12 79.4 7.7 72 557-633 10-84 (95)
227 PHA03376 BARF1; Provisional 98.6 7E-07 1.5E-11 82.2 12.2 124 358-485 20-163 (221)
228 cd05897 Ig2_IL1R2_like Second 98.6 2.3E-07 5E-12 78.8 8.1 72 359-431 5-81 (95)
229 cd05872 Ig_Sema4B_like Immunog 98.6 2.8E-07 6.2E-12 76.3 8.4 78 357-440 4-81 (85)
230 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 3.6E-07 7.9E-12 77.5 8.9 80 757-839 9-104 (104)
231 cd05759 Ig2_KIRREL3-like Secon 98.5 1E-06 2.2E-11 74.3 10.1 73 366-438 1-79 (82)
232 cd05751 Ig1_LILRB1_like First 98.4 7.9E-07 1.7E-11 76.4 7.6 67 357-427 9-75 (91)
233 PF13927 Ig_3: Immunoglobulin 98.4 5.6E-07 1.2E-11 74.6 6.3 73 749-826 2-75 (75)
234 cd05713 Ig_MOG_like Immunoglob 98.4 3.6E-06 7.9E-11 74.1 11.5 86 150-235 1-99 (100)
235 cd04983 IgV_TCR_alpha_like Imm 98.4 1.5E-06 3.2E-11 78.2 9.0 75 755-829 5-94 (109)
236 cd05877 Ig_LP_like Immunoglobu 98.4 2.9E-06 6.2E-11 75.7 10.6 79 762-840 1-103 (106)
237 PHA03376 BARF1; Provisional 98.3 3.6E-05 7.8E-10 71.3 16.8 133 251-388 20-163 (221)
238 cd05879 Ig_P0 Immunoglobulin ( 98.3 4.4E-06 9.6E-11 74.6 10.7 82 756-837 6-112 (116)
239 cd05899 IgV_TCR_beta Immunoglo 98.3 1.8E-06 3.9E-11 77.5 8.1 73 755-828 5-95 (110)
240 cd05714 Ig_CSPGs_LP Immunoglob 98.3 4.1E-06 8.9E-11 74.7 10.2 80 762-841 1-104 (106)
241 cd05713 Ig_MOG_like Immunoglob 98.3 4.5E-06 9.7E-11 73.5 10.0 77 763-839 1-99 (100)
242 cd04983 IgV_TCR_alpha_like Imm 98.3 3.5E-06 7.7E-11 75.7 9.4 74 355-428 4-93 (109)
243 cd05883 Ig2_Necl-2 Second immu 98.3 5.2E-06 1.1E-10 67.9 8.7 75 766-840 2-80 (82)
244 cd00099 IgV Immunoglobulin var 98.3 3.4E-06 7.4E-11 75.2 8.1 71 759-829 2-91 (105)
245 cd05751 Ig1_LILRB1_like First 98.2 3E-06 6.5E-11 72.8 7.3 68 447-515 2-75 (91)
246 cd05899 IgV_TCR_beta Immunoglo 98.2 5.3E-06 1.2E-10 74.5 8.7 73 355-428 4-95 (110)
247 cd05879 Ig_P0 Immunoglobulin ( 98.2 1.5E-05 3.3E-10 71.2 11.1 76 356-431 5-106 (116)
248 PF13927 Ig_3: Immunoglobulin 98.2 2.7E-06 6E-11 70.4 5.9 73 350-426 2-75 (75)
249 cd05900 Ig_Aggrecan Immunoglob 98.2 9.4E-06 2E-10 71.9 9.4 79 762-840 1-109 (112)
250 cd05774 Ig_CEACAM_D1 First imm 98.2 9.6E-06 2.1E-10 70.9 9.3 70 357-429 6-94 (105)
251 cd05883 Ig2_Necl-2 Second immu 98.2 1.4E-05 3E-10 65.4 9.4 74 367-440 2-80 (82)
252 cd05774 Ig_CEACAM_D1 First imm 98.2 8.1E-06 1.8E-10 71.3 8.5 75 759-837 9-103 (105)
253 cd05718 Ig1_PVR_like First imm 98.2 1E-05 2.2E-10 71.1 9.2 76 764-839 1-97 (98)
254 cd00099 IgV Immunoglobulin var 98.1 9.8E-06 2.1E-10 72.3 8.7 70 360-429 2-91 (105)
255 cd04980 IgV_L_kappa Immunoglob 98.1 1.1E-05 2.3E-10 71.9 8.8 74 354-427 5-93 (106)
256 cd05900 Ig_Aggrecan Immunoglob 98.1 1.7E-05 3.7E-10 70.3 9.7 77 363-439 1-108 (112)
257 cd05880 Ig_EVA1 Immunoglobulin 98.1 1.8E-05 3.9E-10 71.2 9.9 75 356-430 5-104 (115)
258 cd05877 Ig_LP_like Immunoglobu 98.1 1.9E-05 4.2E-10 70.3 10.0 78 363-440 1-103 (106)
259 cd05714 Ig_CSPGs_LP Immunoglob 98.1 2.4E-05 5.3E-10 69.6 10.4 78 363-440 1-103 (106)
260 cd05718 Ig1_PVR_like First imm 98.1 2.3E-05 4.9E-10 68.8 10.0 75 365-439 1-97 (98)
261 cd05761 Ig2_Necl-1-4_like Seco 98.1 2.1E-05 4.6E-10 65.9 9.2 64 766-830 2-70 (82)
262 cd04982 IgV_TCR_gamma Immunogl 98.1 1.4E-05 3.1E-10 72.6 8.5 70 757-826 7-98 (116)
263 cd00098 IgC Immunoglobulin Con 98.1 1.1E-05 2.4E-10 70.3 7.3 70 761-830 11-87 (95)
264 cd05878 Ig_Aggrecan_like Immun 98.1 3E-05 6.4E-10 69.1 10.1 79 762-840 1-107 (110)
265 cd05741 Ig_CEACAM_D1_like Firs 98.0 1.3E-05 2.9E-10 69.3 7.4 65 763-831 1-83 (92)
266 KOG0613|consensus 98.0 2.6E-05 5.7E-10 93.3 11.9 254 664-917 243-517 (1205)
267 cd05711 Ig_FcalphaRI Immunoglo 98.0 1.6E-05 3.5E-10 68.5 7.4 70 355-425 6-75 (94)
268 cd07705 Ig2_Necl-1 Second immu 98.0 4.2E-05 9E-10 64.0 9.6 64 766-830 2-71 (83)
269 cd04982 IgV_TCR_gamma Immunogl 98.0 2.3E-05 5E-10 71.2 8.6 71 356-426 5-98 (116)
270 cd05755 Ig2_ICAM-1_like Second 98.0 2.8E-05 6.1E-10 66.5 8.4 73 758-830 11-87 (100)
271 cd05886 Ig1_Nectin-1_like Firs 98.0 5E-05 1.1E-09 65.6 9.9 75 765-839 2-98 (99)
272 cd05888 Ig1_Nectin-4_like Frst 98.0 4.6E-05 1E-09 66.7 9.9 75 765-839 2-99 (100)
273 cd05775 Ig_SLAM-CD84_like_N N- 98.0 2.6E-05 5.6E-10 67.8 8.2 70 761-831 2-87 (97)
274 cd05715 Ig_P0-like Immunoglobu 98.0 3.4E-05 7.5E-10 69.8 9.3 75 756-830 6-105 (116)
275 cd05878 Ig_Aggrecan_like Immun 98.0 5.2E-05 1.1E-09 67.5 10.1 87 150-236 2-107 (110)
276 cd05761 Ig2_Necl-1-4_like Seco 98.0 4.9E-05 1.1E-09 63.7 9.3 65 367-431 2-71 (82)
277 cd05880 Ig_EVA1 Immunoglobulin 98.0 7.1E-05 1.5E-09 67.4 10.6 82 143-225 6-103 (115)
278 cd04984 IgV_L_lambda Immunoglo 98.0 3.4E-05 7.4E-10 67.5 8.3 67 360-426 2-84 (98)
279 cd05715 Ig_P0-like Immunoglobu 98.0 5E-05 1.1E-09 68.8 9.7 75 356-430 5-105 (116)
280 cd05775 Ig_SLAM-CD84_like_N N- 97.9 3E-05 6.6E-10 67.4 7.7 78 362-439 2-96 (97)
281 cd05884 Ig2_Necl-3 Second immu 97.9 4.3E-05 9.3E-10 63.8 8.1 64 766-829 2-70 (83)
282 cd05755 Ig2_ICAM-1_like Second 97.9 4.9E-05 1.1E-09 65.1 8.5 74 356-430 8-87 (100)
283 cd05901 Ig_Versican Immunoglob 97.9 0.00012 2.7E-09 64.5 11.0 47 190-236 65-114 (117)
284 cd07705 Ig2_Necl-1 Second immu 97.9 0.00011 2.3E-09 61.5 10.1 65 367-431 2-72 (83)
285 cd05741 Ig_CEACAM_D1_like Firs 97.9 5E-05 1.1E-09 65.7 8.5 65 364-431 1-83 (92)
286 KOG0613|consensus 97.9 9.4E-05 2E-09 88.8 12.6 136 556-691 340-480 (1205)
287 cd04984 IgV_L_lambda Immunoglo 97.9 4.7E-05 1E-09 66.6 7.8 67 759-826 2-84 (98)
288 cd05902 Ig_Neurocan Immunoglob 97.9 9.7E-05 2.1E-09 65.1 9.5 87 150-236 2-107 (110)
289 PF07686 V-set: Immunoglobulin 97.8 0.00016 3.5E-09 65.6 11.2 73 755-827 8-101 (114)
290 PF07686 V-set: Immunoglobulin 97.8 0.00014 3E-09 66.0 10.6 73 355-427 7-101 (114)
291 cd04980 IgV_L_kappa Immunoglob 97.8 9.2E-05 2E-09 65.9 9.2 74 141-223 6-93 (106)
292 cd00098 IgC Immunoglobulin Con 97.8 5.8E-05 1.3E-09 65.7 7.6 69 362-430 11-87 (95)
293 cd05901 Ig_Versican Immunoglob 97.8 0.00027 5.8E-09 62.4 11.3 78 763-840 2-114 (117)
294 PHA02987 Ig domain OX-2-like p 97.8 0.00015 3.3E-09 68.1 10.2 87 756-842 23-124 (189)
295 cd05846 Ig1_MRC-OX-2_like Firs 97.8 0.0001 2.3E-09 64.2 8.6 77 763-839 1-96 (97)
296 cd05902 Ig_Neurocan Immunoglob 97.8 0.00022 4.8E-09 62.9 10.3 78 763-840 2-107 (110)
297 cd05887 Ig1_Nectin-3_like Firs 97.8 0.00019 4.2E-09 61.3 9.3 75 765-839 2-95 (96)
298 cd07706 IgV_TCR_delta Immunogl 97.7 0.00014 3.1E-09 65.9 8.9 72 755-826 6-93 (116)
299 cd07706 IgV_TCR_delta Immunogl 97.7 0.00017 3.7E-09 65.4 9.2 74 354-427 4-94 (116)
300 PHA03270 envelope glycoprotein 97.7 0.026 5.7E-07 60.0 25.6 177 299-489 173-363 (466)
301 PHA02987 Ig domain OX-2-like p 97.7 0.00021 4.6E-09 67.2 9.4 86 357-442 23-124 (189)
302 PRK14081 triple tyrosine motif 97.7 0.19 4.2E-06 58.3 51.8 457 252-783 107-612 (667)
303 cd05716 Ig_pIgR Immunoglobulin 97.7 0.00015 3.3E-09 63.4 8.1 69 759-827 3-86 (98)
304 cd05711 Ig_FcalphaRI Immunoglo 97.7 0.0002 4.3E-09 61.7 8.3 65 448-513 2-75 (94)
305 cd05888 Ig1_Nectin-4_like Frst 97.7 0.00051 1.1E-08 60.1 10.8 46 190-235 51-99 (100)
306 PHA03270 envelope glycoprotein 97.6 0.012 2.6E-07 62.4 22.2 122 360-488 138-264 (466)
307 cd05846 Ig1_MRC-OX-2_like Firs 97.6 0.00023 5.1E-09 62.0 8.2 69 565-633 1-87 (97)
308 PHA03269 envelope glycoprotein 97.6 0.0068 1.5E-07 65.0 20.1 168 308-489 289-473 (566)
309 cd07694 Ig2_CD4 Second immunog 97.6 0.00055 1.2E-08 55.9 9.0 64 358-427 8-73 (88)
310 cd05886 Ig1_Nectin-1_like Firs 97.6 0.00086 1.9E-08 58.0 10.9 46 190-235 51-98 (99)
311 cd05716 Ig_pIgR Immunoglobulin 97.6 0.0003 6.5E-09 61.6 8.0 70 359-428 2-87 (98)
312 cd05772 IgC_SIRP Signal-regula 97.6 0.0011 2.4E-08 58.7 11.4 72 358-430 15-94 (111)
313 cd07700 IgV_CD8_beta Immunoglo 97.6 0.00037 7.9E-09 62.0 8.5 70 561-630 2-94 (107)
314 cd05884 Ig2_Necl-3 Second immu 97.6 0.00052 1.1E-08 57.3 8.9 66 568-633 2-71 (83)
315 cd07700 IgV_CD8_beta Immunoglo 97.5 0.00034 7.3E-09 62.2 8.0 67 360-426 2-93 (107)
316 cd00096 Ig Immunoglobulin doma 97.5 0.00035 7.5E-09 56.6 7.6 63 766-828 1-66 (74)
317 PHA03273 envelope glycoprotein 97.5 0.012 2.5E-07 63.3 20.1 165 308-484 198-376 (486)
318 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.0007 1.5E-08 58.3 9.5 66 364-429 14-84 (93)
319 cd05720 Ig_CD8_alpha Immunoglo 97.5 0.00036 7.8E-09 61.5 7.7 67 360-426 2-90 (104)
320 cd05766 IgC_MHC_II_beta Class 97.5 0.0011 2.5E-08 56.8 10.4 69 362-430 12-85 (94)
321 cd05889 Ig1_DNAM-1_like First 97.4 0.001 2.2E-08 57.0 9.2 72 764-835 1-91 (96)
322 cd05770 IgC_beta2m Class I maj 97.4 0.0023 5.1E-08 54.4 11.2 68 361-429 12-84 (93)
323 cd05712 Ig_Siglec_N Immunoglob 97.4 0.00078 1.7E-08 61.2 8.9 73 355-427 5-102 (119)
324 cd07694 Ig2_CD4 Second immunog 97.4 0.002 4.3E-08 52.7 10.0 62 759-827 10-73 (88)
325 cd05767 IgC_MHC_II_alpha Class 97.4 0.0021 4.5E-08 54.9 10.6 68 362-429 13-85 (94)
326 PHA03271 envelope glycoprotein 97.4 0.03 6.5E-07 59.0 20.7 168 307-487 206-387 (490)
327 PHA03273 envelope glycoprotein 97.4 0.011 2.3E-07 63.5 17.6 80 405-488 198-280 (486)
328 cd05720 Ig_CD8_alpha Immunoglo 97.4 0.00057 1.2E-08 60.3 7.0 66 760-826 3-90 (104)
329 cd05887 Ig1_Nectin-3_like Firs 97.3 0.0012 2.6E-08 56.5 8.6 70 566-635 1-88 (96)
330 smart00407 IGc1 Immunoglobulin 97.3 0.00097 2.1E-08 54.7 7.9 62 766-827 2-70 (75)
331 PF08205 C2-set_2: CD80-like C 97.3 0.0014 3.1E-08 56.0 9.1 68 763-830 14-86 (89)
332 PHA03271 envelope glycoprotein 97.3 0.038 8.2E-07 58.3 20.4 79 405-488 207-290 (490)
333 cd07692 Ig_CD3_epsilon Immunog 97.3 0.0003 6.5E-09 53.6 3.8 51 860-915 6-56 (65)
334 smart00407 IGc1 Immunoglobulin 97.3 0.002 4.2E-08 52.9 8.9 63 366-428 1-71 (75)
335 cd00096 Ig Immunoglobulin doma 97.3 0.0011 2.5E-08 53.5 7.7 62 367-428 1-66 (74)
336 PF08205 C2-set_2: CD80-like C 97.2 0.0024 5.3E-08 54.6 9.6 67 364-430 14-86 (89)
337 cd07698 IgC_MHC_I_alpha3 Class 97.2 0.0018 4E-08 55.7 8.8 66 763-828 14-83 (93)
338 cd07699 IgC_L Immunoglobulin C 97.2 0.0012 2.6E-08 57.5 7.5 72 358-429 11-90 (100)
339 cd04981 IgV_H Immunoglobulin ( 97.2 0.0018 3.9E-08 58.5 8.9 70 757-826 6-97 (117)
340 cd05712 Ig_Siglec_N Immunoglob 97.2 0.0025 5.4E-08 57.9 9.8 78 142-223 6-102 (119)
341 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.00061 1.3E-08 52.2 4.7 49 861-914 6-54 (69)
342 PHA03269 envelope glycoprotein 97.2 0.043 9.2E-07 59.2 19.6 207 200-426 288-512 (566)
343 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0028 6E-08 54.3 8.7 68 363-430 13-88 (94)
344 cd05719 Ig2_PVR_like Second im 97.1 0.0026 5.7E-08 54.5 8.6 65 764-831 16-85 (95)
345 cd05769 IgC_TCR_beta T cell re 97.1 0.0027 5.9E-08 56.4 8.8 76 357-432 11-96 (115)
346 smart00406 IGv Immunoglobulin 97.1 0.0015 3.1E-08 54.8 6.8 59 765-823 1-80 (81)
347 PF07654 C1-set: Immunoglobuli 97.1 0.004 8.7E-08 52.3 9.4 69 362-430 6-79 (83)
348 cd05768 IgC_CH4 CH4 domain (fo 97.1 0.0025 5.5E-08 55.6 8.3 71 359-429 11-92 (102)
349 cd04981 IgV_H Immunoglobulin ( 97.1 0.0025 5.5E-08 57.5 8.6 71 356-426 4-97 (117)
350 cd07696 IgC_CH3 CH3 domain (th 97.1 0.0016 3.6E-08 55.9 6.9 74 357-430 7-88 (96)
351 cd05772 IgC_SIRP Signal-regula 97.1 0.0052 1.1E-07 54.4 9.9 68 759-828 17-92 (111)
352 cd05847 IgC_CH2_IgE CH2 domain 97.0 0.0046 1E-07 52.9 8.9 69 762-830 13-88 (94)
353 KOG1480|consensus 96.9 0.00025 5.4E-09 79.8 0.6 184 241-442 23-221 (909)
354 cd05889 Ig1_DNAM-1_like First 96.9 0.007 1.5E-07 51.9 9.0 69 566-634 1-87 (96)
355 smart00406 IGv Immunoglobulin 96.9 0.0033 7E-08 52.6 6.9 59 366-424 1-81 (81)
356 cd07699 IgC_L Immunoglobulin C 96.9 0.0028 6E-08 55.3 6.4 71 562-632 14-90 (100)
357 cd07703 Ig2_Nectin-2_like Seco 96.9 0.0058 1.3E-07 52.2 8.1 64 764-830 16-84 (95)
358 cd05770 IgC_beta2m Class I maj 96.8 0.01 2.2E-07 50.6 9.5 69 563-631 13-83 (93)
359 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0031 6.8E-08 54.2 6.2 72 561-632 10-87 (96)
360 PHA02914 Immunoglobulin-like d 96.8 0.8 1.7E-05 48.4 24.2 121 357-487 272-421 (500)
361 cd05768 IgC_CH4 CH4 domain (fo 96.8 0.0037 8E-08 54.6 6.5 71 562-632 13-92 (102)
362 cd07697 IgC_TCR_gamma T cell r 96.8 0.0076 1.6E-07 51.6 8.1 67 359-428 11-85 (96)
363 cd05719 Ig2_PVR_like Second im 96.7 0.012 2.7E-07 50.4 9.3 68 365-435 16-89 (95)
364 cd07691 Ig_CD3_gamma_delta Imm 96.7 0.0045 9.7E-08 47.6 5.6 50 460-514 5-54 (69)
365 PF07654 C1-set: Immunoglobuli 96.6 0.023 4.9E-07 47.7 10.2 70 564-633 7-79 (83)
366 cd05766 IgC_MHC_II_beta Class 96.6 0.015 3.1E-07 50.0 9.0 71 563-633 12-85 (94)
367 cd05767 IgC_MHC_II_alpha Class 96.6 0.023 4.9E-07 48.6 10.0 68 564-631 14-84 (94)
368 cd07703 Ig2_Nectin-2_like Seco 96.6 0.0094 2E-07 50.9 7.6 72 366-438 17-92 (95)
369 cd07692 Ig_CD3_epsilon Immunog 96.6 0.0042 9.2E-08 47.5 4.7 51 459-514 5-55 (65)
370 cd04985 IgC_CH1 CH1 domain (fi 96.5 0.018 4E-07 49.4 8.9 65 363-428 15-87 (95)
371 cd07704 Ig2_Nectin-3-4_like Se 96.3 0.019 4.1E-07 48.9 7.8 73 357-430 9-86 (97)
372 PHA02982 hypothetical protein; 96.2 0.045 9.7E-07 52.0 10.2 120 357-486 32-173 (251)
373 cd05769 IgC_TCR_beta T cell re 96.2 0.02 4.2E-07 51.0 7.7 73 562-634 15-95 (115)
374 cd04986 IgC_CH2 CH2 domain (se 96.1 0.014 3E-07 50.0 6.1 75 557-633 11-91 (99)
375 cd05721 IgV_CTLA-4 Immunoglobu 96.1 0.043 9.3E-07 48.0 8.9 69 356-424 5-93 (115)
376 cd07697 IgC_TCR_gamma T cell r 96.1 0.034 7.3E-07 47.7 8.2 67 564-631 15-85 (96)
377 PHA02914 Immunoglobulin-like d 96.1 2.4 5.3E-05 45.0 26.6 124 755-888 271-422 (500)
378 cd04986 IgC_CH2 CH2 domain (se 96.0 0.024 5.3E-07 48.6 6.9 73 355-429 10-90 (99)
379 PRK14081 triple tyrosine motif 96.0 4.6 0.0001 47.4 60.7 451 358-880 106-611 (667)
380 PHA02633 hypothetical protein; 95.9 0.025 5.5E-07 42.4 5.5 37 201-237 18-54 (63)
381 cd07689 Ig2_VCAM-1 Second immu 95.9 0.035 7.5E-07 46.9 7.0 68 360-428 11-86 (99)
382 KOG1480|consensus 95.6 0.0036 7.9E-08 70.9 0.6 176 348-528 23-219 (909)
383 PHA02982 hypothetical protein; 95.6 0.12 2.6E-06 49.2 10.4 121 559-689 33-172 (251)
384 PF08204 V-set_CD47: CD47 immu 95.6 0.012 2.6E-07 52.6 3.7 80 760-840 24-120 (130)
385 PHA02633 hypothetical protein; 95.5 0.04 8.7E-07 41.3 5.4 37 407-443 20-56 (63)
386 cd05721 IgV_CTLA-4 Immunoglobu 95.2 0.16 3.4E-06 44.5 8.9 66 759-824 9-93 (115)
387 cd07689 Ig2_VCAM-1 Second immu 95.2 0.074 1.6E-06 45.0 6.6 68 760-828 12-86 (99)
388 KOG4597|consensus 95.1 0.031 6.7E-07 59.9 5.2 92 750-841 198-293 (560)
389 cd04985 IgC_CH1 CH1 domain (fi 95.1 0.1 2.3E-06 44.8 7.5 66 564-631 15-87 (95)
390 PF08204 V-set_CD47: CD47 immu 94.9 0.046 9.9E-07 49.0 5.1 78 361-440 24-120 (130)
391 cd07704 Ig2_Nectin-3-4_like Se 94.6 0.24 5.2E-06 42.3 8.3 67 759-828 12-84 (97)
392 PF11465 Receptor_2B4: Natural 93.9 0.89 1.9E-05 38.8 10.2 45 189-235 61-106 (108)
393 PHA03042 CD47-like protein; Pr 93.3 0.22 4.7E-06 50.0 6.6 68 859-927 29-104 (286)
394 KOG4597|consensus 92.8 0.14 3.1E-06 55.1 4.9 92 350-441 197-293 (560)
395 PF07354 Sp38: Zona-pellucida- 92.8 0.14 3.1E-06 51.1 4.5 48 378-428 12-60 (271)
396 PHA03286 envelope glycoprotein 92.7 2.5 5.5E-05 45.8 13.8 85 93-182 126-226 (492)
397 PHA03042 CD47-like protein; Pr 92.6 0.48 1E-05 47.6 7.9 73 760-840 28-105 (286)
398 PF07354 Sp38: Zona-pellucida- 92.5 0.19 4.2E-06 50.3 5.0 48 174-223 12-59 (271)
399 PF02124 Marek_A: Marek's dise 92.3 6.2 0.00013 38.9 14.8 102 378-487 6-117 (211)
400 PHA03283 envelope glycoprotein 91.3 3.3 7.1E-05 46.1 13.0 85 93-182 133-234 (542)
401 PF06832 BiPBP_C: Penicillin-B 90.4 1.6 3.5E-05 37.0 8.0 55 863-921 31-86 (89)
402 KOG1026|consensus 90.3 0.29 6.3E-06 57.5 4.4 156 758-931 202-366 (774)
403 PF11465 Receptor_2B4: Natural 89.1 0.94 2E-05 38.7 5.3 66 765-833 29-99 (108)
404 PHA03283 envelope glycoprotein 89.1 9.6 0.00021 42.6 14.2 98 491-588 132-234 (542)
405 PF06832 BiPBP_C: Penicillin-B 88.6 4.6 0.0001 34.2 9.5 74 747-833 9-86 (89)
406 PHA02865 MHC-like TNF binding 88.6 2 4.3E-05 45.6 8.5 21 366-386 216-238 (338)
407 PHA03282 envelope glycoprotein 88.1 5.9 0.00013 43.3 11.7 23 200-222 332-354 (540)
408 PHA03286 envelope glycoprotein 88.1 14 0.0003 40.5 14.2 37 608-644 127-163 (492)
409 PF00801 PKD: PKD domain; Int 87.7 2 4.4E-05 34.2 6.4 61 759-832 7-68 (69)
410 PF02010 REJ: REJ domain; Int 87.2 0.68 1.5E-05 53.5 4.8 273 200-482 37-340 (440)
411 PF05790 C2-set: Immunoglobuli 87.1 5.5 0.00012 32.8 8.5 52 777-839 26-78 (80)
412 PF02010 REJ: REJ domain; Int 86.8 0.8 1.7E-05 53.0 5.1 259 308-587 38-340 (440)
413 PF02124 Marek_A: Marek's dise 86.4 30 0.00064 34.3 14.5 102 778-886 7-116 (211)
414 smart00089 PKD Repeats in poly 85.9 5.5 0.00012 32.7 8.3 63 762-839 13-78 (79)
415 PF05790 C2-set: Immunoglobuli 84.3 6 0.00013 32.6 7.4 38 378-425 26-63 (80)
416 PHA03281 envelope glycoprotein 83.6 13 0.00027 41.6 11.6 84 94-182 298-395 (642)
417 PF00801 PKD: PKD domain; Int 82.8 4.8 0.0001 32.0 6.4 52 561-613 7-59 (69)
418 PF02480 Herpes_gE: Alphaherpe 82.6 1.2 2.5E-05 50.2 3.7 85 94-183 89-191 (439)
419 KOG1026|consensus 82.5 1.6 3.4E-05 51.7 4.7 154 358-528 201-363 (774)
420 PHA03282 envelope glycoprotein 82.3 35 0.00075 37.7 14.0 35 309-343 125-161 (540)
421 PF06328 Lep_receptor_Ig: Ig-l 82.0 7.6 0.00017 32.7 7.4 67 356-424 10-81 (89)
422 PF06328 Lep_receptor_Ig: Ig-l 81.9 4.4 9.5E-05 34.2 5.9 71 250-327 11-81 (89)
423 smart00089 PKD Repeats in poly 81.7 10 0.00023 31.0 8.3 63 860-927 13-78 (79)
424 PHA02865 MHC-like TNF binding 74.1 7.9 0.00017 41.3 6.5 22 567-588 216-238 (338)
425 cd00146 PKD polycystic kidney 71.9 26 0.00057 28.8 8.1 25 763-787 14-39 (81)
426 PF02480 Herpes_gE: Alphaherpe 71.9 12 0.00027 42.2 7.8 78 309-386 90-190 (439)
427 cd00146 PKD polycystic kidney 71.4 35 0.00077 28.0 8.8 26 565-590 14-39 (81)
428 PHA03052 Hypothetical protein; 64.7 18 0.00039 28.1 4.8 35 756-790 5-42 (69)
429 PHA03281 envelope glycoprotein 63.5 55 0.0012 36.9 10.2 77 806-882 299-394 (642)
430 PF11141 DUF2914: Protein of u 63.4 72 0.0016 25.1 8.3 59 778-839 7-65 (66)
431 PF11141 DUF2914: Protein of u 57.7 73 0.0016 25.1 7.4 59 378-439 6-65 (66)
432 KOG0200|consensus 57.5 1.7E+02 0.0037 35.3 14.3 108 309-426 14-138 (609)
433 PHA03052 Hypothetical protein; 56.7 35 0.00075 26.6 5.1 35 357-391 5-42 (69)
434 PHA03189 UL14 tegument protein 55.5 1.4E+02 0.0031 31.1 10.7 74 559-633 61-158 (348)
435 KOG0200|consensus 53.2 2.1E+02 0.0046 34.5 14.2 32 803-834 115-146 (609)
436 cd05890 Ig2_Nectin-1_like Seco 51.6 43 0.00092 28.3 5.3 58 765-827 22-86 (98)
437 PHA03240 envelope glycoprotein 46.2 23 0.00051 34.3 3.5 66 358-423 32-123 (258)
438 PHA03189 UL14 tegument protein 43.7 90 0.002 32.5 7.3 35 492-527 133-167 (348)
439 PF02440 Adeno_E3_CR1: Adenovi 43.1 46 0.001 25.9 4.1 21 361-385 2-22 (63)
440 cd05890 Ig2_Nectin-1_like Seco 40.5 1.1E+02 0.0024 25.9 6.2 68 367-437 23-96 (98)
441 PHA03240 envelope glycoprotein 38.6 38 0.00082 32.9 3.6 73 757-830 32-130 (258)
442 PHA03112 IL-18 binding protein 38.2 1.3E+02 0.0028 27.7 6.8 71 361-431 35-122 (141)
443 PF03921 ICAM_N: Intercellular 33.0 3.1E+02 0.0067 23.3 11.2 81 355-443 9-89 (91)
444 PF11049 KSHV_K1: Glycoprotein 30.2 60 0.0013 25.0 2.8 44 865-914 2-45 (71)
445 PHA03112 IL-18 binding protein 29.5 2E+02 0.0044 26.5 6.5 70 563-633 36-121 (141)
446 PF02440 Adeno_E3_CR1: Adenovi 29.4 1.3E+02 0.0029 23.4 4.6 21 760-784 2-22 (63)
447 KOG4289|consensus 28.3 1.5E+03 0.033 29.9 55.3 481 313-844 435-985 (2531)
448 PF03921 ICAM_N: Intercellular 26.5 4E+02 0.0088 22.6 11.2 82 555-647 8-89 (91)
449 PF01688 Herpes_gI: Alphaherpe 23.4 1.4E+02 0.0029 28.5 4.5 36 198-233 121-156 (161)
450 PF07705 CARDB: CARDB; InterP 22.0 4.4E+02 0.0095 22.2 7.6 34 357-390 11-49 (101)
451 PF01688 Herpes_gI: Alphaherpe 21.0 1.9E+02 0.004 27.6 4.9 25 93-117 123-147 (161)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.4e-57 Score=517.28 Aligned_cols=530 Identities=24% Similarity=0.418 Sum_probs=397.4
Q ss_pred CeeeeecCceeec-cCC--eEEEEEEEecCCCcEEEEEECCEecCCCC--cEEEEEcCCEEEEEEcccC-CCCceeEEEE
Q psy16863 350 PAFIRRLHDIAVK-VGT--RARLLVEIRSPTEIKIHWYRNDRKLEENK--IYRTQHDGNFYFIDLSSVS-LFDSGRWTCL 423 (1075)
Q Consensus 350 p~~~~~~~~~~v~-~G~--~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~ 423 (1075)
|.|...+.+..+. .-+ .+.|.|++.|+|.|+++|+|||..+.... ++.+. .|+ |.|.+.. ..|.|.|.|.
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~-~G~---lvI~~p~~~~d~G~YqC~ 115 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL-GGT---LVITNPDAALDQGIYQCF 115 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee-cCc---eEecCCcchhhcceeEEE
Confidence 6666555443332 222 49999999999999999999999876543 33333 343 5666666 8899999999
Q ss_pred EEeCCCceeeEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEEEE-CCCCCeEEEEeCCEec-c--------CCCE
Q psy16863 424 AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECKVM-GIPTPQLIWYKDNKKI-K--------AGDI 492 (1075)
Q Consensus 424 a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~l-~--------~~~~ 492 (1075)
|+|..|... +-.+.++. .+.+++-......+ +.+|+.+.|.|... +.|.++|.|..+..+- . .+..
T Consensus 116 AsN~~Gta~-S~~~~l~~--~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~ 192 (1051)
T KOG3513|consen 116 ASNKLGTAV-SREARLQF--GFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQEN 192 (1051)
T ss_pred eecccceee-ccceeecc--cccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEeccc
Confidence 999999874 22333332 12222222333333 78999999999964 6788899999876542 1 1222
Q ss_pred EEEEeCCCCCCCcEEEEEEEEecceeeE---EEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEE
Q psy16863 493 FALTANPKDPSSLGTYTCEAVNCMGAAF---STSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI 569 (1075)
Q Consensus 493 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~ 569 (1075)
..|-+..+..+|.+.|.|.|.+..-... ..+.|.+... ......+|......+.+.....|+.+.
T Consensus 193 G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~------------~~~~~~~P~i~~~~p~~~~a~~G~~v~ 260 (1051)
T KOG3513|consen 193 GNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSN------------NVMREYAPKILVPFPETETALKGQSVK 260 (1051)
T ss_pred ceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccc------------ccccccCCccccCCCCcccccCCCeEE
Confidence 3677888999999999999998432221 1233333211 111222233333344467788899999
Q ss_pred EEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCc
Q psy16863 570 LECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY 649 (1075)
Q Consensus 570 L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~ 649 (1075)
|+|.+-|.|.| .|.|+|.++... ..+.+.... ...|.|.+++.+|+|.|+|.|+|..|... ....+.|..+
T Consensus 261 LECfA~G~P~P-~i~W~k~~g~~~-~~r~~~~~~---~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~-~~~~v~v~a~--- 331 (1051)
T KOG3513|consen 261 LECFALGNPTP-QIKWRKVDGKPP-PRRATYSNY---GKVLKIPNVQYEDAGEYECIAENSRGSAT-HSGHVTVYAP--- 331 (1051)
T ss_pred EEEEecCCCCC-cEEEEeCCCCCC-Ccceeeecc---ccEEEecccCcCCCeEEEEEEecccccce-eeEEEEEecC---
Confidence 99999999999 899999998532 233333322 24899999999999999999999999654 4457777776
Q ss_pred CCCceeecccee-eecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCe---EEEe---------ecCCCceEEEEEEecC
Q psy16863 650 RKPRFVESLKAV-MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDV---YQLT---------GTSSLGSYCCVAKNVM 716 (1075)
Q Consensus 650 ~~p~~~~~~~~~-~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~---~~~~---------~~~d~G~Y~C~a~N~~ 716 (1075)
|.++..+.+. +..|+.+.|.|.+.|.|.|+|+|+|||.++.+..+ +.+. ..+|+|.|+|.|+|.+
T Consensus 332 --P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~ 409 (1051)
T KOG3513|consen 332 --PYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKY 409 (1051)
T ss_pred --chhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeeccc
Confidence 5555555554 55788999999999999999999999999987655 4432 3479999999999999
Q ss_pred ceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccce--eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCc
Q psy16863 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS--CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN 794 (1075)
Q Consensus 717 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~ 794 (1075)
|...+++.|.|.+ .+|.|...+.. ..+..|.++.|.|...+.|.|.++|.|+++.+..+.+
T Consensus 410 G~i~anA~L~V~a-----------------~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r 472 (1051)
T KOG3513|consen 410 GTIYANAELKVLA-----------------SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGR 472 (1051)
T ss_pred ceEeeeeEEEEEc-----------------cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCce
Confidence 9999999999997 46777766544 4688999999999999999999999999998888899
Q ss_pred EEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEcc
Q psy16863 795 VKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGV 873 (1075)
Q Consensus 795 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~ 873 (1075)
+.+..++ +|.|.+++.+|+|.|+|.|+|.+|.+...+.|.|..+.++ ...+. ..+..|++++|.|++...
T Consensus 473 ~~i~edG----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri-----~~~P~~~~v~~g~~v~l~Ce~shD 543 (1051)
T KOG3513|consen 473 IRILEDG----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRI-----TLAPSNTDVKVGESVTLTCEASHD 543 (1051)
T ss_pred EEECCCC----cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceE-----EeccchhhhccCceEEEEeecccC
Confidence 9886543 6999999999999999999999999999999999876543 33333 348899999999999877
Q ss_pred CCC--eeEEEECCEEcCCC---Ce---------eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChhhh
Q psy16863 874 PQP--TLKWFKDGRELKAG---DI---------HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE 935 (1075)
Q Consensus 874 p~p--~v~W~k~g~~l~~~---~~---------~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~ 935 (1075)
|.. .|.|.+||..+... +. .+|.+......|+|.|+|.|.-.+.++++.+.|+|..+|.+..
T Consensus 544 ~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~ 619 (1051)
T KOG3513|consen 544 PSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPP 619 (1051)
T ss_pred CCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCC
Confidence 764 58999999987531 11 2344445556789999999999999999999999988876644
No 2
>KOG3513|consensus
Probab=100.00 E-value=2.9e-54 Score=492.19 Aligned_cols=686 Identities=20% Similarity=0.310 Sum_probs=466.0
Q ss_pred eeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceec-cCCCeEEEEEEEcCceeEEE-EEEEeeeccCCC
Q psy16863 164 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR-RDDGGRYSVTASNESGYSTA-KFELSVESQVPD 241 (1075)
Q Consensus 164 ~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~ 241 (1075)
.|.|.+.|+|.++|.|+++|.+............+| .|.|.+.. ..|+|.|+|.|+|..|...+ .+.|.. ..
T Consensus 61 ~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G--~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~----~~ 134 (1051)
T KOG3513|consen 61 TLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGG--TLVITNPDAALDQGIYQCFASNKLGTAVSREARLQF----GF 134 (1051)
T ss_pred EEEEEecCCCCceeEEEECCeecccccccceeeecC--ceEecCCcchhhcceeEEEeecccceeeccceeecc----cc
Confidence 467777788999999999998766543222222245 56676666 89999999999999998743 444433 24
Q ss_pred CCccc-cccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc-CC--CeEEEeeCCeEEEEEcccCC
Q psy16863 242 APAFI-RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GN--RFRAINRDGRTELNIRRVRR 317 (1075)
Q Consensus 242 ~p~~~-~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~-~~--~~~~~~~~~~~~L~I~~~~~ 317 (1075)
.+.|. .....+.+.+|+.+.|.|.... ..+++.+.|..+....+. .+ ++.+...| .|.+.++..
T Consensus 135 i~~F~~e~~~~v~v~eG~~~~L~C~pP~---------~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G---~Lyfs~V~~ 202 (1051)
T KOG3513|consen 135 IPKFKKEERSPVEVEEGDGVVLPCNPPA---------HFPPLRYYWMLNEFPHFVQIDNRRVFSQENG---NLYFSNVET 202 (1051)
T ss_pred cccCccccCCcEEEEeCCceEEeCCCCC---------CCCCccEEehhccCCcccccCcceeEecccc---eEEEeecch
Confidence 45565 4567788999999999996443 245678888776655544 33 33333333 799999999
Q ss_pred CCCEEEEEEEEeCCe---eEEEEEEEEEec---CCCCCCeeeeec-CceeeccCCeEEEEEEEecCCCcEEEEEECCEec
Q psy16863 318 DDGGRYSVTASNESG---YSTAKFELSVES---QVPDAPAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL 390 (1075)
Q Consensus 318 ~d~G~Y~C~a~n~~g---~~~~~~~l~V~~---~~~~~p~~~~~~-~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l 390 (1075)
+|.+.|.|.|.+... .....+.|.+.. ....+|.+.... .......|+.+.|.|.+.|+|.|+|.|+|.|...
T Consensus 203 ~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~ 282 (1051)
T KOG3513|consen 203 SDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKP 282 (1051)
T ss_pred hhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCC
Confidence 999999999998432 234445566532 233466665443 4677889999999999999999999999988753
Q ss_pred CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEE
Q psy16863 391 EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECK 469 (1075)
Q Consensus 391 ~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~ 469 (1075)
. ..+......+. +|.|.++..+|+|.|.|.|+|..|.......+.|..+|. +...+.+. +..|+.++|.|.
T Consensus 283 ~-~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~-----w~~~~~d~~~~~gs~v~~eC~ 354 (1051)
T KOG3513|consen 283 P-PRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPY-----WLQKPQDTEADTGSNVTLECK 354 (1051)
T ss_pred C-Ccceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCch-----hhcccceeEecCCCCeEEEEE
Confidence 2 23333444444 599999999999999999999999988899999988765 33344444 778999999999
Q ss_pred EECCCCCeEEEEeCCEeccCCCE---E-----EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCc
Q psy16863 470 VMGIPTPQLIWYKDNKKIKAGDI---F-----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF 541 (1075)
Q Consensus 470 ~~g~p~~~v~W~~~g~~l~~~~~---~-----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~ 541 (1075)
+.|.|.|.|+|++||++|...++ + .|.|..+..+|+|.|.|.|+|.+|...+++.|.|..
T Consensus 355 a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a------------ 422 (1051)
T KOG3513|consen 355 ASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA------------ 422 (1051)
T ss_pred ecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc------------
Confidence 99999999999999999986655 2 688999999999999999999999999999999984
Q ss_pred CCCCCCCCCCeeeeeccc--eEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecC
Q psy16863 542 NSLMPPGPAPIFIKEVEN--VKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVD 619 (1075)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~--~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d 619 (1075)
.+|.|...+-. ..+..|..+.|.|...+.|.| .+.|.++++.+..+.++.+..+| +|.|.+++.+|
T Consensus 423 -------~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p-~~~W~k~~~~~~~~~r~~i~edG----tL~I~n~t~~D 490 (1051)
T KOG3513|consen 423 -------SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP-KVSWLKGGEKLLQSGRIRILEDG----TLEISNVTRSD 490 (1051)
T ss_pred -------cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc-eEEEEcCCcccccCceEEECCCC----cEEecccCccc
Confidence 34445444433 467889999999999999998 89999999988889999999988 89999999999
Q ss_pred CceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeecc-ceeeecCCeEEEEEEEecCCC--CeEEEEECCEEcC---C
Q psy16863 620 DGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESL-KAVMTDDGLVSFECKVVGFPT--PTLQWFKDNEELK---P 693 (1075)
Q Consensus 620 ~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~-~~~~~~g~~~~l~C~v~g~p~--p~v~W~k~g~~l~---~ 693 (1075)
+|.|+|.|.|..|.+... ..|.|.-+ ++++..+ ...+..|..+.|.|.+.-+|. ..+.|.+||..+. .
T Consensus 491 aG~YtC~A~N~~G~a~~~-~~L~Vkd~-----tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~ 564 (1051)
T KOG3513|consen 491 AGKYTCVAENKLGKAEST-GNLIVKDA-----TRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPD 564 (1051)
T ss_pred CcEEEEEEEcccCccceE-EEEEEecC-----ceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCC
Confidence 999999999999998854 46666554 3344333 334678899999999976654 4799999999764 2
Q ss_pred CCe-----------EEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeee
Q psy16863 694 GDV-----------YQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQA 760 (1075)
Q Consensus 694 ~~~-----------~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 760 (1075)
+.. +.+. ...|+|.|.|.|.-...+....+.|.|...+. ||. ++.+
T Consensus 565 ~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPg---------------pP~------~v~~ 623 (1051)
T KOG3513|consen 565 GDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPG---------------PPP------DVHV 623 (1051)
T ss_pred CCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCC---------------CCC------ceeE
Confidence 222 2232 23689999999999888888889999987542 332 1111
Q ss_pred --ecCCeEEEEEEEecCC-CCeEEEEE-CCEEeecCCcEEEEEee---CcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863 761 --TVNEEFKFTVQVSISP-EPKVSWFR-DDQQVVESDNVKILKET---LGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833 (1075)
Q Consensus 761 --~~g~~~~l~C~v~g~p-~p~v~W~k-~g~~i~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 833 (1075)
....++.|+-..-..- .| |.=|. ..+.-....+....... .+..+-++.++.+--..+++.+|.|..|....
T Consensus 624 ~~i~~t~~~lsW~~g~dn~Sp-I~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~geP 702 (1051)
T KOG3513|consen 624 DDISDTTARLSWSPGSDNNSP-IEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEP 702 (1051)
T ss_pred eeeccceEEEEeecCCCCCCC-ceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCC
Confidence 1112222322211110 11 11110 00000111111111100 01123557788888899999999999997654
Q ss_pred EEEE-EEEecCCCCCCeeeeeccee-ecCCC--eEEEEEEE-----EccCCC--eeEEEECCEE-------cCCCCeeEE
Q psy16863 834 SCFL-KLNVPKHYKKPKFLEELKAV-LSEGG--AVNLECKV-----IGVPQP--TLKWFKDGRE-------LKAGDIHKI 895 (1075)
Q Consensus 834 s~~l-~V~~~~~~~~p~~~~~~~~~-~~~g~--~~~L~C~v-----~g~p~p--~v~W~k~g~~-------l~~~~~~~i 895 (1075)
|.-- .+..++ ..|.. .+..+ ...|+ .++++-+- ...|.. .|+|..+|.. +..-+..++
T Consensus 703 S~pS~~~rT~e--a~P~~--~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~ 778 (1051)
T KOG3513|consen 703 SPPSEKVRTPE--AAPSV--NPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRY 778 (1051)
T ss_pred CCCccceecCC--CCCcc--CCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceE
Confidence 3211 121111 11211 11111 12223 44444442 112222 3788877654 112122333
Q ss_pred EECCCCceeeEEE--EEEEEeCCeeEEEEEEEEEecCC
Q psy16863 896 ISGEDGTCCLGIY--TCEAHNCMGTTSSSAALLGFEDK 931 (1075)
Q Consensus 896 ~~~~~~~~d~G~Y--~C~a~N~~G~~~~~~~l~v~~~~ 931 (1075)
........-.-.| ...|.|..|....+...+++...
T Consensus 779 V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~E 816 (1051)
T KOG3513|consen 779 VVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGE 816 (1051)
T ss_pred EEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCC
Confidence 3332222112234 67999999988777766666443
No 3
>KOG4221|consensus
Probab=100.00 E-value=1.2e-41 Score=384.66 Aligned_cols=527 Identities=21% Similarity=0.320 Sum_probs=383.0
Q ss_pred CccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc--CCCeEEEeeCCeEEEEEcccCC---
Q psy16863 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF--GNRFRAINRDGRTELNIRRVRR--- 317 (1075)
Q Consensus 243 p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~--- 317 (1075)
-.|+.++.|. .+|..+.|+|...... +.+..+.|.++|..+.. .++.+...+| +|.|.++..
T Consensus 42 ~~f~~ep~d~--~~~~svlLecs~~~~~--------~~~~~i~wkkDg~~l~e~~d~~~~~LsNg---Sl~i~~v~~~kh 108 (1381)
T KOG4221|consen 42 LQFLLEPSDA--MEGSSVLLECSAYAAG--------GTSVKIEWKKDGSQLNEVYDDRRQLLSNG---SLYISSVLASKH 108 (1381)
T ss_pred ceEEeccccc--ccccceEEeccccccC--------CCCeeEEEccCchhhhhhhhhHHhhccCC---ceeEeeeccccc
Confidence 3455555544 7888998888765432 24667777755544443 2333333444 688888776
Q ss_pred --CCCEEEEEEEEeC-Cee-EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC
Q psy16863 318 --DDGGRYSVTASNE-SGY-STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393 (1075)
Q Consensus 318 --~d~G~Y~C~a~n~-~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~ 393 (1075)
-++|.|+|.|+-. .|+ .+..+.|.+.. .+.|...+.+..+..|+++.|.|++.+.|.+.+.|.||+.++...
T Consensus 109 ~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~----~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~ 184 (1381)
T KOG4221|consen 109 NKVDEGVYQCLATVEDVGSILSRTAKVALAG----LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD 184 (1381)
T ss_pred ccccCceEEEEEEccccceeecceEEEEecc----cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCC
Confidence 7899999999875 554 67777787764 777888888899999999999999999888899999999988877
Q ss_pred CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEeecCC-CCCCCeeeeecc-eEEecCCeEEEEEEE
Q psy16863 394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPK-AYKAPFFTKELE-AILTEQGTVSLECKV 470 (1075)
Q Consensus 394 ~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~-~~~~p~~~~~~~-~~~~~g~~v~l~C~~ 470 (1075)
.++....+|. |.|.++...|.|.|+|.+++..-.. +..+.|+|.-.+ ....-.|...+. .++.+|+++.|.|.+
T Consensus 185 ~r~i~lpsG~---L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv 261 (1381)
T KOG4221|consen 185 SRVIVLPSGA---LEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV 261 (1381)
T ss_pred CcEEEcCCCc---EEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe
Confidence 7887777875 7899999999999999999875432 345667776222 222223444444 347899999999999
Q ss_pred ECCCCCeEEEEeCCEeccCCC-EE------EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCC
Q psy16863 471 MGIPTPQLIWYKDNKKIKAGD-IF------ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNS 543 (1075)
Q Consensus 471 ~g~p~~~v~W~~~g~~l~~~~-~~------~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~ 543 (1075)
.|.|.|.|.|.|||+.|.-.. ++ .|.|..+...|+|.|+|+|.|......+++.|.|.
T Consensus 262 s~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~--------------- 326 (1381)
T KOG4221|consen 262 SGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL--------------- 326 (1381)
T ss_pred cCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE---------------
Confidence 999999999999999987553 22 46788899999999999999977777788888887
Q ss_pred CCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceE
Q psy16863 544 LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEW 623 (1075)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 623 (1075)
.+|.|...+.+....++..+.|.|.+.+.|.| .+.|||+|..+..++.+++...+ .|+|..+-..|+|.|
T Consensus 327 -----a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p-~v~w~kNgd~~ipsdy~ki~~~~----~lrIlgi~~sdeg~y 396 (1381)
T KOG4221|consen 327 -----APPGFTKAPTTLVAHESMDIEFECPVSGKPIP-TVRWYKNGDRIIPSDYFKIVGGG----NLRILGIVKSDEGFY 396 (1381)
T ss_pred -----cCCCCCCCCcceeeeeccceeEeCCCCCCCcc-eEEEEecCcccCcccceEecCCC----CcEEEEEecccchhh
Confidence 35788888899999999999999999999988 89999999998887777665444 388888999999999
Q ss_pred EEEEECCCCceeeeeEEEEEeCC-CCcCCCceeecccee-eecCCeEEEEEE-----EecCCCCeEEEEE-CCEEcC---
Q psy16863 624 KCVATSSSGVKQFSAAYVHVLMP-KNYRKPRFVESLKAV-MTDDGLVSFECK-----VVGFPTPTLQWFK-DNEELK--- 692 (1075)
Q Consensus 624 ~C~a~n~~g~~~~~~~~l~v~~p-~~~~~p~~~~~~~~~-~~~g~~~~l~C~-----v~g~p~p~v~W~k-~g~~l~--- 692 (1075)
.|.++|..|.....+ .+.+... .......+-.....+ +...++..+.|. ..+.+.+.++|+. ++..+.
T Consensus 397 Qcvaen~~G~a~a~a-~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~ 475 (1381)
T KOG4221|consen 397 QCVAENDAGSAQAAA-QLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERL 475 (1381)
T ss_pred hhhhccCcccccchh-hheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhh
Confidence 999999999876443 3333222 111111111111111 111222222232 2244667899986 332221
Q ss_pred -----CCCeEEEeecCCCceE--EEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCe
Q psy16863 693 -----PGDVYQLTGTSSLGSY--CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765 (1075)
Q Consensus 693 -----~~~~~~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 765 (1075)
+|-...+......+.| +|.|.|..|...+++.|.|... |. ++ .. ...+..
T Consensus 476 ~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~------------------pE---gp-~~-~~a~at 532 (1381)
T KOG4221|consen 476 QNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQ------------------PE---GP-VQ-LQAYAT 532 (1381)
T ss_pred eeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecC------------------CC---CC-cc-cccccc
Confidence 2323344455677777 6677899999999999999852 22 11 11 345556
Q ss_pred EEEEEEEecCCCC----eEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEP----KVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 766 ~~l~C~v~g~p~p----~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
-.++|.+...|++ .|+|||....... +....+. .....++|.++.+.+...|+|+|.|.+|...++..+.|.
T Consensus 533 s~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~---~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~ 609 (1381)
T KOG4221|consen 533 SPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVE---NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVR 609 (1381)
T ss_pred CcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEe---cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEE
Confidence 6788999988887 8999998766552 2333332 234589999999999999999999999999999999887
Q ss_pred e
Q psy16863 841 V 841 (1075)
Q Consensus 841 ~ 841 (1075)
.
T Consensus 610 T 610 (1381)
T KOG4221|consen 610 T 610 (1381)
T ss_pred e
Confidence 4
No 4
>KOG4221|consensus
Probab=100.00 E-value=9.6e-40 Score=369.36 Aligned_cols=610 Identities=20% Similarity=0.267 Sum_probs=403.1
Q ss_pred ceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceecc--CcEEEEecCCeEEEEEceecc-----
Q psy16863 138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG--NRFRAINRDGRTELNIRRVRR----- 210 (1075)
Q Consensus 138 ~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~L~I~~~~~----- 210 (1075)
|+..+.|. .+|..+.|.|...... ...+.+.|.+||..+... .+.+...++ .|.|.++..
T Consensus 44 f~~ep~d~--~~~~svlLecs~~~~~--------~~~~~i~wkkDg~~l~e~~d~~~~~LsNg---Sl~i~~v~~~kh~~ 110 (1381)
T KOG4221|consen 44 FLLEPSDA--MEGSSVLLECSAYAAG--------GTSVKIEWKKDGSQLNEVYDDRRQLLSNG---SLYISSVLASKHNK 110 (1381)
T ss_pred EEeccccc--ccccceEEeccccccC--------CCCeeEEEccCchhhhhhhhhHHhhccCC---ceeEeeeccccccc
Confidence 44444433 6788888887654432 246789999988766543 444444444 466666655
Q ss_pred CCCeEEEEEEEcC-ceeE-EEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEec
Q psy16863 211 DDGGRYSVTASNE-SGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRA 288 (1075)
Q Consensus 211 ~D~G~Y~C~a~n~-~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~ 288 (1075)
-|.|.|+|.|.-. .|.. +..+.|.+. ..+.|...+.+..+..|+++.|.|++... +-..+.|.+
T Consensus 111 ~~eg~Yqc~atv~~~gsi~Sr~a~v~~a----~~~~f~~~~~~~t~~~g~ta~f~c~vn~e----------~~p~i~w~k 176 (1381)
T KOG4221|consen 111 VDEGVYQCLATVEDVGSILSRTAKVALA----GLADFALQPESTTLLYGQTALFSCEVNAE----------PVPTIMWLK 176 (1381)
T ss_pred ccCceEEEEEEccccceeecceEEEEec----ccCccccCccceeEecCCcEEEEEEEcCc----------cCceeEEec
Confidence 8899999999865 4443 455666654 56788889999999999999999987742 222355655
Q ss_pred CCCcccc-CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCee-EEEEEEEEEecCC--CCCCeeeeecCceeeccC
Q psy16863 289 QGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQV--PDAPAFIRRLHDIAVKVG 364 (1075)
Q Consensus 289 ~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~--~~~p~~~~~~~~~~v~~G 364 (1075)
++ .++. ++++.+..+| .|.|.++++.|.|.|+|.+++.+.. .+..+.|+|.... .....|+..+....+.+|
T Consensus 177 n~-~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g 252 (1381)
T KOG4221|consen 177 ND-QPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEG 252 (1381)
T ss_pred cc-ccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccC
Confidence 55 4555 4455444444 7999999999999999999996543 5777888887311 122347778889999999
Q ss_pred CeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCC
Q psy16863 365 TRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444 (1075)
Q Consensus 365 ~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~ 444 (1075)
+++.|.|.+.|.|.|.|.|.|||+.|.-+. +++...|.. .|.|.+++.+|+|.|+|.|+|..-...+++.|+|+++|.
T Consensus 253 ~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~g~~-slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~ 330 (1381)
T KOG4221|consen 253 DDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLVGGS-SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPG 330 (1381)
T ss_pred CcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEeccc-ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCC
Confidence 999999999999999999999999886554 344333332 377999999999999999999766777889999998864
Q ss_pred CCCCeeeeecce-EEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEE------EEeCCCCCCCcEEEEEEEEecce
Q psy16863 445 YKAPFFTKELEA-ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA------LTANPKDPSSLGTYTCEAVNCMG 517 (1075)
Q Consensus 445 ~~~p~~~~~~~~-~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~------l~i~~~~~~d~G~Y~C~a~n~~g 517 (1075)
|...+.. ...++..+.|.|.+.|.|.|.|.|+|||..+..++.+. |.|..+-..|.|.|.|.++|..|
T Consensus 331 -----~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G 405 (1381)
T KOG4221|consen 331 -----FTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAG 405 (1381)
T ss_pred -----CCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcc
Confidence 3333333 36678899999999999999999999999887655442 45555667889999999999999
Q ss_pred eeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEE------EEEEEecCCCCceEEEEeCCeE
Q psy16863 518 AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI------LECQVLVPPWPRSIYWYNKEGV 591 (1075)
Q Consensus 518 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~------L~C~~~~~p~p~~v~W~~~~~~ 591 (1075)
.+...+.+.+..++...+.. ..+ ..+.++.+..-.+-. ..|. .+.+.+ .++|+.....
T Consensus 406 ~a~a~a~l~vv~~p~~~~s~------~~~--------sap~~lv~~~~~srfi~~tw~~p~~-~~g~i~-~~~v~~~~~~ 469 (1381)
T KOG4221|consen 406 SAQAAAQLEVVPQPASASSD------LLP--------SAPRDLVANLVSSRFIQLTWRPPAQ-ISGNIS-TYTVFYKVEG 469 (1381)
T ss_pred cccchhhheeccCCcccccC------ccc--------cCCcceecccccceeEEEeecCccc-cCCCcc-eEEEEEecCC
Confidence 99999988766433221111 111 111222222222222 3442 233334 7889865544
Q ss_pred EecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEE
Q psy16863 592 VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671 (1075)
Q Consensus 592 i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~ 671 (1075)
........ ..+.+ ..+.+.++...-...++|.|.|..|.... +..+.|..++. .|.. +.....-.++
T Consensus 470 ~~rer~~~--tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~s-S~pLkV~t~pE--gp~~-------~~a~ats~~t 536 (1381)
T KOG4221|consen 470 DVRERLQN--TSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGES-SAPLKVTTQPE--GPVQ-------LQAYATSPTT 536 (1381)
T ss_pred chhhhhee--ccCCc-eEEEeeecccceeEEEEEeccCcccCCcc-CCceEEecCCC--CCcc-------ccccccCcce
Confidence 32222211 12223 57888888888888888899999999874 46888888765 2321 2223345688
Q ss_pred EEEecCCCC----eEEEEECCEEcC-CC---------CeEEEeec--CCCceEEEEEEecCceEEEEEEEEEEeccccCc
Q psy16863 672 CKVVGFPTP----TLQWFKDNEELK-PG---------DVYQLTGT--SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLS 735 (1075)
Q Consensus 672 C~v~g~p~p----~v~W~k~g~~l~-~~---------~~~~~~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~ 735 (1075)
|.+...|++ .++|||...... .+ ..|++.+. .+...|+|+|.|.+|...++..+.|......++
T Consensus 537 i~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~Ps 616 (1381)
T KOG4221|consen 537 ILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPS 616 (1381)
T ss_pred EEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCC
Confidence 999887766 699998654433 22 23444433 466788999999999999999999986433221
Q ss_pred hhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEE------ECCEE---------eecCCcEEEEEe
Q psy16863 736 EEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWF------RDDQQ---------VVESDNVKILKE 800 (1075)
Q Consensus 736 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~------k~g~~---------i~~~~~~~~~~~ 800 (1075)
.||. ++.+. +...-...|.|. ++|.- +.....++-...
