RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16863
(1075 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 386 bits (993), Expect = e-122
Identities = 143/614 (23%), Positives = 240/614 (39%), Gaps = 87/614 (14%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
+ P FI L + +G L ++ EI+I WY+ KL Y+ Q N +
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSL 466
++ V D G +TC AEN+VG S L + K P F ++L+ + G V+
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL--PPSFARKLKDVHETLGFPVAF 121
Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLGTYTCEAVNCMG 517
EC++ G Q+ WYKD + +K + D S +G Y C A N +G
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 518 AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP 577
A S++++ L P F + +V +G S +C V
Sbjct: 182 TASSSAKLT-----------------LSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGT 224
Query: 578 PWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFS 637
I W + Y + ++ + + D G++ C A++ +G S
Sbjct: 225 API-KITWAKDNREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282
Query: 638 AAYVHVLMPKNYRKPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGD 695
A + V PRF++ L+ D +ECK+ G P + W+KD E++
Sbjct: 283 -AQLGV-----QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS 336
Query: 696 VYQLT---GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLL 742
++++ + L G Y C A N G A SST L +++
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------------- 383
Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
P F + + + ++ +P +VSW +D +++ KI+ E
Sbjct: 384 -----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSEN- 437
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEG 861
+ + I ++ AD E++C A+ND G + L P P+F+++L + G
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-----PRFVKKLSDISTVVG 492
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCE 911
V L+ + G ++ WFKD E+ + IS + L G YTC+
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQ 552
Query: 912 AHNCMGTTSSSAAL 925
N GT A L
Sbjct: 553 IKNEAGTQECFATL 566
Score = 323 bits (830), Expect = 5e-99
Identities = 132/623 (21%), Positives = 241/623 (38%), Gaps = 83/623 (13%)
Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
+ P FI L + +G L +C+ D I ++ + ++
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITL----------QCKVDGTPEIRIAWYKEHTKLRSAPAYK 53
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 253
++ L I +V D G Y+ A N G + L ++ + P+F R+L D+
Sbjct: 54 MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER-KLPPSFARKLKDVH 112
Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT-ELNI 312
+G I ++ + + + + + L I
Sbjct: 113 ETLGFPVAFECRINGSEPLQVSWYKDG-----------ELLKDDANLQTSFIHNVATLQI 161
Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 372
+ + G+Y+ +ASN G +++ +L++ P F + + + +G
Sbjct: 162 LQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH-EVPPFFDLKPVSVDLALGESGTFKCH 220
Query: 373 IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH 432
+ IKI W +++R++ Y+ N + + V+ D+G++TC A N G+
Sbjct: 221 VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 280
Query: 433 CSCELSVLVPKAYKAPFFTKELE--AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG 490
CS +L V P P F K+LE I+ + ECK+ G P +++WYKD +I+
Sbjct: 281 CSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES 335
Query: 491 DIFALTANPKD---------PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF 541
F ++ G YTCEA N G+A S++ + +
Sbjct: 336 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK------------- 382
Query: 542 NSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM 601
P+F K+ V+ G LEC++ P + W+ + + + KY IM
Sbjct: 383 -------EPPVFRKKPHPVETLKGADVHLECELQGTPPF-QVSWHKDKRELRSGKKYKIM 434
Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
++ SI I +++ D GE++C A++ G + + P PRFV+ L +
Sbjct: 435 SEN-FLTSIHILNVDSADIGEYQCKASNDVGSDTCVG-SITLKAP-----PRFVKKLSDI 487
Query: 662 MTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTSSL----------G 706
T G V + + G ++ WFKD E+ + ++L G
Sbjct: 488 STVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547
Query: 707 SYCCVAKNVMGKAESSTQLTIED 729
Y C KN G E L++ +
Sbjct: 548 KYTCQIKNEAGTQECFATLSVLE 570
Score = 308 bits (791), Expect = 2e-93
Identities = 129/543 (23%), Positives = 236/543 (43%), Gaps = 88/543 (16%)
Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK-- 500
A + P+F + LE + G ++L+CKV G P ++ WYK++ K+++ + +
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 501 -------DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
D S +G YTC+A N +GA S++ + + P F
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVL-----------------VIKERKLPPSF 104
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
+++++V +G EC++ + WY +++ +++I
Sbjct: 105 ARKLKDVHETLGFPVAFECRINGSEPL-QVSWYKDGELLKDDANLQTSFIHNVA-TLQIL 162
Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFEC 672
+ G++ C A++ G S+A + + ++ P F +V G +F+C
Sbjct: 163 QTDQSHVGQYNCSASNPLGTAS-SSAKLTLS--EHEVPPFFDLKPVSVDLALGESGTFKC 219
Query: 673 KVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSYCCVAKNVMGKA 719
V G + W KDN E++PG Y++T T++L G Y C A NV GK
Sbjct: 220 HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 279
Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ-ATVNEEFKFTVQVSISPEP 778
S QL ++ + P+FI+ L+ + +E ++ ++ SPE
Sbjct: 280 SCSAQLGVQ------------------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI 321
Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
KV W++D+ ++ ES ++ V L+++ L V D ++ C A N G + +S LK
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380
Query: 839 LNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS 897
+ P P F ++ V +G V+LEC++ G P + W KD REL++G +KI+S
Sbjct: 381 VKEP-----PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS 435
Query: 898 GEDGTCCL----------GIYTCEAHNCMGTTSSSAALL-----GFEDKSQIEKAEEGKK 942
E+ + G Y C+A N +G+ + ++ F K G++
Sbjct: 436 -ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEE 494
Query: 943 ALI 945
+
Sbjct: 495 VQL 497
Score = 287 bits (736), Expect = 1e-85
Identities = 115/577 (19%), Positives = 232/577 (40%), Gaps = 70/577 (12%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
++ ++ L I +V D G Y+ A N G + L ++ + P+F R+
Sbjct: 49 APAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER-KLPPSFARK 107
Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
L D+ +G I ++ + + + + +
Sbjct: 108 LKDVHETLGFPVAFECRINGSEPLQVSWYKDG-----------ELLKDDANLQTSFIHNV 156
Query: 202 -ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
L I + + G+Y+ +ASN G +++ +L++ P F + + + +G
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH-EVPPFFDLKPVSVDLALGESG 215
Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
KC I ++ G ++ + L + +V + D
Sbjct: 216 TF----------KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 265
Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD-IAVKVGTRARLLVEIRSPTEI 379
