RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16863
(1075 letters)
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 75.4 bits (186), Expect = 2e-16
Identities = 24/90 (26%), Positives = 49/90 (54%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
P F ++ D+ V+ G AR + + + W+++ + L + ++ ++G Y + +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
S+V D G++TC+A N+ G + S EL+V
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 75.0 bits (185), Expect = 2e-16
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 848 PKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
PKF ++ K + EG + C V G P PT+ WFKDG+ L++ D K+ E GT L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTY-EGGTYTLT 59
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
G YTC A N G +SA L
Sbjct: 60 ISNVQPDDEGKYTCVATNSAGEAEASAEL 88
Score = 73.4 bits (181), Expect = 7e-16
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
PKF + K + E +FT V+ P+P VSWF+D Q + SD K+ E G L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEG-GTYTLT 59
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLK 838
I ++ D+ ++ C+ATN G++ S L
Sbjct: 60 ISNVQPDDEGKYTCVATNSAGEAEASAELT 89
Score = 73.4 bits (181), Expect = 8e-16
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 14/90 (15%)
Query: 652 PRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
P+F + K V +G F C V G P PT+ WFKD + L+ D +++T GT +L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 706 --------GSYCCVAKNVMGKAESSTQLTI 727
G Y CVA N G+AE+S +LT+
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 62.7 bits (153), Expect = 4e-12
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI-FGNRF 192
P F ++ D+ V+ G AR + P + D P+ +RF
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKD-------------GQPLRSSDRF 47
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+ G L I V+ DD G+Y+ A+N +G + A EL+V
Sbjct: 48 KVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 62.7 bits (153), Expect = 4e-12
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI-FGNRF 299
P F ++ D+ V+ G AR + P + D P+ +RF
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKD-------------GQPLRSSDRF 47
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+ G L I V+ DD G+Y+ A+N +G + A EL+V
Sbjct: 48 KVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 61.5 bits (150), Expect = 1e-11
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 448 PFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL- 505
P FT++ + + + E + C V G P P + W+KD + +++ D F +T +L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGT-YTLT 59
Query: 506 ---------GTYTCEAVNCMGAAFSTSRVI 526
G YTC A N G A +++ +
Sbjct: 60 ISNVQPDDEGKYTCVATNSAGEAEASAELT 89
Score = 54.6 bits (132), Expect = 3e-09
Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
P F ++ ++V+ + G SA C V P P ++ W+ + +SD++ + +G G Y++
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDP-TVSWFKDGQPLRSSDRFKVTYEG-GTYTL 58
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
I+ ++ D+G++ CVAT+S+G + ++A + V
Sbjct: 59 TISNVQPDDEGKYTCVATNSAG-EAEASAELTV 90
Score = 52.3 bits (126), Expect = 2e-08
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
+RF+ G L I V+ DD G+Y+ A+N +G + A EL+V
Sbjct: 44 SDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P + W+KD + +++ D F +T +L G YTC A N G A +
Sbjct: 26 GDPDPTVSWFKDGQPLRSSDRFKVTYEGGT-YTLTISNVQPDDEGKYTCVATNSAGEAEA 84
Query: 52 TSRVI 56
++ +
Sbjct: 85 SAELT 89
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 52.9 bits (127), Expect = 1e-08
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIY 908
EG +V L C+ G P P + W+K G +L A +S T L G Y
Sbjct: 7 KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66
Query: 909 TCEAHNCMGTTSSSAAL 925
TC A N G+ SS L
Sbjct: 67 TCAATNSSGSASSGTTL 83
Score = 51.4 bits (123), Expect = 4e-08
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
E + + S SP P+V+W++ +++ + + L I + D
Sbjct: 6 VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65
Query: 820 WKCIATNDFGQSITSCFLKLNV 841
+ C ATN G S L V
Sbjct: 66 YTCAATNSSGS--ASSGTTLTV 85
Score = 50.6 bits (121), Expect = 6e-08
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRND-RKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
+ VK G L E ++ WY+ + L E+ + G+ + +S+V+ D
Sbjct: 3 SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 417 SGRWTCLAENAVGRSHCSCELSV 439
SG +TC A N+ G + L+V
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
Score = 49.4 bits (118), Expect = 2e-07
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDN-EELKPGDVYQLT---GTSSL----------GSYCCVAK 713
V+ C+ G P P + W+K + L + ++ TS+L G+Y C A
Sbjct: 12 VTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71
Query: 714 NVMGKAESSTQLTI 727
N G A S T LT+
Sbjct: 72 NSSGSASSGTTLTV 85
Score = 47.9 bits (114), Expect = 6e-07
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDG 213
+ V+ + C+ + ++ QG + RF + L I V +D
Sbjct: 4 VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63
Query: 214 GRYSVTASNESGYSTAKFELSV 235
G Y+ A+N SG +++ L+V
Sbjct: 64 GTYTCAATNSSGSASSGTTLTV 85
Score = 47.9 bits (114), Expect = 6e-07
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 262 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDG 320
+ V+ + C+ + ++ QG + RF + L I V +D
Sbjct: 4 VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63
Query: 321 GRYSVTASNESGYSTAKFELSV 342
G Y+ A+N SG +++ L+V
Sbjct: 64 GTYTCAATNSSGSASSGTTLTV 85
Score = 46.7 bits (111), Expect = 1e-06
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDN-KKIKAGDIFALTANPKDPSSL----------GTYTC 510
+V+L C+ G P P++ WYK K + F+++ + S+L GTYTC
Sbjct: 10 ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGST-STLTISNVTPEDSGTYTC 68
Query: 511 EAVNCMGAAFSTSRVI 526
A N G+A S + +
Sbjct: 69 AATNSSGSASSGTTLT 84
Score = 43.6 bits (103), Expect = 2e-05
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 75 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
G RF + L I V +D G Y+ A+N SG +++ L+V
Sbjct: 32 GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
Score = 42.9 bits (101), Expect = 4e-05
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGYSIEINYLE 616
+V K G S L C+ P P + WY ++ S ++ + G ++ I+ +
Sbjct: 2 PSVTVKEGESVTLSCEASGSP-PPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNVT 59
Query: 617 AVDDGEWKCVATSSSGVKQFSAAYVHV 643
D G + C AT+SSG S + V
Sbjct: 60 PEDSGTYTCAATNSSGSA-SSGTTLTV 85
Score = 35.9 bits (83), Expect = 0.011
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 2 GIPTPQLIWYKDN-KKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
G P P++ WYK K + F+++ + S+L GTYTC A N G+A
Sbjct: 20 GSPPPEVTWYKQGGKLLAESGRFSVSRSGST-STLTISNVTPEDSGTYTCAATNSSGSAS 78
Query: 51 STSRVI 56
S + +
Sbjct: 79 SGTTLT 84
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 52.9 bits (127), Expect = 1e-08
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIY 908
EG +V L C+ G P P + W+K G +L A +S T L G Y
Sbjct: 7 KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66
Query: 909 TCEAHNCMGTTSSSAAL 925
TC A N G+ SS L
Sbjct: 67 TCAATNSSGSASSGTTL 83
Score = 51.4 bits (123), Expect = 4e-08
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
E + + S SP P+V+W++ +++ + + L I + D
Sbjct: 6 VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65
Query: 820 WKCIATNDFGQSITSCFLKLNV 841
+ C ATN G S L V
Sbjct: 66 YTCAATNSSGS--ASSGTTLTV 85
Score = 50.6 bits (121), Expect = 6e-08
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRND-RKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
+ VK G L E ++ WY+ + L E+ + G+ + +S+V+ D
Sbjct: 3 SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 417 SGRWTCLAENAVGRSHCSCELSV 439
SG +TC A N+ G + L+V
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
Score = 49.4 bits (118), Expect = 2e-07
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDN-EELKPGDVYQLT---GTSSL----------GSYCCVAK 713
V+ C+ G P P + W+K + L + ++ TS+L G+Y C A
Sbjct: 12 VTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71
Query: 714 NVMGKAESSTQLTI 727
N G A S T LT+
Sbjct: 72 NSSGSASSGTTLTV 85
Score = 47.9 bits (114), Expect = 6e-07
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDG 213
+ V+ + C+ + ++ QG + RF + L I V +D
Sbjct: 4 VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63
Query: 214 GRYSVTASNESGYSTAKFELSV 235
G Y+ A+N SG +++ L+V
Sbjct: 64 GTYTCAATNSSGSASSGTTLTV 85
Score = 47.9 bits (114), Expect = 6e-07
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 262 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDG 320
+ V+ + C+ + ++ QG + RF + L I V +D
Sbjct: 4 VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63
Query: 321 GRYSVTASNESGYSTAKFELSV 342
G Y+ A+N SG +++ L+V
Sbjct: 64 GTYTCAATNSSGSASSGTTLTV 85
Score = 46.7 bits (111), Expect = 1e-06
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDN-KKIKAGDIFALTANPKDPSSL----------GTYTC 510
+V+L C+ G P P++ WYK K + F+++ + S+L GTYTC
Sbjct: 10 ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGST-STLTISNVTPEDSGTYTC 68
Query: 511 EAVNCMGAAFSTSRVI 526
A N G+A S + +
Sbjct: 69 AATNSSGSASSGTTLT 84
Score = 43.6 bits (103), Expect = 2e-05
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 75 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
G RF + L I V +D G Y+ A+N SG +++ L+V
Sbjct: 32 GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
Score = 42.9 bits (101), Expect = 4e-05
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGYSIEINYLE 616
+V K G S L C+ P P + WY ++ S ++ + G ++ I+ +
Sbjct: 2 PSVTVKEGESVTLSCEASGSP-PPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNVT 59
Query: 617 AVDDGEWKCVATSSSGVKQFSAAYVHV 643
D G + C AT+SSG S + V
Sbjct: 60 PEDSGTYTCAATNSSGSA-SSGTTLTV 85
Score = 35.9 bits (83), Expect = 0.011
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 2 GIPTPQLIWYKDN-KKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
G P P++ WYK K + F+++ + S+L GTYTC A N G+A
Sbjct: 20 GSPPPEVTWYKQGGKLLAESGRFSVSRSGST-STLTISNVTPEDSGTYTCAATNSSGSAS 78
Query: 51 STSRVI 56
S + +
Sbjct: 79 SGTTLT 84
>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig4_Neogenin: fourth
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 71
Score = 52.3 bits (125), Expect = 1e-08
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
+ FEC+V G PTPT++W K+ + + P D +++ +L G Y C+A+N +G
Sbjct: 2 IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61
Query: 718 KAESSTQLTI 727
++ QL I
Sbjct: 62 NVQAGAQLII 71
Score = 44.2 bits (104), Expect = 1e-05
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
F +V+ P P V W ++ V+ SD KI+KE +L++ L +D+ ++CIA ND
Sbjct: 4 FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH----NLQVLGLVKSDEGFYQCIAEND 59
Query: 828 FG 829
G
Sbjct: 60 VG 61
Score = 42.6 bits (100), Expect = 3e-05
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC------LGIYTCEAHNCMG 917
+ EC+V G P PT+KW K+G + D KI+ + G Y C A N +G
Sbjct: 2 IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61
Query: 918 TTSSSAALL 926
+ A L+
Sbjct: 62 NVQAGAQLI 70
Score = 31.9 bits (72), Expect = 0.20
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 569 ILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628
+ EC+V P P ++ W +V SD + I+ + +++++ L D+G ++C+A
Sbjct: 3 VFECEVTGKPTP-TVKWVKNGDMVIPSDYFKIVKE----HNLQVLGLVKSDEGFYQCIAE 57
Query: 629 SSSGVKQFSAAYV 641
+ G Q A +
Sbjct: 58 NDVGNVQAGAQLI 70
Score = 31.5 bits (71), Expect = 0.28
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK------DPSSLGTYTCEAVNCMG 517
+ EC+V G PTP + W K+ + D F + S G Y C A N +G
Sbjct: 2 IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61
Query: 518 AAFSTSRVI 526
+ +++I
Sbjct: 62 NVQAGAQLI 70
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit is
a repellant secreted by the neural cells in the midline.
Slit acts through Robo to prevent most neurons from
crossing the midline from either side. Three mammalian
Robo homologs (robo1, -2, and -3), and three mammalian
Slit homologs (Slit-1,-2, -3), have been identified.
Commissural axons, which cross the midline, express low
levels of Robo; longitudinal axons, which avoid the
midline, express high levels of Robo. robo1, -2, and -3
are expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 100
Score = 53.3 bits (128), Expect = 1e-08
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELK--------------AGDIH--KIISGED 900
++S+G L CK G P PT++W K+G+ L+ +G + +++ G
Sbjct: 12 IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRK 71
Query: 901 GTCCLGIYTCEAHNCMGTTSSSAALL 926
G G+Y C AHN +G S A L
Sbjct: 72 GRSDEGVYVCVAHNSLGEAVSRNASL 97
Score = 49.5 bits (118), Expect = 3e-07
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD--------------- 695
PR VE ++ G + CK G PTPT+QW K+ + L+
Sbjct: 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSL 61
Query: 696 -----VYQLTGTSSLGSYCCVAKNVMGKAESS 722
V+ G S G Y CVA N +G+A S
Sbjct: 62 FFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSR 93
Score = 38.3 bits (89), Expect = 0.002
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 457 ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK--------------AGDIFALTA--NPK 500
I+++ +L CK G PTP + W K+ + ++ +G +F L K
Sbjct: 12 IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRK 71
Query: 501 DPSSLGTYTCEAVNCMGAAFS 521
S G Y C A N +G A S
Sbjct: 72 GRSDEGVYVCVAHNSLGEAVS 92
Score = 37.5 bits (87), Expect = 0.005
Identities = 14/93 (15%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV----ESDNVKILKETLG 803
P+ +E + + + P P + W ++ Q + + + +I+ +
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60
Query: 804 VCHLKI-HALEV-ADQAEWKCIATNDFGQSITS 834
+ L++ H + +D+ + C+A N G++++
Sbjct: 61 LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSR 93
Score = 33.7 bits (77), Expect = 0.097
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH-----DGN 403
P + D+ V G A L + I W +N + LE +K H G+
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60
Query: 404 FYFIDL--SSVSLFDSGRWTCLAENAVG 429
+F+ + D G + C+A N++G
Sbjct: 61 LFFLRVVHGRKGRSDEGVYVCVAHNSLG 88
Score = 31.7 bits (72), Expect = 0.44
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 2 GIPTPQLIWYKDNKKIK--------------AGDIFALTA--NPKDPSSLGTYTCEAVNC 45
G PTP + W K+ + ++ +G +F L K S G Y C A N
Sbjct: 27 GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNS 86
Query: 46 MGAAFS 51
+G A S
Sbjct: 87 LGEAVS 92
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 52.1 bits (125), Expect = 2e-08
Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 850 FLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD---IHKIISGEDGTCCLG 906
L V+ EG V L C G P P W+KDG L + +S ED G
Sbjct: 3 VLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPNVSAEDS----G 58
Query: 907 IYTCEAHN-CMGTTSSSAAL 925
YTC A N G TS+ L
Sbjct: 59 TYTCVASNGGGGKTSNPVTL 78
Score = 45.9 bits (109), Expect = 3e-06
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 458 LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG--DIFALTANPKDPSSLGTYTCEAVN 514
+ E V+L C G P P WYKD + + F + +D GTYTC A N
Sbjct: 11 VFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPNVSAEDS---GTYTCVASN 66
Score = 42.4 bits (100), Expect = 4e-05
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---GS 707
KP S V+ + V+ C G P P W+KD L T S G+
Sbjct: 1 KPVLTPS-PTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPNVSAEDSGT 59
Query: 708 YCCVAKN-VMGKAESSTQLTI 727
Y CVA N GK + LT+
Sbjct: 60 YTCVASNGGGGKTSNPVTLTV 80
Score = 37.0 bits (86), Expect = 0.004
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 2 GIPTPQLIWYKDNKKIKAG--DIFALTANPKDPSSLGTYTCEAVN 44
G P P WYKD + + F + +D GTYTC A N
Sbjct: 25 GNPPPNYTWYKDGVPLSSSQNGFFTPNVSAEDS---GTYTCVASN 66
Score = 34.7 bits (80), Expect = 0.025
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
E+ T +P P +W++D + S N + D
Sbjct: 10 VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF-----------TPNVSAEDSG 58
Query: 819 EWKCIATNDFGQSITSCFLKLNV 841
+ C+A+N G TS + L V
Sbjct: 59 TYTCVASNG-GGGKTSNPVTLTV 80
Score = 34.3 bits (79), Expect = 0.031
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL 414
V G L WY++ L ++ N +F +VS
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQ--------NGFFT--PNVSA 54
Query: 415 FDSGRWTCLAENAVGRSHCSCELSVLV 441
DSG +TC+A N G S +++ V
Sbjct: 55 EDSGTYTCVASNGGG-GKTSNPVTLTV 80
Score = 29.3 bits (66), Expect = 2.2
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 157 VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRY 216
V + C N +++ + P+ + V +D G Y
Sbjct: 11 VFEGEDVTLTCSAPGNPPPNYTWY-KDGVPL---------SSSQNGFFTPNVSAEDSGTY 60
Query: 217 SVTASNES-GYSTAKFELSV 235
+ ASN G ++ L+V
Sbjct: 61 TCVASNGGGGKTSNPVTLTV 80
Score = 29.3 bits (66), Expect = 2.2
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 264 VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRY 323
V + C N +++ + P+ + V +D G Y
Sbjct: 11 VFEGEDVTLTCSAPGNPPPNYTWY-KDGVPL---------SSSQNGFFTPNVSAEDSGTY 60
Query: 324 SVTASNES-GYSTAKFELSV 342
+ ASN G ++ L+V
Sbjct: 61 TCVASNGGGGKTSNPVTLTV 80
>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig2_Robo: domain similar to the
second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 86
Score = 52.0 bits (125), Expect = 3e-08
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 559 NVKAKIGTSAILECQVLVPPW----PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
+ + +G A+LEC PP P + + + + +++ I+ DG ++ I
Sbjct: 5 DTQVAVGEMAVLECS---PPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG----NLLIAE 57
Query: 615 LEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