T Consensus 617 -----------aPP~------Nl~le----------v~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v 669 (1381)
T KOG4221|consen 617 -----------APPQ------NLSLE----------VVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVV 669 (1381)
T ss_pred -----------CCCc------ceEEE----------ecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeec
Confidence 2332 11111 111222344442 22211 111111211122
Q ss_pred eCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863 801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841 (1075)
Q Consensus 801 ~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 841 (1075)
........+.++.+.-...++..|.|..|....+-.+....
T Consensus 670 ~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT 710 (1381)
T KOG4221|consen 670 KGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAET 710 (1381)
T ss_pred ccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccC
Confidence 21234566777888888888889999888776666555543
No 5
>KOG4222|consensus
Probab=100.00 E-value=1.8e-40 Score=373.09 Aligned_cols=436 Identities=25% Similarity=0.467 Sum_probs=333.1
Q ss_pred CCCeeeeecceE-EecCCeEEEEEEEECCCCCeEEEEeCCEeccC------------CCEEEEEeCC--CCCCCcEEEEE
Q psy16863 446 KAPFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA------------GDIFALTANP--KDPSSLGTYTC 510 (1075)
Q Consensus 446 ~~p~~~~~~~~~-~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~------------~~~~~l~i~~--~~~~d~G~Y~C 510 (1075)
.+|.++..+.+. +..++.++|.|.++|.|+|+|+|||+|+.... +..+.|.+.. ....|.|.|+|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c 109 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC 109 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence 445666555554 67788999999999999999999999975432 2222333322 12238999999
Q ss_pred EEEecceeeEEE-EEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEe-cCCCCceEEEEeC
Q psy16863 511 EAVNCMGAAFST-SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNK 588 (1075)
Q Consensus 511 ~a~n~~g~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~-~~p~p~~v~W~~~ 588 (1075)
.|.|..|.+.+. +.|.+.. ....|-..+.+..+..|+.+.|+|.-. +.|.| .+.|.|+
T Consensus 110 vasn~~g~avSr~a~L~vav-------------------lrddfrv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kd 169 (1281)
T KOG4222|consen 110 VASNRLGEAVSRGASLIVAV-------------------LRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKD 169 (1281)
T ss_pred eecCccceeeecCceEEEEE-------------------echhcccCcccccccccceeEEeccCCCCCCCC-cceeecC
Confidence 999999987543 3333331 133455556777888899999999864 56666 8999999
Q ss_pred CeEEe--cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccce-eeecC
Q psy16863 589 EGVVE--ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA-VMTDD 665 (1075)
Q Consensus 589 ~~~i~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~-~~~~g 665 (1075)
|..+. ....+.++..| .|.|.+++..|+|.|.|++.|.+|..+...+.+.|..+ |.|...... ++..|
T Consensus 170 g~pl~~~~~~~~~lisgG----~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~-----P~f~~rp~~~~v~~g 240 (1281)
T KOG4222|consen 170 GKPLDHYDVPIIALISGG----NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEK-----PWFWKRPKDLAVLVG 240 (1281)
T ss_pred CCccccccceeEEEecCC----cEEEeccccCCCceeeeeecccccccccccceeeeccC-----Cccccccccceeecc
Confidence 99886 44455556665 79999999999999999999999999888888888876 445544443 35667
Q ss_pred CeEEEEEEEecCCCCeEEEEECCEEcCCCCeEEEe-----------ecCCCceEEEEEEecCceEEEEEEEEEEeccccC
Q psy16863 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----------GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHL 734 (1075)
Q Consensus 666 ~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~-----------~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~ 734 (1075)
..+.|.|.+.|.|.|.+.|.|++..+... +|.+. ...|.|.|.|.|.|.+|....++.++|+
T Consensus 241 ~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~------ 313 (1281)
T KOG4222|consen 241 AAAEFDCRVGGDPQPTVRWKKDDPSLPRS-RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ------ 313 (1281)
T ss_pred cccccccccCCCCCCceeeeccCCCCCcc-ceeeeeccccccccccCCCcccceeeeccccccccccccceEEe------
Confidence 78999999999999999999987776543 33322 1248899999999999999999999998
Q ss_pred chhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEee--------cCCcEEEEEeeCcEEE
Q psy16863 735 SEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV--------ESDNVKILKETLGVCH 806 (1075)
Q Consensus 735 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~--------~~~~~~~~~~~~~~~~ 806 (1075)
.+|.|...+.+..+..|..++|.|.+.|+|.|.+.|.|.|.... ...+..+ .. ...
T Consensus 314 ------------apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~sv--s~--~g~ 377 (1281)
T KOG4222|consen 314 ------------APPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSV--SP--TGT 377 (1281)
T ss_pred ------------cCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCcccee--cC--CCC
Confidence 59999999999999999999999999999999999999875322 1222222 22 227
Q ss_pred EEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCC-CCCeeee--ecceeecCCCeEEEEEEEEccCCCeeEEEEC
Q psy16863 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHY-KKPKFLE--ELKAVLSEGGAVNLECKVIGVPQPTLKWFKD 883 (1075)
Q Consensus 807 L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~-~~p~~~~--~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~ 883 (1075)
|+|.+++..|.|.|.|...|..|.....+.+.+...-.. .+|..++ +...++.++..+.|.|.+.|.|.|.+.|+|+
T Consensus 378 L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~d 457 (1281)
T KOG4222|consen 378 LTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKD 457 (1281)
T ss_pred cccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhc
Confidence 999999999999999999999999888777776543222 3443332 2334567899999999999999999999999
Q ss_pred CEEcCCCCee-------EEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChh
Q psy16863 884 GRELKAGDIH-------KIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQ 933 (1075)
Q Consensus 884 g~~l~~~~~~-------~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~ 933 (1075)
|-.+...+.. ++.+......|.|.|+|+|.+..|+...+++|.|.+....
T Consensus 458 g~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s 514 (1281)
T KOG4222|consen 458 GCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSS 514 (1281)
T ss_pred ccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcc
Confidence 9877654421 2222233345789999999999999999999998766554
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.5e-39 Score=365.85 Aligned_cols=447 Identities=24% Similarity=0.438 Sum_probs=348.9
Q ss_pred CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC---CcEEEEEcCCEEEEEEccc--CCCCceeEEE
Q psy16863 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN---KIYRTQHDGNFYFIDLSSV--SLFDSGRWTC 422 (1075)
Q Consensus 348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~g~~~~L~I~~v--~~~d~G~Y~C 422 (1075)
.+|.++..+.++.+.-|++++|.|.+.|.|+|+|+|||+|...... .......+|....|.+.+= ...|.|.|+|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c 109 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC 109 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence 5899999999999999999999999999999999999999654322 2223446677666664432 2339999999
Q ss_pred EEEeCCCce-eeEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEEE-ECCCCCeEEEEeCCEeccCC--CEE----
Q psy16863 423 LAENAVGRS-HCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAG--DIF---- 493 (1075)
Q Consensus 423 ~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~~--~~~---- 493 (1075)
.|+|..|.. +..+.|.|.+.+. .|...++.. +..|+.+.|+|.- .|.|.|.+.|.|||+++... .++
T Consensus 110 vasn~~g~avSr~a~L~vavlrd----dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lis 185 (1281)
T KOG4222|consen 110 VASNRLGEAVSRGASLIVAVLRD----DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALIS 185 (1281)
T ss_pred eecCccceeeecCceEEEEEech----hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEec
Confidence 999999976 3445666665443 344444443 6678999999984 58999999999999998722 222
Q ss_pred --EEEeCCCCCCCcEEEEEEEEecceeeEEE-EEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEE
Q psy16863 494 --ALTANPKDPSSLGTYTCEAVNCMGAAFST-SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL 570 (1075)
Q Consensus 494 --~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L 570 (1075)
.|.|.+++..|+|.|.|.+.|.+|...+. +++.|. .+|.|...+.+..+..|..+.|
T Consensus 186 gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~--------------------e~P~f~~rp~~~~v~~g~~~~f 245 (1281)
T KOG4222|consen 186 GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ--------------------EKPWFWKRPKDLAVLVGAAAEF 245 (1281)
T ss_pred CCcEEEeccccCCCceeeeeecccccccccccceeeec--------------------cCCccccccccceeeccccccc
Confidence 57789999999999999999999986654 567776 3678888899999999999999
Q ss_pred EEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcC
Q psy16863 571 ECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYR 650 (1075)
Q Consensus 571 ~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~ 650 (1075)
.|.+.|.|.| .+.|.+++..++ ..++.+..+. .+|.|.+++..|.|.|.|.+.|..|.... .+.+.|..|+.+.
T Consensus 246 ~c~v~GdP~P-~Vrwkk~~~~~P-~~ry~i~~d~---qtl~i~r~tp~deg~y~C~a~n~vG~l~a-sa~ltV~apP~f~ 319 (1281)
T KOG4222|consen 246 DCRVGGDPQP-TVRWKKDDPSLP-RSRYSILDDT---QTLRIDRVTPTDEGTYVCPAENLVGGLEA-SATLTVQAPPSFG 319 (1281)
T ss_pred ccccCCCCCC-ceeeeccCCCCC-ccceeeeecc---ccccccccCCCcccceeeecccccccccc-ccceEEecCcccc
Confidence 9999999988 899999777765 4567776653 48999999999999999999999998774 4688898886543
Q ss_pred CCceeeccceeeecCCeEEEEEEEecCCCCeEEEEECCEEcC--------CCCeEEE--------e--ecCCCceEEEEE
Q psy16863 651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELK--------PGDVYQL--------T--GTSSLGSYCCVA 712 (1075)
Q Consensus 651 ~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~--------~~~~~~~--------~--~~~d~G~Y~C~a 712 (1075)
+ ......+..|+.++|.|.+.|.|.|.+.|.|.|..-. ...+..+ + ...|.|.|.|..
T Consensus 320 k----kp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~ 395 (1281)
T KOG4222|consen 320 K----KPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQT 395 (1281)
T ss_pred c----ccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecc
Confidence 3 1223456678999999999999999999999765421 1112222 1 226889999999
Q ss_pred EecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC
Q psy16863 713 KNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES 792 (1075)
Q Consensus 713 ~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~ 792 (1075)
.|.+|.....+.+.+.+.. .....+|.+.....+++..++..+.|.|.+.|.|.|.+.|+|+|-.+...
T Consensus 396 ~~~~~ss~~~a~~~qt~~~-----------~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~ 464 (1281)
T KOG4222|consen 396 QTSAGSSLTKAYLEQTDVL-----------TDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP 464 (1281)
T ss_pred cccccccccceeEEEEeee-----------ccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccC
Confidence 9999988777666665421 11124667777888999999999999999999999999999999877544
Q ss_pred CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863 793 DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842 (1075)
Q Consensus 793 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 842 (1075)
+...... ....|+|.++...|.|.|+|+|.+..|+..-++.|.|...
T Consensus 465 d~~~s~~---~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~ 511 (1281)
T KOG4222|consen 465 DSRISQQ---EIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKA 511 (1281)
T ss_pred Cccccee---eeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhc
Confidence 3222111 2348999999999999999999999999999999999754
No 7
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=100.00 E-value=8.3e-27 Score=290.04 Aligned_cols=822 Identities=15% Similarity=0.171 Sum_probs=469.6
Q ss_pred EEEEEEcCCcceEeEEEEEEecc-----------------------ccccCCCCCcccccCCCCCccccceEEeccCceE
Q psy16863 38 YTCEAVNCMGAAFSTSRVIARGQ-----------------------QSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRT 94 (1075)
Q Consensus 38 Y~C~a~n~~g~~~~~~~v~v~~~-----------------------~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~ 94 (1075)
-...|.|.+++++.++.|.++.+ +++..+.++.|+|..++++.+ ++
T Consensus 870 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~w~~~d~~~~-----------~~ 938 (2740)
T TIGR00864 870 VDLMAENNASEANLSLLVQAEEPICGLRAQPHPAARVLMESLVRYSASVEAGSDMTFKWTIDDKPFF-----------TF 938 (2740)
T ss_pred EEEEEecccceeEEEEEEEeecccccccccCChhheeeeeeEEEeecccccCCcceEEEEeCCeeEE-----------EE
Confidence 34678999999999988887644 123456788899999988865 45
Q ss_pred EEEEcccccCCCeEEE--EEEEcCCeeEEEEEEEEEeecCCCcccceeeccee-------EEeeCCeEEEEEEecCCCee
Q psy16863 95 ELNIRRVRRDDGGRYS--VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI-------AVKVGTRARLLVEIRSPTEI 165 (1075)
Q Consensus 95 ~L~I~~~~~~d~G~Y~--c~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~-------~v~~G~~~~l~c~~~~~~~~ 165 (1075)
.-.+.++....++.|. .+|+|..+..+..+.++|+.. .++.++ .+..|..+.|..
T Consensus 939 ~~~~~n~~y~~a~~~~l~~ta~n~~s~~~~~~~vt~~~~--------~~m~~l~v~~~p~v~~~~~~~~~~~-------- 1002 (2740)
T TIGR00864 939 QNTVFNVIYQHAAVFKLSLTAMNHVSNLTEDFNVTVDRL--------NPMQGLQVKGVPAVLPPGATLALTA-------- 1002 (2740)
T ss_pred ecceEEEEeecccEEEEEEEEeccccceEEEEEEEehhc--------ccccccEEecCccccCCCceEEEee--------
Confidence 6677888999999995 899999998887777777632 223333 344566666543
Q ss_pred EEEEccCCCeeEEEeeCCCceec-------cCcEEEEecCCeEEEEEceec--cCCCeEEEE--EEEcCceeEEEEEEEe
Q psy16863 166 KCQFDLNNTIPFSFRAQGDHPIF-------GNRFRAINRDGRTELNIRRVR--RDDGGRYSV--TASNESGYSTAKFELS 234 (1075)
Q Consensus 166 ~c~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~L~I~~~~--~~D~G~Y~C--~a~n~~g~~~~~~~l~ 234 (1075)
...+++.....|.|.++|+.... ...+...+..-...|.=++++ ....|.|+. .|+|..|..+..+.+.
T Consensus 1003 ~~~vd~~~~~~~~w~fgDG~~~~~~~~~py~~~~~~~~~~~~q~l~eqnptH~Y~~~G~YTVtLtVsN~~~~it~~i~Vs 1082 (2740)
T TIGR00864 1003 GVLIDMAVEAAFLWNFGDGEQALFEFKPPYNESFPCPDPSPAQVLLEHNVMHIYAAPGEYLATVLASNAFENISQQINMS 1082 (2740)
T ss_pred eeEeecccceEEEEEeCCCCeeEEeccCCCcccccCCCCccceeecccCcceEECCCCcEEEEEEEEcCCCccceEEEEE
Confidence 33456677889999999876332 222322222223345555555 566799954 5688888888888888
Q ss_pred eeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc-CCCeEEEeeCCeEEEEEc
Q psy16863 235 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIR 313 (1075)
Q Consensus 235 V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~L~I~ 313 (1075)
|.. ..|.+.....+..+..|+++.|.....+.+ ....|.|.++|+.... +..-...+ ++
T Consensus 1083 V~~---~~p~v~~~~~p~~~~~g~tv~F~~~ss~s~---------~~~~y~WdFGDGs~~~t~~~~~~~H-----tY--- 1142 (2740)
T TIGR00864 1083 VRA---ILPRVAIGTEDGLLLAGKPADFEAHPLPSP---------GGIHYEWDFGDGSALLQGRQPAAAH-----TF--- 1142 (2740)
T ss_pred Eec---ccceeeeecCcccccCCceEEEeecccCCC---------CCcEEEeECCCCCcccccCCCcceE-----Ec---
Confidence 863 334455555666778899998876543321 3467899998876542 11101111 11
Q ss_pred ccCCCCCEEEEE--EEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecC
Q psy16863 314 RVRRDDGGRYSV--TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE 391 (1075)
Q Consensus 314 ~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~ 391 (1075)
...|.|+. .+.|..|.......+.+... .+.+.... ......|.++++........+....|-+++....
T Consensus 1143 ----~~~GtYtV~LTV~n~vgs~a~~t~v~v~~~---v~~itad~-s~~te~gaPlTV~~~~ssG~~~tW~WdFGDGtts 1214 (2740)
T TIGR00864 1143 ----AKRGPFHVCLEVNNTISGAAACADMFAFEE---IEGLSADM-SLATELGAATTVRAALQSGDNITWTFDMGDGKSL 1214 (2740)
T ss_pred ----cCCccEEEEEEEEcCCCCceeeEEEEEecc---cCceeeec-cCCccCCCceEEEEeecCCCccEEEEecCCCCcc
Confidence 45577754 45566665544444444421 11121111 1223446677766555333344555544443211
Q ss_pred CCCcEEEEEcCCEEEEEEcccCCCCceeEEEE--EEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEE
Q psy16863 392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL--AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK 469 (1075)
Q Consensus 392 ~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~--a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~ 469 (1075)
... ... ..+ +....|.|+.. +.|..|....+..+.|.+.+.. ...+......+..+.|.-.
T Consensus 1215 t~~------~~t-----~~H-tY~~~GtYTVtLTvtN~~G~~sts~~V~V~v~~V~-----g~~Ps~c~g~~~~v~Fta~ 1277 (2740)
T TIGR00864 1215 SGP------EAT-----VEH-KYAKAGNCTVNIGAANAAGHGARIIHVEVFVFEVA-----GIEPAACIGEHADANFRAR 1277 (2740)
T ss_pred ccC------CCC-----cee-EcCCCceEEEEEEEEcCCCCceeEEEEEEEeeecc-----cccCccccCCCcceEEEEE
Confidence 100 000 011 23457988765 6688887666655555443211 1111122233346888888
Q ss_pred EECCCCC-eEEEEeCCEeccCC----CEEEEEeCCCCCCCcEEEEEEEE--ecceeeEEEEEEEEeccccccCCCCCCcC
Q psy16863 470 VMGIPTP-QLIWYKDNKKIKAG----DIFALTANPKDPSSLGTYTCEAV--NCMGAAFSTSRVIARGQQSFLDNDDVPFN 542 (1075)
Q Consensus 470 ~~g~p~~-~v~W~~~g~~l~~~----~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~v~v~~~~~~~~~~~~~~~ 542 (1075)
+.|.|.. .+.|.+++...... .....+ -...|.|+.... |..+.......+.+.
T Consensus 1278 vsg~~~~y~y~WdFGDGt~~tt~~~~p~vtHT-----Yt~~GtYtVsLTVtn~vgk~~~it~VtV~-------------- 1338 (2740)
T TIGR00864 1278 VSGNAAHYLFDWSFGDGSPNETHHGCPGISHN-----FRGNGTFPLALTISSGVNKAHFFTQICVE-------------- 1338 (2740)
T ss_pred ecCCCcceEEEeeCCCCCccccccCCCcceEE-----cCCCCeEEEEEEEEcCCcceeEEEEEEec--------------
Confidence 8887765 57797765432211 111111 124689977655 443433222222221
Q ss_pred CCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEe----cCCcEEEEEcCCceEEEEEeeeeec
Q psy16863 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE----ASDKYHIMADGLGGYSIEINYLEAV 618 (1075)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~----~~~~~~~~~~~~~~~~L~i~~~~~~ 618 (1075)
.+.+.+........+..|..+.|.-.+... .+.++.|.++++... ........+...+.|++++.
T Consensus 1339 -----P~v~~vt~t~s~~~v~lG~tV~Ftatss~g-~~~sw~WDFGDG~ts~t~st~qNptHTY~~pGtYTVTLT----- 1407 (2740)
T TIGR00864 1339 -----PELGKISLQAEKQFFALGDEAQFQACAEPE-FNYRYEWDFGGEEAAPLPAAGAEVTFIYNDPGCYLVTVA----- 1407 (2740)
T ss_pred -----ccccceEecccccccccCCeEEEEEecCCC-CcEEEEEEeCCCCccccccCCCcceEEcCCCceEEEEEE-----
Confidence 011222222333345678899998766532 456899999876421 12233333344444444443
Q ss_pred CCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeecccee--eecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCe
Q psy16863 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV--MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDV 696 (1075)
Q Consensus 619 d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~--~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~ 696 (1075)
|.|..|... ....+.|..|. ..+.|....... +..+..+.|.-...|.| .++.|.+++.....+..
T Consensus 1408 --------VtN~~gs~T-~s~~I~V~~Pv--~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt~-~Sy~WdFGDGstst~qn 1475 (2740)
T TIGR00864 1408 --------ASNNISAAN-DSALIEVLEPV--GATSFKHNGSHGNNLELGQPYLFSAFGRARN-ASYLWDFGDGGLLEGPE 1475 (2740)
T ss_pred --------EECCCccee-eeeEEEEecCC--CcceeeecCCcccccccCcceEEeecCCCCc-eEEEEECCCCCccCccc
Confidence 667765443 33456665542 122333221111 22233444544334443 47999886655444444
Q ss_pred EEEeecCCCceEEE--EEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEec
Q psy16863 697 YQLTGTSSLGSYCC--VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774 (1075)
Q Consensus 697 ~~~~~~~d~G~Y~C--~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g 774 (1075)
..... ...|.|+. +|.|..|....+..++|.+. ...|........+..+.++.|+.....
T Consensus 1476 ptHtY-~~~GtYtVtLTvtN~~Gsst~T~~VtV~~p-----------------V~~~tinas~~~vpl~~sV~Fta~~s~ 1537 (2740)
T TIGR00864 1476 ILHAF-NSPGDFNIRLAAANEVGKNEATLNVAVKAR-----------------VRGLTINASLTNVPLNGSVHFEAHLDA 1537 (2740)
T ss_pred eEEEc-CCCceEEEEEEEECCCCceEEEEEEEEecc-----------------ccceEEcCCCccccccceEEEEEEccC
Confidence 44333 46899954 67899999888888887642 223333333445667788999876655
Q ss_pred CCCCeEEEEECCEEe--ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeee
Q psy16863 775 SPEPKVSWFRDDQQV--VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE 852 (1075)
Q Consensus 775 ~p~p~v~W~k~g~~i--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~ 852 (1075)
.....++|..++.-. ..+......+...|.+..++. |.|..|....+..+.|+.+-. .-.+..
T Consensus 1538 Gs~v~ysWdFGDg~ts~~~npt~~yTY~spGtYtVtLT-------------vtN~~Gs~~~T~~i~V~~~I~--GlqI~~ 1602 (2740)
T TIGR00864 1538 GDDVRFSWILCDHCTPIFGGNTIFYTFRSVGTFNIIVT-------------AENDVGAAQASIFLFVLQEIE--GLQILG 1602 (2740)
T ss_pred CCceeEEEEeCCCCccccCCCceEEeecCCceEEEEEE-------------EecCCCccceeEEEEEeeccc--ceEEEe
Confidence 556689998765322 122222233333444444444 889999998888888876421 112221
Q ss_pred e-----------c-ceeecCCCeEEEEEEEEccCCCeeEEEE------CCEEc-CCCCeeEEEECCCCceeeEEEE--EE
Q psy16863 853 E-----------L-KAVLSEGGAVNLECKVIGVPQPTLKWFK------DGREL-KAGDIHKIISGEDGTCCLGIYT--CE 911 (1075)
Q Consensus 853 ~-----------~-~~~~~~g~~~~L~C~v~g~p~p~v~W~k------~g~~l-~~~~~~~i~~~~~~~~d~G~Y~--C~ 911 (1075)
. + ...+..+..+.|...+....+..++|.. ||... ..|....+.. .++|.|. ..
T Consensus 1603 ~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~~~tGk~~~vt~-----~~pG~Y~VtL~ 1677 (2740)
T TIGR00864 1603 ETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAFAGSGKGAKLNP-----LEAGPCDIFLQ 1677 (2740)
T ss_pred ecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCccccccCceeEEec-----CCCceEEEEEE
Confidence 1 1 1346678899999988777777899955 12111 1222233322 2379994 59
Q ss_pred EEeCCeeEEEEEEEEEecCChhhhhhhcccceeeecCCCcceeeeceeeeEeeccCCccccceEEEEEc-CEEEEEEEe-
Q psy16863 912 AHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFD-GKEVSVSLY- 989 (1075)
Q Consensus 912 a~N~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-g~~~~~~~~- 989 (1075)
|+|..|..+.+..+.|+++...+........+.+ +..+.|...+..-....|+|.++ |..+..+.+
T Consensus 1678 aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aav------------n~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~ 1745 (2740)
T TIGR00864 1678 AANLLGQATADCTIDFLEPAGNLMLQASDNPAAV------------NALINLSAELAEGSGLQYRWFLEEGDDLETSEPF 1745 (2740)
T ss_pred EeecccceeeEEEEEEEEEcCceEEeccCCcccC------------CCeEEEEEEecCCCCcEEEEEECCCCCcccCCCc
Confidence 9999999999999999987766654333332222 22333433344345666888875 443332322
Q ss_pred eCCC-CChHHHHHHHHHhhhhhhhcccccceeecC
Q psy16863 990 ETPD-LTEEEAIKVVEMYADELSEHISDKNMIELP 1023 (1075)
Q Consensus 990 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1075)
.+|. .+++...+.+.+.+...++.++..|.|++|
T Consensus 1746 ~tHtf~~~G~y~VtVta~N~vss~~~s~~V~Vqep 1780 (2740)
T TIGR00864 1746 MSHSFPSAGLHLVTMKAFNELGSANASEEVDVQEP 1780 (2740)
T ss_pred eEEEccCCceEEEEEEEEccccccceeEEEEEEec
Confidence 3444 346666666778888888888888888888
No 8
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.97 E-value=4.4e-24 Score=266.09 Aligned_cols=885 Identities=15% Similarity=0.161 Sum_probs=474.2
Q ss_pred CceEEEeeCCEEeecCcEEEEeeCCCCCCCCeEEEE--EEEcCCcceEeEEEEEE-----------eccccccC------
Q psy16863 5 TPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTC--EAVNCMGAAFSTSRVIA-----------RGQQSFLD------ 65 (1075)
Q Consensus 5 ~p~v~W~k~g~~l~~~~~~~l~i~~~~~~D~G~Y~C--~a~n~~g~~~~~~~v~v-----------~~~~~~~~------ 65 (1075)
.|.++|+-|+++.=.-....| ++.-..++.|.. .|.|..+..+....|+| .|.|.++.
T Consensus 923 ~~~~~w~~~d~~~~~~~~~~~---n~~y~~a~~~~l~~ta~n~~s~~~~~~~vt~~~~~~m~~l~v~~~p~v~~~~~~~~ 999 (2740)
T TIGR00864 923 DMTFKWTIDDKPFFTFQNTVF---NVIYQHAAVFKLSLTAMNHVSNLTEDFNVTVDRLNPMQGLQVKGVPAVLPPGATLA 999 (2740)
T ss_pred cceEEEEeCCeeEEEEecceE---EEEeecccEEEEEEEEeccccceEEEEEEEehhcccccccEEecCccccCCCceEE
Confidence 478999999986522211111 233456788865 78899988887776654 34443332
Q ss_pred ---------CCCCcccccCCCCCc----cccceEEe--ccC-c-eEEEEEcccc--cCCCeEEE--EEEEcCCeeEEEEE
Q psy16863 66 ---------NDDVPFNRAQGDHPI----FGNRFRAI--NRD-G-RTELNIRRVR--RDDGGRYS--VTASNESGYSTAKF 124 (1075)
Q Consensus 66 ---------~~~v~~~~~~~g~~~----~~~~~~~~--~~~-~-~~~L~I~~~~--~~d~G~Y~--c~a~n~~g~~~~~~ 124 (1075)
..++.|.|.-|+-.. +...|... -.+ . ...|.=++++ +...|.|+ ..|.|.+|......
T Consensus 1000 ~~~~~~vd~~~~~~~~w~fgDG~~~~~~~~~py~~~~~~~~~~~~q~l~eqnptH~Y~~~G~YTVtLtVsN~~~~it~~i 1079 (2740)
T TIGR00864 1000 LTAGVLIDMAVEAAFLWNFGDGEQALFEFKPPYNESFPCPDPSPAQVLLEHNVMHIYAAPGEYLATVLASNAFENISQQI 1079 (2740)
T ss_pred EeeeeEeecccceEEEEEeCCCCeeEEeccCCCcccccCCCCccceeecccCcceEECCCCcEEEEEEEEcCCCccceEE
Confidence 134567775543221 11111100 000 0 0122223332 46689996 57789988877777
Q ss_pred EEEEeecCCCcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEE
Q psy16863 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 204 (1075)
Q Consensus 125 ~l~V~~~~~~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~ 204 (1075)
.+.|... .|.+.....+..+..|+++.|.....+.+ ....+.|.|+|+......+. .
T Consensus 1080 ~VsV~~~---~p~v~~~~~p~~~~~g~tv~F~~~ss~s~---------~~~~y~WdFGDGs~~~t~~~-----------~ 1136 (2740)
T TIGR00864 1080 NMSVRAI---LPRVAIGTEDGLLLAGKPADFEAHPLPSP---------GGIHYEWDFGDGSALLQGRQ-----------P 1136 (2740)
T ss_pred EEEEecc---cceeeeecCcccccCCceEEEeecccCCC---------CCcEEEeECCCCCcccccCC-----------C
Confidence 7777642 23344455566778899999987754432 23578999988754321110 0
Q ss_pred EceeccCCCeEEEE--EEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCe
Q psy16863 205 IRRVRRDDGGRYSV--TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI 282 (1075)
Q Consensus 205 I~~~~~~D~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~ 282 (1075)
-...+....|.|+. .+.|..|.......+.+...+ +.+.... ......|.++++.... ..+.++
T Consensus 1137 ~~~HtY~~~GtYtV~LTV~n~vgs~a~~t~v~v~~~v---~~itad~-s~~te~gaPlTV~~~~----------ssG~~~ 1202 (2740)
T TIGR00864 1137 AAAHTFAKRGPFHVCLEVNNTISGAAACADMFAFEEI---EGLSADM-SLATELGAATTVRAAL----------QSGDNI 1202 (2740)
T ss_pred cceEEccCCccEEEEEEEEcCCCCceeeEEEEEeccc---Cceeeec-cCCccCCCceEEEEee----------cCCCcc
Confidence 01346677888844 556776665555555544321 1111111 1112234444443222 235567
Q ss_pred eeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEE--EEEeCCeeEEEEEEEEEecCCCCCCeeeeecCcee
Q psy16863 283 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSV--TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 360 (1075)
Q Consensus 283 ~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~ 360 (1075)
.|.|.++|+....+..-. ..+.. ...|.|+. .|.|..|.......+.|.. .+ +........
T Consensus 1203 tW~WdFGDGttst~~~~t-----------~~HtY-~~~GtYTVtLTvtN~~G~~sts~~V~V~v----~~-V~g~~Ps~c 1265 (2740)
T TIGR00864 1203 TWTFDMGDGKSLSGPEAT-----------VEHKY-AKAGNCTVNIGAANAAGHGARIIHVEVFV----FE-VAGIEPAAC 1265 (2740)
T ss_pred EEEEecCCCCccccCCCC-----------ceeEc-CCCceEEEEEEEEcCCCCceeEEEEEEEe----ee-cccccCccc
Confidence 888888887654321100 00111 34577754 5678888655555544432 11 111111122
Q ss_pred eccCCeEEEEEEEecCCCc-EEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 361 VKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 361 v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
...+..+.|...+.+++.. .+.|-+++...... ..+.....+ +....|.|+..++...+.........|
T Consensus 1266 ~g~~~~v~Fta~vsg~~~~y~y~WdFGDGt~~tt------~~~~p~vtH----TYt~~GtYtVsLTVtn~vgk~~~it~V 1335 (2740)
T TIGR00864 1266 IGEHADANFRARVSGNAAHYLFDWSFGDGSPNET------HHGCPGISH----NFRGNGTFPLALTISSGVNKAHFFTQI 1335 (2740)
T ss_pred cCCCcceEEEEEecCCCcceEEEeeCCCCCcccc------ccCCCcceE----EcCCCCeEEEEEEEEcCCcceeEEEEE
Confidence 3334568888888776643 57787766432111 000000011 345788888776544333332333334
Q ss_pred ecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc----CCCEEEEEeCCCCCCCcEEEEE--EE
Q psy16863 440 LVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK----AGDIFALTANPKDPSSLGTYTC--EA 512 (1075)
Q Consensus 440 ~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~----~~~~~~l~i~~~~~~d~G~Y~C--~a 512 (1075)
.+.|.. +.+.... ...+..|.++.|.-...+.....+.|.+++..-. .+.....++. ..|.|+. .|
T Consensus 1336 tV~P~v--~~vt~t~s~~~v~lG~tV~Ftatss~g~~~sw~WDFGDG~ts~t~st~qNptHTY~-----~pGtYTVTLTV 1408 (2740)
T TIGR00864 1336 CVEPEL--GKISLQAEKQFFALGDEAQFQACAEPEFNYRYEWDFGGEEAAPLPAAGAEVTFIYN-----DPGCYLVTVAA 1408 (2740)
T ss_pred Eecccc--cceEecccccccccCCeEEEEEecCCCCcEEEEEEeCCCCccccccCCCcceEEcC-----CCceEEEEEEE
Confidence 444322 1222111 2235668888888766543345888988765421 1122222322 3588865 45
Q ss_pred EecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccc-eEeecCCeEEEEEEEecCCCCceEEEEeCCeE
Q psy16863 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVEN-VKAKIGTSAILECQVLVPPWPRSIYWYNKEGV 591 (1075)
Q Consensus 513 ~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~ 591 (1075)
.|..|....+..+.|..+ .+...|...... ..+..|..+.|.-...+. +.++.|.++++.
T Consensus 1409 tN~~gs~T~s~~I~V~~P-----------------v~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt--~~Sy~WdFGDGs 1469 (2740)
T TIGR00864 1409 SNNISAANDSALIEVLEP-----------------VGATSFKHNGSHGNNLELGQPYLFSAFGRAR--NASYLWDFGDGG 1469 (2740)
T ss_pred ECCCcceeeeeEEEEecC-----------------CCcceeeecCCcccccccCcceEEeecCCCC--ceEEEEECCCCC
Confidence 677776666666776521 011122111110 012334455554333333 468999998886
Q ss_pred EecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEE
Q psy16863 592 VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671 (1075)
Q Consensus 592 i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~ 671 (1075)
..........+...+.|++++. +.|..|.... ...+.|..|. ....+ ......+..++.+.|+
T Consensus 1470 tst~qnptHtY~~~GtYtVtLT-------------vtN~~Gsst~-T~~VtV~~pV--~~~ti-nas~~~vpl~~sV~Ft 1532 (2740)
T TIGR00864 1470 LLEGPEILHAFNSPGDFNIRLA-------------AANEVGKNEA-TLNVAVKARV--RGLTI-NASLTNVPLNGSVHFE 1532 (2740)
T ss_pred ccCccceEEEcCCCceEEEEEE-------------EECCCCceEE-EEEEEEeccc--cceEE-cCCCccccccceEEEE
Confidence 5444444444444444444443 7888888653 3455555442 11111 1112234456678888
Q ss_pred EEEecCCCCeEEEEECCEEc-CCCCeEEEeecCCCceE--EEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCC
Q psy16863 672 CKVVGFPTPTLQWFKDNEEL-KPGDVYQLTGTSSLGSY--CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKA 748 (1075)
Q Consensus 672 C~v~g~p~p~v~W~k~g~~l-~~~~~~~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~ 748 (1075)
-........++.|.+++... ..............|.| +.+|.|..|....+..+.|++....+ .+... ..
T Consensus 1533 a~~s~Gs~v~ysWdFGDg~ts~~~npt~~yTY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~Gl------qI~~~-~~ 1605 (2740)
T TIGR00864 1533 AHLDAGDDVRFSWILCDHCTPIFGGNTIFYTFRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGL------QILGE-TA 1605 (2740)
T ss_pred EEccCCCceeEEEEeCCCCccccCCCceEEeecCCceEEEEEEEecCCCccceeEEEEEeecccce------EEEee-cc
Confidence 65543344589999855322 22222223334567999 55679999999888888887521110 00000 00
Q ss_pred CeE---EeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE--E
Q psy16863 749 PKF---IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC--I 823 (1075)
Q Consensus 749 p~~---~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C--~ 823 (1075)
+.. ...+....+..|..+.|+..+....+..++|-..+..-..+..+ ........++. .+.|.|.. .
T Consensus 1606 ~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~---~~tGk~~~vt~-----~~pG~Y~VtL~ 1677 (2740)
T TIGR00864 1606 EGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAF---AGSGKGAKLNP-----LEAGPCDIFLQ 1677 (2740)
T ss_pred cccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCccc---cccCceeEEec-----CCCceEEEEEE
Confidence 000 01122345677888999988876677799996511100000000 01111222222 45566654 5
Q ss_pred EEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEE-CCEEcCCCCeeEEEECCCCc
Q psy16863 824 ATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK-DGRELKAGDIHKIISGEDGT 902 (1075)
Q Consensus 824 A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k-~g~~l~~~~~~~i~~~~~~~ 902 (1075)
|+|.+|....+..+.|+.|..-.. +..-...+..|+.++|...+.+.+..+++|.. ||...........+....
T Consensus 1678 aSN~vG~~t~s~~i~v~epi~~L~---L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~tHtf~~-- 1752 (2740)
T TIGR00864 1678 AANLLGQATADCTIDFLEPAGNLM---LQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFMSHSFPS-- 1752 (2740)
T ss_pred EeecccceeeEEEEEEEEEcCceE---EeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCceEEEccC--
Confidence 889999999999999987642211 11112235678999999999888899999975 453332222222222222
Q ss_pred eeeEEEEE--EEEeCCeeEEEEEEEEEecCChhhhhhhcccceeeecCCCcceeeeceeeeEeeccCCccccceEEEEE-
Q psy16863 903 CCLGIYTC--EAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSF- 979 (1075)
Q Consensus 903 ~d~G~Y~C--~a~N~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~- 979 (1075)
.|.|.+ .|.|..|+...+..+.|+++...+.+.. .+.....+.+.+....|...++ .+..++|.|
T Consensus 1753 --~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~--------~~~~~~~~~~ag~~v~F~a~vs--tGsnVsw~W~ 1820 (2740)
T TIGR00864 1753 --AGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRA--------ADAGEQNFFAADSSVCFQGELA--TGTNVSWCWA 1820 (2740)
T ss_pred --CceEEEEEEEEccccccceeEEEEEEeccccceEec--------CCCCcccceecCcEEEEEEEcc--CCCeeEEEEE
Confidence 699955 9999999999999999988766554321 1111222344566677777766 566666666
Q ss_pred -cCEEEEEEEeeCCCCChHHHHHH---HHHhhhhhhhcccccceeecCCeeEEeeccc
Q psy16863 980 -DGKEVSVSLYETPDLTEEEAIKV---VEMYADELSEHISDKNMIELPPLRFTKESSR 1033 (1075)
Q Consensus 980 -~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1075)
+|..-... -....|..++|.| +.+.++..+..++-.+.||+|........+.
T Consensus 1821 f~~g~s~~g--k~v~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~ 1876 (2740)
T TIGR00864 1821 IDGGSSKMG--KHACMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASK 1876 (2740)
T ss_pred eCCCCcccc--ceeEEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEeccc
Confidence 44331111 1112556666665 4556777788888899999998655555443
No 9
>KOG4194|consensus
Probab=99.96 E-value=3e-28 Score=256.87 Aligned_cols=280 Identities=22% Similarity=0.359 Sum_probs=225.2
Q ss_pred CcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceec-----cCcEEEEecCC--------e
Q psy16863 134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-----GNRFRAINRDG--------R 200 (1075)
Q Consensus 134 ~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~~~--------~ 200 (1075)
+.|.+...+.++....|+.++|+|.+.++. ..+..+.|+++...+.. .-++......+ .
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sss--------asplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~ 573 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSS--------ASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYT 573 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCC--------CCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhh
Confidence 467788888888888899999999988753 35678999998753221 11222222111 3
Q ss_pred EEEEEceeccCCCeEEEEEEEcCceeE-EEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecC
Q psy16863 201 TELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN 279 (1075)
Q Consensus 201 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~ 279 (1075)
..|.+.|++..|+|.|+|.++|..|+. +..++++|. ..|.|.+.|.++++..|+.+.|.|.+.+ .
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~----~~PsFtktP~dltl~tg~mArl~CaAtG----------~ 639 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN----QAPSFTKTPEDLTLRTGQMARLECAATG----------H 639 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEee----ccCccccCcccceeecccceeeeeeccC----------C
Confidence 479999999999999999999999987 668888887 5699999999999999999999876654 5
Q ss_pred CCeeeEEecCCCcccc---CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeec
Q psy16863 280 NTIPFSFRAQGDHPIF---GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 356 (1075)
Q Consensus 280 ~~~~~~w~~~~~~~~~---~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~ 356 (1075)
|.+.+.|.+.|+...+ ..|..+..+++ .+.|.+++.+|+|.|+|.|.|.+|..+..+.|+|.. .|.|..++
T Consensus 640 P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----~p~f~~PL 713 (873)
T KOG4194|consen 640 PRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----TPSFSIPL 713 (873)
T ss_pred CCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEec----CCcccccc
Confidence 6778889888887655 33444544444 699999999999999999999999999999999995 88888899
Q ss_pred CceeeccCCeEEEEEEEecCCC-cEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTE-IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~ 435 (1075)
.+..|..|+.+.|.|...+.|+ |.+.|+|++++|.-.++.....++ ..|.+.+...+|+|.|+|..+|..|......
T Consensus 714 ~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~d--Qllvv~~~~~~daG~yTcem~~~~~~~~~~i 791 (873)
T KOG4194|consen 714 EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGD--QLLVVKENLVEDAGIYTCEMSNTLGTERIHI 791 (873)
T ss_pred cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCC--eEEEEEehhhhhcceEEEEEEeeccceeeEE
Confidence 9999999999999999988876 999999999998755554433333 3478889999999999999999999887766
Q ss_pred EEEeecCC
Q psy16863 436 ELSVLVPK 443 (1075)
Q Consensus 436 ~l~V~~~~ 443 (1075)
.+.+...+
T Consensus 792 ~l~~~~~~ 799 (873)
T KOG4194|consen 792 CLLVYQKK 799 (873)
T ss_pred EEEEeecC
Confidence 66665543
No 10
>KOG4194|consensus
Probab=99.96 E-value=1.9e-27 Score=250.87 Aligned_cols=272 Identities=23% Similarity=0.434 Sum_probs=214.6
Q ss_pred CCCCCCCCeeeeeccceEeecCCeEEEEEEEecC-CCCceEEEEeCCeEEecC-----CcEE-EEEcCC------ceEEE
Q psy16863 544 LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEAS-----DKYH-IMADGL------GGYSI 610 (1075)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~-----~~~~-~~~~~~------~~~~L 610 (1075)
++...+.|.+...|..+....|+.++|+|.+.+. ..|.++.|.+++...+.- -.+. ...+|. -...|
T Consensus 497 vC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L 576 (873)
T KOG4194|consen 497 VCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAIL 576 (873)
T ss_pred eecCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhhee
Confidence 3445577888888999999999999999999763 346699999987633211 1110 010110 12358
Q ss_pred EEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeecccee-eecCCeEEEEEEEecCCCCeEEEEECCE
Q psy16863 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV-MTDDGLVSFECKVVGFPTPTLQWFKDNE 689 (1075)
Q Consensus 611 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~-~~~g~~~~l~C~v~g~p~p~v~W~k~g~ 689 (1075)
.+.++...|+|.|.|+++|..|..-...+.+.|... |.|...+.+. +..|..+.|.|.++|.|.|.+.|.|+|.
T Consensus 577 ~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~-----PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdgg 651 (873)
T KOG4194|consen 577 HLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA-----PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGG 651 (873)
T ss_pred eeeeeecccCceEEEEEecccCcchhheeEEEeecc-----CccccCcccceeecccceeeeeeccCCCCcceeehhcCC
Confidence 999999999999999999999998766677888765 5555544443 5678899999999999999999999876
Q ss_pred E-c-----------CCCCeEEEee--cCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEecc
Q psy16863 690 E-L-----------KPGDVYQLTG--TSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755 (1075)
Q Consensus 690 ~-l-----------~~~~~~~~~~--~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 755 (1075)
. . +.++.|-++. .+|.|.|+|+|.|.+|..+.+++|+|.+ .|.|..++
T Consensus 652 tdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e------------------~p~f~~PL 713 (873)
T KOG4194|consen 652 TDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE------------------TPSFSIPL 713 (873)
T ss_pred CCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec------------------CCcccccc
Confidence 5 2 2344555553 4799999999999999999999999984 78899999
Q ss_pred ceeeeecCCeEEEEEEEecCCC-CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863 756 KSCQATVNEEFKFTVQVSISPE-PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s 834 (1075)
.+..+..|+++.|+|.+.|.|. |.+.|+|++++|.-..+.... ++...|++.+...+|+|+|+|+..|..|.....
T Consensus 714 ~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~---d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~ 790 (873)
T KOG4194|consen 714 EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFP---DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIH 790 (873)
T ss_pred cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCC---CCCeEEEEEehhhhhcceEEEEEEeeccceeeE
Confidence 9999999999999999999987 999999999999766654442 345589999999999999999999999987776
Q ss_pred EEEEEEe
Q psy16863 835 CFLKLNV 841 (1075)
Q Consensus 835 ~~l~V~~ 841 (1075)
..+.+..
T Consensus 791 i~l~~~~ 797 (873)
T KOG4194|consen 791 ICLLVYQ 797 (873)
T ss_pred EEEEEee
Confidence 6665543
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=250.11 Aligned_cols=236 Identities=17% Similarity=0.244 Sum_probs=168.6
Q ss_pred eecCCeEEEEEEE-----ecCCCCeEEEEECCEEc------CCCCeEEEe--ecCCCceEEEEEEecCceEEEEEEEEEE
Q psy16863 662 MTDDGLVSFECKV-----VGFPTPTLQWFKDNEEL------KPGDVYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIE 728 (1075)
Q Consensus 662 ~~~g~~~~l~C~v-----~g~p~p~v~W~k~g~~l------~~~~~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 728 (1075)
..+|+.+.|.|.+ .|.|.++++|+|+|... ..+..+.+. ..+|+|.|+|.|.|..|....++.|.|.
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~ 117 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIV 117 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEE
Confidence 3468899999997 68899999999987531 123333332 3479999999999999988888888887
Q ss_pred eccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEE-----EecCCCCeEEEEECCEEeecCCcEEEEEeeCc
Q psy16863 729 DIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQ-----VSISPEPKVSWFRDDQQVVESDNVKILKETLG 803 (1075)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-----v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~ 803 (1075)
.. .+|.|...+....+.+|..+.|.|. ..+.|+|.++|+|++. + .+.++... .
T Consensus 118 ~~----------------~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~--~-- 175 (326)
T PHA02785 118 SV----------------SESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR--T-- 175 (326)
T ss_pred ec----------------CCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec--C--
Confidence 52 1222322233345778999999997 3467999999998753 3 33444332 1
Q ss_pred EEEEEEccccCCCCeEEEEEEEeCCceEEEEE--EEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCC---ee
Q psy16863 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSC--FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP---TL 878 (1075)
Q Consensus 804 ~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~--~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p---~v 878 (1075)
...|.|.+++.+|+|.|+|.|.|.+|....+. .+.+.+.....+|.+..+....+..|+.++|.|.+.|.|.+ .|
T Consensus 176 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v 255 (326)
T PHA02785 176 PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADV 255 (326)
T ss_pred CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence 23799999999999999999999998765432 22333322334454433333346679999999999999874 79
Q ss_pred EEEECCEEcCCCC----------------------eeEEEECCCCceeeEEEEEEEEeCCeeE
Q psy16863 879 KWFKDGRELKAGD----------------------IHKIISGEDGTCCLGIYTCEAHNCMGTT 919 (1075)
Q Consensus 879 ~W~k~g~~l~~~~----------------------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~ 919 (1075)
.|+|||..|...+ ...|.+......|+|.|+|.|.|..|..
T Consensus 256 ~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 256 FWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred EEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 9999999885421 1245666777789999999999988544
No 12
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=2.7e-24 Score=232.23 Aligned_cols=250 Identities=16% Similarity=0.257 Sum_probs=177.6
Q ss_pred eeeccCCeEEEEEEE-----ecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863 359 IAVKVGTRARLLVEI-----RSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC 433 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~-----~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~ 433 (1075)
..+.+|+++.|.|.+ .|.|.++++|+|+|.... +.....+|. .|.|.++..+|+|.|+|.|.|..|....
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~--~l~i~~~~~~DsG~Y~C~a~N~~g~~~~ 110 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGS--NMLILNPTQSDSGIYICITKNETYCDMM 110 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCc--eEEEcccCcccCeEEEEEEECCCcceEE
Confidence 355689999999997 688889999999985322 222223333 3668999999999999999999998888
Q ss_pred EEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEE-----EECCCCCeEEEEeCCEeccCCC-----EEEEEeCCCCC
Q psy16863 434 SCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECK-----VMGIPTPQLIWYKDNKKIKAGD-----IFALTANPKDP 502 (1075)
Q Consensus 434 s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~-----~~g~p~~~v~W~~~g~~l~~~~-----~~~l~i~~~~~ 502 (1075)
++.|+|..... +.+. ......+.+|..+.|.|. ..+.|++.++|+++.. +.... ...|.|.++..
T Consensus 111 s~~L~V~~~~~---~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~ 186 (326)
T PHA02785 111 SLNLTIVSVSE---SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQRTPGIITIEDVRK 186 (326)
T ss_pred EEEEEEEecCC---CccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEecCCCeEEEeecCh
Confidence 88888875432 1111 111233668999999997 3467889999998653 32211 23688999999
Q ss_pred CCcEEEEEEEEecceeeEEEE----EEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCC
Q psy16863 503 SSLGTYTCEAVNCMGAAFSTS----RVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPP 578 (1075)
Q Consensus 503 ~d~G~Y~C~a~n~~g~~~~~~----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p 578 (1075)
+|+|.|+|.|.|..|...... .+.|.. ...||.+ ..+....+..|+.++|.|.+.+.|
T Consensus 187 ~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~-----------------~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P 248 (326)
T PHA02785 187 NDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD-----------------RIIPPTM-QLPEGVVTSIGSNLTIACRVSLRP 248 (326)
T ss_pred hhCeEEEEEEEeccCCEEEeEEEEEEEEEec-----------------cCCCcee-cCCCcEEecCCCcEEEEEEEECCC
Confidence 999999999999988765433 333321 1123433 334667788899999999999887
Q ss_pred CC--ceEEEEeCCeEEecCC-----cEEEEEcC-------CceEEEEEeeeeecCCceEEEEEECCCCcee
Q psy16863 579 WP--RSIYWYNKEGVVEASD-----KYHIMADG-------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQ 635 (1075)
Q Consensus 579 ~p--~~v~W~~~~~~i~~~~-----~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 635 (1075)
.+ ..+.|+++|..+...+ ++...... .....|+|.+++.+|+|.|+|.|.|..|...
T Consensus 249 ~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 249 PTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred CCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 64 3799999998775321 22221110 0124799999999999999999999886543
No 13
>KOG3515|consensus
Probab=99.93 E-value=2.8e-24 Score=241.15 Aligned_cols=605 Identities=19% Similarity=0.196 Sum_probs=359.5
Q ss_pred eeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCe
Q psy16863 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 332 (1075)
Q Consensus 253 ~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 332 (1075)
.+.+|+.+.|.|.+.+. .+.+.+.|++.+.... .++..... .+|.......+.-+.|.|+|.|..+
T Consensus 18 ~~~~g~~v~l~C~v~~~---------pp~~~~eW~h~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~c~a~ns~~ 83 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSN---------PPEIDVEWYHSTSGEH--GRYATIAD---PTLVTTGDVRDTVAELNCRAFNSVG 83 (741)
T ss_pred hhccCCcceeeeecCCC---------CCCcceEEEecCcccc--cccccccC---Cceeeecchhhhhhhhhhhhccccc
Confidence 78899999999888764 3566788887765444 33333322 2688888888889999999999755
Q ss_pred e-EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEE--ecCCCcEEEEEECCEecCCCC--cEEEE---EcC--
Q psy16863 333 Y-STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI--RSPTEIKIHWYRNDRKLEENK--IYRTQ---HDG-- 402 (1075)
Q Consensus 333 ~-~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~--~g~p~~~v~W~k~g~~l~~~~--~~~~~---~~g-- 402 (1075)
. ......+.|.. +|.-...........+..+.+.|.+ .+.|.++++|..++....... +.... ..+
T Consensus 84 ~~~~~~~~l~v~~----~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~ 159 (741)
T KOG3515|consen 84 MPSRCPMILDVDY----PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSY 159 (741)
T ss_pred Cceecceeecccc----CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCcee
Confidence 4 44555566654 5555555555666788899999965 457788999999986543221 11110 111
Q ss_pred -CEEEEEEcccCCCCceeEEEEEEeCC---CceeeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEE-CCCCC
Q psy16863 403 -NFYFIDLSSVSLFDSGRWTCLAENAV---GRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVM-GIPTP 476 (1075)
Q Consensus 403 -~~~~L~I~~v~~~d~G~Y~C~a~n~~---g~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~-g~p~~ 476 (1075)
....|.+.....++.|.|+|.|.|.. +..... +.+.+.............. ..+.+|+.+.|.|.+. |+|.+
T Consensus 160 t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~--~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~ 237 (741)
T KOG3515|consen 160 TEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQ--LTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQ 237 (741)
T ss_pred ccccceeeEEEEecCCceeEcccccccCccccccce--eEeecccccccceecchhhcCcccccceEEEEehhhcCCcch
Confidence 12357777788999999999999843 333323 3344333333323322222 3478999999999765 68999
Q ss_pred eEEEEeCCEeccCCC-----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCC
Q psy16863 477 QLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLM 545 (1075)
Q Consensus 477 ~v~W~~~g~~l~~~~-----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 545 (1075)
.++|+++......+. ...+....-...+.-...|.+.| .+. .+..+.+..
T Consensus 238 ~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~--~~~~tav~~---------------- 298 (741)
T KOG3515|consen 238 QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLA--ASQITAVQV---------------- 298 (741)
T ss_pred hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccc--cceeeeccc----------------
Confidence 999999988775431 11222222233334456799998 111 112222221
Q ss_pred CCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEE-EE--cCCceEEEEEeeeeecCCce
Q psy16863 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHI-MA--DGLGGYSIEINYLEAVDDGE 622 (1075)
Q Consensus 546 ~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~-~~--~~~~~~~L~i~~~~~~d~G~ 622 (1075)
++...........+..|++..+.|...+..++..+.|+++......+....- .. -+.....+........|.|.
T Consensus 299 ---~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~ 375 (741)
T KOG3515|consen 299 ---KPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQ 375 (741)
T ss_pred ---ccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCce
Confidence 1111111223334778999999998877666679999996554432221110 00 01122345666778889999
Q ss_pred EEEEEECCCCceeeee-EEEEEeCCCCcCCCceeecc-cee-eecCCeEEEEEEEecCC-CCeEEEEECCEEcCCCCe--
Q psy16863 623 WKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESL-KAV-MTDDGLVSFECKVVGFP-TPTLQWFKDNEELKPGDV-- 696 (1075)
Q Consensus 623 Y~C~a~n~~g~~~~~~-~~l~v~~p~~~~~p~~~~~~-~~~-~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~l~~~~~-- 696 (1075)
|+|.|.|.......++ ..+.+.. +|.|+..- ..+ ..+.+.....-.+.+.| .+.+.|.+++-++.+-..
T Consensus 376 v~c~a~~~~~~~~sss~~~l~~l~-----~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~ 450 (741)
T KOG3515|consen 376 VTCPADNLELAHSSSSSFLLPVLP-----SPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGV 450 (741)
T ss_pred EEccccccccccccccceeccccC-----CchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCce
Confidence 9999998874433222 2222222 23333221 112 22333333333333554 468999998877764322
Q ss_pred EEE-----------eecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCe
Q psy16863 697 YQL-----------TGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765 (1075)
Q Consensus 697 ~~~-----------~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 765 (1075)
+.+ ....|.|.|.|+|.|..|.+.....+.+.. .|.....-.......|.+
T Consensus 451 ~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~------------------sp~~~~~~~~~~~~~~ns 512 (741)
T KOG3515|consen 451 VRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT------------------SPHNHHLQDQVEGATGNS 512 (741)
T ss_pred EEeeccccccccceeeeccCCcceeeeccCCCceeeEEeecccc------------------CCcccccccccccCCCCc
Confidence 221 134689999999999999998877766663 333332222344556777
Q ss_pred EEEEEEEecCCC--CeEEEEECCEEeecCCcEEE-EEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863 766 FKFTVQVSISPE--PKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842 (1075)
Q Consensus 766 ~~l~C~v~g~p~--p~v~W~k~g~~i~~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 842 (1075)
+.+.|.....|. -.+.|.|.|.+......-.. .........|.+......-+|+|.|.+.|..-.+...-.+.+..+
T Consensus 513 ~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~ 592 (741)
T KOG3515|consen 513 VDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSA 592 (741)
T ss_pred ccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEeccc
Confidence 999999988773 36899998876532110000 000112346777777777889999999992222333344444322
Q ss_pred CCCCCCeeeeecceeecCCC-eEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCcee-------------eEEE
Q psy16863 843 KHYKKPKFLEELKAVLSEGG-AVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC-------------LGIY 908 (1075)
Q Consensus 843 ~~~~~p~~~~~~~~~~~~g~-~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d-------------~G~Y 908 (1075)
+....+ .++.....+|. .++..|.+.|.|.+.++|-|++.....+......-...+..+ -+..
T Consensus 593 ~~v~~~---tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~ 669 (741)
T KOG3515|consen 593 LIVTVR---TPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYEN 669 (741)
T ss_pred cccccc---CCceeeeccCcccccccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcc
Confidence 211110 11111122332 789999999999999999999887655544332111111111 1237
Q ss_pred EEEEEeCCeeEEEEEEE
Q psy16863 909 TCEAHNCMGTTSSSAAL 925 (1075)
Q Consensus 909 ~C~a~N~~G~~~~~~~l 925 (1075)
.|.+.|.+|+.-.+..+
T Consensus 670 ~c~t~n~lg~~~v~~~~ 686 (741)
T KOG3515|consen 670 GCTTQNLLGSDHVSGAI 686 (741)
T ss_pred eeeecccCCCcccccee
Confidence 99999999988665544
No 14
>KOG3515|consensus
Probab=99.92 E-value=1.3e-23 Score=235.89 Aligned_cols=616 Identities=17% Similarity=0.148 Sum_probs=360.7
Q ss_pred cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCCeEEEEEEE
Q psy16863 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTAS 221 (1075)
Q Consensus 142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 221 (1075)
+.. .+..|+.+.|.|.+.+ ++|.+.+.|++.+.... +++..+.+. .|...+...+.-++|.|+|.
T Consensus 15 l~~-~~~~g~~v~l~C~v~~---------~pp~~~~eW~h~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~ 79 (741)
T KOG3515|consen 15 LTV-GLRLGEDVPLPCRVNS---------NPPEIDVEWYHSTSGEH--GRYATIADP---TLVTTGDVRDTVAELNCRAF 79 (741)
T ss_pred CCh-hhccCCcceeeeecCC---------CCCCcceEEEecCcccc--cccccccCC---ceeeecchhhhhhhhhhhhc
Confidence 444 8889999999998876 34678899999875444 444433332 67788888888899999999
Q ss_pred cCceeEE-EEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCC--C
Q psy16863 222 NESGYST-AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN--R 298 (1075)
Q Consensus 222 n~~g~~~-~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~--~ 298 (1075)
|..+... ....+.|. .+|.-...+.......+..+.+.|.+..+. .+...+.|+++........ .
T Consensus 80 ns~~~~~~~~~~l~v~----~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~--------~P~~nlrW~~n~r~e~~~~~~~ 147 (741)
T KOG3515|consen 80 NSVGMPSRCPMILDVD----YPPACLPELGEIFQVDKGVVQIICSAKVAG--------RPNPNLRWGFNNRAELNAVNQR 147 (741)
T ss_pred ccccCceecceeeccc----cCccccccccchhhhcCCeEEEEEeecCCC--------CCCcceeeeeccEEeecccCCc
Confidence 9855442 33334443 445444445555566777788877655432 3556677777665444311 1
Q ss_pred eEEE---ee---CCeEEEEEcccCCCCCEEEEEEEEeC---CeeEEEEEEEEEecCCCCCCeeee-ecCceeeccCCeEE
Q psy16863 299 FRAI---NR---DGRTELNIRRVRRDDGGRYSVTASNE---SGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRAR 368 (1075)
Q Consensus 299 ~~~~---~~---~~~~~L~I~~~~~~d~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~p~~~~-~~~~~~v~~G~~v~ 368 (1075)
..+. .. .....|++...+.++.|.|+|.|.|. .+.......+.|.. +.....+. ...-..+.+|+.+.