G+Y+ ASN +G + +L V+ P FI++L VK R +I EI
Sbjct: 266 GQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI 321
Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
K+ WY+++ +++E+ +R + +++ ++S+ DSG +TC A NA G + S L V
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Query: 440 LVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
P P F K+ + T +G V LEC++ G P Q+ W+KD +++++G + + +
Sbjct: 382 KEP-----PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE 436
Query: 499 PKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG 548
+S+ G Y C+A N +G+ + +
Sbjct: 437 -NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA------------------- 476
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGG 607
P F+K++ ++ +G L+ + S+ W+ +K +V SD I
Sbjct: 477 -PPRFVKKLSDISTVVGEEVQLQATIEGAEPI-SVAWFKDKGEIVRESDNIWISYSENIA 534
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
+++ + E + G++ C + +G ++ A + VL
Sbjct: 535 -TLQFSRAEPANAGKYTCQIKNEAGTQE-CFATLSVL 569
Score = 284 bits (727), Expect = 2e-84
Identities = 114/572 (19%), Positives = 215/572 (37%), Gaps = 82/572 (14%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLGTYTCEAVNCMGAAFST 52
G P ++ WYK++ K+++ + + D S +G YTC+A N +GA S+
Sbjct: 31 GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASS 90
Query: 53 SRVIARGQQSFLD------------NDDVPFN-RAQG-----------DHPIFGNRFRAI 88
+ ++ + ++ V F R G + +
Sbjct: 91 AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT 150
Query: 89 NRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 147
+ L I + + G+Y+ +ASN G +++ +L++ P F + + +
Sbjct: 151 SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH-EVPPFFDLKPVSVDL 209
Query: 148 KVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
+G KC I ++ G ++ + L + +
Sbjct: 210 ALGESGTF----------KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLK 259
Query: 208 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD-IAVKVGTRARLLVEI 266
V + D G+Y+ ASN +G + +L V+ P FI++L VK R +I
Sbjct: 260 VTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHTRYECKI 315
Query: 267 RSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSV 325
EIK + + I ++FR + L + + +D G Y+
Sbjct: 316 GGSPEIKVLWYKDE-----------TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 364
Query: 326 TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR 385
A N +G +++ L V+ P F ++ H + G L E++ ++ W++
Sbjct: 365 EAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 420
Query: 386 NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY 445
+ R+L K Y+ + I + +V D G + C A N VG C +++ P
Sbjct: 421 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP--- 477
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
P F K+L I T G V L+ + G + W+KD +I + ++ ++
Sbjct: 478 --PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIAT 535
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVI 526
L G YTC+ N G + +
Sbjct: 536 LQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Score = 229 bits (586), Expect = 5e-65
Identities = 99/479 (20%), Positives = 181/479 (37%), Gaps = 76/479 (15%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLGTYTCEAVNCMGAAFST 52
G Q+ WYKD + +K + D S +G Y C A N +G A S+
Sbjct: 127 GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS 186
Query: 53 SRVIARGQ------------QSFLDNDDVPFN-RAQG-----------DHPIF-GNRFRA 87
+++ + F G + I G ++
Sbjct: 187 AKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM 246
Query: 88 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD-IA 146
+ L + +V + D G+Y+ ASN +G + +L V+ P FI++L
Sbjct: 247 TLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRI 302
Query: 147 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNI 205
VK R +I EIK + + I ++FR + L +
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDE-----------TEIQESSKFRMSFVESVAVLEM 351
Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 265
+ +D G Y+ A N +G +++ L V+ P F ++ H + G L E
Sbjct: 352 YNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKGADVHLECE 407
Query: 266 IR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGR 322
++ +P ++ D + G +++ ++ + T ++I V D G
Sbjct: 408 LQGTPPFQVSWHKD-------------KRELRSGKKYKIMSENFLTSIHILNVDSADIGE 454
Query: 323 YSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIH 382
Y ASN+ G T ++++ P F+++L DI+ VG +L I I +
Sbjct: 455 YQCKASNDVGSDTCVGSITLK----APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVA 510
Query: 383 WYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
W+++ ++ E+ + N + S ++G++TC +N G C LSVL
Sbjct: 511 WFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 373 bits (959), Expect = e-114
Identities = 164/888 (18%), Positives = 278/888 (31%), Gaps = 139/888 (15%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD-IAVKVGTRAR 154
+N+ R ++ A G T Q P F++ + I T A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKG--PVFLKEPTNRIDFSNSTGAE 58
Query: 155 LLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 213
+ +C+ N R+ G R I+ DG+ L R +D
Sbjct: 59 I----------ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK--LVFPPFRAEDY 106
Query: 214 ------GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR 267
Y+ A N+ G ++ V + A + ++ V G A + I
Sbjct: 107 RQEVHAQVYACLARNQFGSIISR---DVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIP 163
Query: 268 S-----PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGG 321
S + D + ++ + G EL+IR V D
Sbjct: 164 SFVADFVEVVSWHTD-------EEENYFPGAEYDGKYL-VLPSG--ELHIREVGPEDGYK 213
Query: 322 RYSVTASNESG-----YSTAKFELSVESQVPDAPAFI--RRLHDIAVKVGTRARLLVEIR 374
Y + +T + E P + + + LL +
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ 273
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL--SSVSLFDSGRWTCLAENAVGRSH 432
WY+ + L + DSG++ C+ N+VG
Sbjct: 274 GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333
Query: 433 CSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
L+V P + + G C+ G P + W KD K I +
Sbjct: 334 VETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 388
Query: 492 IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
L G Y C N +A +++ + L P
Sbjct: 389 -SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK-----------------LGGRFDPP 430
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHI----MADGLGG 607
+ + + + G S L+C P P I W + +D+Y + +G
Sbjct: 431 VIRQAFQEETMEPGPSVFLKCVAGGNPTP-EISWELDGKKIANNDRYQVGQYVTVNGDVV 489
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
+ I + A D G +KC+A S GV + +A ++V P + K +
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVGVAE-HSAKLNVYGL-----PYIRQMEKKAIVAGET 543
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-----------GSYCCVAKNVM 716
+ C V G+P ++ W +DN L ++ +L +Y CVAKN
Sbjct: 544 LIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQE 603
Query: 717 GKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE-GLKSCQATVNEEFKFTVQVSI 774