D+G +KCVAT+ G ++ +AA + V
Sbjct: 58 ARKSDEGTYKCVATNMVGERESAAARLSV 86
Score = 41.6 bits (98), Expect = 1e-04
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 775 SPEPKVSWFRDDQQVVESDN-VKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
PEP VSW +D Q + + V+I+ + +L I +D+ +KC+ATN G+ +
Sbjct: 24 HPEPTVSWRKDGQPLNLDNERVRIVDDG----NLLIAEARKSDEGTYKCVATNMVGERES 79
Query: 834 S 834
+
Sbjct: 80 A 80
Score = 39.7 bits (93), Expect = 5e-04
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 675 VGFPTPTLQWFKDNEELKPGD--VYQLTG---------TSSLGSYCCVAKNVMGKAESST 723
G P PT+ W KD + L + V + S G+Y CVA N++G+ ES+
Sbjct: 22 RGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81
Score = 39.3 bits (92), Expect = 8e-04
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 861 GGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCE 911
G LEC G P+PT+ W KDG+ L + I +DG + G Y C
Sbjct: 11 GEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV-DDGNLLIAEARKSDEGTYKCV 69
Query: 912 AHNCMGTTSSSAALL 926
A N +G S+AA L
Sbjct: 70 ATNMVGERESAAARL 84
Score = 36.6 bits (85), Expect = 0.006
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 452 KELEAILTEQGTVSLECKV-MGIPTPQLIWYKD-------NKKIKAGDIFALTANPKDPS 503
+ + + E LEC G P P + W KD N++++ D L S
Sbjct: 4 SDTQVAVGEMAV--LECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKS 61
Query: 504 SLGTYTCEAVNCMGA 518
GTY C A N +G
Sbjct: 62 DEGTYKCVATNMVGE 76
Score = 35.1 bits (81), Expect = 0.023
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 2 GIPTPQLIWYKD-------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGA 48
G P P + W KD N++++ D L S GTY C A N +G
Sbjct: 23 GHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGE 76
Score = 32.4 bits (74), Expect = 0.18
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 378 EIKIHWYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG-RSHCSC 435
E + W ++ + L +N+ R DGN ++ D G + C+A N VG R +
Sbjct: 26 EPTVSWRKDGQPLNLDNERVRIVDDGNLL---IAEARKSDEGTYKCVATNMVGERESAAA 82
Query: 436 ELSV 439
LSV
Sbjct: 83 RLSV 86
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 50.1 bits (120), Expect = 6e-08
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI---------ISGEDGTCCLGIYTC 910
EG +V L C G P P + W KDG+ L + +S ED G+YTC
Sbjct: 1 EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDS----GLYTC 56
Query: 911 EAHN 914
A N
Sbjct: 57 VAEN 60
Score = 48.9 bits (117), Expect = 1e-07
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF-----ALTANPKDPSSLGTYTCEAVN 514
+V+L C G P P + W KD K + + F LT G YTC A N
Sbjct: 3 QSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAEN 60
Score = 45.5 bits (108), Expect = 3e-06
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
V+ C G P P + W KD + L + + +G S+L G Y CVA+N G
Sbjct: 5 VTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAENSAG 63
Score = 43.5 bits (103), Expect = 1e-05
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
+ T +P P ++W +D + + ES+ L I ++ + D + C
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRF-----VASGSTLTIKSVSLEDSGLYTC 56
Query: 823 IATNDFG 829
+A N G
Sbjct: 57 VAENSAG 63
Score = 42.8 bits (101), Expect = 2e-05
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
I W ++ + L E+ R G+ + + SVSL DSG +TC+AEN+ G
Sbjct: 19 ITWLKDGKPLPES--NRFVASGST--LTIKSVSLEDSGLYTCVAENSAG 63
Score = 36.2 bits (84), Expect = 0.005
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIF-----ALTANPKDPSSLGTYTCEAVN 44
G P P + W KD K + + F LT G YTC A N
Sbjct: 12 EGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAEN 60
Score = 32.4 bits (74), Expect = 0.11
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 81 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 118
NRF A L I+ V +D G Y+ A N +G
Sbjct: 30 ESNRFVASGS----TLTIKSVSLEDSGLYTCVAENSAG 63
Score = 32.4 bits (74), Expect = 0.11
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 225
NRF A L I+ V +D G Y+ A N +G
Sbjct: 30 ESNRFVASGS----TLTIKSVSLEDSGLYTCVAENSAG 63
Score = 32.4 bits (74), Expect = 0.11
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 332
NRF A L I+ V +D G Y+ A N +G
Sbjct: 30 ESNRFVASGS----TLTIKSVSLEDSGLYTCVAENSAG 63
Score = 30.1 bits (68), Expect = 0.68
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 564 IGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEW 623
G S L C P P +I W + S+++ G ++ I + D G +
Sbjct: 1 EGQSVTLTCPAEGNPVP-NITWLKDGKPLPESNRFV-----ASGSTLTIKSVSLEDSGLY 54
Query: 624 KCVATSSSG 632
CVA +S+G
Sbjct: 55 TCVAENSAG 63
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 50.2 bits (119), Expect = 8e-08
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED---GTCCL----------GIYTC 910
V L C G P PT+ W K+G+ L + + ++ S G+ L G YTC
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 911 EAHNCMGTTSSSA 923
A N GT S+S
Sbjct: 61 VASNSAGTVSASV 73
Score = 49.8 bits (118), Expect = 1e-07
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQL-------TGTSSL----------GSYCC 710
V+ C G P PT+ W K+ + L + ++ +G+S+L G+Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 711 VAKNVMGKAESSTQ 724
VA N G +S
Sbjct: 61 VASNSAGTVSASVT 74
Score = 47.5 bits (112), Expect = 7e-07
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID----LSSVSLFDSGRWTC 422
L P I W +N + L + + R + +S+V+L DSG +TC
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 423 LAENAVGRSHCS 434
+A N+ G S
Sbjct: 61 VASNSAGTVSAS 72
Score = 45.6 bits (107), Expect = 3e-06
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIFA-------------LTANPKDPSSLGTYTC 510
V+L C G P P + W K+ K + + + LT + GTYTC
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 511 EAVN 514
A N
Sbjct: 61 VASN 64
Score = 44.0 bits (103), Expect = 1e-05
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKIL---KETLGVCHLKIHALEVADQAEWKCI 823
T S P P ++W ++ + + S ++ + G L I + + D + C+
Sbjct: 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61
Query: 824 ATNDFGQSITS 834
A+N G S
Sbjct: 62 ASNSAGTVSAS 72
Score = 37.9 bits (87), Expect = 0.002
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 164 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRRVRRDDGGRYSVT 219
+ C ++ G R + G + L I V +D G Y+
Sbjct: 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61
Query: 220 ASNESGYSTAKFE 232
ASN +G +A
Sbjct: 62 ASNSAGTVSASVT 74
Score = 37.9 bits (87), Expect = 0.002
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 271 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRRVRRDDGGRYSVT 326
+ C ++ G R + G + L I V +D G Y+
Sbjct: 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61
Query: 327 ASNESGYSTAKFE 339
ASN +G +A
Sbjct: 62 ASNSAGTVSASVT 74
Score = 37.5 bits (86), Expect = 0.003
Identities = 13/54 (24%), Positives = 20/54 (37%)
Query: 72 NRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 125
+ + R G + L I V +D G Y+ ASN +G +A
Sbjct: 21 GKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSASVT 74
Score = 37.1 bits (85), Expect = 0.004
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 568 AILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGL--GGYSIEINYLEAVDDGEWK 624
L C PP P +I W N + + + + G G ++ I+ + D G +
Sbjct: 1 VTLTCLASGPPPP-TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59
Query: 625 CVATSSSGVKQFSA 638
CVA++S+G S
Sbjct: 60 CVASNSAGTVSASV 73
Score = 34.8 bits (79), Expect = 0.020
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFA-------------LTANPKDPSSLGTYTCEAVN 44
G P P + W K+ K + + + LT + GTYTC A N
Sbjct: 9 GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASN 64
>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig3_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 69
Score = 48.9 bits (117), Expect = 2e-07
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQL---------TGTSSLGSYCCVAKNVMGK 718
V F+C+V G P PT+ W K++ EL G L GSY C A+N++GK
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60
Query: 719 AESSTQLTI 727
E+S LT+
Sbjct: 61 IEASASLTV 69
Score = 47.4 bits (113), Expect = 6e-07
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 15/72 (20%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAG----------DIHKIISGEDGTCCLGIYTCEAH 913
V +C+V G P PT+ W K+ EL G I + +G++G+ YTCEA
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGS-----YTCEAE 55
Query: 914 NCMGTTSSSAAL 925
N +G +SA+L
Sbjct: 56 NMVGKIEASASL 67
Score = 37.0 bits (86), Expect = 0.003
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAG-----DIFALTANPKDPSSLGTYTCEAVNCMGA 518
V +C+V G P P ++W K++ ++ G D +L G+YTCEA N +G
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60
Query: 519 AFSTSRVI 526
+++ +
Sbjct: 61 IEASASLT 68
Score = 32.4 bits (74), Expect = 0.12
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ W + D +L + + D + + + +V+ D G +TC AEN VG+ S L+V
Sbjct: 14 TVLWRKEDGELPKGR-AEILDDKS---LKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69
Score = 30.8 bits (70), Expect = 0.53
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 2 GIPTPQLIWYKDNKKIKAG-----DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
G P P ++W K++ ++ G D +L G+YTCEA N +G +++ +
Sbjct: 9 GDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68
Score = 28.1 bits (63), Expect = 3.8
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 91 DGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
GR E L IR V D G Y+ A N G A L+V
Sbjct: 26 KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69
Score = 28.1 bits (63), Expect = 3.8
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 198 DGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
GR E L IR V D G Y+ A N G A L+V
Sbjct: 26 KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69
Score = 28.1 bits (63), Expect = 3.8
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 305 DGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
GR E L IR V D G Y+ A N G A L+V
Sbjct: 26 KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 47.4 bits (113), Expect = 7e-07
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKN 714
G V ECK P PT+ W K E L + SL G Y C A+N
Sbjct: 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60
Query: 715 VMGKAESSTQLTI 727
GKA S+ L++
Sbjct: 61 FFGKANSTGSLSV 73
Score = 46.3 bits (110), Expect = 2e-06
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEA 912
GG V +ECK P+PT+ W K L +I DG+ + G YTC A
Sbjct: 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSS--RICIWPDGSLEILNVTKSDEGKYTCFA 58
Query: 913 HNCMGTTSSSAAL 925
N G +S+ +L
Sbjct: 59 ENFFGKANSTGSL 71
Score = 39.0 bits (91), Expect = 6e-04
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIK-AGDIF-----ALTANPKDPSSLGTYTCEAVNC 515
G V +ECK P P + W K + + + I +L S G YTC A N
Sbjct: 2 GDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENF 61
Query: 516 MGAAFST 522
G A ST
Sbjct: 62 FGKANST 68
Score = 35.5 bits (82), Expect = 0.010
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
+P+P +SW + + + S + I + L+I + +D+ ++ C A N FG++ ++
Sbjct: 13 APKPTISWSKGTELLTNSSRICIWPDG----SLEILNVTKSDEGKYTCFAENFFGKANST 68
Query: 835 CFL 837
L
Sbjct: 69 GSL 71
Score = 34.0 bits (78), Expect = 0.038
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
I W + L + DG+ +++ +V+ D G++TC AEN G+++ + LSV
Sbjct: 17 TISWSKGTELLTNSSRICIWPDGS---LEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73
Score = 29.3 bits (66), Expect = 1.7
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 2 GIPTPQLIWYKDNKKIK-AGDIF-----ALTANPKDPSSLGTYTCEAVNCMGAAFST 52
P P + W K + + + I +L S G YTC A N G A ST
Sbjct: 12 AAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANST 68
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of
peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted, and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells, which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 69
Score = 46.4 bits (110), Expect = 1e-06
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 776 PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835
PEP ++W +D QV ES I E +L I + VADQ ++C+A N G + S
Sbjct: 11 PEPTITWNKDGVQVTESGKFHISPEG----YLAIRDVGVADQGRYECVARNTIGYASVSM 66
Query: 836 FL 837
L
Sbjct: 67 VL 68
Score = 36.4 bits (84), Expect = 0.005
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 864 VNLECKVIGVPQPTLKWFKDGREL-KAGDIHKIISGEDGTCCL--------GIYTCEAHN 914
V + C G P+PT+ W KDG ++ ++G H IS +G + G Y C A N
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFH--IS-PEGYLAIRDVGVADQGRYECVARN 57
Query: 915 CMGTTSSSAAL 925
+G S S L
Sbjct: 58 TIGYASVSMVL 68
Score = 36.0 bits (83), Expect = 0.007
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----------GTSSLGSYCCVAKNVMG 717
V C G P PT+ W KD ++ + ++ G + G Y CVA+N +G
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60
Query: 718 KAESSTQLT 726
A S L+
Sbjct: 61 YASVSMVLS 69
Score = 30.2 bits (68), Expect = 0.71
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELS 127
L IR V D GRY A N GY++ LS
Sbjct: 38 LAIRDVGVADQGRYECVARNTIGYASVSMVLS 69
Score = 30.2 bits (68), Expect = 0.71
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELS 234
L IR V D GRY A N GY++ LS
Sbjct: 38 LAIRDVGVADQGRYECVARNTIGYASVSMVLS 69
Score = 30.2 bits (68), Expect = 0.71
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELS 341
L IR V D GRY A N GY++ LS
Sbjct: 38 LAIRDVGVADQGRYECVARNTIGYASVSMVLS 69
Score = 30.2 bits (68), Expect = 0.83
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIFA------LTANPKDPSSLGTYTCEAVNCMG 517
V + C G P P + W KD ++ F L + G Y C A N +G
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60
Query: 518 AAFSTSRVIA 527
A S S V++
Sbjct: 61 YA-SVSMVLS 69
Score = 30.2 bits (68), Expect = 0.86
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438
I W ++ ++ E+ + +G ++ + V + D GR+ C+A N +G + S LS
Sbjct: 15 ITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69
>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of
protein tyrosine kinase (PTK) 7, also known as CCK4.
Ig2_PTK7: domain similar to the second immunoglobulin
(Ig)-like domain in protein tyrosine kinase (PTK) 7,
also known as CCK4. PTK7 is a subfamily of the receptor
protein tyrosine kinase family, and is referred to as an
RPTK-like molecule. RPTKs transduce extracellular
signals across the cell membrane, and play important
roles in regulating cell proliferation, migration, and
differentiation. PTK7 is organized as an extracellular
portion having seven Ig-like domains, a single
transmembrane region, and a cytoplasmic tyrosine
kinase-like domain. PTK7 is considered a pseudokinase as
it has several unusual residues in some of the highly
conserved tyrosine kinase (TK) motifs; it is predicted
to lack TK activity. PTK7 may function as a
cell-adhesion molecule. PTK7 mRNA is expressed at high
levels in placenta, melanocytes, liver, lung, pancreas,
and kidney. PTK7 is overexpressed in several cancers,
including melanoma and colon cancer lines.
Length = 77
Score = 45.3 bits (107), Expect = 5e-06
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNC 915
V L C + G P+PT +WF+DG L G + +S ++ T L G+Y C AHN
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 916 MGTTSSS 922
G+ SS
Sbjct: 61 FGSVCSS 67
Score = 37.2 bits (86), Expect = 0.004
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPG-DVYQLT-----------GTSSLGSYCCVAKNV 715
V+ C + G P PT QWF+D L G Y ++ G G Y C A N
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 716 MGKAESSTQLTI 727
G SS T+
Sbjct: 61 FGSVCSSQNFTL 72
Score = 29.9 bits (67), Expect = 1.3
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIF--------ALTANPKDPSSLGTYTCEAVNC 515
V+L C + G P P W++D + G LT P G Y C A N
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 516 MGAAFST 522
G+ S+
Sbjct: 61 FGSVCSS 67
>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like:
domain similar to the third immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
IG-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains. Included in this group is
Drosophila LAR (DLAR).
Length = 69
Score = 44.9 bits (106), Expect = 6e-06
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSLGSYCCVAKNVMGK 718
G V+ C VG P P ++W K EEL D V +LT +Y CVA + +G
Sbjct: 2 GSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIYESANYTCVAISSLGM 61
Query: 719 AESSTQLT 726
E++ Q+T
Sbjct: 62 IEATAQVT 69
Score = 40.3 bits (94), Expect = 2e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGI-----YTCEAHNC 915
GG+VNL C +G P P +KW K G EL D + G + I YTC A +
Sbjct: 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV--GRNVLELTNIYESANYTCVAISS 58
Query: 916 MGTTSSSA 923
+G ++A
Sbjct: 59 LGMIEATA 66
Score = 29.5 bits (66), Expect = 1.4
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL---GTYTCEAVNCMGA 518
G+V+L C +G P P + W K +++ D + N + +++ YTC A++ +G
Sbjct: 2 GSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIYESANYTCVAISSLGM 61
Query: 519 AFSTSRV 525
+T++V
Sbjct: 62 IEATAQV 68
>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell
adhesion molecule contactin-2 and similar proteins.
Ig4_Contactin-2-like: fourth Ig domain of the neural
cell adhesion molecule contactin-2. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (aliases
TAG-1, axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. The
first four Ig domains form the intermolecular binding
fragment which arranges as a compact U-shaped module by
contacts between Ig domains 1 and 4, and domains 2 and
3. It has been proposed that a linear zipper-like array
forms, from contactin-2 molecules alternatively provided
by the two apposed membranes.