T Consensus 148 ~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~--~~~~~~~~~~~~~qsF~~g~~in 225 (741)
T KOG3515|consen 148 GRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEA--PCKGIGITGAQEQQSFTEGQTIN 225 (741)
T ss_pred ccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccc--ccccceecchhhcCcccccceEE
Confidence 1111 00 11336888888999999999999994 33333333333332 22222222 22336789999999
Q ss_pred EEEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCCE--EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCC
Q psy16863 369 LLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNF--YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY 445 (1075)
Q Consensus 369 l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~--~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~ 445 (1075)
|.|.+ .|+|.+.++||++...+..+.......++.. +.+.+..-..++.-...|.+.| ....+..+.+..++.-
T Consensus 226 lvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~ 302 (741)
T KOG3515|consen 226 LVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPTA 302 (741)
T ss_pred EEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeeccccccc
Confidence 99986 5688999999999987755422212222221 2333332233334467799998 1222333444444321
Q ss_pred CCCeeeeecceEEecCCeEEEEEEEE-CCCCCeEEEEeCCEeccCCC-------------EEEEEeCCCCCCCcEEEEEE
Q psy16863 446 KAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGD-------------IFALTANPKDPSSLGTYTCE 511 (1075)
Q Consensus 446 ~~p~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~l~~~~-------------~~~l~i~~~~~~d~G~Y~C~ 511 (1075)
. .+... ...+..|....+.|... ++|...+.|+|+.+...... ...+........|.|.|+|.
T Consensus 303 ~--~Ist~-~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~ 379 (741)
T KOG3515|consen 303 V--PISTS-DSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCP 379 (741)
T ss_pred c--cccCc-ccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcc
Confidence 1 11111 11266788889988854 67888999999766653221 12344556678889999999
Q ss_pred EEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeE
Q psy16863 512 AVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV 591 (1075)
Q Consensus 512 a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~ 591 (1075)
|.|.......+....+. +-..|..+......+...+++.....-.+.+.|...++.|.+.+-+
T Consensus 380 a~~~~~~~~sss~~~l~-----------------~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~ 442 (741)
T KOG3515|consen 380 ADNLELAHSSSSSFLLP-----------------VLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYK 442 (741)
T ss_pred ccccccccccccceecc-----------------ccCCchhhhhcccceeeccCccccccCcccCCCcccchhheeccee
Confidence 99877544444333322 1112233333444455555655554444446776668999998877
Q ss_pred EecCCc--EEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEE
Q psy16863 592 VEASDK--YHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVS 669 (1075)
Q Consensus 592 i~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~ 669 (1075)
+..... +.+...+ ..+.+.++...|.|.|.|.|.|..|.+.... .+.+...+.... .........++++.
T Consensus 443 ~~~~~g~~~~v~~~~---~~~s~~~v~~~d~g~y~~tatns~gg~~~~~-~~~~~~sp~~~~----~~~~~~~~~~ns~~ 514 (741)
T KOG3515|consen 443 LSQVDGGVVRVGAGA---GLGSGVNVSRSDGGSYGLTATNSPGGAQAYL-LLGVHTSPHNHH----LQDQVEGATGNSVD 514 (741)
T ss_pred cccccCceEEeeccc---cccccceeeeccCCcceeeeccCCCceeeEE-eeccccCCcccc----cccccccCCCCccc
Confidence 654433 3333322 2344667999999999999999999865322 223333221111 11122334566788
Q ss_pred EEEEEecCCC--CeEEEEECCEEcCC-------------CCeEEEeecC--CCceEEEEEEecCceEEEEEEEEEEeccc
Q psy16863 670 FECKVVGFPT--PTLQWFKDNEELKP-------------GDVYQLTGTS--SLGSYCCVAKNVMGKAESSTQLTIEDIRN 732 (1075)
Q Consensus 670 l~C~v~g~p~--p~v~W~k~g~~l~~-------------~~~~~~~~~~--d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~ 732 (1075)
+.|.....|. -.+.|.+.+..... ...+...+.. -++.|.|.+.|..--+.-...|.+...+.
T Consensus 515 ~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~ 594 (741)
T KOG3515|consen 515 GECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALI 594 (741)
T ss_pred ceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEeccccc
Confidence 9999886654 35899998765421 1123333332 35899999988332333334444431100
Q ss_pred cCchhhhhhhccCCCCCeEEeccceeeeecC-CeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEe---eCcEEEEE
Q psy16863 733 HLSEEDKLLLLTNNKAPKFIEGLKSCQATVN-EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE---TLGVCHLK 808 (1075)
Q Consensus 733 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~---~~~~~~L~ 808 (1075)
....+|.... ..+| -.++..|.+.|.|.+.++|-|+......+..+..... ..+.....
T Consensus 595 -----------v~~~tp~~~~------~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~ 657 (741)
T KOG3515|consen 595 -----------VTVRTPNMYT------AQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEW 657 (741)
T ss_pred -----------ccccCCceee------eccCcccccccceecccccceeecccCCCcccCCceEEEeeeecccccccccc
Confidence 0001222211 1111 1788999999999999999999887655554432211 11122333
Q ss_pred EccccCCCCeEEEEEEEeCCceEEEE
Q psy16863 809 IHALEVADQAEWKCIATNDFGQSITS 834 (1075)
Q Consensus 809 I~~~~~~D~G~Y~C~A~N~~G~~~~s 834 (1075)
|-+.-..+.+...|.+.|.+|....+
T Consensus 658 ~~~~~~~~~y~~~c~t~n~lg~~~v~ 683 (741)
T KOG3515|consen 658 ILNHIDGSDYENGCTTQNLLGSDHVS 683 (741)
T ss_pred ccCCcchhhhcceeeecccCCCcccc
Confidence 43444344444999999999987544
No 15
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.79 E-value=3.4e-18 Score=172.20 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=113.7
Q ss_pred cceeeeecCCeEEEEEEEecCC-----------CCeEEEEECCEEe--ec-CCc---EEEEEe--eCcEEEEEEccccCC
Q psy16863 755 LKSCQATVNEEFKFTVQVSISP-----------EPKVSWFRDDQQV--VE-SDN---VKILKE--TLGVCHLKIHALEVA 815 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~p-----------~p~v~W~k~g~~i--~~-~~~---~~~~~~--~~~~~~L~I~~~~~~ 815 (1075)
+....+.+|+++.|.|.+.+.| .+.+.|+|++... .. +.+ ..+... ......|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 4556789999999999998754 4599999998652 11 111 000101 111247999999999
Q ss_pred CCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEc-----cCCCeeEEEECCEEcCCC
Q psy16863 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIG-----VPQPTLKWFKDGRELKAG 890 (1075)
Q Consensus 816 D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g-----~p~p~v~W~k~g~~l~~~ 890 (1075)
|+|.|+|.|+|..|....++.|.|..+ + ....+.+|+.+.|+|.+.+ .|.|+|+|||||++|..+
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~-----~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~ 178 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSG-----T-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT 178 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecC-----C-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC
Confidence 999999999999998888887777422 1 1123568999999999863 467999999999999755
Q ss_pred Ce-------eEEEECCCCceeeEEEEEEEEeCCee
Q psy16863 891 DI-------HKIISGEDGTCCLGIYTCEAHNCMGT 918 (1075)
Q Consensus 891 ~~-------~~i~~~~~~~~d~G~Y~C~a~N~~G~ 918 (1075)
++ ..|.+......|+|.|+|.|+...+.
T Consensus 179 ~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 179 DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 43 34677788889999999999987543
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.71 E-value=1.8e-16 Score=137.89 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=85.2
Q ss_pred CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828 (1075)
Q Consensus 749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~ 828 (1075)
|.|+..++++.+..|+.+.|.|.+.|.|+|.+.|+|||++|..+.++.+.... ..+.|.|.++..+|+|.|+|.|.|.+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~-~~s~L~I~~~~~~D~G~Ytc~a~N~~ 79 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTE-NSSKLTITEGQQEHCGCYTLEVENKL 79 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecC-CeeEEEECCCChhhCEEEEEEEEcCC
Confidence 57788888999999999999999999999999999999999888887776543 35789999999999999999999999
Q ss_pred ceEEEEEEEEEEecC
Q psy16863 829 GQSITSCFLKLNVPK 843 (1075)
Q Consensus 829 G~~~~s~~l~V~~~~ 843 (1075)
|.+.+++.|.|..+|
T Consensus 80 G~~~~~~~l~V~~~P 94 (98)
T cd05762 80 GSRQAQVNLTVVDKP 94 (98)
T ss_pred CceeEEEEEEEecCC
Confidence 999999999998765
No 17
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.70 E-value=7e-16 Score=155.47 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=115.4
Q ss_pred cccceeeccceeEEEEEecCCCc--eEEEEecCCCeeeEEecCCCcccc---CCCe-----EEEe-eCCeEEEEEcccCC
Q psy16863 249 LHDIAVKVGTRARLLVEIRSPTE--IKCQFDLNNTIPFSFRAQGDHPIF---GNRF-----RAIN-RDGRTELNIRRVRR 317 (1075)
Q Consensus 249 ~~~~~v~~g~~~~l~c~~~~~~~--~~c~~~~~~~~~~~w~~~~~~~~~---~~~~-----~~~~-~~~~~~L~I~~~~~ 317 (1075)
+....+.+|+++.|.|.+...+. +. .........+.|.+.+..... +.+. .... ......|.|.+++.
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~-~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFF-DKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred cceEEecCCCCEEEEcccccccccccc-ccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 34567889999999998743110 00 000012345667665532111 1110 0000 11234899999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-----CCCcEEEEEECCEecCC
Q psy16863 318 DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEE 392 (1075)
Q Consensus 318 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~ 392 (1075)
+|+|.|+|.|.|..+.....+.|.|.. ++ .+..+.+|+.+.|.|.+.+ .|.|+|+|||||.+|..
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~----~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~ 177 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDS----GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY 177 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEec----CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC
Confidence 999999999999888877788888752 11 2456788999999999853 35789999999999987
Q ss_pred CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863 393 NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV 428 (1075)
Q Consensus 393 ~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~ 428 (1075)
+.++.+..++. .|.|.+++.+|+|.|+|.|+...
T Consensus 178 ~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 178 TDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeE
Confidence 77766554443 59999999999999999999754
No 18
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.67 E-value=1.1e-15 Score=133.02 Aligned_cols=95 Identities=18% Similarity=0.329 Sum_probs=87.9
Q ss_pred CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429 (1075)
Q Consensus 350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g 429 (1075)
|.|+..+.+..+.+|+.+.|.|.+.|.|++.+.|+|||.+|..+.++.+...+..+.|.|.++..+|+|.|+|.|+|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 56788889999999999999999999999999999999999888888888777778999999999999999999999999
Q ss_pred ceeeEEEEEeecCCC
Q psy16863 430 RSHCSCELSVLVPKA 444 (1075)
Q Consensus 430 ~~~~s~~l~V~~~~~ 444 (1075)
...+++.|.|...|.
T Consensus 81 ~~~~~~~l~V~~~P~ 95 (98)
T cd05762 81 SRQAQVNLTVVDKPD 95 (98)
T ss_pred ceeEEEEEEEecCCC
Confidence 999999999987763
No 19
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.65 E-value=8e-16 Score=125.56 Aligned_cols=74 Identities=24% Similarity=0.421 Sum_probs=65.5
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
+.|+|.+.|.|.|.|+|+|+|++|.. +.++.+...+.+.+.|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999999974 467777665556678999999999999999999999999999988875
No 20
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=1.4e-15 Score=129.73 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~ 827 (1075)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++.++....++.. . ...|.|.+++.+|+|.|+|.|.|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~---~--~~~L~I~~v~~~D~G~Y~C~A~N~ 75 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM---S--GAVLKIFNIQPEDEGTYECEAENI 75 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec---C--CCEEEECcCChhhCEEEEEEEEcC
Confidence 57888899999999999999999999999999999999998866544332 1 237999999999999999999999
Q ss_pred CceEEEEEEEEEE
Q psy16863 828 FGQSITSCFLKLN 840 (1075)
Q Consensus 828 ~G~~~~s~~l~V~ 840 (1075)
+|.+..++.|.|+
T Consensus 76 ~G~~~~~~~l~V~ 88 (88)
T cd05851 76 KGKDKHQARVYVQ 88 (88)
T ss_pred CCceEEEEEEEEC
Confidence 9999999888773
No 21
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.61 E-value=3.5e-15 Score=122.12 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=64.2
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
+.|+|.+.|.|.|.|+|+|++.++.. ..++.+.....+...|.|.+++.+|+|.|+|.|.|.+|++++++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 47999999999999999999999975 356666554445568999999999999999999999999999988875
No 22
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.60 E-value=1.2e-14 Score=125.99 Aligned_cols=90 Identities=24% Similarity=0.494 Sum_probs=83.4
Q ss_pred CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828 (1075)
Q Consensus 749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~ 828 (1075)
|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++|.++..+.++.+.... +.+.|.|.+++.+|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEECC
Confidence 67888889999999999999999999999999999999999999999887655 68899999999999999999999999
Q ss_pred ceEEEEEEEEE
Q psy16863 829 GQSITSCFLKL 839 (1075)
Q Consensus 829 G~~~~s~~l~V 839 (1075)
|..+.++.|.|
T Consensus 80 g~~~~~~~l~V 90 (90)
T PF07679_consen 80 GEATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEEE
T ss_pred CEEEEEEEEEC
Confidence 99988888875
No 23
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.60 E-value=8.1e-15 Score=126.74 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=73.0
Q ss_pred eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~ 836 (1075)
.+.+.+|++++|.|.+.|.|.|++.|+|+|.++..+.++.+.........|.|.+++.+|+|.|+|.|.|.+|.+..++.
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 46788999999999999999999999999999988888877655444678999999999999999999999999887776
Q ss_pred EEE
Q psy16863 837 LKL 839 (1075)
Q Consensus 837 l~V 839 (1075)
|.|
T Consensus 90 v~v 92 (92)
T cd05737 90 VSV 92 (92)
T ss_pred EeC
Confidence 654
No 24
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.59 E-value=1.2e-14 Score=125.78 Aligned_cols=90 Identities=20% Similarity=0.369 Sum_probs=80.1
Q ss_pred CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826 (1075)
Q Consensus 747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N 826 (1075)
.||.|+..+++..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+... ...+.|.|.+++.+|+|.|+|.|+|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST-EYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEc
Confidence 378899889999999999999999999999999999999999988778776543 3357899999999999999999999
Q ss_pred CCceEEEEEEE
Q psy16863 827 DFGQSITSCFL 837 (1075)
Q Consensus 827 ~~G~~~~s~~l 837 (1075)
.+|.+..++.|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99998777665
No 25
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.59 E-value=1.8e-14 Score=122.06 Aligned_cols=82 Identities=23% Similarity=0.435 Sum_probs=70.5
Q ss_pred eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~ 835 (1075)
.+.+..|+.+.|.|.+.|.|.|.++|+|+|+++..+ .++.+.... ..+.|.|.++..+|+|.|+|.|.|.+|.+..++
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYK-DLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcC-CeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 356889999999999999999999999999999764 466665433 357899999999999999999999999998887
Q ss_pred EEEE
Q psy16863 836 FLKL 839 (1075)
Q Consensus 836 ~l~V 839 (1075)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7764
No 26
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.59 E-value=1.3e-14 Score=126.17 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=72.2
Q ss_pred ceeeeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEee----CcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 756 KSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKET----LGVCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
....+.+|+++.|+|.+.| .|+|.+.|+|||.+|.......+...+ .....|.|.++..+|+|.|+|.|+|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3567889999999999999 899999999999999866554443321 12468999999999999999999999999
Q ss_pred EEEEEEEEEEe
Q psy16863 831 SITSCFLKLNV 841 (1075)
Q Consensus 831 ~~~s~~l~V~~ 841 (1075)
+..++.|.|.+
T Consensus 91 ~~~t~~L~V~v 101 (101)
T cd04975 91 KSLTFELYVNV 101 (101)
T ss_pred EEEEEEEEEEC
Confidence 99888888863
No 27
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.57 E-value=1.5e-14 Score=119.08 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=64.4
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
++|+|.+.|.|.|.|+|+|+|..+.. ..++.+.....+..+|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999999974 456666555556678999999999999999999999999999888765
No 28
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.57 E-value=8.6e-15 Score=119.20 Aligned_cols=73 Identities=22% Similarity=0.464 Sum_probs=65.5
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
|+.+.|.|.+.|.|.|+|+|+|++.++..+.++.+.. ++ .|.|.+++.+|+|.|+|.|+|.+|.+.+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~--~g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD--DG--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC--CC--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999999988888877643 22 6999999999999999999999999999988865
No 29
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.57 E-value=2.3e-14 Score=123.48 Aligned_cols=85 Identities=20% Similarity=0.381 Sum_probs=69.9
Q ss_pred cceeeeecCCeEEEEEEEecCCC-CeEEEEE-CCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC-ce
Q psy16863 755 LKSCQATVNEEFKFTVQVSISPE-PKVSWFR-DDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF-GQ 830 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k-~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~-G~ 830 (1075)
+.+..+..|++++|.|.+.|.|. |.++|+| +|.++.. +.++.+...+.....|.|.+++.+|+|.|+|.|+|.+ |.
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~ 86 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE 86 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence 34456889999999999999995 7999998 7877765 4456555444446789999999999999999999997 88
Q ss_pred EEEEEEEEE
Q psy16863 831 SITSCFLKL 839 (1075)
Q Consensus 831 ~~~s~~l~V 839 (1075)
+.+++.|.|
T Consensus 87 ~~~s~~l~v 95 (96)
T cd05865 87 SEATVNVKI 95 (96)
T ss_pred EEEEEEEEE
Confidence 888887765
No 30
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=1.9e-14 Score=118.63 Aligned_cols=74 Identities=22% Similarity=0.393 Sum_probs=64.8
Q ss_pred cCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 762 ~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
+|+.+.|.|.+.|.|.|.|+|+|+|.++....++.+.. . ..|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~--~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS--S--GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc--C--CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58999999999999999999999999987766655432 2 37999999999999999999999999998888765
No 31
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.54 E-value=6.7e-14 Score=119.22 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=68.9
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEee---CcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKET---LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
|+.++|.|.+.|.|+|.++|+|++..+..+ .++.+.... .....|.|.++..+|+|.|+|.|.|.+|....++.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999988654 466554322 1236899999999999999999999999999999999
Q ss_pred EEecC
Q psy16863 839 LNVPK 843 (1075)
Q Consensus 839 V~~~~ 843 (1075)
|..+|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 98764
No 32
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.54 E-value=9e-14 Score=120.57 Aligned_cols=90 Identities=30% Similarity=0.592 Sum_probs=84.7
Q ss_pred CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429 (1075)
Q Consensus 350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g 429 (1075)
|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.++.+...+..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 67888899999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ceeeEEEEEe
Q psy16863 430 RSHCSCELSV 439 (1075)
Q Consensus 430 ~~~~s~~l~V 439 (1075)
....++.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9888888765
No 33
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.54 E-value=2.7e-14 Score=112.89 Aligned_cols=66 Identities=20% Similarity=0.340 Sum_probs=57.3
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
++|.|.+.|.|.|.++|||||++|.... ....|.|.++..+|+|.|+|.|+|.+|....+..+.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~---------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH---------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC---------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4799999999999999999999996321 23489999999999999999999999988888777764
No 34
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.54 E-value=3.3e-14 Score=120.66 Aligned_cols=84 Identities=20% Similarity=0.527 Sum_probs=72.9
Q ss_pred EEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
|+..+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|.++....++.+. .+ .|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---~~--~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---AG--DLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---CC--EEEEeeCCHHHCEEEEEEEECCCCe
Confidence 445567788999999999999999999999999999999877666542 22 6999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy16863 831 SITSCFLKL 839 (1075)
Q Consensus 831 ~~~s~~l~V 839 (1075)
..+++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 988888765
No 35
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.54 E-value=4.6e-14 Score=123.01 Aligned_cols=85 Identities=24% Similarity=0.344 Sum_probs=71.0
Q ss_pred eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEe-----eCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE-----TLGVCHLKIHALEVADQAEWKCIATNDFGQS 831 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 831 (1075)
...+..|+.+.|.|.+.|.|+|.++|+|||++|..+.+..+... ....+.|.|.+++.+|+|.|+|.|.|..|.+
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 45688899999999999999999999999999987654433211 1123589999999999999999999999999
Q ss_pred EEEEEEEEEe
Q psy16863 832 ITSCFLKLNV 841 (1075)
Q Consensus 832 ~~s~~l~V~~ 841 (1075)
..++.|.|++
T Consensus 92 ~~t~~l~V~v 101 (101)
T cd05859 92 SYTFALQIQV 101 (101)
T ss_pred EEEEEEEEEC
Confidence 9998888863
No 36
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.53 E-value=9.6e-14 Score=120.12 Aligned_cols=90 Identities=17% Similarity=0.329 Sum_probs=81.8
Q ss_pred CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~ 427 (1075)
.||.|+..+.+..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|+|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 37888888999999999999999999999999999999999998888888777777788999999999999999999999
Q ss_pred CCceeeEEEE
Q psy16863 428 VGRSHCSCEL 437 (1075)
Q Consensus 428 ~g~~~~s~~l 437 (1075)
.|....++.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9998877665
No 37
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.53 E-value=5.6e-14 Score=114.53 Aligned_cols=71 Identities=34% Similarity=0.608 Sum_probs=62.2
Q ss_pred eEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 765 EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 765 ~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
.+.|.|.+.|.|.|.++|+|+|.++..+.++.+.... .|.|.+++.+|+|.|+|.|.|.+|++.+++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 3789999999999999999999999877777664432 4888899999999999999999999999888865
No 38
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.53 E-value=1.1e-13 Score=116.92 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=65.3
Q ss_pred CeEEEEEEEecCCCC--eEEEEECCEEeecC---CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 764 EEFKFTVQVSISPEP--KVSWFRDDQQVVES---DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 764 ~~~~l~C~v~g~p~p--~v~W~k~g~~i~~~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
++++|.|.+.|.|.| .++|+|||.+|... .++.+.........|+|.+++.+|+|.|+|.|.|.+|++.+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999987 68999999998643 2443322222345899999999999999999999999999999999
Q ss_pred EEecC
Q psy16863 839 LNVPK 843 (1075)
Q Consensus 839 V~~~~ 843 (1075)
|..||
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98754
No 39
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=7.9e-14 Score=118.91 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=76.5
Q ss_pred CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV 428 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~ 428 (1075)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....++. ..+. .|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~~~--~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSGA--VLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cCCC--EEEECcCChhhCEEEEEEEEcCC
Confidence 5788888899999999999999999999999999999998887654433 2333 58999999999999999999999
Q ss_pred CceeeEEEEEee
Q psy16863 429 GRSHCSCELSVL 440 (1075)
Q Consensus 429 g~~~~s~~l~V~ 440 (1075)
|....++.|.|.
T Consensus 77 G~~~~~~~l~V~ 88 (88)
T cd05851 77 GKDKHQARVYVQ 88 (88)
T ss_pred CceEEEEEEEEC
Confidence 999988888763
No 40
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.52 E-value=1.2e-13 Score=118.85 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=71.4
Q ss_pred eccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863 753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832 (1075)
Q Consensus 753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 832 (1075)
.++.+..+..|+.+.|.|.+.|.|.|.++|+|+|..+......... .......|.|.++..+|.|.|+|.|.|.+|.+.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 3445666889999999999999999999999999988765543322 223456899999999999999999999999998
Q ss_pred EEEEEEE
Q psy16863 833 TSCFLKL 839 (1075)
Q Consensus 833 ~s~~l~V 839 (1075)
+++.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 8888764
No 41
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.52 E-value=8.1e-14 Score=115.13 Aligned_cols=75 Identities=16% Similarity=0.347 Sum_probs=62.2
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
|+.+.|.|.+.|.|.|+|+|+|+|+++...........+. ..|.|.+++.+|+|.|+|.|+|.+|.+.+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6789999999999999999999999986443211111222 26899999999999999999999999999998887
No 42
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.52 E-value=1.1e-13 Score=114.85 Aligned_cols=75 Identities=19% Similarity=0.343 Sum_probs=62.2
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
|+.+.|.|.+.|.|.|+++|+|+|.++............. ..|.|.+++.+|+|.|+|.|.|.+|...+++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6889999999999999999999999987543211111122 26999999999999999999999999998888876
No 43
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.51 E-value=1.4e-13 Score=118.58 Aligned_cols=83 Identities=19% Similarity=0.362 Sum_probs=71.5
Q ss_pred eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~ 836 (1075)
.+.+.+|+.+.|.|.+.|.|.|.+.|||+|..+..+.++.+.........|.|.+++.+|+|.|+|.|.|.+|.+..++.
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 45688999999999999999999999999999987777766544444568999999999999999999999999987776
Q ss_pred EEE
Q psy16863 837 LKL 839 (1075)
Q Consensus 837 l~V 839 (1075)
|.|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 654
No 44
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=1.4e-13 Score=120.64 Aligned_cols=90 Identities=22% Similarity=0.470 Sum_probs=72.7
Q ss_pred CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE--CCEEeec-----CCcEEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQQVVE-----SDNVKILKETLGVCHLKIHALEVADQAEW 820 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--~g~~i~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 820 (1075)
+|.+.. +++..+.+|+.++|.|.+.|.|.|.|+|+| +|..+.. +.++.+.. ..+...|+|.+++.+|+|.|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-~~~~~~L~I~~v~~~D~G~Y 79 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-QHGESSLHIKDVKLSDSGRY 79 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee-cCCeeEEEEeeCCcCCCEEE
Confidence 566654 778899999999999999999999999999 4555532 23555532 23456899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy16863 821 KCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 821 ~C~A~N~~G~~~~s~~l~V 839 (1075)
+|.|.|.+|.+..++.|.|
T Consensus 80 ~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 80 DCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEeccCCcceeEEEEeC
Confidence 9999999999988888764
No 45
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.51 E-value=2.5e-13 Score=114.99 Aligned_cols=82 Identities=26% Similarity=0.354 Sum_probs=72.7
Q ss_pred ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 436 (1075)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|+|.++... .++.+...+....|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 467889999999999999999999999999999764 4677777667778999999999999999999999999888777
Q ss_pred EEe
Q psy16863 437 LSV 439 (1075)
Q Consensus 437 l~V 439 (1075)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 764
No 46
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.51 E-value=1.4e-13 Score=113.74 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=64.8
Q ss_pred eEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 765 EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 765 ~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
.+.|.|.+.|.|.|.++|+|+|.++..+.++.+... .....|.|.++..+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999999999999999999977777776543 34678999999999999999999999999988877764
No 47
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.50 E-value=1.5e-13 Score=119.48 Aligned_cols=85 Identities=25% Similarity=0.355 Sum_probs=72.2
Q ss_pred CceeeccCCeEEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEEcC-----CEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 357 HDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDG-----NFYFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~g-----~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
..+.+.+|++++|.|.+.| .|+|.+.|+|||.+|.......+...+ ....|.|.++..+|+|.|+|.|+|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 5678899999999999999 899999999999999865554433332 2467999999999999999999999999
Q ss_pred eeeEEEEEeec
Q psy16863 431 SHCSCELSVLV 441 (1075)
Q Consensus 431 ~~~s~~l~V~~ 441 (1075)
.+.++.|.|.+
T Consensus 91 ~~~t~~L~V~v 101 (101)
T cd04975 91 KSLTFELYVNV 101 (101)
T ss_pred EEEEEEEEEEC
Confidence 99888888764
No 48
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=1.3e-13 Score=118.29 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=73.6
Q ss_pred CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~ 827 (1075)
||.+...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....... .. ...|.|.+++.+|+|.|+|.|.|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---~~--~~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS---MS--GAVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE---Ee--CCEEEECCCCcccCEEEEEEEEEC
Confidence 4556666778889999999999999999999999999988765544332 12 247999999999999999999999
Q ss_pred CceEEEEEEEEEE
Q psy16863 828 FGQSITSCFLKLN 840 (1075)
Q Consensus 828 ~G~~~~s~~l~V~ 840 (1075)
.|....++.|.|+
T Consensus 76 ~G~~~~~~~l~V~ 88 (88)
T cd04968 76 KGKDTHQGRIYVQ 88 (88)
T ss_pred CCcEEEEEEEEEC
Confidence 9999888888763
No 49
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.50 E-value=2.3e-13 Score=119.07 Aligned_cols=91 Identities=21% Similarity=0.427 Sum_probs=71.5
Q ss_pred CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC-----cEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD-----NVKILKETLGVCHLKIHALEVADQAEWKC 822 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~-----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 822 (1075)
.|.|........+..|+.++|.|.+.|.|.|.++|+|+++.+.... ++.+.. ......|.|.+++.+|+|.|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~-~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS-HARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc-CccEEEEEEecCccCcCEEEEE
Confidence 4566655555555568999999999999999999999998775432 233322 2234689999999999999999
Q ss_pred EEEeCCceEEEEEEEEE
Q psy16863 823 IATNDFGQSITSCFLKL 839 (1075)
Q Consensus 823 ~A~N~~G~~~~s~~l~V 839 (1075)
.|.|.+|.+..++.|.|
T Consensus 81 ~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 81 TASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEecCCCCeeEEEEEEC
Confidence 99999999988888765
No 50
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.50 E-value=1.8e-13 Score=119.58 Aligned_cols=83 Identities=20% Similarity=0.404 Sum_probs=70.4
Q ss_pred ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s 834 (1075)
.+..+..|+++.|.|.+.|.|.|.+.|+|+|..+... .++.+. . ....|.|.+++.+|+|.|+|.|.|.+|.+..+
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--E-DGSEMTILDVDKLDEAEYTCIAENKAGEQEAE 87 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--C-CCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence 3457889999999999999999999999999998765 344332 2 23479999999999999999999999999999
Q ss_pred EEEEEEe
Q psy16863 835 CFLKLNV 841 (1075)
Q Consensus 835 ~~l~V~~ 841 (1075)
+.|.|.+
T Consensus 88 ~~L~V~~ 94 (95)
T cd05730 88 IHLKVFA 94 (95)
T ss_pred EEEEEEe
Confidence 9988864
No 51
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.50 E-value=1.2e-13 Score=109.09 Aligned_cols=65 Identities=25% Similarity=0.402 Sum_probs=56.2
Q ss_pred EEEEEEEEccCCCeeEEEECCEEcCC-CCeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863 864 VNLECKVIGVPQPTLKWFKDGRELKA-GDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928 (1075)
Q Consensus 864 ~~L~C~v~g~p~p~v~W~k~g~~l~~-~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 928 (1075)
++|.|.+.|.|.|.++|||||++|.. .....|.+.....+|+|.|+|.|+|.+|..+.+.+|.++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999999999999999999963 334577888888899999999999999988888777654
No 52
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.49 E-value=2.3e-13 Score=116.22 Aligned_cols=81 Identities=15% Similarity=0.387 Sum_probs=67.4
Q ss_pred eeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
.+..|+.+.|.|.+.|.|.|.++|+|+|.++..+.+............|.|.++..+|+|.|+|.|.|.+|.+..++.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 47789999999999999999999999999997665432211122345799999999999999999999999998888776
Q ss_pred E
Q psy16863 839 L 839 (1075)
Q Consensus 839 V 839 (1075)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 5
No 53
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.49 E-value=1.4e-13 Score=112.49 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=58.8
Q ss_pred EEEEEEecCCCCeEEEEECCEEeecCCcEEEE--E--eeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKIL--K--ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 767 ~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~--~--~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
.|.|.+.|.|.|+|+|||||++|..+.++... . .......|.|.++..+|+|.|+|+|+|.+|++..++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 47899999999999999999999877654321 1 112346899999999999999999999999987776554
No 54
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.49 E-value=3.7e-13 Score=116.33 Aligned_cols=83 Identities=20% Similarity=0.404 Sum_probs=72.6
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~ 435 (1075)
..+.+.+|++++|.|.+.|.|.|.+.|+|+|.++....++.+... +....|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 446889999999999999999999999999999988777776644 5566899999999999999999999999988777
Q ss_pred EEEe
Q psy16863 436 ELSV 439 (1075)
Q Consensus 436 ~l~V 439 (1075)
.|.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 6654
No 55
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.48 E-value=1.6e-13 Score=113.93 Aligned_cols=80 Identities=14% Similarity=0.226 Sum_probs=64.8
Q ss_pred CeEEEEEEEecCC--CCeEEEEECCEEeec---CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 764 EEFKFTVQVSISP--EPKVSWFRDDQQVVE---SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 764 ~~~~l~C~v~g~p--~p~v~W~k~g~~i~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
+++.|.|.+.+.| ++.|.|+|||++|.. +.+|.+.........|.|.+++..|+|.|+|.|.|.+++..+++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999998744 789999999999962 23454432111233799999999999999999999999999999999
Q ss_pred EEecC
Q psy16863 839 LNVPK 843 (1075)
Q Consensus 839 V~~~~ 843 (1075)
|.+||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99875
No 56
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.48 E-value=1.2e-13 Score=110.92 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=58.6
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
+.|.|.+.|.|.|.++|+|||++|....++. . ...|.|.++..+|+|.|+|.|.|.+|..+.+.++.|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~----~--~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK----R--GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc----c--CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 3689999999999999999999997654321 1 2379999999999999999999999988887777765
No 57
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=4.9e-13 Score=113.93 Aligned_cols=85 Identities=26% Similarity=0.424 Sum_probs=69.5
Q ss_pred eccceeeeecCCeEEEEEEEecCCCCeEEEEE-CCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863 753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFR-DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS 831 (1075)
Q Consensus 753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k-~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 831 (1075)
..+.+..+.+|+++.|.|.+.|.|. .++|+| +|.++..+.++.+... .....|.|.++..+|+|.|+|.|+|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~-g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeC-CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 3456677999999999999999998 999998 5788877778776543 335689999999999999999999999986
Q ss_pred E-EEEEEEE
Q psy16863 832 I-TSCFLKL 839 (1075)
Q Consensus 832 ~-~s~~l~V 839 (1075)
. .+..|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 4 3555443
No 58
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.47 E-value=3.9e-13 Score=111.81 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=59.3
Q ss_pred EEEEEEecCCCCeEEEEECCEEeecCCcEEEEEee------CcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET------LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 767 ~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
.|.|.+.|.|.|+|+|+|||++|..+.++...... .....|+|.+++.+|+|.|+|.|+|.+|.+.+++.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 47899999999999999999999877654432221 2355799999999999999999999999987776654
No 59
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.47 E-value=3.7e-13 Score=118.07 Aligned_cols=90 Identities=22% Similarity=0.433 Sum_probs=73.1
Q ss_pred CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-----CcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-----DNVKILKETLGVCHLKIHALEVADQAEWKC 822 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 822 (1075)
+|.|. .+.+..+.+|+++.|.|.+.|.|.|.++|+|++..+... .++.+. .......|.|.+++.+|+|.|+|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C 79 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR-GHARVSSLTLKDVQLTDAGRYDC 79 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe-CCccEEEEEECcCCcCcCEEeEE
Confidence 45664 466788999999999999999999999999999776543 233332 22345789999999999999999
Q ss_pred EEEeCCceEEEEEEEEE
Q psy16863 823 IATNDFGQSITSCFLKL 839 (1075)
Q Consensus 823 ~A~N~~G~~~~s~~l~V 839 (1075)
.|.|.+|.+..++.|.|
T Consensus 80 ~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 80 EASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEeCCCCcEEEEEEeC
Confidence 99999999988887764
No 60
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=2.2e-13 Score=112.07 Aligned_cols=73 Identities=22% Similarity=0.490 Sum_probs=64.9
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
|+.+.|.|.+.|.|.|.++|+|++..+..+.++.+... + .|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~--~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD--G--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC--C--eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999999999999999999999988777775432 2 6999999999999999999999999988888765
No 61
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.47 E-value=3.9e-13 Score=112.03 Aligned_cols=77 Identities=27% Similarity=0.324 Sum_probs=66.7
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
|+++.|.|.+.|.|.|.++|+|++..+....++.+... .+...|.|.+++.+|+|.|+|.|.|..|...+.+.+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSE-GGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEEC-CCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 68899999999999999999999999887777766543 346789999999999999999999999998877666554
No 62
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.46 E-value=4.5e-13 Score=109.40 Aligned_cols=73 Identities=25% Similarity=0.350 Sum_probs=63.0
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
+.|.|.+.|.|.|.|.|+|||..|.. +.++.+..+ +...+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999999974 456666544 33457999999999999999999999999999888875
No 63
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.45 E-value=4.4e-13 Score=111.19 Aligned_cols=73 Identities=22% Similarity=0.444 Sum_probs=59.5
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCC-cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESD-NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 841 (1075)
++|.|.+.|.|.|.|+|+|+|.++..+. ++.+. .. ...|.|.+++.+|+|.|+|.|.|.+|...++..+.|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS-SK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe-CC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 4799999999999999999999987654 33332 22 24799999999999999999999999987666666654
No 64
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.45 E-value=2.7e-13 Score=110.20 Aligned_cols=70 Identities=19% Similarity=0.386 Sum_probs=60.1
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
++|.|.+.|.|.|.++|+|||+++..+.++.. ....|.|.+++.+|+|.|+|.|.|.+|....+..+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK-----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc-----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 46999999999999999999999987654332 13479999999999999999999999998888877765
No 65
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.45 E-value=4.7e-13 Score=111.56 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=63.2
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
|+.+.|.|.+.|.|.|.|+|+++|.++............ ...|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD--GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEcc--CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 688999999999999999999999998765433111122 247999999999999999999999999999888876
No 66
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.45 E-value=7.4e-13 Score=117.65 Aligned_cols=92 Identities=15% Similarity=0.372 Sum_probs=69.9
Q ss_pred CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC----CcEEEEEeeCcEEEEEE--ccccCCCCeEEE
Q psy16863 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES----DNVKILKETLGVCHLKI--HALEVADQAEWK 821 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~----~~~~~~~~~~~~~~L~I--~~~~~~D~G~Y~ 821 (1075)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+... ....+.........+.| ..++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 578888888999999999999999999999999999999998762 22222222222233333 334799999999
Q ss_pred EEEEeCCce-EEEEEEEEE
Q psy16863 822 CIATNDFGQ-SITSCFLKL 839 (1075)
Q Consensus 822 C~A~N~~G~-~~~s~~l~V 839 (1075)
|.|.|.+|. .+.++.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999999 445666665
No 67
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.45 E-value=8.8e-13 Score=113.98 Aligned_cols=82 Identities=20% Similarity=0.425 Sum_probs=65.1
Q ss_pred CeEEeccceeeee---cCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEcccc-CCCCeEEEEEE
Q psy16863 749 PKFIEGLKSCQAT---VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE-VADQAEWKCIA 824 (1075)
Q Consensus 749 p~~~~~~~~~~~~---~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~A 824 (1075)
|.|+..+.++.+. .|+.+.|.|.+.|.|.|+|+|+|||.+|.....+.+...+ + .|.|.++. .+|+|.|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~-g--~L~i~~~~~~~D~G~Y~C~A 78 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID-G--NLIISNPSEVKDSGRYQCLA 78 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC-C--eEEEccCCccCcCEEEEEEE
Confidence 6677777776554 4689999999999999999999999999755443333222 3 68898875 69999999999
Q ss_pred EeCCceEEE
Q psy16863 825 TNDFGQSIT 833 (1075)
Q Consensus 825 ~N~~G~~~~ 833 (1075)
.|.+|...+
T Consensus 79 ~N~~G~~~S 87 (94)
T cd05848 79 TNSIGSILS 87 (94)
T ss_pred EcCCCeEEe
Confidence 999998754
No 68
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.45 E-value=3.6e-13 Score=109.69 Aligned_cols=73 Identities=26% Similarity=0.483 Sum_probs=65.9
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
|+.+.|.|.+.|.|.|.|+|+|++..+..+.++.+..++ .|.|.+++.+|+|.|+|.|+|..|....++.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 788999999999999999999999988888887776555 4899999999999999999999999998888865
No 69
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.45 E-value=1.2e-12 Score=112.76 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=72.5
Q ss_pred eecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863 354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC 433 (1075)
Q Consensus 354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~ 433 (1075)
.++.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+................|.|.++..+|.|.|+|.|.|..|....
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 34456679999999999999999999999999999887655544444455668999999999999999999999999988
Q ss_pred EEEEEe
Q psy16863 434 SCELSV 439 (1075)
Q Consensus 434 s~~l~V 439 (1075)
++.|+|
T Consensus 85 ~~~L~v 90 (90)
T cd04972 85 SVQVTV 90 (90)
T ss_pred EEEEeC
Confidence 887764
No 70
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.45 E-value=2.3e-13 Score=110.29 Aligned_cols=68 Identities=34% Similarity=0.557 Sum_probs=59.9
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l 837 (1075)
+.|.|.+.|.|.|.++|+|+|.++..+.++.+... ..|.|.+++.+|+|.|+|.|.|.+|.+..++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE----GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC----CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999999999987777765432 379999999999999999999999999887766
No 71
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.44 E-value=7.3e-13 Score=112.72 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=64.5
Q ss_pred CeEEEEEEEecCCCC--eEEEEECCEEeecCC---cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 764 EEFKFTVQVSISPEP--KVSWFRDDQQVVESD---NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 764 ~~~~l~C~v~g~p~p--~v~W~k~g~~i~~~~---~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
+++.|.|.+.|.|.| .++|+|+|.+|.... ++...........|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999987 679999999986432 232222222345899999999999999999999999999999999
Q ss_pred EEecC
Q psy16863 839 LNVPK 843 (1075)
Q Consensus 839 V~~~~ 843 (1075)
|..||
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98764
No 72
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.44 E-value=1.2e-12 Score=116.43 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=73.7
Q ss_pred CCCeEEeccceee-e---ecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeC---cEEEEEEcccc-CCCC
Q psy16863 747 KAPKFIEGLKSCQ-A---TVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETL---GVCHLKIHALE-VADQ 817 (1075)
Q Consensus 747 ~~p~~~~~~~~~~-~---~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~---~~~~L~I~~~~-~~D~ 817 (1075)
.+|.|..++.... + ..|..+.|.|.+.|.|.|.++|+|||..|... .++.+..... ....|+|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 4666665544222 2 24678999999999999999999999998643 3554332211 13579999997 6999
Q ss_pred eEEEEEEEeCCceEEEEEEEEEEecC
Q psy16863 818 AEWKCIATNDFGQSITSCFLKLNVPK 843 (1075)
Q Consensus 818 G~Y~C~A~N~~G~~~~s~~l~V~~~~ 843 (1075)
|.|+|.|.|.+|.+..++.|.|..+|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999989988887653
No 73
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=4.7e-13 Score=110.29 Aligned_cols=74 Identities=26% Similarity=0.448 Sum_probs=64.9
Q ss_pred cCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 363 ~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
+|+.+.|.|.+.|.|.|.|+|+|+|..+....++.+...+ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6899999999999999999999999998776665554443 5899999999999999999999999988888765
No 74
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.44 E-value=8.3e-13 Score=108.08 Aligned_cols=73 Identities=21% Similarity=0.401 Sum_probs=62.9
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEcC-CEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDG-NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~g-~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
++|.|.+.|.|.|.|.|+|+|..+.. ..++.+..++ ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999999875 3566665544 3447999999999999999999999999999888875
No 75
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.43 E-value=1.8e-12 Score=110.53 Aligned_cols=85 Identities=20% Similarity=0.378 Sum_probs=72.3
Q ss_pred eecCceeeccCCeEEEEEEEecCCCcEEEEEE-CCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-
Q psy16863 354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR-NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS- 431 (1075)
Q Consensus 354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~- 431 (1075)
..+.+..+.+|+++.|.|.+.|.|. .++|++ +|..+..+.++.+..++....|.|.++..+|+|.|+|.|+|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 3557788999999999999999987 999998 5778877788888778877889999999999999999999999986
Q ss_pred eeEEEEEe
Q psy16863 432 HCSCELSV 439 (1075)
Q Consensus 432 ~~s~~l~V 439 (1075)
..+..|.|
T Consensus 84 ~~~i~l~~ 91 (92)
T cd05866 84 EATVVLEI 91 (92)
T ss_pred EEEEEEEE
Confidence 44555544
No 76
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.43 E-value=7e-13 Score=109.55 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=57.6
Q ss_pred CCeEEEEEEEEccCCCeeEEEECCEEcCCCC--------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGD--------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928 (1075)
Q Consensus 861 g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~--------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 928 (1075)
|+.++|.|.+.|.|.|+|+|+|||+++.... ...|.+......|+|.|+|.|+|.+|.+.+++.|.|+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 6789999999999999999999999986321 1245556667789999999999999999999999874
No 77
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.42 E-value=1e-12 Score=114.59 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=70.9
Q ss_pred ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc------CCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD------GNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~------g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
...+..|+.+.|.|.+.|.|+|.+.|+|||.+|..+.+...... ...+.|.|.++..+|+|.|+|.|+|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 56788899999999999999999999999999987655433221 123579999999999999999999999999
Q ss_pred eeEEEEEeec
Q psy16863 432 HCSCELSVLV 441 (1075)
Q Consensus 432 ~~s~~l~V~~ 441 (1075)
+.++.|.|.+
T Consensus 92 ~~t~~l~V~v 101 (101)
T cd05859 92 SYTFALQIQV 101 (101)
T ss_pred EEEEEEEEEC
Confidence 9888888763
No 78
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.42 E-value=1e-12 Score=108.99 Aligned_cols=68 Identities=26% Similarity=0.535 Sum_probs=58.8
Q ss_pred CCeEEEEEEEEccCCCeeEEEECCEEcCCCC--------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGD--------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928 (1075)
Q Consensus 861 g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~--------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 928 (1075)
|++++|.|.+.|.|.|+|+|+|||.++.... ...|.+......|+|.|+|.|.|.+|...+++.|.|+
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 6789999999999999999999999986532 1346667777899999999999999999999998873
No 79
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.42 E-value=2e-12 Score=111.47 Aligned_cols=85 Identities=18% Similarity=0.360 Sum_probs=69.4
Q ss_pred ecCceeeccCCeEEEEEEEecCC-CcEEEEEE-CCEecCC-CCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCC-C
Q psy16863 355 RLHDIAVKVGTRARLLVEIRSPT-EIKIHWYR-NDRKLEE-NKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAV-G 429 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k-~g~~l~~-~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~-g 429 (1075)
.+....+.+|++++|.|.+.|.| +|.|+|++ ||..+.. +.++.+.. ++...+|.|.+++.+|+|.|+|.|+|.+ |
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 34566789999999999999998 47999998 7877655 44555443 3445789999999999999999999997 8
Q ss_pred ceeeEEEEEe
Q psy16863 430 RSHCSCELSV 439 (1075)
Q Consensus 430 ~~~~s~~l~V 439 (1075)
...+++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 8888888776
No 80
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.42 E-value=1.1e-12 Score=111.24 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=72.7
Q ss_pred eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863 352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
|+..|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++... +. .|.|.++..+|+|.|+|.|.|..|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 455677889999999999999999999999999999999876665542 22 48899999999999999999999998
Q ss_pred eeEEEEEe
Q psy16863 432 HCSCELSV 439 (1075)
Q Consensus 432 ~~s~~l~V 439 (1075)
..++.|.|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 88887765
No 81
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.42 E-value=1.9e-12 Score=106.91 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=66.7
Q ss_pred eEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 366 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999998778888877777788999999999999999999999999888877764
No 82
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.42 E-value=1.2e-12 Score=105.42 Aligned_cols=68 Identities=18% Similarity=0.444 Sum_probs=57.0
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l 837 (1075)
|+++.|+|.+.|.|.|.|+|+|+|.++....++.. +...|.|.+++ |+|.|+|.|.|.+|...+++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999999866554332 23479999874 8999999999999998887765
No 83
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=2.1e-12 Score=113.18 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=73.3
Q ss_pred CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEecCC-----CCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRKLEE-----NKIYRTQHDGNFYFIDLSSVSLFDSGRWT 421 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~l~~-----~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~ 421 (1075)
+|.+. .+.+..+.+|+.++|.|.+.|.|.|.|.|+| +|..+.. +.++.+........|.|.+++.+|+|.|+
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 56665 4678999999999999999999999999999 4444432 24555554445567999999999999999
Q ss_pred EEEEeCCCceeeEEEEEe
Q psy16863 422 CLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 422 C~a~n~~g~~~~s~~l~V 439 (1075)
|.|.|..|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999888877764
No 84
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.41 E-value=5.7e-13 Score=108.59 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=58.3
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
+.|+|.+.|.|.|.+.|+|++.++..+. .... . ....|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~-~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL-N--NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE-c--CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4699999999999999999998876543 2221 1 2348999999999999999999999999988888776
No 85
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.41 E-value=2e-12 Score=111.07 Aligned_cols=81 Identities=19% Similarity=0.349 Sum_probs=63.9
Q ss_pred CCeEEeccceeeeecC---CeEEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEcccc-CCCCeEEEE
Q psy16863 748 APKFIEGLKSCQATVN---EEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALE-VADQAEWKC 822 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g---~~~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C 822 (1075)
+|.|...+.++.+.++ ..+.|.|.+.|.|.|+|+|+|++.++.. ..++.+. ++ .|.|.++. .+|+|.|+|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~---~g--~L~I~~~~~~~D~G~Y~C 75 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV---GG--NLVINNPDKYKDAGRYVC 75 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE---CC--EEEECcCCcCCCCEEEEE
Confidence 3667777776655544 4899999999999999999999998864 3444332 23 69999985 699999999
Q ss_pred EEEeCCceEEE
Q psy16863 823 IATNDFGQSIT 833 (1075)
Q Consensus 823 ~A~N~~G~~~~ 833 (1075)
.|+|.+|...+
T Consensus 76 ~A~N~~G~~~s 86 (93)
T cd05849 76 IVSNIYGKVRS 86 (93)
T ss_pred EEEeCcceEEE
Confidence 99999998755
No 86
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.41 E-value=2.8e-12 Score=110.95 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=63.6
Q ss_pred CeEEeccceeeeecC---CeEEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEcccc-CCCCeEEEE
Q psy16863 749 PKFIEGLKSCQATVN---EEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALE-VADQAEWKC 822 (1075)
Q Consensus 749 p~~~~~~~~~~~~~g---~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C 822 (1075)
|.|...+.++.+.+| +.+.|.|.+.|.|.|.|+|+|||.++.... ++.+. .+ .|.|.++. ..|+|.|+|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~g--~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV---AG--NLVINNPQKARDAGSYQC 76 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE---CC--eEEEccCCccCcCEEEEE
Confidence 567777777766555 589999999999999999999999986443 33332 22 68898865 699999999
Q ss_pred EEEeCCceEEE
Q psy16863 823 IATNDFGQSIT 833 (1075)
Q Consensus 823 ~A~N~~G~~~~ 833 (1075)
.|+|.+|...+
T Consensus 77 ~A~N~~G~~~s 87 (94)
T cd05850 77 LAINRCGTVVS 87 (94)
T ss_pred EEEcCcCcEEE
Confidence 99999998765
No 87
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.41 E-value=2.5e-12 Score=112.45 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=73.7
Q ss_pred CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-----CcEEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-----KIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-----~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~ 423 (1075)
.|.|...+....+..|+.++|.|.+.|.|.|.|+|+|++..+... .++.+..+.....|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 466665555556667899999999999999999999999877543 234444455557899999999999999999
Q ss_pred EEeCCCceeeEEEEEe
Q psy16863 424 AENAVGRSHCSCELSV 439 (1075)
Q Consensus 424 a~n~~g~~~~s~~l~V 439 (1075)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999988887765
No 88
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.40 E-value=1.2e-12 Score=112.66 Aligned_cols=78 Identities=18% Similarity=0.358 Sum_probs=64.4
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEee--------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVV--------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~--------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s 834 (1075)
|+.+.|.|.+.|.|.|.+.|+|+|..+. ...++.+.. . ..|+|.+++.+|+|.|+|.|.|.+|....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~--~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ--T--GDLTITNVQRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC--C--CeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence 6889999999999999999999987531 234454422 2 269999999999999999999999999999
Q ss_pred EEEEEEecCC
Q psy16863 835 CFLKLNVPKH 844 (1075)
Q Consensus 835 ~~l~V~~~~~ 844 (1075)
+.|.|.....
T Consensus 77 ~~l~V~~~~~ 86 (90)
T cd05726 77 AYLEVTDVIA 86 (90)
T ss_pred EEEEEeeccc
Confidence 9999986543
No 89
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=1.4e-12 Score=104.76 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=55.1
Q ss_pred EEEEEEEEccCCCeeEEEECCEEcCCCCe----eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863 864 VNLECKVIGVPQPTLKWFKDGRELKAGDI----HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928 (1075)
Q Consensus 864 ~~L~C~v~g~p~p~v~W~k~g~~l~~~~~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 928 (1075)
+.|.|.+.|.|.|.++|||||.+|..+.. ..|.+......|+|.|+|.|.|.+|.++.+.++.++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 47999999999999999999999976432 357777888899999999999999988877776653
No 90
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.40 E-value=2.5e-12 Score=110.77 Aligned_cols=83 Identities=25% Similarity=0.413 Sum_probs=66.7
Q ss_pred cceeeeecCCeEEEEEEEecCCCCeEEEEE-CCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce-EE
Q psy16863 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFR-DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ-SI 832 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k-~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~ 832 (1075)
+.+..+..|+++.|.|.+.|.|. .++|++ +|..+....++.+.........|+|.+++.+|+|.|+|.|.|.+|. +.
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~ 85 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE 85 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence 34567889999999999999975 999998 6777776666666555555679999999999999999999999765 45
Q ss_pred EEEEEE
Q psy16863 833 TSCFLK 838 (1075)
Q Consensus 833 ~s~~l~ 838 (1075)
.++.|.
T Consensus 86 ~sv~l~ 91 (92)
T cd04977 86 ATVNLK 91 (92)
T ss_pred eEEEEE
Confidence 555554
No 91
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.40 E-value=2.5e-12 Score=112.32 Aligned_cols=83 Identities=22% Similarity=0.441 Sum_probs=70.7
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~ 435 (1075)
.+..+..|+.+.|.|.+.|.|.+.|.|+|+|..+... .++....++ ..|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDG--SEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCC--CEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 4557899999999999999999999999999998765 444443333 3599999999999999999999999999888
Q ss_pred EEEeec
Q psy16863 436 ELSVLV 441 (1075)
Q Consensus 436 ~l~V~~ 441 (1075)
.|.|.+
T Consensus 89 ~L~V~~ 94 (95)
T cd05730 89 HLKVFA 94 (95)
T ss_pred EEEEEe
Confidence 888864
No 92
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=1e-12 Score=108.77 Aligned_cols=71 Identities=15% Similarity=0.343 Sum_probs=57.3
Q ss_pred EEEEEEEecCCCCeEEEEECCEEee---cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVV---ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~---~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
++|.|.+.|.|.|.++|+|+|..+. ...++.+.. . ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~-~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP-E--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEec-C--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986432 223444322 1 237999999999999999999999999988888877
No 93
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.39 E-value=4e-12 Score=108.32 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=68.7
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEE--cC--CEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQH--DG--NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~--~g--~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
|+.++|.|.+.|.|++.++|+|++..+..+ .++.+.. .+ ..+.|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999988654 3555442 22 236799999999999999999999999999999999
Q ss_pred eecCCC
Q psy16863 439 VLVPKA 444 (1075)
Q Consensus 439 V~~~~~ 444 (1075)
|..+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 987653
No 94
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.39 E-value=3e-12 Score=104.29 Aligned_cols=71 Identities=20% Similarity=0.421 Sum_probs=62.4
Q ss_pred eEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 366 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
.++|.|.+.|.|.|.++|+|+|..+..+.++.+..++. |.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999998777777766665 567799999999999999999999998888765
No 95
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.38 E-value=3.5e-12 Score=111.85 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=74.1
Q ss_pred CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-----CcEEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-----KIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-----~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~ 423 (1075)
+|.|. .+.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+... .++.+........|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 46664 566788999999999999999999999999999776543 244444445567899999999999999999
Q ss_pred EEeCCCceeeEEEEEe
Q psy16863 424 AENAVGRSHCSCELSV 439 (1075)
Q Consensus 424 a~n~~g~~~~s~~l~V 439 (1075)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999988877764
No 96
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.38 E-value=3.7e-12 Score=106.14 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
|+++.|.|.+.|.|.|.|+|+|++..+....++.+...+....|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 7899999999999999999999999988777777777777778999999999999999999999998876655544
No 97
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=3.3e-12 Score=109.65 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV 428 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~ 428 (1075)
||.+...+.+..+.+|+.+.|.|.+.|.|.+.++|+|++..+....... ..+ ..|.|.+++.+|+|.|+|.|.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~--~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSG--AVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeC--CEEEECCCCcccCEEEEEEEEECC
Confidence 4556667788889999999999999999999999999988776554432 222 359999999999999999999999
Q ss_pred CceeeEEEEEee
Q psy16863 429 GRSHCSCELSVL 440 (1075)
Q Consensus 429 g~~~~s~~l~V~ 440 (1075)
|....++.|.|.