G + S ++ + P+ I + A V + V
Sbjct: 604 GYSARGSLEVQVMV------------------LPRIIPFAFEEGPAQVGQYLTLHCSVPG 645
Query: 775 SPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
P + W D Q + E + + L I A+E + + C A N G
Sbjct: 646 GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF 705
Query: 834 SCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI 892
+ L + VP P+++ E ++G +ECK G P+P + W K +
Sbjct: 706 TTPLNVYVP-----PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK 760
Query: 893 HKIISG----EDGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
S E+GT L G Y CEA N +G+ S+ ++
Sbjct: 761 DLKKSDNIRVEEGT--LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI 806
Score = 329 bits (845), Expect = 1e-98
Identities = 143/892 (16%), Positives = 267/892 (29%), Gaps = 173/892 (19%)
Query: 36 GTYTCEAVNCMGAAFSTSRVIARGQQ------------SFLDNDDVPFN-RAQGD-HPIF 81
+ A+ G+ + Q+ F ++ +A G+ P
Sbjct: 12 MLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEI 71
Query: 82 ------------GNRFRAINRDGRTELNIRRVRRDDG------GRYSVTASNESGYSTAK 123
R I+ DG+ L R +D Y+ A N+ G ++
Sbjct: 72 IWIRSDGTAVGDVPGLRQISSDGK--LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129
Query: 124 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-----PTEIKCQFDLNNTIPFS 178
V + A + ++ V G A + I S + D
Sbjct: 130 ---DVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-------E 179
Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESG-----YSTAKFE 232
+ ++ + G EL+IR V D Y + +T
Sbjct: 180 EENYFPGAEYDGKYL-VLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236
Query: 233 LSVESQVPDAPAFI--RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 290
+ E P + + + L C F +
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMAL----------LCPAQGYPVPVFRWYKFI 286
Query: 291 DHPIFGNRFRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
+ +R L I+ +D G+Y +N G + + L+V +
Sbjct: 287 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA---- 342
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
+ V G A + + W ++ + + + +
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRI-- 393
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLE 467
SV D G + C N + S EL + + P + + E G +V L+
Sbjct: 394 -ESVKKEDKGMYQCFVRNDRESAEASAELKLGG--RFDPPVIRQAFQEETMEPGPSVFLK 450
Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFAL----TANPKDPSSL----------GTYTCEAV 513
C G PTP++ W D KKI D + + T N S L G Y C A
Sbjct: 451 CVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 514 NCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQ 573
+ +G A ++++ G P +I+++E G + I+ C
Sbjct: 511 SKVGVAEHSAKLNVYG----------------LP-----YIRQMEKKAIVAGETLIVTCP 549
Query: 574 VLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDD-GEWKCVATSSSG 632
V P SI W + + K + +G ++ I +E D + CVA + G
Sbjct: 550 VAGYPID-SIVWERDNRALPINRKQKVFPNG----TLIIENVERNSDQATYTCVAKNQEG 604
Query: 633 VKQFSAAYVHVLMPKNYRKPRFVESLKAVMT--DDGLVSFECKVVGFPTP-TLQWFKDNE 689
+ V V++ PR + ++ C V G P + W D +
Sbjct: 605 YSARGSLEVQVMVL-----PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQ 659
Query: 690 ELKPGDVYQLT----GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLS 735
+ + S L G++ C A+N+ G + +T L +
Sbjct: 660 AISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV------ 713
Query: 736 EEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNV 795
P++I + K + P+P+V+W +
Sbjct: 714 ------------PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKD 761
Query: 796 KILKETLGV--CHLKIHALEVADQAEWKCIATNDFGQSITSC-FLKLNVPKH 844
+ + V L + ++ ++ + C A N G +++ + + H
Sbjct: 762 LKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHH 813
Score = 299 bits (768), Expect = 9e-88
Identities = 149/817 (18%), Positives = 253/817 (30%), Gaps = 165/817 (20%)
Query: 2 GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSL---GTYTCEAVNCMG 47
G P P++IW + + G + +D Y C A N G
Sbjct: 65 GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Query: 48 AAFSTS---RVIARGQ-------QSFLDNDDVPFN----RAQGDHPI--------FGNRF 85
+ S R + + + + D N F
Sbjct: 125 SIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 184
Query: 86 RAINRDGRT------ELNIRRVRR-DDGGRYSVTASNESG-----YSTAKFELSVESQVP 133
DG+ EL+IR V D Y + +T + E
Sbjct: 185 PGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244
Query: 134 DAPAFI--RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
P + + + L C F + +
Sbjct: 245 AVPKVVSLAKFDMKTYSGSSTMAL----------LCPAQGYPVPVFRWYKFIEGTTRKQA 294
Query: 192 FRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 249
+R L I+ +D G+Y +N G + + L+V + +
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----PLSAKIDP 350
Query: 250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-----FGNRFRAINR 304
V G A CQ G +PI + +AI
Sbjct: 351 PTQTVDFGRPAVF----------TCQ------------YTG-NPIKTVSWMKDG-KAIGH 386
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 364
L I V+++D G Y N+ + A EL + + P + + ++ G
Sbjct: 387 SESV-LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD-PPVIRQAFQEETMEPG 444
Query: 365 TRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-----TQHDGNFYFIDLSSVSLFDSGR 419
L +I W + +K+ N Y+ T + +++++SV D G
Sbjct: 445 PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504
Query: 420 WTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLI 479
+ C+A++ VG + S +L+V P+ + + + T+ + C V G P ++
Sbjct: 505 YKCIAKSKVGVAEHSAKLNVYGL-----PYIRQMEKKAIVAGETLIVTCPVAGYPIDSIV 559
Query: 480 WYKDNKKIKAGDIFALTA-------NPKDPSSLGTYTCEAVNCMGAAFSTS---RVIARG 529
W +DN+ + + N + S TYTC A N G + S +V+
Sbjct: 560 WERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV-- 617
Query: 530 QQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKE 589
I E A++G L C V P +I W +
Sbjct: 618 -------------------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT-LD 657
Query: 590 GV-VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN 648
G + G G + I +EA G + C A + +G +QF+ ++V +P
Sbjct: 658 GQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT-TPLNVYVP-- 714
Query: 649 YRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT----- 702
PR++ G ECK GFP P + W K + PG+ L +
Sbjct: 715 ---PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT-PGEYKDLKKSDNIRV 770
Query: 703 --SSL----------GSYCCVAKNVMGKAESSTQLTI 727
+L G Y C A N +G S+ +
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Score = 279 bits (716), Expect = 1e-80
Identities = 125/717 (17%), Positives = 227/717 (31%), Gaps = 144/717 (20%)
Query: 2 GIPTPQLIWYKDNKKIKA--------------GDIFALTANPKDPSSLGTYTCEAVNCMG 47
+ W+ D ++ G++ P+D +Y C + +
Sbjct: 167 ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPED--GYKSYQCRTKHRLT 224
Query: 48 AAFSTSRVIAR--------------------GQQSFLDNDDVPFN-RAQGD--------- 77
S R +++ + + AQG
Sbjct: 225 GETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYK 284
Query: 78 --HPIFGNRFRAIN---RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