Length = 85
Score = 44.9 bits (106), Expect = 7e-06
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDGR--------ELKAGDIH-KIISGEDGTCCLGIY 908
G ++ ECK G P+P +W K+G+ E++AGD+ +S D G+Y
Sbjct: 11 ADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDS----GMY 66
Query: 909 TCEAHNCMGTTSSSAAL 925
C A N GT +SA L
Sbjct: 67 QCVAENKHGTIYASAEL 83
Score = 40.3 bits (94), Expect = 4e-04
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 670 FECKVVGFPTPTLQWFKDNEEL-KPGDVYQLTGT--------SSLGSYCCVAKNVMGKAE 720
+ECK G P P +W K+ + L + G S G Y CVA+N G
Sbjct: 19 WECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY 78
Query: 721 SSTQLTI 727
+S +L +
Sbjct: 79 ASAELAV 85
Score = 34.5 bits (79), Expect = 0.033
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 383 WYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
W +N + L EN+I D + +SL DSG + C+AEN G + S EL+V
Sbjct: 33 WLKNGQPLASENRIEVEAGDLRI-----TKLSLSDSGMYQCVAENKHGTIYASAELAV 85
Score = 32.2 bits (73), Expect = 0.25
Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
+ +A + ++ + S +P P W ++ Q + + +++ L+I L +
Sbjct: 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGD-----LRITKLSL 60
Query: 815 ADQAEWKCIATNDFGQSITSCFLKL 839
+D ++C+A N G S L +
Sbjct: 61 SDSGMYQCVAENKHGTIYASAELAV 85
>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor and similar
proteins. Ig2_FGFR_like: domain similar to the second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor. FGF receptors bind FGF signaling
polypeptides. FGFs participate in multiple processes
such as morphogenesis, development, and angiogenesis.
FGFs bind to four FGF receptor tyrosine kinases (FGFR1,
-2, -3, -4). Receptor diversity is controlled by
alternative splicing producing splice variants with
different ligand binding characteristics and different
expression patterns. FGFRs have an extracellular region
comprised of three Ig-like domains, a single
transmembrane helix, and an intracellular tyrosine
kinase domain. Ligand binding and specificity reside in
the Ig-like domains 2 and 3, and the linker region that
connects these two. FGFR activation and signaling depend
on FGF-induced dimerization, a process involving cell
surface heparin or heparin sulfate proteoglycans. This
group also contains fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 does not have a protein
tyrosine kinase domain at its C terminus; neither does
its cytoplasmic domain appear to interact with a
signaling partner. It has been suggested that FGFRL1 may
not have any direct signaling function, but instead acts
as a decoy receptor trapping FGFs and preventing them
from binding other receptors.
Length = 85
Score = 45.1 bits (107), Expect = 7e-06
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTC 910
G V L+C G P+PT+ W KDG+ K L G YTC
Sbjct: 9 GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTC 68
Query: 911 EAHNCMGT 918
N G+
Sbjct: 69 IVENKYGS 76
Score = 42.8 bits (101), Expect = 4e-05
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDI----------FALTANPKDPSSLGTYTCEA 512
TV L+C G P P + W KD K K + L PS G YTC
Sbjct: 11 TVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIV 70
Query: 513 VNCMGA 518
N G+
Sbjct: 71 ENKYGS 76
Score = 39.7 bits (93), Expect = 4e-04
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELK------PGDVYQLTGTSSL--------GSYCCVAK 713
V +C G P PT+ W KD + K V + T L G Y C+ +
Sbjct: 12 VRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVE 71
Query: 714 NVMG 717
N G
Sbjct: 72 NKYG 75
Score = 37.0 bits (86), Expect = 0.005
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK---IYRTQHDGNFYFIDLS 410
+RLH AV G+ RL I W ++ + ++ Y+ + + + L
Sbjct: 1 KRLH--AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKK--WTLILE 56
Query: 411 SVSLFDSGRWTCLAENAVGR 430
SV DSG++TC+ EN G
Sbjct: 57 SVVPSDSGKYTCIVENKYGS 76
Score = 33.1 bits (76), Expect = 0.10
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 2 GIPTPQLIWYKDNKKIKAGDI----------FALTANPKDPSSLGTYTCEAVNCMGA 48
G P P + W KD K K + L PS G YTC N G+
Sbjct: 20 GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76
Score = 30.0 bits (68), Expect = 1.4
Identities = 12/69 (17%), Positives = 27/69 (39%)
Query: 762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWK 821
+ S +P P ++W +D + + + K L + ++ +D ++
Sbjct: 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYT 67
Query: 822 CIATNDFGQ 830
CI N +G
Sbjct: 68 CIVENKYGS 76
Score = 29.3 bits (66), Expect = 2.3
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 171 LNNTIPFSFRAQGDHPIF------GNRFRAINRDGRTE-------LNIRRVRRDDGGRYS 217
+T+ A G+ G F+ +R G + L + V D G+Y+
Sbjct: 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYT 67
Query: 218 VTASNESGYSTAKFELSV 235
N+ G +++ V
Sbjct: 68 CIVENKYGSINHTYKVDV 85
Score = 29.3 bits (66), Expect = 2.3
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 278 LNNTIPFSFRAQGDHPIF------GNRFRAINRDGRTE-------LNIRRVRRDDGGRYS 324
+T+ A G+ G F+ +R G + L + V D G+Y+
Sbjct: 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYT 67
Query: 325 VTASNESGYSTAKFELSV 342
N+ G +++ V
Sbjct: 68 CIVENKYGSINHTYKVDV 85
Score = 28.5 bits (64), Expect = 3.9
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 82 GNRFRAINRDGRTE-------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
G F+ +R G + L + V D G+Y+ N+ G +++ V
Sbjct: 32 GKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like
domain of a follistatin-like molecule encoded by the
Mahya gene and similar proteins. Ig2_Follistatin_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in a follistatin-like molecule encoded by
the CNS-related Mahya gene. Mahya genes have been
retained in certain Bilaterian branches during
evolution. They are conserved in Hymenoptera and
Deuterostomes, but are absent from other metazoan
species such as fruit fly and nematode. Mahya proteins
are secretory, with a follistatin-like domain
(Kazal-type serine/threonine protease inhibitor domain
and EF-hand calcium-binding domain), two Ig-like
domains, and a novel C-terminal domain. Mahya may be
involved in learning and memory and in processing of
sensory information in Hymenoptera and vertebrates.
Follistatin is a secreted, multidomain protein that
binds activins with high affinity and antagonizes their
signaling.
Length = 76
Score = 44.5 bits (105), Expect = 7e-06
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 669 SFECKVVGFPTPTLQWFKDNEELKP--GDVYQLTGTSS-----------LGSYCCVAKNV 715
S C G P P L W K+ ++ P L S G+Y C+AKN
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61
Query: 716 MGKAESSTQLTIED 729
G E + L +ED
Sbjct: 62 AGVDEDISSLFVED 75
Score = 36.8 bits (85), Expect = 0.004
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 465 SLECKVMGIPTPQLIWYKDNKKI--KAGDIFALTANPK-------DPSSLGTYTCEAVNC 515
SL C GIP P+L W K+ I K L AN G YTC A N
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61
Query: 516 MG 517
G
Sbjct: 62 AG 63
Score = 32.2 bits (73), Expect = 0.18
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 17/75 (22%)
Query: 865 NLECKVIGVPQPTLKWFKDGRE----------LKAGDIHKIISG---EDGTCCLGIYTCE 911
+L C G+P P L W K+G + L A IS ED G YTC
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYED----TGAYTCI 57
Query: 912 AHNCMGTTSSSAALL 926
A N G ++L
Sbjct: 58 AKNEAGVDEDISSLF 72
Score = 30.3 bits (68), Expect = 0.80
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 2 GIPTPQLIWYKDNKKI--KAGDIFALTANPK-------DPSSLGTYTCEAVNCMG 47
GIP P+L W K+ I K L AN G YTC A N G
Sbjct: 9 GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG 63
Score = 29.1 bits (65), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 94 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
+EL+I VR +D G Y+ A NE+G L VE
Sbjct: 39 SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVEDS 76
Score = 29.1 bits (65), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
+EL+I VR +D G Y+ A NE+G L VE
Sbjct: 39 SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVEDS 76
Score = 29.1 bits (65), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+EL+I VR +D G Y+ A NE+G L VE
Sbjct: 39 SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVEDS 76
Score = 28.7 bits (64), Expect = 3.3
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 568 AILECQVLVPPWPRSIYWYNKEGVV-EASDKYHIMADGLGGYSIEINYLEAVDDGEWKCV 626
A L C P PR + N + + S + ++A+G + I+ + D G + C+
Sbjct: 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANG---SELHISNVRYEDTGAYTCI 57
Query: 627 ATSSSGVKQ 635
A + +GV +
Sbjct: 58 AKNEAGVDE 66
>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of
myotilin, palladin, and myopalladin.
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in
myotilin, palladin, and myopalladin. Myotilin,
palladin, and myopalladin function as scaffolds that
regulate actin organization. Myotilin and myopalladin
are most abundant in skeletal and cardiac muscle;
palladin is ubiquitously expressed in the organs of
developing vertebrates and plays a key role in cellular
morphogenesis. The three family members each interact
with specific molecular partners: all three bind to
alpha-actinin; in addition, palladin also binds to
vasodilator-stimulated phosphoprotein (VASP) and ezrin,
myotilin binds to filamin and actin, and myopalladin
also binds to nebulin and cardiac ankyrin repeat protein
(CARP).
Length = 75
Score = 44.4 bits (105), Expect = 9e-06
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFALT--ANPKDPSSLGTYT 509
V LEC+V IP PQ+ W K+N+ + G I L AN +D G YT
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDA---GWYT 57
Query: 510 CEAVNCMGAAFSTSRV 525
AVN G +R+
Sbjct: 58 VSAVNEAGVVSCNARL 73
Score = 33.6 bits (77), Expect = 0.064
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGT--CCL----------GIYTCE 911
V LEC+V +P P + W K+ E+ + +I +D CL G YT
Sbjct: 1 VRLECRVSAIPPPQIFWKKN-NEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVS 59
Query: 912 AHNCMGTTSSSAAL 925
A N G S +A L
Sbjct: 60 AVNEAGVVSCNARL 73
Score = 33.2 bits (76), Expect = 0.085
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELK 692
V EC+V P P + W K+NE L
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLT 25
Score = 31.7 bits (72), Expect = 0.24
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 2 GIPTPQLIWYKDNKKIK------------AGDIFALT--ANPKDPSSLGTYTCEAVNCMG 47
IP PQ+ W K+N+ + G I L AN +D G YT AVN G
Sbjct: 9 AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDA---GWYTVSAVNEAG 65
Query: 48 AAFSTSRV 55
+R+
Sbjct: 66 VVSCNARL 73
Score = 31.3 bits (71), Expect = 0.36
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 92 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
GR L I+ ++D G Y+V+A NE+G + L V
Sbjct: 39 GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75
Score = 31.3 bits (71), Expect = 0.36
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 199 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
GR L I+ ++D G Y+V+A NE+G + L V
Sbjct: 39 GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75
Score = 31.3 bits (71), Expect = 0.36
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
GR L I+ ++D G Y+V+A NE+G + L V
Sbjct: 39 GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75
Score = 31.3 bits (71), Expect = 0.38
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 570 LECQVLVPPWPRSIYW-YNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628
LEC+V P P+ I+W N E + +D+ + D G + I D G + A
Sbjct: 3 LECRVSAIPPPQ-IFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61
Query: 629 SSSGV 633
+ +GV
Sbjct: 62 NEAGV 66
Score = 30.9 bits (70), Expect = 0.50
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQV-VESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
+ +VS P P++ W ++++ + +D + + ++ G L I D + A
Sbjct: 2 RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61
Query: 826 NDFGQSITSCFLKLNV 841
N+ G + SC +L+V
Sbjct: 62 NEAG--VVSCNARLDV 75
>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of
peroxidasin. Ig3_Peroxidasin: the third immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 74
Score = 41.5 bits (97), Expect = 9e-05
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCE 911
EG V+ C+ G PQP + W K G +L H ++S GT + G Y C+
Sbjct: 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS--SGTLRISRVALHDQGQYECQ 58
Query: 912 AHNCMGTTSSSAAL 925
A N +G+ + A L
Sbjct: 59 AVNIVGSQRTVAQL 72
Score = 36.1 bits (83), Expect = 0.007
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
V F C+ G+P P + W K +L + + + +L G Y C A N++G
Sbjct: 5 VDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVG 64
Query: 718 KAESSTQLTI 727
+ QLT+
Sbjct: 65 SQRTVAQLTV 74
>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor_like-1(FGFRL1).
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain
of fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal
peptide, three extracellular Ig-like modules, a
transmembrane segment, and a short intracellular domain.
FGFRL1 is expressed preferentially in skeletal tissues.
Similar to FGF receptors, the expressed protein
interacts specifically with heparin and with FGF2.
FGFRL1 does not have a protein tyrosine kinase domain at
its C terminus; neither does its cytoplasmic domain
appear to interact with a signaling partner. It has been
suggested that FGFRL1 may not have any direct signaling
function, but instead acts as a decoy receptor trapping
FGFs and preventing them from binding other receptors.
Length = 82
Score = 41.7 bits (98), Expect = 1e-04
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDI-------FALTANPKDPSSLGTYTCEAVNC 515
+V L+C G P P + W KDNK + +I + L+ P G YTC N
Sbjct: 11 SVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNR 70
Query: 516 MGAAFSTSRV 525
G +T +V
Sbjct: 71 AGEINATYKV 80
Score = 34.4 bits (79), Expect = 0.034
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 2 GIPTPQLIWYKDNKKIKAGDI-------FALTANPKDPSSLGTYTCEAVNCMGAAFSTSR 54
G P P + W KDNK + +I + L+ P G YTC N G +T +
Sbjct: 20 GNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYK 79
Query: 55 V 55
V
Sbjct: 80 V 80
Score = 32.1 bits (73), Expect = 0.23
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 15/68 (22%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH-----------KIISGEDGTCCLGIYT 909
G +V L+C G P+P + W KD + L +I K + ED G YT
Sbjct: 9 GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDS----GKYT 64
Query: 910 CEAHNCMG 917
C N G
Sbjct: 65 CHVSNRAG 72
Score = 30.6 bits (69), Expect = 0.88
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEEL---KPGDVYQLTGTSSL--------GSYCCVAKNVM 716
V +C G P P + W KDN+ L + G+ + T SL G Y C N
Sbjct: 12 VRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRA 71
Query: 717 GK 718
G+
Sbjct: 72 GE 73
>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the
L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains, five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 71
Score = 40.7 bits (95), Expect = 2e-04
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQL----------TGTSSLGSYCCVAKNVMG 717
+ EC G PTP + W + + L P +L S G Y C A+N G
Sbjct: 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60
Query: 718 KAESSTQLTIE 728
A +T+E
Sbjct: 61 SARHHYTVTVE 71
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 40.0 bits (93), Expect = 3e-04
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
+P+P+++WF+D V + N +I + G L+I E +DQ +++C+ATN G
Sbjct: 10 NPDPEITWFKDFLPVDTTSNGRIKQLRSGA--LQIENSEESDQGKYECVATNSAG 62
Score = 36.2 bits (83), Expect = 0.006
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 468 CKVMGIPTPQLIWYKD--------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
C G P P++ W+KD N +IK AL + S G Y C A N G
Sbjct: 5 CAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTR 64
Query: 520 FS 521
+S
Sbjct: 65 YS 66
Score = 33.9 bits (77), Expect = 0.044
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 2 GIPTPQLIWYKD--------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 51
G P P++ W+KD N +IK AL + S G Y C A N G +S
Sbjct: 9 GNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYS 66
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like:
domain similar to the third immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1
belongs to the L1 subfamily of cell adhesion molecules
(CAMs) and is comprised of an extracellular region
having six Ig-like domains and five fibronectin type III
domains, a transmembrane region and an intracellular
domain. L1 is primarily expressed in the nervous system
and is involved in its development and function. L1 is
associated with an X-linked recessive disorder, X-linked
hydrocephalus, MASA syndrome, or spastic paraplegia type
1, that involves abnormalities of axonal growth. This
group also contains the chicken neuron-glia cell
adhesion molecule, Ng-CAM and human neurofascin.