T Consensus 77 G~~~~~~~l~V~ 88 (88)
T cd04968 77 GKDTHQGRIYVQ 88 (88)
T ss_pred CcEEEEEEEEEC
Confidence 999888888763
No 98
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.38 E-value=4.2e-12 Score=104.45 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=62.3
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
++|.|.+.|.|.|.|.|+|+|..+.. ..++.+..+ .....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999999974 456665544 34557999999999999999999999999988888765
No 99
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.38 E-value=2.1e-12 Score=107.74 Aligned_cols=78 Identities=15% Similarity=0.298 Sum_probs=65.1
Q ss_pred ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~ 835 (1075)
++..+.+|+.+.|.|.+.+. .+.+.|+|||.+|..+.++.+. . ..|.|.+++.+|+|.|+|.|.|..|.+...+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~---~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G---EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C---CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 34568899999999999986 5789999999999877776653 1 2799999999999999999999999976666
Q ss_pred EEEE
Q psy16863 836 FLKL 839 (1075)
Q Consensus 836 ~l~V 839 (1075)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 5543
No 100
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.37 E-value=5.4e-12 Score=110.59 Aligned_cols=89 Identities=16% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecC--CcEEEEEee---CcEEEEEEccccC-CCCeEE
Q psy16863 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVES--DNVKILKET---LGVCHLKIHALEV-ADQAEW 820 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~--~~~~~~~~~---~~~~~L~I~~~~~-~D~G~Y 820 (1075)
||.+.. .....+..|+.+.|.|.+.|.|.| .|.|++++.++... .++.+.... .....|.|.+++. +|.|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 565543 456778999999999999999999 69999999988754 466665432 2245899999998 559999
Q ss_pred EEEEEeCCceEEEEEEE
Q psy16863 821 KCIATNDFGQSITSCFL 837 (1075)
Q Consensus 821 ~C~A~N~~G~~~~s~~l 837 (1075)
+|.|.|.+|.+...+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998877665
No 101
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.37 E-value=2.7e-12 Score=110.44 Aligned_cols=77 Identities=22% Similarity=0.444 Sum_probs=60.4
Q ss_pred CCeEEEEEEEecCCCCeEEEEEC----CEEeecCCc--EEEEEe------eCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRD----DQQVVESDN--VKILKE------TLGVCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~----g~~i~~~~~--~~~~~~------~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
|+.++|.|.+.|.|.|.|+|+|+ |..+..... ..+... ......|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999994 555543322 111111 112358999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy16863 831 SITSCFLKL 839 (1075)
Q Consensus 831 ~~~s~~l~V 839 (1075)
+..++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999887
No 102
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.37 E-value=2.3e-12 Score=110.63 Aligned_cols=77 Identities=22% Similarity=0.433 Sum_probs=59.1
Q ss_pred CCeEEEEEEEecCCCCeEEEEECC----EEeecCC--cEEEEEe------eCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDD----QQVVESD--NVKILKE------TLGVCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g----~~i~~~~--~~~~~~~------~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
|+.++|.|.+.|.|.|.|+|+|++ ..+.... ....... ......|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999964 3332221 1111111 012347999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy16863 831 SITSCFLKL 839 (1075)
Q Consensus 831 ~~~s~~l~V 839 (1075)
+.+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999887
No 103
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.37 E-value=4.2e-12 Score=108.62 Aligned_cols=80 Identities=13% Similarity=0.284 Sum_probs=65.1
Q ss_pred cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE-
Q psy16863 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT- 833 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~- 833 (1075)
..++.+.+|++++|.|.+.|. .|.|.|+|+|.++... ++.+.. . ...|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~-~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSN-D--NRTLTFNNVTRSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeC-C--CCEEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence 346778999999999999999 9999999999988653 444332 1 237999999999999999999999998655
Q ss_pred EEEEEE
Q psy16863 834 SCFLKL 839 (1075)
Q Consensus 834 s~~l~V 839 (1075)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 555555
No 104
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.37 E-value=2e-12 Score=106.35 Aligned_cols=70 Identities=30% Similarity=0.522 Sum_probs=57.5
Q ss_pred EEEEEEEecCCCCeEEEEECCEEee--cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE-EEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVV--ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS-ITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~s~~l~V 839 (1075)
++|.|.+.|.|.|.|+|+|++.++. ...++... ..+ .|.|.+++.+|+|.|+|.|.|.+|.. +.++.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--RSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--CCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999987 34455442 223 69999999999999999999999985 45677665
No 105
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.37 E-value=4.3e-12 Score=102.11 Aligned_cols=63 Identities=35% Similarity=0.615 Sum_probs=52.1
Q ss_pred CCeEEEEEEEEccCCCeeEEEECCEEcCCCCee-----EEEECCCCceeeEEEEEEEEeCCeeEEEEEEE
Q psy16863 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH-----KIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925 (1075)
Q Consensus 861 g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~-----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 925 (1075)
|++++|+|.+.|.|.|.|+|+|+|.++..+.+. .|.+... .|+|.|+|.|.|.+|..++++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 678999999999999999999999998654322 3444433 47999999999999999988876
No 106
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.37 E-value=7.8e-12 Score=107.69 Aligned_cols=84 Identities=19% Similarity=0.397 Sum_probs=71.5
Q ss_pred cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863 356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s 434 (1075)
+..+.+.+|+.+.|.|.+.|.|.+.+.|||+|..+....++.+.. ++....|.|.++..+|+|.|+|.|.|..|....+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 356788999999999999999999999999999988777665543 3445679999999999999999999999999877
Q ss_pred EEEEe
Q psy16863 435 CELSV 439 (1075)
Q Consensus 435 ~~l~V 439 (1075)
..|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 76654
No 107
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.36 E-value=2.4e-12 Score=104.57 Aligned_cols=69 Identities=28% Similarity=0.476 Sum_probs=57.9
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
+.|.|.+.|.|.|.+.|+|++..+.. .++.+. . ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~--~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL--D--DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEe--e--CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999887754 345443 2 237999999999999999999999999988887764
No 108
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.36 E-value=4.1e-12 Score=105.02 Aligned_cols=73 Identities=22% Similarity=0.431 Sum_probs=60.3
Q ss_pred CCeEEEEEEEecCCCCeEEEEE-CCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFR-DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k-~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
|+.+.|.|.+.|.|.|.+.|++ ++..+....++.+.. . ..|.|.++..+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~--~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD--N--GTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec--C--CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999999999999997 677766555554432 2 26999999999999999999999999887777654
No 109
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.36 E-value=3.4e-12 Score=103.68 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=55.6
Q ss_pred EEEEEEEEccCCCeeEEEECCEEcCCCC-----eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863 864 VNLECKVIGVPQPTLKWFKDGRELKAGD-----IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928 (1075)
Q Consensus 864 ~~L~C~v~g~p~p~v~W~k~g~~l~~~~-----~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 928 (1075)
++|.|.+.|.|.|.++|+|||.+|..+. ...|.+......|+|.|+|.|.|.+|..+.+.++.++
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999997653 2456777778899999999999999998888877664
No 110
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.36 E-value=8.3e-12 Score=105.43 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=64.2
Q ss_pred CeEEEEEEEecCCCc--EEEEEECCEecCCC---CcEE-EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 365 TRARLLVEIRSPTEI--KIHWYRNDRKLEEN---KIYR-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 365 ~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~---~~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
++++|.|.+.|.|.+ .++|+|||..|... .++. +........|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999866 68999999988543 2332 22223345799999999999999999999999999999999
Q ss_pred eecCC
Q psy16863 439 VLVPK 443 (1075)
Q Consensus 439 V~~~~ 443 (1075)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98754
No 111
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.36 E-value=7.5e-12 Score=111.14 Aligned_cols=91 Identities=23% Similarity=0.437 Sum_probs=71.9
Q ss_pred CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-----CCcEEEEEcCCEEEEEEc--ccCCCCceeEE
Q psy16863 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-----NKIYRTQHDGNFYFIDLS--SVSLFDSGRWT 421 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-----~~~~~~~~~g~~~~L~I~--~v~~~d~G~Y~ 421 (1075)
||.|...+.+..+.+|+++.|.|.+.|.|.|.|+|+|+|..+.. ..+.....++....+.+. .+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 57888888999999999999999999999999999999998865 122333445555444443 34689999999
Q ss_pred EEEEeCCCc-eeeEEEEEe
Q psy16863 422 CLAENAVGR-SHCSCELSV 439 (1075)
Q Consensus 422 C~a~n~~g~-~~~s~~l~V 439 (1075)
|.|+|..|. .+.++.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 556666665
No 112
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.36 E-value=5.2e-12 Score=110.11 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=64.4
Q ss_pred EEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccc-----cCCCCeEEEEEEE
Q psy16863 751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL-----EVADQAEWKCIAT 825 (1075)
Q Consensus 751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~-----~~~D~G~Y~C~A~ 825 (1075)
|+..+.+..+..|+++.|.|.+.|.|.|.|+|+|||..+.............+ .|.|.++ +.+|.|.|+|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCCCcCEEEEEEEE
Confidence 34455667788999999999999999999999999999875543212112223 4666666 6899999999999
Q ss_pred eC-CceEEE-EEEEE
Q psy16863 826 ND-FGQSIT-SCFLK 838 (1075)
Q Consensus 826 N~-~G~~~~-s~~l~ 838 (1075)
|. .|...+ .+.|.
T Consensus 80 N~~~G~~~s~~~~l~ 94 (95)
T cd05722 80 NDSLGSIVSRTARLT 94 (95)
T ss_pred CCccCcEEEeeeEEe
Confidence 99 998743 45444
No 113
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.35 E-value=3.4e-12 Score=105.78 Aligned_cols=73 Identities=21% Similarity=0.382 Sum_probs=59.1
Q ss_pred EeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 752 IEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 752 ~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
+..++++.+..|+++.|.|.+.|.|.| +|+|+|||.++... +. .....|.|.++ .|+|.|.|.|+|.+|.
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~-----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA-----PSPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC-----CCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 445567789999999999999999999 79999999998641 11 11237889887 5889999999999997
Q ss_pred EEE
Q psy16863 831 SIT 833 (1075)
Q Consensus 831 ~~~ 833 (1075)
..+
T Consensus 73 ~~s 75 (81)
T cd05749 73 TTS 75 (81)
T ss_pred EEe
Confidence 654
No 114
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.34 E-value=9.7e-12 Score=106.17 Aligned_cols=81 Identities=19% Similarity=0.350 Sum_probs=67.2
Q ss_pred eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEE-EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 437 (1075)
..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 457899999999999999999999999999997664431 1222334568999999999999999999999999888877
Q ss_pred Ee
Q psy16863 438 SV 439 (1075)
Q Consensus 438 ~V 439 (1075)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 65
No 115
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.34 E-value=4.1e-12 Score=101.96 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=55.3
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
++|+|.+.|.|.|+++|+|||.++..+ .++.. . + ..|.|.+++.+|+|.|+|.|+|..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~---~-~-~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV---D-G-YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe---C-C-CEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 479999999999999999999998765 33322 1 2 37999999999999999999999776665555544
No 116
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.34 E-value=5.7e-12 Score=103.59 Aligned_cols=73 Identities=25% Similarity=0.442 Sum_probs=64.9
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
|+.+.|.|.+.|.|.+.++|+|++..+....++.+..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 788999999999999999999999999887777665544 4899999999999999999999999988887765
No 117
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.34 E-value=6.5e-12 Score=111.79 Aligned_cols=72 Identities=26% Similarity=0.463 Sum_probs=59.2
Q ss_pred CCCeEEEEEEEEccCCCeeEEEECCEEcCCC-Cee-------------EEEECCCC-ceeeEEEEEEEEeCCeeEEEEEE
Q psy16863 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAG-DIH-------------KIISGEDG-TCCLGIYTCEAHNCMGTTSSSAA 924 (1075)
Q Consensus 860 ~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~-~~~-------------~i~~~~~~-~~d~G~Y~C~a~N~~G~~~~~~~ 924 (1075)
.|..++|.|.+.|.|.|.++|+|||..|... .++ .|.+.... ..|.|.|+|.|.|.+|.++.++.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 4679999999999999999999999998643 222 34444444 47999999999999999999999
Q ss_pred EEEecCC
Q psy16863 925 LLGFEDK 931 (1075)
Q Consensus 925 l~v~~~~ 931 (1075)
|.+.++|
T Consensus 102 L~~~~~p 108 (109)
T cd05773 102 LVSTSRP 108 (109)
T ss_pred EEecCCC
Confidence 9987665
No 118
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.33 E-value=5.6e-12 Score=107.03 Aligned_cols=78 Identities=15% Similarity=0.366 Sum_probs=64.1
Q ss_pred eeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
.+..|+++.|.|.+.|.|.|.++|+|+|..+........ ......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES---RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee---cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 466799999999999999999999999998865443321 22346899999999999999999999999987776665
Q ss_pred E
Q psy16863 839 L 839 (1075)
Q Consensus 839 V 839 (1075)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 3
No 119
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.33 E-value=6.8e-12 Score=104.22 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=61.8
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
+.|.|.+.|.|.|.+.|+|+++.+..+.+..+..... ...|.|.+++.+|.|.|+|.|.|..|.+..++.|.|+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~-~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIAN-GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCC-CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3699999999999999999999987654433332222 3479999999999999999999999999999988875
No 120
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.33 E-value=5.7e-12 Score=104.71 Aligned_cols=71 Identities=17% Similarity=0.449 Sum_probs=58.1
Q ss_pred EEEEEEEec-CCCCeEEEEECCEEeecCCcEEE--EEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863 766 FKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKI--LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836 (1075)
Q Consensus 766 ~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~--~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~ 836 (1075)
+.|.|.+.| .|.|.++|+|+|+++..+.+... .........|.|.+++.+|+|.|+|.|.|.+|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 99999999999999976654331 222234578999999999999999999999999877654
No 121
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.32 E-value=9.3e-12 Score=106.68 Aligned_cols=79 Identities=29% Similarity=0.430 Sum_probs=64.2
Q ss_pred ceeeeecCCeEEEEEEE-ecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863 756 KSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 833 (1075)
.+..+.+|+++.|.|.+ .|.|.|.+.|+|+|.++.. ..++.+.. . ..|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--D--GNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--C--CEEEEeECCcccCEEEEEEEEeccCceee
Confidence 45678899999999998 7899999999999999876 34444432 2 37999999999999999999999998654
Q ss_pred -EEEEE
Q psy16863 834 -SCFLK 838 (1075)
Q Consensus 834 -s~~l~ 838 (1075)
.+.|.
T Consensus 80 ~~~~l~ 85 (86)
T cd05724 80 AAARLS 85 (86)
T ss_pred eeEEEE
Confidence 44443
No 122
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.32 E-value=9.5e-12 Score=103.36 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=63.4
Q ss_pred CeEEEEEEEec--CCCcEEEEEECCEecCC---CCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 365 TRARLLVEIRS--PTEIKIHWYRNDRKLEE---NKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 365 ~~v~l~C~~~g--~p~~~v~W~k~g~~l~~---~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
+++.|.|.+.+ .+++.|.|+|||++|.. +.++..... .....|.|.+++..|+|.|+|.|+|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46899999976 44889999999999962 234433211 1223599999999999999999999999999999999
Q ss_pred eecCC
Q psy16863 439 VLVPK 443 (1075)
Q Consensus 439 V~~~~ 443 (1075)
|.+||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99875
No 123
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.31 E-value=5.1e-12 Score=103.68 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=57.7
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
+.|.|.+.|.|.|.++|+|++.++... +.... .....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 479999999999999999999887543 22221 12347999999999999999999999999888887766
No 124
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.31 E-value=1.2e-11 Score=103.10 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=65.4
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 436 (1075)
.+..+.+|+.+.|.|.+.+. .+.|.|+|||.+|..+.++.+. +. .|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 45678899999999999886 5789999999999877776553 32 5899999999999999999999998776666
Q ss_pred EEe
Q psy16863 437 LSV 439 (1075)
Q Consensus 437 l~V 439 (1075)
|+|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 554
No 125
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.31 E-value=1.3e-11 Score=100.90 Aligned_cols=70 Identities=14% Similarity=0.311 Sum_probs=57.6
Q ss_pred EEEEEecCCCcEEEEEECCEecCCCCcEEEE--E-c--CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 369 LLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ--H-D--GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 369 l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~--~-~--g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
|.|.+.|.|.|+|+|||||.+|..+.+.... . . .....|.|.++..+|+|.|+|.|+|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 7899999999999999999999877654321 1 1 2345799999999999999999999999988776654
No 126
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.30 E-value=8.8e-12 Score=100.97 Aligned_cols=68 Identities=22% Similarity=0.532 Sum_probs=59.6
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 437 (1075)
+.|.|.+.|.|.|.|+|+|+|..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 479999999999999999999999877776665443 59999999999999999999999998877765
No 127
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.30 E-value=2e-11 Score=101.57 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=58.1
Q ss_pred EEEEEEecCCCcEEEEEECCEecCCCCcEEEEE-------cCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 368 RLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH-------DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 368 ~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~-------~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
.|.|.+.|.|.|.|+|||||++|..+.++.... ......|.|.+++.+|+|.|+|.|+|..|....+..+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 368999999999999999999998776543321 12345799999999999999999999999988776654
No 128
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.29 E-value=3e-11 Score=104.42 Aligned_cols=81 Identities=27% Similarity=0.430 Sum_probs=63.3
Q ss_pred CeeeeecCceeec---cCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccC-CCCceeEEEEEE
Q psy16863 350 PAFIRRLHDIAVK---VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVS-LFDSGRWTCLAE 425 (1075)
Q Consensus 350 p~~~~~~~~~~v~---~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~a~ 425 (1075)
|.|+..+.++.+. +|+.++|.|.+.|.|.|.|+|+|||..|...........+. .|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence 6677777776654 47899999999999999999999999996544333332222 47788874 699999999999
Q ss_pred eCCCcee
Q psy16863 426 NAVGRSH 432 (1075)
Q Consensus 426 n~~g~~~ 432 (1075)
|..|...
T Consensus 80 N~~G~~~ 86 (94)
T cd05848 80 NSIGSIL 86 (94)
T ss_pred cCCCeEE
Confidence 9999874
No 129
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.29 E-value=1.4e-11 Score=102.69 Aligned_cols=74 Identities=28% Similarity=0.303 Sum_probs=62.2
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCEecCCCCcE-EEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY-RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~-~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
|+.++|.|.+.|.|.|.|.|+++|..+...... .....+ ..|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG--GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccC--CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999999988765432 222222 35899999999999999999999999998888876
No 130
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.29 E-value=1.5e-11 Score=101.96 Aligned_cols=63 Identities=27% Similarity=0.550 Sum_probs=51.1
Q ss_pred eecCCCeEEEEEEEEccCCC-eeEEEECCEEcCC---CCeeEEEECCCCceeeEEEEEEEEeCCeeEEE
Q psy16863 857 VLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKA---GDIHKIISGEDGTCCLGIYTCEAHNCMGTTSS 921 (1075)
Q Consensus 857 ~~~~g~~~~L~C~v~g~p~p-~v~W~k~g~~l~~---~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~ 921 (1075)
.+.+|+.+.|.|.+.|.|.| +|+|+|||.++.. .....|.+.. ..|.|.|.|.|+|.+|...+
T Consensus 9 ~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~--~~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 9 SVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPG--LNETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEcc--ccCCeEEEEEEEeccCcEEe
Confidence 47799999999999999999 7999999999864 2233444433 35789999999999997765
No 131
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=1.3e-11 Score=104.38 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=57.3
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCE---Ee-ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQ---QV-VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~---~i-~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
|+.+.|.|.+.|.|.|.++|+|++. .+ .....+...........|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6889999999999999999999742 11 1111110000111235899999999999999999999999998888876
Q ss_pred E
Q psy16863 839 L 839 (1075)
Q Consensus 839 V 839 (1075)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 132
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.27 E-value=3.4e-11 Score=103.91 Aligned_cols=82 Identities=18% Similarity=0.349 Sum_probs=61.9
Q ss_pred CeEEeccceeeeec---CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEcccc-CCCCeEEEEEE
Q psy16863 749 PKFIEGLKSCQATV---NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE-VADQAEWKCIA 824 (1075)
Q Consensus 749 p~~~~~~~~~~~~~---g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~A 824 (1075)
|.|+..+.+..+.. |+.+.|.|.+.|.|.|.|+|+|++..+.......+... .+ .|.|.++. .+|+|.|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-~~--~L~i~~~~~~~d~G~Y~C~a 78 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GG--NLVISNPSKAKDAGRYQCLA 78 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-CC--EEEEecCCccCCCEEEEEEE
Confidence 56666666655443 46799999999999999999999998854332222222 22 68898887 59999999999
Q ss_pred EeCCceEEE
Q psy16863 825 TNDFGQSIT 833 (1075)
Q Consensus 825 ~N~~G~~~~ 833 (1075)
+|.+|.+.+
T Consensus 79 ~N~~G~~~S 87 (91)
T cd04967 79 SNIVGTVLS 87 (91)
T ss_pred EcCCCEEEe
Confidence 999998754
No 133
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.26 E-value=3e-11 Score=100.17 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=58.3
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCCC-cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeec
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEENK-IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 441 (1075)
++|.|.+.|.|.|.|+|+|+|.++.... ++.+...+ ..|.|.++..+|+|.|+|.|.|..|....+..++|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999999987654 33333322 3689999999999999999999999876555555543
No 134
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.25 E-value=6.7e-11 Score=101.68 Aligned_cols=80 Identities=19% Similarity=0.352 Sum_probs=62.7
Q ss_pred CCeeeeecCceeeccC---CeEEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEcCCEEEEEEcccC-CCCceeEEEE
Q psy16863 349 APAFIRRLHDIAVKVG---TRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDGNFYFIDLSSVS-LFDSGRWTCL 423 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~ 423 (1075)
.|.|...+.+..+.++ ..+.|.|.+.|.|.|.|+|+|++..+.. ..++.+ .++ .|.|.++. .+|+|.|+|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VGG---NLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-ECC---EEEECcCCcCCCCEEEEEE
Confidence 3667777777666554 4899999999999999999999998854 344433 233 48888885 6899999999
Q ss_pred EEeCCCcee
Q psy16863 424 AENAVGRSH 432 (1075)
Q Consensus 424 a~n~~g~~~ 432 (1075)
|+|..|...
T Consensus 77 A~N~~G~~~ 85 (93)
T cd05849 77 VSNIYGKVR 85 (93)
T ss_pred EEeCcceEE
Confidence 999999874
No 135
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.25 E-value=9.9e-11 Score=101.28 Aligned_cols=79 Identities=20% Similarity=0.347 Sum_probs=62.5
Q ss_pred CeeeeecCceeeccC---CeEEEEEEEecCCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccC-CCCceeEEEE
Q psy16863 350 PAFIRRLHDIAVKVG---TRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVS-LFDSGRWTCL 423 (1075)
Q Consensus 350 p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~ 423 (1075)
|.|...+.++.+.+| +.++|.|.+.|.|.+.|+|+|||..+... .++.+. ++ .|.|.++. ..|+|.|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g---~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-AG---NLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-CC---eEEEccCCccCcCEEEEEE
Confidence 667777777777665 58999999999999999999999998643 333332 33 37787755 5999999999
Q ss_pred EEeCCCcee
Q psy16863 424 AENAVGRSH 432 (1075)
Q Consensus 424 a~n~~g~~~ 432 (1075)
|+|..|...
T Consensus 78 A~N~~G~~~ 86 (94)
T cd05850 78 AINRCGTVV 86 (94)
T ss_pred EEcCcCcEE
Confidence 999999875
No 136
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.25 E-value=2.3e-11 Score=104.59 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=63.9
Q ss_pred eeeeecCCeEEEEEEEec-----CCCCeEEEEECCEEeecC--CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863 757 SCQATVNEEFKFTVQVSI-----SPEPKVSWFRDDQQVVES--DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g-----~p~p~v~W~k~g~~i~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G 829 (1075)
...+.+|+++.|.|.+.| .|.|.|+|||+|.++... ...++... . ..|.|.++..+|+|.|+|.|+|..|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~-~--~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ-K--DLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec-C--CeEEEccCCcccCeEEEEEEcCCCc
Confidence 456779999999999999 689999999999765321 22222222 2 3799999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy16863 830 QSITSCFLKL 839 (1075)
Q Consensus 830 ~~~~s~~l~V 839 (1075)
..+.++.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 9988887764
No 137
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.25 E-value=8.1e-11 Score=103.12 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCeeeeecCceeeccCCeEEEEEEEecCCCc-EEEEEECCEecCCC--CcEEEEEc----CCEEEEEEcccCC-CCceeE
Q psy16863 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEEN--KIYRTQHD----GNFYFIDLSSVSL-FDSGRW 420 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~--~~~~~~~~----g~~~~L~I~~v~~-~d~G~Y 420 (1075)
||.+. .+....+.+|+.+.|.|.+.|.|.| .|.|++++..+... .++.+... +....|.|.++.. +|.|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 55554 4567788999999999999999988 69999999988653 46666543 3446899999999 459999
Q ss_pred EEEEEeCCCceeeEEEE
Q psy16863 421 TCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 421 ~C~a~n~~g~~~~s~~l 437 (1075)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998877655
No 138
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.25 E-value=5.1e-11 Score=101.35 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=62.7
Q ss_pred CeEEEEEEEecCCCc--EEEEEECCEecCCCC---cEE-EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 365 TRARLLVEIRSPTEI--KIHWYRNDRKLEENK---IYR-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 365 ~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~---~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
++++|.|.+.|.|.+ .+.|+|||..|.... ++. .........|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999998866 779999999885332 221 11222334699999999999999999999999999999999
Q ss_pred eecCC
Q psy16863 439 VLVPK 443 (1075)
Q Consensus 439 V~~~~ 443 (1075)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98764
No 139
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.24 E-value=1e-10 Score=99.98 Aligned_cols=89 Identities=20% Similarity=0.339 Sum_probs=71.3
Q ss_pred CCeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecC--CcEEEEEee---CcEEEEEEccccCCC-CeEE
Q psy16863 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVES--DNVKILKET---LGVCHLKIHALEVAD-QAEW 820 (1075)
Q Consensus 748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~--~~~~~~~~~---~~~~~L~I~~~~~~D-~G~Y 820 (1075)
||.+ ...+...+..|+.++|.|.+.+.|+| .|.|..++..|..+ .+|.+.... ...+.|+|.++..+| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5655 45566789999999999999888876 68999888887653 577776542 346789999998767 8999
Q ss_pred EEEEEeCCceEEEEEEE
Q psy16863 821 KCIATNDFGQSITSCFL 837 (1075)
Q Consensus 821 ~C~A~N~~G~~~~s~~l 837 (1075)
.|.|.|.+|.+...+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998776655
No 140
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.24 E-value=9.6e-11 Score=100.89 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=64.9
Q ss_pred ecCceeeccCCeEEEEEEEecCCCcEEEEEE-CCEecCCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCCCc-e
Q psy16863 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYR-NDRKLEENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAVGR-S 431 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-~ 431 (1075)
.+....+.+|+.+.|.|.+.|.| +.++|++ +|..+....++.+.. .+....|+|.+++.+|+|.|+|.|.|..|. .
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~ 84 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTES 84 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcc
Confidence 34567899999999999999986 4999998 676666555554443 345568999999999999999999998654 4
Q ss_pred eeEEEEE
Q psy16863 432 HCSCELS 438 (1075)
Q Consensus 432 ~~s~~l~ 438 (1075)
..++.|.
T Consensus 85 ~~sv~l~ 91 (92)
T cd04977 85 EATVNLK 91 (92)
T ss_pred eeEEEEE
Confidence 5555554
No 141
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.24 E-value=4.3e-11 Score=103.01 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=64.1
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCEec--------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDRKL--------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~~l--------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~ 435 (1075)
|+.++|.|.+.|.|.|.+.|+|+|..+ ....++.+..++ .|.|.++..+|+|.|+|.|.|..|....++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 789999999999999999999998653 223455544333 499999999999999999999999999999
Q ss_pred EEEeecCCC
Q psy16863 436 ELSVLVPKA 444 (1075)
Q Consensus 436 ~l~V~~~~~ 444 (1075)
.|.|.....
T Consensus 78 ~l~V~~~~~ 86 (90)
T cd05726 78 YLEVTDVIA 86 (90)
T ss_pred EEEEeeccc
Confidence 999876543
No 142
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.24 E-value=6.7e-11 Score=101.19 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=64.3
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee-eEE
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSC 435 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~s~ 435 (1075)
.++.+.+|++++|.|.+.|. .+.|.|+|+|..+... ++.+..++. .|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 46789999999999999999 9999999999988654 444443333 599999999999999999999999754 345
Q ss_pred EEEe
Q psy16863 436 ELSV 439 (1075)
Q Consensus 436 ~l~V 439 (1075)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 5544
No 143
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.23 E-value=2.8e-11 Score=100.37 Aligned_cols=65 Identities=22% Similarity=0.439 Sum_probs=51.0
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccC----CCCeEEEEEEEeCCceEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEV----ADQAEWKCIATNDFGQSIT 833 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~----~D~G~Y~C~A~N~~G~~~~ 833 (1075)
+.|.|.+.|.|.|+|+|+|||.++.... ++.+. .. ...|.|.++.. +|+|.|+|.|+|.+|.+.+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~--~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-PD--SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-CC--CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999999999999999999986433 33332 22 23688888754 7999999999999998765
No 144
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.23 E-value=3.5e-11 Score=98.02 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=57.5
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
+.|.|.+.|.|.|.|.|+|++..+..+.. ..... ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKLNN--NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eEEcC--CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47999999999999999999988765432 22222 236999999999999999999999999888877766
No 145
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.23 E-value=1.2e-10 Score=99.79 Aligned_cols=81 Identities=15% Similarity=0.359 Sum_probs=66.7
Q ss_pred eeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~ 838 (1075)
.+..|+.+.|.|.+.+.|.+.+.|+|++..+.....+...........|.|.++..+|+|.|.|.|.|..|....++.|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 46689999999999999999999999999887655444332233456899999999999999999999999987777765
Q ss_pred E
Q psy16863 839 L 839 (1075)
Q Consensus 839 V 839 (1075)
|
T Consensus 85 v 85 (85)
T cd05729 85 V 85 (85)
T ss_pred C
Confidence 3
No 146
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.23 E-value=1.8e-10 Score=108.44 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=86.1
Q ss_pred EEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-CC-cEEEEEEC
Q psy16863 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TE-IKIHWYRN 386 (1075)
Q Consensus 309 ~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~v~W~k~ 386 (1075)
+|+|.+++.+|+|.|.|.+.+..|.....+.|.|.. +|.+...+......+|+.++|.|.+.|. |. ++|+|+|+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~----~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~ 77 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE----PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE 77 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec----CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence 699999999999999999999888888888999874 6776555555555588999999999884 53 59999999
Q ss_pred CEecCC-----CC----cEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCC
Q psy16863 387 DRKLEE-----NK----IYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVG 429 (1075)
Q Consensus 387 g~~l~~-----~~----~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g 429 (1075)
|..... .. ......+|.. +.|.|..-..++.+.|+|.+.|...
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 864221 11 1222344544 3566665555556699999988754
No 147
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.22 E-value=6.1e-11 Score=98.47 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=61.3
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 440 (1075)
+.|.|.+.|.|.|.+.|+|++..+..+.+..+...+....|.|.++..+|.|.|+|.|.|..|....++.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 46999999999999999999999876543333333333468999999999999999999999999988888774
No 148
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.21 E-value=5.7e-11 Score=97.38 Aligned_cols=64 Identities=28% Similarity=0.486 Sum_probs=54.4
Q ss_pred EEEEEEEEccCCCeeEEEECCEEcCCCC------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863 864 VNLECKVIGVPQPTLKWFKDGRELKAGD------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG 927 (1075)
Q Consensus 864 ~~L~C~v~g~p~p~v~W~k~g~~l~~~~------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v 927 (1075)
+.|.|.+.|.|.|.++|+|++.++..+. ...|.+......|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998875432 235677777788999999999999999998888876
No 149
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.21 E-value=6.3e-11 Score=97.86 Aligned_cols=66 Identities=18% Similarity=0.377 Sum_probs=51.0
Q ss_pred EEEEEEEecCCCCeEEEEECCEEee--cCCcEEEEEeeCcEEEEEEcccc----CCCCeEEEEEEEeCCceEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVV--ESDNVKILKETLGVCHLKIHALE----VADQAEWKCIATNDFGQSITS 834 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~--~~~~~~~~~~~~~~~~L~I~~~~----~~D~G~Y~C~A~N~~G~~~~s 834 (1075)
+.|.|.+.|.|.|.|+|+|+|.++. .+.++.+.. .. ..|.|..+. .+|+|.|+|.|+|.+|.+.+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR-RS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC-CC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4699999999999999999999764 344554422 22 378888764 247999999999999987654
No 150
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.21 E-value=6.2e-11 Score=98.09 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=57.3
Q ss_pred EEEEEEEecCCCcEEEEEECCEecC---CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLE---ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~---~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
++|.|.+.|.|.|.|+|+|+|.... ...++.+...+. .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986432 223444433333 5899999999999999999999999988888877
No 151
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.21 E-value=4.2e-11 Score=102.84 Aligned_cols=77 Identities=30% Similarity=0.459 Sum_probs=59.7
Q ss_pred CCeEEEEEEEecCCCcEEEEEECC----EecCCC-Cc-EEEE-------EcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRND----RKLEEN-KI-YRTQ-------HDGNFYFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g----~~l~~~-~~-~~~~-------~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
|+.++|.|.+.|.|.|.|+|+|++ ..+... .. .... ..+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999964 333221 11 1111 1233457999999999999999999999999
Q ss_pred eeeEEEEEee
Q psy16863 431 SHCSCELSVL 440 (1075)
Q Consensus 431 ~~~s~~l~V~ 440 (1075)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999998873
No 152
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.21 E-value=6.2e-11 Score=97.49 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=57.4
Q ss_pred EEEEEEEecCCCcEEEEEECCEecC--CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEe
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSV 439 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~--~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V 439 (1075)
++|.|.+.|.|.|.|+|||++.++. .+.++....++ .|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g---~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc---EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999887 34555543333 48899999999999999999999985 56666665
No 153
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.20 E-value=5.7e-11 Score=98.13 Aligned_cols=66 Identities=21% Similarity=0.417 Sum_probs=50.0
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccC----CCCeEEEEEEEeCCceEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEV----ADQAEWKCIATNDFGQSITS 834 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~----~D~G~Y~C~A~N~~G~~~~s 834 (1075)
+.|.|.+.|.|.|+|+|+|+|.++.... ++.+. ...+ .|.|..+.. .|.|.|+|.|.|.+|.+.++
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-PNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-CCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 4799999999999999999999874332 33322 2223 677777664 48899999999999987653
No 154
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.20 E-value=9.3e-11 Score=99.49 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=64.2
Q ss_pred eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
+....|+++.|.|.+.|.|.+.+.|+|+|..+....... .......|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 346789999999999999999999999999886544322 223345799999999999999999999999887776665
Q ss_pred e
Q psy16863 439 V 439 (1075)
Q Consensus 439 V 439 (1075)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 4
No 155
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.20 E-value=9.7e-11 Score=96.73 Aligned_cols=73 Identities=29% Similarity=0.545 Sum_probs=60.3
Q ss_pred CCeEEEEEEEecCCCcEEEEEE-CCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYR-NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.....++ .|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 67766665555444443 4889999999999999999999999887776654
No 156
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.20 E-value=6.2e-11 Score=100.55 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=60.1
Q ss_pred CCeEEEEEEEecC--CCCeEEEEECCEEeecCC----cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863 763 NEEFKFTVQVSIS--PEPKVSWFRDDQQVVESD----NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836 (1075)
Q Consensus 763 g~~~~l~C~v~g~--p~p~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~ 836 (1075)
|+++.|.|.+.|. |.|.++|+++++.+.... +..........+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 889999999887653221 1111111123568999999999999999999999999988888
Q ss_pred EEE
Q psy16863 837 LKL 839 (1075)
Q Consensus 837 l~V 839 (1075)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 766
No 157
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.20 E-value=7.1e-11 Score=95.85 Aligned_cols=69 Identities=26% Similarity=0.429 Sum_probs=57.4
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
++|.|.+.|.|.|.+.|+|++..+... ++....++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999998877543 44444332 5899999999999999999999999988877765
No 158
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.20 E-value=8.6e-11 Score=97.52 Aligned_cols=70 Identities=19% Similarity=0.469 Sum_probs=54.9
Q ss_pred EEEEEEEec-CCCCeEEEEECCEEeecCC----cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863 766 FKFTVQVSI-SPEPKVSWFRDDQQVVESD----NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836 (1075)
Q Consensus 766 ~~l~C~v~g-~p~p~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~ 836 (1075)
+.|+|.+.+ .|.+.++|||+|++|.... ++.+. .......|.|.+++.+|+|.|+|.|+|.+|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR-KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE-eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 469999875 6889999999999986432 23322 2234568999999999999999999999999877654
No 159
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.19 E-value=1e-10 Score=100.55 Aligned_cols=76 Identities=26% Similarity=0.495 Sum_probs=60.0
Q ss_pred CCeEEEEEEEecCCCcEEEEEEC----CEecCCCCc--EEEEEc-------CCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRN----DRKLEENKI--YRTQHD-------GNFYFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~----g~~l~~~~~--~~~~~~-------g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
|+.++|.|.+.|.|.|.|+|+|+ |..+..... ...... +....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999994 444443322 122111 22357999999999999999999999999
Q ss_pred eeeEEEEEe
Q psy16863 431 SHCSCELSV 439 (1075)
Q Consensus 431 ~~~s~~l~V 439 (1075)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 998988887
No 160
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.19 E-value=1.7e-10 Score=100.62 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=64.3
Q ss_pred eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCc--EEEEEcCCEEEEEEccc-----CCCCceeEEEEE
Q psy16863 352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YRTQHDGNFYFIDLSSV-----SLFDSGRWTCLA 424 (1075)
Q Consensus 352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~--~~~~~~g~~~~L~I~~v-----~~~d~G~Y~C~a 424 (1075)
|...|.+..+.+|+++.|.|.+.|.|.+.|+|+|||..+..... +.+..++. |.|.++ ..+|+|.|+|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~---l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGS---LLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCe---EEEeeeeccCCCCCcCEEEEEEE
Confidence 44566778888999999999999999999999999999875443 44444443 344444 689999999999
Q ss_pred EeC-CCce-eeEEEEE
Q psy16863 425 ENA-VGRS-HCSCELS 438 (1075)
Q Consensus 425 ~n~-~g~~-~~s~~l~ 438 (1075)
.|. .|.. +..+.|.
T Consensus 79 ~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 79 QNDSLGSIVSRTARLT 94 (95)
T ss_pred ECCccCcEEEeeeEEe
Confidence 999 8876 3344443
No 161
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.18 E-value=1.1e-10 Score=93.63 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=55.1
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
++|.|.+.|.|.|++.|+|||.++..+ .++ ..++. .|.|.++..+|+|.|+|.|+|..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~--~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY--HVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEE--EeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 479999999999999999999998765 333 23343 5999999999999999999998766555555444
No 162
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.18 E-value=1.5e-10 Score=100.00 Aligned_cols=84 Identities=10% Similarity=0.298 Sum_probs=64.7
Q ss_pred cceeeeecCCeEEEEEEEecCCCCeEEEEEC--------CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--------DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--------g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N 826 (1075)
++++.+.+|+++.|+|.+.+.|.+.+.|+|. +.....+.++.......+...|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 4567899999999999999999999999863 33233455776644434567899999999999999999998
Q ss_pred CCceEEEEEEEEE
Q psy16863 827 DFGQSITSCFLKL 839 (1075)
Q Consensus 827 ~~G~~~~s~~l~V 839 (1075)
..+. ..++.|.|
T Consensus 84 ~~~~-~~~~~l~v 95 (95)
T cd07701 84 MPVK-TSKAYLTV 95 (95)
T ss_pred ecCc-cEEEEEEC
Confidence 5443 55666654
No 163
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.18 E-value=1.2e-10 Score=96.80 Aligned_cols=70 Identities=21% Similarity=0.465 Sum_probs=58.0
Q ss_pred EEEEEEEec-CCCcEEEEEECCEecCCCCcEE---EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863 367 ARLLVEIRS-PTEIKIHWYRNDRKLEENKIYR---TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436 (1075)
Q Consensus 367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~---~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 436 (1075)
+.|.|.+.| .|.+.++|+|+|.++....+.. +........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 8999999999999997654432 444455678999999999999999999999998876654
No 164
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.16 E-value=8.4e-11 Score=98.37 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=52.3
Q ss_pred EEEEEEEecCCCCeEEEEECCEEee--------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE-EEEEE
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVV--------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS-ITSCF 836 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~--------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~s~~ 836 (1075)
++|.|.+.|.|.|.++|+|++.... ...++.+. .. ..|.|.+++.+|+|.|+|.|.|..|.+ ..++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--SN--GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe--cC--CeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence 4799999999999999999743211 23344432 22 379999999999999999999999987 33555
Q ss_pred EE
Q psy16863 837 LK 838 (1075)
Q Consensus 837 l~ 838 (1075)
|.
T Consensus 77 l~ 78 (79)
T cd05734 77 LT 78 (79)
T ss_pred Ee
Confidence 54
No 165
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.14 E-value=1.3e-10 Score=95.76 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=53.9
Q ss_pred eEEeccceeeeecCCeEEEEEEEecCCC-CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863 750 KFIEGLKSCQATVNEEFKFTVQVSISPE-PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827 (1075)
Q Consensus 750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~ 827 (1075)
.+...+....+.+|++++|+|.+.+.|. +.+.|+|||..|... ...|.|.++ .+|+|.|+|.|.|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~-----------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT-----------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc-----------CCeEEEeec-ccCCEEeEEECCCC
Confidence 3444556677899999999999999886 479999999987321 236999999 99999999999885
No 166
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.13 E-value=6e-10 Score=95.65 Aligned_cols=71 Identities=15% Similarity=0.330 Sum_probs=58.5
Q ss_pred ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEe--------ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV--------VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N 826 (1075)
+++.+.+|+++.|.|.+.+.|.|.|.|+|++..+ ..+.++.+.....+...|.|.+++.+|+|.|+|.|..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 4677999999999999999999999999987643 2345565544444467999999999999999999987
No 167
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.13 E-value=2.9e-10 Score=97.32 Aligned_cols=80 Identities=28% Similarity=0.523 Sum_probs=64.1
Q ss_pred ccceEeecCCeEEEEEEE-ecCCCCceEEEEeCCeEEec-CCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCce
Q psy16863 557 VENVKAKIGTSAILECQV-LVPPWPRSIYWYNKEGVVEA-SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVK 634 (1075)
Q Consensus 557 ~~~~~v~~G~~~~L~C~~-~~~p~p~~v~W~~~~~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 634 (1075)
+.+..+.+|+++.|.|.+ .+.|.| .+.|++++..+.. ..++.+..++ .|.|.+++.+|+|.|+|.|.|..|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLDNERVRIVDDG----NLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCCCCCEEEccCC----EEEEeECCcccCEEEEEEEEeccCce
Confidence 456778899999999998 678877 8999999988765 3444444322 79999999999999999999999987
Q ss_pred eeeeEEE
Q psy16863 635 QFSAAYV 641 (1075)
Q Consensus 635 ~~~~~~l 641 (1075)
....+.+
T Consensus 78 ~s~~~~l 84 (86)
T cd05724 78 ESAAARL 84 (86)
T ss_pred eeeeEEE
Confidence 6554444
No 168
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.13 E-value=1.3e-10 Score=99.86 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=63.4
Q ss_pred ceeeccCCeEEEEEEEec-----CCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 358 DIAVKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
...+.+|+++.|.|.+.+ .|.+.|.|||+|..+... ...++...+. .|.|.++..+|+|.|+|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence 456778999999999988 688899999999765321 2223333332 5899999999999999999999999
Q ss_pred eeeEEEEEe
Q psy16863 431 SHCSCELSV 439 (1075)
Q Consensus 431 ~~~s~~l~V 439 (1075)
.+.++.|+|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 988887765
No 169
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.11 E-value=5.7e-10 Score=93.13 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=56.2
Q ss_pred cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~ 828 (1075)
+++..+..|+++.|.|.+. .|.|+|+|+|||.+|..+ .++.+. + + .|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~--~-~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLY--R-D--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEE--C-C--cEEEeCCCHHHCEEEEEEEEecc
Confidence 4567789999999999986 478899999999999876 344432 2 2 59999999999999999999863
No 170
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.09 E-value=3.4e-10 Score=95.59 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=56.4
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCE---e--cCCCCc-EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDR---K--LEENKI-YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~---~--l~~~~~-~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 437 (1075)
|+.++|.|.+.|.|.|.++|||++. . +..... ..+.. .....|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 7899999999999999999999742 1 111110 00111 122469999999999999999999999998888877
Q ss_pred Ee
Q psy16863 438 SV 439 (1075)
Q Consensus 438 ~V 439 (1075)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 65
No 171
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.09 E-value=5.6e-10 Score=92.62 Aligned_cols=70 Identities=17% Similarity=0.425 Sum_probs=56.2
Q ss_pred EEEEEEEec-CCCcEEEEEECCEecCCC----CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863 367 ARLLVEIRS-PTEIKIHWYRNDRKLEEN----KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436 (1075)
Q Consensus 367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~----~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 436 (1075)
+.|.|.+.+ .|.+.++|||+|+.+... .++.+...+....|.|.++..+|+|.|+|.|+|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999864 678899999999988532 2344444556678999999999999999999999998876654
No 172
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.09 E-value=4.2e-10 Score=95.94 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=62.2
Q ss_pred eeeecCCeEEEEEEEec-----CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863 758 CQATVNEEFKFTVQVSI-----SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832 (1075)
Q Consensus 758 ~~~~~g~~~~l~C~v~g-----~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 832 (1075)
+.+.+|.+..|.|...+ +|.|.+.||||++++....+... . ...|.|.++..+|+|.|+|.|.|.+|...
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---~--~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---K--GSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---c--CCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 45778999999998754 26789999999999986554332 2 23799999999999999999999999876
Q ss_pred EEEEEEEE
Q psy16863 833 TSCFLKLN 840 (1075)
Q Consensus 833 ~s~~l~V~ 840 (1075)
.++...+.
T Consensus 80 ~~~t~t~~ 87 (92)
T cd05757 80 YNVTRTIS 87 (92)
T ss_pred EEEEEEEE
Confidence 66555554
No 173
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.08 E-value=1.5e-09 Score=92.79 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCeeeeecCceeeccCCeEEEEEEEecCCC-cEEEEEECCEecCCC--CcEEEEE----cCCEEEEEEcccCCCC-ceeE
Q psy16863 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTE-IKIHWYRNDRKLEEN--KIYRTQH----DGNFYFIDLSSVSLFD-SGRW 420 (1075)
Q Consensus 349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~--~~~~~~~----~g~~~~L~I~~v~~~d-~G~Y 420 (1075)
||.+ .....+.+.+|+.++|.|.+.+.|. ..|.|.+++..|..+ .++.+.. ++..+.|+|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5555 5667788999999999999977665 578999998887653 5776654 3678899999998767 8999
Q ss_pred EEEEEeCCCceeeEEEE
Q psy16863 421 TCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 421 ~C~a~n~~g~~~~s~~l 437 (1075)
.|.|.|..|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998876655
No 174
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.08 E-value=8.8e-10 Score=92.93 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=56.4
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeecCC----cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc--eEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESD----NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG--QSITSCF 836 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G--~~~~s~~ 836 (1075)
|++++|.|.+.|.|.+.+.|+++++...... +..+. .....+.|.|.+++.+|+|.|+|.|+|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVP-ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecC-CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999999999999999876432111 11111 111256899999999999999999999877 4555555
Q ss_pred EEEE
Q psy16863 837 LKLN 840 (1075)
Q Consensus 837 l~V~ 840 (1075)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 5553
No 175
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.08 E-value=9.7e-10 Score=94.80 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=60.4
Q ss_pred CeeeeecCceeecc---CCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccC-CCCceeEEEEEE
Q psy16863 350 PAFIRRLHDIAVKV---GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVS-LFDSGRWTCLAE 425 (1075)
Q Consensus 350 p~~~~~~~~~~v~~---G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~a~ 425 (1075)
|.|+..+.++.+.+ |+.+.|.|.+.|.|.+.|+|+|++..+...........+. .|.|.++. .+|+|.|+|.|+
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 56777777766544 4679999999999999999999999884322222222222 47788776 489999999999
Q ss_pred eCCCcee
Q psy16863 426 NAVGRSH 432 (1075)
Q Consensus 426 n~~g~~~ 432 (1075)
|..|...
T Consensus 80 N~~G~~~ 86 (91)
T cd04967 80 NIVGTVL 86 (91)
T ss_pred cCCCEEE
Confidence 9999764
No 176
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.07 E-value=5.7e-10 Score=94.61 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=60.1
Q ss_pred CCeEEEEEEEecC--CCcEEEEEECCEecCCCCcE----E-EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863 364 GTRARLLVEIRSP--TEIKIHWYRNDRKLEENKIY----R-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436 (1075)
Q Consensus 364 G~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~----~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 436 (1075)
|++++|.|.+.+. |.+.|+|+++++.+...... . .........|.|.+++.+|+|.|+|.|+|..|....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 88999999988765432111 1 111223468999999999999999999999999988888
Q ss_pred EEe
Q psy16863 437 LSV 439 (1075)
Q Consensus 437 l~V 439 (1075)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 776
No 177
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.07 E-value=3.9e-10 Score=93.50 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=49.2
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccC----CCCceeEEEEEEeCCCcee
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVS----LFDSGRWTCLAENAVGRSH 432 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~----~~d~G~Y~C~a~n~~g~~~ 432 (1075)
++|.|.+.|.|.|+|+|+|||..+... .++.+.... ..|.|.++. .+|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~--g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDS--GTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCC--CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 479999999999999999999988643 334333322 246777764 3789999999999999764
No 178
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.07 E-value=5.6e-10 Score=95.00 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=61.8
Q ss_pred cceeeeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863 755 LKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 833 (1075)
++...+.+|++++|.|.+.+ .|.+.+.|+|++..+.... . .. ...|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~-~~--~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M-DF--NGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c-cc--CCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 44566889999999999975 6889999999997654321 1 11 237999999999999999999999999988
Q ss_pred EEEE
Q psy16863 834 SCFL 837 (1075)
Q Consensus 834 s~~l 837 (1075)
++.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 8766
No 179
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.06 E-value=5e-10 Score=92.30 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=53.4
Q ss_pred eeeeecCceeeccCCeEEEEEEEecCCC-cEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863 351 AFIRRLHDIAVKVGTRARLLVEIRSPTE-IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~ 427 (1075)
.+...++...+.+|++++|.|.+.+.|. ..+.|||||..+.. ++ ..|.|.++ .+|+|.|+|+|.|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~--~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TT--NSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cC--CeEEEeec-ccCCEEeEEECCCC
Confidence 4455667788999999999999988774 57999999998732 12 24788899 99999999999875
No 180
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.05 E-value=8.7e-10 Score=91.08 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=48.3
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccCC----CCceeEEEEEEeCCCceee
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVSL----FDSGRWTCLAENAVGRSHC 433 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~~----~d~G~Y~C~a~n~~g~~~~ 433 (1075)
+.|.|.+.|.|.|+|+|+|||.++... .++.+...+. .|.|..+.. .|+|.|+|.|+|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 479999999999999999999987433 3344333333 355655543 4789999999999998653
No 181
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.04 E-value=1.2e-09 Score=90.28 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=49.3
Q ss_pred EEEEEEEecCCCcEEEEEECCEecC--CCCcEEEEEcCCEEEEEEcccC----CCCceeEEEEEEeCCCceee
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFYFIDLSSVS----LFDSGRWTCLAENAVGRSHC 433 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~--~~~~~~~~~~g~~~~L~I~~v~----~~d~G~Y~C~a~n~~g~~~~ 433 (1075)
+.|.|.+.|.|.|.|+|+|+|..+. .+.++.+...+. .|.|..+. .+|+|.|+|.|+|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4799999999999999999999764 344555433332 47777653 24799999999999997653
No 182
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.04 E-value=1.6e-09 Score=91.31 Aligned_cols=76 Identities=11% Similarity=0.240 Sum_probs=56.6
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCEecCCCC----cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC--ceeeEEEE
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENK----IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG--RSHCSCEL 437 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~----~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g--~~~~s~~l 437 (1075)
|++++|.|.+.+.|.+.+.|+++++...... +..+......+.|.|.+++.+|+|.|+|.|+|..+ ....+..|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999999886543211 11111222356899999999999999999999876 44555555
Q ss_pred Ee
Q psy16863 438 SV 439 (1075)
Q Consensus 438 ~V 439 (1075)
+|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 55
No 183
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.01 E-value=3.8e-09 Score=90.31 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=66.0
Q ss_pred eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEE-EEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT-QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 437 (1075)
..+.+|+.+.|.|.+.+.|.+.+.|+|++..+........ ......+.|.|.++..+|+|.|.|.+.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 4567899999999999999999999999998875544332 223445679999999999999999999999998777766
Q ss_pred Ee
Q psy16863 438 SV 439 (1075)
Q Consensus 438 ~V 439 (1075)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 54
No 184
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.01 E-value=5.4e-09 Score=98.46 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=81.8
Q ss_pred EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEE
Q psy16863 494 ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQ 573 (1075)
Q Consensus 494 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~ 573 (1075)
.|.|.+++..|+|.|.|.+.+..|.......|.|.. +|.+...+.......|+.++|.|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~--------------------~P~v~~~~~~~~~~~~~~~~L~C~ 61 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE--------------------PPRVRLSLEKLVSMIEEPQTLICH 61 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec--------------------CCceEEeCCCceeecCCcEEEEEE
Confidence 588999999999999999999888888888888862 334444444444557899999999
Q ss_pred EecCCC-CceEEEEeCCeEEec----CCcEE---EEEcCCceE----EEEEeeeeecCCceEEEEEECCCC
Q psy16863 574 VLVPPW-PRSIYWYNKEGVVEA----SDKYH---IMADGLGGY----SIEINYLEAVDDGEWKCVATSSSG 632 (1075)
Q Consensus 574 ~~~~p~-p~~v~W~~~~~~i~~----~~~~~---~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g 632 (1075)
+.+..+ +..|.|++++..... ..... ...++.+.+ .|.+..-..++...|+|.+.+...
T Consensus 62 a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 62 IAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred ECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 998643 358999998754211 11111 112222222 466665555667799999988654
No 185
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.01 E-value=2.8e-09 Score=92.06 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=63.0
Q ss_pred cCceeeccCCeEEEEEEEecCCCcEEEEEEC--------CEecCCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEe
Q psy16863 356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--------DRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAEN 426 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--------g~~l~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n 426 (1075)
+.++.+.+|++++|.|.+.+.|.+.+.||+. +.....+.|+....+ .....|+|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 3567899999999999999999999999863 322333456655333 4556899999999999999999998
Q ss_pred CCCceeeEEEEEe
Q psy16863 427 AVGRSHCSCELSV 439 (1075)
Q Consensus 427 ~~g~~~~s~~l~V 439 (1075)
..+. ..++.|.|
T Consensus 84 ~~~~-~~~~~l~v 95 (95)
T cd07701 84 MPVK-TSKAYLTV 95 (95)
T ss_pred ecCc-cEEEEEEC
Confidence 5443 55666654
No 186
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.00 E-value=3.1e-09 Score=88.75 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=55.9
Q ss_pred cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863 356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV 428 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~ 428 (1075)
|.+..+..|+++.|.|.+.+ +.++|.|+|||.+|..+ .++.+ .++. |.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~~---L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRDG---LLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECCc---EEEeCCCHHHCEEEEEEEEecc
Confidence 45678899999999999854 57899999999999776 44444 3333 8899999999999999998863
No 187
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.99 E-value=2.5e-09 Score=91.90 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=60.2
Q ss_pred ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc-eEE
Q psy16863 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG-QSI 832 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G-~~~ 832 (1075)
+.+.+..|+++.|+|.+.+ |.+.+.|+|++..+.... ...+.... ..|.|.+++.+|+|.|+|.|.|..+ ...
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE---DGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC---CCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 3456889999999999987 888999999998776542 11222222 2599999999999999999997654 344
Q ss_pred EEEEEEEE
Q psy16863 833 TSCFLKLN 840 (1075)
Q Consensus 833 ~s~~l~V~ 840 (1075)
.+..|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 45666554
No 188
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.94 E-value=4e-09 Score=89.72 Aligned_cols=78 Identities=17% Similarity=0.334 Sum_probs=62.6
Q ss_pred eecCceeeccCCeEEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee
Q psy16863 354 RRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH 432 (1075)
Q Consensus 354 ~~~~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 432 (1075)
..+....+.+|++++|.|.+.+ .|.+.+.|++++..+.... ...+ ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~~~~--~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----MDFN--GILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----cccC--CEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 3456678899999999999864 6788999999997664321 1112 2589999999999999999999999988
Q ss_pred eEEEE
Q psy16863 433 CSCEL 437 (1075)
Q Consensus 433 ~s~~l 437 (1075)
.++.|
T Consensus 80 ~~~~l 84 (85)
T cd05754 80 ATATL 84 (85)
T ss_pred EEEEE
Confidence 87765
No 189
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.93 E-value=6.6e-09 Score=90.53 Aligned_cols=83 Identities=8% Similarity=0.228 Sum_probs=61.6
Q ss_pred ceeeeecCCeEEEEEEEecCCCCeEEEEECCEE-e-------ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQ-V-------VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~-i-------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~ 827 (1075)
++..+.+|+++.|.|.+.+.|.+.+.|++.+.. + ....++.+.........|+|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 456788999999999999989999999863321 1 12346665433344678999999999999999999987
Q ss_pred CceEEEEEEEEE
Q psy16863 828 FGQSITSCFLKL 839 (1075)
Q Consensus 828 ~G~~~~s~~l~V 839 (1075)
.. .+.++.|+|
T Consensus 85 ~~-~~~~~~~~v 95 (95)
T cd05717 85 PV-QTAKATVTV 95 (95)
T ss_pred CC-ceEEEEEEC
Confidence 53 355555554
No 190
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.93 E-value=1.2e-08 Score=87.64 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=60.7
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEec--------CCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--------EENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l--------~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~ 427 (1075)
.++.+.+|+++.|.|.+.+.|.+.|.|+|++..+ ..+.++.+... .....|.|.++..+|+|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 5678999999999999999999999999987643 12345544333 34568999999999999999999873
Q ss_pred CCceeeEEEEE
Q psy16863 428 VGRSHCSCELS 438 (1075)
Q Consensus 428 ~g~~~~s~~l~ 438 (1075)
-..++.+.|+
T Consensus 85 -~~~~~~~~~~ 94 (95)
T cd05882 85 -PVRTAKATVT 94 (95)
T ss_pred -ccccEEEEEE
Confidence 2333444444
No 191
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.91 E-value=6.3e-09 Score=88.02 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=58.0
Q ss_pred CCeEEEEEEEecCCC--CeEEEEECCEEeec---CC--cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863 763 NEEFKFTVQVSISPE--PKVSWFRDDQQVVE---SD--NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~--p~v~W~k~g~~i~~---~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~ 835 (1075)
|+++.|.|.+.+.|. ..+.|.+.++.+.. .. +..........+.|.|.+++.+|+|.|+|.|+|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999997664 57899988764321 11 111111112356899999999999999999999999988888
Q ss_pred EEEEE
Q psy16863 836 FLKLN 840 (1075)
Q Consensus 836 ~l~V~ 840 (1075)
.|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88875
No 192
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.90 E-value=7.1e-09 Score=89.02 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=58.6
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC----cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc-e
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK----IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR-S 431 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~----~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-~ 431 (1075)
..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.... ++.... + .|.|.+++.+|+|.|+|.|.|..+. .
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~-~---~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE-D---GLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC-C---CEEEccCCHHHCEEEEEEEecCcccee
Confidence 4567889999999999976 778999999998776542 333322 2 3889999999999999999977543 3
Q ss_pred eeEEEEEe
Q psy16863 432 HCSCELSV 439 (1075)
Q Consensus 432 ~~s~~l~V 439 (1075)
..+..|.|
T Consensus 79 ~~~~~l~V 86 (89)
T cd04979 79 LATYSLNV 86 (89)
T ss_pred EeEEEEEE
Confidence 44455554
No 193
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.89 E-value=4.6e-09 Score=87.79 Aligned_cols=70 Identities=20% Similarity=0.413 Sum_probs=53.0
Q ss_pred EEEEEEEecCCCCceEEEEeCCeEEe--------cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeE
Q psy16863 568 AILECQVLVPPWPRSIYWYNKEGVVE--------ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639 (1075)
Q Consensus 568 ~~L~C~~~~~p~p~~v~W~~~~~~i~--------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 639 (1075)
++|.|.+.|.|.| .+.|+++++... ...++.+..++ +|.|.++..+|+|.|+|.|.|..|.......
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG----SLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEecCC----eEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 5799999999988 899999754321 23344443333 7999999999999999999999998765554
Q ss_pred EEE
Q psy16863 640 YVH 642 (1075)
Q Consensus 640 ~l~ 642 (1075)
.|.
T Consensus 76 ~l~ 78 (79)
T cd05734 76 VLT 78 (79)
T ss_pred EEe
Confidence 443
No 194
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.89 E-value=5.6e-09 Score=87.65 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=53.3
Q ss_pred eeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863 759 QATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 832 (1075)
.+.+|++++|.|.+.+ .|.+.+.|||+|..+.... ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~---------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH---------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC---------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 4789999999999864 5677899999998764211 134799999999999999999999998543
No 195
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.89 E-value=5.3e-09 Score=89.23 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=60.1
Q ss_pred eeeccCCeEEEEEEEec-----CCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863 359 IAVKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC 433 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~ 433 (1075)
+.+.+|+++.|.|...+ +|.+.+.|||||.++....+... .+ ..|.|.++..+|+|.|+|.|.|..+....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~--~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KG--SKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cC--CEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 46788999999998643 25789999999999976554332 22 25899999999999999999999887765
Q ss_pred EEEEEe
Q psy16863 434 SCELSV 439 (1075)
Q Consensus 434 s~~l~V 439 (1075)
.+..++
T Consensus 81 ~~t~t~ 86 (92)
T cd05757 81 NVTRTI 86 (92)
T ss_pred EEEEEE
Confidence 554444
No 196
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.87 E-value=2.1e-08 Score=84.59 Aligned_cols=70 Identities=26% Similarity=0.453 Sum_probs=56.0
Q ss_pred eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce-EEEEEE
Q psy16863 758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ-SITSCF 836 (1075)
Q Consensus 758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~s~~ 836 (1075)
..+..|+.+.|.|.+.+.|.+.+.|++++..+..+.. .|.|.++..+|+|.|+|.|.|..|. .+.++.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN-----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS-----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee-----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence 5588999999999999999999999999988763321 1778899999999999999997653 333444
Q ss_pred EE
Q psy16863 837 LK 838 (1075)
Q Consensus 837 l~ 838 (1075)
|.
T Consensus 78 v~ 79 (80)
T PF13895_consen 78 VT 79 (80)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 197
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.87 E-value=4.5e-09 Score=88.95 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=56.6
Q ss_pred ceeeeecCCeEEEEEE-EecCCCCeEEEEECCEEe--ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863 756 KSCQATVNEEFKFTVQ-VSISPEPKVSWFRDDQQV--VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS 831 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~-v~g~p~p~v~W~k~g~~i--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 831 (1075)
....+.+|+.+.|.|. -.|.|.|.|.|+|++.++ ..+.+..+. ...| .|.|.+++.+|+|.|+|.|+|.++..