+ +N + L I+ +D G+Y +N G + + L+V +
Sbjct: 285 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-- 342
Query: 133 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI----- 187
+ V G A CQ G +PI
Sbjct: 343 --PLSAKIDPPTQTVDFGRPAVF----------TCQ------------YTG-NPIKTVSW 377
Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
+ +AI L I V+++D G Y N+ + A EL + + P +
Sbjct: 378 MKDG-KAIGHSESV-LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD-PPVIRQ 434
Query: 248 RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD 305
+ ++ G L +PT EI + D I + R ++ +N D
Sbjct: 435 AFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDR------YQVGQYVTVNGD 487
Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGT 365
+ LNI V +DGG Y A ++ G + +L+V +IR++ A+ G
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-----LPYIRQMEKKAIVAGE 542
Query: 366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425
+ + I W R++R L N+ + +G ++ S D +TC+A+
Sbjct: 543 TLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNS--DQATYTCVAK 600
Query: 426 NAVGRS-HCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLI-WYK 482
N G S S E+ V+V E + G ++L C V G P I W
Sbjct: 601 NQEGYSARGSLEVQVMVL----PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL 656
Query: 483 DNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQS 532
D + I + + S L G +TC A N G T+ +
Sbjct: 657 DGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY---- 712
Query: 533 FLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVV 592
P +I E + G+ A +EC+ P P + W K
Sbjct: 713 ----------------VPPRWILEPTDKAFAQGSDAKVECKADGFPKP-QVTWK-KAVGD 754
Query: 593 EASDKYHIMADG---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
+ + + ++ ++ ++ ++G + C A + G + + V
Sbjct: 755 TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 308 bits (791), Expect = 2e-91
Identities = 123/820 (15%), Positives = 216/820 (26%), Gaps = 152/820 (18%)
Query: 105 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE 164
+ + + L + P + + +K T ++ + +
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDL-------PRLSIQKDILTIKANTTLQITCRGQRDLD 60
Query: 165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR--TELNIRRVRRDDGGRYSVTASN 222
DG L I +V +D G Y
Sbjct: 61 W-------------LWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRE 107
Query: 223 ESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI 282
S + V Q +P V T I C ++N
Sbjct: 108 TDLAS----VIYVYVQDYRSPFIASVSDQHGVVYIT-----ENKNKTVVIPCLGSISNLN 158
Query: 283 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+ + R I+ D + I G A + + V
Sbjct: 159 VSLCARYPEKRFVPDGNR-ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 217
Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKI----Y 396
+ H I + VG + L I +W K + K+
Sbjct: 218 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277
Query: 397 RTQHDGNFYFID----LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTK 452
+TQ + V+ D G +TC A + + S + V F +
Sbjct: 278 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP--FVAFGSG 335
Query: 453 ELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDI----FALTANPKDPSSLGT 507
+ G V + K +G P P++ WYK+ +++ LT G
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGN 395
Query: 508 YTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTS 567
YT N + + V VP P I V++ + GT+
Sbjct: 396 YTVILTNPISKEKQSHVVSLVVY--------VP-----PQIGEKSLISPVDSYQY--GTT 440
Query: 568 AILECQVLVPPWPRSIYWY--------------------------------NKEGVVEAS 595
L C V P P I+WY +E +
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500
Query: 596 DKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFV 655
+ +G + A +KC A + G + HV P
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVI-SFHVTRG-----PEIT 554
Query: 656 ESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--------------- 700
T+ VS C L W+K + P V +L
Sbjct: 555 LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA 614
Query: 701 --------GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLL 742
+ G Y C+A++ K +
Sbjct: 615 TMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT-------------- 660
Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
+ AP L++ ++ E + + S +P P++ WF+D++ +VE + +
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN- 719
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
+L I + D+ + C A + G + F +
Sbjct: 720 --RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 302 bits (775), Expect = 4e-89
Identities = 113/834 (13%), Positives = 217/834 (26%), Gaps = 177/834 (21%)
Query: 212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE 271
+ + + L + P + + +K T ++ + +
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDL-------PRLSIQKDILTIKANTTLQITCRGQRDLD 60
Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR--TELNIRRVRRDDGGRYSVTASN 329
DG L I +V +D G Y
Sbjct: 61 W-------------LWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRE 107
Query: 330 ESGYSTAKFELSVESQVPDAPAFIRRLH-DIAVKVGTRARL--LVEIRSPTEIKIHWYRN 386
S + A + I + L I + Y
Sbjct: 108 TDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPE 167
Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
R + + F + S + +G C A+ + V+V
Sbjct: 168 KRFVPDGNRISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 224
Query: 447 APFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL- 505
+ L+ + L C + + + K + + K S
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284
Query: 506 ------------------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPP 547
G YTC A + + +++ V +
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR-----------------VHEK 327
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
V+A +G + + L P P I WY K G+ +E++
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKYLGYPPP-EIKWY-KNGIPLESNHTIKA------ 379
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSG-VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
G+ + I + D G + + T+ KQ + V +P + + + +
Sbjct: 380 GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGT 439
Query: 666 GLVSFECKVVGFPTP-TLQWFKDNEELKPGDVYQLTGTSSL------------------- 705
+ C V P P + W+ EE + Q ++
Sbjct: 440 T-QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIE 498
Query: 706 ---------------------------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED 738
Y C A N +G+ E +
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV----------- 547
Query: 739 KLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV-------- 790
I Q T E S ++W++ Q +
Sbjct: 548 --------TRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELP 599
Query: 791 -----------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839
+ + T + +++ + DQ ++ C+A + + +L
Sbjct: 600 TPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL 659
Query: 840 NVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