Length = 71
Score = 39.3 bits (92), Expect = 4e-04
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 671 ECKVVGFPTPTLQWFKDNEELKPGDVY--------QLTGTSSL--GSYCCVAKNVMGKAE 720
EC G PTP + W K EL ++ S G Y C A N +G A
Sbjct: 4 ECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63
Query: 721 SSTQLTIE 728
+ +T+E
Sbjct: 64 HTISVTVE 71
Score = 35.4 bits (82), Expect = 0.011
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIH--------KI--ISGEDGTCCLGIYTCEAHNC 915
LEC G+P P + W K G EL A KI +S ED G Y C A N
Sbjct: 3 LECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDD----GEYRCTASNS 58
Query: 916 MGTTS 920
+G+
Sbjct: 59 LGSAR 63
Score = 33.9 bits (78), Expect = 0.043
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIF------ALTANPKDPSSLGTYTCEAVNCMGAA 519
LEC G+PTP++ W K ++ A L + G Y C A N +G+A
Sbjct: 3 LECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA 62
Query: 520 FSTSRVIAR 528
T V
Sbjct: 63 RHTISVTVE 71
Score = 32.0 bits (73), Expect = 0.17
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH 432
I W + +L + RT+ + + + +VS D G + C A N++G +
Sbjct: 15 ISWIKIGGELPAD---RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63
Score = 28.5 bits (64), Expect = 3.4
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF------ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
G+PTP++ W K ++ A L + G Y C A N +G+A T V
Sbjct: 9 GLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68
Query: 56 IAR 58
Sbjct: 69 TVE 71
>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_2: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 74
Score = 39.4 bits (92), Expect = 5e-04
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
G RA L + R E IHW D KL N +D I +++V D+G +TC+
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVK--DTGSFTCI 58
Query: 424 AENAVGRSHCSCELSV 439
A NA G + + EL +
Sbjct: 59 ASNAAGEATATVELHI 74
Score = 35.2 bits (81), Expect = 0.015
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD----VYQ-------LTGTSSLGSYCCVAKNVM 716
+ CK G P P + W + +L VY +T GS+ C+A N
Sbjct: 4 ATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAA 63
Query: 717 GKAESSTQLTI 727
G+A ++ +L I
Sbjct: 64 GEATATVELHI 74
Score = 32.1 bits (73), Expect = 0.18
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 861 GGAVNLECKVIGVPQPTLKW-FKDGRELKAGDIHKIISGEDGTCCL--------GIYTCE 911
G L CK G P+P + W DG+ + + + + ++GT + G +TC
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLI--SNSSRTLVYDNGTLDILITTVKDTGSFTCI 58
Query: 912 AHNCMGTTSSSAAL 925
A N G +++ L
Sbjct: 59 ASNAAGEATATVEL 72
Score = 30.1 bits (68), Expect = 0.94
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKI----------KAGDIFALTANPKDPSSLGTYTCEA 512
+L CK G P P + W + K+ G + L KD G++TC A
Sbjct: 3 RATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDT---GSFTCIA 59
Query: 513 VNCMGAAFSTSRV 525
N G A T+ V
Sbjct: 60 SNAAGEA--TATV 70
Score = 29.4 bits (66), Expect = 1.8
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 77 DHPIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
D + N R + +G ++ I V+ D G ++ ASN +G +TA EL +
Sbjct: 24 DGKLISNSSRTLVYDNGTLDILITTVK--DTGSFTCIASNAAGEATATVELHI 74
Score = 29.4 bits (66), Expect = 1.8
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 184 DHPIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
D + N R + +G ++ I V+ D G ++ ASN +G +TA EL +
Sbjct: 24 DGKLISNSSRTLVYDNGTLDILITTVK--DTGSFTCIASNAAGEATATVELHI 74
Score = 29.4 bits (66), Expect = 1.8
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 291 DHPIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
D + N R + +G ++ I V+ D G ++ ASN +G +TA EL +
Sbjct: 24 DGKLISNSSRTLVYDNGTLDILITTVK--DTGSFTCIASNAAGEATATVELHI 74
Score = 29.0 bits (65), Expect = 2.7
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEG-VVEASDKYHIMADGLGGYSIEINYLEAVDDGEW 623
G A L C+ P P +I+W + +G ++ S + + +G +++I D G +
Sbjct: 1 GQRATLRCKARGDPEP-AIHWISPDGKLISNSSRTLVYDNG----TLDILITTVKDTGSF 55
Query: 624 KCVATSSSGVKQFSAAYVHVLM 645
C+A++++G + A V + +
Sbjct: 56 TCIASNAAGE---ATATVELHI 74
>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin
and similar proteins. Ig_Titin_like: immunoglobulin
(Ig)-like domain found in titin-like proteins. Titin
(also called connectin) is a fibrous sarcomeric protein
specifically found in vertebrate striated muscle. Titin
is gigantic, depending on isoform composition it ranges
from 2970 to 3700 kDa, and is of a length that spans
half a sarcomere. Titin largely consists of multiple
repeats of Ig-like and fibronectin type 3 (FN-III)-like
domains. Titin connects the ends of myosin thick
filaments to Z disks and extends along the thick
filament to the H zone. It appears to function
similarly to an elastic band, keeping the myosin
filaments centered in the sarcomere during muscle
contraction or stretching. Within the sarcomere, titin
is also attached to or is associated with myosin binding
protein C (MyBP-C). MyBP-C appears to contribute to the
generation of passive tension by titin, and similar to
titin has repeated Ig-like and FN-III domains. Also
included in this group are worm twitchin and insect
projectin, thick filament proteins of invertebrate
muscle, which also have repeated Ig-like and FN-III
domains.
Length = 74
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 83 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
R + T L I+ R D G+Y++T N +G +A + V
Sbjct: 29 GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 190 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
R + T L I+ R D G+Y++T N +G +A + V
Sbjct: 29 GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
R + T L I+ R D G+Y++T N +G +A + V
Sbjct: 29 GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74
Score = 34.9 bits (81), Expect = 0.019
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 674 VVGFPTPTLQWFKDNEELKPGDVYQLTGT---SSL----------GSYCCVAKNVMGKAE 720
+ G PTPT+ W KD + LK Q+ T +SL G Y KN G+
Sbjct: 8 ISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS 67
Query: 721 SS 722
++
Sbjct: 68 AT 69
Score = 34.9 bits (81), Expect = 0.021
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL---------GIYTCEAHN 914
V LE + G P PT+ W KDG+ LK +I + T + G YT N
Sbjct: 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN 61
Query: 915 CMGTTSSS 922
G S++
Sbjct: 62 PAGEKSAT 69
Score = 32.6 bits (75), Expect = 0.13
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEA 512
+V LE + G PTP + W KD K +K + +SL G YT
Sbjct: 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASS-TSLVIKNAERSDSGKYTLTL 59
Query: 513 VNCMGAAFSTSRVI 526
N G +T V
Sbjct: 60 KNPAGEKSATINVK 73
Score = 32.2 bits (74), Expect = 0.15
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 767 KFTVQVSIS--PEPKVSWFRDDQQVVESDNVKI 797
++V IS P P V+W +D + + S V+I
Sbjct: 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQI 33
Score = 29.9 bits (68), Expect = 1.2
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G PTP + W KD K +K + +SL G YT N G +
Sbjct: 10 GRPTPTVTWSKDGKPLKLSGRVQIETTASS-TSLVIKNAERSDSGKYTLTLKNPAGEKSA 68
Query: 52 TSRVI 56
T V
Sbjct: 69 TINVK 73
>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II
(D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2.
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain
II (D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2. Perlecan
consists of five domains. Domain I has three putative
heparan sulfate attachment sites; domain II has four LDL
receptor-like repeats, and one Ig-like repeat; domain
III resembles the short arm of laminin chains; domain IV
has multiple Ig-like repeats (21 repeats in human
perlecan); and domain V resembles the globular G domain
of the laminin A chain and internal repeats of EGF.
Perlecan may participate in a variety of biological
functions including cell binding, LDL-metabolism,
basement membrane assembly and selective permeability,
calcium binding, and growth- and neurite-promoting
activities.
Length = 78
Score = 39.4 bits (92), Expect = 6e-04
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAV 513
TV C G+PTP + W + + G LT S G YTCEA+
Sbjct: 3 TVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAI 62
Query: 514 NCMGAAFSTSRVIAR 528
N G F I
Sbjct: 63 NTRGMVFGIPDGILT 77
Score = 35.2 bits (81), Expect = 0.016
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 19/72 (26%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDI----HKIISGEDGTCCL----------G 906
G V C GVP P + W L G + I+ E G L G
Sbjct: 1 GETVEFTCVATGVPTPIINW-----RLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQG 55
Query: 907 IYTCEAHNCMGT 918
YTCEA N G
Sbjct: 56 AYTCEAINTRGM 67
Score = 30.2 bits (68), Expect = 1.2
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 2 GIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
G+PTP + W + + G LT S G YTCEA+N G F
Sbjct: 12 GVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71
Query: 53 SRVIAR 58
I
Sbjct: 72 PDGILT 77
Score = 29.0 bits (65), Expect = 2.6
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 23/68 (33%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDV----------YQLTGT--------SSLGSYC 709
V F C G PTP + W L G V GT S G+Y
Sbjct: 4 VEFTCVATGVPTPIINW-----RLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYT 58
Query: 710 CVAKNVMG 717
C A N G
Sbjct: 59 CEAINTRG 66
>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig3_NCAM-1_like: domain similar to the third
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1,and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 95
Score = 39.5 bits (92), Expect = 6e-04
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD-------------VYQLTGTSSLGSYCCVAKN 714
V+ C GFP PT+ W KD E ++ G+ + + Y C+A+N
Sbjct: 21 VTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVD-KLDEAEYTCIAEN 79
Query: 715 VMGKAESSTQLTI 727
G+ E+ L +
Sbjct: 80 KAGEQEAEIHLKV 92
Score = 37.2 bits (86), Expect = 0.005
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 759 QATVNEEFKFTVQVSIS------PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
Q+ VN V+++ PEP ++W +D + + + E + I +
Sbjct: 8 QSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGS--EMTILDV 65
Query: 813 EVADQAEWKCIATNDFGQSITSCFLKL 839
+ D+AE+ CIA N G+ LK+
Sbjct: 66 DKLDEAEYTCIAENKAGEQEAEIHLKV 92
Score = 36.1 bits (83), Expect = 0.013
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 853 ELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL------- 905
E+ A + G +V L C G P+PT+ W KDG +++G+ K EDG+
Sbjct: 10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDGSEMTILDVDKL 68
Query: 906 --GIYTCEAHNCMGTTSSSAAL 925
YTC A N G + L
Sbjct: 69 DEAEYTCIAENKAGEQEAEIHL 90
Score = 31.1 bits (70), Expect = 0.62
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
N DG +E+ I V + D Y+ A N++G A+ L V ++
Sbjct: 54 NEDG-SEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFAK 95
Score = 31.1 bits (70), Expect = 0.62
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
N DG +E+ I V + D Y+ A N++G A+ L V ++
Sbjct: 54 NEDG-SEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFAK 95
Score = 31.1 bits (70), Expect = 0.62
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
N DG +E+ I V + D Y+ A N++G A+ L V ++
Sbjct: 54 NEDG-SEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFAK 95
Score = 30.7 bits (69), Expect = 0.86
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGD---IFA-----LTANPKDPSSLGTYTCEAVN 514
+V+L C G P P + W KD + I++G+ F +T D YTC A N
Sbjct: 20 SVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAEN 79
Query: 515 CMGAA 519
G
Sbjct: 80 KAGEQ 84
>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin.
Ig1_Contactin: First Ig domain of contactins. Contactins
are neural cell adhesion molecules and are comprised of
six Ig domains followed by four fibronectin type
III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal activity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 91
Score = 39.4 bits (92), Expect = 7e-04
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 663 TDDGLVSFECKVVGFPTPTLQWFKDNEELK--PGDVYQLTGTSSL----------GSYCC 710
+D+G VS C+ G P PT +W + E+ P Y L G + + G Y C
Sbjct: 17 SDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQC 76
Query: 711 VAKNVMGKAESS 722
+A N++G S
Sbjct: 77 LASNIVGTVLSR 88
Score = 38.6 bits (90), Expect = 0.001
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELK----------AGDIH 893
P F E+ + S+ G V+L C+ G P PT +W +G E+ G++
Sbjct: 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNL- 60
Query: 894 KIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+IS G Y C A N +GT S A
Sbjct: 61 -VISNPSKAKDAGRYQCLASNIVGTVLSREAT 91
Score = 32.4 bits (74), Expect = 0.20
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIK--AGDIFALTA------NPKDPSSLGTYTC 510
+++G VSL C+ G P P W + +I ++L NP G Y C
Sbjct: 17 SDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQC 76
Query: 511 EAVNCMGAAFST 522
A N +G S
Sbjct: 77 LASNIVGTVLSR 88
>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM) and similar
proteins. Ig6_L1-CAM_like: domain similar to the sixth
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
NrCAM [Ng(neuronglia)CAM-related cell adhesion
molecule], which is primarily expressed in the nervous
system, and human neurofascin.
Length = 77
Score = 38.9 bits (91), Expect = 8e-04
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED-GTCCL------------GIYTCEA 912
++C+ G P PT W ++G ++ D GT + G Y C A
Sbjct: 3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62
Query: 913 HNCMGTTSSSAALL 926
N +GT S+ L
Sbjct: 63 SNELGTAISNEIHL 76
Score = 32.0 bits (73), Expect = 0.20
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 17/72 (23%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL------------GSYCC 710
+ +C+ G P PT W ++ P + +GT + G Y C
Sbjct: 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQC 60
Query: 711 VAKNVMGKAESS 722
A N +G A S+
Sbjct: 61 YASNELGTAISN 72
>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain
of palladin. Ig_Palladin_C: C-terminal immunoglobulin
(Ig)-like domain of palladin. Palladin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to this family contain multiple Ig-like domains and
function as scaffolds, modulating actin cytoskeleton.
Palladin binds to alpha-actinin ezrin,
vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP,
mDia interacting protein), and Src. Palladin also binds
F-actin directly, via its Ig3 domain. Palladin is
expressed as several alternatively spliced isoforms,
having various combinations of Ig-like domains, in a
cell-type-specific manner. It has been suggested that
palladin's different Ig-like domains may be specialized
for distinct functions.
Length = 75
Score = 38.5 bits (89), Expect = 0.001
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEA 512
V LEC+V G+P PQ+ W K+N+ + L G YT A
Sbjct: 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60
Query: 513 VNCMGAAFSTSRV 525
N G T+R+
Sbjct: 61 KNEAGIVSCTARL 73
Score = 35.0 bits (80), Expect = 0.016
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED--GTCCL----------GIYTCE 911
V LEC+V GVP P + W K+ L + ++ +D G CL G YT
Sbjct: 1 VRLECRVSGVPHPQIFWKKENESLTH-NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVS 59
Query: 912 AHNCMGTTSSSAAL 925
A N G S +A L
Sbjct: 60 AKNEAGIVSCTARL 73
Score = 31.2 bits (70), Expect = 0.38
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEEL 691
V EC+V G P P + W K+NE L
Sbjct: 1 VRLECRVSGVPHPQIFWKKENESL 24
>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor. Ig2_FGFR:
second immunoglobulin (Ig)-like domain of fibroblast
growth factor (FGF) receptor. FGF receptors bind FGF
signaling polypeptides. FGFs participate in multiple
processes such as morphogenesis, development, and
angiogenesis. FGFs bind to four FGF receptor tyrosine
kinases (FGFR1, -2, -3, -4). Receptor diversity is
controlled by alternative splicing producing splice
variants with different ligand binding characteristics
and different expression patterns. FGFRs have an
extracellular region comprised of three IG-like domains,
a single transmembrane helix, and an intracellular
tyrosine kinase domain. Ligand binding and specificity
reside in the Ig-like domains 2 and 3, and the linker
region that connects these two. FGFR activation and
signaling depend on FGF-induced dimerization, a process
involving cell surface heparin or heparin sulfate
proteoglycans.
Length = 85
Score = 38.7 bits (90), Expect = 0.001
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
V F C G PTPT++W K+ +E K + + S G+Y CV +
Sbjct: 12 VKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 71
Query: 714 NVMGKAESSTQLTI 727
N G + L +
Sbjct: 72 NEYGSINHTYHLDV 85
Score = 37.5 bits (87), Expect = 0.003
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
Query: 852 EELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGEDGTCCL-- 905
++L AV V C G P PT++W K+G+E K H+I + + + +
Sbjct: 1 KKLHAV-PAANTVKFRCPAAGNPTPTMRWLKNGKEFKQE--HRIGGYKVRNQHWSLIMES 57
Query: 906 ------GIYTCEAHNCMGT 918
G YTC N G+
Sbjct: 58 VVPSDKGNYTCVVENEYGS 76
Score = 35.6 bits (82), Expect = 0.016
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGD----------IFALTANPKDPSSLGTYTCEA 512
TV C G PTP + W K+ K+ K ++L PS G YTC
Sbjct: 11 TVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 70
Query: 513 VNCMGA 518
N G+
Sbjct: 71 ENEYGS 76
Score = 34.8 bits (80), Expect = 0.027
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL-EENKI----YRTQHDGNFYFID 408
++LH AV + + W +N ++ +E++I R QH + +
Sbjct: 1 KKLH--AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLI 54
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ SV D G +TC+ EN G + + L V
Sbjct: 55 MESVVPSDKGNYTCVVENEYGSINHTYHLDV 85
>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain
of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin
(Ig)-like domain of myotilin. Mytolin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to the latter family contain multiple Ig-like domains
and function as scaffolds, modulating actin
cytoskeleton. Myotilin is most abundant in skeletal and
cardiac muscle, and is involved in maintaining sarcomere
integrity. It binds to alpha-actinin, filamin and actin.
Mutations in myotilin lead to muscle disorders.
Length = 75
Score = 38.4 bits (89), Expect = 0.001
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 17/76 (22%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFAL--TANPKDPSSLGTYT 509
V LEC++ IP P++ W ++N+ ++ +G + L N KD G YT
Sbjct: 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDA---GWYT 57
Query: 510 CEAVNCMGAAFSTSRV 525
AVN G A +R+
Sbjct: 58 VSAVNEAGVATCHARL 73
Score = 34.2 bits (78), Expect = 0.038
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQV-VESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
K Q+S P PK+ W R+++ V +D + + ++ G L I + D + A
Sbjct: 2 KLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAV 61
Query: 826 NDFGQSITSCFLKLNV 841
N+ G + +C +L+V
Sbjct: 62 NEAG--VATCHARLDV 75
Score = 32.2 bits (73), Expect = 0.15
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 92 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
GR L I+ V + D G Y+V+A NE+G +T L V
Sbjct: 39 GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75
Score = 32.2 bits (73), Expect = 0.15
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 199 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
GR L I+ V + D G Y+V+A NE+G +T L V
Sbjct: 39 GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75
Score = 32.2 bits (73), Expect = 0.15
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
GR L I+ V + D G Y+V+A NE+G +T L V
Sbjct: 39 GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75
Score = 32.2 bits (73), Expect = 0.16
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 570 LECQVLVPPWPRSIYW-YNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628
LECQ+ P P+ I+W N E V +D+ + D G ++ I + D G + A
Sbjct: 3 LECQISAIPPPK-IFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAV 61
Query: 629 SSSGV 633
+ +GV
Sbjct: 62 NEAGV 66
Score = 29.1 bits (65), Expect = 2.0
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 17/67 (25%)
Query: 3 IPTPQLIWYKDNKKIK------------AGDIFAL--TANPKDPSSLGTYTCEAVNCMGA 48
IP P++ W ++N+ ++ +G + L N KD G YT AVN G
Sbjct: 10 IPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDA---GWYTVSAVNEAGV 66
Query: 49 AFSTSRV 55
A +R+
Sbjct: 67 ATCHARL 73
>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1.