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~-~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS-QTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe-CCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 3456889999999997 457899999999999865 233333332 2233 79999999999999999999987654
No 198
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.86 E-value=1.2e-08 Score=87.00 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=56.1
Q ss_pred eeecCCeEEEEEEEecCCCCeEEEEECCEEe-e-------------cCCcEEEEE--eeCcEEEEEEccccCCCCeEEEE
Q psy16863 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQV-V-------------ESDNVKILK--ETLGVCHLKIHALEVADQAEWKC 822 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i-~-------------~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C 822 (1075)
.+.+|++++|.|..++.|.+.+.|+++++.. . ..+++.... .+.+.+.|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4778999999999999999999999877432 1 112232222 12356789999999999999999
Q ss_pred EEEeCCceE
Q psy16863 823 IATNDFGQS 831 (1075)
Q Consensus 823 ~A~N~~G~~ 831 (1075)
.+.|..++.
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 999987764
No 199
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.85 E-value=1.1e-08 Score=86.80 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=55.0
Q ss_pred eeeecCCeEEEEEE-Eec----CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863 758 CQATVNEEFKFTVQ-VSI----SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832 (1075)
Q Consensus 758 ~~~~~g~~~~l~C~-v~g----~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 832 (1075)
+.+..|.+..|.|. ..+ .+.|+++||||+++|....+......+ ...|.|.++..+|+|.|+|+|.|.+|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 34667889999997 233 467899999999998755433222122 23699999999999999999999987653
No 200
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.85 E-value=2e-08 Score=85.73 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=57.7
Q ss_pred eeeecCCeEEEEEEEecCCCCeEEEEECC--EEe----ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE-eCCce
Q psy16863 758 CQATVNEEFKFTVQVSISPEPKVSWFRDD--QQV----VESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT-NDFGQ 830 (1075)
Q Consensus 758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~i----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~-N~~G~ 830 (1075)
+.+.+|+++.|.|.. +.|.|.++|||.+ ... ....++... . ..|.|.+++++|+|.|+|.|. |..|.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--~---~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--E---RGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--c---CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 457899999999997 4899999999843 221 123344332 1 359999999999999999998 67777
Q ss_pred EEEEEEEEEE
Q psy16863 831 SITSCFLKLN 840 (1075)
Q Consensus 831 ~~~s~~l~V~ 840 (1075)
....+.|.|.
T Consensus 80 ~~~~~~l~v~ 89 (91)
T cd05871 80 TLAKYTLHVI 89 (91)
T ss_pred EEEEEEEEEe
Confidence 7777777765
No 201
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.84 E-value=3.7e-08 Score=83.26 Aligned_cols=84 Identities=12% Similarity=0.251 Sum_probs=67.4
Q ss_pred eeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeecCCcEEEEEeeC----cEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863 757 SCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILKETL----GVCHLKIHALEVADQAEWKCIATNDFGQS 831 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 831 (1075)
.+.|.+|+.+.|.|.+.+.|.|+ +.|.+++..+.......+..... -.+.|.+..+..+|+|.|+|.|.|..+.+
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45689999999999999999998 99999998775443312222211 35789999999999999999999999888
Q ss_pred EEEEEEEEE
Q psy16863 832 ITSCFLKLN 840 (1075)
Q Consensus 832 ~~s~~l~V~ 840 (1075)
..++.|.|+
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 777777764
No 202
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.83 E-value=6.1e-08 Score=82.92 Aligned_cols=82 Identities=24% Similarity=0.449 Sum_probs=68.2
Q ss_pred eeeeecCCeEEEEEEEecCCCCeEEEEEC-CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863 757 SCQATVNEEFKFTVQVSISPEPKVSWFRD-DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~-g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~ 835 (1075)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++....... ...|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 34577899999999999988899999998 88887666676654433 57899999999999999999999988877666
Q ss_pred EEEE
Q psy16863 836 FLKL 839 (1075)
Q Consensus 836 ~l~V 839 (1075)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5554
No 203
>smart00409 IG Immunoglobulin.
Probab=98.83 E-value=6.1e-08 Score=82.92 Aligned_cols=82 Identities=24% Similarity=0.449 Sum_probs=68.2
Q ss_pred eeeeecCCeEEEEEEEecCCCCeEEEEEC-CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863 757 SCQATVNEEFKFTVQVSISPEPKVSWFRD-DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~-g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~ 835 (1075)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++....... ...|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 34577899999999999988899999998 88887666676654433 57899999999999999999999988877666
Q ss_pred EEEE
Q psy16863 836 FLKL 839 (1075)
Q Consensus 836 ~l~V 839 (1075)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5554
No 204
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.83 E-value=1.5e-08 Score=80.78 Aligned_cols=63 Identities=22% Similarity=0.522 Sum_probs=51.7
Q ss_pred cCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863 762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829 (1075)
Q Consensus 762 ~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G 829 (1075)
+|+++.|.|.+.+.|.+.+.|+|++..+.. ..... .....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS---ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe---cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478999999999999999999999988872 22221 1234799999999999999999999875
No 205
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.83 E-value=7.2e-09 Score=87.53 Aligned_cols=72 Identities=13% Similarity=0.255 Sum_probs=58.4
Q ss_pred cceeeeecCCeEEEEEE-EecCCCCeEEEEECCEE-eecCCcEEEEEeeCcEEEEEEccccCCCCe-EEEEEEEeCCce
Q psy16863 755 LKSCQATVNEEFKFTVQ-VSISPEPKVSWFRDDQQ-VVESDNVKILKETLGVCHLKIHALEVADQA-EWKCIATNDFGQ 830 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~-v~g~p~p~v~W~k~g~~-i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N~~G~ 830 (1075)
++.+.+.+|+++.|.|. ..|.|.|.|.|++++.. +..+.|+.+.. .| .|.|.+++.+|+| .|.|.|+|.+..
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~--~G--nL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ--NG--NLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC--Cc--eEEEEEEehhhCCCCeEEEEEccccc
Confidence 56688999999999997 69999999999988755 44455554432 23 7999999999999 799999998644
No 206
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.80 E-value=1.8e-08 Score=84.61 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=53.0
Q ss_pred ceeeccCCeEEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863 358 DIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
...+.+|++++|.|.+.+ .+...+.|||+|..+... .....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 446899999999999843 556789999999876421 112358999999999999999999998754
No 207
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.80 E-value=1.3e-08 Score=86.29 Aligned_cols=72 Identities=18% Similarity=0.351 Sum_probs=56.8
Q ss_pred CceeeccCCeEEEEEEE-ecCCCcEEEEEECCEec--CCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863 357 HDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKL--EENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l--~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
....+.+|+.+.|.|.. .|.|.+.|.|+|++.++ ..+.+..+.. +|+ |.|.+++.+|+|.|+|.|+|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~---L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGN---LYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCc---EEEeecCHhhCceeEEEEEecccCC
Confidence 45678999999999986 67899999999999764 2333333333 454 8899999999999999999986543
No 208
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.78 E-value=4.1e-08 Score=82.71 Aligned_cols=71 Identities=31% Similarity=0.564 Sum_probs=55.7
Q ss_pred eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEeCCe-eEEEEEEEEE
Q psy16863 856 AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMG-TTSSSAALLG 927 (1075)
Q Consensus 856 ~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G-~~~~~~~l~v 927 (1075)
..+.+|+.++|.|.+.+.|.+.+.|++++..+..+... +++......|+|.|+|.|.|..| ..+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 44778999999999999999999999999999855443 44556667889999999999665 4445555543
No 209
>smart00409 IG Immunoglobulin.
Probab=98.76 E-value=1.3e-07 Score=80.74 Aligned_cols=83 Identities=27% Similarity=0.494 Sum_probs=69.6
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEEC-CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRN-DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~ 435 (1075)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+....++.....+....|.|.++..+|+|.|+|.+.+..+......
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 345678999999999998888899999998 8888766777777766677899999999999999999998887776665
Q ss_pred EEEe
Q psy16863 436 ELSV 439 (1075)
Q Consensus 436 ~l~V 439 (1075)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5554
No 210
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.76 E-value=1.3e-07 Score=80.74 Aligned_cols=83 Identities=27% Similarity=0.494 Sum_probs=69.6
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEEC-CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRN-DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~ 435 (1075)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+....++.....+....|.|.++..+|+|.|+|.+.+..+......
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 345678999999999998888899999998 8888766777777766677899999999999999999998887776665
Q ss_pred EEEe
Q psy16863 436 ELSV 439 (1075)
Q Consensus 436 ~l~V 439 (1075)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5554
No 211
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.75 E-value=7.4e-08 Score=83.87 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=59.7
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEec--------CCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--------EENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l--------~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~ 427 (1075)
+++.+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++.+.. .+....|+|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 5678999999999999988888899998633211 1234555532 334567999999999999999999976
Q ss_pred CCceeeEEEEEe
Q psy16863 428 VGRSHCSCELSV 439 (1075)
Q Consensus 428 ~g~~~~s~~l~V 439 (1075)
.. ...++.|+|
T Consensus 85 ~~-~~~~~~~~v 95 (95)
T cd05717 85 PV-QTAKATVTV 95 (95)
T ss_pred CC-ceEEEEEEC
Confidence 43 344555544
No 212
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.74 E-value=3.2e-08 Score=84.34 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=55.2
Q ss_pred eeeccCCeEEEEEEEecCCCcEEEEEECCEec-C-------------CCCcEEEEE---cCCEEEEEEcccCCCCceeEE
Q psy16863 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL-E-------------ENKIYRTQH---DGNFYFIDLSSVSLFDSGRWT 421 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l-~-------------~~~~~~~~~---~g~~~~L~I~~v~~~d~G~Y~ 421 (1075)
+.+.+|++|+|.|...+.+.+.|.||+++... . ...++.... ++..+.|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45789999999999988889999999877432 1 112222222 334567999999999999999
Q ss_pred EEEEeCCCce
Q psy16863 422 CLAENAVGRS 431 (1075)
Q Consensus 422 C~a~n~~g~~ 431 (1075)
|.+.|..+..
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9999876643
No 213
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.73 E-value=3.8e-08 Score=80.14 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=48.9
Q ss_pred EEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEEee---CcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863 766 FKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKET---LGVCHLKIHALEVADQAEWKCIATNDFGQS 831 (1075)
Q Consensus 766 ~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 831 (1075)
+.|+|... |+|+++|+|||||++|....... ..+ .....|.|.....+|.+.|+|+|.|.++..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~--~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQ--ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccc--cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999977 57999999999999996432100 000 013479999999999999999999998764
No 214
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.71 E-value=2.7e-08 Score=79.42 Aligned_cols=62 Identities=19% Similarity=0.407 Sum_probs=47.3
Q ss_pred CCeEEEEEEE-ecCCCCeEEEEECCEEeecCCcEEEEEeeCcEE-EEEEccccCCCCeEEEEEE
Q psy16863 763 NEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKILKETLGVC-HLKIHALEVADQAEWKCIA 824 (1075)
Q Consensus 763 g~~~~l~C~v-~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~A 824 (1075)
|+++.|.|.+ .+.|.+.++|+|+++.+................ .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 777888999999998665544333322222111 3999999999999999987
No 215
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.70 E-value=6.7e-08 Score=81.74 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=57.5
Q ss_pred CCeEEEEEEEecCC--CcEEEEEECCEecCCC---C--cEEE-EEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863 364 GTRARLLVEIRSPT--EIKIHWYRNDRKLEEN---K--IYRT-QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435 (1075)
Q Consensus 364 G~~v~l~C~~~g~p--~~~v~W~k~g~~l~~~---~--~~~~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~ 435 (1075)
|+++.|.|.+.+.+ ...+.|.+.+..+... . +... ......+.|.|.+++.+|+|.|+|.|+|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999998754 5688999988644211 1 1111 1123456899999999999999999999988888888
Q ss_pred EEEee
Q psy16863 436 ELSVL 440 (1075)
Q Consensus 436 ~l~V~ 440 (1075)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77774
No 216
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.70 E-value=8.4e-08 Score=79.43 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=60.5
Q ss_pred ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~ 835 (1075)
++.++..|+++.|.|...+ +.+.+.|+++|.++..+.++..... -|.|.+++.+|+|.|.|.|. +.|-...-+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~-----GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~ 76 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTD-----GLLILVTSPEHSGTYRCYSE-EEGFQQLVA 76 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCC-----CCEEEECCHhhCEEEEEEEe-cCCCeEEEE
Confidence 4577999999999999995 5779999999999987766655432 28899999999999999987 345544444
Q ss_pred EEEEE
Q psy16863 836 FLKLN 840 (1075)
Q Consensus 836 ~l~V~ 840 (1075)
.+.+.
T Consensus 77 ~y~l~ 81 (85)
T cd05872 77 SYSLN 81 (85)
T ss_pred EEEEE
Confidence 44443
No 217
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.70 E-value=2.3e-07 Score=78.94 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=57.9
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEec--------CCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--------EENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l--------~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~ 427 (1075)
+++.+.+|++++|.|.+.+.....+.|++-|..+ ..+.|+.... ++..+.|+|.+++.+|+|.|.|++...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 5678999999999999988767788898766432 2456776665 577889999999999999999999753
No 218
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.69 E-value=1.7e-07 Score=79.33 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=67.2
Q ss_pred CceeeccCCeEEEEEEEecCCCcE-EEEEECCEecCCCCcEEEEEc--C---CEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIK-IHWYRNDRKLEENKIYRTQHD--G---NFYFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~~~~~--g---~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
..+.|.+|+.+.|.|.+.+.|+|+ +.|.+++..+........... + -.+.|.+.++..+|+|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456899999999999999999997 999999987754433122221 1 2368999999999999999999999888
Q ss_pred eeeEEEEEee
Q psy16863 431 SHCSCELSVL 440 (1075)
Q Consensus 431 ~~~s~~l~V~ 440 (1075)
.+.++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8877777764
No 219
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.69 E-value=2.1e-07 Score=79.12 Aligned_cols=72 Identities=8% Similarity=0.223 Sum_probs=58.2
Q ss_pred ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEe--------ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV--------VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~ 827 (1075)
+++++.+|+++.|+|.+.+.....+.|++-+..+ ..+.|+.....+....+|.|.+++.+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4677999999999999998877778888766432 25667877654456789999999999999999999753
No 220
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.68 E-value=5.7e-08 Score=77.32 Aligned_cols=63 Identities=32% Similarity=0.487 Sum_probs=50.7
Q ss_pred cCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429 (1075)
Q Consensus 363 ~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g 429 (1075)
+|+++.|.|.+.+.+.+.+.|+|++..+.. ..... .....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999988888899999999988872 22222 2233689999999999999999998765
No 221
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.67 E-value=8.2e-08 Score=76.59 Aligned_cols=61 Identities=23% Similarity=0.451 Sum_probs=49.5
Q ss_pred CCeEEEEEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCCEE--EEEEcccCCCCceeEEEEE
Q psy16863 364 GTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY--FIDLSSVSLFDSGRWTCLA 424 (1075)
Q Consensus 364 G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~--~L~I~~v~~~d~G~Y~C~a 424 (1075)
|+.++|.|.+ .+.+...+.|+|++..+...........+... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 77888999999999877655544444444332 3999999999999999986
No 222
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.66 E-value=1.3e-07 Score=79.70 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=48.4
Q ss_pred eEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863 765 EFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQS 831 (1075)
Q Consensus 765 ~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 831 (1075)
++.|+|.+.| .|.+.|+|+|+|+++............++ .+.|.|.....+|.|.|+|.|.|.....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 3689999997 68899999999998864321111111111 3468888888899999999999986543
No 223
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.63 E-value=1.8e-07 Score=79.93 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=54.8
Q ss_pred ceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec----CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe-CCCc
Q psy16863 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL----EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN-AVGR 430 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l----~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n-~~g~ 430 (1075)
.+.+.+|+++.|.|.. +.|.+.+.|||.+ ... ....++... + ..|.|.++..+|+|.|+|.|.| ..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~---~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-E---RGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-c---CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 3467899999999996 5788999999843 221 122343332 2 2388999999999999999984 5555
Q ss_pred eeeEEEEEee
Q psy16863 431 SHCSCELSVL 440 (1075)
Q Consensus 431 ~~~s~~l~V~ 440 (1075)
......|.|.
T Consensus 80 ~~~~~~l~v~ 89 (91)
T cd05871 80 TLAKYTLHVI 89 (91)
T ss_pred EEEEEEEEEe
Confidence 5555555553
No 224
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.60 E-value=2.2e-07 Score=78.81 Aligned_cols=79 Identities=24% Similarity=0.359 Sum_probs=58.5
Q ss_pred eeeccCCeEEEEEEEe-----------cCCCcEEEEEECCEecCCCCc-----EEEEEcCCEEEEEEcccCCCCceeEEE
Q psy16863 359 IAVKVGTRARLLVEIR-----------SPTEIKIHWYRNDRKLEENKI-----YRTQHDGNFYFIDLSSVSLFDSGRWTC 422 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~-----------g~p~~~v~W~k~g~~l~~~~~-----~~~~~~g~~~~L~I~~v~~~d~G~Y~C 422 (1075)
..+.+|+++.|.|... ......+.|||++..+..... .++...+. .|.|.++..+|+|.|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence 5678999999999961 122458999999865544331 23444444 48899999999999999
Q ss_pred EEEeCCCceeeEEEEEe
Q psy16863 423 LAENAVGRSHCSCELSV 439 (1075)
Q Consensus 423 ~a~n~~g~~~~s~~l~V 439 (1075)
++.|.......+..|+|
T Consensus 88 ~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 88 VLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EECCCCcceEEEEEEEC
Confidence 99998877776666654
No 225
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.60 E-value=1.5e-07 Score=76.61 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=48.9
Q ss_pred EEEEEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCC----EEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863 367 ARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGN----FYFIDLSSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 367 v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~----~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
+.|.|.. .|+|++.|+|||||++|..... ...++. ...|.|.....+|.+.|+|+|.|.++..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS--QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc--cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6899998 5689999999999999965321 112222 2368898889999999999999998764
No 226
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.59 E-value=1.6e-07 Score=79.42 Aligned_cols=72 Identities=19% Similarity=0.373 Sum_probs=58.1
Q ss_pred ccceEeecCCeEEEEEE-EecCCCCceEEEEeCCeE-EecCCcEEEEEcCCceEEEEEeeeeecCCc-eEEEEEECCCCc
Q psy16863 557 VENVKAKIGTSAILECQ-VLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEINYLEAVDDG-EWKCVATSSSGV 633 (1075)
Q Consensus 557 ~~~~~v~~G~~~~L~C~-~~~~p~p~~v~W~~~~~~-i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~ 633 (1075)
.+.+.+.+|+.+.|.|. ..|.|.| .|.|++++.. +..+.++.+..+| .|.|.+++..|+| .|.|.|.|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~~~~Ri~~~~~G----nL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHITQDERVSMGQNG----NLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCccccccccEEECCCc----eEEEEEEehhhCCCCeEEEEEccccc
Confidence 46788999999999997 5888888 8999987655 3344555554444 8999999999999 799999998644
No 227
>PHA03376 BARF1; Provisional
Probab=98.59 E-value=7e-07 Score=82.24 Aligned_cols=124 Identities=18% Similarity=0.371 Sum_probs=79.0
Q ss_pred ceeeccCCeEEEEEEEe---cCCCcEEEEEECCE----ec-------------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863 358 DIAVKVGTRARLLVEIR---SPTEIKIHWYRNDR----KL-------------EENKIYRTQHDGNFYFIDLSSVSLFDS 417 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~---g~p~~~v~W~k~g~----~l-------------~~~~~~~~~~~g~~~~L~I~~v~~~d~ 417 (1075)
.+.+..|+.+.|.|... ..+...|.|+|.+. .+ +...++.+..+.+...|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 45677899999999974 23567999999431 11 112334454556677899999999999
Q ss_pred eeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCE
Q psy16863 418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNK 485 (1075)
Q Consensus 418 G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~ 485 (1075)
|+|+|...-........-.|++..|-.. .+..+. .....-+..++.|.+.|+|.|.+.|.-+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~L---sv~a~~-~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTL---SVHSER-SQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceE---EEEecc-ccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9999999865433333333333221100 111110 112224567899998889999999987543
No 228
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.57 E-value=2.3e-07 Score=78.85 Aligned_cols=72 Identities=21% Similarity=0.388 Sum_probs=53.7
Q ss_pred eeeccCCeEEEEEEE-e----cCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863 359 IAVKVGTRARLLVEI-R----SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~-~----g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
+.+.+|.+..|.|.- . ..+.+.|+||||+.+|....+......+. ..|.|.++..+|+|.|+|+|.+..|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~-~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGS-TYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCC-CEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 456788999999972 2 34577999999999987544322222222 249999999999999999999987654
No 229
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.57 E-value=2.8e-07 Score=76.30 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=62.0
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 436 (1075)
....+.+|+++.|.|...+. .+.+.|+++|..+..+.++....+| |.|..+..+|+|.|.|.+. ..|-...-+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~ 77 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVAS 77 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence 45688999999999999665 6799999999999887777777666 5689999999999999987 3355554444
Q ss_pred EEee
Q psy16863 437 LSVL 440 (1075)
Q Consensus 437 l~V~ 440 (1075)
+.+.
T Consensus 78 y~l~ 81 (85)
T cd05872 78 YSLN 81 (85)
T ss_pred EEEE
Confidence 4443
No 230
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.56 E-value=3.6e-07 Score=77.49 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=56.9
Q ss_pred eeeeecCCeEEEEEEEe-----------cCCCCeEEEEECCEEeecCCc-----EEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863 757 SCQATVNEEFKFTVQVS-----------ISPEPKVSWFRDDQQVVESDN-----VKILKETLGVCHLKIHALEVADQAEW 820 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~-----------g~p~p~v~W~k~g~~i~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y 820 (1075)
...+.+|+++.|.|... ..+...++|||++..+..... .++...+ ..|.|.++..+|+|.|
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~---~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE---DSIWFRPAELQDSGLY 85 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC---CEEEEEeCChhhCeEE
Confidence 35688999999999971 122348999999865554331 1222222 2799999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy16863 821 KCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 821 ~C~A~N~~G~~~~s~~l~V 839 (1075)
+|++.|.-.-...++.|+|
T Consensus 86 ~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 86 TCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEECCCCcceEEEEEEEC
Confidence 9999998766655555543
No 231
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.49 E-value=1e-06 Score=74.26 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=51.5
Q ss_pred eEEEEEEEec-CCCcEEEEEECCEecCCCCcE-EEEEcCC----EEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 366 RARLLVEIRS-PTEIKIHWYRNDRKLEENKIY-RTQHDGN----FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 366 ~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~-~~~~~g~----~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
++.|.|.+.| .|.+.|+|+|+|+++...... ....+|. ...|.|.....+|.|.|+|.|.|..........++
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999977 688899999999988654321 1223333 24678888777888999999999875544333333
No 232
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.41 E-value=7.9e-07 Score=76.36 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=52.3
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~ 427 (1075)
+...|.+|++|+|.|... .+...+.|+|+|...... .....+....|.|.+++.+|+|.|+|...|.
T Consensus 9 p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 9 PSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 355789999999999884 567799999999754321 1123445567899999999999999999886
No 233
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.40 E-value=5.6e-07 Score=74.57 Aligned_cols=73 Identities=21% Similarity=0.401 Sum_probs=48.0
Q ss_pred CeEEeccceeeeecCCeEEEEEEEecCC-CCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863 749 PKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826 (1075)
Q Consensus 749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N 826 (1075)
|.+...........+. +.|+|.+.+.| .+.++|+ +......... .........|.|.++..+|.|.|+|.|+|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~---~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNS---RGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEE---EEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeee---eeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 4444444443333333 99999999988 8899999 2211111111 11122355899999999999999999998
No 234
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.39 E-value=3.6e-06 Score=74.12 Aligned_cols=86 Identities=21% Similarity=0.348 Sum_probs=57.7
Q ss_pred CCeEEEEEEecCC---CeeEEEEc-cCCCeeEEEeeCCCcee------ccCcEEEEe---cCCeEEEEEceeccCCCeEE
Q psy16863 150 GTRARLLVEIRSP---TEIKCQFD-LNNTIPFSFRAQGDHPI------FGNRFRAIN---RDGRTELNIRRVRRDDGGRY 216 (1075)
Q Consensus 150 G~~~~l~c~~~~~---~~~~c~~~-~~~~~~~~W~~~~~~~~------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y 216 (1075)
|++++|.|...+. ..+...|. ..+...+.|++++.... ..+|+.+.. ..+...|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 6789999998633 22344443 22334566666553222 224555432 24567999999999999999
Q ss_pred EEEEEcCceeEEEEEEEee
Q psy16863 217 SVTASNESGYSTAKFELSV 235 (1075)
Q Consensus 217 ~C~a~n~~g~~~~~~~l~V 235 (1075)
+|.+.|..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887777777765
No 235
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.38 E-value=1.5e-06 Score=78.17 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=57.0
Q ss_pred cceeeeecCCeEEEEEEEecCCCCeEEEEECCE---Ee-----------ecCCcEEEEEe-eCcEEEEEEccccCCCCeE
Q psy16863 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ---QV-----------VESDNVKILKE-TLGVCHLKIHALEVADQAE 819 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~---~i-----------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~ 819 (1075)
+....+.+|++++|.|.+.+.+...+.|||... +. ...+++.+... ..+.+.|.|.+++.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 345668999999999999988888999998531 11 12345655432 2467899999999999999
Q ss_pred EEEEEEeCCc
Q psy16863 820 WKCIATNDFG 829 (1075)
Q Consensus 820 Y~C~A~N~~G 829 (1075)
|.|.+.+..+
T Consensus 85 Y~C~~~~~~~ 94 (109)
T cd04983 85 YFCALSESGG 94 (109)
T ss_pred EEEEEecCCC
Confidence 9999997643
No 236
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.38 E-value=2.9e-06 Score=75.70 Aligned_cols=79 Identities=14% Similarity=0.258 Sum_probs=56.9
Q ss_pred cCCeEEEEEEEecCC------CCeEEEEECCE------E-e-ec----------CCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863 762 VNEEFKFTVQVSISP------EPKVSWFRDDQ------Q-V-VE----------SDNVKILKETLGVCHLKIHALEVADQ 817 (1075)
Q Consensus 762 ~g~~~~l~C~v~g~p------~p~v~W~k~g~------~-i-~~----------~~~~~~~~~~~~~~~L~I~~~~~~D~ 817 (1075)
.|++++|.|.....| ...|.|+|... . + .. ..|+.+.....+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 388999999988653 35799999641 1 1 10 12344332223456899999999999
Q ss_pred eEEEEEEEeCCceEEEEEEEEEE
Q psy16863 818 AEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 818 G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
|.|.|.+.|..|.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988888777777765
No 237
>PHA03376 BARF1; Provisional
Probab=98.34 E-value=3.6e-05 Score=71.29 Aligned_cols=133 Identities=13% Similarity=0.059 Sum_probs=75.3
Q ss_pred cceeeccceeEEEEEecCC---CceEEEEecC---CCeeeEEecCCCccc-c----CCCeEEEeeCCeEEEEEcccCCCC
Q psy16863 251 DIAVKVGTRARLLVEIRSP---TEIKCQFDLN---NTIPFSFRAQGDHPI-F----GNRFRAINRDGRTELNIRRVRRDD 319 (1075)
Q Consensus 251 ~~~v~~g~~~~l~c~~~~~---~~~~c~~~~~---~~~~~~w~~~~~~~~-~----~~~~~~~~~~~~~~L~I~~~~~~d 319 (1075)
.+.+..|+.+.|.|..++. ..+...|... .+..+..+ .++... . ..++.+..+.++.+|.|.+++.+|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~-~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGR-MHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEE-cCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence 3456789999999988732 2233333321 11122221 222211 1 223445556788899999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCE
Q psy16863 320 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR 388 (1075)
Q Consensus 320 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~ 388 (1075)
.|+|+|...-........-.|++.. |..+...........-+..++.|...|.|.|.++|.-+..
T Consensus 99 dGtY~C~fQkge~~~~k~ehLt~V~----~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 99 DGNYLCRMKLGETEVTKQEHLSVVK----PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred CceEEEEEEcCCCceeeeeeeeeee----cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9999999976433222222222221 1111111111122225567899998889999999997653
No 238
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.34 E-value=4.4e-06 Score=74.57 Aligned_cols=82 Identities=15% Similarity=0.272 Sum_probs=55.8
Q ss_pred ceeeeecCCeEEEEEEEecC----CCCeEEE---------------EECCEEeec-C----CcEEEEEe-eCcEEEEEEc
Q psy16863 756 KSCQATVNEEFKFTVQVSIS----PEPKVSW---------------FRDDQQVVE-S----DNVKILKE-TLGVCHLKIH 810 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~----p~p~v~W---------------~k~g~~i~~-~----~~~~~~~~-~~~~~~L~I~ 810 (1075)
....+..|+.++|.|..... +...|+| |++|+.... . +|+.+..+ ..+..+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 34568899999999999763 3458999 334444321 1 24443322 2346789999
Q ss_pred cccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863 811 ALEVADQAEWKCIATNDFGQSITSCFL 837 (1075)
Q Consensus 811 ~~~~~D~G~Y~C~A~N~~G~~~~s~~l 837 (1075)
+++.+|.|.|+|.+.|.-+.......+
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~ 112 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVGKSSQV 112 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCCceeEE
Confidence 999999999999999986643333333
No 239
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.33 E-value=1.8e-06 Score=77.52 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=54.6
Q ss_pred cceeeeecCCeEEEEEEEecCCCCeEEEEECCE--Eee----------------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ--QVV----------------ESDNVKILKETLGVCHLKIHALEVAD 816 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~--~i~----------------~~~~~~~~~~~~~~~~L~I~~~~~~D 816 (1075)
+....+.+|++++|.|.+.+ +.+.+.|||... .+. ...++.........++|.|.+++.+|
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 34466899999999999987 778999999531 110 12345544333356899999999999
Q ss_pred CeEEEEEEEeCC
Q psy16863 817 QAEWKCIATNDF 828 (1075)
Q Consensus 817 ~G~Y~C~A~N~~ 828 (1075)
+|.|.|.+.+..
T Consensus 84 sg~Y~Ca~~~~~ 95 (110)
T cd05899 84 SAVYLCASSLGG 95 (110)
T ss_pred CEEEEEEeeCCC
Confidence 999999998754
No 240
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.32 E-value=4.1e-06 Score=74.65 Aligned_cols=80 Identities=14% Similarity=0.360 Sum_probs=56.8
Q ss_pred cCCeEEEEEEEecCC------CCeEEEEECC-----E-Eee--cCCc------E--EEE--EeeCcEEEEEEccccCCCC
Q psy16863 762 VNEEFKFTVQVSISP------EPKVSWFRDD-----Q-QVV--ESDN------V--KIL--KETLGVCHLKIHALEVADQ 817 (1075)
Q Consensus 762 ~g~~~~l~C~v~g~p------~p~v~W~k~g-----~-~i~--~~~~------~--~~~--~~~~~~~~L~I~~~~~~D~ 817 (1075)
.|++++|.|.....+ .+.|.|+|.. . .+. .+.. + ++. ....+..+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 388999999988654 4699999962 1 111 1111 1 111 1123567899999999999
Q ss_pred eEEEEEEEeCCceEEEEEEEEEEe
Q psy16863 818 AEWKCIATNDFGQSITSCFLKLNV 841 (1075)
Q Consensus 818 G~Y~C~A~N~~G~~~~s~~l~V~~ 841 (1075)
|.|.|.+.|..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888777777777753
No 241
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.30 E-value=4.5e-06 Score=73.54 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=51.5
Q ss_pred CCeEEEEEEEecCC---CCeEEEEECCE--Eee--c-------------CCcEEEEEe--eCcEEEEEEccccCCCCeEE
Q psy16863 763 NEEFKFTVQVSISP---EPKVSWFRDDQ--QVV--E-------------SDNVKILKE--TLGVCHLKIHALEVADQAEW 820 (1075)
Q Consensus 763 g~~~~l~C~v~g~p---~p~v~W~k~g~--~i~--~-------------~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y 820 (1075)
|+++.|.|...... ...+.|+|... .+. . ..|+.+... ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 67899999986332 23688888541 110 0 023333221 23457899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy16863 821 KCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 821 ~C~A~N~~G~~~~s~~l~V 839 (1075)
+|.+.|..+.....+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998777666665554
No 242
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.30 E-value=3.5e-06 Score=75.70 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=56.7
Q ss_pred ecCceeeccCCeEEEEEEEecCCCcEEEEEECCE---ec-----------CCCCcEEEEEc--CCEEEEEEcccCCCCce
Q psy16863 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR---KL-----------EENKIYRTQHD--GNFYFIDLSSVSLFDSG 418 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~---~l-----------~~~~~~~~~~~--g~~~~L~I~~v~~~d~G 418 (1075)
.+..+.+.+|++++|.|.+.+.+...+.|||... +. ....++.+..+ ...+.|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 4456789999999999999877788999998532 10 12345555433 36778999999999999
Q ss_pred eEEEEEEeCC
Q psy16863 419 RWTCLAENAV 428 (1075)
Q Consensus 419 ~Y~C~a~n~~ 428 (1075)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998764
No 243
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.27 E-value=5.2e-06 Score=67.92 Aligned_cols=75 Identities=12% Similarity=0.275 Sum_probs=52.2
Q ss_pred EEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEee--CcEEEEEEccccCCCCeEEEEEEEeCCce-EEEEEEEEEE
Q psy16863 766 FKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKET--LGVCHLKIHALEVADQAEWKCIATNDFGQ-SITSCFLKLN 840 (1075)
Q Consensus 766 ~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~s~~l~V~ 840 (1075)
+.|.|.+.| .|.+.|+|||+|+++............ ...+.|.|..-..+|...|+|.|.|..=. ...+..|.|+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 679999886 689999999999999754321111111 12457899888899999999999997532 3344555554
No 244
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.25 E-value=3.4e-06 Score=75.25 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=54.0
Q ss_pred eeecCCeEEEEEEEecC-CCCeEEEEECCE-----Eee------------cCCcEEEEEeeC-cEEEEEEccccCCCCeE
Q psy16863 759 QATVNEEFKFTVQVSIS-PEPKVSWFRDDQ-----QVV------------ESDNVKILKETL-GVCHLKIHALEVADQAE 819 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~-p~p~v~W~k~g~-----~i~------------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~ 819 (1075)
.+..|++++|.|.+.+. +...+.|+|... .+. ...++.+..... +.++|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999976 677999998532 111 123455444332 57899999999999999
Q ss_pred EEEEEEeCCc
Q psy16863 820 WKCIATNDFG 829 (1075)
Q Consensus 820 Y~C~A~N~~G 829 (1075)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 245
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.25 E-value=3e-06 Score=72.77 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=55.1
Q ss_pred CCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc------CCCEEEEEeCCCCCCCcEEEEEEEEec
Q psy16863 447 APFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------AGDIFALTANPKDPSSLGTYTCEAVNC 515 (1075)
Q Consensus 447 ~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 515 (1075)
.|.+...+..++..|++|+|.|... .+...+.|+|+|.... .+....+.+..+..+|+|.|+|...|.
T Consensus 2 kP~L~a~p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCCCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3566666677789999999999885 5777999999988643 233457899999999999999999885
No 246
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.22 E-value=5.3e-06 Score=74.46 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=54.7
Q ss_pred ecCceeeccCCeEEEEEEEecCCCcEEEEEECCE--ec-------------C---CCCcEEEEEcC-CEEEEEEcccCCC
Q psy16863 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR--KL-------------E---ENKIYRTQHDG-NFYFIDLSSVSLF 415 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~--~l-------------~---~~~~~~~~~~g-~~~~L~I~~v~~~ 415 (1075)
.+..+.+.+|++++|.|.+.+ +...+.|||... .+ . ...++...... ..+.|.|.+++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 456678999999999999977 678999999532 11 0 12344444333 5678999999999
Q ss_pred CceeEEEEEEeCC
Q psy16863 416 DSGRWTCLAENAV 428 (1075)
Q Consensus 416 d~G~Y~C~a~n~~ 428 (1075)
|+|.|.|.+.+..
T Consensus 83 Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 83 DSAVYLCASSLGG 95 (110)
T ss_pred hCEEEEEEeeCCC
Confidence 9999999998753
No 247
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.20 E-value=1.5e-05 Score=71.15 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=52.7
Q ss_pred cCceeeccCCeEEEEEEEecC----CCcEEEEE---------------ECCEecCC-C----CcEEEEEc--CCEEEEEE
Q psy16863 356 LHDIAVKVGTRARLLVEIRSP----TEIKIHWY---------------RNDRKLEE-N----KIYRTQHD--GNFYFIDL 409 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g~----p~~~v~W~---------------k~g~~l~~-~----~~~~~~~~--g~~~~L~I 409 (1075)
+..+.+..|+.++|.|.+... +...|+|. ++|..... . .|+.+..+ .....|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 355678899999999999653 34699993 34443321 1 24433321 23357899
Q ss_pred cccCCCCceeEEEEEEeCCCce
Q psy16863 410 SSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 410 ~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
.+++.+|+|.|+|.+.|..+..
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcC
Confidence 9999999999999999987644
No 248
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.20 E-value=2.7e-06 Score=70.36 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=48.3
Q ss_pred CeeeeecCceeeccCCeEEEEEEEecCC-CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863 350 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426 (1075)
Q Consensus 350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n 426 (1075)
|.+...+.......+. ++|.|.+.+.+ .+.++|+ +...... ............|.|.++..+|.|.|+|.|+|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5555554444444444 99999998876 8899999 1111111 11122233345799999999999999999987
No 249
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.19 E-value=9.4e-06 Score=71.87 Aligned_cols=79 Identities=13% Similarity=0.269 Sum_probs=54.4
Q ss_pred cCCeEEEEEEEecCC------------CCeEEEEEC--CE---Eee-c------C----CcEEEEEe--eCcEEEEEEcc
Q psy16863 762 VNEEFKFTVQVSISP------------EPKVSWFRD--DQ---QVV-E------S----DNVKILKE--TLGVCHLKIHA 811 (1075)
Q Consensus 762 ~g~~~~l~C~v~g~p------------~p~v~W~k~--g~---~i~-~------~----~~~~~~~~--~~~~~~L~I~~ 811 (1075)
.|++++|.|.....+ .+.|.|+|- |+ .+. . . +|+.+... ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 488999999987543 469999984 21 111 1 0 24444321 33567999999
Q ss_pred ccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 812 LEVADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 812 ~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
++.+|+|.|.|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999876666555555554
No 250
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.19 E-value=9.6e-06 Score=70.86 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=49.9
Q ss_pred CceeeccCCeEEEEEEEecCCCcEEEEEECCE-----ec----C----------CCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR-----KL----E----------ENKIYRTQHDGNFYFIDLSSVSLFDS 417 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~-----~l----~----------~~~~~~~~~~g~~~~L~I~~v~~~d~ 417 (1075)
.+..+.+|+++.|.|.....+...++|||+.. .+ . -+.|..+..+| .|.|.+++.+|+
T Consensus 6 ~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~ 82 (105)
T cd05774 6 VPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDT 82 (105)
T ss_pred cCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccC
Confidence 34567899999999976434455999999632 11 0 12333444444 488999999999
Q ss_pred eeEEEEEEeCCC
Q psy16863 418 GRWTCLAENAVG 429 (1075)
Q Consensus 418 G~Y~C~a~n~~g 429 (1075)
|.|+|.+.+...
T Consensus 83 G~Y~~~v~~~~~ 94 (105)
T cd05774 83 GFYTLQTITTNF 94 (105)
T ss_pred EEEEEEEEeCCc
Confidence 999999998763
No 251
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.18 E-value=1.4e-05 Score=65.43 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=49.2
Q ss_pred EEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEE-cC--CEEEEEEcccCCCCceeEEEEEEeCCCc-eeeEEEEEee
Q psy16863 367 ARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQH-DG--NFYFIDLSSVSLFDSGRWTCLAENAVGR-SHCSCELSVL 440 (1075)
Q Consensus 367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~-~g--~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-~~~s~~l~V~ 440 (1075)
+.|.|.+.| .|++.|+|||+|.++.......... .+ ..++|.|..-..+|...|+|+|.|.+-. ...+..|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999854 7899999999999997653322222 22 3457777655555555999999997632 2344455543
No 252
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.17 E-value=8.1e-06 Score=71.32 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=50.3
Q ss_pred eeecCCeEEEEEEEecCCCCeEEEEECCE-----Eee---c-----------CCcEEEEEeeCcEEEEEEccccCCCCeE
Q psy16863 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQ-----QVV---E-----------SDNVKILKETLGVCHLKIHALEVADQAE 819 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~-----~i~---~-----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 819 (1075)
.+.+|+++.|.|...-.+...++|||+.. .|. . +.|..+.. + .+|.|.+++.+|+|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~--n--gSL~I~~v~~~D~G~ 84 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP--N--GSLLIQNVTQKDTGF 84 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC--C--CcEEEecCCcccCEE
Confidence 47799999999875433344999999632 221 1 12333322 2 279999999999999
Q ss_pred EEEEEEeCCc-eEEEEEEE
Q psy16863 820 WKCIATNDFG-QSITSCFL 837 (1075)
Q Consensus 820 Y~C~A~N~~G-~~~~s~~l 837 (1075)
|+|.+.|..+ .......|
T Consensus 85 Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 85 YTLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEEeCCccEEEEEEEE
Confidence 9999999763 33334433
No 253
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.17 E-value=1e-05 Score=71.05 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=51.8
Q ss_pred CeEEEEEEEecCC---CCeEEEEECCEE----e-----------ec--CCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863 764 EEFKFTVQVSISP---EPKVSWFRDDQQ----V-----------VE--SDNVKILKETLGVCHLKIHALEVADQAEWKCI 823 (1075)
Q Consensus 764 ~~~~l~C~v~g~p---~p~v~W~k~g~~----i-----------~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 823 (1075)
++++|.|.....+ ...|.|+|.... + .. ..+..+.....+...|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999998754 447999996421 1 01 11222221112457899999999999999999
Q ss_pred EEe-CCceEEEEEEEEE
Q psy16863 824 ATN-DFGQSITSCFLKL 839 (1075)
Q Consensus 824 A~N-~~G~~~~s~~l~V 839 (1075)
+.+ ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6677777776665
No 254
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.14 E-value=9.8e-06 Score=72.27 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=53.2
Q ss_pred eeccCCeEEEEEEEecC-CCcEEEEEECCE-----ec------------CCCCcEEEEEcC--CEEEEEEcccCCCCcee
Q psy16863 360 AVKVGTRARLLVEIRSP-TEIKIHWYRNDR-----KL------------EENKIYRTQHDG--NFYFIDLSSVSLFDSGR 419 (1075)
Q Consensus 360 ~v~~G~~v~l~C~~~g~-p~~~v~W~k~g~-----~l------------~~~~~~~~~~~g--~~~~L~I~~v~~~d~G~ 419 (1075)
.+.+|++++|.|.+.+. +...+.|||... .+ ....++.+..+. ....|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999876 678999999542 11 112345444443 56789999999999999
Q ss_pred EEEEEEeCCC
Q psy16863 420 WTCLAENAVG 429 (1075)
Q Consensus 420 Y~C~a~n~~g 429 (1075)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999988754
No 255
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.14 E-value=1.1e-05 Score=71.90 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=54.8
Q ss_pred eecCceeeccCCeEEEEEEEecCC-CcEEEEEECC--Ee---cC---------CCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863 354 RRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRND--RK---LE---------ENKIYRTQHDGNFYFIDLSSVSLFDSG 418 (1075)
Q Consensus 354 ~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k~g--~~---l~---------~~~~~~~~~~g~~~~L~I~~v~~~d~G 418 (1075)
..+..+.+.+|++++|.|.+.+.. ...+.|||.. .. |. ...++.....+....|.|.++..+|+|
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg 84 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAA 84 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCE
Confidence 345667889999999999996654 5789999843 11 10 113555555556678999999999999
Q ss_pred eEEEEEEeC
Q psy16863 419 RWTCLAENA 427 (1075)
Q Consensus 419 ~Y~C~a~n~ 427 (1075)
.|.|.+.+.
T Consensus 85 ~Y~Ca~~~~ 93 (106)
T cd04980 85 VYYCQQYGT 93 (106)
T ss_pred EEEEEEeCC
Confidence 999998653
No 256
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.13 E-value=1.7e-05 Score=70.25 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=51.8
Q ss_pred cCCeEEEEEEEecCC------------CcEEEEEEC--CEe---c---------CC--CCcEEEEE---cCCEEEEEEcc
Q psy16863 363 VGTRARLLVEIRSPT------------EIKIHWYRN--DRK---L---------EE--NKIYRTQH---DGNFYFIDLSS 411 (1075)
Q Consensus 363 ~G~~v~l~C~~~g~p------------~~~v~W~k~--g~~---l---------~~--~~~~~~~~---~g~~~~L~I~~ 411 (1075)
.|++++|.|...... .+.|.|+|- |.+ + .+ ..|+.+.. ......|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 469999984 211 1 00 12444433 22446799999
Q ss_pred cCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 412 VSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 412 v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
++.+|+|.|.|.+.+..........|.|
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEE
Confidence 9999999999999976555555555544
No 257
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.12 E-value=1.8e-05 Score=71.24 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=50.4
Q ss_pred cCceeeccCCeEEEEEEEecCC----CcEEEEEEC----CEe--c---C------CCC----cEEEEE--cCCEEEEEEc
Q psy16863 356 LHDIAVKVGTRARLLVEIRSPT----EIKIHWYRN----DRK--L---E------ENK----IYRTQH--DGNFYFIDLS 410 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~----g~~--l---~------~~~----~~~~~~--~g~~~~L~I~ 410 (1075)
+..+.+.+|++++|.|.....+ ...|.||+. +.+ + . ... |+.+.. ......|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4567889999999999986433 247999852 211 1 0 111 222111 1234569999
Q ss_pred ccCCCCceeEEEEEEeCCCc
Q psy16863 411 SVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 411 ~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
+++.+|+|.|+|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999987654
No 258
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.11 E-value=1.9e-05 Score=70.31 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=54.6
Q ss_pred cCCeEEEEEEEecCC------CcEEEEEECCE----e---c-CC----------CCcEEEEEc-CCEEEEEEcccCCCCc
Q psy16863 363 VGTRARLLVEIRSPT------EIKIHWYRNDR----K---L-EE----------NKIYRTQHD-GNFYFIDLSSVSLFDS 417 (1075)
Q Consensus 363 ~G~~v~l~C~~~g~p------~~~v~W~k~g~----~---l-~~----------~~~~~~~~~-g~~~~L~I~~v~~~d~ 417 (1075)
.|++++|.|.+...| ...|.|+|... . + .. ..|+.+... .....|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999986652 45899999641 0 1 10 123333221 2345799999999999
Q ss_pred eeEEEEEEeCCCceeeEEEEEee
Q psy16863 418 GRWTCLAENAVGRSHCSCELSVL 440 (1075)
Q Consensus 418 G~Y~C~a~n~~g~~~~s~~l~V~ 440 (1075)
|.|.|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988877767666664
No 259
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.11 E-value=2.4e-05 Score=69.65 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=53.9
Q ss_pred cCCeEEEEEEEecCC------CcEEEEEECC-----E-ec--CCCCc--------EEEE---EcCCEEEEEEcccCCCCc
Q psy16863 363 VGTRARLLVEIRSPT------EIKIHWYRND-----R-KL--EENKI--------YRTQ---HDGNFYFIDLSSVSLFDS 417 (1075)
Q Consensus 363 ~G~~v~l~C~~~g~p------~~~v~W~k~g-----~-~l--~~~~~--------~~~~---~~g~~~~L~I~~v~~~d~ 417 (1075)
.|++++|.|.....+ ...|.|+|.. . .+ ..+.. .+.. .......|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987643 5699999962 1 11 01111 1111 123446799999999999
Q ss_pred eeEEEEEEeCCCceeeEEEEEee
Q psy16863 418 GRWTCLAENAVGRSHCSCELSVL 440 (1075)
Q Consensus 418 G~Y~C~a~n~~g~~~~s~~l~V~ 440 (1075)
|.|.|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999887766667666664
No 260
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.10 E-value=2.3e-05 Score=68.79 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=51.1
Q ss_pred CeEEEEEEEecCC---CcEEEEEECCEe----c-----------CC--CCcEEEEEcC-CEEEEEEcccCCCCceeEEEE
Q psy16863 365 TRARLLVEIRSPT---EIKIHWYRNDRK----L-----------EE--NKIYRTQHDG-NFYFIDLSSVSLFDSGRWTCL 423 (1075)
Q Consensus 365 ~~v~l~C~~~g~p---~~~v~W~k~g~~----l-----------~~--~~~~~~~~~g-~~~~L~I~~v~~~d~G~Y~C~ 423 (1075)
++|+|.|.....+ ...|.|+|.... + .+ ..|..+..+. ....|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999997654 458999996531 0 11 1122222111 345799999999999999999
Q ss_pred EEe-CCCceeeEEEEEe
Q psy16863 424 AEN-AVGRSHCSCELSV 439 (1075)
Q Consensus 424 a~n-~~g~~~~s~~l~V 439 (1075)
+.+ ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5677777777766
No 261
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.09 E-value=2.1e-05 Score=65.86 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=45.0
Q ss_pred EEEEEEEecC-CCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 766 FKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 766 ~~l~C~v~g~-p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
+.|.|.+.+. |.+.|+|+|+|+++.... .......++ ...|.+.....+|.+.|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6799999875 889999999999986432 111111112 235666666677788999999998654
No 262
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.08 E-value=1.4e-05 Score=72.60 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=53.1
Q ss_pred eeeeecCCeEEEEEEEec--CCCCeEEEEEC--CE-E---e--e-----------cCCcEEEEEeeC-cEEEEEEccccC
Q psy16863 757 SCQATVNEEFKFTVQVSI--SPEPKVSWFRD--DQ-Q---V--V-----------ESDNVKILKETL-GVCHLKIHALEV 814 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g--~p~p~v~W~k~--g~-~---i--~-----------~~~~~~~~~~~~-~~~~L~I~~~~~ 814 (1075)
.+.+.+|++++|.|.+.+ .+.+.+.|||. |. + + . ...++.+..... ..+.|+|.+++.
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 355889999999999987 67889999994 22 1 1 0 134566554432 578999999999
Q ss_pred CCCeEEEEEEEe
Q psy16863 815 ADQAEWKCIATN 826 (1075)
Q Consensus 815 ~D~G~Y~C~A~N 826 (1075)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999864
No 263
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.07 E-value=1.1e-05 Score=70.29 Aligned_cols=70 Identities=11% Similarity=0.288 Sum_probs=52.1
Q ss_pred ecCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCc-EEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 761 TVNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDN-VKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 761 ~~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~-~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
..|+.+.|.|.+.|. | .+.|+|+|||.++..... .......++ .+.|.|......|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 368899999999997 6 468999999999865543 223333333 235777777778999999999997553
No 264
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.07 E-value=3e-05 Score=69.11 Aligned_cols=79 Identities=16% Similarity=0.408 Sum_probs=55.1
Q ss_pred cCCeEEEEEEEecCC----------CCeEEEEEC--CEEee----c------C----CcEEEEE--eeCcEEEEEEcccc
Q psy16863 762 VNEEFKFTVQVSISP----------EPKVSWFRD--DQQVV----E------S----DNVKILK--ETLGVCHLKIHALE 813 (1075)
Q Consensus 762 ~g~~~~l~C~v~g~p----------~p~v~W~k~--g~~i~----~------~----~~~~~~~--~~~~~~~L~I~~~~ 813 (1075)
.|++++|.|.....+ ...|.|+|. ++.+. . . +|+.+.. ...+..+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 388999999998654 257999995 22211 0 1 2333321 12356789999999
Q ss_pred CCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 814 VADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 814 ~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
.+|+|.|.|.+............|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999876666667777765
No 265
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.05 E-value=1.3e-05 Score=69.32 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=47.7
Q ss_pred CCeEEEEEEEecCCCCeEEEEECCEEeec------------------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVE------------------SDNVKILKETLGVCHLKIHALEVADQAEWKCIA 824 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~------------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A 824 (1075)
|++|+|.|.+...+...|.|+|+...... ..++.+. . ...|.|.+++.+|+|.|+|.+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~--~~sL~I~~l~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--P--NGSLLIQNLTKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--C--CceEEEccCCchhcEEEEEEE
Confidence 78999999988766779999997632210 0122221 2 258999999999999999999
Q ss_pred EeCCceE
Q psy16863 825 TNDFGQS 831 (1075)
Q Consensus 825 ~N~~G~~ 831 (1075)
.+..|..
T Consensus 77 ~~~~~~~ 83 (92)
T cd05741 77 ISTNGVT 83 (92)
T ss_pred EcCCCcE
Confidence 9887543
No 266
>KOG0613|consensus
Probab=98.04 E-value=2.6e-05 Score=93.34 Aligned_cols=254 Identities=12% Similarity=0.031 Sum_probs=151.5
Q ss_pred cCCeEEEEEEEecCCCCeEEEEECCEEcCCC----CeEEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchh
Q psy16863 664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPG----DVYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEE 737 (1075)
Q Consensus 664 ~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~----~~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~ 737 (1075)
++....+.|.+.+.+.+...|+.+....... ..+.+. +..+.+.|+|...+..|.....+.-.+..........
T Consensus 243 e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~ 322 (1205)
T KOG0613|consen 243 EASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPE 322 (1205)
T ss_pred chhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCch
Confidence 3345566666666666666666544332221 122221 2245688999999988888776655554332221111
Q ss_pred h-hhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeecCCcEEEEE-eeCcEEEEEEccccC
Q psy16863 738 D-KLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILK-ETLGVCHLKIHALEV 814 (1075)
Q Consensus 738 ~-~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~~~~~~~~~-~~~~~~~L~I~~~~~ 814 (1075)
. ...+......|.+.....++.+..+..+.+.|...+.+.|. +.||+++.....+....... .......+.|..+.+
T Consensus 323 ~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~ 402 (1205)
T KOG0613|consen 323 SLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP 402 (1205)
T ss_pred hhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc
Confidence 1 11111111233333344556777888999999999999886 99999987766554222211 122245789999999
Q ss_pred CCCeEEEEEEEeCCceEEEEEEEEEEecC-CCCCCeeeeeccee--ecCCCeEEEEEEEEccCC--CeeEEEECCEEcCC
Q psy16863 815 ADQAEWKCIATNDFGQSITSCFLKLNVPK-HYKKPKFLEELKAV--LSEGGAVNLECKVIGVPQ--PTLKWFKDGRELKA 889 (1075)
Q Consensus 815 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~-~~~~p~~~~~~~~~--~~~g~~~~L~C~v~g~p~--p~v~W~k~g~~l~~ 889 (1075)
.+.+.|.|.|.|..|.........|.... ...++.+....... +..-+.+.+.|.+.+.|. ..++|++++.+...
T Consensus 403 ~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~ 482 (1205)
T KOG0613|consen 403 GEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSD 482 (1205)
T ss_pred ccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccc
Confidence 99999999999999998776666665543 33333333332222 223368999999988884 45677888765432
Q ss_pred -------CCeeEEEECCCCceeeEEEEEEEEeCCe
Q psy16863 890 -------GDIHKIISGEDGTCCLGIYTCEAHNCMG 917 (1075)
Q Consensus 890 -------~~~~~i~~~~~~~~d~G~Y~C~a~N~~G 917 (1075)
+...++........+.|.|.-...-..|
T Consensus 483 ~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 483 RSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred ccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence 2223333344455667888655444333
No 267
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.03 E-value=1.6e-05 Score=68.49 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=50.0
Q ss_pred ecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~ 425 (1075)
.++...|.+|++|+|.|.... +...+.|||+|..............+....+.|.+++.+|+|.|.|...
T Consensus 6 a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 6 AHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 345667889999999998754 4568999999975332110011123334578999999999999999975
No 268
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.02 E-value=4.2e-05 Score=64.03 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=46.7
Q ss_pred EEEEEEEecC-CCCeEEEEECCEEeecCCcEEEEEeeC-cE----EEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 766 FKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETL-GV----CHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 766 ~~l~C~v~g~-p~p~v~W~k~g~~i~~~~~~~~~~~~~-~~----~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
+.|.|.+.|. |.+.|+|+|||+++..... .+....+ ++ ..|.|.....+|...|+|.|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 6799999985 9999999999998865432 2322322 22 35666666778889999999997643
No 269
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.01 E-value=2.3e-05 Score=71.21 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=54.5
Q ss_pred cCceeeccCCeEEEEEEEec--CCCcEEEEEEC--CEec-----------------CCCCcEEEEEcC--CEEEEEEccc
Q psy16863 356 LHDIAVKVGTRARLLVEIRS--PTEIKIHWYRN--DRKL-----------------EENKIYRTQHDG--NFYFIDLSSV 412 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g--~p~~~v~W~k~--g~~l-----------------~~~~~~~~~~~g--~~~~L~I~~v 412 (1075)
+..+.+.+|++++|.|.+.+ .+...+.|||. |..+ ....++.+..++ ....|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 34567889999999999977 56789999994 2211 013466666555 6788999999
Q ss_pred CCCCceeEEEEEEe
Q psy16863 413 SLFDSGRWTCLAEN 426 (1075)
Q Consensus 413 ~~~d~G~Y~C~a~n 426 (1075)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 270
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.01 E-value=2.8e-05 Score=66.55 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=50.8
Q ss_pred eeeecCCeEEEEEEEec-CCCCe--EEEEECCEEeecCCcEEE-EEeeCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 758 CQATVNEEFKFTVQVSI-SPEPK--VSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 758 ~~~~~g~~~~l~C~v~g-~p~p~--v~W~k~g~~i~~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
..+.+|+.++|+|.+.| .|.+. |+|||+++.+........ ........+|++..-..+|.-.|+|.|.+.++.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 34679999999999997 57776 799999999864321110 001112456777755566666999999998765
No 271
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.00 E-value=5e-05 Score=65.61 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=51.2
Q ss_pred eEEEEEEEecC-CCC---eEEEEECC--E--Ee--ec-----------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863 765 EFKFTVQVSIS-PEP---KVSWFRDD--Q--QV--VE-----------SDNVKILKETLGVCHLKIHALEVADQAEWKCI 823 (1075)
Q Consensus 765 ~~~l~C~v~g~-p~p---~v~W~k~g--~--~i--~~-----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 823 (1075)
.++|.|..... |.. .|+|.|.. . .+ .. .+|..+.....+..+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 57899998842 222 69998842 1 11 11 12333332233456899999999999999999
Q ss_pred EEe-CCceEEEEEEEEE
Q psy16863 824 ATN-DFGQSITSCFLKL 839 (1075)
Q Consensus 824 A~N-~~G~~~~s~~l~V 839 (1075)
+.| ..|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 7787777777766
No 272
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.00 E-value=4.6e-05 Score=66.65 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=50.7
Q ss_pred eEEEEEEEecCC---CCeEEEEECC---E--Eee---c----------CCcEEEEEe-eCcEEEEEEccccCCCCeEEEE
Q psy16863 765 EFKFTVQVSISP---EPKVSWFRDD---Q--QVV---E----------SDNVKILKE-TLGVCHLKIHALEVADQAEWKC 822 (1075)
Q Consensus 765 ~~~l~C~v~g~p---~p~v~W~k~g---~--~i~---~----------~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C 822 (1075)
+++|.|.....+ ...|.|+|.. + .+. . .+|..+... ..+..+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 588999987544 3489999842 1 111 0 023344322 2345689999999999999999
Q ss_pred EEEe-CCceEEEEEEEEE
Q psy16863 823 IATN-DFGQSITSCFLKL 839 (1075)
Q Consensus 823 ~A~N-~~G~~~~s~~l~V 839 (1075)
.+.| ..|..+....|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 6676655666655
No 273
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.00 E-value=2.6e-05 Score=67.81 Aligned_cols=70 Identities=9% Similarity=0.219 Sum_probs=49.6
Q ss_pred ecCCeEEEEEEEec-CCCCeEEEEECCEEee-cC------------CcE--EEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863 761 TVNEEFKFTVQVSI-SPEPKVSWFRDDQQVV-ES------------DNV--KILKETLGVCHLKIHALEVADQAEWKCIA 824 (1075)
Q Consensus 761 ~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~-~~------------~~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A 824 (1075)
..|++|+|.|.... .....+.|+|....+. .. .++ ++.. ..+...|+|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~-~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF-SQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe-cCCceeEEECCCchHHCEEEEEEE
Confidence 36999999998864 4456899999754321 11 111 1111 233578999999999999999999
Q ss_pred EeCCceE
Q psy16863 825 TNDFGQS 831 (1075)
Q Consensus 825 ~N~~G~~ 831 (1075)
.+..|..