V + P L+ S G ++ + C G P P + WFKD L +
Sbjct: 660 TVLERVA-PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--- 715
Query: 899 EDGTCCL----------GIYTCEAHNCMGTTSSSAALL--GFEDKSQIEKAEEG 940
+DG L G+YTC+A + +G A + G ++K+ +E+
Sbjct: 716 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHH 769
Score = 287 bits (736), Expect = 8e-84
Identities = 127/793 (16%), Positives = 210/793 (26%), Gaps = 137/793 (17%)
Query: 32 PSSLGTYTCEAVNCMGAAFSTSR------VIARGQQSFLDNDDVPFNRAQGDHPI----F 81
++ + C + I + + N + +G +
Sbjct: 6 LLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQI-TCRGQRDLDWLWP 64
Query: 82 GNRFRAINRDGRTE---------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
N+ + R TE L I +V +D G Y S + V Q
Sbjct: 65 NNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS----VIYVYVQD 120
Query: 133 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
+P V T I C ++N + +
Sbjct: 121 YRSPFIASVSDQHGVVYIT-----ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
R I+ D + I G A + + V + H I
Sbjct: 176 R-ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI 234
Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
+ VG + L R+ + F+ + + + + + + L I
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 294
Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 372
V R D G Y+ AS+ + V + P + VG R R+ +
Sbjct: 295 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVAFGSGMESLVEATVGERVRIPAK 353
Query: 373 IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH 432
+I WY+N LE N + + + VS D+G +T + N + +
Sbjct: 354 YLGYPPPEIKWYKNGIPLESN--HTIKAGHVLT---IMEVSERDTGNYTVILTNPISKEK 408
Query: 433 CSCELSVLV-PKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLI-WYKDNKKIKAG 490
S +S++V T +L C V IP P I WY ++ A
Sbjct: 409 QSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECAN 468
Query: 491 DIFALTANPKDPSSL------------------------------------------GTY 508
+ + Y
Sbjct: 469 EPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALY 528
Query: 509 TCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSA 568
CEAVN +G I +++ S
Sbjct: 529 KCEAVNKVGRGERVISFHVT---------------------RGPEITLQPDMQPTEQESV 567
Query: 569 ILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL-------------------GGYS 609
L C + ++ WY +
Sbjct: 568 SLWCTADRSTFE-NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
+E+ D G++ C+A K+ + VL P +L+ T G
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV---APTITGNLENQTTSIGES 683
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-GTSSL----------GSYCCVAKNVM 716
+ C G P P + WFKDNE L L G +L G Y C A +V+
Sbjct: 684 IEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 743
Query: 717 GKAESSTQLTIED 729
G A+ IE
Sbjct: 744 GCAKVEAFFIIEG 756
Score = 253 bits (648), Expect = 9e-72
Identities = 114/747 (15%), Positives = 184/747 (24%), Gaps = 146/747 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G +W + + ++ +L G Y C A+
Sbjct: 55 GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVI 114
Query: 52 TSRV--------------IARGQQSFLDNDDVPFN-RAQGDHP--IFGNRF--------- 85
V + N V + R+
Sbjct: 115 YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 145
I+ D + I G A + + V + H I
Sbjct: 175 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI 234
Query: 146 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 205
+ VG + L R+ + F+ + + + + + + L I
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 294
Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 265
V R D G Y+ AS+ + V + P + VG R R+ +
Sbjct: 295 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVAFGSGMESLVEATVGERVRIPAK 353
Query: 266 IRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRY 323
P EIK + + + + H L I V D G Y
Sbjct: 354 YLGYPPPEIKWYKN-GIPLESNHTIKAGH----------------VLTIMEVSERDTGNY 396
Query: 324 SVTASNESGYSTAKFELSVESQV-PDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKI 381
+V +N +S+ V P + + GT L + + P I
Sbjct: 397 TVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 456
Query: 382 HWYRNDRKLEENK---------------------------------IYRTQHDGNFYFID 408
HWY + N+ + N
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVST 516
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLEC 468
L + S + C A N VGR V P T + + TEQ +VSL C
Sbjct: 517 LVIQAANVSALYKCEAVNKVGRGERVISFHVTRG-----PEITLQPDMQPTEQESVSLWC 571
Query: 469 KVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------------------- 505
L WYK + + L
Sbjct: 572 TADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKN 631
Query: 506 ------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVEN 559
G Y C A + V + AP +EN
Sbjct: 632 ASLQDQGDYVCLAQDRKTKKRHC----------------VVRQLTVLERVAPTITGNLEN 675
Query: 560 VKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVD 619
IG S + C P P I W+ + + G ++ I + D
Sbjct: 676 QTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVEDSGIVLKD---GNRNLTIRRVRKED 731
Query: 620 DGEWKCVATSSSGVKQFSAAYVHVLMP 646
+G + C A S G + A+ +
Sbjct: 732 EGLYTCQACSVLGCAKVE-AFFIIEGA 757
Score = 232 bits (593), Expect = 2e-64
Identities = 82/596 (13%), Positives = 155/596 (26%), Gaps = 130/596 (21%)
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLE 467
+ S L W C+ A S L + P + + + + + T+ +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL--------PRLSIQKDILTIKANTTLQIT 52
Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMG 517
C+ G +W + + ++ +L G Y C
Sbjct: 53 CR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110
Query: 518 AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP 577
A+ ++ + PF + + ++I E + + ++ C +
Sbjct: 111 ASVIY---------VYVQDYRSPFIASVSDQHGVVYITENK------NKTVVIPCLGSIS 155
Query: 578 PWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFS 637
S+ E I D G I G C A + Q
Sbjct: 156 NLNVSLCARYPEKRFVPDGN-RISWDSKKG--FTIPSYMISYAGMVFCEAKINDESYQSI 212
Query: 638 AAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPG-- 694
V V+ + Y + + G + C + + + K
Sbjct: 213 MYIVVVVGYRIY--DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK 270
Query: 695 -----------DVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNH 733
S+L G Y C A + + ++ST + + +
Sbjct: 271 KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE---- 326
Query: 734 LSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD 793
+ATV E + + P P++ W+++ + +
Sbjct: 327 -----------KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH 375
Query: 794 NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV-PKHYKKPKFLE 852
+K L I + D + I TN + S + L V K L
Sbjct: 376 TIKA------GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429
Query: 853 ELKAVLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKAGDIHKIISGEDGTCCL------ 905
G L C V +P P + W+ E A + + +S + C
Sbjct: 430 SPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVE 489
Query: 906 ------------------------------------GIYTCEAHNCMGTTSSSAAL 925
+Y CEA N +G +