Ig1_Contactin-1: First Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 93
Score = 38.8 bits (90), Expect = 0.001
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK-------IISGEDGTCCLGIYTCE 911
S G V++ C+ P P KW K+ ++ + +I+ D G Y C
Sbjct: 17 STEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCI 76
Query: 912 AHNCMGTTSSSAALLGF 928
N G S A L F
Sbjct: 77 VSNIYGKVRSREATLSF 93
Score = 37.2 bits (86), Expect = 0.005
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELK-PGDVYQLTG----------TSSLGSYCCVAK 713
+G VS C+ P P +W K+N ++ D Y + G G Y C+
Sbjct: 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVS 78
Query: 714 NVMGKAESS 722
N+ GK S
Sbjct: 79 NIYGKVRSR 87
Score = 33.4 bits (76), Expect = 0.12
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 461 QGTVSLECKVMGIPTPQLIWYKDNKKIK-AGDIFALTA------NPKDPSSLGTYTCEAV 513
+G VS+ C+ P P W K+N I D +++ NP G Y C
Sbjct: 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVS 78
Query: 514 NCMGAAFST 522
N G S
Sbjct: 79 NIYGKVRSR 87
>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5.
Ig1_Contactin-5: First Ig domain of the neural cell
adhesion molecule contactin-5. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains, anchored to the membrane by
glycosylphosphatidylinositol. The different contactins
show different expression patterns in the central
nervous system. In rats, a lack of contactin-5 (NB-2)
results in an impairment of the neuronal activity in the
auditory system. Contactin-5 is expressed specifically
in the postnatal nervous system, peaking at about 3
weeks postnatal. Contactin-5 is highly expressed in the
adult human brain in the occipital lobe and in the
amygdala; lower levels of expression have been detected
in the corpus callosum, caudate nucleus, and spinal
cord.
Length = 94
Score = 37.6 bits (87), Expect = 0.003
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK--------I 895
P F++E + S+ V L C+ G P PT +W ++G E+ ++ I
Sbjct: 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61
Query: 896 ISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928
IS G Y C A N +G+ S ALL F
Sbjct: 62 ISNPSEVKDSGRYQCLATNSIGSILSREALLQF 94
Score = 34.5 bits (79), Expect = 0.043
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 448 PFFTKELEAIL----TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA--------L 495
P F +E + + +++ V L C+ G P P W ++ +I + +
Sbjct: 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61
Query: 496 TANPKDPSSLGTYTCEAVNCMGAAFS 521
+NP + G Y C A N +G+ S
Sbjct: 62 ISNPSEVKDSGRYQCLATNSIGSILS 87
Score = 31.4 bits (71), Expect = 0.54
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 383 WYRNDRKLEENKIYR-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
W RN +++ YR + DGN + S V DSGR+ CLA N++G
Sbjct: 38 WLRNGTEIDTESDYRYSLIDGNLIISNPSEVK--DSGRYQCLATNSIG 83
Score = 31.1 bits (70), Expect = 0.75
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 771 QVSISPEPKVSWFRDDQQV-VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
+ +P P W R+ ++ ESD L + + + EV D ++C+ATN G
Sbjct: 27 EARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIIS---NPSEVKDSGRYQCLATNSIG 83
Score = 29.5 bits (66), Expect = 2.5
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 663 TDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQ---LTGT---------SSLGSYCC 710
+D+ V C+ G P PT +W ++ E+ Y+ + G G Y C
Sbjct: 17 SDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQC 76
Query: 711 VAKNVMG 717
+A N +G
Sbjct: 77 LATNSIG 83
Score = 29.1 bits (65), Expect = 2.9
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 551 PIFIKEVENVKAKIGT---SAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
P+F++E ++ + IL C+ P P + N + SD + + DG
Sbjct: 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--- 58
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGV 633
I N E D G ++C+AT+S G
Sbjct: 59 NLIISNPSEVKDSGRYQCLATNSIGS 84
>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor 2 (FGFR2).
Ig3_FGFR-2-like; domain similar to the third
immunoglobulin (Ig)-like domain of human fibroblast
growth factor receptor 2 (FGFR2). Fibroblast growth
factors (FGFs) participate in morphogenesis,
development, angiogenesis, and wound healing. These
FGF-stimulated processes are mediated by four FGFR
tyrosine kinases (FGRF1-4). FGFRs are comprised of an
extracellular portion consisting of three Ig-like
domains, a transmembrane helix, and a cytoplasmic
portion having protein tyrosine kinase activity. The
highly conserved Ig-like domains 2 and 3, and the linker
region between D2 and D3 define a general binding site
for FGFs. FGFR2 is required for male sex determination.
Length = 90
Score = 37.2 bits (86), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
L +V+ D+G +TCLA N++G SH S L+VL
Sbjct: 59 LRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90
Score = 29.9 bits (67), Expect = 1.8
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 30/91 (32%)
Query: 861 GGAVNLECKVIGVPQPTLKWFK-----------DG----RELKAGDIH-----------K 894
G V CKV QP ++W K DG LK ++ +
Sbjct: 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60
Query: 895 IISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
++ ED G YTC A N +G + SA L
Sbjct: 61 NVTFEDA----GEYTCLAGNSIGISHHSAWL 87
>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain. This family contains
immunoglobulin-like domains.
Length = 74
Score = 37.0 bits (85), Expect = 0.004
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 447 APFFTKELEAILTEQGTVSLECKVMGIP-TPQLIWYKD-----NKKIKAGDIFALTANPK 500
P T +T G V+L C G P P + WY++ LT +
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSV 60
Query: 501 DPSSLGTYTCEAVN 514
GTYTC A N
Sbjct: 61 TSEDSGTYTCVASN 74
Score = 36.2 bits (83), Expect = 0.007
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGFP-TPTLQWFKDNEELKP-------GDVYQLTGT 702
KP S +T G V+ C G P PT+ W+++ G L+
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSV 60
Query: 703 SS--LGSYCCVAKN 714
+S G+Y CVA N
Sbjct: 61 TSEDSGTYTCVASN 74
Score = 35.8 bits (82), Expect = 0.009
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 847 KPKFLEELKAVLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKAGDIHKIISG----EDG 901
KP ++ GG V L C G P P T+ W+++G
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSV 60
Query: 902 TCC-LGIYTCEAHN 914
T G YTC A N
Sbjct: 61 TSEDSGTYTCVASN 74
Score = 34.7 bits (79), Expect = 0.023
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 361 VKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGR 419
V G L P I WYRN + + LSSV+ DSG
Sbjct: 12 VTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGS---SGSTLT-LSSVTSEDSGT 67
Query: 420 WTCLAEN 426
+TC+A N
Sbjct: 68 YTCVASN 74
Score = 31.2 bits (70), Expect = 0.43
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 757 SCQATVNEEFKFTVQVSI---SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE 813
S +V T+ S P P +SW+R+ S + TL + ++
Sbjct: 7 SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTL-----TLSSVT 61
Query: 814 VADQAEWKCIATN 826
D + C+A+N
Sbjct: 62 SEDSGTYTCVASN 74
Score = 30.4 bits (68), Expect = 0.69
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
G L C P P +I WY + S G ++ ++ + + D G +
Sbjct: 15 GGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGS-----SGSTLTLSSVTSEDSGTYT 69
Query: 625 CVATS 629
CVA++
Sbjct: 70 CVASN 74
Score = 29.7 bits (66), Expect = 1.6
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 164 EIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASN 222
+ C + P S+ G + + L + V +D G Y+ ASN
Sbjct: 19 TLTCSAEGGPPPPTISWYRNGSI----SGGSGGLGSSGSTLTLSSVTSEDSGTYTCVASN 74
Score = 29.7 bits (66), Expect = 1.6
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 271 EIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASN 329
+ C + P S+ G + + L + V +D G Y+ ASN
Sbjct: 19 TLTCSAEGGPPPPTISWYRNGSI----SGGSGGLGSSGSTLTLSSVTSEDSGTYTCVASN 74
Score = 29.7 bits (66), Expect = 1.6
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 83 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASN 115
+ + L + V +D G Y+ ASN
Sbjct: 42 SGGSGGLGSSGSTLTLSSVTSEDSGTYTCVASN 74
>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin.
Ig3_Contactin_like: Third Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 37.1 bits (86), Expect = 0.004
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 847 KPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK-DGR------ELKAGDIHKI--IS 897
F ++ A+ G V LEC +G P P +KW K DG +G + KI I
Sbjct: 4 IVVFPKDTYALK--GQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQ 61
Query: 898 GEDGTCCLGIYTCEAHNCMG 917
ED G Y CEA N G
Sbjct: 62 FEDE----GTYECEAENIKG 77
Score = 34.8 bits (80), Expect = 0.026
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 450 FTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK------DPS 503
F K+ A+ + V+LEC +G P PQ+ W K + + + +
Sbjct: 7 FPKDTYALKGQ--NVTLECFALGNPVPQIKWRKVDGSMPSSAE-ISMSGAVLKIPNIQFE 63
Query: 504 SLGTYTCEAVNCMGAAFSTSRVI 526
GTY CEA N G R+
Sbjct: 64 DEGTYECEAENIKGKDTHQGRIY 86
Score = 34.4 bits (79), Expect = 0.034
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT-------- 702
F + A+ V+ EC +G P P ++W K + + ++G
Sbjct: 4 IVVFPKDTYALK--GQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQ 61
Query: 703 -SSLGSYCCVAKNVMGKAESSTQLTIE 728
G+Y C A+N+ GK ++ ++
Sbjct: 62 FEDEGTYECEAENIKGKDTHQGRIYVQ 88
>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1.
Ig5_Contactin-1: fifth Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 36.5 bits (84), Expect = 0.005
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEA 912
GG V +ECK P+P W K G EL + +I +DG+ + G YTC A
Sbjct: 1 GGRVIIECKPKAAPKPKFSWSK-GTELLVNN-SRISIWDDGSLEILNITKLDEGSYTCFA 58
Query: 913 HNCMGTTSSSAAL 925
N G +S+ L
Sbjct: 59 ENNRGKANSTGVL 71
Score = 34.6 bits (79), Expect = 0.022
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNV 715
G V ECK P P W K E L + SL GSY C A+N
Sbjct: 2 GRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENN 61
Query: 716 MGKAESSTQLTI 727
GKA S+ L++
Sbjct: 62 RGKANSTGVLSV 73
Score = 31.9 bits (72), Expect = 0.20
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 462 GTVSLECKVMGIPTPQLIWYK------DNKKIKAGDIFALTANPKDPSSLGTYTCEAVNC 515
G V +ECK P P+ W K +N +I D +L G+YTC A N
Sbjct: 2 GRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENN 61
Query: 516 MGAAFSTS 523
G A ST
Sbjct: 62 RGKANSTG 69
Score = 31.5 bits (71), Expect = 0.26
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
G I+EC+ P P+ + E +V S + I DG S+EI + +D+G +
Sbjct: 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNS-RISIWDDG----SLEILNITKLDEGSYT 55
Query: 625 CVATSSSG 632
C A ++ G
Sbjct: 56 CFAENNRG 63
Score = 29.6 bits (66), Expect = 1.4
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 368 RLLVEIR--SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425
R+++E + + + K W + L N DG+ +++ +++ D G +TC AE
Sbjct: 3 RVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGS---LEILNITKLDEGSYTCFAE 59
Query: 426 NAVGRSHCSCELSV 439
N G+++ + LSV
Sbjct: 60 NNRGKANSTGVLSV 73
>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in
neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin
(Ig)-like domain in neuregulins (NRGs). NRGs are
signaling molecules, which participate in cell-cell
interactions in the nervous system, breast, heart, and
other organ systems, and are implicated in the pathology
of diseases including schizophrenia, multiple sclerosis,
and breast cancer. There are four members of the
neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1
protein, binds to and activates the tyrosine kinases
receptors ErbB3 and ErbB4, initiating signaling
cascades. The other NRGs proteins bind one or the other
or both of these ErbBs. NRG-1 has multiple functions;
for example, in the brain it regulates various processes
such as radial glia formation and neuronal migration,
dendritic development, and expression of
neurotransmitters receptors; in the peripheral nervous
system NRG-1 regulates processes such as target cell
differentiation, and Schwann cell survival. There are
many NRG-1 isoforms, which arise from the alternative
splicing of mRNA. Less is known of the functions of the
other NRGs. NRG-2 and -3 are expressed predominantly in
the nervous system. NRG-2 is expressed by motor neurons
and terminal Schwann cells, and is concentrated near
synaptic sites and may be a signal that regulates
synaptic differentiation. NRG-4 has been shown to direct
pancreatic islet cell development towards the delta-cell
lineage.
Length = 75
Score = 36.4 bits (84), Expect = 0.005
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 21/77 (27%)
Query: 866 LECKVIGV-PQPTLKWFKDGRELKAG---DIHKI-------------ISGEDGTCCLGIY 908
L+C+ P KWFKDG+EL KI D G Y
Sbjct: 3 LKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADS----GEY 58
Query: 909 TCEAHNCMGTTSSSAAL 925
TC N +G + +A +
Sbjct: 59 TCVVENILGNDTVTANV 75
Score = 33.3 bits (76), Expect = 0.071
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 772 VSISPEPKVSWFRDDQQVVESDNVKILK--ETLGVCHLKIHALEVADQAEWKCIATNDFG 829
S P + WF+D +++ + + +K L+I+ ++AD E+ C+ N G
Sbjct: 8 TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILG 67
Query: 830 QSITS 834
+
Sbjct: 68 NDTVT 72
Score = 30.6 bits (69), Expect = 0.66
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%)
Query: 372 EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR 430
E+ + + RN +K E +I + L DSG +TC+ EN +G
Sbjct: 24 ELNRKNKPRNIKIRNKKKNSELQINK--------------AKLADSGEYTCVVENILGN 68
Score = 30.2 bits (68), Expect = 0.88
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 465 SLECKVMGI-PTPQLIWYKDNKKIKAG---DIFALTANPKDPSSL----------GTYTC 510
L+C+ P+ + W+KD K++ + K+ S L G YTC
Sbjct: 2 VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKN-SELQINKAKLADSGEYTC 60
Query: 511 EAVNCMGAAFSTSRV 525
N +G T+ V
Sbjct: 61 VVENILGNDTVTANV 75
Score = 29.4 bits (66), Expect = 1.5
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 17/74 (22%)
Query: 669 SFECKVVG-FPTPTLQWFKDNEELKPGDVYQLT------GTSSL----------GSYCCV 711
+C+ +P+ +WFKD +EL + + S L G Y CV
Sbjct: 2 VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCV 61
Query: 712 AKNVMGKAESSTQL 725
+N++G + +
Sbjct: 62 VENILGNDTVTANV 75
Score = 29.4 bits (66), Expect = 1.6
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 4 PTPQLIWYKDNKKIKAG---DIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
P+ + W+KD K++ + K+ S L G YTC N +G
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKN-SELQINKAKLADSGEYTCVVENILGNDT 70
Query: 51 STSRV 55
T+ V
Sbjct: 71 VTANV 75
>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_1: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 75
Score = 36.5 bits (84), Expect = 0.006
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 18/74 (24%)
Query: 866 LECKVIGVPQPTLKWFKDG-------RE-----LKAGDIHKI--ISGEDGTCCLGIYTCE 911
LEC G P P + W KDG RE + D+ I + ED G+Y+C
Sbjct: 3 LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIED----TGVYSCT 58
Query: 912 AHNCMGTTSSSAAL 925
A N G+ S++A L
Sbjct: 59 AQNTAGSISANATL 72
Score = 34.1 bits (78), Expect = 0.037
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 466 LECKVMGIPTPQLIWYKDNK-----------KIKAGDIFALTANPKDPSSLGTYTCEAVN 514
LEC G PTPQ+ W KD + D + K G Y+C A N
Sbjct: 3 LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVK-IEDTGVYSCTAQN 61
Query: 515 CMG 517
G
Sbjct: 62 TAG 64
Score = 34.1 bits (78), Expect = 0.040
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 671 ECKVVGFPTPTLQWFKDNEELKPG------------DVYQLTG--TSSLGSYCCVAKNVM 716
EC G PTP + W KD P DV+ + G Y C A+N
Sbjct: 4 ECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTA 63
Query: 717 GKAESSTQLTI 727
G ++ LT+
Sbjct: 64 GSISANATLTV 74
>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor (FGFR). Ig3_FGFR:
third immunoglobulin (Ig)-like domain of fibroblast
growth factor receptor (FGFR). Fibroblast growth factors
(FGFs) participate in morphogenesis, development,
angiogenesis, and wound healing. These FGF-stimulated
processes are mediated by four FGFR tyrosine kinases
(FGRF1-4). FGFRs are comprised of an extracellular
portion consisting of three Ig-like domains, a
transmembrane helix, and a cytoplasmic portion having
protein tyrosine kinase activity. The highly conserved
Ig-like domains 2 and 3, and the linker region between
D2 and D3 define a general binding site for FGFs.
Length = 90
Score = 36.6 bits (85), Expect = 0.007
Identities = 22/86 (25%), Positives = 28/86 (32%), Gaps = 26/86 (30%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEE------------------------LKPGDVYQLTGTS 703
V F CKV P +QW K E +V L S
Sbjct: 4 VEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVS 63
Query: 704 SL--GSYCCVAKNVMGKAESSTQLTI 727
G Y C+A N +G + S LT+
Sbjct: 64 FDDAGEYTCLAGNSIGPSHHSAWLTV 89
Score = 33.9 bits (78), Expect = 0.053
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
L +VS D+G +TCLA N++G SH S L+VL
Sbjct: 59 LRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90
Score = 33.2 bits (76), Expect = 0.13
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 22/87 (25%)
Query: 861 GGAVNLECKVIGVPQPTLKWFK-----------DG----RELKAG-------DIHKIISG 898
G V CKV QP ++W K DG LK + +
Sbjct: 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLR 60
Query: 899 EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
G YTC A N +G + SA L
Sbjct: 61 NVSFDDAGEYTCLAGNSIGPSHHSAWL 87
Score = 29.3 bits (66), Expect = 2.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 98 IRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
+R V DD G Y+ A N G S L+V
Sbjct: 59 LRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89
Score = 29.3 bits (66), Expect = 2.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 205 IRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+R V DD G Y+ A N G S L+V
Sbjct: 59 LRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89
Score = 29.3 bits (66), Expect = 2.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+R V DD G Y+ A N G S L+V
Sbjct: 59 LRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89
>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain
of M-protein (also known as myomesin-2).