T Consensus 81 ~~~~~~~ 87 (97)
T cd05775 81 NTKNGVT 87 (97)
T ss_pred EcCCCCe
Confidence 9987764
No 274
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.99 E-value=3.4e-05 Score=69.85 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=49.8
Q ss_pred ceeeeecCCeEEEEEEEecCC----CCeEEEEECCE------Eee----------cCCc----EEEEEe-eCcEEEEEEc
Q psy16863 756 KSCQATVNEEFKFTVQVSISP----EPKVSWFRDDQ------QVV----------ESDN----VKILKE-TLGVCHLKIH 810 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p----~p~v~W~k~g~------~i~----------~~~~----~~~~~~-~~~~~~L~I~ 810 (1075)
....+..|++++|.|...... ...+.|++... .+. ...+ +.+... ..+...|+|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 345688999999999987532 25699986321 110 1112 222111 1235789999
Q ss_pred cccCCCCeEEEEEEEeCCce
Q psy16863 811 ALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 811 ~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
+++.+|+|.|.|.+.|.-+.
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eCCcccCEEEEEEEEeCCCC
Confidence 99999999999999987543
No 275
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.99 E-value=5.2e-05 Score=67.52 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=54.8
Q ss_pred CCeEEEEEEecCCC----------eeEEEEcc---CCCeeEEEeeCCCce---eccCcEEEE---ecCCeEEEEEceecc
Q psy16863 150 GTRARLLVEIRSPT----------EIKCQFDL---NNTIPFSFRAQGDHP---IFGNRFRAI---NRDGRTELNIRRVRR 210 (1075)
Q Consensus 150 G~~~~l~c~~~~~~----------~~~c~~~~---~~~~~~~W~~~~~~~---~~~~~~~~~---~~~~~~~L~I~~~~~ 210 (1075)
|++++|+|...... .....|.. ...+.+.++.++... ...+|+.+. ...+...|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 78999999887532 12233321 112233333333211 123455543 234667899999999
Q ss_pred CCCeEEEEEEEcCceeEEEEEEEeee
Q psy16863 211 DDGGRYSVTASNESGYSTAKFELSVE 236 (1075)
Q Consensus 211 ~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (1075)
+|+|.|.|.+.......+..+.|.|.
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 99999999999876677777777775
No 276
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.98 E-value=4.9e-05 Score=63.66 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=43.8
Q ss_pred EEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEEcCC----EEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863 367 ARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGN----FYFIDLSSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~g~----~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
+.|.|.+.+ .|.+.|+|+|+|+++..........++. ...|.+.....++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999966 5888999999999986543222222322 2245554444455669999999987553
No 277
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.96 E-value=7.1e-05 Score=67.37 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=48.3
Q ss_pred ceeEEeeCCeEEEEEEecCCC----eeEEEEc-----cCC-CeeEEEeeCCCceecc----CcEEEEe--cCCeEEEEEc
Q psy16863 143 HDIAVKVGTRARLLVEIRSPT----EIKCQFD-----LNN-TIPFSFRAQGDHPIFG----NRFRAIN--RDGRTELNIR 206 (1075)
Q Consensus 143 ~~~~v~~G~~~~l~c~~~~~~----~~~c~~~-----~~~-~~~~~W~~~~~~~~~~----~~~~~~~--~~~~~~L~I~ 206 (1075)
..+.+.+|++++|.|...... .+...|. +.. ...+.+. ++...... +|+.+.. ..+...|+|.
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~-~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYH-KRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEEC-CCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 466788999999999876432 1223331 111 1112222 12111112 2333221 2345689999
Q ss_pred eeccCCCeEEEEEEEcCce
Q psy16863 207 RVRRDDGGRYSVTASNESG 225 (1075)
Q Consensus 207 ~~~~~D~G~Y~C~a~n~~g 225 (1075)
+++.+|+|.|.|.+.|..+
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999998654
No 278
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.96 E-value=3.4e-05 Score=67.48 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=51.6
Q ss_pred eeccCCeEEEEEEEecC--CCcEEEEEECCE--ec------------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863 360 AVKVGTRARLLVEIRSP--TEIKIHWYRNDR--KL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423 (1075)
Q Consensus 360 ~v~~G~~v~l~C~~~g~--p~~~v~W~k~g~--~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~ 423 (1075)
.+.+|++++|.|...+. ....+.|||... .+ ....++....++....|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998664 456899998431 11 012466666677778899999999999999999
Q ss_pred EEe
Q psy16863 424 AEN 426 (1075)
Q Consensus 424 a~n 426 (1075)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 865
No 279
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.96 E-value=5e-05 Score=68.77 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=50.5
Q ss_pred cCceeeccCCeEEEEEEEecCC----CcEEEEEECCE------ec---------C-CC----CcEEEEE--cCCEEEEEE
Q psy16863 356 LHDIAVKVGTRARLLVEIRSPT----EIKIHWYRNDR------KL---------E-EN----KIYRTQH--DGNFYFIDL 409 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~g~------~l---------~-~~----~~~~~~~--~g~~~~L~I 409 (1075)
+..+.+.+|++++|.|...... ...+.|++... .+ . .. .|+.+.. ..+...|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4566788999999999986532 25799987321 11 0 01 1222221 123467999
Q ss_pred cccCCCCceeEEEEEEeCCCc
Q psy16863 410 SSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 410 ~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
.+++.+|+|.|.|.+.|....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999987554
No 280
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.94 E-value=3e-05 Score=67.35 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=53.3
Q ss_pred ccCCeEEEEEEEec-CCCcEEEEEECCEecC--C-----------CCcE--EEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863 362 KVGTRARLLVEIRS-PTEIKIHWYRNDRKLE--E-----------NKIY--RTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425 (1075)
Q Consensus 362 ~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~--~-----------~~~~--~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~ 425 (1075)
..|++|+|.|.... .....+.|+|....+. . ..++ +...++....|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998854 4456999999753221 0 0111 23334445679999999999999999999
Q ss_pred eCCCce-eeEEEEEe
Q psy16863 426 NAVGRS-HCSCELSV 439 (1075)
Q Consensus 426 n~~g~~-~~s~~l~V 439 (1075)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 887654 33444444
No 281
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.94 E-value=4.3e-05 Score=63.78 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=46.0
Q ss_pred EEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863 766 FKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFG 829 (1075)
Q Consensus 766 ~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G 829 (1075)
+.|.|.+.| +|.+.|+|+|||+.+............++ ...|.|.....+|...|+|.|.|..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 679999997 68889999999999864332222222222 34677776668889999999998753
No 282
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.93 E-value=4.9e-05 Score=65.07 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=50.4
Q ss_pred cCceeeccCCeEEEEEEEec-CCCcE--EEEEECCEecCCCCcEEE--EEcCCEEEEEEcccCCCCce-eEEEEEEeCCC
Q psy16863 356 LHDIAVKVGTRARLLVEIRS-PTEIK--IHWYRNDRKLEENKIYRT--QHDGNFYFIDLSSVSLFDSG-RWTCLAENAVG 429 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g-~p~~~--v~W~k~g~~l~~~~~~~~--~~~g~~~~L~I~~v~~~d~G-~Y~C~a~n~~g 429 (1075)
+.+..+.+|+.++|.|.+.| .|.+. |+|||++..+........ .......+|.+. +..+|.| .|+|+|.+..+
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLR 86 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccC
Confidence 34445789999999999966 66665 799999999965321110 112234566665 4556666 99999998765
Q ss_pred c
Q psy16863 430 R 430 (1075)
Q Consensus 430 ~ 430 (1075)
.
T Consensus 87 ~ 87 (100)
T cd05755 87 P 87 (100)
T ss_pred c
Confidence 4
No 283
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.92 E-value=0.00012 Score=64.48 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=37.7
Q ss_pred CcEEEEec---CCeEEEEEceeccCCCeEEEEEEEcCceeEEEEEEEeee
Q psy16863 190 NRFRAINR---DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236 (1075)
Q Consensus 190 ~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (1075)
+|..+... .+...|.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 35554332 356899999999999999999999988887888888775
No 284
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.91 E-value=0.00011 Score=61.55 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=44.6
Q ss_pred EEEEEEEec-CCCcEEEEEECCEecCCCCcEEE-EEcCCE----EEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863 367 ARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRT-QHDGNF----YFIDLSSVSLFDSGRWTCLAENAVGRS 431 (1075)
Q Consensus 367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~-~~~g~~----~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 431 (1075)
+.|.|.+.| .|.+.|+|+|||++|........ ..++.. ..|.|.....+|...|+|+|.|.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 689999976 58889999999999876432111 223222 345554545556679999999986543
No 285
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.91 E-value=5e-05 Score=65.68 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=47.5
Q ss_pred CCeEEEEEEEecCCCcEEEEEECCEecCC------------------CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEE------------------NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425 (1075)
Q Consensus 364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~------------------~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~ 425 (1075)
|++|+|.|.+...+...|.|+|+...... ..|+.+..+ ..|.|.+++.+|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 78999999987666779999997633211 112222222 469999999999999999999
Q ss_pred eCCCce
Q psy16863 426 NAVGRS 431 (1075)
Q Consensus 426 n~~g~~ 431 (1075)
...|..
T Consensus 78 ~~~~~~ 83 (92)
T cd05741 78 STNGVT 83 (92)
T ss_pred cCCCcE
Confidence 876543
No 286
>KOG0613|consensus
Probab=97.88 E-value=9.4e-05 Score=88.79 Aligned_cols=136 Identities=15% Similarity=0.041 Sum_probs=87.9
Q ss_pred eccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCC-ceEEEEEeeeeecCCceEEEEEECCCCce
Q psy16863 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL-GGYSIEINYLEAVDDGEWKCVATSSSGVK 634 (1075)
Q Consensus 556 ~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 634 (1075)
....+.+..+..+++.|...+...|..+.||+++.....+........+. ....+.|..+...+.+.|+|.|.|..|..
T Consensus 340 ~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~ 419 (1205)
T KOG0613|consen 340 RNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE 419 (1205)
T ss_pred ccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence 34556677788899999999999887799998877655444322222211 23468889999999999999999999987
Q ss_pred eeeeEEEEEeCCCCcCCCceeecccee--eecCCeEEEEEEEecCCC--CeEEEEECCEEc
Q psy16863 635 QFSAAYVHVLMPKNYRKPRFVESLKAV--MTDDGLVSFECKVVGFPT--PTLQWFKDNEEL 691 (1075)
Q Consensus 635 ~~~~~~l~v~~p~~~~~p~~~~~~~~~--~~~g~~~~l~C~v~g~p~--p~v~W~k~g~~l 691 (1075)
...........+....++.+....... +..-..+.+.|.+.+.|. ..++|++++.+.
T Consensus 420 ~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~ 480 (1205)
T KOG0613|consen 420 QTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPL 480 (1205)
T ss_pred cccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccc
Confidence 654433333333332333332222222 223357889999888774 456677765443
No 287
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.88 E-value=4.7e-05 Score=66.63 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=49.8
Q ss_pred eeecCCeEEEEEEEecC--CCCeEEEEECCE---E--ee---------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863 759 QATVNEEFKFTVQVSIS--PEPKVSWFRDDQ---Q--VV---------ESDNVKILKETLGVCHLKIHALEVADQAEWKC 822 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~--p~p~v~W~k~g~---~--i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 822 (1075)
.+.+|++++|.|.+.+. ....+.|||... + |. ...++...... +...|+|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChhhCEEEEE
Confidence 46789999999999865 556899998431 1 11 12355554433 57789999999999999999
Q ss_pred EEEe
Q psy16863 823 IATN 826 (1075)
Q Consensus 823 ~A~N 826 (1075)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9875
No 288
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.87 E-value=9.7e-05 Score=65.14 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=55.5
Q ss_pred CCeEEEEEEecCCC-------eeEEEEccC------CCeeEEEeeCCCce---eccCcEEEEec---CCeEEEEEceecc
Q psy16863 150 GTRARLLVEIRSPT-------EIKCQFDLN------NTIPFSFRAQGDHP---IFGNRFRAINR---DGRTELNIRRVRR 210 (1075)
Q Consensus 150 G~~~~l~c~~~~~~-------~~~c~~~~~------~~~~~~W~~~~~~~---~~~~~~~~~~~---~~~~~L~I~~~~~ 210 (1075)
|++++|.|....++ .+...|..- ....+.|+.++... ...+|..+... .+...|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67889999855321 234444311 12233444444321 23456655432 3578999999999
Q ss_pred CCCeEEEEEEEcCceeEEEEEEEeee
Q psy16863 211 DDGGRYSVTASNESGYSTAKFELSVE 236 (1075)
Q Consensus 211 ~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (1075)
+|+|.|.|.+.......+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999877667777777775
No 289
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.85 E-value=0.00016 Score=65.56 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=53.2
Q ss_pred cceeeeecCCeEEEEEEEe-cCCCCeEEEEECCE-----Eee--------------cCCcEEEEEe-eCcEEEEEEcccc
Q psy16863 755 LKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQ-----QVV--------------ESDNVKILKE-TLGVCHLKIHALE 813 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~-----~i~--------------~~~~~~~~~~-~~~~~~L~I~~~~ 813 (1075)
+..+.+.+|+++.|.|... ......+.|++... .+. ...++.+... ..+.+.|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 3456788999999999999 45667999998322 111 0123333322 2347889999999
Q ss_pred CCCCeEEEEEEEeC
Q psy16863 814 VADQAEWKCIATND 827 (1075)
Q Consensus 814 ~~D~G~Y~C~A~N~ 827 (1075)
.+|+|.|.|.+...
T Consensus 88 ~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 88 PSDSGTYFCQVSTS 101 (114)
T ss_dssp GGGEEEEEEEEEES
T ss_pred cCcCEEEEEEEEEC
Confidence 99999999999987
No 290
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.84 E-value=0.00014 Score=66.01 Aligned_cols=73 Identities=16% Similarity=0.320 Sum_probs=54.0
Q ss_pred ecCceeeccCCeEEEEEEEe-cCCCcEEEEEECCE-----ecC--------------CCCcEEEEEc--CCEEEEEEccc
Q psy16863 355 RLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDR-----KLE--------------ENKIYRTQHD--GNFYFIDLSSV 412 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~-----~l~--------------~~~~~~~~~~--g~~~~L~I~~v 412 (1075)
.+..+.+.+|+++.|.|... ......+.|++... .+. -..++.+..+ .....|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 35677899999999999998 45567999999332 111 0123333333 34678999999
Q ss_pred CCCCceeEEEEEEeC
Q psy16863 413 SLFDSGRWTCLAENA 427 (1075)
Q Consensus 413 ~~~d~G~Y~C~a~n~ 427 (1075)
+.+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999876
No 291
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.84 E-value=9.2e-05 Score=65.88 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=49.1
Q ss_pred ecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--------------CceeccCcEEEEecCCeEEEEEc
Q psy16863 141 RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--------------DHPIFGNRFRAINRDGRTELNIR 206 (1075)
Q Consensus 141 ~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--------------~~~~~~~~~~~~~~~~~~~L~I~ 206 (1075)
.+..+.+.+|++++|.|.+.... ....+.|++.. .......|+.....+....|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~---------~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 76 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSV---------SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTIS 76 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCC---------CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEEC
Confidence 34566788999999999886432 01234444321 01111246665555566789999
Q ss_pred eeccCCCeEEEEEEEcC
Q psy16863 207 RVRRDDGGRYSVTASNE 223 (1075)
Q Consensus 207 ~~~~~D~G~Y~C~a~n~ 223 (1075)
+++.+|+|.|.|.+.+.
T Consensus 77 ~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 77 RVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCChHHCEEEEEEEeCC
Confidence 99999999999998653
No 292
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.83 E-value=5.8e-05 Score=65.74 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=50.9
Q ss_pred ccCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCc---EEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 362 KVGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKI---YRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 362 ~~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
..|+.++|.|.+.|. | .+.|+|++||..+..... .....+|... .|.|......|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 478999999999886 5 579999999999876543 2223344433 4666665566999999999998654
No 293
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.82 E-value=0.00027 Score=62.39 Aligned_cols=78 Identities=15% Similarity=0.313 Sum_probs=54.7
Q ss_pred CCeEEEEEEEecCC-----------CCeEEEEEC-----CE-----Ee--ecC----------CcEEEEEe--eCcEEEE
Q psy16863 763 NEEFKFTVQVSISP-----------EPKVSWFRD-----DQ-----QV--VES----------DNVKILKE--TLGVCHL 807 (1075)
Q Consensus 763 g~~~~l~C~v~g~p-----------~p~v~W~k~-----g~-----~i--~~~----------~~~~~~~~--~~~~~~L 807 (1075)
|.+++|.|.+.-.| .+.|.|+|- |+ .+ ..+ +|..+... ..+...|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999988544 238999873 11 11 111 23333322 2356789
Q ss_pred EEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 808 ~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
.|.+++.+|+|.|+|.+.+.....+....|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999988877777777775
No 294
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.81 E-value=0.00015 Score=68.10 Aligned_cols=87 Identities=9% Similarity=0.237 Sum_probs=61.8
Q ss_pred ceeeeecCCeEEEEEEEe-cCCCCeEEEEECCEEee----------c--CCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863 756 KSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVV----------E--SDNVKILKETLGVCHLKIHALEVADQAEWKC 822 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~i~----------~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 822 (1075)
..++|.+|+++.|.|... +...+.++|+|..+.+. + .+|+.+.........|+|.+++.+|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 346688999999999985 55678999999743321 1 1245544444456789999999999999999
Q ss_pred EEEe-CCc-eEEEEEEEEEEec
Q psy16863 823 IATN-DFG-QSITSCFLKLNVP 842 (1075)
Q Consensus 823 ~A~N-~~G-~~~~s~~l~V~~~ 842 (1075)
...- +.| ..+....|.|..+
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEecCCCCCceeEEEEEEEch
Confidence 8752 235 5556677777653
No 295
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.80 E-value=0.0001 Score=64.17 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=51.3
Q ss_pred CCeEEEEEEEecCCCC-eEEEEECCE----Eee---c----------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863 763 NEEFKFTVQVSISPEP-KVSWFRDDQ----QVV---E----------SDNVKILKETLGVCHLKIHALEVADQAEWKCIA 824 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p-~v~W~k~g~----~i~---~----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A 824 (1075)
|++++|.|........ .|.|+|... .+. . .+++.+.....+.+.|.|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7889999997754332 699998532 111 0 112233223335678999999999999999997
Q ss_pred E-eCCceEEEEEEEEE
Q psy16863 825 T-NDFGQSITSCFLKL 839 (1075)
Q Consensus 825 ~-N~~G~~~~s~~l~V 839 (1075)
. ...|.......|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 45566655666665
No 296
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.78 E-value=0.00022 Score=62.90 Aligned_cols=78 Identities=13% Similarity=0.285 Sum_probs=53.5
Q ss_pred CCeEEEEEEEecCC-------CCeEEEEEC-----CEEe--e--c----------CCcEEEEEee--CcEEEEEEccccC
Q psy16863 763 NEEFKFTVQVSISP-------EPKVSWFRD-----DQQV--V--E----------SDNVKILKET--LGVCHLKIHALEV 814 (1075)
Q Consensus 763 g~~~~l~C~v~g~p-------~p~v~W~k~-----g~~i--~--~----------~~~~~~~~~~--~~~~~L~I~~~~~ 814 (1075)
|+++.|.|...-.| .+.|.|+|- .+.+ . . ..|..+.... .+...|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999976433 368999874 1111 0 1 1233333211 3567999999999
Q ss_pred CCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863 815 ADQAEWKCIATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 815 ~D~G~Y~C~A~N~~G~~~~s~~l~V~ 840 (1075)
+|+|.|.|.........+..+.|+|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999866566666777665
No 297
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.76 E-value=0.00019 Score=61.34 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=52.2
Q ss_pred eEEEEEEEecCC-CCeEEEEECC----EEeec-------------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE-E
Q psy16863 765 EFKFTVQVSISP-EPKVSWFRDD----QQVVE-------------SDNVKILKETLGVCHLKIHALEVADQAEWKCIA-T 825 (1075)
Q Consensus 765 ~~~l~C~v~g~p-~p~v~W~k~g----~~i~~-------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A-~ 825 (1075)
+++|.|.....+ ...|+|.|-. ..+.. .+|..+.....+..+|.|.+++.+|+|.|+|.+ .
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 688999987433 3489998842 12210 123444323334568999999999999999996 5
Q ss_pred eCCceEEEEEEEEE
Q psy16863 826 NDFGQSITSCFLKL 839 (1075)
Q Consensus 826 N~~G~~~~s~~l~V 839 (1075)
.+.|+.+++..|+|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 67788888888876
No 298
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.74 E-value=0.00014 Score=65.91 Aligned_cols=72 Identities=17% Similarity=0.320 Sum_probs=52.8
Q ss_pred cceeeeecCCeEEEEEEEecC-CCCeEEEEEC--CEE---e---------ecCCcEEEEEe-eCcEEEEEEccccCCCCe
Q psy16863 755 LKSCQATVNEEFKFTVQVSIS-PEPKVSWFRD--DQQ---V---------VESDNVKILKE-TLGVCHLKIHALEVADQA 818 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~--g~~---i---------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G 818 (1075)
++.+.+..|++++|.|..... ....+.|||. +.. | ...+|+.+..+ ..+...|+|.+++.+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 345668899999999998854 4568999983 211 1 01245665432 345789999999999999
Q ss_pred EEEEEEEe
Q psy16863 819 EWKCIATN 826 (1075)
Q Consensus 819 ~Y~C~A~N 826 (1075)
.|.|.+.+
T Consensus 86 ~Y~C~~~~ 93 (116)
T cd07706 86 KYFCALST 93 (116)
T ss_pred EEEEEEEC
Confidence 99999985
No 299
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.73 E-value=0.00017 Score=65.39 Aligned_cols=74 Identities=22% Similarity=0.386 Sum_probs=54.4
Q ss_pred eecCceeeccCCeEEEEEEEecC-CCcEEEEEECC--Ee---c---------CCCCcEEEEE--cCCEEEEEEcccCCCC
Q psy16863 354 RRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRND--RK---L---------EENKIYRTQH--DGNFYFIDLSSVSLFD 416 (1075)
Q Consensus 354 ~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~g--~~---l---------~~~~~~~~~~--~g~~~~L~I~~v~~~d 416 (1075)
..+..+.+.+|++++|.|..... ....+.|||.. .. + ....|+.+.. .+....|+|.++..+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 34567789999999999998653 45789999832 11 1 1124565543 3456789999999999
Q ss_pred ceeEEEEEEeC
Q psy16863 417 SGRWTCLAENA 427 (1075)
Q Consensus 417 ~G~Y~C~a~n~ 427 (1075)
+|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999999853
No 300
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.71 E-value=0.026 Score=59.99 Aligned_cols=177 Identities=12% Similarity=0.112 Sum_probs=99.2
Q ss_pred eEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCee--EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-
Q psy16863 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY--STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS- 375 (1075)
Q Consensus 299 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g- 375 (1075)
|.+........|.|..++...+|.|+=...+..+. ....+.|..+ .+|.+.. ..-.+.+|++..-.|.+..
T Consensus 173 y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y----r~Psvsv--~~~PvL~Ge~Y~AtC~va~Y 246 (466)
T PHA03270 173 YSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF----RRPSLSI--RPHAVLEGEPFGATCVAANY 246 (466)
T ss_pred ccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe----cCCcccc--cCCccccCCCceEEEEeeee
Confidence 33333334457999999999999999887765553 3344444444 3555433 3345789999999999965
Q ss_pred CC--CcEEEEEECCEecCCCCc----EEEEEcCCE--EEEEEcccCCCCc-eeEEEEEEeCCCce-eeEEEEEeecCCCC
Q psy16863 376 PT--EIKIHWYRNDRKLEENKI----YRTQHDGNF--YFIDLSSVSLFDS-GRWTCLAENAVGRS-HCSCELSVLVPKAY 445 (1075)
Q Consensus 376 ~p--~~~v~W~k~g~~l~~~~~----~~~~~~g~~--~~L~I~~v~~~d~-G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~ 445 (1075)
.| ...++||+||.++..... .....+|-. ++|++........ =..+|.+.=..+.. .....-. -.+..+
T Consensus 247 YPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa-~~P~VY 325 (466)
T PHA03270 247 YPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNAT-GAPTVL 325 (466)
T ss_pred cCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeeccc-ccCccc
Confidence 33 458999999998854222 222234422 2333322211111 27799986332222 2122111 122233
Q ss_pred CCCeeeeecceEEecCCeEEEEEEEECCCCC-eEEEEeCCEeccC
Q psy16863 446 KAPFFTKELEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKIKA 489 (1075)
Q Consensus 446 ~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~l~~ 489 (1075)
.+|.+... +..|. ..|.+...|.. .+.|+.++.....
T Consensus 326 ~~P~Isv~----F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 326 PRPTIEME----FGGDE---AVCTAACVPEGVTLAWLLGADPAPA 363 (466)
T ss_pred cCCeEEEE----EeCCE---EEEeccccCCCCEEEEEecCCCCCC
Confidence 44444432 33332 24666655543 8999988766543
No 301
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.71 E-value=0.00021 Score=67.19 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=60.6
Q ss_pred CceeeccCCeEEEEEEEe-cCCCcEEEEEECCEec----------CC--CCcEE-EEEcCCEEEEEEcccCCCCceeEEE
Q psy16863 357 HDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKL----------EE--NKIYR-TQHDGNFYFIDLSSVSLFDSGRWTC 422 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~~l----------~~--~~~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C 422 (1075)
..+.|.+|++++|.|... +...+.+.|+|....+ .+ .+|+. +...-....|+|.+++.+|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 456789999999999984 5567899999974322 11 12444 2333344679999999999999999
Q ss_pred EEEe-CCC-ceeeEEEEEeecC
Q psy16863 423 LAEN-AVG-RSHCSCELSVLVP 442 (1075)
Q Consensus 423 ~a~n-~~g-~~~~s~~l~V~~~ 442 (1075)
...- +.| ..+...-|+|..+
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEecCCCCCceeEEEEEEEch
Confidence 9753 345 5566666777654
No 302
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=97.70 E-value=0.19 Score=58.29 Aligned_cols=457 Identities=13% Similarity=0.130 Sum_probs=226.6
Q ss_pred ceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEee-CCeEEEEEcccCCCCCEEE--EEEEE
Q psy16863 252 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR-DGRTELNIRRVRRDDGGRY--SVTAS 328 (1075)
Q Consensus 252 ~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~d~G~Y--~C~a~ 328 (1075)
..+..|+.+.|.+.... .++.+.+|..+. ..+....+ +....|... +...|.| .|.+.
T Consensus 107 ~~l~vGe~l~~~V~~~~-----------e~~LYKF~I~~~-----~~w~~iqDYst~n~lsyt---~~~~G~Y~ll~~~K 167 (667)
T PRK14081 107 DTLNVGEKIEIKVDSNK-----------EPLMYRYWIKED-----NNWKLIKDYSTENSLSYT---ANKPGKYELLVECK 167 (667)
T ss_pred ccccCCCEEEEEEEecc-----------CcEEEEEEEcCC-----CcEEEEEecCCcceEEEE---ecCCCcEEEEEEEe
Confidence 34668988888776543 235666665441 22233322 122244442 3466666 67776
Q ss_pred eCCee----EEEEEEEEEecCCCCCCeeee--ecCceeeccCCeEEEEEEEec--CCCcEEEEEECCEecCCCCcEEEEE
Q psy16863 329 NESGY----STAKFELSVESQVPDAPAFIR--RLHDIAVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKIYRTQH 400 (1075)
Q Consensus 329 n~~g~----~~~~~~l~V~~~~~~~p~~~~--~~~~~~v~~G~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~~~~~~ 400 (1075)
+.... ..+.+.+.|.. ...+.+.. .+ +..+..|+.+.|...+.. .-..-++..+.+ ..+.....+.
T Consensus 168 d~~S~~~fDD~~~v~y~Vk~--~~~v~I~~F~~l-ns~~i~~~eI~f~~~a~~~~g~~~LYKF~~i~---~~G~~~~~qd 241 (667)
T PRK14081 168 RIDSTKDFDDFKKVKFKVKE--IDKVEITDFKCL-NKELICDEELVFEVESVYEEDRTILYKFVKID---SDGKQTCIQD 241 (667)
T ss_pred cCCCccccCcceEEEEEccc--CcceEEEecccc-CcceecCcEEEEEEEEEeCCCceEEEEEEEEC---CCCCEEEecC
Confidence 64443 34445555542 12222221 12 234556999999966543 333445554411 1111111111
Q ss_pred cCCEEEEEEcccCCCCceeEE--EEEEeCCCc----eeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCC
Q psy16863 401 DGNFYFIDLSSVSLFDSGRWT--CLAENAVGR----SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP 474 (1075)
Q Consensus 401 ~g~~~~L~I~~v~~~d~G~Y~--C~a~n~~g~----~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p 474 (1075)
-+....+ .-.+..+|.|+ |.+...... +.+....+|...+...--.+..........|+.+.|.+.+.|.-
T Consensus 242 Yst~n~~---~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~ 318 (667)
T PRK14081 242 YSTKNIV---SYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGK 318 (667)
T ss_pred ccccceE---EEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCC
Confidence 1222222 23467899886 556554332 23334444432111111123333333356788999999999866
Q ss_pred CCeEEEEeCCEeccCCC---EEEEEeCCCCCCCcEEEEEEEE--eccee----eEEEEEEEEeccccccCCCCCCcCCCC
Q psy16863 475 TPQLIWYKDNKKIKAGD---IFALTANPKDPSSLGTYTCEAV--NCMGA----AFSTSRVIARGQQSFLDNDDVPFNSLM 545 (1075)
Q Consensus 475 ~~~v~W~~~g~~l~~~~---~~~l~i~~~~~~d~G~Y~C~a~--n~~g~----~~~~~~v~v~~~~~~~~~~~~~~~~~~ 545 (1075)
...++..-.|..+...+ ...+.. .++.+|.|...+. +.... +.....+.+...
T Consensus 319 ~llYrf~I~G~~~e~~~Y~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~--------------- 380 (667)
T PRK14081 319 ELLYRFIIKGKESEDSGYIRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEK--------------- 380 (667)
T ss_pred ceEEEEEECCcEEeeccccccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEEccc---------------
Confidence 66776555566554322 112332 2345799976654 22221 122223333311
Q ss_pred CCCCCCeee--eeccceEeecCCeEEEEEEEecCCCCceEE-EEe-CCeEEecCCcEEEEEcCCceEEEEEeeeeecCCc
Q psy16863 546 PPGPAPIFI--KEVENVKAKIGTSAILECQVLVPPWPRSIY-WYN-KEGVVEASDKYHIMADGLGGYSIEINYLEAVDDG 621 (1075)
Q Consensus 546 ~~~~~~~~~--~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~-W~~-~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 621 (1075)
...|..+. ..+.......|+++.+.|.+.+... ..+. |.+ +|..+... .+. . ...+. ..+.-+|
T Consensus 381 -~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~-~lY~f~ik~ng~~ve~~-~Y~--~----~~~~~---f~P~~~G 448 (667)
T PRK14081 381 -SKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTN-LRYSFIIKKDGKEEEKI-DYG--K----NNWVN---FIPEEKG 448 (667)
T ss_pred -CCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCe-EEEEEEEEECCEEEEEe-ecc--c----ccEEE---EEECCCe
Confidence 01122111 1223345677999999999987753 2343 333 44444321 110 0 01222 2345677
Q ss_pred eEEEE--EECCCCceee---eeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCCeEEEE--ECCEEcC--
Q psy16863 622 EWKCV--ATSSSGVKQF---SAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWF--KDNEELK-- 692 (1075)
Q Consensus 622 ~Y~C~--a~n~~g~~~~---~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~--k~g~~l~-- 692 (1075)
.|+.. |.|....... ....+.|....+..--.++.+.......|+.++|+|.+.|.-...+..+ .+|..+.
T Consensus 449 ~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t 528 (667)
T PRK14081 449 NYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET 528 (667)
T ss_pred eEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe
Confidence 77654 4555443321 2233444321111111122233345667999999999998655544433 3555442
Q ss_pred ---CCCeEEEeecCCCceEEEEE--EecCce----EEEEEEEEEEeccccCchhhhhhhccCCCCCeEEe-ccceeeeec
Q psy16863 693 ---PGDVYQLTGTSSLGSYCCVA--KNVMGK----AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE-GLKSCQATV 762 (1075)
Q Consensus 693 ---~~~~~~~~~~~d~G~Y~C~a--~N~~g~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~ 762 (1075)
.+..|.+. ...+|.|+..+ .|.... ....+.+.|.+. .|+.-+. ......+..
T Consensus 529 ~Ys~~~~ysf~-P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~----------------~pi~nt~~~~~~~~~~~ 591 (667)
T PRK14081 529 DYIKNKKYKFI-PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA----------------LPITNTKIKTSKKKFKC 591 (667)
T ss_pred eccccceEEEe-ecCCceEEEEEEEcccccccccccceEEEEEEcCC----------------CCceeeEEEeecceEEc
Confidence 23445554 34789997655 554433 234566777642 1222221 233456888
Q ss_pred CCeEEEEEEEecCCCCeEEEE
Q psy16863 763 NEEFKFTVQVSISPEPKVSWF 783 (1075)
Q Consensus 763 g~~~~l~C~v~g~p~p~v~W~ 783 (1075)
|+.++|+....|.-..-+..+
T Consensus 592 n~~~t~~~~~~gg~~v~Yef~ 612 (667)
T PRK14081 592 NEEVTFSVKSEGGKDVCYEFY 612 (667)
T ss_pred CCeEEEEEEccCCCcEEEEEE
Confidence 999999999888766655543
No 303
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.69 E-value=0.00015 Score=63.39 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=51.2
Q ss_pred eeecCCeEEEEEEEec-CCCCeEEEEECCE-----Ee--------ecCCcEEEEEe-eCcEEEEEEccccCCCCeEEEEE
Q psy16863 759 QATVNEEFKFTVQVSI-SPEPKVSWFRDDQ-----QV--------VESDNVKILKE-TLGVCHLKIHALEVADQAEWKCI 823 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~-----~i--------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 823 (1075)
.+.+|++++|.|.... .+...+.|+|... .| ....++.+... ..+.+.|+|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 4789999999999875 3566899998642 11 11245555422 24678999999999999999999
Q ss_pred EEeC
Q psy16863 824 ATND 827 (1075)
Q Consensus 824 A~N~ 827 (1075)
+.+.
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 9875
No 304
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.67 E-value=0.0002 Score=61.71 Aligned_cols=65 Identities=23% Similarity=0.463 Sum_probs=51.1
Q ss_pred CeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC---------CCEEEEEeCCCCCCCcEEEEEEEE
Q psy16863 448 PFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAV 513 (1075)
Q Consensus 448 p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~---------~~~~~l~i~~~~~~d~G~Y~C~a~ 513 (1075)
|.+...+..++.+|++|+|.|.... +...+.|+|+|..... .....+.|..++.+|+|.|+|...
T Consensus 2 P~l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4666667777899999999998765 5568999999865321 124467899999999999999975
No 305
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.66 E-value=0.00051 Score=60.07 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=34.6
Q ss_pred CcEEEEe--cCCeEEEEEceeccCCCeEEEEEEEc-CceeEEEEEEEee
Q psy16863 190 NRFRAIN--RDGRTELNIRRVRRDDGGRYSVTASN-ESGYSTAKFELSV 235 (1075)
Q Consensus 190 ~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n-~~g~~~~~~~l~V 235 (1075)
+|.++.. ..+...|+|.+++.+|+|.|.|.+.+ ..|..+..+.|.|
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 4555542 23456899999999999999999998 6676666666665
No 306
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.65 E-value=0.012 Score=62.41 Aligned_cols=122 Identities=11% Similarity=0.189 Sum_probs=72.2
Q ss_pred eeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCC--EEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN--FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 360 ~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~--~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 437 (1075)
....|+.+.+.-.... ....+.|--.-.+=..-..|.+ .|. ...|.|..++...+|.|+-..-+..+.......+
T Consensus 138 ~a~~~g~l~y~sa~~~-~~~~~~~a~ga~Pg~~P~~y~~--~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~V 214 (466)
T PHA03270 138 TAPPGGELVYDSAPNR-TDPRVRWAEGAGPGARPRLYSV--EGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWT 214 (466)
T ss_pred ccCCCceEEeccCccc-cCcccccccCCCCCCCCccccc--cCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEE
Confidence 3445666655422211 2446777632211000112333 232 2369999999999999999987766644433334
Q ss_pred EeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCC---eEEEEeCCEecc
Q psy16863 438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP---QLIWYKDNKKIK 488 (1075)
Q Consensus 438 ~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~v~W~~~g~~l~ 488 (1075)
+|.. +.+|.+..... .+.+|+...-.|.+..+-++ .++||+||.++.
T Consensus 215 tV~~---yr~Psvsv~~~-PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 215 RVRM---FRRPSLSIRPH-AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred EEEE---ecCCcccccCC-ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 4432 22334333322 25689999999999875444 889999999885
No 307
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.63 E-value=0.00023 Score=61.96 Aligned_cols=69 Identities=25% Similarity=0.453 Sum_probs=45.7
Q ss_pred CCeEEEEEEEecCCCCceEEEEeCCeE----Ee---c----------CCcEEEEEcCCceEEEEEeeeeecCCceEEEEE
Q psy16863 565 GTSAILECQVLVPPWPRSIYWYNKEGV----VE---A----------SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVA 627 (1075)
Q Consensus 565 G~~~~L~C~~~~~p~p~~v~W~~~~~~----i~---~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 627 (1075)
|++++|.|..........+.|++.... +. . ..+..+...+.+..+|+|.+++.+|+|.|+|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999765543347999985421 10 0 112222223334578999999999999999997
Q ss_pred ECC-CCc
Q psy16863 628 TSS-SGV 633 (1075)
Q Consensus 628 ~n~-~g~ 633 (1075)
... .|.
T Consensus 81 ~~~p~g~ 87 (97)
T cd05846 81 NTFPDGS 87 (97)
T ss_pred EeCCCCC
Confidence 643 344
No 308
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.62 E-value=0.0068 Score=64.99 Aligned_cols=168 Identities=15% Similarity=0.245 Sum_probs=96.2
Q ss_pred EEEEEcccCCCCCEEEEEEEEeCC-e--eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC--CcEE
Q psy16863 308 TELNIRRVRRDDGGRYSVTASNES-G--YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT--EIKI 381 (1075)
Q Consensus 308 ~~L~I~~~~~~d~G~Y~C~a~n~~-g--~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p--~~~v 381 (1075)
..|+|.+++..++|.|.=+..+.. + ..+..+.|.++ .+|.+.. ..-.+.+|++..-.|.+.. .| ...+
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y----r~PsVsV--~p~PVL~Ge~YkAtC~vA~YYPp~Svrl 362 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY----KRPNITV--IGDPVLLGNPYAAYCKVNKYYPPHSVIV 362 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe----cCCCccc--cCCccccCCCceEEEEeeeecCCCceEE
Confidence 469999999999999987665322 2 23445555555 3554432 3346789999999999965 33 4589
Q ss_pred EEEECCEecCCCC---cEEEEEcCCEE---EEEEcccCCCC--ceeEEEEEEeCCC-ceeeEEEEEeecCCCCCCCeeee
Q psy16863 382 HWYRNDRKLEENK---IYRTQHDGNFY---FIDLSSVSLFD--SGRWTCLAENAVG-RSHCSCELSVLVPKAYKAPFFTK 452 (1075)
Q Consensus 382 ~W~k~g~~l~~~~---~~~~~~~g~~~---~L~I~~v~~~d--~G~Y~C~a~n~~g-~~~~s~~l~V~~~~~~~~p~~~~ 452 (1075)
+||+||.++.... .+....+|.+. +|++......| -=..+|.+.=..+ .......-.+ .+..+.+|.+..
T Consensus 363 rWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaa-tP~VY~~PtISm 441 (566)
T PHA03269 363 KWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAV-TPDVYPFPNVSI 441 (566)
T ss_pred EEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheeccccc-CCccccCCeEEE
Confidence 9999999887532 22334556443 33332211112 2246999863322 2222111111 122233444433
Q ss_pred ecceEEecCCeEEEEEEEECCCCC--eEEEEeCCEeccC
Q psy16863 453 ELEAILTEQGTVSLECKVMGIPTP--QLIWYKDNKKIKA 489 (1075)
Q Consensus 453 ~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~g~~l~~ 489 (1075)
. +..|. ..|.+...|.. .+.|+.++.....
T Consensus 442 ~----FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~ 473 (566)
T PHA03269 442 E----IIDGH---IVCLAKCVPRGVVHFNWWINDIPIEH 473 (566)
T ss_pred E----EeCCE---EEEecccccCCCceEEEEecCCCCCC
Confidence 2 33332 24777766653 8999988877543
No 309
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.59 E-value=0.00055 Score=55.87 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=46.5
Q ss_pred ceeeccCCeEEEEEEEecCC--CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863 358 DIAVKVGTRARLLVEIRSPT--EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~ 427 (1075)
+..+..|++++|.|+....+ .+.|+|+-.+..... .. .....+|.+..+...|+|.++|.++..
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~-~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----IL-NQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----ec-cCCccEEEeceeCcccCCEEEEEEEEC
Confidence 44678999999999995533 459999976643221 11 112235889999999999999999765
No 310
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.59 E-value=0.00086 Score=57.99 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=35.9
Q ss_pred CcEEEEe-cCCeEEEEEceeccCCCeEEEEEEEc-CceeEEEEEEEee
Q psy16863 190 NRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASN-ESGYSTAKFELSV 235 (1075)
Q Consensus 190 ~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n-~~g~~~~~~~l~V 235 (1075)
+|..+.. .-+..+|.|.+++.+|+|.|+|.+.| ..|..+..+.|.|
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 4544432 22346899999999999999999999 6788888888877
No 311
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.56 E-value=0.0003 Score=61.57 Aligned_cols=70 Identities=10% Similarity=0.196 Sum_probs=50.9
Q ss_pred eeeccCCeEEEEEEEec-CCCcEEEEEECCEe-----c--------CCCCcEEEEE--cCCEEEEEEcccCCCCceeEEE
Q psy16863 359 IAVKVGTRARLLVEIRS-PTEIKIHWYRNDRK-----L--------EENKIYRTQH--DGNFYFIDLSSVSLFDSGRWTC 422 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~-----l--------~~~~~~~~~~--~g~~~~L~I~~v~~~d~G~Y~C 422 (1075)
+.+.+|++++|.|.... .....+.|+|.... | ....++.+.. .+....|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 45789999999999854 34678999986421 1 1123454432 3456789999999999999999
Q ss_pred EEEeCC
Q psy16863 423 LAENAV 428 (1075)
Q Consensus 423 ~a~n~~ 428 (1075)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987653
No 312
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.56 E-value=0.0011 Score=58.70 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=47.2
Q ss_pred ceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc-EEEEEcC-C---EEEEEEcccCCCCce-eEEEEEEeCCC
Q psy16863 358 DIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI-YRTQHDG-N---FYFIDLSSVSLFDSG-RWTCLAENAVG 429 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~-~~~~~~g-~---~~~L~I~~v~~~d~G-~Y~C~a~n~~g 429 (1075)
......|+.++|.|.+.| .| ...++|+|||+.+..... .....++ . .+.|.+.. ...|.| .|+|.+.+...
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 334567888999999977 45 579999999999864322 1112232 2 23455553 445555 59999999754
Q ss_pred c
Q psy16863 430 R 430 (1075)
Q Consensus 430 ~ 430 (1075)
.
T Consensus 94 ~ 94 (111)
T cd05772 94 Q 94 (111)
T ss_pred C
Confidence 3
No 313
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.56 E-value=0.00037 Score=62.00 Aligned_cols=70 Identities=20% Similarity=0.397 Sum_probs=47.9
Q ss_pred EeecCCeEEEEEEEecCCCCceEEEEeCCeE---------Ee-------------cCCcEEEE-EcCCceEEEEEeeeee
Q psy16863 561 KAKIGTSAILECQVLVPPWPRSIYWYNKEGV---------VE-------------ASDKYHIM-ADGLGGYSIEINYLEA 617 (1075)
Q Consensus 561 ~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~---------i~-------------~~~~~~~~-~~~~~~~~L~i~~~~~ 617 (1075)
.+.+|++++|.|.+........+.||+.... +. ...++.+. ..+...+.|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 4678999999999876433337999975321 00 01244432 2223467899999999
Q ss_pred cCCceEEEEEECC
Q psy16863 618 VDDGEWKCVATSS 630 (1075)
Q Consensus 618 ~d~G~Y~C~a~n~ 630 (1075)
+|+|.|.|...+.
T Consensus 82 ~Dsg~YyCa~~~~ 94 (107)
T cd07700 82 EDSGTYFCMTVGS 94 (107)
T ss_pred HHCEEEEEeEcCC
Confidence 9999999998643
No 314
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.55 E-value=0.00052 Score=57.28 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=44.2
Q ss_pred EEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCce----EEEEEeeeeecCCceEEEEEECCCCc
Q psy16863 568 AILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG----YSIEINYLEAVDDGEWKCVATSSSGV 633 (1075)
Q Consensus 568 ~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~ 633 (1075)
++|.|.+.+..++..++|+++|..+.............+. ..|.+..-..++...|+|.+.|....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999986556799999999987543222222222122 24666655566778899999987654
No 315
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.53 E-value=0.00034 Score=62.24 Aligned_cols=67 Identities=19% Similarity=0.397 Sum_probs=47.9
Q ss_pred eeccCCeEEEEEEEecC-CCcEEEEEECCEe-----c------C-----------CCCcEEE--EEcCCEEEEEEcccCC
Q psy16863 360 AVKVGTRARLLVEIRSP-TEIKIHWYRNDRK-----L------E-----------ENKIYRT--QHDGNFYFIDLSSVSL 414 (1075)
Q Consensus 360 ~v~~G~~v~l~C~~~g~-p~~~v~W~k~g~~-----l------~-----------~~~~~~~--~~~g~~~~L~I~~v~~ 414 (1075)
.+.+|++++|.|.+.+. ....+.|||.... + . ...++.+ ..++....|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 57899999999998653 3558999984321 0 0 0124433 2345567899999999
Q ss_pred CCceeEEEEEEe
Q psy16863 415 FDSGRWTCLAEN 426 (1075)
Q Consensus 415 ~d~G~Y~C~a~n 426 (1075)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 316
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.53 E-value=0.00035 Score=56.65 Aligned_cols=63 Identities=21% Similarity=0.427 Sum_probs=46.6
Q ss_pred EEEEEEEecCCCCeEEEEECCEEeecCCcE---EEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNV---KILKETLGVCHLKIHALEVADQAEWKCIATNDF 828 (1075)
Q Consensus 766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~ 828 (1075)
+.|.|.+.+.+.+.+.|++++......... ...........|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999998788899999998766433211 011111235689999999999999999999875
No 317
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.52 E-value=0.012 Score=63.28 Aligned_cols=165 Identities=17% Similarity=0.232 Sum_probs=95.8
Q ss_pred EEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC--CcEEEEE
Q psy16863 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT--EIKIHWY 384 (1075)
Q Consensus 308 ~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p--~~~v~W~ 384 (1075)
..|+|..++...+|.|+=+..+..|.......++|.. -.+|.+.. ..-.+.+|++..-.|.+.. .| ...++||
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~--yr~Psvsv--~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST--YNAPLVDL--SVHPSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE--ecCCcccc--cCCccccCCCceEEEEeeeecCCCceEEEEE
Confidence 4699999999999999877656545434444444432 13555433 3345789999999999965 33 4599999
Q ss_pred ECCEecCCCC----cEEEEEcCCE---EEEEEcccCC-CCceeEEEEEEeCCCc-eeeEEEEEeecCCCCCCCeeeeecc
Q psy16863 385 RNDRKLEENK----IYRTQHDGNF---YFIDLSSVSL-FDSGRWTCLAENAVGR-SHCSCELSVLVPKAYKAPFFTKELE 455 (1075)
Q Consensus 385 k~g~~l~~~~----~~~~~~~g~~---~~L~I~~v~~-~d~G~Y~C~a~n~~g~-~~~s~~l~V~~~~~~~~p~~~~~~~ 455 (1075)
+||.++.... ......+|.. ++|++..... +.-=..+|.+.=..+. +.....- .-.|..+.+|.+...
T Consensus 274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsA-t~~P~Vy~~P~Is~~-- 350 (486)
T PHA03273 274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAK-AGTPSVFVAPTVSVT-- 350 (486)
T ss_pred eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccc-cccCccccCCeEEEE--
Confidence 9999987322 2222334432 3454444322 2223789998633222 2211111 112223344444433
Q ss_pred eEEecCCeEEEEEEEECCCC--CeEEEEeCC
Q psy16863 456 AILTEQGTVSLECKVMGIPT--PQLIWYKDN 484 (1075)
Q Consensus 456 ~~~~~g~~v~l~C~~~g~p~--~~v~W~~~g 484 (1075)
+..|. ..|.+...|. ..+.|+.++
T Consensus 351 --F~~G~---AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 351 --VEDGD---AVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred --EeCCE---EEEecccccCCCeeEEEEccC
Confidence 33332 2477777776 589999877
No 318
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.51 E-value=0.0007 Score=58.29 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=43.4
Q ss_pred CCeEEEEEEEecC-C-CcEEEEEECCEecCCCC---cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863 364 GTRARLLVEIRSP-T-EIKIHWYRNDRKLEENK---IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429 (1075)
Q Consensus 364 G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~---~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g 429 (1075)
|+.++|.|.+.|. | ...++|+|+|..+.... ......++.........+...+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 7789999999883 4 35999999997443321 22223344443333334455688899999998754
No 319
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.50 E-value=0.00036 Score=61.54 Aligned_cols=67 Identities=15% Similarity=0.341 Sum_probs=48.7
Q ss_pred eeccCCeEEEEEEEecCCCcEEEEEECCE----e---c---CC------------CCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDR----K---L---EE------------NKIYRTQHDGNFYFIDLSSVSLFDS 417 (1075)
Q Consensus 360 ~v~~G~~v~l~C~~~g~p~~~v~W~k~g~----~---l---~~------------~~~~~~~~~g~~~~L~I~~v~~~d~ 417 (1075)
.+.+|++|+|.|.+.......+.|||... . | .. ..++....+.....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 46789999999998655456799998431 1 1 00 1234444555777899999999999
Q ss_pred eeEEEEEEe
Q psy16863 418 GRWTCLAEN 426 (1075)
Q Consensus 418 G~Y~C~a~n 426 (1075)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999753
No 320
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.49 E-value=0.0011 Score=56.81 Aligned_cols=69 Identities=14% Similarity=0.308 Sum_probs=45.7
Q ss_pred ccCCeEEEEEEEec-CC-CcEEEEEECCEecCCC---CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 362 KVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEEN---KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 362 ~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~---~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
..|+.++|.|.+.| .| ...++|+|||..+... .......+|..+......+...+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 46889999999988 44 5599999999987654 1111223334433222334455666999999987544
No 321
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.43 E-value=0.001 Score=57.01 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=46.2
Q ss_pred CeEEEEEEEecC-CCCeEEEEECCE----Eee-----------c--CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863 764 EEFKFTVQVSIS-PEPKVSWFRDDQ----QVV-----------E--SDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825 (1075)
Q Consensus 764 ~~~~l~C~v~g~-p~p~v~W~k~g~----~i~-----------~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~ 825 (1075)
++++|.|..... ....|+|.|-.. .+. . .+|+.+........+|.|.+++.+|+|.|+|...
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468899998632 345889988421 221 0 1233333222234689999999999999999997
Q ss_pred eC-CceEEEEE
Q psy16863 826 ND-FGQSITSC 835 (1075)
Q Consensus 826 N~-~G~~~~s~ 835 (1075)
+. .|..+..+
T Consensus 81 t~P~g~~~~~i 91 (96)
T cd05889 81 TYPQGSWEKVI 91 (96)
T ss_pred eCCCCCeEEEE
Confidence 64 56654443
No 322
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.42 E-value=0.0023 Score=54.41 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=46.2
Q ss_pred eccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc---EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863 361 VKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI---YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429 (1075)
Q Consensus 361 v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g 429 (1075)
+..|...+|.|.+.| .| ...++|+|||..+. +.. +....+++........+...+...|+|.+.+...
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 345777899999988 33 67999999999986 321 1223345544333334456777799999998643
No 323
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.41 E-value=0.00078 Score=61.24 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=50.6
Q ss_pred ecCceeeccCCeEEEEEEEecCC------CcEEEEEECCE-----e-c--CC---------CCcEEEE--EcCCEEEEEE
Q psy16863 355 RLHDIAVKVGTRARLLVEIRSPT------EIKIHWYRNDR-----K-L--EE---------NKIYRTQ--HDGNFYFIDL 409 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~g~p------~~~v~W~k~g~-----~-l--~~---------~~~~~~~--~~g~~~~L~I 409 (1075)
.|..+.+.+|+.|+|.|...... ...+.|||... . + .. ..|+... .....+.|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 34567889999999999875322 35799998532 1 0 00 1244442 2344568999
Q ss_pred cccCCCCceeEEEEEEeC
Q psy16863 410 SSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 410 ~~v~~~d~G~Y~C~a~n~ 427 (1075)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 324
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.41 E-value=0.002 Score=52.71 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=45.8
Q ss_pred eeecCCeEEEEEEEecCCC--CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863 759 QATVNEEFKFTVQVSISPE--PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~ 827 (1075)
.+..|++++|+|.....+. +.|+|+-.+.... +.. ..+...|.+.++...|+|.++|.++-+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~--~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QIL--NQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eec--cCCccEEEeceeCcccCCEEEEEEEEC
Confidence 4778999999999965444 4999987654322 111 123448999999999999999999744
No 325
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.39 E-value=0.0021 Score=54.95 Aligned_cols=68 Identities=13% Similarity=0.278 Sum_probs=43.8
Q ss_pred ccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC---cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863 362 KVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK---IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429 (1075)
Q Consensus 362 ~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~---~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g 429 (1075)
..|+..+|.|.+.| .| ...++|.|||..+..+. ......++.........+...+...|+|.+.+...
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWGL 85 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCCC
Confidence 34667899999988 44 67999999999886542 12223344433222222334566699999998743
No 326
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.39 E-value=0.03 Score=59.04 Aligned_cols=168 Identities=15% Similarity=0.208 Sum_probs=93.6
Q ss_pred eEEEEEcccCCCCCEEEEEEEEeCCee--EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC--CcEE
Q psy16863 307 RTELNIRRVRRDDGGRYSVTASNESGY--STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT--EIKI 381 (1075)
Q Consensus 307 ~~~L~I~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p--~~~v 381 (1075)
...|.|.++...++|.|.....+.... ..+...+.+.. .||.+... .-.+..|++..-.|.+.. .| ...+
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~Svrl 280 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---RPASVDVL--APPVLSGENYKASCIVRHFYPPGSVYV 280 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe---cCCCcccc--CCccccCCCceEEEEeeeecCCCceEE
Confidence 447999999999999887666653332 33344444443 35544332 235779999999999965 33 4589
Q ss_pred EEEECCEecCCCCcEEEE------EcCCE--EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeee
Q psy16863 382 HWYRNDRKLEENKIYRTQ------HDGNF--YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453 (1075)
Q Consensus 382 ~W~k~g~~l~~~~~~~~~------~~g~~--~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~ 453 (1075)
+||+||.++......... .++.. ++|.+.+...+.-=..+|.+.=..+....+. -..-.|..+.+|.+...
T Consensus 281 rWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r-nAaatP~VY~~P~ISv~ 359 (490)
T PHA03271 281 SWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT-NATAIPTVYHHPRISLA 359 (490)
T ss_pred EEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee-ecccCCccccCCeEEEE
Confidence 999999887554321111 11222 2333333222222378999864333222121 11112333444444332
Q ss_pred cceEEecCCeEEEEEEEECCCCC-eEEEEeCCEec
Q psy16863 454 LEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKI 487 (1075)
Q Consensus 454 ~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~l 487 (1075)
+..|.- .|.+...|.. .+.|+-++...
T Consensus 360 ----FedG~A---VCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 360 ----FKDGYA---ICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred ----EeCCEE---EEeccccCCCcEEEEEecCCCC
Confidence 333332 3666655543 89999877654
No 327
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.36 E-value=0.011 Score=63.51 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=56.6
Q ss_pred EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCC---eEEEE
Q psy16863 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP---QLIWY 481 (1075)
Q Consensus 405 ~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~v~W~ 481 (1075)
..|+|..++..++|.|+-...+..|.......++|.. +.+|.+..... .+.+|+...-.|.+..+-++ .++||
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~---yr~Psvsv~~~-PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST---YNAPLVDLSVH-PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE---ecCCcccccCC-ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 3589999999999999988766655544445555532 22333333322 25689999999999875443 89999
Q ss_pred eCCEecc
Q psy16863 482 KDNKKIK 488 (1075)
Q Consensus 482 ~~g~~l~ 488 (1075)
+||.++.
T Consensus 274 ~dg~~V~ 280 (486)
T PHA03273 274 KNAKEVD 280 (486)
T ss_pred eCCeecc
Confidence 9999987
No 328
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.35 E-value=0.00057 Score=60.28 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=46.8
Q ss_pred eecCCeEEEEEEEecCCCCeEEEEECC----EE---ee---c------------CCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863 760 ATVNEEFKFTVQVSISPEPKVSWFRDD----QQ---VV---E------------SDNVKILKETLGVCHLKIHALEVADQ 817 (1075)
Q Consensus 760 ~~~g~~~~l~C~v~g~p~p~v~W~k~g----~~---i~---~------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 817 (1075)
+.+|++++|.|.+.......+.|||.. .. |. . ..++..... ...+.|+|.+++.+|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS-SNSFVLTLKNFQKENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec-CCEEEEEECCCCHHHC
Confidence 678999999999875545679999843 11 11 0 122333222 3577899999999999
Q ss_pred eEEEEEEEe
Q psy16863 818 AEWKCIATN 826 (1075)
Q Consensus 818 G~Y~C~A~N 826 (1075)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998864
No 329
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.35 E-value=0.0012 Score=56.53 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=46.3
Q ss_pred CeEEEEEEEecCCCCceEEEEeCCe----EEe-------------cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE
Q psy16863 566 TSAILECQVLVPPWPRSIYWYNKEG----VVE-------------ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628 (1075)
Q Consensus 566 ~~~~L~C~~~~~p~p~~v~W~~~~~----~i~-------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 628 (1075)
+.++|.|.....+.-..|+|.|... .+. -.+|..+...+.+..+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 3689999987555445899988532 111 01233443333445689999999999999999975
Q ss_pred C-CCCcee
Q psy16863 629 S-SSGVKQ 635 (1075)
Q Consensus 629 n-~~g~~~ 635 (1075)
+ ..|...
T Consensus 81 tfP~G~~~ 88 (96)
T cd05887 81 TFPLGNTQ 88 (96)
T ss_pred eCCCCCee
Confidence 4 556644
No 330
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.34 E-value=0.00097 Score=54.66 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=42.4
Q ss_pred EEEEEEEecC-CC-CeEEEEECCEEeecCCc-EEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeC
Q psy16863 766 FKFTVQVSIS-PE-PKVSWFRDDQQVVESDN-VKILKETLG----VCHLKIHALEVADQAEWKCIATND 827 (1075)
Q Consensus 766 ~~l~C~v~g~-p~-p~v~W~k~g~~i~~~~~-~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~ 827 (1075)
++|.|.+.|. |. ..++|+|||+++..+.. .....+.++ .+.|.|.....++...|+|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999985 54 69999999997543211 111112222 345777776778899999999865
No 331
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.32 E-value=0.0014 Score=56.01 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=46.0
Q ss_pred CCeEEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 763 NEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 763 g~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
|+.+.|+|.+. |+|.|.|+|+.++..+.............+ .+.|.+..-..++...++|.|.|..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 78999999765 589999999999988721111111111111 346777766677899999999997644
No 332
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.30 E-value=0.038 Score=58.31 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=51.1
Q ss_pred EEEEEcccCCCCceeEEEEEEeCCCce--eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCC---eEE
Q psy16863 405 YFIDLSSVSLFDSGRWTCLAENAVGRS--HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP---QLI 479 (1075)
Q Consensus 405 ~~L~I~~v~~~d~G~Y~C~a~n~~g~~--~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~v~ 479 (1075)
..|.|.++...|+|.|.....+..... .+...+.+... +|.+..... .+.+|+...-.|.+..+-++ .++
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~R----PPsVsV~a~-PVL~Ge~YkAtC~vAnYYPP~Svrlr 281 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQR----PASVDVLAP-PVLSGENYKASCIVRHFYPPGSVYVS 281 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEec----CCCccccCC-ccccCCCceEEEEeeeecCCCceEEE
Confidence 468999999999997755554433322 23333333322 233332222 25689999999999875444 889
Q ss_pred EEeCCEecc
Q psy16863 480 WYKDNKKIK 488 (1075)
Q Consensus 480 W~~~g~~l~ 488 (1075)
||+||.++.