Sbjct: 490 DFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545
Score = 131 bits (331), Expect = 2e-31
Identities = 44/367 (11%), Positives = 89/367 (24%), Gaps = 68/367 (18%)
Query: 621 GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPT 679
W CV T ++ V S + PR + + C+ G
Sbjct: 10 ALWLCVETRAASVGLPSV---------SLDLPRLSIQKDILTIKANTTLQITCR--GQRD 58
Query: 680 PTLQWFKDNEELKPGDVYQLTG----TSSL----------GSYCCVAKNVMGKAESSTQL 725
W + + +L G+Y C + + +
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 726 TIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD 785
+ +++ +I N+ SIS R
Sbjct: 119 QD-------YRSPFIASVSDQHGVVYIT------ENKNKTVVIPCLGSISNLNVSLCARY 165
Query: 786 DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHY 845
++ D +I I + ++ C A + + ++ + V
Sbjct: 166 PEKRFVPDGNRI--SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI 223
Query: 846 KKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS-------- 897
LS G + L C + + + K +
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283
Query: 898 -GEDGTCCL----------GIYTCEAHNCMGTTSSSAAL--------LGFEDKSQIEKAE 938
+ L G+YTC A + + T +S + + +A
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343
Query: 939 EGKKALI 945
G++ I
Sbjct: 344 VGERVRI 350
Score = 123 bits (310), Expect = 6e-29
Identities = 52/434 (11%), Positives = 92/434 (21%), Gaps = 97/434 (22%)
Query: 2 GIPTPQLIWYKDNKKIKAGDI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV-- 55
G P P++ WYK+ +++ LT G YT N + + V
Sbjct: 356 GYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSL 415
Query: 56 -------------------IARGQQSFLD----------------NDDVPFNRAQGDHPI 80
G L +
Sbjct: 416 VVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS 475
Query: 81 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST------------------- 121
N + + + ++++ ST
Sbjct: 476 VTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNK 535
Query: 122 -----AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNT 174
V I D+ L +
Sbjct: 536 VGRGERVISFHVT-----RGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQP 590
Query: 175 IPFSFRAQ-------GDHPIFGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGY 226
+P D N N + ++ D G Y A +
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK 650
Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPF 284
+ AP L + +G + P +I D
Sbjct: 651 KRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD------- 703
Query: 285 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+ + + + R L IRRVR++D G Y+ A + G + + +E
Sbjct: 704 ------NETLVEDSGIVLKDGNRN-LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Query: 345 QVPDAPAFIRRLHD 358
+ R H
Sbjct: 757 -AQEKTNLERTHHH 769
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 289 bits (740), Expect = 2e-85
Identities = 106/710 (14%), Positives = 198/710 (27%), Gaps = 90/710 (12%)
Query: 232 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-----KCQFDLNNTIPFSF 286
+L++ES + V G LLV K + N +
Sbjct: 1 KLTIESTPFN------------VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGY 48
Query: 287 RAQGDHPIFGNRF---RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
G + I + L I+ + ++D G Y++ +
Sbjct: 49 VIGTQQATPGPAYSGREIIYPNA--SLLIQNIIQNDTGFYTLHVIKSDL-VNEEATGQFR 105
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN 403
I + V+ E + + W+ N++ L + + +
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQ-DATYLWWVNNQSLPVSPRLQLSNGNR 164
Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG- 462
+ +V+ D+ + C +N V S + + V Y T G
Sbjct: 165 TLTL--FNVTRNDTASYKCETQNPVSARR-SDSVILNV--LYGPDAPTISPLNTSYRSGE 219
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIK-AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
++L C P Q W+ + + ++F + G+YTC+A N
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNN---SGSYTCQAHNSDTGLNR 276
Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
T + P FI + + + L C+ +
Sbjct: 277 T----------------TVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT- 319
Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
W+ + S + + D ++ + + D G ++C + V +
Sbjct: 320 -YLWWVNNQSLPVSPRLQLSNDN---RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVIL 375
Query: 642 HVLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT 700
+VL Y S G+ +S C P W D + ++
Sbjct: 376 NVL----YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFIS 431
Query: 701 GTSSL--GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC 758
+ G Y C A N +T TI I S
Sbjct: 432 NITEKNSGLYTCQANNSASGHSRTTVKTITVSAE--------------LPKPSISSNNSK 477
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
+ FT + W+ + Q + S +++ L + + D
Sbjct: 478 PVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGN---RTLTLFNVTRNDAR 533
Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPT 877
+ C N + S + L+V Y + G +NL C P P
Sbjct: 534 AYVCGIQNSVS-ANRSDPVTLDV--LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQ 590
Query: 878 LKWFKDGRELKAGDIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
W +G + + I I+ + G Y C N ++S
Sbjct: 591 YSWRINGIPQQHTQVLFIAKITPNNN----GTYACFVSNLATGRNNSIVK 636
Score = 263 bits (673), Expect = 3e-76
Identities = 108/750 (14%), Positives = 202/750 (26%), Gaps = 141/750 (18%)
Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-----KCQFDLNNTIPFSF 179
+L++ES + V G LLV K + N +
Sbjct: 1 KLTIESTPFN------------VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGY 48
Query: 180 RAQGDHPIFGNRF---RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
G + I + L I+ + ++D G Y++ +
Sbjct: 49 VIGTQQATPGPAYSGREIIYPNA--SLLIQNIIQNDTGFYTLHVIKSDL-VNEEATGQFR 105
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLNNTIPFSFRAQGDHPIF 295
I + V+ E + N ++P S R Q
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVN-NQSLPVSPRLQ------ 158
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 355
++ RT L + V R+D Y N + SV V P
Sbjct: 159 ------LSNGNRT-LTLFNVTRNDTASYKCETQNPVSARRSD---SVILNVLYGPDAPTI 208
Query: 356 -LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL 414
+ + + G L S + W+ N + + ++++
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST--------QELFI---PNITV 257
Query: 415 FDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP 474
+SG +TC A N+ + + ++ V PF T + ++ V+L C+
Sbjct: 258 NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN 317
Query: 475 TPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSR 524
T +W+ +N+ + L D +L G Y C N + S
Sbjct: 318 TTY-LWWVNNQSLPVSPRLQL---SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPV 373
Query: 525 VIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL-VPPWPRSI 583
++ N L P + G + L C PP
Sbjct: 374 IL---------------NVLYGP---DDPTISPSYTYYRPGVNLSLSCHAASNPP-A-QY 413
Query: 584 YWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
W +G ++ + + I+ + + G + C A +S+ + +
Sbjct: 414 SWL-IDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTT-VKTI 460