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like
domain of M-protein (also known as myomesin-2).
M-protein is a structural protein localized to the
M-band, a transverse structure in the center of the
sarcomere, and is a candidate for M-band bridges.
M-protein is modular consisting mainly of repetitive
IG-like and fibronectin type III (FnIII) domains, and
has a muscle-type specific expression pattern. M-protein
is present in fast fibers.
Length = 92
Score = 36.4 bits (84), Expect = 0.007
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 458 LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFAL 495
+ E T++L C V G P P++IW+K+++ I+ + +++
Sbjct: 13 IMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSV 50
Score = 36.0 bits (83), Expect = 0.010
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG 901
EG +NL C V G P P + WFK+ ++++ + H + E G
Sbjct: 15 EGKTLNLTCTVFGNPDPEVIWFKNDQDIELSE-HYSVKLEQG 55
Score = 34.9 bits (80), Expect = 0.033
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
T V +P+P+V WF++DQ + S++ + E L I + D ++ N
Sbjct: 21 LTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNK 80
Query: 828 FG 829
+G
Sbjct: 81 YG 82
Score = 33.3 bits (76), Expect = 0.097
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 653 RFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVY 697
+ + L V+T + ++ C V G P P + WFK++++++ + Y
Sbjct: 2 KVIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHY 48
Score = 30.3 bits (68), Expect = 1.4
Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 380 KIHWYRNDRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVG 429
++ W++ND+ +E ++ Y + + G + + + V+ DSG+++ +N G
Sbjct: 32 EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82
>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrkB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 81
Score = 35.4 bits (82), Expect = 0.015
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 870 VIGVPQPTLKWFKDGRELKAGD-----IHKIISGEDGT-CCL----------GIYTCEAH 913
V G P+PTL W+ +G L D IH ++ CL G YT A
Sbjct: 7 VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66
Query: 914 NCMGTTSSS 922
N G S S
Sbjct: 67 NEYGQDSKS 75
Score = 30.4 bits (69), Expect = 0.88
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 20/69 (28%)
Query: 674 VVGFPTPTLQWFKDNEELKPGDV------------YQLTGTSSL--------GSYCCVAK 713
V G P PTL W+ + L D + G G+Y VA
Sbjct: 7 VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66
Query: 714 NVMGKAESS 722
N G+ S
Sbjct: 67 NEYGQDSKS 75
>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like
domain of myomesin and M-protein. Ig_Myomesin_like_C:
domain similar to the C-temrinal immunoglobulin
(Ig)-like domain of myomesin and M-protein. Myomesin and
M-protein are both structural proteins localized to the
M-band, a transverse structure in the center of the
sarcomere, and are candidates for M-band bridges. Both
proteins are modular, consisting mainly of repetitive
Ig-like and fibronectin type III (FnIII) domains.
Myomesin is expressed in all types of vertebrate
striated muscle; M-protein has a muscle-type specific
expression pattern. Myomesin is present in both slow and
fast fibers; M-protein is present only in fast fibers.
It has been suggested that myomesin acts as a molecular
spring with alternative splicing as a means of modifying
its elasticity.
Length = 92
Score = 35.6 bits (82), Expect = 0.019
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 456 AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
+ E T++L C V G P P++ W K+++ + D + + + + T + V+
Sbjct: 11 VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKV---EQGKYASLTIKGVS 66
Score = 35.2 bits (81), Expect = 0.024
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 769 TVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
T V P+P+VSW ++DQ + SD+ + E L I + D ++ + N +
Sbjct: 22 TCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKY 81
Query: 829 G 829
G
Sbjct: 82 G 82
Score = 34.0 bits (78), Expect = 0.064
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 856 AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG 901
+ EG +NL C V G P P + W K+ + L D H + E G
Sbjct: 11 VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSD-HYNVKVEQG 55
Score = 33.6 bits (77), Expect = 0.083
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 653 RFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQL 699
R V L V+T + ++ C V G P P + W K+++ L D Y +
Sbjct: 2 RVVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNV 50
Score = 31.7 bits (72), Expect = 0.33
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 77 DHPI-FGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
D + + + G+ L I+ V +D G+Y + N+ G T +SV
Sbjct: 39 DQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92
Score = 31.7 bits (72), Expect = 0.33
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 184 DHPI-FGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
D + + + G+ L I+ V +D G+Y + N+ G T +SV
Sbjct: 39 DQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92
Score = 31.7 bits (72), Expect = 0.33
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 291 DHPI-FGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
D + + + G+ L I+ V +D G+Y + N+ G T +SV
Sbjct: 39 DQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92
Score = 31.3 bits (71), Expect = 0.46
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 380 KIHWYRNDRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVG 429
++ W +ND+ L + Y + + G + + + VS DSG++ + +N G
Sbjct: 32 EVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82
>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like:
fourth immunoglobulin (Ig)-like domain of the L1 cell
adhesion molecule (CAM). L1 is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 76
Score = 34.5 bits (79), Expect = 0.024
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 18/68 (26%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK-------------DPSSLGTYT 509
T L+C+V GIPTP + W I I +P+ PS Y
Sbjct: 3 TARLDCQVEGIPTPNITW-----SINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQ 57
Query: 510 CEAVNCMG 517
CEA N G
Sbjct: 58 CEARNRHG 65
Score = 29.5 bits (66), Expect = 1.6
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEA 912
G L+C+V G+P P + W +G ++ D G L +Y CEA
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 913 HNCMG 917
N G
Sbjct: 61 RNRHG 65
>gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of
nephrin. Ig8_hNephrin_like: domain similar to the
eighth immunoglobulin-like domain in human nephrin.
Nephrin is an integral component of the slit diaphragm,
and is a central component of the glomerular
ultrafilter. Nephrin plays a structural role, and has a
role in signaling. Nephrin is a transmembrane protein
having a short intracellular portion, and an
extracellular portion comprised of eight Ig-like
domains, and one fibronectin type III-like domain. The
extracellular portions of nephrin, from neighboring foot
processes of separate podocyte cells, may interact with
each other, and in association with other components of
the slit diaphragm, form a porous molecular sieve within
the slit pore. The intracellular portion of nephrin is
associated with linker proteins, which connect nephrin
to the actin cytoskeleton. The intracellular portion is
tyrosine phosphorylated, and mediates signaling from the
slit diaphragm into the podocytes.
Length = 109
Score = 35.7 bits (82), Expect = 0.025
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGD------------IHK---IISGEDGTCCLGIYT 909
NL C+ GVP+ +W K+G L G+ +H I ++T
Sbjct: 27 NLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFT 86
Query: 910 CEAHNCMGTTSSSAALL 926
C AHN +G S L+
Sbjct: 87 CTAHNSLGEDSLDIQLV 103
>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2.
Ig1_Contactin-2: First Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (TAG-1,
axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. It may
play a part in the neuronal processes of neurite
outgrowth, axon guidance and fasciculation, and neuronal
migration. The first four Ig domains form the
intermolecular binding fragment, which arranges as a
compact U-shaped module by contacts between IG domains 1
and 4, and domains 2 and 3. The different contactins
show different expression patterns in the central
nervous system. During development and in adulthood,
contactin-2 is transiently expressed in subsets of
central and peripheral neurons. Contactin-2 is also
expressed in retinal amacrine cells in the developing
chick retina, corresponding to the period of formation
and maturation of AC processes.
Length = 94
Score = 34.9 bits (80), Expect = 0.027
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELK----------AGD-- 891
P F E+ ++L S V L C+ P T +W +G E+K AG+
Sbjct: 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLV 61
Query: 892 IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928
I+ D G Y C A N GT S A L F
Sbjct: 62 INNPQKARDA----GSYQCLAINRCGTVVSREANLRF 94
>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrKB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 90
Score = 34.4 bits (79), Expect = 0.039
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 856 AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG------DIHKIIS-------GEDGT 902
V+ EGG + C G P P ++W G + I + E T
Sbjct: 10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQT 69
Query: 903 CCLGIYTCEAHNCMGTTSSSAAL 925
TC A N +G + S +
Sbjct: 70 T----VTCTAENPVGQANVSVQV 88
Score = 32.9 bits (75), Expect = 0.14
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPG---------DVYQLTGTSSLG----SYCCVAKN 714
+ C G P P ++W + D+Y L ++ + C A+N
Sbjct: 18 ATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAEN 77
Query: 715 VMGKAESSTQLTI 727
+G+A S Q+T+
Sbjct: 78 PVGQANVSVQVTV 90
Score = 30.2 bits (68), Expect = 1.3
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 456 AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG---------DIFALTANPKDPSSLG 506
++ E GT ++ C G P P++ W + DI+ L + +
Sbjct: 10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQT 69
Query: 507 TYTCEAVNCMGAAFSTSRV 525
T TC A N +G A + +V
Sbjct: 70 TVTCTAENPVGQANVSVQV 88
Score = 29.4 bits (66), Expect = 2.3
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD-----QAEWKC 822
SP PKV W V ET + I+ L++++ Q C
Sbjct: 20 IRCTAEGSPLPKVEWIIAGLIV--IQTRTDTLET----TVDIYNLQLSNITSETQTTVTC 73
Query: 823 IATNDFGQS 831
A N GQ+
Sbjct: 74 TAENPVGQA 82
>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain
of human titin C terminus and similar proteins.
Ig5_Titin_like: domain similar to the M5, fifth
immunoglobulin (Ig)-like domain from the human titin C
terminus. Titin (also called connectin) is a fibrous
sarcomeric protein specifically found in vertebrate
striated muscle. Titin is gigantic; depending on isoform
composition it ranges from 2970 to 3700 kDa, and is of a
length that spans half a sarcomere. Titin largely
consists of multiple repeats of Ig-like and fibronectin
type 3 (FN-III)-like domains. Titin connects the ends of
myosin thick filaments to Z disks and extends along the
thick filament to the H zone, and appears to function
similar to an elastic band, keeping the myosin filaments
centered in the sarcomere during muscle contraction or
stretching.
Length = 92
Score = 34.6 bits (79), Expect = 0.039
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT-------------SSLGSYCCVAKN 714
F C V G P PT+ W ++ + + +Q+T T S G+Y V +N
Sbjct: 21 ARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80
Query: 715 VMGKAESSTQLT 726
GK E+ LT
Sbjct: 81 SEGKQEAQFTLT 92
Score = 31.9 bits (72), Expect = 0.36
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE 899
+SEG + C V G P PT+ W ++G+ + + H+I S E
Sbjct: 15 VSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTE 56
Score = 30.4 bits (68), Expect = 0.98
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 764 EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI 823
E +F+ V P P V+W R+ Q +V S +I T +I ++++D+ + +
Sbjct: 19 ESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS-TEYKSTFEISKVQMSDEGNYTVV 77
Query: 824 ATNDFGQ 830
N G+
Sbjct: 78 VENSEGK 84
Score = 28.9 bits (64), Expect = 4.0
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
PA I K ++ G SA C V P P ++ W + ++ +S ++ I +
Sbjct: 3 PATILTKP-RSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIVSSQRHQITSTEYKS- 59
Query: 609 SIEINYLEAVDDGEWKCVATSSSG 632
+ EI+ ++ D+G + V +S G
Sbjct: 60 TFEISKVQMSDEGNYTVVVENSEG 83
>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain
of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule),
and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth
immunoglobulin (Ig)-like domain of L1, Ng-CAM
(Neuron-glia CAM cell adhesion molecule), and NrCAM
(Ng-CAM-related). These proteins belong to the L1
subfamily of cell adhesion molecules (CAMs) and are
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. These
molecules are primarily expressed in the nervous system.
L1 is associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of axonal
growth.
Length = 76
Score = 33.5 bits (77), Expect = 0.056
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 463 TVSLECKVMGIPTPQLIWY----------KDNKKIKAGDIFALTANPKDPSSLGTYTCEA 512
T L+C+ GIP P + W D ++ G L+ P+ Y C A
Sbjct: 3 TGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSN--VQPNDTAVYQCNA 60
Query: 513 VNCMGAAF 520
N G
Sbjct: 61 SNVHGYLL 68
Score = 32.4 bits (74), Expect = 0.14
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMG 917
L+C+ G+PQPT+ W +G ++ + GT L +Y C A N G
Sbjct: 6 LDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHG 65
Query: 918 T 918
Sbjct: 66 Y 66
>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain. Members of the
immunoglobulin superfamily are found in hundreds of
proteins of different functions. Examples include
antibodies, the giant muscle kinase titin and receptor
tyrosine kinases. Immunoglobulin-like domains may be
involved in protein-protein and protein-ligand
interactions. The Pfam alignments do not include the
first and last strand of the immunoglobulin-like domain.
Length = 62
Score = 33.3 bits (76), Expect = 0.057
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
G+ L + P ++ + W++ + LEE+ + ++ + + +S+V+ DSG +TC
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60
Score = 32.9 bits (75), Expect = 0.085
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGD----------IFALTANPKDPSSLGTYTCE 511
+V+L C V G P + W+K+ K ++ LT + P GTYTC
Sbjct: 2 SSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCV 61
Query: 512 A 512
Sbjct: 62 V 62
Score = 31.7 bits (72), Expect = 0.18
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL------------GIY 908
G +V L C V G PQ + WFK+G+ L+ + + + E+ + G Y
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLE--ESTTVGTDENRVSSITLTISNVTPEDSGTY 58
Query: 909 TCEA 912
TC
Sbjct: 59 TCVV 62
>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar
proteins. Ig5_NCAM-1 like: domain similar to the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1 and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 96
Score = 34.0 bits (78), Expect = 0.059
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK----ILKETLGV 804
PK L++ A E+ T + P P+++W R + E D +++ V
Sbjct: 3 PKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARV 61
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
L + +++ D + C A+N G S +L
Sbjct: 62 SSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94
Score = 30.6 bits (69), Expect = 1.0
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 18/95 (18%)
Query: 847 KPK--FLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR----ELKAGDIHKIISGED 900
+PK +LE AV E + L C+ G P P + W + R K+ D ++ G
Sbjct: 2 QPKITYLENQTAV--ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHA 59
Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAAL 925
L G Y CEA N +G S L
Sbjct: 60 RVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94
Score = 29.8 bits (67), Expect = 1.8
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD--------------IFALTANPKDPSSL 505
E ++L C+ G P P++ W + + GD + +LT +
Sbjct: 15 ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDA 74
Query: 506 GTYTCEAVNCMG 517
G Y CEA N +G
Sbjct: 75 GRYDCEASNRIG 86
Score = 29.4 bits (66), Expect = 2.4
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKY---HIMADGLGGYS- 609
I +EN A L C+ P P I W DK I+ G S
Sbjct: 5 ITYLENQTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSS 63
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFS 637
+ + ++ D G + C A++ G Q S
Sbjct: 64 LTLKDVQLTDAGRYDCEASNRIGGDQQS 91
>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1.
Ig3_Contactin-1: Third Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 33.8 bits (77), Expect = 0.066
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKA-GDIFALTANPK----DPSSLGTYTCEAVNCMGA 518
V+LEC +G P P + W K + + A +I A K P GTY CEA N G
Sbjct: 19 VTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK 78
Query: 519 AFSTSRV 525
+RV
Sbjct: 79 DKHQARV 85
Score = 33.1 bits (75), Expect = 0.10
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKA-------GDIHKI--ISGEDGTCCLGIYTCE 911
G V LEC +G P P ++W K + A G + KI I ED G Y CE
Sbjct: 16 GQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDE----GTYECE 71
Query: 912 AHNCMGTTSSSA 923
A N G A
Sbjct: 72 AENIKGKDKHQA 83
Score = 32.3 bits (73), Expect = 0.25
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT---------SSLGSYCCVAKNVMGK 718
V+ EC +G P P ++W K E + ++G G+Y C A+N+ GK
Sbjct: 19 VTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK 78
Query: 719 AESSTQLTIE 728
+ ++ ++
Sbjct: 79 DKHQARVYVQ 88
>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays
important roles in the development and regeneration of
the central nervous system, in synaptogenesis and neural
migration. NCAM mediates cell-cell and cell-substratum
recognition and adhesion via homophilic (NCAM-NCAM) and
heterophilic (NCAM-non-NCAM) interactions. NCAM is
expressed as three major isoforms having different
intracellular extensions. The extracellular portion of
NCAM has five N-terminal Ig-like domains and two
fibronectin type III domains. The double zipper adhesion
complex model for NCAM homophilic binding involves Ig1,
Ig2, and Ig3. By this model, Ig1 and Ig2 mediate
dimerization of NCAM molecules situated on the same cell
surface (cis interactions), and Ig3 domains mediate
interactions between NCAM molecules expressed on the
surface of opposing cells (trans interactions), through
binding to the Ig1 and Ig2 domains. The adhesive ability
of NCAM is modulated by the addition of polysialic acid
chains to the fifth Ig-like domain.