T Consensus 282 Wf~nG~~V~ 290 (490)
T PHA03271 282 WRQNGNIAT 290 (490)
T ss_pred EEeCCcccc
Confidence 999998874
No 333
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.29 E-value=0.0003 Score=53.64 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=37.0
Q ss_pred CCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEeC
Q psy16863 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNC 915 (1075)
Q Consensus 860 ~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N~ 915 (1075)
.|.+|+|+|...+. .++|+||+..+...+...|....+ .++|.|+|.|.|.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~~~~~~~~--e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEKYLSLNHF--SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCCCceEEeeccC--CCCceEEEEeCCC
Confidence 58899999987533 299999997776544444443333 6699999999753
No 334
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.27 E-value=0.002 Score=52.86 Aligned_cols=63 Identities=17% Similarity=0.402 Sum_probs=41.8
Q ss_pred eEEEEEEEecC-C-CcEEEEEECCEecCCCCc---EEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCC
Q psy16863 366 RARLLVEIRSP-T-EIKIHWYRNDRKLEENKI---YRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAV 428 (1075)
Q Consensus 366 ~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~ 428 (1075)
.++|.|.+.|. | .+.++|+|||+++..+.. .....+|.. +.|.|.....++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899999884 4 479999999997544321 111234433 246665555567779999998864
No 335
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.27 E-value=0.0011 Score=53.46 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=46.5
Q ss_pred EEEEEEEecCCCcEEEEEECCEecCCCCcE----EEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIY----RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV 428 (1075)
Q Consensus 367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~----~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~ 428 (1075)
+.|.|.+.+.+...+.|++++......... ..........|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999988778899999998776543321 11122344578999999999999999998875
No 336
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.24 E-value=0.0024 Score=54.58 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCeEEEEEEE-ecCCCcEEEEEECCEecCCCCc-EEEEEc-CC---EEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 364 GTRARLLVEI-RSPTEIKIHWYRNDRKLEENKI-YRTQHD-GN---FYFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 364 G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~-~~~~~~-g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
|+.+.|.|.+ .|.|++.|+|+.++..+..... .....+ +. .+.|.+..-..++...++|.|.|....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 7899999987 5689999999999988722111 111222 22 235666554444556999999998654
No 337
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.24 E-value=0.0018 Score=55.69 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=41.7
Q ss_pred CCeEEEEEEEecC-CCC-eEEEEECCEEeecCCc-EEEEEeeCcEEEE-EEccccCCCCeEEEEEEEeCC
Q psy16863 763 NEEFKFTVQVSIS-PEP-KVSWFRDDQQVVESDN-VKILKETLGVCHL-KIHALEVADQAEWKCIATNDF 828 (1075)
Q Consensus 763 g~~~~l~C~v~g~-p~p-~v~W~k~g~~i~~~~~-~~~~~~~~~~~~L-~I~~~~~~D~G~Y~C~A~N~~ 828 (1075)
++.++|.|.+.|. |.. .++|+|+|+.+..+.. -....+.++.+.+ ....+...|.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999995 543 8999999974432211 1222233333321 223344458999999998764
No 338
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.22 E-value=0.0012 Score=57.52 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=46.9
Q ss_pred ceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC---cEEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCC
Q psy16863 358 DIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK---IYRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVG 429 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~---~~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g 429 (1075)
......++.++|.|.+.| .| ...|+|+|||.++..+. ......+|... .|.+..-...+...|+|.+.+...
T Consensus 11 ~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 11 SEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 334556788999999987 45 77999999999985431 11112245443 344443333345699999998754
No 339
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.22 E-value=0.0018 Score=58.50 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=49.0
Q ss_pred eeeeecCCeEEEEEEEecCC--CCeEEEEECC---EE--e---ec-----------CCcEEEEEee-CcEEEEEEccccC
Q psy16863 757 SCQATVNEEFKFTVQVSISP--EPKVSWFRDD---QQ--V---VE-----------SDNVKILKET-LGVCHLKIHALEV 814 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g---~~--i---~~-----------~~~~~~~~~~-~~~~~L~I~~~~~ 814 (1075)
...+..|++++|.|...+.- ...+.|||-. .+ | .. .+++...... ...+.|+|.+++.
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 34578999999999987543 4579999832 12 1 00 1345554333 2356899999999
Q ss_pred CCCeEEEEEEEe
Q psy16863 815 ADQAEWKCIATN 826 (1075)
Q Consensus 815 ~D~G~Y~C~A~N 826 (1075)
+|+|.|-|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998865
No 340
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.21 E-value=0.0025 Score=57.90 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=48.9
Q ss_pred cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCc-----------------eeccCcEEEE--ecCCeEE
Q psy16863 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH-----------------PIFGNRFRAI--NRDGRTE 202 (1075)
Q Consensus 142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~-----------------~~~~~~~~~~--~~~~~~~ 202 (1075)
++.+.+.+|+.++|.|....+..+ .......+.|++.... ....+|+... ...+.+.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~----~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s 81 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADW----PVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCS 81 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccc----cCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEE
Confidence 355678899999999987643210 0001123445543210 1122466553 2455689
Q ss_pred EEEceeccCCCeEEEEEEEcC
Q psy16863 203 LNIRRVRRDDGGRYSVTASNE 223 (1075)
Q Consensus 203 L~I~~~~~~D~G~Y~C~a~n~ 223 (1075)
|+|.+++.+|+|.|.|.+...
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccCChhhCeEEEEEEEcC
Confidence 999999999999999988654
No 341
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.21 E-value=0.00061 Score=52.24 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEe
Q psy16863 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHN 914 (1075)
Q Consensus 861 g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N 914 (1075)
.++|.|+|.+ .-+|+|+| |..+......++.+......-.|.|.|.++|
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 4589999976 24599999 6666554455565544333346999999988
No 342
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.18 E-value=0.043 Score=59.18 Aligned_cols=207 Identities=15% Similarity=0.167 Sum_probs=107.2
Q ss_pred eEEEEEceeccCCCeEEEEEEEcCc-eeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEec
Q psy16863 200 RTELNIRRVRRDDGGRYSVTASNES-GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDL 278 (1075)
Q Consensus 200 ~~~L~I~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~ 278 (1075)
...|+|.+++..++|.|+=.+.+.. +.......++|... .+|.+ .+....+.+|+.-.-.|.+..- ..
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y--r~PsV--sV~p~PVL~Ge~YkAtC~vA~Y-------YP 356 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY--KRPNI--TVIGDPVLLGNPYAAYCKVNKY-------YP 356 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe--cCCCc--cccCCccccCCCceEEEEeeee-------cC
Confidence 4579999999999999987765422 23333333444322 33433 3344457789999888877631 22
Q ss_pred CCCeeeEEecCCCcccc---CCCeEEEeeCCeE---EEEEcccCCCC--CEEEEEEEEeCCee-EEEEEEEEEecCCCCC
Q psy16863 279 NNTIPFSFRAQGDHPIF---GNRFRAINRDGRT---ELNIRRVRRDD--GGRYSVTASNESGY-STAKFELSVESQVPDA 349 (1075)
Q Consensus 279 ~~~~~~~w~~~~~~~~~---~~~~~~~~~~~~~---~L~I~~~~~~d--~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~ 349 (1075)
..+..+.|+.+++.+.. .+.++...+|... +|++......| --..+|.+.-..+. ......-.+...+-.+
T Consensus 357 p~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~ 436 (566)
T PHA03269 357 PHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPF 436 (566)
T ss_pred CCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccC
Confidence 45778889888666553 2223333344332 34432221111 23569999753332 2222222222111234
Q ss_pred CeeeeecCceeeccCCeEEEEEEEecCC--CcEEEEEECCEecCCCCcEEEEE--cCCEEEEEEcc---cCCCCc-eeEE
Q psy16863 350 PAFIRRLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRNDRKLEENKIYRTQH--DGNFYFIDLSS---VSLFDS-GRWT 421 (1075)
Q Consensus 350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g~~l~~~~~~~~~~--~g~~~~L~I~~---v~~~d~-G~Y~ 421 (1075)
|.+. +.+..|.- -|.+.--| ...+.|+-++....... ..+.. .+......|.+ +..+|. -+|+
T Consensus 437 PtIS-----m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~~~~~-t~itG~C~ehPGLVNLRS~~pLS~~dgpveYT 507 (566)
T PHA03269 437 PNVS-----IEIIDGHI---VCLAKCVPRGVVHFNWWINDIPIEHEN-SEILGVCDNNKRFVNLQSSCDTSELDGPITYS 507 (566)
T ss_pred CeEE-----EEEeCCEE---EEecccccCCCceEEEEecCCCCCCcc-ceeeccCCCCCCceeecccccccccCCceeEE
Confidence 4443 33444432 36654443 35899998887643332 22221 11111234444 333332 3899
Q ss_pred EEEEe
Q psy16863 422 CLAEN 426 (1075)
Q Consensus 422 C~a~n 426 (1075)
|.+.-
T Consensus 508 CrL~G 512 (566)
T PHA03269 508 CHLDG 512 (566)
T ss_pred EEEee
Confidence 99863
No 343
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.14 E-value=0.0028 Score=54.28 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=43.3
Q ss_pred cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC---cEEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK---IYRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~---~~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
.++.++|.|.+.| .| ...|+|+|||..+..+. ......++... .|.|..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4567999999988 44 57999999999874321 11122333322 3444433333556999999987544
No 344
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.14 E-value=0.0026 Score=54.52 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=43.4
Q ss_pred CeEEEEEEE-ecCCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863 764 EEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQS 831 (1075)
Q Consensus 764 ~~~~l~C~v-~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 831 (1075)
....+.|.+ .|+|.+.|+|+++. ............++ .+.|.+.....+|.-.|+|+|.|..-..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 457789998 47899999999971 11111111111122 3478887778888999999999986443
No 345
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.13 E-value=0.0027 Score=56.40 Aligned_cols=76 Identities=12% Similarity=0.320 Sum_probs=48.3
Q ss_pred CceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc---EEEEEc-CCE---EEEEEcccCCCC-ceeEEEEEEe
Q psy16863 357 HDIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI---YRTQHD-GNF---YFIDLSSVSLFD-SGRWTCLAEN 426 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~---~~~~~~-g~~---~~L~I~~v~~~d-~G~Y~C~a~n 426 (1075)
....+.+++.++|.|.+.| .| ...|+|+|||..+..+.. .....+ |.. +.|.|..-...+ ...|+|.+.+
T Consensus 11 s~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H 90 (115)
T cd05769 11 SEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQF 90 (115)
T ss_pred ChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEE
Confidence 3444556788999999987 44 469999999998865422 122222 332 245555433334 4599999998
Q ss_pred CCCcee
Q psy16863 427 AVGRSH 432 (1075)
Q Consensus 427 ~~g~~~ 432 (1075)
......
T Consensus 91 ~g~~~~ 96 (115)
T cd05769 91 YGGTDT 96 (115)
T ss_pred eCCccc
Confidence 855443
No 346
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.11 E-value=0.0015 Score=54.79 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=41.5
Q ss_pred eEEEEEEEecCCCC--eEEEEECCE-----Eee-------------cCCcEEEEEee-CcEEEEEEccccCCCCeEEEEE
Q psy16863 765 EFKFTVQVSISPEP--KVSWFRDDQ-----QVV-------------ESDNVKILKET-LGVCHLKIHALEVADQAEWKCI 823 (1075)
Q Consensus 765 ~~~l~C~v~g~p~p--~v~W~k~g~-----~i~-------------~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~ 823 (1075)
++.|.|.+.....+ .+.|+|... .+. ...++.+.... .+...|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998865543 899998541 111 12345544432 5678999999999999999996
No 347
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.11 E-value=0.004 Score=52.28 Aligned_cols=69 Identities=14% Similarity=0.326 Sum_probs=46.1
Q ss_pred ccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEE--E-EEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 362 KVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYR--T-QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 362 ~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~--~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
..++.++|.|.+.+ .| ...|+|+++|..+....... . ..+|.........+...+...|+|.+.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence 34899999999987 44 56999999999987654322 1 23444432222233355666999999988654
No 348
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.10 E-value=0.0025 Score=55.59 Aligned_cols=71 Identities=14% Similarity=0.325 Sum_probs=44.6
Q ss_pred eeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcE--EEEE----cCCEE---EEEEcccCCCCceeEEEEEEeC
Q psy16863 359 IAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIY--RTQH----DGNFY---FIDLSSVSLFDSGRWTCLAENA 427 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~--~~~~----~g~~~---~L~I~~v~~~d~G~Y~C~a~n~ 427 (1075)
..+..|..++|.|.+.| .| ...++|+|||+++...... .... +|... .|.|..-...+...|+|.+.+.
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 34455788999999988 33 5688999999987643211 1111 24333 4545332223455899999987
Q ss_pred CC
Q psy16863 428 VG 429 (1075)
Q Consensus 428 ~g 429 (1075)
..
T Consensus 91 ~l 92 (102)
T cd05768 91 AL 92 (102)
T ss_pred CC
Confidence 54
No 349
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.09 E-value=0.0025 Score=57.52 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=50.0
Q ss_pred cCceeeccCCeEEEEEEEecCC--CcEEEEEECC--E-e--c---C-----------CCCcEEEEEcC--CEEEEEEccc
Q psy16863 356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--R-K--L---E-----------ENKIYRTQHDG--NFYFIDLSSV 412 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~-~--l---~-----------~~~~~~~~~~g--~~~~L~I~~v 412 (1075)
+....+.+|++++|.|...+.. ...+.|||-. + + | . ...++....+. ....|+|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4556789999999999985432 4579999832 1 1 1 0 01345454333 4557999999
Q ss_pred CCCCceeEEEEEEe
Q psy16863 413 SLFDSGRWTCLAEN 426 (1075)
Q Consensus 413 ~~~d~G~Y~C~a~n 426 (1075)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998864
No 350
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.09 E-value=0.0016 Score=55.93 Aligned_cols=74 Identities=8% Similarity=0.151 Sum_probs=44.4
Q ss_pred CceeeccCCeEEEEEEEecC--C-CcEEEEEECCEec-CCC-CcEEEEEcCCEEEEEEcccCCC---CceeEEEEEEeCC
Q psy16863 357 HDIAVKVGTRARLLVEIRSP--T-EIKIHWYRNDRKL-EEN-KIYRTQHDGNFYFIDLSSVSLF---DSGRWTCLAENAV 428 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g~--p-~~~v~W~k~g~~l-~~~-~~~~~~~~g~~~~L~I~~v~~~---d~G~Y~C~a~n~~ 428 (1075)
+...+..|+.++|.|.+.|. | ...|+|+|||+.. ... .......+|.........+..+ +.-.|+|.+.+..
T Consensus 7 s~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 7 SPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred CHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 34456678999999999886 4 5699999997533 211 1112223444432222223333 3348999999875
Q ss_pred Cc
Q psy16863 429 GR 430 (1075)
Q Consensus 429 g~ 430 (1075)
..
T Consensus 87 l~ 88 (96)
T cd07696 87 LP 88 (96)
T ss_pred CC
Confidence 43
No 351
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.05 E-value=0.0052 Score=54.41 Aligned_cols=68 Identities=16% Similarity=0.312 Sum_probs=44.4
Q ss_pred eeecCCeEEEEEEEec-CC-CCeEEEEECCEEeecCCcEEEEEeeCc-----EEEEEEccccCCCCe-EEEEEEEeCC
Q psy16863 759 QATVNEEFKFTVQVSI-SP-EPKVSWFRDDQQVVESDNVKILKETLG-----VCHLKIHALEVADQA-EWKCIATNDF 828 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g-~p-~p~v~W~k~g~~i~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G-~Y~C~A~N~~ 828 (1075)
....|+.++|.|.+.| .| ...++|+|||+.+..... ......++ .+.|.+.. ...|.| .|+|.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 3457888999999998 46 369999999999864322 12222222 23466654 444444 5999998864
No 352
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.01 E-value=0.0046 Score=52.93 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=44.5
Q ss_pred cCCeEEEEEEEec-CCC-CeEEEEECCEEeecCC-cEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 762 VNEEFKFTVQVSI-SPE-PKVSWFRDDQQVVESD-NVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 762 ~g~~~~l~C~v~g-~p~-p~v~W~k~g~~i~~~~-~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
.+..+.|.|.+.| .|. ..|+|+|||+.+..+. ........++ .+.|.|......+...|+|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4466899999998 464 6899999999873221 1011111222 235666655556788999999876433
No 353
>KOG1480|consensus
Probab=96.93 E-value=0.00025 Score=79.79 Aligned_cols=184 Identities=20% Similarity=0.277 Sum_probs=111.6
Q ss_pred CCCccccccccceeeccceeEEEEEecCCCce--EEEEecCCCeeeEEecCCC--ccccCCCeEEEeeCC---eEEEEEc
Q psy16863 241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI--KCQFDLNNTIPFSFRAQGD--HPIFGNRFRAINRDG---RTELNIR 313 (1075)
Q Consensus 241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~--~c~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~---~~~L~I~ 313 (1075)
..|.|+..+.+..+..+.++.++|...+.+.+ +|.- . |..... .....+.. ++- .....|.
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~------~--wv~~~~~~~~~~~d~t----sg~~~~~~si~Is 90 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNS------E--WVHQSRHEKLEGTDET----SGLGVREVSIDIS 90 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccCh------h--hhcCccceeeeccCcc----cceeEEeeeeeee
Confidence 34678888888889999999999998876543 2321 1 111111 11100000 010 0123344
Q ss_pred ccCCCCCE---EE--EEEEEeCCee-EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEE-ecCCCcEEEEEEC
Q psy16863 314 RVRRDDGG---RY--SVTASNESGY-STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRN 386 (1075)
Q Consensus 314 ~~~~~d~G---~Y--~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~ 386 (1075)
.-..++.| .| .|.|....|. .+..+.+.+.+ ..-.|...+.-..|..+....|.|.. .+.|...++|+|+
T Consensus 91 r~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay---~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~ 167 (909)
T KOG1480|consen 91 RQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAY---LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKN 167 (909)
T ss_pred hhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHH---HHHhhccChhhheecccccccccccCcccchhhhhhcccc
Confidence 33333333 45 5666666663 12222222221 12235555666788889999999986 6788899999999
Q ss_pred CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee-eEEEEEeecC
Q psy16863 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVP 442 (1075)
Q Consensus 387 g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~ 442 (1075)
+..+.+...+....+.+ |.|..+...|.|+|+|+|.|..+... ..+.+.|.+.
T Consensus 168 e~~~~pd~n~~~~~d~~---li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~ 221 (909)
T KOG1480|consen 168 EVVIDPDANVIRASDHN---LIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVN 221 (909)
T ss_pred CCCCCccccchhhhcCC---ccccchhhhhcccceeeeehhhccccccceEEEEEEc
Confidence 99888765555555544 78899999999999999999877653 3444555443
No 354
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.90 E-value=0.007 Score=51.88 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=44.2
Q ss_pred CeEEEEEEEecCCCCceEEEEeCCe----EEe-----------c--CCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE
Q psy16863 566 TSAILECQVLVPPWPRSIYWYNKEG----VVE-----------A--SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628 (1075)
Q Consensus 566 ~~~~L~C~~~~~p~p~~v~W~~~~~----~i~-----------~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 628 (1075)
+.++|.|.......-..++|.|.+. .+. . .+|..+........+|.|.+++.+|+|.|+|...
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4688999986543334788988532 111 0 1233333222234689999999999999999986
Q ss_pred CC-CCce
Q psy16863 629 SS-SGVK 634 (1075)
Q Consensus 629 n~-~g~~ 634 (1075)
.. .|..
T Consensus 81 t~P~g~~ 87 (96)
T cd05889 81 TYPQGSW 87 (96)
T ss_pred eCCCCCe
Confidence 54 4553
No 355
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.87 E-value=0.0033 Score=52.62 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=41.0
Q ss_pred eEEEEEEEecCCC--cEEEEEECCE--e---c-------------CCCCcEEEEEc--CCEEEEEEcccCCCCceeEEEE
Q psy16863 366 RARLLVEIRSPTE--IKIHWYRNDR--K---L-------------EENKIYRTQHD--GNFYFIDLSSVSLFDSGRWTCL 423 (1075)
Q Consensus 366 ~v~l~C~~~g~p~--~~v~W~k~g~--~---l-------------~~~~~~~~~~~--g~~~~L~I~~v~~~d~G~Y~C~ 423 (1075)
+++|.|.+..... ..+.|++... . + ....++.+... .....|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999876544 3899998541 1 1 01234444443 5667899999999999999996
Q ss_pred E
Q psy16863 424 A 424 (1075)
Q Consensus 424 a 424 (1075)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 356
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.85 E-value=0.0028 Score=55.26 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=45.3
Q ss_pred eecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCc-EEEEEcCCceE----EEEEeeeeecCCceEEEEEECCCC
Q psy16863 562 AKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDK-YHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSSG 632 (1075)
Q Consensus 562 v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~-~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g 632 (1075)
...++.++|.|.+.+. |....++|+++|..+..+.. .....++.+.| .|.+..-..++...|+|.+.+...
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 4457889999999984 54668999999988743211 11122222333 344544444457889999998653
No 357
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.85 E-value=0.0058 Score=52.22 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=42.5
Q ss_pred CeEEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863 764 EEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 764 ~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
..+.+.|.+. |.|.+.|+|+++.... .........++ .+.|.+.....+|.-.|+|+|.|..-.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 4578999876 6899999999982111 11111111111 346888777788999999999997644
No 358
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.84 E-value=0.01 Score=50.59 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=46.1
Q ss_pred ecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEE-EeeeeecCCceEEEEEECCC
Q psy16863 563 KIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE-INYLEAVDDGEWKCVATSSS 631 (1075)
Q Consensus 563 ~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~-i~~~~~~d~G~Y~C~a~n~~ 631 (1075)
..|+..+|.|.+.+ .|....++|+++|..+..........++.+.|.+. ...+...+...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 34777899999998 56666899999999875211122334444444432 22355677888999999854
No 359
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.80 E-value=0.0031 Score=54.22 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=43.2
Q ss_pred EeecCCeEEEEEEEecC--CCCceEEEEeCCeEEecCCcEEEEEcCCceEE----EEEeeeeecCCceEEEEEECCCC
Q psy16863 561 KAKIGTSAILECQVLVP--PWPRSIYWYNKEGVVEASDKYHIMADGLGGYS----IEINYLEAVDDGEWKCVATSSSG 632 (1075)
Q Consensus 561 ~v~~G~~~~L~C~~~~~--p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~a~n~~g 632 (1075)
.+..|+.++|.|.+.+. |....++|.++++.......-....++.+.|. |.+..-...+.-.|+|.+.+...
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 35568999999999998 76678999998754321100011122222332 33433333345569999998753
No 360
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.80 E-value=0.8 Score=48.41 Aligned_cols=121 Identities=12% Similarity=0.197 Sum_probs=75.9
Q ss_pred CceeeccCCeEEEEEEEec--C-CCcEEEEEECCEecCC-----------------CCcEEEEEc------CCEEEEEEc
Q psy16863 357 HDIAVKVGTRARLLVEIRS--P-TEIKIHWYRNDRKLEE-----------------NKIYRTQHD------GNFYFIDLS 410 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~g--~-p~~~v~W~k~g~~l~~-----------------~~~~~~~~~------g~~~~L~I~ 410 (1075)
....+..|..+.|.|.++- + ....++|+--|-++.+ ...+.+... -..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 4566778999999999854 2 2458899987755431 223333322 134689999
Q ss_pred ccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCC-eEEEEEEEECC--CCCeEEEEeCCEec
Q psy16863 411 SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGI--PTPQLIWYKDNKKI 487 (1075)
Q Consensus 411 ~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~-~v~l~C~~~g~--p~~~v~W~~~g~~l 487 (1075)
++..+.+|-|+|+|....-...+..=|.|.... .|.. ..+|. .....|.+-.. .++.+.|.-+|...
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V-----~f~W-----~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~ 421 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADHV-----FFKW-----NTEGDNETKVACYAAQYDMQPFSILWKSNGVSF 421 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccEE-----EEEE-----EeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence 999999999999998754333333333333210 1111 23443 46678987644 34579999888654
No 361
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.77 E-value=0.0037 Score=54.57 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=43.7
Q ss_pred eecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcEE--EEEc--CCceEE----EEEeeeeecCCceEEEEEECCCC
Q psy16863 562 AKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKYH--IMAD--GLGGYS----IEINYLEAVDDGEWKCVATSSSG 632 (1075)
Q Consensus 562 v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~~--~~~~--~~~~~~----L~i~~~~~~d~G~Y~C~a~n~~g 632 (1075)
+..|..++|.|.+.|. |....++|++++..+....... ...+ +.+.|. |.|..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 3347889999999984 5455889999998865332111 1111 123333 44433333456789999998654
No 362
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.76 E-value=0.0076 Score=51.61 Aligned_cols=67 Identities=12% Similarity=0.293 Sum_probs=42.2
Q ss_pred eeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc-EEEEEcCCEE----EEEEcccCCCCce-eEEEEEEeCC
Q psy16863 359 IAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI-YRTQHDGNFY----FIDLSSVSLFDSG-RWTCLAENAV 428 (1075)
Q Consensus 359 ~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~-~~~~~~g~~~----~L~I~~v~~~d~G-~Y~C~a~n~~ 428 (1075)
..+..+..++|.|.+.| .| ...++|.|||..+..+.. .....+++.+ .|.| +.++.| .|+|.+.+..
T Consensus 11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~v---t~~~~~~~ysC~V~H~g 85 (96)
T cd07697 11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTV---TKDSLGKKFRCIYKHEG 85 (96)
T ss_pred HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEE---CchhCCCeEEEEEEECC
Confidence 34445678999999988 34 679999999998754421 1122233333 3333 343334 5999999854
No 363
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.73 E-value=0.012 Score=50.39 Aligned_cols=68 Identities=9% Similarity=0.035 Sum_probs=41.4
Q ss_pred CeEEEEEEE-ecCCCcEEEEEECCEecCCCCcE--EEEEcCC---EEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863 365 TRARLLVEI-RSPTEIKIHWYRNDRKLEENKIY--RTQHDGN---FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435 (1075)
Q Consensus 365 ~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~--~~~~~g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~ 435 (1075)
....+.|.+ .|.|+++|+|+++. ...... ....+|. .+.|.+.....+|.-.|+|++.|..-......
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~ 89 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRF 89 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 356788998 67999999999972 111111 1222333 23566654444444599999999875544333
No 364
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.70 E-value=0.0045 Score=47.64 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=38.3
Q ss_pred cCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863 460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514 (1075)
Q Consensus 460 ~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~d~G~Y~C~a~n 514 (1075)
..++|.|.|.+ ...|+|++ |..+......+|.+.....+-.|.|.|.+++
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 35689999965 24699999 6666555466777777777778999999987
No 365
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.63 E-value=0.023 Score=47.71 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=46.0
Q ss_pred cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEE-cCCceEEEE-EeeeeecCCceEEEEEECCCCc
Q psy16863 564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMA-DGLGGYSIE-INYLEAVDDGEWKCVATSSSGV 633 (1075)
Q Consensus 564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~-~~~~~~~L~-i~~~~~~d~G~Y~C~a~n~~g~ 633 (1075)
.++.++|.|.+.+ .|....|.|++++..+.......... ++.+.|.+. ...+...+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence 3889999999997 45566899999999875443322221 233444322 2233366777899999987654
No 366
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.61 E-value=0.015 Score=50.00 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=45.5
Q ss_pred ecCCeEEEEEEEec-CCCCceEEEEeCCeEEecC-CcEEEEEcCCceEEE-EEeeeeecCCceEEEEEECCCCc
Q psy16863 563 KIGTSAILECQVLV-PPWPRSIYWYNKEGVVEAS-DKYHIMADGLGGYSI-EINYLEAVDDGEWKCVATSSSGV 633 (1075)
Q Consensus 563 ~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~-~~~~~~~~~~~~~~L-~i~~~~~~d~G~Y~C~a~n~~g~ 633 (1075)
..|+.++|.|.+.+ .|....++|+++|..+... .......++.+.+.+ ..-.+...+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 35889999999998 4555589999999887543 111223333333332 12234455677899999987543
No 367
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.61 E-value=0.023 Score=48.61 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=43.4
Q ss_pred cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCc-EEEEEcCCceEEEE-EeeeeecCCceEEEEEECCC
Q psy16863 564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDK-YHIMADGLGGYSIE-INYLEAVDDGEWKCVATSSS 631 (1075)
Q Consensus 564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~-~~~~~~~~~~~~L~-i~~~~~~d~G~Y~C~a~n~~ 631 (1075)
.|+..+|.|.+.| .|....++|.++|..+..+.. .....++.+.|.+. .-.+.+.+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 4667899999998 566678999999988754321 12233333334321 11234456778999998864
No 368
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.60 E-value=0.0094 Score=50.94 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=43.8
Q ss_pred eEEEEEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCC---EEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863 366 RARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGN---FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438 (1075)
Q Consensus 366 ~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 438 (1075)
...+.|.+ .|.|++.|+|+++...... .......+|. .+.|.+.....+|.-.|+|++.|..-.......+.
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 56789987 5789999999998321110 1111223444 23566655444455599999999876555444443
No 369
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.58 E-value=0.0042 Score=47.52 Aligned_cols=51 Identities=27% Similarity=0.427 Sum_probs=36.1
Q ss_pred ecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863 459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514 (1075)
Q Consensus 459 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~d~G~Y~C~a~n 514 (1075)
..|.+|+|+|...+. .+.|.+|+..+...+. .+...+-. +++|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~-~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE-KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCc-eEEeeccC-CCCceEEEEeCC
Confidence 358899999986532 2999999977765433 33333333 789999999965
No 370
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.52 E-value=0.018 Score=49.39 Aligned_cols=65 Identities=8% Similarity=0.121 Sum_probs=40.1
Q ss_pred cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc--EEEEE-cCCEE---EEEEcccCCCCceeEEEEEEeCC
Q psy16863 363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI--YRTQH-DGNFY---FIDLSSVSLFDSGRWTCLAENAV 428 (1075)
Q Consensus 363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~--~~~~~-~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~ 428 (1075)
.++.++|.|.+.| .| ...|+|+|||.. ..+.. ..+.. +|... .|.+..-.-.....|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4667999999988 33 679999999998 33211 01222 45443 34443221112458999999874
No 371
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.34 E-value=0.019 Score=48.89 Aligned_cols=73 Identities=10% Similarity=0.095 Sum_probs=46.2
Q ss_pred CceeeccCCeEEE-EEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863 357 HDIAVKVGTRARL-LVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGR 430 (1075)
Q Consensus 357 ~~~~v~~G~~v~l-~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~ 430 (1075)
....+.+|+.+.+ .|.+ .|.|+++|+|+.+..... ........+|.. +.|.+.....+|.-.++|.+.+.+-.
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 4456788999999 8887 678999999998743322 111112223432 24555444444555999999988653
No 372
>PHA02982 hypothetical protein; Provisional
Probab=96.22 E-value=0.045 Score=51.98 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=77.6
Q ss_pred CceeeccCCeEEEEEEEe-cCCCcEEEEEECCE-ecC----------C--------CCcEEEEEcCCEEEEEEcccCCCC
Q psy16863 357 HDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDR-KLE----------E--------NKIYRTQHDGNFYFIDLSSVSLFD 416 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~-~l~----------~--------~~~~~~~~~g~~~~L~I~~v~~~d 416 (1075)
.++....+++|.|.|... +..-....|++++. .|. . ...+....+|+.++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 456677899999999963 23345789998652 221 1 124566778999999999999999
Q ss_pred ceeEEEEEEeCCCceee-EEEEEeecCCCCCCCeeeeecceEEecC-CeEEEEEEEECCCCCeEEEEeCCEe
Q psy16863 417 SGRWTCLAENAVGRSHC-SCELSVLVPKAYKAPFFTKELEAILTEQ-GTVSLECKVMGIPTPQLIWYKDNKK 486 (1075)
Q Consensus 417 ~G~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~p~~~~~~~~~~~~g-~~v~l~C~~~g~p~~~v~W~~~g~~ 486 (1075)
.|-|+|+|....+..+. ..=|.|+.... .+. ..++ ....+.|-+-....+...|.-+|..
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V----~~~------W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDI----LYV------VEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceE----EEE------EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999987655432 33344422110 121 2223 3567889886544333388877653
No 373
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.22 E-value=0.02 Score=50.98 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=45.4
Q ss_pred eecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcE--EEEEcCCceE----EEEEeeeeecC-CceEEEEEECCCCc
Q psy16863 562 AKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKY--HIMADGLGGY----SIEINYLEAVD-DGEWKCVATSSSGV 633 (1075)
Q Consensus 562 v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~--~~~~~~~~~~----~L~i~~~~~~d-~G~Y~C~a~n~~g~ 633 (1075)
+..++.++|.|.+.+. |....++|++++..+..+... ....++.+.| .|+|......+ .-.|+|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 4456789999999985 444689999999887543211 1111211233 35555444434 56799999987554
Q ss_pred e
Q psy16863 634 K 634 (1075)
Q Consensus 634 ~ 634 (1075)
.
T Consensus 95 ~ 95 (115)
T cd05769 95 D 95 (115)
T ss_pred c
Confidence 3
No 374
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.15 E-value=0.014 Score=50.02 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=44.1
Q ss_pred ccceEeecCCeEEEEEEEec-C-CCCceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECC
Q psy16863 557 VENVKAKIGTSAILECQVLV-P-PWPRSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSS 630 (1075)
Q Consensus 557 ~~~~~v~~G~~~~L~C~~~~-~-p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~ 630 (1075)
+....+..+..++|.|.+.+ . |.+..++|.++++. . ...-....+..+.| .|.|..-.......|+|.+.+.
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 33334556889999999998 4 55679999999875 1 10001111212222 3444433333445599999987
Q ss_pred CCc
Q psy16863 631 SGV 633 (1075)
Q Consensus 631 ~g~ 633 (1075)
...
T Consensus 89 ~l~ 91 (99)
T cd04986 89 EGD 91 (99)
T ss_pred Ccc
Confidence 643
No 375
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.10 E-value=0.043 Score=47.96 Aligned_cols=69 Identities=7% Similarity=0.076 Sum_probs=47.8
Q ss_pred cCceeeccCCeEEEEEEEecCC--C-cEEEEEECCE-ec--------------CCCCcEE--EEEcCCEEEEEEcccCCC
Q psy16863 356 LHDIAVKVGTRARLLVEIRSPT--E-IKIHWYRNDR-KL--------------EENKIYR--TQHDGNFYFIDLSSVSLF 415 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g~p--~-~~v~W~k~g~-~l--------------~~~~~~~--~~~~g~~~~L~I~~v~~~ 415 (1075)
+....+..|..++|.|+++|.. . ..++|+|.-. .+ ....++. -....+...|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3556778899999999997743 3 5789998321 11 0112222 223456678999999999
Q ss_pred CceeEEEEE
Q psy16863 416 DSGRWTCLA 424 (1075)
Q Consensus 416 d~G~Y~C~a 424 (1075)
|++.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999985
No 376
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.10 E-value=0.034 Score=47.68 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=40.0
Q ss_pred cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCc-EEEEEcCCceEEEE-Eeeeeec-CCceEEEEEECCC
Q psy16863 564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDK-YHIMADGLGGYSIE-INYLEAV-DDGEWKCVATSSS 631 (1075)
Q Consensus 564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~-~~~~~~~~~~~~L~-i~~~~~~-d~G~Y~C~a~n~~ 631 (1075)
.+..++|.|.+.+ .|....++|.++|..+..+.. .....++. .|.+. --.+..+ ....|+|.+.+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEECC
Confidence 3677999999998 566678999999987643311 11222322 33321 1123333 2344999998854
No 377
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.09 E-value=2.4 Score=44.95 Aligned_cols=124 Identities=14% Similarity=0.206 Sum_probs=76.6
Q ss_pred cceeeeecCCeEEEEEEEec--CC-CCeEEEEECCEEee-----------------cCCcEEEEEe-----eCcEEEEEE
Q psy16863 755 LKSCQATVNEEFKFTVQVSI--SP-EPKVSWFRDDQQVV-----------------ESDNVKILKE-----TLGVCHLKI 809 (1075)
Q Consensus 755 ~~~~~~~~g~~~~l~C~v~g--~p-~p~v~W~k~g~~i~-----------------~~~~~~~~~~-----~~~~~~L~I 809 (1075)
..+..+..|..+.|.|..+- +- -..++|+--|-++. ..+.+.+... +...++|+|
T Consensus 271 ~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI 350 (500)
T PHA02914 271 FDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI 350 (500)
T ss_pred cceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence 34566788999999999874 33 34789987664332 1233444322 234578999
Q ss_pred ccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCC-eEEEEEEEEcc--CCCeeEEEECCEE
Q psy16863 810 HALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGG-AVNLECKVIGV--PQPTLKWFKDGRE 886 (1075)
Q Consensus 810 ~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~-~~~L~C~v~g~--p~p~v~W~k~g~~ 886 (1075)
++++.+.+|=|.|+|....-.....--|.|... .+... ..+|. .....|-+-.. -++.+.|.-+|..
T Consensus 351 kka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~------V~f~W----~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~ 420 (500)
T PHA02914 351 KKAHINNAGCYEAQAFMGKFKEECRHCFKVADH------VFFKW----NTEGDNETKVACYAAQYDMQPFSILWKSNGVS 420 (500)
T ss_pred eeEEEEcCCceEEEEecCcchhhhhhheEeccE------EEEEE----EeccCceEEEEEEEEecccCCceeEEEEccEE
Confidence 999999999999999875333333323333211 11111 12433 55678887543 2356999999975
Q ss_pred cC
Q psy16863 887 LK 888 (1075)
Q Consensus 887 l~ 888 (1075)
..
T Consensus 421 ~~ 422 (500)
T PHA02914 421 FG 422 (500)
T ss_pred ec
Confidence 43
No 378
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.01 E-value=0.024 Score=48.57 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=44.5
Q ss_pred ecCceeeccCCeEEEEEEEec-C-C-CcEEEEEECCEecCCC-CcEEEEEcCCEE---EEEEcccCCCCce-eEEEEEEe
Q psy16863 355 RLHDIAVKVGTRARLLVEIRS-P-T-EIKIHWYRNDRKLEEN-KIYRTQHDGNFY---FIDLSSVSLFDSG-RWTCLAEN 426 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~g-~-p-~~~v~W~k~g~~l~~~-~~~~~~~~g~~~---~L~I~~v~~~d~G-~Y~C~a~n 426 (1075)
++....+..+..++|.|.+.+ . | ...|+|.++|.. ... .......++... .|.|.. ..-.+| .|+|++.+
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~-~~W~~g~~ytC~V~H 87 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCA-EEWNKGEPFACTVTH 87 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCH-HHhcCCCeEEEEEEC
Confidence 344445557889999999988 3 4 579999999975 111 111122344433 344432 222445 69999998
Q ss_pred CCC
Q psy16863 427 AVG 429 (1075)
Q Consensus 427 ~~g 429 (1075)
...
T Consensus 88 ~~l 90 (99)
T cd04986 88 PEG 90 (99)
T ss_pred CCc
Confidence 754
No 379
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=96.00 E-value=4.6 Score=47.36 Aligned_cols=451 Identities=12% Similarity=0.062 Sum_probs=221.2
Q ss_pred ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEE--EEEEeCCCc----e
Q psy16863 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWT--CLAENAVGR----S 431 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~--C~a~n~~g~----~ 431 (1075)
...+..|+.+.|.......+ .-++.+-++ .+....++.-+....|.. +...+|.|. |.+.+.... +
T Consensus 106 ~~~l~vGe~l~~~V~~~~e~-~LYKF~I~~----~~~w~~iqDYst~n~lsy---t~~~~G~Y~ll~~~Kd~~S~~~fDD 177 (667)
T PRK14081 106 KDTLNVGEKIEIKVDSNKEP-LMYRYWIKE----DNNWKLIKDYSTENSLSY---TANKPGKYELLVECKRIDSTKDFDD 177 (667)
T ss_pred CccccCCCEEEEEEEeccCc-EEEEEEEcC----CCcEEEEEecCCcceEEE---EecCCCcEEEEEEEecCCCccccCc
Confidence 34577999999987764433 333333222 122222333333333433 456888886 556554332 2
Q ss_pred eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEEC--CCCCeEEEEe---CCEeccCCC---EEEEEeCCCCCC
Q psy16863 432 HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMG--IPTPQLIWYK---DNKKIKAGD---IFALTANPKDPS 503 (1075)
Q Consensus 432 ~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g--~p~~~v~W~~---~g~~l~~~~---~~~l~i~~~~~~ 503 (1075)
.+....+|...+....-.|. .+...+..|+.+.|...+.+ .-...++..+ +|......+ ...+... +.
T Consensus 178 ~~~v~y~Vk~~~~v~I~~F~-~lns~~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~qdYst~n~~~y~---~~ 253 (667)
T PRK14081 178 FKKVKFKVKEIDKVEITDFK-CLNKELICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQDYSTKNIVSYK---EK 253 (667)
T ss_pred ceEEEEEcccCcceEEEecc-ccCcceecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEecCccccceEEEE---eC
Confidence 33444444433221111122 22223445888888865543 3333555544 553332211 1122222 44
Q ss_pred CcEEE--EEEEEecceee----EEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeee--ccceEeecCCeEEEEEEEe
Q psy16863 504 SLGTY--TCEAVNCMGAA----FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKE--VENVKAKIGTSAILECQVL 575 (1075)
Q Consensus 504 d~G~Y--~C~a~n~~g~~----~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~~~L~C~~~ 575 (1075)
.+|.| .|.+.+..... .+.....|. +..|+.+..- -.+.....|+.+.|.+.+.
T Consensus 254 ~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk------------------~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~ 315 (667)
T PRK14081 254 KSGDYKLLCLVKDMYSNNEFDDRAVLVYTVK------------------PYKDIKIRNFTTDLSSPQLTDTDIELKAVAE 315 (667)
T ss_pred CCccEEEEEEEeccCcccccccceEEEEEEe------------------cCCCcEEEEEEEcCCCCeecCceEEEEEEec
Confidence 57888 45555543322 222223332 1122222111 1122346799999999999
Q ss_pred cCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE--CCCCceee---eeEEEEEeCCCCcC
Q psy16863 576 VPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT--SSSGVKQF---SAAYVHVLMPKNYR 650 (1075)
Q Consensus 576 ~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~~---~~~~l~v~~p~~~~ 650 (1075)
|.. ...+.....|..+... .+.. ...+. -.+..+|.|...+. +....... ......+.. ...
T Consensus 316 GG~-~llYrf~I~G~~~e~~-~Y~~------~n~~~---w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~--~~~ 382 (667)
T PRK14081 316 GGK-ELLYRFIIKGKESEDS-GYIR------NNIYT---WKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEE--KSK 382 (667)
T ss_pred CCC-ceEEEEEECCcEEeec-cccc------cceEE---EeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcc--cCC
Confidence 866 3356555455443211 1110 01222 23446777765543 33322211 112222222 112
Q ss_pred CCce----eeccceeeecCCeEEEEEEEecCCCCeEE-EE-ECCEEcCC-----CCeEEEeecCCCceEEEE--EEecCc
Q psy16863 651 KPRF----VESLKAVMTDDGLVSFECKVVGFPTPTLQ-WF-KDNEELKP-----GDVYQLTGTSSLGSYCCV--AKNVMG 717 (1075)
Q Consensus 651 ~p~~----~~~~~~~~~~g~~~~l~C~v~g~p~p~v~-W~-k~g~~l~~-----~~~~~~~~~~d~G~Y~C~--a~N~~g 717 (1075)
.|.. +.+....+..|+++.+.|.+.|.-...+. |. ++|..+.. +..+.+. ..-+|.|+.. |.|...
T Consensus 383 ~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~~~~f~-P~~~G~Y~IeV~vKdk~S 461 (667)
T PRK14081 383 EPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNNWVNFI-PEEKGNYELEVRVKDKYS 461 (667)
T ss_pred CCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccccEEEEE-ECCCeeEEEEEEEecccC
Confidence 2321 11222345568899999999876555444 33 47776642 2233333 3578999765 455444
Q ss_pred e----EEEEEEEEEEeccccCchhhhhhhccCCCCCeEEe---ccceeeeecCCeEEEEEEEecCCCCeEEE--EECCEE
Q psy16863 718 K----AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE---GLKSCQATVNEEFKFTVQVSISPEPKVSW--FRDDQQ 788 (1075)
Q Consensus 718 ~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~g~~~~l~C~v~g~p~p~v~W--~k~g~~ 788 (1075)
. +...+.+.|.+ ..|..+. .+.......|+.++|+|.+.+.-...+.. +.+|..
T Consensus 462 ~~~yD~~k~v~l~V~e-----------------~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~ 524 (667)
T PRK14081 462 DKEYDAHTIVYIKVHE-----------------YIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHK 524 (667)
T ss_pred chhcccceEEEEEEec-----------------cCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEE
Confidence 3 33456777765 3454222 12234478999999999999865554443 446655
Q ss_pred eecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE--EeCCce----EEEEEEEEEEecCCCCCCeeeeecceeecCCC
Q psy16863 789 VVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA--TNDFGQ----SITSCFLKLNVPKHYKKPKFLEELKAVLSEGG 862 (1075)
Q Consensus 789 i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A--~N~~G~----~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~ 862 (1075)
+...+ + .... .+.+. +.-+|.|+..+ .|.... +.....+.|..+..+.-..+ ..-...+..|+
T Consensus 525 v~~t~-Y----s~~~--~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~-~~~~~~~~~n~ 593 (667)
T PRK14081 525 VEETD-Y----IKNK--KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKI-KTSKKKFKCNE 593 (667)
T ss_pred EEEee-c----cccc--eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEE-EeecceEEcCC
Confidence 42211 0 0111 22222 56678888754 455443 22345666665422211111 11122356788
Q ss_pred eEEEEEEEEccCCCeeEE
Q psy16863 863 AVNLECKVIGVPQPTLKW 880 (1075)
Q Consensus 863 ~~~L~C~v~g~p~p~v~W 880 (1075)
.+++++...|.-..-++.
T Consensus 594 ~~t~~~~~~gg~~v~Yef 611 (667)
T PRK14081 594 EVTFSVKSEGGKDVCYEF 611 (667)
T ss_pred eEEEEEEccCCCcEEEEE
Confidence 999999998876666654
No 380
>PHA02633 hypothetical protein; Provisional
Probab=95.88 E-value=0.025 Score=42.38 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=32.7
Q ss_pred EEEEEceeccCCCeEEEEEEEcCceeEEEEEEEeeec
Q psy16863 201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237 (1075)
Q Consensus 201 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 237 (1075)
..|.|-++..+|+|.|.|...|..-....++.|+|..
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 3699999999999999999999888888888888863
No 381
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.86 E-value=0.035 Score=46.91 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=43.9
Q ss_pred eeccCCeEEEEEEEec-CC--CcEEEEEECCEecCCCCcEEE----EEcCCEEEEEEcccCCCCce-eEEEEEEeCC
Q psy16863 360 AVKVGTRARLLVEIRS-PT--EIKIHWYRNDRKLEENKIYRT----QHDGNFYFIDLSSVSLFDSG-RWTCLAENAV 428 (1075)
Q Consensus 360 ~v~~G~~v~l~C~~~g-~p--~~~v~W~k~g~~l~~~~~~~~----~~~g~~~~L~I~~v~~~d~G-~Y~C~a~n~~ 428 (1075)
.+.+|..+++.|.+.+ .| ...|.|+|+...+....-... ........++|.. +.+|.| .|+|+|.-..
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence 4589999999999965 44 368999998877754431110 0111223455544 477777 9999997543
No 382
>KOG1480|consensus
Probab=95.65 E-value=0.0036 Score=70.86 Aligned_cols=176 Identities=23% Similarity=0.321 Sum_probs=101.4
Q ss_pred CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEE----cCCE---EEEEEcccCCCCce--
Q psy16863 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH----DGNF---YFIDLSSVSLFDSG-- 418 (1075)
Q Consensus 348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~----~g~~---~~L~I~~v~~~d~G-- 418 (1075)
..|.|+..+.+..+..|.++.|.|.++. .++|...-++.-+..+....+.. .|.. ..+.|..-..++.|
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~--a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~ 100 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANP--ATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGP 100 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCc--ccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCc
Confidence 4577888888889999999999999854 33443322332232222221111 1111 12233333333333
Q ss_pred -eEEE--EEEeCCCceeeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEE-ECCCCCeEEEEeCCEeccCCCEE
Q psy16863 419 -RWTC--LAENAVGRSHCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDIF 493 (1075)
Q Consensus 419 -~Y~C--~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~~~~~ 493 (1075)
.|.| .|....|... +-.-.|... +....|.. +....+..+..+.+.|.. .+.|...+.|+|++..+.+....
T Consensus 101 ~d~~cQc~a~~~~g~~~-s~~a~vr~a--y~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~ 177 (909)
T KOG1480|consen 101 EDYWCQCVAWSDDGTVK-SRKATVRIA--YLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV 177 (909)
T ss_pred cceeeeeeeecCCCcch-hhhHHHHHH--HHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc
Confidence 4654 5666656221 111111111 01112222 223347777888888885 58888999999999988774433
Q ss_pred ------EEEeCCCCCCCcEEEEEEEEecceeeEEE-EEEEEe
Q psy16863 494 ------ALTANPKDPSSLGTYTCEAVNCMGAAFST-SRVIAR 528 (1075)
Q Consensus 494 ------~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~ 528 (1075)
.+++..+...|.|+|+|+|.|..+..... +.+.+.
T Consensus 178 ~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 178 IRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 46677888999999999999988765432 334443
No 383
>PHA02982 hypothetical protein; Provisional
Probab=95.64 E-value=0.12 Score=49.20 Aligned_cols=121 Identities=15% Similarity=0.241 Sum_probs=73.8
Q ss_pred ceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEec-------------------CCcEEEEEcCCceEEEEEeeeeecC
Q psy16863 559 NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA-------------------SDKYHIMADGLGGYSIEINYLEAVD 619 (1075)
Q Consensus 559 ~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~-------------------~~~~~~~~~~~~~~~L~i~~~~~~d 619 (1075)
++....++++.|.|.......-.+..|+++++-..+ ...+.+..++ ...+|+|+++..+.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g-~~STLTIkk~~i~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG-NSSTFTMKKPDPQN 111 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec-cceeEEeccCCccc
Confidence 345667999999999654443347899987654322 1234444455 45689999999999
Q ss_pred CceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCCeEEEEECCE
Q psy16863 620 DGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNE 689 (1075)
Q Consensus 620 ~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~ 689 (1075)
.|=|+|.+....+..+.-..-+.|+... +.-. ...-.....+.|-+-....+-..|.-+|.
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~------V~~~---W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKED------ILYV---VEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecce------EEEE---EEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 9999999998766554312223332110 0000 11122356788988654433348988775
No 384
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.63 E-value=0.012 Score=52.62 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=48.6
Q ss_pred eecCCeEEEEEEEec-----CCCCeEEEEECCEEeecC--CcEE----------EEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863 760 ATVNEEFKFTVQVSI-----SPEPKVSWFRDDQQVVES--DNVK----------ILKETLGVCHLKIHALEVADQAEWKC 822 (1075)
Q Consensus 760 ~~~g~~~~l~C~v~g-----~p~p~v~W~k~g~~i~~~--~~~~----------~~~~~~~~~~L~I~~~~~~D~G~Y~C 822 (1075)
..-++++.|.|.+.. .+...|.|.++|+.|... .... +..-..|..+|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 456899999999974 134579999999877421 1111 1001123456888776655 899999
Q ss_pred EEEeCCceEEEEEEEEEE
Q psy16863 823 IATNDFGQSITSCFLKLN 840 (1075)
Q Consensus 823 ~A~N~~G~~~~s~~l~V~ 840 (1075)
.+.+...+.+..+.|...
T Consensus 103 eVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 103 EVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEETTEEEEEEEEEEE-
T ss_pred EEEecCCCceEEEEEEEE
Confidence 999988777777777664
No 385
>PHA02633 hypothetical protein; Provisional
Probab=95.51 E-value=0.04 Score=41.33 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=31.1
Q ss_pred EEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCC
Q psy16863 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443 (1075)
Q Consensus 407 L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~ 443 (1075)
|.|.++..+|+|.|.|...|..-....+..|+|....
T Consensus 20 Lwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 20 MLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred EEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 7788999999999999999987777778888776543
No 386
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.18 E-value=0.16 Score=44.53 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=45.5
Q ss_pred eeecCCeEEEEEEEecCCC---CeEEEEECCE-Eee--------------cCCcEEEEEe-eCcEEEEEEccccCCCCeE
Q psy16863 759 QATVNEEFKFTVQVSISPE---PKVSWFRDDQ-QVV--------------ESDNVKILKE-TLGVCHLKIHALEVADQAE 819 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~p~---p~v~W~k~g~-~i~--------------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~ 819 (1075)
.+..|..++|.|.++|.-. -.++|+|.-. .+. ...++.+..+ ..+...|.|.+++.+|++.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence 3668889999999987543 4689988421 110 1123333322 2346789999999999999
Q ss_pred EEEEE
Q psy16863 820 WKCIA 824 (1075)
Q Consensus 820 Y~C~A 824 (1075)
|.|.-
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99986
No 387
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.15 E-value=0.074 Score=44.98 Aligned_cols=68 Identities=7% Similarity=0.053 Sum_probs=43.0
Q ss_pred eecCCeEEEEEEEec-CCC--CeEEEEECCEEeecCCcEEE---EEeeCcEEEEEEccccCCCCe-EEEEEEEeCC
Q psy16863 760 ATVNEEFKFTVQVSI-SPE--PKVSWFRDDQQVVESDNVKI---LKETLGVCHLKIHALEVADQA-EWKCIATNDF 828 (1075)
Q Consensus 760 ~~~g~~~~l~C~v~g-~p~--p~v~W~k~g~~i~~~~~~~~---~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N~~ 828 (1075)
+.+|..++++|.+.+ .|. .++.|+|+...+....-..- .........++|... .+|.| .|+|.|.=..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 578999999999985 454 68999997766653321110 001112346666664 55555 9999996443
No 388
>KOG4597|consensus
Probab=95.08 E-value=0.031 Score=59.94 Aligned_cols=92 Identities=16% Similarity=0.033 Sum_probs=65.8
Q ss_pred eEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE---CCEEeecCCcEEEE-EeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR---DDQQVVESDNVKIL-KETLGVCHLKIHALEVADQAEWKCIAT 825 (1075)
Q Consensus 750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k---~g~~i~~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~A~ 825 (1075)
.+..-+....+..+++..++|-+.|.|.+.|+|.+ |+..+.--..-.+. ..-..++.|.|-+....|+|.|+|.|.
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~r 277 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSAR 277 (560)
T ss_pred ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccc
Confidence 33334445567789999999999999999999954 44333211111110 011136789999999999999999999
Q ss_pred eCCceEEEEEEEEEEe
Q psy16863 826 NDFGQSITSCFLKLNV 841 (1075)
Q Consensus 826 N~~G~~~~s~~l~V~~ 841 (1075)
|.+|....++.+.+..
T Consensus 278 cg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 278 CGAGFLRRDVPCSSVK 293 (560)
T ss_pred cccceeeccceeeeec
Confidence 9999988888777653
No 389
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.05 E-value=0.1 Score=44.75 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=39.5
Q ss_pred cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCc--EEEEEcCCceEE----EEEeeeeecCCceEEEEEECCC
Q psy16863 564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDK--YHIMADGLGGYS----IEINYLEAVDDGEWKCVATSSS 631 (1075)
Q Consensus 564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~--~~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~a~n~~ 631 (1075)
.++.++|.|.+.+ .|....++|+++|.. ..+.. .....+ .+.|. |++..-.....-.|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~-dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQS-GGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCC-CCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3567999999998 465668999999987 32210 011121 12232 3433322223667999999864
No 390
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.93 E-value=0.046 Score=48.99 Aligned_cols=78 Identities=12% Similarity=0.194 Sum_probs=44.3
Q ss_pred eccCCeEEEEEEEec-----CCCcEEEEEECCEecCC---C-CcEE--------E--EEcCCEEEEEEcccCCCCceeEE
Q psy16863 361 VKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEE---N-KIYR--------T--QHDGNFYFIDLSSVSLFDSGRWT 421 (1075)
Q Consensus 361 v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~---~-~~~~--------~--~~~g~~~~L~I~~v~~~d~G~Y~ 421 (1075)
..-++++.|.|.+.. -+...|+|.++|..+-. . .+.. + ...|. ..|.+.....- .|.|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~-aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGN-ASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB---EEEEHHHHH--EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCC-EEEEEcchhcc-ccceE
Confidence 456889999999954 13568999999987621 1 1110 0 01111 23666554333 89999
Q ss_pred EEEEeCCCceeeEEEEEee
Q psy16863 422 CLAENAVGRSHCSCELSVL 440 (1075)
Q Consensus 422 C~a~n~~g~~~~s~~l~V~ 440 (1075)
|.+.......+....|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999887777766666653
No 391
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.56 E-value=0.24 Score=42.30 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=44.6
Q ss_pred eeecCCeEEE-EEEEe-cCCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCC
Q psy16863 759 QATVNEEFKF-TVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDF 828 (1075)
Q Consensus 759 ~~~~g~~~~l-~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~ 828 (1075)
.+..|+.+.+ .|.+. |.|.++|+|+.+..-... .......+| .++|.+.....+|.-.++|++....
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 4667888888 88865 689999999987432210 111111111 3467777777889999999998763
No 392
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.92 E-value=0.89 Score=38.81 Aligned_cols=45 Identities=36% Similarity=0.548 Sum_probs=33.0
Q ss_pred cCcEEEEecCCeEEEEEceeccCCCeEEEEEEEcCceeE-EEEEEEee
Q psy16863 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSV 235 (1075)
Q Consensus 189 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V 235 (1075)
.+|+.+...+- .|.|+.++..|+|.|..++.|..|.. ...+.|.|
T Consensus 61 n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 61 NNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 35676666655 89999999999999999999998887 33444444
No 393
>PHA03042 CD47-like protein; Provisional
Probab=93.34 E-value=0.22 Score=50.00 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=44.5
Q ss_pred cCCCeEEEEEEEEcc-----CCCeeEEEECCEEcCCCCe---eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863 859 SEGGAVNLECKVIGV-----PQPTLKWFKDGRELKAGDI---HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG 927 (1075)
Q Consensus 859 ~~g~~~~L~C~v~g~-----p~p~v~W~k~g~~l~~~~~---~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v 927 (1075)
.-++++.+.|.+..- ....|+|..||+.+...+. ..+.... ...-.|+|||+|.+..-+.....+|.-
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence 357899999999542 2456999999998753222 2232221 123379999999997766666666543
No 394
>KOG4597|consensus
Probab=92.81 E-value=0.14 Score=55.06 Aligned_cols=92 Identities=12% Similarity=0.036 Sum_probs=66.6
Q ss_pred CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE---CCEec--CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR---NDRKL--EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA 424 (1075)
Q Consensus 350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k---~g~~l--~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a 424 (1075)
+.+..-+....+..|++..+.|-+.|.+.+.|.|-+ |+..+ ..+..+.--.-..+..|.|-+....|+|.|+|.+
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 344555666778899999999999999999999965 33322 2111111111123456899999999999999999
Q ss_pred EeCCCceeeEEEEEeec
Q psy16863 425 ENAVGRSHCSCELSVLV 441 (1075)
Q Consensus 425 ~n~~g~~~~s~~l~V~~ 441 (1075)
.|.+|.....+.+.+..
T Consensus 277 rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSSVK 293 (560)
T ss_pred ccccceeeccceeeeec
Confidence 99999988888777653
No 395
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=92.77 E-value=0.14 Score=51.13 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=40.4
Q ss_pred CcEEEEEEC-CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863 378 EIKIHWYRN-DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV 428 (1075)
Q Consensus 378 ~~~v~W~k~-g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~ 428 (1075)
+|.+.|.-+ |+.|..+..+.++..|. |.+.+...+++|.|+|.++...