Query: 644 LMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTS 703
+ KP + + D V+F C+ T L W + G
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR 520
Query: 704 SL----------GSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNNKAPKFI 752
+L +Y C +N + S L + I
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLY-----------------GPDTPI 563
Query: 753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
+ + +P P+ SW + + L I +
Sbjct: 564 ISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ------------VLFIAKI 611
Query: 813 EVADQAEWKCIATNDFGQSITSCFLKLNVP 842
+ + C +N S + V
Sbjct: 612 TPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 230 bits (588), Expect = 1e-64
Identities = 89/636 (13%), Positives = 163/636 (25%), Gaps = 131/636 (20%)
Query: 339 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--- 395
+L++ES + V G LLV WY+ +R +I
Sbjct: 1 KLTIESTPFN------------VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGY 48
Query: 396 ----------------YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ + ++ D+G +T + +
Sbjct: 49 VIGTQQATPGPAYSGREIIYPNASLLI---QNIIQNDTGFYTLHVIKSDLVNE-EATGQF 104
Query: 440 LVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN- 498
V P + + ++ V+ C+ +W+ +N+ + L+
Sbjct: 105 RVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN 163
Query: 499 ------PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
+ +Y CE N + A S S L
Sbjct: 164 RTLTLFNVTRNDTASYKCETQNPVSARRSDSV------------------ILNVLYGPDA 205
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIE 611
N + G + L C P W+ G + S + +
Sbjct: 206 PTISPLNTSYRSGENLNLSCHA--ASNPPAQYSWF-VNGTFQQSTQ-----------ELF 251
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671
I + + G + C A +S + + + KP + + D+ V+
Sbjct: 252 IPNITVNNSGSYTCQAHNSDTGLNRTTV-TTITVYAEPPKPFITSNNSNPVEDEDAVALT 310
Query: 672 CKVVGFPTPTLQWFKDNEELKPGDVYQL-TGTSSL----------GSYCCVAKNVMGKAE 720
C+ T L W+ +N+ L QL +L G Y C +N +
Sbjct: 311 CEPEIQNTTYL-WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH 369
Query: 721 SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKV 780
S + L + + +P +
Sbjct: 370 SDPVI----------------LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQY 413
Query: 781 SWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
SW D + L I + + + C A N + +
Sbjct: 414 SWLIDGNIQQHTQ------------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Query: 841 VPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED 900
V KP + + AV C+ T W+ +G+ L +S +
Sbjct: 462 VSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSP-RLQLSNGN 519
Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAALL 926
T L Y C N + S L
Sbjct: 520 RT--LTLFNVTRNDARAYVCGIQNSVSANRSDPVTL 553
Score = 220 bits (562), Expect = 3e-61
Identities = 97/703 (13%), Positives = 182/703 (25%), Gaps = 148/703 (21%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-------------------------G 36
WYK + I + + G
Sbjct: 25 PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTG 84
Query: 37 TYTCEAVNCMGAAFSTSR------------VIARGQQSFLDNDDVPFN-RAQG------- 76
YT + + + + + D D V F +
Sbjct: 85 FYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLW 144
Query: 77 ---DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
+ + + ++ RT L + V R+D Y N + SV V
Sbjct: 145 WVNNQSLPVSPRLQLSNGNRT-LTLFNVTRNDTASYKCETQNPVSARRSD---SVILNVL 200
Query: 134 DAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
P + + + G L C N +S+ G
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNL----------SCHAASNPPAQYSWFVNG--------- 241
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
L I + ++ G Y+ A N ++ FI +
Sbjct: 242 TFQQSTQE--LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSN 299
Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
V+ L C+ ++ NT + + R + ++ D RT L +
Sbjct: 300 PVEDEDAVAL----------TCEPEIQNT-TYLWWVNNQSLPVSPRLQ-LSNDNRT-LTL 346
Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLLV 371
V R+D G Y NE + V V P + G L
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDHSD---PVILNVLYGPDDPTISPSYTYYRPGVNLSLSC 403
Query: 372 EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
S + W + + + +S+++ +SG +TC A N+
Sbjct: 404 HAASNPPAQYSWLIDGNIQQHTQELF-----------ISNITEKNSGLYTCQANNSASGH 452
Query: 432 HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
+ ++ V P + + ++ V+ C+ T +W+ + + +
Sbjct: 453 SRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSP 511
Query: 492 IFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF 541
L +L Y C N + A S V
Sbjct: 512 RLQL---SNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP---------------VTL 553
Query: 542 NSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM 601
+ L P I + G + L C P P W G+ + +
Sbjct: 554 DVLYGP---DTPIISPPDSSYLSGANLNLSCHSASNPSP-QYSWR-INGIPQQHTQ---- 604
Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHV 643
+ I + ++G + C ++ + + S + V
Sbjct: 605 -------VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640
Score = 177 bits (449), Expect = 2e-46
Identities = 69/476 (14%), Positives = 126/476 (26%), Gaps = 98/476 (20%)
Query: 2 GIPTPQLIWYKDNKKIK-AGDIFALTANPKDPSSLGTYTCEAVNCMGAA----------- 49
P Q W+ + + ++F + G+YTC+A N
Sbjct: 229 SNPPAQYSWFVNGTFQQSTQELFIPNITVNN---SGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 50 ---------FSTSRVIARGQQSFL----DNDDVPFNRAQGDHPIFGNRFRAINRDGRTEL 96
+ S + L + + + + + + ++ D RT L
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRT-L 344
Query: 97 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARL 155
+ V R+D G Y NE + V V P + G L
Sbjct: 345 TLLSVTRNDVGPYECGIQNELSVDHSD---PVILNVLYGPDDPTISPSYTYYRPGVNLSL 401
Query: 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN--RDGRT-----ELNIRRV 208
C A + P + DG EL I +
Sbjct: 402 ----------SCH------------AASNPPA------QYSWLIDGNIQQHTQELFISNI 433
Query: 209 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR- 267
+ G Y+ A+N + + ++ I + V+ E
Sbjct: 434 TEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA 493
Query: 268 SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 327
T + ++P S R + N + L + V R+D Y
Sbjct: 494 QNTTYLWWVN-GQSLPVS-----------PRLQLSNGNRT--LTLFNVTRNDARAYVCGI 539
Query: 328 SNESGYSTAK-FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
N + + L V I D + G L S + W N
Sbjct: 540 QNSVSANRSDPVTLDVLYGPD---TPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN 596
Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ ++ ++ ++ ++G + C N + S S+ V
Sbjct: 597 GIPQQHTQVLF-----------IAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 225 bits (574), Expect = 4e-65
Identities = 96/453 (21%), Positives = 177/453 (39%), Gaps = 87/453 (19%)
Query: 424 AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGI-PTPQLIWY 481
+ + SH F E +T +G V L C P + W