Length = 97
Score = 33.8 bits (77), Expect = 0.091
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVES-----DNVKILKETLGVCHLKIHALEVAD 816
+ E+ T + S P P ++W R + + S D +++ V L + ++ D
Sbjct: 16 LEEQITLTCEASGDPIPSITW-RTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTD 74
Query: 817 QAEWKCIATNDFGQSITSCFLKL 839
E+ C A+N GQ S +L++
Sbjct: 75 AGEYLCTASNTIGQDSQSMYLEV 97
>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found
in neuregulin (NRG)-1. Ig_Pro_neuregulin-1:
immunoglobulin (Ig)-like domain found in neuregulin
(NRG)-1. There are many NRG-1 isoforms which arise from
the alternative splicing of mRNA. NRG-1 belongs to the
neuregulin gene family, which is comprised of four
genes. This group represents NRG-1. NRGs are signaling
molecules, which participate in cell-cell interactions
in the nervous system, breast, and heart, and other
organ systems, and are implicated in the pathology of
diseases including schizophrenia, multiple sclerosis,
and breast cancer. The NRG-1 protein binds to and
activates the tyrosine kinases receptors ErbB3 and
ErbB4, initiating signaling cascades. NRG-1 has multiple
functions; for example, in the brain it regulates
various processes such as radial glia formation and
neuronal migration, dendritic development, and
expression of neurotransmitters receptors; in the
peripheral nervous system NRG-1 regulates processes such
as target cell differentiation, and Schwann cell
survival.
Length = 76
Score = 32.7 bits (74), Expect = 0.11
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 772 VSISPEPKVSWFRDDQQVVES---DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
VS P + WF++ +++ DN +++ L+I +AD E+KC+ ++
Sbjct: 8 VSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKL 67
Query: 829 GQSITS 834
G +
Sbjct: 68 GNDSVT 73
>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac
myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the
C5 immunoglobulin (Ig) domain of cardiac myosin binding
protein C (MyBP-C). MyBP_C consists of repeated domains,
Ig and fibronectin type 3, and various linkers. Three
isoforms of MYBP_C exist and are included in this group:
cardiac(c), and fast and slow skeletal muscle (s)
MyBP_C. cMYBP_C has insertions between and inside
domains and an additional cardiac-specific Ig domain at
the N-terminus. For cMYBP_C an interaction has been
demonstrated between this C5 domain and the Ig C8
domain.
Length = 86
Score = 32.1 bits (73), Expect = 0.21
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 767 KFTVQVSIS--PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA 824
K + V IS P P V+W R D+ E++ ++ + I E D+ +
Sbjct: 12 KLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITV 71
Query: 825 TNDFGQSITSCFLKL 839
TN G+ S F+K+
Sbjct: 72 TNPVGEDHASLFVKV 86
Score = 31.0 bits (70), Expect = 0.62
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 67 DDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 126
D F +G R R + + I R+D G Y++T +N G A +
Sbjct: 32 GDKAFTETEG-------RVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84
Query: 127 SV 128
V
Sbjct: 85 KV 86
Score = 29.4 bits (66), Expect = 2.3
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
R R + + I R+D G Y++T +N G A + V
Sbjct: 42 RVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86
Score = 29.4 bits (66), Expect = 2.3
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
R R + + I R+D G Y++T +N G A + V
Sbjct: 42 RVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86
>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of
semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like
domain in semaphorins. Semaphorins are transmembrane
protein that have important roles in a variety of
tissues. Functionally, semaphorins were initially
characterized for their importance in the development of
the nervous system and in axonal guidance. Later they
have been found to be important for the formation and
functioning of the cardiovascular, endocrine,
gastrointestinal, hepatic, immune, musculoskeletal,
renal, reproductive, and respiratory systems.
Semaphorins function through binding to their receptors
and transmembrane semaphorins also serves as receptors
themselves. Although molecular mechanism of semaphorins
is poorly understood, the Ig-like domains may involve in
ligand binding or dimerization.
Length = 89
Score = 32.4 bits (74), Expect = 0.22
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 851 LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH--KIISGEDGTCCL--- 905
EE + EG +V LEC ++ W G L+ + +++ EDG
Sbjct: 1 AEEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVS 59
Query: 906 ----GIYTCEAH 913
G+YTC++
Sbjct: 60 PADAGVYTCQSV 71
Score = 28.9 bits (65), Expect = 3.2
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 361 VKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI----YRTQHDGNFYFIDLSSVSLFD 416
V G L +S + W L+ + DG + + SVS D
Sbjct: 8 VVEGNSVFLECSPKSNLA-SVVWLFQGGPLQRKEEPEERLLVTEDG----LLIRSVSPAD 62
Query: 417 SGRWTCLA-ENAVGRSHCSCELSVLVP 442
+G +TC + E+ ++ + L+VL
Sbjct: 63 AGVYTCQSVEHGFKQTLATYSLNVLEV 89
>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM
(Ng (neuronglia) CAM-related cell adhesion molecule).
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of
NrCAM (Ng (neuronglia) CAM-related cell adhesion
molecule). NrCAM belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region,
and an intracellular domain. NrCAM is primarily
expressed in the nervous system.
Length = 77
Score = 31.8 bits (72), Expect = 0.28
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 19/73 (26%)
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHK----------------IISGEDGTCCLGIYT 909
++C+ G P P+ W ++G DI K I++GE G+Y
Sbjct: 3 IQCEAKGKPPPSFSWTRNGTHF---DIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQ 59
Query: 910 CEAHNCMGTTSSS 922
C A N G S+
Sbjct: 60 CTARNERGAAVSN 72
>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR).
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR). The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at
the Ig-like domains. VEGF-A is important to the growth
and maintenance of vascular endothelial cells and to the
development of new blood- and lymphatic-vessels in
physiological and pathological states. VEGFR-2 is a
major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A.
VEGFR-1 may play an inhibitory part in these processes
by binding VEGF and interfering with its interaction
with VEGFR-2. VEGFR-1 has a signaling role in mediating
monocyte chemotaxis. VEGFR-2 and -1 may mediate a
chemotactic and a survival signal in hematopoietic stem
cells or leukemia cells. VEGFR-3 has been shown to be
involved in tumor angiogenesis and growth.
Length = 71
Score = 31.6 bits (72), Expect = 0.30
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 15/56 (26%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYT 509
V L KV P P++ WYK+ K I + K SL G YT
Sbjct: 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK-----KSGHSLTIKDVTEEDAGNYT 51
Score = 28.5 bits (64), Expect = 2.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 864 VNLECKVIGVPQPTLKWFKDG 884
V L KV P P ++W+K+G
Sbjct: 1 VRLPVKVKAYPPPEIQWYKNG 21
>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_3: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 81
Score = 31.7 bits (72), Expect = 0.31
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 18/80 (22%)
Query: 666 GLVSFECKVVGFPTPTLQWFKDNEE-----LKPGDVY---------QL----TGTSSLGS 707
SF C V G P P + W K ++P V QL G
Sbjct: 2 ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGL 61
Query: 708 YCCVAKNVMGKAESSTQLTI 727
Y C A+N G ++ L++
Sbjct: 62 YTCTARNSGGLLRANFPLSV 81
Score = 31.7 bits (72), Expect = 0.33
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 462 GTVSLECKVMGIPTPQLIWYK--DNKK------------IKAGDIFALTANPKDPSSLGT 507
T S C V G P P++ W K K+ + +I L P G
Sbjct: 2 ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGL 61
Query: 508 YTCEAVNCMG 517
YTC A N G
Sbjct: 62 YTCTARNSGG 71
Score = 30.6 bits (69), Expect = 0.78
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 861 GGAVNLECKVIGVPQPTLKWFK--DGRE---LKAGDIH-KIISGEDGTCCL--------G 906
G + C V G P P + W K G+E ++ + ++ G + G
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60
Query: 907 IYTCEAHNCMG 917
+YTC A N G
Sbjct: 61 LYTCTARNSGG 71
>gnl|CDD|143305 cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like:
domain similar to the second immunoglobulin (Ig)-like
domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha
and IL-1 beta are cytokines which participate in the
regulation of inflammation, immune responses, and
hematopoiesis. These cytokines bind to the IL-1 receptor
type 1 (IL1R1), which is activated on additional
association with an accessory protein, IL1RAP. IL-1 also
binds the type II (IL1R2) represented in this group.
Mature IL1R2 consists of three IG-like domains, a
transmembrane domain, and a short cytoplasmic domain. It
lacks the large cytoplasmic domain of Mature IL1R1, and
does not initiate signal transduction. A naturally
occurring cytokine IL-1RA (IL-1 receptor antagonist) is
widely expressed and binds to IL-1 receptors, inhibiting
the binding of IL-1 alpha and IL-1 beta.
Length = 95
Score = 31.7 bits (72), Expect = 0.39
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 373 IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
+ T++++ WY++ L+++ G+ Y + VSL DSG +TC
Sbjct: 24 TINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLH-IIDVSLNDSGYYTC 72
>gnl|CDD|143226 cd05749, Ig2_Tyro3_like, Second immunoglobulin (Ig)-like domain of
Axl/Tyro3 receptor tyrosine kinases (RTKs).
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like
domain in the Axl/Tyro3 family of receptor tyrosine
kinases (RTKs). This family includes Axl (also known as
Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse,
Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk,
and Tyro12). Axl/Tyro3 family receptors have an
extracellular portion with two Ig-like domains followed
by two fibronectin-types III (FNIII) domains, a
membrane-spanning single helix, and a cytoplasmic
tyrosine kinase domain. Axl, Tyro3 and Mer are widely
expressed in adult tissues, though they show higher
expression in the brain, in the lymphatic and vascular
systems, and in the testis. Axl, Tyro3, and Mer bind the
vitamin K dependent protein Gas6 with high affinity, and
in doing so activate their tyrosine kinase activity.
Axl/Gas6 signaling may play a part in cell adhesion
processes, prevention of apoptosis, and cell
proliferation.
Length = 81
Score = 31.3 bits (71), Expect = 0.44
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 850 FLEELKAV-LSEGGAVNLECKVIGVPQP-TLKWFKDGREL-KAGDIHKIISGEDGTCCLG 906
F E + + ++ NL C+ +G P+P + W++ G L + G
Sbjct: 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGLNETS 60
Query: 907 IYTCEAHNCMGTTSSSAA 924
++CEAHN G T+S
Sbjct: 61 KFSCEAHNAKGVTTSRTG 78
Score = 30.5 bits (69), Expect = 0.69
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 672 CKVVGFPTP-TLQWFKDNEEL-----KPGDVYQLTGTSSLGSYCCVAKNVMGKAESST 723
C+ VG P P + W++ L V + G + + C A N G S T
Sbjct: 20 CQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGLNETSKFSCEAHNAKGVTTSRT 77
Score = 29.0 bits (65), Expect = 3.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY 586
F E E++ T L CQ + PP P I W+
Sbjct: 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWW 34
>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor (IL1R) and similar proteins.
Ig2_IL1R_like: domain similar to the second
immunoglobulin (Ig)-like domain of interleukin-1
receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines
which participate in the regulation of inflammation,
immune responses, and hematopoiesis. These cytokines
bind to the IL-1 receptor type 1 (IL1R1), which is
activated on additional association with an accessory
protein, IL1RAP. IL-1 also binds a second receptor
designated type II (IL1R2). Mature IL1R1 consists of
three IG-like domains, a transmembrane domain, and a
large cytoplasmic domain. Mature IL1R2 is organized
similarly except that it has a short cytoplasmic domain.
The latter does not initiate signal transduction. A
naturally occurring cytokine IL-1RA (IL-1 receptor
antagonist) is widely expressed and binds to IL-1
receptors, inhibiting the binding of IL-1 alpha and IL-1
beta. This group also contains ILIR-like 1 (IL1R1L)
which maps to the same chromosomal location as IL1R1 and
IL1R2.
Length = 92
Score = 31.5 bits (72), Expect = 0.45
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 377 TEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
T + WY++ + LE ++ + G+ I +V+ D+G +TC
Sbjct: 28 TLPPVQWYKDCKLLEGDRKRFVK--GSKLLIQ--NVTEEDAGNYTC 69
Score = 28.4 bits (64), Expect = 5.3
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 679 TPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAK-NVMGKA 719
P +QW+KD + L+ GD + S L G+Y C GK
Sbjct: 29 LPPVQWYKDCKLLE-GDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79
Score = 28.1 bits (63), Expect = 6.5
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 5 TPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAV-NCMGAAFSTS 53
P + WYKD K ++ GD K L G YTC+ G ++ +
Sbjct: 29 LPPVQWYKDCKLLE-GDRKRFVKGSK----LLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83
Query: 54 RVI 56
R I
Sbjct: 84 RTI 86
Score = 28.1 bits (63), Expect = 6.5
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 475 TPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAV-NCMGAAFSTS 523
P + WYKD K ++ GD K L G YTC+ G ++ +
Sbjct: 29 LPPVQWYKDCKLLE-GDRKRFVKGSK----LLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83
Query: 524 RVI 526
R I
Sbjct: 84 RTI 86
>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig4_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 90
Score = 31.5 bits (71), Expect = 0.49
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKD--------NEELKPGDVYQLTGTSSL----------GSYC 709
V+F+C+ G P P + W K+ + + + ++ T L G Y
Sbjct: 4 VTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYI 63
Query: 710 CVAKNVMGKAESSTQLTIEDI 730
C NV G + L + D+
Sbjct: 64 CQTLNVAGSILTKAYLEVTDV 84
Score = 31.1 bits (70), Expect = 0.72
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
+L I V+R D G Y N +G K L V + D P
Sbjct: 46 TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVIADRP 89
Score = 31.1 bits (70), Expect = 0.72
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
+L I V+R D G Y N +G K L V + D P
Sbjct: 46 TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVIADRP 89
Score = 31.1 bits (70), Expect = 0.72
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
+L I V+R D G Y N +G K L V + D P
Sbjct: 46 TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVIADRP 89
>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain. This domain is
found in antibodies as well as neural protein P0 and
CTL4 amongst others.
Length = 114
Score = 31.8 bits (72), Expect = 0.51
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 560 VKAKIGTSAILECQVLVPPWPRSIYWY------------------NKEGVVEA-SDKYHI 600
V G S L C S+YWY V + +
Sbjct: 11 VTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTL 70
Query: 601 MADGLG-GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+G +S+ I+ L D G + C ++ + + + + V
Sbjct: 71 SGNGSKNDFSLTISNLRLSDSGTYTCAVSNPNELVFGAGTRLTV 114
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 95
Score = 31.3 bits (71), Expect = 0.56
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 851 LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----- 905
E V GG V L C G P P ++W KDG L + +G+ +
Sbjct: 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVH 63
Query: 906 --------GIYTCEAHN-CMGTTSSSAALL 926
G Y C A N +G+ S A L
Sbjct: 64 SKHNKPDEGFYQCVAQNDSLGSIVSRTARL 93
Score = 30.1 bits (68), Expect = 1.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 449 FFTKELEAILT-EQGTVSLECKVMGIPTPQLIWYKD 483
+F E I+ G V L C G P P++ W KD
Sbjct: 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD 36
Score = 29.8 bits (67), Expect = 2.0
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVV--EASD-KYHIMADGLGGYS 609
F+ E ++ A G +L C P P I W K+GV+ SD + + +G S
Sbjct: 2 FLSEPSDIVAVRGGPVVLNCSAEGEP-PPKIEW-KKDGVLLNLVSDERRQQLPNG----S 55
Query: 610 IEINYLEAV-----DDGEWKCVATSSS 631
+ I + D+G ++CVA + S
Sbjct: 56 LLITSVVHSKHNKPDEGFYQCVAQNDS 82
>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 3 (VEGFR-3).
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 3 (VEGFR-3).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds
two members of the VEGF family (VEGF-C and -D) and is
involved in tumor angiogenesis and growth.
Length = 67
Score = 30.3 bits (68), Expect = 0.66
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 864 VNLECKVIGVPQPTLKWFKDGREL 887
V L KV P P +W+KDG+ +
Sbjct: 1 VKLPVKVAAYPPPEFQWYKDGKLI 24
Score = 30.3 bits (68), Expect = 0.82
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSLGSYCCVAKNVMGKAESS 722
V KV +P P QW+KD + + + +S G+Y V N E
Sbjct: 1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKR 60
Query: 723 TQLTI 727
L +
Sbjct: 61 ISLEL 65
Score = 29.1 bits (65), Expect = 1.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 464 VSLECKVMGIPTPQLIWYKDNKKI 487
V L KV P P+ WYKD K I
Sbjct: 1 VKLPVKVAAYPPPEFQWYKDGKLI 24
>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk
receptor TrkB. TrkB_d5: the fifth domain of Trk
receptor TrkB, this is an immunoglobulin (Ig)-like
domain which binds to neurotrophin. The Trk family of
receptors are tyrosine kinase receptors, which mediate
the trophic effects of the neurotrophin Nerve growth
factor (NGF) family. The Trks are activated by
dimerization, leading to autophosphorylation of
intracellular tyrosine residues, and triggering the
signal transduction pathway. TrkB shares significant
sequence homology and domain organization with TrkA, and
TrkC. The first three domains are leucine-rich domains.
The fourth and fifth domains are Ig-like domains playing
a part in ligand binding. TrKB is recognized by
brain-derived neurotrophic factor (BDNF) and
neurotrophin (NT)-4. In some cell systems NT-3 can
activate TrkA and TrkB receptors. TrKB transcripts are
found throughout multiple structures of the central and
peripheral nervous systems.
Length = 79
Score = 30.6 bits (69), Expect = 0.74
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 870 VIGVPQPTLKWFKDGRELKAGD-----IHKIISGEDGTCCL---------GIYTCEAHNC 915
V G P+PTL+WF +G L + IH I + E C GIYT A N
Sbjct: 7 VKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNE 66
Query: 916 MG 917
G
Sbjct: 67 YG 68
>gnl|CDD|218155 pfam04575, DUF560, Protein of unknown function (DUF560). Family of
hypothetical bacterial proteins.