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGK---LMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCce---EEeeccccccCCceEEEEEEEe
Confidence 689999985 56777777888888886 8899999999999999987543
No 396
>PHA03286 envelope glycoprotein E; Provisional
Probab=92.73 E-value=2.5 Score=45.82 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=51.7
Q ss_pred eEEEEEcccccCCCeEEEEEEEcCCeeEEE-EEEEEEeecCC--Ccccc-------------eeecceeEEeeCCeEEEE
Q psy16863 93 RTELNIRRVRRDDGGRYSVTASNESGYSTA-KFELSVESQVP--DAPAF-------------IRRLHDIAVKVGTRARLL 156 (1075)
Q Consensus 93 ~~~L~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~~~--~~p~~-------------~~~~~~~~v~~G~~~~l~ 156 (1075)
...|+|.+++..++|.|+--..|..|.+.. .+-|+|....+ +++.. +.........+|+++.++
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 457999999999999999999998887744 44556643311 11111 112334456678888776
Q ss_pred EEecCCCeeEEEEccCCCeeEEEeeC
Q psy16863 157 VEIRSPTEIKCQFDLNNTIPFSFRAQ 182 (1075)
Q Consensus 157 c~~~~~~~~~c~~~~~~~~~~~W~~~ 182 (1075)
...... .+++.....+.|++-
T Consensus 206 v~l~~~-----~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 206 VTAHLT-----NWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEeec-----ccCCCceEEEEEEEe
Confidence 655421 123334456666653
No 397
>PHA03042 CD47-like protein; Provisional
Probab=92.63 E-value=0.48 Score=47.64 Aligned_cols=73 Identities=15% Similarity=0.292 Sum_probs=49.5
Q ss_pred eecCCeEEEEEEEecC-----CCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863 760 ATVNEEFKFTVQVSIS-----PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834 (1075)
Q Consensus 760 ~~~g~~~~l~C~v~g~-----p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s 834 (1075)
..-++++.+.|.++.- ....+.|..+|+.+...++. ...+|.+... ..=.|.|+|+|.+...+....
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEecc-ccCCCceeEEEeecccCccEE
Confidence 3467899999999842 35579999999988654322 2346766543 334899999999876555555
Q ss_pred EEEEEE
Q psy16863 835 CFLKLN 840 (1075)
Q Consensus 835 ~~l~V~ 840 (1075)
..|+-.
T Consensus 100 IeLk~~ 105 (286)
T PHA03042 100 IELQYV 105 (286)
T ss_pred EEEEEE
Confidence 555443
No 398
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=92.53 E-value=0.19 Score=50.29 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=38.5
Q ss_pred CeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCCeEEEEEEEcC
Q psy16863 174 TIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 223 (1075)
Q Consensus 174 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 223 (1075)
.|.+.|...++.++.+....-+...| .|.+.+.+.+++|.|+|..+-.
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG--~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETG--KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCc--eEEeeccccccCCceEEEEEEE
Confidence 47899999888888766554455555 5999999999999999998643
No 399
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=92.30 E-value=6.2 Score=38.93 Aligned_cols=102 Identities=14% Similarity=0.264 Sum_probs=53.4
Q ss_pred CcEEEEEECCEecCCCC---cEEEEEcCCE---EEEEEc-ccCCCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCe
Q psy16863 378 EIKIHWYRNDRKLEENK---IYRTQHDGNF---YFIDLS-SVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPF 449 (1075)
Q Consensus 378 ~~~v~W~k~g~~l~~~~---~~~~~~~g~~---~~L~I~-~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~ 449 (1075)
...++||.||.++.... ......+|.. ++|++. +...+..=..+|++.=..... ...... ...|..+.+|.
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a-~~~P~Vy~~P~ 84 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNA-TATPSVYPKPR 84 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeec-ccccceecCCE
Confidence 45899999999887542 2334455633 355552 222333347899986433322 222211 12222233444
Q ss_pred eeeecceEEecCCeEEEEEEEECCCC--CeEEEEeCCEec
Q psy16863 450 FTKELEAILTEQGTVSLECKVMGIPT--PQLIWYKDNKKI 487 (1075)
Q Consensus 450 ~~~~~~~~~~~g~~v~l~C~~~g~p~--~~v~W~~~g~~l 487 (1075)
+... +.+| ...|.+...|. ..+.|+-++...
T Consensus 85 vsv~----F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 85 VSVR----FEDG---YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEE----ecCC---EEEEEcceeeCCCeEEEEEECCccC
Confidence 4332 2223 33577665553 589999888763
No 400
>PHA03283 envelope glycoprotein E; Provisional
Probab=91.27 E-value=3.3 Score=46.05 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=51.0
Q ss_pred eEEEEEcccccCCCeEEEEEEEcCCeeEEEEEEEEEeec--CC--Cccc------------c-eeecceeEEeeCCeEEE
Q psy16863 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ--VP--DAPA------------F-IRRLHDIAVKVGTRARL 155 (1075)
Q Consensus 93 ~~~L~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~--~~--~~p~------------~-~~~~~~~~v~~G~~~~l 155 (1075)
...|+|.+++.+++|.|+--..|..+.....+.|+|... .+ .||. | +..-+.....+|+++.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 457999999999999999999887774455555666541 11 1111 1 11223455678888887
Q ss_pred EEEecCCCeeEEEEccCCCeeEEEeeC
Q psy16863 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQ 182 (1075)
Q Consensus 156 ~c~~~~~~~~~c~~~~~~~~~~~W~~~ 182 (1075)
...+.... ++......+.|++-
T Consensus 213 si~l~s~~-----~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 213 SVHLESDI-----GDPSFSATIDWYYM 234 (542)
T ss_pred eEEEeecc-----CCCCceEEEEEEEe
Confidence 66554221 01223455667653
No 401
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=90.44 E-value=1.6 Score=37.00 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=38.5
Q ss_pred eEEEEEEEEccCCCeeEEEECCEEcC-CCCeeEEEECCCCceeeEEEEEEEEeCCeeEEE
Q psy16863 863 AVNLECKVIGVPQPTLKWFKDGRELK-AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSS 921 (1075)
Q Consensus 863 ~~~L~C~v~g~p~p~v~W~k~g~~l~-~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~ 921 (1075)
...|.+++.+. .+.+.||.||..+. ....+.+...... .|.|+..+.+..|...+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~~~~~~---~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLFWQPDR---PGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEEeCCCC---CeeEEEEEEcCCCCEEE
Confidence 44555555555 45899999999993 3334455444422 79999999999998755
No 402
>KOG1026|consensus
Probab=90.33 E-value=0.29 Score=57.52 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=94.4
Q ss_pred eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863 758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837 (1075)
Q Consensus 758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l 837 (1075)
..+..|..+++.|...+.|.|.+.|+.++....+.......-. ..+.+.+. ++|.+.|..|....++.+
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~---------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--SECEVLEN---------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--ccceeeec---------hhhHHHHhhhhcCceeee
Confidence 3466788999999999999999999998766554332111111 11122222 999999999999888888
Q ss_pred EEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCC-CCeeEEEE--------CCCCceeeEEE
Q psy16863 838 KLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-GDIHKIIS--------GEDGTCCLGIY 908 (1075)
Q Consensus 838 ~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~-~~~~~i~~--------~~~~~~d~G~Y 908 (1075)
.+..|.....+.-. ... ...-+.-.+.+.|.+.-.|..+|..+.. |....-.. ......+.|.|
T Consensus 271 ~~~~p~~~~~~~~~------~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~ 343 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSP------LSD-HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNY 343 (774)
T ss_pred EEecccccccCCCC------ccc-cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcc
Confidence 88776432221100 000 1111222233667777899888766532 11110000 01123457999
Q ss_pred EEEEEeCCeeEEEEEEEEEecCC
Q psy16863 909 TCEAHNCMGTTSSSAALLGFEDK 931 (1075)
Q Consensus 909 ~C~a~N~~G~~~~~~~l~v~~~~ 931 (1075)
+|.+.|..|.........+...|
T Consensus 344 ~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred eeeecccCccccccCcCccccCC
Confidence 99999999988776666655544
No 403
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=89.07 E-value=0.94 Score=38.67 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=40.6
Q ss_pred eEEEEEEEecCCCCe--EEEEECCEEeec---CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863 765 EFKFTVQVSISPEPK--VSWFRDDQQVVE---SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833 (1075)
Q Consensus 765 ~~~l~C~v~g~p~p~--v~W~k~g~~i~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 833 (1075)
++.-.-.....+... ++|..+..+... +.++.+..+ ...|.|+.+++.|+|.|.-+++|..|....
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~e---nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSE---NLALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETT---TTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeecc---CceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 344444554455554 455443333332 234554432 347999999999999999999999998743
No 404
>PHA03283 envelope glycoprotein E; Provisional
Probab=89.05 E-value=9.6 Score=42.61 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=56.4
Q ss_pred CEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeee-eeccceEeecCCeEE
Q psy16863 491 DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI-KEVENVKAKIGTSAI 569 (1075)
Q Consensus 491 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~~~ 569 (1075)
+...|.|.++..+++|.|+-...|..+.....+.|.|.++.........+...+.|..-...|. ..-.......|+++.
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 3457889999999999999999998875666666777653221110000001111111111222 223445567899988
Q ss_pred EEEEEecCC----CCceEEEEeC
Q psy16863 570 LECQVLVPP----WPRSIYWYNK 588 (1075)
Q Consensus 570 L~C~~~~~p----~p~~v~W~~~ 588 (1075)
+.-...... ...+|.||.-
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEEe
Confidence 877665332 3348999873
No 405
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=88.62 E-value=4.6 Score=34.18 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=46.6
Q ss_pred CCCeEEeccceeeeecC----CeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863 747 KAPKFIEGLKSCQATVN----EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822 (1075)
Q Consensus 747 ~~p~~~~~~~~~~~~~g----~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 822 (1075)
.++.|+.+.....+... +...|.+.+.+. .+.+.||.||+.+...... ..+.+. +...|.|+.
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~---------~~~~~~---~~~~G~h~l 75 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG---------HQLFWQ---PDRPGEHTL 75 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCC---------CeEEeC---CCCCeeEEE
Confidence 46666665544333222 256667777766 5599999999999433211 123332 356799999
Q ss_pred EEEeCCceEEE
Q psy16863 823 IATNDFGQSIT 833 (1075)
Q Consensus 823 ~A~N~~G~~~~ 833 (1075)
.+.+..|....
T Consensus 76 ~vvD~~G~~~~ 86 (89)
T PF06832_consen 76 TVVDAQGRSAS 86 (89)
T ss_pred EEEcCCCCEEE
Confidence 99999888543
No 406
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=88.56 E-value=2 Score=45.62 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=17.8
Q ss_pred eEEEEEEEec-CC-CcEEEEEEC
Q psy16863 366 RARLLVEIRS-PT-EIKIHWYRN 386 (1075)
Q Consensus 366 ~v~l~C~~~g-~p-~~~v~W~k~ 386 (1075)
.++|+|.+.| .| ...++|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999988 33 679999999
No 407
>PHA03282 envelope glycoprotein E; Provisional
Probab=88.15 E-value=5.9 Score=43.25 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEEceeccCCCeEEEEEEEc
Q psy16863 200 RTELNIRRVRRDDGGRYSVTASN 222 (1075)
Q Consensus 200 ~~~L~I~~~~~~D~G~Y~C~a~n 222 (1075)
...|++.|+..+++|.|.|.+.-
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccceEecCCCcccCceEEEEEEE
Confidence 44799999999999999999853
No 408
>PHA03286 envelope glycoprotein E; Provisional
Probab=88.08 E-value=14 Score=40.50 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=32.3
Q ss_pred EEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEe
Q psy16863 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644 (1075)
Q Consensus 608 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~ 644 (1075)
..|+|.+++..++|.|+-...|..|....+...+.|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 3799999999999999999999988887777777774
No 409
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=87.72 E-value=2 Score=34.22 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=40.1
Q ss_pred eeecCCeEEEEEEEecCCCCeEEEEECC-EEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863 759 QATVNEEFKFTVQVSISPEPKVSWFRDD-QQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832 (1075)
Q Consensus 759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g-~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 832 (1075)
.+..|+.+.|...........+.|..++ .....+..+.......|.+.+++. |.|..|...
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~t~ty~~~G~y~V~lt-------------v~n~~g~~t 68 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSVTHTYSSPGTYTVTLT-------------VTNGVGSAT 68 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEEEEEESSSEEEEEEEE-------------EEETTSEEE
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCEEEEcCCCeEEEEEEE-------------EEECCCCcC
Confidence 4678999999998844445699999988 444444555555555555555444 788888754
No 410
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=87.19 E-value=0.68 Score=53.52 Aligned_cols=273 Identities=14% Similarity=0.100 Sum_probs=20.6
Q ss_pred eEEEEEceecc-CCCeEEEEEEE--c-CceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEE
Q psy16863 200 RTELNIRRVRR-DDGGRYSVTAS--N-ESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQ 275 (1075)
Q Consensus 200 ~~~L~I~~~~~-~D~G~Y~C~a~--n-~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~ 275 (1075)
...|.|..-.. .-...|++.++ + ........+.|.|... .....+..-....+..++.+.|....+..+.. .
T Consensus 37 ~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s--~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~--~ 112 (440)
T PF02010_consen 37 TPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPS--PLVAVIKGGSSRTVGYNSDITLDGSQSYDPDG--P 112 (440)
T ss_dssp SSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE---------------------------------------
T ss_pred ceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeec--cceeEEcCCccceeecCceEEEeeEEEecccc--c
Confidence 34688887665 22345577776 2 3333455666666531 11112222122223333445544322211100 0
Q ss_pred EecCCCeeeEEecCCCcccc-C---CCeEEEeeCCeEEEEEcc--cCCCCCEEEEEEEEeCCe-eEEEEEEEEEecCCCC
Q psy16863 276 FDLNNTIPFSFRAQGDHPIF-G---NRFRAINRDGRTELNIRR--VRRDDGGRYSVTASNESG-YSTAKFELSVESQVPD 348 (1075)
Q Consensus 276 ~~~~~~~~~~w~~~~~~~~~-~---~~~~~~~~~~~~~L~I~~--~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~~~~ 348 (1075)
.+.....|.|......... - .............|+|.. +.+...+.|+..+....+ ..+....+.+. ...
T Consensus 113 -~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~--~~~ 189 (440)
T PF02010_consen 113 -PGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVV--SGD 189 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEec--cCC
Confidence 0012456677654432220 0 000011112223566643 344444555666655443 23333344443 233
Q ss_pred CCeeee-ecC--ceeeccCCeEEEEEEEecC----CCcEEEEEE--------CCEecCCCCcEEEEEcCCEEEEEEcccC
Q psy16863 349 APAFIR-RLH--DIAVKVGTRARLLVEIRSP----TEIKIHWYR--------NDRKLEENKIYRTQHDGNFYFIDLSSVS 413 (1075)
Q Consensus 349 ~p~~~~-~~~--~~~v~~G~~v~l~C~~~g~----p~~~v~W~k--------~g~~l~~~~~~~~~~~g~~~~L~I~~v~ 413 (1075)
+|.+.. ... ...+..++.+.|...+.+. ....+.|.. ....+.... ......-....|.|..-.
T Consensus 190 ~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~ 268 (440)
T PF02010_consen 190 PPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGV 268 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccc-cccccccccccccccccc
Confidence 444322 222 2238888888887776542 346889987 111111000 001111123356676655
Q ss_pred CCCceeEEEE--EEeCCCce-eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCC--CCeEEEEe
Q psy16863 414 LFDSGRWTCL--AENAVGRS-HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP--TPQLIWYK 482 (1075)
Q Consensus 414 ~~d~G~Y~C~--a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~v~W~~ 482 (1075)
....+.|..+ +.+..+.. .++..+.+..+|..- .+...+..-......++|.|.-.... +..|.|+.
T Consensus 269 l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g--~c~v~P~~G~al~T~Ft~~c~~~~d~~~pL~Y~f~~ 340 (440)
T PF02010_consen 269 LEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGG--SCSVSPSSGYALETTFTITCSGWTDDDQPLTYQFYY 340 (440)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 6666677655 44443332 444555554444311 22222211123345688889754222 23666665
No 411
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=87.07 E-value=5.5 Score=32.78 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE-EeCCceEEEEEEEEE
Q psy16863 777 EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA-TNDFGQSITSCFLKL 839 (1075)
Q Consensus 777 ~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A-~N~~G~~~~s~~l~V 839 (1075)
.+.+.|+-.+..+..... .+........|+|.++|.| .|+.-...+...|.|
T Consensus 26 ~~~~~l~~~~~k~~~~~~-----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK-----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEESS-----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccccce-----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 567777766654432221 3556677889999999999 565444444444433
No 412
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=86.85 E-value=0.8 Score=52.95 Aligned_cols=259 Identities=13% Similarity=0.127 Sum_probs=22.2
Q ss_pred EEEEEcccCC-CCCEEEEEEEE--e-CCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCC------
Q psy16863 308 TELNIRRVRR-DDGGRYSVTAS--N-ESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT------ 377 (1075)
Q Consensus 308 ~~L~I~~~~~-~d~G~Y~C~a~--n-~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p------ 377 (1075)
..|.|..-.. ...+.|.+.+. + ........+.+.|... +..+. +.......+..++.+.|....+-.|
T Consensus 38 ~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s-~l~~~-I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~ 115 (440)
T PF02010_consen 38 PQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPS-PLVAV-IKGGSSRTVGYNSDITLDGSQSYDPDGPPGD 115 (440)
T ss_dssp SECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------
T ss_pred eEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeec-cceeE-EcCCccceeecCceEEEeeEEEecccccccC
Confidence 4788887665 33467777777 3 2333566667777641 11222 2222333444456788877554333
Q ss_pred -CcEEEEEECCEecC-CC--C-cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeee
Q psy16863 378 -EIKIHWYRNDRKLE-EN--K-IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFT 451 (1075)
Q Consensus 378 -~~~v~W~k~g~~l~-~~--~-~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~ 451 (1075)
...+.|.-....-. .- . ............|.|..-...-.-.|...+.-..+.. ..+....|.+.... +|.+.
T Consensus 116 ~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~-~p~v~ 194 (440)
T PF02010_consen 116 SGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGD-PPTVS 194 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCC-CCcee
Confidence 25788976543222 00 0 0001111122235554333322223666655433332 33344444433221 12211
Q ss_pred -eecc---eEEecCCeEEEEEEEECC----CCCeEEEEe--------CCEecc--------CCCEEEEEeCCCCCCCcEE
Q psy16863 452 -KELE---AILTEQGTVSLECKVMGI----PTPQLIWYK--------DNKKIK--------AGDIFALTANPKDPSSLGT 507 (1075)
Q Consensus 452 -~~~~---~~~~~g~~v~l~C~~~g~----p~~~v~W~~--------~g~~l~--------~~~~~~l~i~~~~~~d~G~ 507 (1075)
.... ..+..++.+.|...+.+. ....+.|.. ....+. ......|.|..-.......
T Consensus 195 I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~ 274 (440)
T PF02010_consen 195 ISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGST 274 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccccccccccccccccccccccccc
Confidence 1111 126677777776665542 234789987 111111 1112245555444444455
Q ss_pred EE--EEEEecceee-EEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEec-CCCCceE
Q psy16863 508 YT--CEAVNCMGAA-FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSI 583 (1075)
Q Consensus 508 Y~--C~a~n~~g~~-~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~-~p~p~~v 583 (1075)
|. +.+.+..+.. .++..+.+..++ ....+...|... ......++|.|.--. ...|..|
T Consensus 275 Y~~~l~v~~~~~~~~~a~~~~~~n~pP-----------------~~g~c~v~P~~G-~al~T~Ft~~c~~~~d~~~pL~Y 336 (440)
T PF02010_consen 275 YTFRLTVTDSSGSSGSASISFTVNAPP-----------------SGGSCSVSPSSG-YALETTFTITCSGWTDDDQPLTY 336 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------cccccccccccc-ccccccccccccccccccccccc
Confidence 64 4555554443 333444432110 011222222222 344567899997642 2335678
Q ss_pred EEEe
Q psy16863 584 YWYN 587 (1075)
Q Consensus 584 ~W~~ 587 (1075)
.|+.
T Consensus 337 ~f~~ 340 (440)
T PF02010_consen 337 QFYY 340 (440)
T ss_dssp ----
T ss_pred cccc
Confidence 8776
No 413
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=86.43 E-value=30 Score=34.35 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=54.8
Q ss_pred CeEEEEECCEEeecCC---cEEEEEee--CcEEEEEE-ccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeee
Q psy16863 778 PKVSWFRDDQQVVESD---NVKILKET--LGVCHLKI-HALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFL 851 (1075)
Q Consensus 778 p~v~W~k~g~~i~~~~---~~~~~~~~--~~~~~L~I-~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~ 851 (1075)
..++||.||.++.... ......++ ..++.|.+ -+...+-.=+.+|.+.=.-+....+.+.....|..+.+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 3789999999886332 11222221 01455666 333455567889998733333322222233345555566543
Q ss_pred eecceeecCCCeEEEEEEEEccCC--CeeEEEECCEE
Q psy16863 852 EELKAVLSEGGAVNLECKVIGVPQ--PTLKWFKDGRE 886 (1075)
Q Consensus 852 ~~~~~~~~~g~~~~L~C~v~g~p~--p~v~W~k~g~~ 886 (1075)
. .+..| ...|.+.-.|. ..+.|+-++..
T Consensus 87 v----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 87 V----RFEDG---YAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred E----EecCC---EEEEEcceeeCCCeEEEEEECCcc
Confidence 2 24344 34455554442 57999987765
No 414
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=85.89 E-value=5.5 Score=32.69 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=36.7
Q ss_pred cCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE--EEEeCCceEEEEEEEE
Q psy16863 762 VNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC--IATNDFGQSITSCFLK 838 (1075)
Q Consensus 762 ~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C--~A~N~~G~~~~s~~l~ 838 (1075)
.+..+.|.+...+ .....+.|...+.............. ..|.|+. .+.|..|.+.....+.
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~~~~~y~---------------~~G~y~v~l~v~n~~g~~~~~~~i~ 77 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPTVTHTYT---------------KPGTYTVTLTVTNAVGSASATVTVV 77 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCCEEEEeC---------------CCcEEEEEEEEEcCCCcEEEEEEEE
Confidence 6788889988775 34568999775543322233333333 4455543 3778888655455444
Q ss_pred E
Q psy16863 839 L 839 (1075)
Q Consensus 839 V 839 (1075)
|
T Consensus 78 v 78 (79)
T smart00089 78 V 78 (79)
T ss_pred E
Confidence 3
No 415
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=84.25 E-value=6 Score=32.56 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=25.5
Q ss_pred CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863 378 EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425 (1075)
Q Consensus 378 ~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~ 425 (1075)
.+.+.|+-.+..+..... .+.....+..|+|.+.|.|+
T Consensus 26 ~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEc
Confidence 568888877654432222 13445667899999999994
No 416
>PHA03281 envelope glycoprotein E; Provisional
Probab=83.64 E-value=13 Score=41.62 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=50.1
Q ss_pred EEEEEcccccCCCeEEEEEEEcCCeeEEE-EEEEEEeecC---CCcccceee----------cceeEEeeCCeEEEEEEe
Q psy16863 94 TELNIRRVRRDDGGRYSVTASNESGYSTA-KFELSVESQV---PDAPAFIRR----------LHDIAVKVGTRARLLVEI 159 (1075)
Q Consensus 94 ~~L~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~~---~~~p~~~~~----------~~~~~v~~G~~~~l~c~~ 159 (1075)
..|+|.+++..++|.|+--.....|.... .+-|+|..+. .++|.+... -.+....+|++..+.+.+
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence 37999999999999999877766665544 5556665422 112222221 223456688888877766
Q ss_pred cCCCeeEEEEccCCCeeEEEeeC
Q psy16863 160 RSPTEIKCQFDLNNTIPFSFRAQ 182 (1075)
Q Consensus 160 ~~~~~~~c~~~~~~~~~~~W~~~ 182 (1075)
.... -++.....+.|++-
T Consensus 378 ~s~i-----hD~pFsleI~Wyy~ 395 (642)
T PHA03281 378 QYKI-----HDAPFDLLLEWLYV 395 (642)
T ss_pred eeec-----cCCCceeEEEEEEe
Confidence 5321 01223455666643
No 417
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=82.75 E-value=4.8 Score=32.02 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=32.8
Q ss_pred EeecCCeEEEEEEEecCCCCceEEEEeCC-eEEecCCcEEEEEcCCceEEEEEe
Q psy16863 561 KAKIGTSAILECQVLVPPWPRSIYWYNKE-GVVEASDKYHIMADGLGGYSIEIN 613 (1075)
Q Consensus 561 ~v~~G~~~~L~C~~~~~p~p~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~L~i~ 613 (1075)
.+..|+.++|.... ....+..+.|..++ .....+..........+.|.+++.
T Consensus 7 ~~~~g~~v~f~~~~-~~g~~~~y~W~fgd~~~~~~~~~~t~ty~~~G~y~V~lt 59 (69)
T PF00801_consen 7 YVPTGQPVTFTASS-SDGSPVTYSWDFGDNGTVSTGSSVTHTYSSPGTYTVTLT 59 (69)
T ss_dssp CEBTTSEEEEEETT-TTSSECEEEEE-SSESEEECSSEEEEEESSSEEEEEEEE
T ss_pred EEcCCCEEEEEEEc-cCCCCeEEEEEECCCCccccCCCEEEEcCCCeEEEEEEE
Confidence 35679999999888 33335689999998 555555555555555555554443
No 418
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=82.64 E-value=1.2 Score=50.24 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=13.7
Q ss_pred EEEEEcccccCCCeEEEEEEEcCCeeEEE-EEEEEEeecCCC----ccc--c----------eeecceeEEeeCCeEEEE
Q psy16863 94 TELNIRRVRRDDGGRYSVTASNESGYSTA-KFELSVESQVPD----APA--F----------IRRLHDIAVKVGTRARLL 156 (1075)
Q Consensus 94 ~~L~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~~~~----~p~--~----------~~~~~~~~v~~G~~~~l~ 156 (1075)
..|.|.+++.+|+|.|+-...|..|.... .+.|.|....+. +|. + +.........+|+++.+.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence 46999999999999999999887766533 345555543222 121 1 122334456678887776
Q ss_pred EEecCCCeeEEEEc-cCCCeeEEEeeCC
Q psy16863 157 VEIRSPTEIKCQFD-LNNTIPFSFRAQG 183 (1075)
Q Consensus 157 c~~~~~~~~~c~~~-~~~~~~~~W~~~~ 183 (1075)
..+.... .+ ......+.|++-.
T Consensus 169 v~l~~~~-----~d~~~f~~~i~W~~~~ 191 (439)
T PF02480_consen 169 VHLQSEA-----HDDPPFSLEIDWYYMP 191 (439)
T ss_dssp -EEEEEE-----SSS--EEEEEEEEEE-
T ss_pred EEEEecc-----CCCCCeeEEEEEEEec
Confidence 5543211 11 2234567787643
No 419
>KOG1026|consensus
Probab=82.47 E-value=1.6 Score=51.73 Aligned_cols=154 Identities=20% Similarity=0.149 Sum_probs=92.6
Q ss_pred ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 437 (1075)
...+..|..+++.|...+.|.+.+.|+.++....+.......-. +.+ ..+.+ ++|.++|..|....+..+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~~-~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-SEC-EVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-ccc-eeeec--------hhhHHHHhhhhcCceeee
Confidence 45677899999999999999999999998866554322111111 111 11111 899999999999888888
Q ss_pred EeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEE---------EEeCCCCCCCcEEE
Q psy16863 438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA---------LTANPKDPSSLGTY 508 (1075)
Q Consensus 438 ~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~---------l~i~~~~~~d~G~Y 508 (1075)
.+..++....+.-..+ . ....+.--+.+.|.+...|..++.-+....... +........+.|.|
T Consensus 271 ~~~~p~~~~~~~~~~~------~-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~ 343 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSPLS------D-HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNY 343 (774)
T ss_pred EEecccccccCCCCcc------c-cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcc
Confidence 8876643211110000 0 111111112356777888988877654221111 11222245678999
Q ss_pred EEEEEecceeeEEEEEEEEe
Q psy16863 509 TCEAVNCMGAAFSTSRVIAR 528 (1075)
Q Consensus 509 ~C~a~n~~g~~~~~~~v~v~ 528 (1075)
+|.+.|..|.+.......+.
T Consensus 344 ~~~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRNPGGFM 363 (774)
T ss_pred eeeecccCccccccCcCccc
Confidence 99999999887665544443
No 420
>PHA03282 envelope glycoprotein E; Provisional
Probab=82.35 E-value=35 Score=37.70 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=25.0
Q ss_pred EEEEcccCCCCCEEEEEEEEeCCee--EEEEEEEEEe
Q psy16863 309 ELNIRRVRRDDGGRYSVTASNESGY--STAKFELSVE 343 (1075)
Q Consensus 309 ~L~I~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~ 343 (1075)
+|.|.+++.+|+|.|+-.+...... +...+.|.|.
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred eEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 6999999999999999987543222 3444555554
No 421
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=82.05 E-value=7.6 Score=32.74 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=44.8
Q ss_pred cCceeeccCCeEEEEEEEec-----CCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863 356 LHDIAVKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA 424 (1075)
Q Consensus 356 ~~~~~v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a 424 (1075)
++...+..|++++..|.+.. .....|.|..|+..+ +..++....++. +.+++.+.....+-.|.|..
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~~-SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDTV-SSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTTE-EEEEESS--SSEEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCeE-EEEEEccCCCCCceEEEEEE
Confidence 34556789999999999843 245689999999955 455565555554 66788887766666777764
No 422
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=81.86 E-value=4.4 Score=34.15 Aligned_cols=71 Identities=14% Similarity=0.319 Sum_probs=46.4
Q ss_pred ccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEE
Q psy16863 250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 327 (1075)
Q Consensus 250 ~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 327 (1075)
+...+..|.++++.|.+... |.- ......+.|+.++. .+++.+++...+. ...+++.+......-.|.|..
T Consensus 11 ~~pvv~lGS~vtasC~l~~~----c~~-~~~a~~I~Wkln~~-~iP~~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQN----CSH-SVNASQIVWKLNGE-KIPGSQYRVINDT-VSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CC----CHC-T-STTCEEEECSSC-ESTCGCEEEESTT-EEEEEESS--SSEEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECC----CCC-CcccceEEEEECCE-ECChhHcceeCCe-EEEEEEccCCCCCceEEEEEE
Confidence 34457889999999998742 322 23455677877776 7888888877544 468888888777766777764
No 423
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=81.69 E-value=10 Score=31.00 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCCeEEEEEEEEc-cCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEE--EEEEeCCeeEEEEEEEEE
Q psy16863 860 EGGAVNLECKVIG-VPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYT--CEAHNCMGTTSSSAALLG 927 (1075)
Q Consensus 860 ~g~~~~L~C~v~g-~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~--C~a~N~~G~~~~~~~l~v 927 (1075)
.+..+.|.+...+ .....+.|...+.....+...... ... .|.|+ ..|.|..|+.+....+.|
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~~~~~-y~~----~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPTVTHT-YTK----PGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCCEEEE-eCC----CcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 5778999988765 345678896533222222222222 222 69994 588999997666666554
No 424
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=74.13 E-value=7.9 Score=41.29 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=18.5
Q ss_pred eEEEEEEEecC-CCCceEEEEeC
Q psy16863 567 SAILECQVLVP-PWPRSIYWYNK 588 (1075)
Q Consensus 567 ~~~L~C~~~~~-p~p~~v~W~~~ 588 (1075)
.++|.|.+.|. |....+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999984 65668999999
No 425
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=71.91 E-value=26 Score=28.77 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=19.2
Q ss_pred CCeEEEEEEEecC-CCCeEEEEECCE
Q psy16863 763 NEEFKFTVQVSIS-PEPKVSWFRDDQ 787 (1075)
Q Consensus 763 g~~~~l~C~v~g~-p~p~v~W~k~g~ 787 (1075)
|+++.|.+..... ....+.|..++.
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~W~fgdg 39 (81)
T cd00146 14 GASVTFSASDSSGGSIVSYKWDFGDG 39 (81)
T ss_pred CccEEEEEEeCCCCCEEEEEEEeCCC
Confidence 7888899887754 456899988764
No 426
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=71.87 E-value=12 Score=42.23 Aligned_cols=78 Identities=26% Similarity=0.520 Sum_probs=14.8
Q ss_pred EEEEcccCCCCCEEEEEEEEeCCeeE-EEEEEEEEecCCCC----CCe------------eeeecCceeeccCCeEEEEE
Q psy16863 309 ELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPD----APA------------FIRRLHDIAVKVGTRARLLV 371 (1075)
Q Consensus 309 ~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~----~p~------------~~~~~~~~~v~~G~~v~l~C 371 (1075)
.|.|.+++.+|+|.|+-...|..+.. ...+.|.|....+. +|. .++........+|+++.+..
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v 169 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLSV 169 (439)
T ss_dssp --------------------------------------------------------SEEEEEE--SEEE--TT--EE---
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEeE
Confidence 69999999999999999998766542 33345555542221 121 12233444567899888877
Q ss_pred EEecC----C--CcEEEEEEC
Q psy16863 372 EIRSP----T--EIKIHWYRN 386 (1075)
Q Consensus 372 ~~~g~----p--~~~v~W~k~ 386 (1075)
.+... + ...|.||+-
T Consensus 170 ~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 170 HLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp EEEEEESSS--EEEEEEEEEE
T ss_pred EEEeccCCCCCeeEEEEEEEe
Confidence 76331 1 358999873
No 427
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=71.36 E-value=35 Score=27.97 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=19.7
Q ss_pred CCeEEEEEEEecCCCCceEEEEeCCe
Q psy16863 565 GTSAILECQVLVPPWPRSIYWYNKEG 590 (1075)
Q Consensus 565 G~~~~L~C~~~~~p~p~~v~W~~~~~ 590 (1075)
|+.+.|............+.|.++++
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~W~fgdg 39 (81)
T cd00146 14 GASVTFSASDSSGGSIVSYKWDFGDG 39 (81)
T ss_pred CccEEEEEEeCCCCCEEEEEEEeCCC
Confidence 78899998877543345899999876
No 428
>PHA03052 Hypothetical protein; Provisional
Probab=64.71 E-value=18 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=27.8
Q ss_pred ceeeeecCCeEEEEEEEecCC---CCeEEEEECCEEee
Q psy16863 756 KSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVV 790 (1075)
Q Consensus 756 ~~~~~~~g~~~~l~C~v~g~p---~p~v~W~k~g~~i~ 790 (1075)
....+..|..++|.|++.-.+ .+.+.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 345688999999999998433 56899999998884
No 429
>PHA03281 envelope glycoprotein E; Provisional
Probab=63.54 E-value=55 Score=36.89 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=49.5
Q ss_pred EEEEccccCCCCeEEEEEEEeCCceEEE-EEEEEEEecC--CCCCCeeeee----------cc-eeecCCCeEEEEEEEE
Q psy16863 806 HLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPK--HYKKPKFLEE----------LK-AVLSEGGAVNLECKVI 871 (1075)
Q Consensus 806 ~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-s~~l~V~~~~--~~~~p~~~~~----------~~-~~~~~g~~~~L~C~v~ 871 (1075)
.|.|.+++..++|.|+--..+.-|.... .+.|.|..++ ++..|..... .. .++..|+++.|...+.
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~ 378 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQ 378 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEe
Confidence 7999999999999999888877675444 4555665433 1222221111 11 2467999888877775
Q ss_pred cc--CC---CeeEEEE
Q psy16863 872 GV--PQ---PTLKWFK 882 (1075)
Q Consensus 872 g~--p~---p~v~W~k 882 (1075)
.. .. .+|.||.
T Consensus 379 s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 379 YKIHDAPFDLLLEWLY 394 (642)
T ss_pred eeccCCCceeEEEEEE
Confidence 33 22 4699986
No 430
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=63.42 E-value=72 Score=25.13 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=36.6
Q ss_pred CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839 (1075)
Q Consensus 778 p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V 839 (1075)
....|+++|+.+..- .+...+..-....-+...+.+.|.+++.+..+.|.......+.|
T Consensus 7 v~H~W~~~g~~~~~i---~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVARI---PLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEEE---EEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 367899999876421 11111111112333344558999999999999998777666554
No 431
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=57.68 E-value=73 Score=25.09 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=37.8
Q ss_pred CcEEEEEECCEecCCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863 378 EIKIHWYRNDRKLEENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439 (1075)
Q Consensus 378 ~~~v~W~k~g~~l~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 439 (1075)
.....||++|+.+.. +.+.. .+...+-.-..+.....|.+++.+....|..-.+..+.|
T Consensus 6 ~v~H~W~~~g~~~~~---i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 6 TVYHRWYKNGKLVAR---IPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEEECCEEEEE---EEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 356899999986632 22211 233333333444568999999999998888766655544
No 432
>KOG0200|consensus
Probab=57.51 E-value=1.7e+02 Score=35.29 Aligned_cols=108 Identities=24% Similarity=0.192 Sum_probs=61.9
Q ss_pred EEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeee-ecCceeeccCCeEEEEEEEecCCCcEEEEEECC
Q psy16863 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND 387 (1075)
Q Consensus 309 ~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g 387 (1075)
.+.+..+...+.|.|+|.+.| . .....+. ......+.+.. .+.......+....+ +...+.+.+.|.+..
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~--~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 84 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN--I--NLIISLD--DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTNL 84 (609)
T ss_pred eEEEEEEEecCCccEEEEEec--C--ceeeEee--cccCcccccccCCCCCcceeeccccee---eeecCCCcceeeeee
Confidence 678888889999999999999 1 1222222 11111222222 223334455555555 222336678887655
Q ss_pred Eec----CCCC------------cEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863 388 RKL----EENK------------IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426 (1075)
Q Consensus 388 ~~l----~~~~------------~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n 426 (1075)
... .... ..... ++....+.+.++...+.|.|.|...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 85 EIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred cccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 311 0000 00011 34556788999999999999999866
No 433
>PHA03052 Hypothetical protein; Provisional
Probab=56.65 E-value=35 Score=26.61 Aligned_cols=35 Identities=20% Similarity=0.490 Sum_probs=27.8
Q ss_pred CceeeccCCeEEEEEEEe-cC--CCcEEEEEECCEecC
Q psy16863 357 HDIAVKVGTRARLLVEIR-SP--TEIKIHWYRNDRKLE 391 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~-g~--p~~~v~W~k~g~~l~ 391 (1075)
..+.+..|.+++|.|.+. |. ..+.|.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 456788899999999983 33 367899999998883
No 434
>PHA03189 UL14 tegument protein; Provisional
Probab=55.48 E-value=1.4e+02 Score=31.13 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=42.9
Q ss_pred ceEeecCCeEEEEEEEecCCCCc-eE--E---EEe----------CCeEEec-------CCcEEEEEcCCc-eEEEEEee
Q psy16863 559 NVKAKIGTSAILECQVLVPPWPR-SI--Y---WYN----------KEGVVEA-------SDKYHIMADGLG-GYSIEINY 614 (1075)
Q Consensus 559 ~~~v~~G~~~~L~C~~~~~p~p~-~v--~---W~~----------~~~~i~~-------~~~~~~~~~~~~-~~~L~i~~ 614 (1075)
...+..|+.+++.|.+.....|. .| . |-- .|+.+.. ...+.+..-+.. .++|++ +
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF-~ 139 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF-R 139 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE-E
Confidence 34567899999999998776662 11 1 211 1222221 122333322221 234554 4
Q ss_pred eeecCCceEEEEEECCCCc
Q psy16863 615 LEAVDDGEWKCVATSSSGV 633 (1075)
Q Consensus 615 ~~~~d~G~Y~C~a~n~~g~ 633 (1075)
+..+-+|.|.|+..|..-.
T Consensus 140 v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 140 VSTSTAGMYECVLRNETHG 158 (348)
T ss_pred EEecccceEEEEeccccce
Confidence 7788899999999997643
No 435
>KOG0200|consensus
Probab=53.25 E-value=2.1e+02 Score=34.52 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=24.5
Q ss_pred cEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITS 834 (1075)
Q Consensus 803 ~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s 834 (1075)
....+.+.++...+.|.|.|.+.+..+.....
T Consensus 115 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 146 (609)
T KOG0200|consen 115 TFESGLIYNVSLTEAGEYLCWTGRTVGDGPNK 146 (609)
T ss_pred ceEeeeeeccChhhcceeeccCCCcccccccc
Confidence 35578999999999999999998744443333
No 436
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=51.64 E-value=43 Score=28.34 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=34.3
Q ss_pred eEEEEEE-EecCCCCeEEEEEC--CEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeC
Q psy16863 765 EFKFTVQ-VSISPEPKVSWFRD--DQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATND 827 (1075)
Q Consensus 765 ~~~l~C~-v~g~p~p~v~W~k~--g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~ 827 (1075)
.+.-.|. +.|.|++.|+|.-+ |.. ..+.....+| .+.+.+-.....|.-.-+|++.-.
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 3455788 66899999999632 321 1111111112 234556666777888888888654
No 437
>PHA03240 envelope glycoprotein M; Provisional
Probab=46.16 E-value=23 Score=34.29 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=38.6
Q ss_pred ceeeccCCeEEEEEEEecCCCcEEEEEE-------CC-E---ec---CC--CCc----------EEEEEcCCEEEEEEcc
Q psy16863 358 DIAVKVGTRARLLVEIRSPTEIKIHWYR-------ND-R---KL---EE--NKI----------YRTQHDGNFYFIDLSS 411 (1075)
Q Consensus 358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k-------~g-~---~l---~~--~~~----------~~~~~~g~~~~L~I~~ 411 (1075)
.+.+++|++|+|...---.|.-.+.||+ ++ . +| .+ ..+ ..+...-..++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 3567789999987543224567999998 21 1 11 01 011 0111111224688999
Q ss_pred cCCCCceeEEEE
Q psy16863 412 VSLFDSGRWTCL 423 (1075)
Q Consensus 412 v~~~d~G~Y~C~ 423 (1075)
+..+|.|+|.-.
T Consensus 112 vn~sd~~nYcr~ 123 (258)
T PHA03240 112 LNLSDAGEYCRK 123 (258)
T ss_pred EeecCcchhhhc
Confidence 999999999544
No 438
>PHA03189 UL14 tegument protein; Provisional
Probab=43.67 E-value=90 Score=32.51 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEE
Q psy16863 492 IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA 527 (1075)
Q Consensus 492 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v 527 (1075)
.++|+++ +..+-+|.|.|...|....-.....+.|
T Consensus 133 ~ltLtF~-v~t~taG~Y~CvLrN~tHglv~~rf~iv 167 (348)
T PHA03189 133 RLTLTFR-VSTSTAGMYECVLRNETHGLVLQRFVIV 167 (348)
T ss_pred EEEEEEE-EEecccceEEEEeccccceeeeEEeeee
Confidence 3345544 3345589999999996544333333333
No 439
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=43.12 E-value=46 Score=25.85 Aligned_cols=21 Identities=33% Similarity=0.860 Sum_probs=15.6
Q ss_pred eccCCeEEEEEEEecCCCcEEEEEE
Q psy16863 361 VKVGTRARLLVEIRSPTEIKIHWYR 385 (1075)
Q Consensus 361 v~~G~~v~l~C~~~g~p~~~v~W~k 385 (1075)
|..|++++|. |.+...|.|||
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 5678888774 66667899994
No 440
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=40.54 E-value=1.1e+02 Score=25.95 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=35.7
Q ss_pred EEEEEE-EecCCCcEEEEEEC--CEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863 367 ARLLVE-IRSPTEIKIHWYRN--DRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437 (1075)
Q Consensus 367 v~l~C~-~~g~p~~~v~W~k~--g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 437 (1075)
+.-.|. +.|.|++.|+|.-+ |.. . ....-..+|.. +.+.+-.....|.-..+|.+.+..-....+..|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e--tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E--FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e--eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 345787 47899999999742 221 0 00001112222 123344445566668999998764333333333
No 441
>PHA03240 envelope glycoprotein M; Provisional
Probab=38.64 E-value=38 Score=32.94 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=43.4
Q ss_pred eeeeecCCeEEEEEEEecCCCCeEEEEE-------C-C---EEee---c---CC---------cEEEEEeeCcEEEEEEc
Q psy16863 757 SCQATVNEEFKFTVQVSISPEPKVSWFR-------D-D---QQVV---E---SD---------NVKILKETLGVCHLKIH 810 (1075)
Q Consensus 757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k-------~-g---~~i~---~---~~---------~~~~~~~~~~~~~L~I~ 810 (1075)
.+.+.+|.+|+|-..---.|.-.+.||+ + | .+|- . +. ...+... ...++|.|-
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~-C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYE-CHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEE-eccceEEEE
Confidence 4567889999987654335667899998 1 1 1221 0 00 1111111 124589999
Q ss_pred cccCCCCeEEEEEEEeCCce
Q psy16863 811 ALEVADQAEWKCIATNDFGQ 830 (1075)
Q Consensus 811 ~~~~~D~G~Y~C~A~N~~G~ 830 (1075)
++..+|.|+|.-.---..|.
T Consensus 111 ~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 111 HLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred EEeecCcchhhhccCCCCCC
Confidence 99999999995443333344
No 442
>PHA03112 IL-18 binding protein; Provisional
Probab=38.16 E-value=1.3e+02 Score=27.69 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=40.0
Q ss_pred eccCCeEEEEEEEecC-CC-cEEEEEECC-EecCCC-------------CcEEEEEcCCEEEEEEcccCCC-CceeEEEE
Q psy16863 361 VKVGTRARLLVEIRSP-TE-IKIHWYRND-RKLEEN-------------KIYRTQHDGNFYFIDLSSVSLF-DSGRWTCL 423 (1075)
Q Consensus 361 v~~G~~v~l~C~~~g~-p~-~~v~W~k~g-~~l~~~-------------~~~~~~~~g~~~~L~I~~v~~~-d~G~Y~C~ 423 (1075)
..+|+.+.|+|.+-+. |. .-+-|.+++ +.+.+. ........+-...|.+.+++.+ +.-.++|+
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 3569999999998654 43 578999776 332211 1111111233345666666644 22377787
Q ss_pred EEeCCCce
Q psy16863 424 AENAVGRS 431 (1075)
Q Consensus 424 a~n~~g~~ 431 (1075)
.....|..
T Consensus 115 L~D~~~~~ 122 (141)
T PHA03112 115 LMDLDGPI 122 (141)
T ss_pred EecCCchh
Confidence 76554443
No 443
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=32.99 E-value=3.1e+02 Score=23.33 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=47.8
Q ss_pred ecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434 (1075)
Q Consensus 355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s 434 (1075)
.|....|..|+++.+.|..+-..+..+-|--. -.+..+....+...+.+.+++. | ..-.|.+.=......++
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~------L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~ 80 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLETS------LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSAS 80 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEEESS------SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEE
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceEEEe------cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeE
Confidence 44567789999999999984333334444211 1122233344455677888885 4 57779887653344667
Q ss_pred EEEEeecCC
Q psy16863 435 CELSVLVPK 443 (1075)
Q Consensus 435 ~~l~V~~~~ 443 (1075)
+.++|.-+|
T Consensus 81 ~~ItVY~~P 89 (91)
T PF03921_consen 81 ANITVYKPP 89 (91)
T ss_dssp EEEEEEB--
T ss_pred EeeEEeCCC
Confidence 777777654
No 444
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=30.17 E-value=60 Score=25.05 Aligned_cols=44 Identities=16% Similarity=0.321 Sum_probs=26.5
Q ss_pred EEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEe
Q psy16863 865 NLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHN 914 (1075)
Q Consensus 865 ~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N 914 (1075)
+|.|.... ...+.||-||..|.--....+..... .++++|+-..
T Consensus 2 tltC~s~~--sLPiswYcN~TRLlRlt~~Tlt~~~l----tcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLLRLTQQTLTVVTL----TCNFTCVGQS 45 (71)
T ss_pred ceecCCCC--CCcccEEECCceeeeecCCeEeeeee----eEEeeecCCC
Confidence 46777532 33499999998775333333333222 6899997543
No 445
>PHA03112 IL-18 binding protein; Provisional
Probab=29.53 E-value=2e+02 Score=26.53 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=38.4
Q ss_pred ecCCeEEEEEEEecC-CCCceEEEEeCC-eEEecC-------------CcEEEEEcCCceEEEEEeeeeec-CCceEEEE
Q psy16863 563 KIGTSAILECQVLVP-PWPRSIYWYNKE-GVVEAS-------------DKYHIMADGLGGYSIEINYLEAV-DDGEWKCV 626 (1075)
Q Consensus 563 ~~G~~~~L~C~~~~~-p~p~~v~W~~~~-~~i~~~-------------~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~ 626 (1075)
.+|+.+.|+|.+-+. |.-.-+.|..++ +..... .+.+-. .+.-.+.|.+.+++.+ ..-.++|+
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~-~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTC-DNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCcccccc-CCcceeEEEEEecCCcceecceEEE
Confidence 459999999999855 433468999766 322211 111111 1112345666666643 33377777
Q ss_pred EECCCCc
Q psy16863 627 ATSSSGV 633 (1075)
Q Consensus 627 a~n~~g~ 633 (1075)
.....|.
T Consensus 115 L~D~~~~ 121 (141)
T PHA03112 115 LMDLDGP 121 (141)
T ss_pred EecCCch
Confidence 7655443
No 446
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=29.42 E-value=1.3e+02 Score=23.39 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=14.4
Q ss_pred eecCCeEEEEEEEecCCCCeEEEEE
Q psy16863 760 ATVNEEFKFTVQVSISPEPKVSWFR 784 (1075)
Q Consensus 760 ~~~g~~~~l~C~v~g~p~p~v~W~k 784 (1075)
+..|+.++|. |.|...|+|||
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4567777775 44556799983
No 447
>KOG4289|consensus
Probab=28.30 E-value=1.5e+03 Score=29.93 Aligned_cols=481 Identities=15% Similarity=0.162 Sum_probs=203.0
Q ss_pred cccCCCCCEEEEEEEEeCCee-----EEEEEEEEEecCCCCCCeeeeecCceeeccCCeE-EEEEEEec-----CCCcEE
Q psy16863 313 RRVRRDDGGRYSVTASNESGY-----STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA-RLLVEIRS-----PTEIKI 381 (1075)
Q Consensus 313 ~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v-~l~C~~~g-----~p~~~v 381 (1075)
..+..+++ .|+-+.+-..|. ......++|..-....|.|+..+...++.+.... .+.|++.. .+...+
T Consensus 435 ~plD~e~~-~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l 513 (2531)
T KOG4289|consen 435 EPLDFENS-EYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARL 513 (2531)
T ss_pred ccccccCC-eeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccce
Confidence 34555666 776665543221 2223335665555567888887766666654432 34555532 223344
Q ss_pred EEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC-CCc--eeeEEEEEeecCCC-CCCCeeeeecce-
Q psy16863 382 HWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA-VGR--SHCSCELSVLVPKA-YKAPFFTKELEA- 456 (1075)
Q Consensus 382 ~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~-~g~--~~~s~~l~V~~~~~-~~~p~~~~~~~~- 456 (1075)
+..--|. ..+.+..+....+ .-..+..+..-.|...+... .|. ..++..+.|.+.+. -..|.|..+...
T Consensus 514 ~y~laG~-----~pf~I~~~SG~It-vtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl 587 (2531)
T KOG4289|consen 514 HYSLAGV-----GPFQINNGSGWIT-VTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTL 587 (2531)
T ss_pred eeeeccC-----CCeeEecCCceEE-EeecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEE
Confidence 4433332 1223332222211 11223444444555544322 122 23444455544332 123444433221
Q ss_pred ----EEecCCe-EEEEEEEECCCCCeEEEEeCCEe------cc--CCCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEE
Q psy16863 457 ----ILTEQGT-VSLECKVMGIPTPQLIWYKDNKK------IK--AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523 (1075)
Q Consensus 457 ----~~~~g~~-v~l~C~~~g~p~~~v~W~~~g~~------l~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 523 (1075)
-...|.+ ++++..- ......++.-..|.. |. .+....+..........+.|...++-..|.-....
T Consensus 588 ~inED~pvgsSI~tvtAvD-~d~~s~ityqi~g~ntrn~Fsi~si~g~Glitlalp~dkKqe~~~vl~vtAtDg~l~d~~ 666 (2531)
T KOG4289|consen 588 RINEDAPVGSSIVTVTAVD-RDANSVITYQITGGNTRNRFSISSIGGGGLITLALPLDKKQERQYVLAVTATDGTLQDTC 666 (2531)
T ss_pred EecCCccccceEEEEEEec-cccccceEEEecCCcccccceeeccCCcceEEeecchhhcccceEEEEEEecCCccccce
Confidence 1223333 2333221 122223333322211 11 11111222223444556778766665555444333
Q ss_pred --EEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCe-----EEEEEEEecCCCCceEEEEeCCeEEecCC
Q psy16863 524 --RVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTS-----AILECQVLVPPWPRSIYWYNKEGVVEASD 596 (1075)
Q Consensus 524 --~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~-----~~L~C~~~~~p~p~~v~W~~~~~~i~~~~ 596 (1075)
.+.+.+.. ...|.|...+-.+.+.+-++ ++|...-...+....|+....+..
T Consensus 667 ~V~v~I~dan----------------ThrpvFqs~pfTvsI~e~rP~G~tvvtlsasd~D~geNARI~y~led~~----- 725 (2531)
T KOG4289|consen 667 SVNVNITDAN----------------THRPVFQSSPFTVSINEDRPLGTTVVTLSASDEDTGENARITYILEDEA----- 725 (2531)
T ss_pred EEEEEeeecc----------------cCCcccccCCeeEeeccCCcCCceeEEEecccCCCCccceEEEEecccc-----
Confidence 45544321 12344444444444444332 234433333333345655332221
Q ss_pred cEEEEEcCCceEEEEEeeeeecCCceEEEEEECCC-C-ceeeeeEEEEEeCCC-CcCCCceeeccce-eeecCC---eEE
Q psy16863 597 KYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSS-G-VKQFSAAYVHVLMPK-NYRKPRFVESLKA-VMTDDG---LVS 669 (1075)
Q Consensus 597 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g-~~~~~~~~l~v~~p~-~~~~p~~~~~~~~-~~~~g~---~~~ 669 (1075)
+++..+ ++...+...+..+|.-.|+-...... | .....+..+.|.+.. +-..|.|..+.-. .+.+.. +..
T Consensus 726 -Frid~d--sg~i~t~~~ld~edqvtytl~itA~D~~~pq~adtttveV~v~diNDnaPqf~assyt~sV~Ed~Pv~Tsv 802 (2531)
T KOG4289|consen 726 -FRIDPD--SGAIYTQAELDYEDQVTYTLAITARDNGIPQKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAPVFTSV 802 (2531)
T ss_pred -eeecCC--CCceEEeeeeecccceeeEeeeeecCCCCCCcCccEEEEEEeecccccCcccchhhceeEeecCCCCcceE
Confidence 233222 23345556667777777776544221 1 111122344444321 2234555443321 222222 334
Q ss_pred EEEEEec---CCCCeEEEEECCEEcCCCCeEEEee------------cCCCceEEEEEE-----ecCceEEEEEEEEEEe
Q psy16863 670 FECKVVG---FPTPTLQWFKDNEELKPGDVYQLTG------------TSSLGSYCCVAK-----NVMGKAESSTQLTIED 729 (1075)
Q Consensus 670 l~C~v~g---~p~p~v~W~k~g~~l~~~~~~~~~~------------~~d~G~Y~C~a~-----N~~g~~~~~~~l~V~~ 729 (1075)
|...+.. .|.-.+..+.+|..-.+++ |.+.. .+....|...|. |.--++...++++|.+
T Consensus 803 lQVSatDaD~g~Ng~v~y~~qg~~d~p~~-F~IEptSGviRtl~rLdRE~~avy~L~a~avDrg~p~ls~~~eItvtvld 881 (2531)
T KOG4289|consen 803 LQVSATDADSGPNGRVYYTFQGGDDGPGD-FYIEPTSGVIRTLRRLDRENVAVYVLAAYAVDRGNPPLSAPVEITVTVLD 881 (2531)
T ss_pred EEEEEeccCCCCCceEEEEecCCCCCCCc-eEEccCcceeehhhhhcchheeEEEEEEEEeeCCCCCcCCceEEEEEEEe
Confidence 4444432 2333455555544333332 22221 122344544332 2222333445566655
Q ss_pred ccccCchhhhhhhccCCCCCeEEeccceeeeecC----CeEEEEEEEe--cCCCCeEEEEECCEEeecCCcEEEEEeeCc
Q psy16863 730 IRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVN----EEFKFTVQVS--ISPEPKVSWFRDDQQVVESDNVKILKETLG 803 (1075)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g----~~~~l~C~v~--g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~ 803 (1075)
+- ..||.|-..--+..+.++ ..+.+--..+ ..|.+.|++..-|..+..- +++.. ..+
T Consensus 882 vN--------------DnaPvfe~~e~e~~I~enspvgs~va~i~a~dpdEG~NA~IsYqIvgg~d~~~--fq~de-~~~ 944 (2531)
T KOG4289|consen 882 VN--------------DNAPVFEQDELELFIEENSPVGSVVALITADDPDEGPNAHISYQIVGGNDPEL--FQLDE-FSG 944 (2531)
T ss_pred cC--------------CCCCCCCCcceeeEEeecCccceeeEEEEccCCCcCCcceEEEeeccCccHHH--HHHHH-hhh
Confidence 42 256666554434444443 3333222211 2355677776544433211 11100 001
Q ss_pred EEEEEEccccCC-CCeEEEEEEEeCCceEEEEEEEEEEecCC
Q psy16863 804 VCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNVPKH 844 (1075)
Q Consensus 804 ~~~L~I~~~~~~-D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~ 844 (1075)
-.|..-.+..+ +.-+|.-+..|..+...+.+.+.+++.+.
T Consensus 945 -~lla~~efdyef~~~eyv~~~qats~plvS~atv~i~vsd~ 985 (2531)
T KOG4289|consen 945 -ELLALVEFDYEFTRVEYVLVVQATSAPLVSRATVHIRVSDQ 985 (2531)
T ss_pred -hhhhheeehhhhccceeeEEeeccccccccceeEEEEeccc
Confidence 01223333444 56678888888888887878777776543
No 448
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=26.48 E-value=4e+02 Score=22.64 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=48.6
Q ss_pred eeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCce
Q psy16863 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVK 634 (1075)
Q Consensus 555 ~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 634 (1075)
..|....|..|+++.+.|..+- +.|..+.|-- .-.-.....|.+-..+.+.+++. | ..-.|.+.-. |..
T Consensus 8 v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET-------~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~-g~Q 76 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLET-------SLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCS-GEQ 76 (91)
T ss_dssp EESSEEEEETTEEEEEEEEESS-SS-SEEEEES-------SSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEET-TEE
T ss_pred EECCccEECCCCCEEEEEcCCC-CCCCcceEEE-------ecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcC-CeE
Confidence 3456677899999999999864 3354555532 11222333344445677888886 3 5777888753 555
Q ss_pred eeeeEEEEEeCCC
Q psy16863 635 QFSAAYVHVLMPK 647 (1075)
Q Consensus 635 ~~~~~~l~v~~p~ 647 (1075)
......+.|..+|
T Consensus 77 ~~~~~~ItVY~~P 89 (91)
T PF03921_consen 77 SSASANITVYKPP 89 (91)
T ss_dssp EEEEEEEEEEB--
T ss_pred EEeEEeeEEeCCC
Confidence 4455667776553
No 449
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=23.39 E-value=1.4e+02 Score=28.48 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=25.2
Q ss_pred CCeEEEEEceeccCCCeEEEEEEEcCceeEEEEEEE
Q psy16863 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 233 (1075)
Q Consensus 198 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 233 (1075)
+....|.|++.+.+|+|.|..++.-.......-+.+
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~ 156 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRL 156 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEECCCCCCcEEEE
Confidence 334579999999999999988886544333333333
No 450
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=22.05 E-value=4.4e+02 Score=22.23 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=24.7
Q ss_pred CceeeccCCeEEEEEEEe--cCC---CcEEEEEECCEec
Q psy16863 357 HDIAVKVGTRARLLVEIR--SPT---EIKIHWYRNDRKL 390 (1075)
Q Consensus 357 ~~~~v~~G~~v~l~C~~~--g~p---~~~v~W~k~g~~l 390 (1075)
....+..|+.++|...+. |.. ...+.||.+|..+
T Consensus 11 ~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~ 49 (101)
T PF07705_consen 11 SPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV 49 (101)
T ss_dssp C-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee
Confidence 345677899999999884 322 3488999999876
No 451
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=21.02 E-value=1.9e+02 Score=27.60 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.9
Q ss_pred eEEEEEcccccCCCeEEEEEEEcCC
Q psy16863 93 RTELNIRRVRRDDGGRYSVTASNES 117 (1075)
Q Consensus 93 ~~~L~I~~~~~~d~G~Y~c~a~n~~ 117 (1075)
..-|+|.+.+++|+|.|..++.=..
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECC
Confidence 4579999999999999998876443
Done!