Length = 301
Score = 33.0 bits (76), Expect = 0.77
Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 41/150 (27%)
Query: 280 NTIPFSFRAQGDHPIFGNRFRAINRD--GRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
+ + +S A+ + GN + + G+ + + + ++ SV AS GY AK
Sbjct: 57 HGLAYSLGAEKKWNLKGNHYLEFRLNTYGKYYWDNK--KYNE---LSVRASLGYGYKNAK 111
Query: 338 FELSVESQVPDAPAFIRRL---HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE--- 391
++SV P +R + G R Y K +
Sbjct: 112 QDVSVL------PFVEKRWYGGDRYSWANGVRLEGS-------------YWLSPKWQLST 152
Query: 392 ----ENKIYRTQH--DGNFYFIDLSSVSLF 415
+ + Y + DGN +F+ S++L
Sbjct: 153 ALEYKQERYFERKHLDGNIHFV---SLTLI 179
Score = 30.0 bits (68), Expect = 7.3
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 173 NTIPFSFRAQGDHPIFGNRFRAINRD--GRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
+ + +S A+ + GN + + G+ + + + ++ SV AS GY AK
Sbjct: 57 HGLAYSLGAEKKWNLKGNHYLEFRLNTYGKYYWDNK--KYNE---LSVRASLGYGYKNAK 111
Query: 231 FELSV 235
++SV
Sbjct: 112 QDVSV 116
>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of
platelet-derived growth factor receptor (PDGFR) alpha.
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like
domain of platelet-derived growth factor receptor
(PDGFR) alpha. PDGF is a potent mitogen for connective
tissue cells. PDGF-stimulated processes are mediated by
three different PDGFs (PDGF-A,-B, and C). PDGFR alpha
binds to all three PDGFs, whereas the PDGFR beta (not
included in this group) binds only to PDGF-B. PDGF alpha
is organized as an extracellular component having five
Ig-like domains, a transmembrane segment, and a
cytoplasmic portion having protein tyrosine kinase
activity. In mice, PDGFR alpha and PDGFR beta are
essential for normal development.
Length = 101
Score = 31.0 bits (70), Expect = 0.95
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-----DNVKILKETLGVCHLKIHALEV 814
A ++E +F V+V P P++ W +D++ ++E+ + ++ET V LK+ +
Sbjct: 15 ANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE 74
Query: 815 ADQAEWKCIATND 827
D + +A N+
Sbjct: 75 EDSGLYTALAQNE 87
Score = 28.7 bits (64), Expect = 4.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEEL 691
F +V +P P ++W KDN L
Sbjct: 21 KEFVVEVEAYPPPQIRWLKDNRTL 44
>gnl|CDD|143194 cd05717, Ig1_Necl-1-3_like, First (N-terminal) immunoglobulin
(Ig)-like domain of the nectin-like molecules Necl-1 -
Necl-3 (also known as cell adhesion molecules CADM3,
CADM1, and CADM2 respectively). Ig1_Necl-1-3_like:
N-terminal immunoglobulin (Ig)-like domain of the
nectin-like molecules Necl-1 (also known as cell
adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3
(CADM2). At least five nectin-like molecules have been
identified (Necl-1 - Necl-5). They all have an
extracellular region containing three Ig-like domains, a
transmembrane region, and a cytoplasmic region. The
N-terminal Ig-like domain of the extracellular region
belongs to the V-type subfamily of Ig domains, is
essential to cell-cell adhesion, and plays a part in the
interaction with the envelope glycoprotein D of various
viruses. Necl-1, Necl-2, and Necl-3 have
Ca(2+)-independent homophilic and heterophilic cell-cell
adhesion activity. Necl-1 is specifically expressed in
neural tissue, and is important to the formation of
synapses, axon bundles, and myelinated axons. Necl-2 is
expressed in a wide variety of tissues, and is a
putative tumour suppressor gene, which is downregulated
in aggressive neuroblastoma. Necl-3 accumulates in
central and peripheral nervous system tissue, and has
been shown to selectively interact with
oligodendrocytes. This group also contains Class-I
MHC-restricted T-cell-associated molecule (CRTAM), whose
expression pattern is consistent with its expression in
Class-I MHC-restricted T-cells.
Length = 95
Score = 30.5 bits (69), Expect = 1.2
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHW--------YRND-RKLEENKIYRTQHDGNFYFID 408
D+ V G A L +++ + W Y ND R L +N+I N I
Sbjct: 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSIS 65
Query: 409 LSSVSLFDSGRWTCL 423
+S+VSL D GR+TC
Sbjct: 66 ISNVSLSDEGRYTCS 80
>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain. These
domains belong to the immunoglobulin superfamily.
Length = 89
Score = 30.1 bits (68), Expect = 1.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 676 GFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
G P P + W+ D EL+ S
Sbjct: 26 GKPAPRITWYLDGRELEAITTSSEQDPES 54
>gnl|CDD|176566 cd08629, PI-PLCc_delta1, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-delta1. This
subfamily corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PLC-delta represents a
class of mammalian PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, and a C-terminal C2 domain.
This subfamily corresponds to the catalytic domain which
is a TIM barrel with two highly conserved regions (X and
Y) split by a highly degenerate linker sequence. There
are three PI-PLC-delta isozymes (1,3 and 4).
PI-PLC-delta1 is relatively well characterized. It is
activated by high calcium levels generated by other
PI-PLC family members, and therefore functions as a
calcium amplifier within the cell. Unlike PI-PLC-delta 4,
PI-PLC-delta1 and 3 possess a putative nuclear export
sequence (NES) located in the EF-hand domain, which may
be responsible transporting PI-PLC-delta1and 3 from the
cell nucleus. Experiments show PI-PLC-delta1 is essential
for normal hair formation.
Length = 258
Score = 31.9 bits (72), Expect = 1.5
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 931 KSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIY--DTPMASIEEREISFSFDGKEVSVSL 988
+ + E+ K +++K L + E IY +
Sbjct: 128 TTSLPSPEQLKGKILLKGKKLKLVPELSDMIIYCKSVHFGGFS--------SPGTSGQAF 179
Query: 989 YETPDLTEEEAIKVVEMYADELSEHISDK 1017
YE +E A+++++ + H
Sbjct: 180 YEMASFSESRALRLLQESGNGFVRHNVSC 208
>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like
domain of human neurofascin (NF).
Ig6_hNeurofascin_like: the sixth immunoglobulin
(Ig)-like domain of human neurofascin (NF). NF belongs
to the L1 subfamily of cell adhesion molecules (CAMs)
and is comprised of an extracellular region having six
Ig-like domains and five fibronectin type III domains, a
transmembrane region, and a cytoplasmic domain. NF has
many alternatively spliced isoforms having different
temporal expression patterns during development. NF
participates in axon subcellular targeting and synapse
formation, however little is known of the functions of
the different isoforms.
Length = 77
Score = 29.6 bits (66), Expect = 1.6
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCCL------------GIYTCEA 912
+EC+ G P PT +W ++G+ ++ + GT + G Y C A
Sbjct: 3 IECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFA 62
Query: 913 HNCMGTTSSSAALL 926
N +GT S+ LL
Sbjct: 63 RNNLGTALSNKILL 76
>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR) and similar proteins.
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR). In addition to SCFR
this group also includes the fourth Ig domain of
platelet-derived growth factor receptors (PDGFR), alpha
and beta, the fourth Ig domain of macrophage colony
stimulating factor (M-CSF), and the Ig domain of the
receptor tyrosine kinase KIT. SCFR and the PDGFR alpha
and beta have similar organization: an extracellular
component having five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. SCFR and its ligand SCF are
critical for normal hematopoiesis, mast cell
development, melanocytes and gametogenesis. SCF binds to
the second and third Ig-like domains of SCFR, this
fourth Ig-like domain participates in SCFR dimerization,
which follows ligand binding. Deletion of this fourth
SCFR_Ig-like domain abolishes the ligand-induced
dimerization of SCFR and completely inhibits signal
transduction. PDGF is a potent mitogen for connective
tissue cells. PDGF-stimulated processes are mediated by
three different PDGFs (PDGF-A,-B, and C). PDGFR alpha
binds to all three PDGFs, whereas the PDGFR beta, binds
only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta,
are essential for normal development.
Length = 101
Score = 29.6 bits (67), Expect = 2.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
+EL + R++ + G Y+ ASN + FEL V
Sbjct: 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVNV 101
Score = 29.6 bits (67), Expect = 2.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+EL + R++ + G Y+ ASN + FEL V
Sbjct: 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVNV 101
Score = 29.6 bits (67), Expect = 2.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+EL + R++ + G Y+ ASN + FEL V
Sbjct: 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVNV 101
>gnl|CDD|216195 pfam00923, Transaldolase, Transaldolase.
Length = 244
Score = 31.0 bits (71), Expect = 2.9
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 934 IEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGK---EVSVSLYE 990
KA E D +++ I+E G + EI DG+ EV L +
Sbjct: 30 FLKAIEYSALY---DEAIAEIKEIGGDDEEAYEELRPG-YEILKGIDGRVSLEVDPRLAD 85
Query: 991 TPDLTEEEAIKVVEMY 1006
+ T EA +++ +Y
Sbjct: 86 DTEGTIAEARRLIALY 101
>gnl|CDD|234548 TIGR04331, o_ant_LIC12162, putative transferase, LIC12162 family.
This protein family shows C-terminal sequence similarity
to various surface carbohydrate biosynthesis enzymes:
spore coat polysaccharide biosynthesis protein SpsB,
UDP-N-acetyl-D-glucosamine 2-epimerase, lipid A
disaccharide synthetase LpxB, etc. It may occur in
O-antigen biosythesis regions.
Length = 585
Score = 31.6 bits (72), Expect = 3.0
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 465 SLECKVMGIPTPQLIWYKDNKKIKAGDI-FALTANPKDPSSLGTY 508
S KV+ +P+ + K +K G+I F TA P+ L +
Sbjct: 369 SYRNKVIPLPSFKFKGKKIRRKDNNGEILFVGTAMPRYSYRLASG 413
>gnl|CDD|215719 pfam00104, Hormone_recep, Ligand-binding domain of nuclear hormone
receptor. This all helical domain is involved in binding
the hormone in these receptors.
Length = 186
Score = 30.4 bits (69), Expect = 3.1
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 975 ISFSFDGKEVSVSLYETPDLTEEEAIKVVE----MYADELSEHISDKNMIELPPLRFTK 1029
+ F+ GK +S E ++VVE + A+ L + D+N R K
Sbjct: 114 LLFNPAGKRLS-----------GEILEVVEKLQEVIANALHNYYKDENSPPNYSGRLAK 161
>gnl|CDD|153125 cd02434, Nodulin-21_like_3, Nodulin-21 and CCC1-related protein
family. Nodulin-21_like_3: This is a family of proteins
closely related to nodulin-21, a plant nodule-specific
protein that may be involved in symbiotic nitrogen
fixation. This family is also related to CCC1, a yeast
vacuole transmembrane protein that functions as an iron
and manganese transporter. .
Length = 225
Score = 30.8 bits (70), Expect = 3.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 970 IEEREISFSFDG-KEVSVSLYETPDLTEEEAIKVVE 1004
EE EI +G K V +Y L+EE A +VVE
Sbjct: 70 REEWEIENYPEGEKSEMVEIYSLKGLSEEVADQVVE 105
>gnl|CDD|143190 cd05713, Ig_MOG_like, Immunoglobulin (Ig)-like domain of myelin
oligodendrocyte glycoprotein (MOG). Ig_MOG_like:
immunoglobulin (Ig)-like domain of myelin
oligodendrocyte glycoprotein (MOG). MOG, a minor
component of the myelin sheath, is an important
CNS-specific autoantigen, linked to the pathogenesis of
multiple sclerosis (MS) and experimental autoimmune
encephalomyelitis (EAE). It is a transmembrane protein
having an extracellular Ig domain. MOG is expressed in
the CNS on the outermost lamellae of the myelin sheath,
and on the surface of oligodendrocytes, and may
participate in the completion, compaction, and/or
maintenance of myelin. This group also includes
butyrophilin (BTN). BTN is the most abundant protein in
bovine milk-fat globule membrane (MFGM).
Length = 100
Score = 29.1 bits (66), Expect = 3.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 91 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
+G L I VR D G Y+ ++ Y A EL V
Sbjct: 62 EGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99
Score = 29.1 bits (66), Expect = 3.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+G L I VR D G Y+ ++ Y A EL V
Sbjct: 62 EGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99
Score = 29.1 bits (66), Expect = 3.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+G L I VR D G Y+ ++ Y A EL V
Sbjct: 62 EGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99
>gnl|CDD|143238 cd05761, Ig2_Necl-1-4_like, Second immunoglobulin (Ig)-like domain
of the nectin-like molecules Necl-1 - Necl-4 (also known
as cell adhesion molecules CADM3, CADM1, CADM2, and
CADM4, respectively). Ig2_Necl-1-4_like: domain similar
to the second immunoglobulin (Ig)-like domain of the
nectin-like molecules Necl-1 (also known as cell
adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3
(CADM2) and Necl-4 (CADM4). These nectin-like molecules
have similar domain structures to those of nectins. At
least five nectin-like molecules have been identified
(Necl-1 - Necl-5). These have an extracellular region
containing three Ig-like domains, one transmembrane
region, and one cytoplasmic region. The N-terminal
Ig-like domain of the extracellular region belongs to
the V-type subfamily of Ig domains, is essential to
cell-cell adhesion, and plays a part in the interaction
with the envelope glycoprotein D of various viruses.
Necl-1 and Necl-2 have Ca(2+)-independent homophilic and
heterophilic cell-cell adhesion activity. Necl-1 is
specifically expressed in neural tissue and is important
to the formation of synapses, axon bundles, and
myelinated axons. Necl-2 is expressed in a wide variety
of tissues, and is a putative tumour suppressor gene,
which is downregulated in aggressive neuroblastoma.
Necl-3 has been shown to accumulate in tissues of the
central and peripheral nervous system, where it is
expressed in ependymal cells and myelinated axons. It
is observed at the interface between the axon shaft and
the myelin sheath. Necl-4 is expressed on Schwann cells,
and plays a key part in initiating peripheral nervous
system (PNS) myelination. Necl-4 participates in
cell-cell adhesion and is proposed to play a role in
tumor suppression.
Length = 82
Score = 28.5 bits (64), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 864 VNLECKVIGV-PQPTLKWFKDGRELKA 889
V L C G P T++WFK +ELK
Sbjct: 2 VELTCTSSGSKPAATIRWFKGDKELKG 28
>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA
polymerase delta, subunit B [DNA replication,
recombination, and repair].
Length = 481
Score = 30.4 bits (69), Expect = 6.0
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 538 DVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK 597
DVP SL G +++ A I + L + + I W N G + + K
Sbjct: 212 DVPGLSLNNTGDERVYV-------ALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVK 264
Query: 598 YHIMA----DGLGGYSIEINYLEAVD 619
Y I+A DG+G Y + L D
Sbjct: 265 YLIIAGDVVDGIGIYPGQEEELVIAD 290
>gnl|CDD|177613 PHA03376, PHA03376, BARF1; Provisional.
Length = 221
Score = 29.7 bits (66), Expect = 6.1
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 27/123 (21%)
Query: 378 EIKIHWYRNDRKLEENKIYRTQHD-----------------GNFYFIDLSSVSLFDSGRW 420
EI++ W++ E+ I R HD N +F+ +++ ++ G +
Sbjct: 43 EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNY 102
Query: 421 TC---LAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ 477
C L E V + LSV+ P + + +++ C V P P
Sbjct: 103 LCRMKLGETEVTKQEH---LSVVKPLTLS----VHSERSQFPDFSVLTVTCTVNAFPHPH 155
Query: 478 LIW 480
+ W
Sbjct: 156 VQW 158
>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-2 (also known as
OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-2 (also known as OCAM/mamFas II and
RNCAM). NCAM-2 is organized similarly to NCAM ,
including five N-terminal Ig-like domains and two
fibronectin type III domains. NCAM-2 is differentially
expressed in the developing and mature olfactory
epithelium (OE), and may function like NCAM, as an
adhesion molecule.
Length = 98
Score = 28.4 bits (63), Expect = 6.2
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 20/84 (23%)
Query: 860 EGGAVNLECKVIGVPQPTLKW--------FKDGRELKAGDIHKIISGEDGTCCLGI---- 907
E GA L CK G P P + W F +G + G I + G+ G L I
Sbjct: 15 ENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIE--VKGQHGESSLHIKDVK 72
Query: 908 ------YTCEAHNCMGTTSSSAAL 925
Y CEA + +G S L
Sbjct: 73 LSDSGRYDCEAASRIGGHQKSMYL 96
>gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box. The PAS domain was
previously described. This sensory box, or S-box domain
occupies the central portion of the PAS domain but is
more widely distributed. It is often tandemly repeated.
Known prosthetic groups bound in the S-box domain
include heme in the oxygen sensor FixL, FAD in the redox
potential sensor NifL, and a 4-hydroxycinnamyl
chromophore in photoactive yellow protein. Proteins
containing the domain often contain other regulatory
domains such as response regulator or sensor histidine
kinase domains. Other S-box proteins include
phytochromes and the aryl hydrocarbon receptor nuclear
translocator [Regulatory functions, Small molecule
interactions].
Length = 124
Score = 28.8 bits (65), Expect = 6.3
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 72 NRAQGDHPIFGNRFRAINRDGRT---ELNIRRVRRDDGGRYSV 111
R +G+ R +DG E+++ +R + G V
Sbjct: 66 RRLEGEREPVSEERRVRRKDGSEIWVEVSVSPIRTNGGELGVV 108
>gnl|CDD|217184 pfam02684, LpxB, Lipid-A-disaccharide synthetase. This is a family
of lipid-A-disaccharide synthetases, EC:2.4.2.128. These
enzymes catalyze the reaction:
UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine +
2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl
1-phosphate <=> UDP +
2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6
-beta-D-2,
3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl
1-phosphate. These enzymes catalyze the fist
disaccharide step in the synthesis of
lipid-A-disaccharide.
Length = 373
Score = 30.1 bits (68), Expect = 7.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 435 CELSVLVPK--AYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYK 482
C++S+L Y+A F +A L + GT +LE + G TP ++ Y+
Sbjct: 243 CDVSLLEISGERYEAMF---AADAALAKSGTATLEAALAG--TPMVVAYR 287
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 54,631,231
Number of extensions: 5422616
Number of successful extensions: 5671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5531
Number of HSP's successfully gapped: 357
Length of query: 1075
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 968
Effective length of database: 6,191,724
Effective search space: 5993588832
Effective search space used: 5993588832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.6 bits)