Sbjct: 3 WGSELESSHHHHHHGGRRS-----LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWK 57
Query: 482 KDNKKIKAGD-------------IFALTANPKDPSSLGTYTCEA-VNCMGAAFS-TSRVI 526
KD + G I + + G Y CEA + G+ S T++V+
Sbjct: 58 KDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM 117
Query: 527 ARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY 586
G F+ + E++ A +G + +L+C+V+ P P +I+W
Sbjct: 118 VAG--------------------PLRFLSQTESITAFMGDTVLLKCEVIGDPMP-TIHWQ 156
Query: 587 NKEGV----VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVH 642
K + + ++ G +++I+ L+ D G ++C A + + + + A V
Sbjct: 157 -KNQQDLNPIPGDSRVVVLPSG----ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVR 211
Query: 643 VLM-PKNYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKP-GDVYQL 699
+L P +R+ F++ V+ +G EC V G+P P+ W + E ++ Y L
Sbjct: 212 ILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL 271
Query: 700 TGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
G S+L G+Y CV +S +LT+ P
Sbjct: 272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------------------PP 313
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
F+ + A + + +F VS P P V+W ++ V+ SD +I+ + +L+I
Sbjct: 314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS----NLRI 369
Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
+ +D+ ++C+A N+ G + +S L + P
Sbjct: 370 LGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
Score = 219 bits (559), Expect = 4e-63
Identities = 102/438 (23%), Positives = 155/438 (35%), Gaps = 74/438 (16%)
Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYR 385
+E S + F+ D G L I W +
Sbjct: 3 WGSELESSHHHHHHGGRR----SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58
Query: 386 NDRKLEENKIYRTQH--DGNFYF--IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
+ L R Q +G+ I S D G + C A S S V+V
Sbjct: 59 DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
F + E+I G TV L+C+V+G P P + W K+ + + + + +
Sbjct: 119 ---AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL-----NPIPGDSR 170
Query: 501 --------------DPSSLGTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPFNS 543
P G Y C A N R+++
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH----------- 219
Query: 544 LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMA 602
F++ NV A G A+LEC V P P S W +E + S KY ++
Sbjct: 220 -----RQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP-SFTWLRGEEVIQLRSKKYSLLG 273
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM 662
++ I+ + D G + CV T + SA + VL+P P F+ +
Sbjct: 274 GS----NLLISNVTDDDSGTYTCVVTYKNENISASA-ELTVLVP-----PWFLNHPSNLY 323
Query: 663 TDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCV 711
+ + FEC V G P PT+ W K+ + + P D +Q+ G S+L G Y CV
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCV 383
Query: 712 AKNVMGKAESSTQLTIED 729
A+N G A+SS QL +
Sbjct: 384 AENEAGNAQSSAQLIVPK 401
Score = 205 bits (523), Expect = 3e-58
Identities = 92/408 (22%), Positives = 150/408 (36%), Gaps = 63/408 (15%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGV---VEASDKYHIMADG- 604
+ F+ E + G + +L C P I W K+G+ + D+ + +G
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVP-VIKWK-KDGLILALGMDDRKQQLPNGS 78
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSS-GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
L +I + D+G ++C A+ G A V V P RF+ +++
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP-----LRFLSQTESITA 133
Query: 664 DDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV---YQLTGTSSL----------GSYC 709
G V +C+V+G P PT+ W K+ ++L P + + +L G Y
Sbjct: 134 FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYR 193
Query: 710 CVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKF 768
C A+N + ++ I ++ F++ + A ++
Sbjct: 194 CSARNPASTRTGNEAEVRILS------------DPGLHRQLYFLQRPSNVIAIEGKDAVL 241
Query: 769 TVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
VS P P +W R ++ + L LG +L I + D + C+ T
Sbjct: 242 ECCVSGYPPPSFTWLRGEEVIQLRSKKYSL---LGGSNLLISNVTDDDSGTYTCVVTYKN 298
Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGREL 887
S L + VP P FL + E + EC V G P PT+ W K+G +
Sbjct: 299 ENISASAELTVLVP-----PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV 353
Query: 888 KAGDIHKIISG----------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
D +I+ G D G Y C A N G SSA L
Sbjct: 354 IPSDYFQIVGGSNLRILGVVKSDE----GFYQCVAENEAGNAQSSAQL 397
Score = 186 bits (474), Expect = 1e-51
Identities = 91/437 (20%), Positives = 144/437 (32%), Gaps = 64/437 (14%)
Query: 113 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PT-EIKCQF 169
+E S + F+ D G L S IK +
Sbjct: 3 WGSELESSHHHHHHGGRR----SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58
Query: 170 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGR---TELNIRRVRRDDGGRYSVTASNESGY 226
D + + + +G + R + D G Y AS
Sbjct: 59 D-GLILALG----------MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSG 107
Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN--NTIPF 284
S V P F+ + I +G L KC+ + TI +
Sbjct: 108 SIISRTAKVMVAGP--LRFLSQTESITAFMGDTVLL----------KCEVIGDPMPTIHW 155
Query: 285 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVE 343
Q +PI G+ + G L I R++ D G Y +A N + T E+ +
Sbjct: 156 QKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Query: 344 S--QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQH 400
S + F++R ++ G A L + W R + ++ +K Y
Sbjct: 214 SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLG 273
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTE 460
N S+V+ DSG +TC+ S EL+VLVP P+F +
Sbjct: 274 GSNLLI---SNVTDDDSGTYTCVVTYKNENISASAELTVLVP-----PWFLNHPSNLYAY 325
Query: 461 QG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYT 509
+ + EC V G P P + W K+ + D F + S+L G Y
Sbjct: 326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGG----SNLRILGVVKSDEGFYQ 381
Query: 510 CEAVNCMGAAFSTSRVI 526
C A N G A S++++I
Sbjct: 382 CVAENEAGNAQSSAQLI 398
Score = 157 bits (399), Expect = 8e-42
Identities = 71/356 (19%), Positives = 117/356 (32%), Gaps = 42/356 (11%)
Query: 94 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 153
+ R + D G Y AS S V P F+ + I +G
Sbjct: 82 QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP--LRFLSQTESITAFMGDTV 139
Query: 154 RLLVEIRSPTEIKCQFDLN--NTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
L KC+ + TI + Q +PI G+ + G L I R++
Sbjct: 140 LL----------KCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPG 187
Query: 212 DGGRYSVTASNESGYSTAK-FELSVES--QVPDAPAFIRRLHDIAVKVGTRARLLVEIR- 267
D G Y +A N + T E+ + S + F++R ++ G A L +
Sbjct: 188 DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG 247
Query: 268 SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVT 326
P + I + G L I V DD G Y+
Sbjct: 248 YPPPSFTWLRG-------------EEVIQLRSKKYSLLGGSN-LLISNVTDDDSGTYTCV 293
Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
+ ++ +A EL+V VP P F+ ++ + ++W +N
Sbjct: 294 VTYKNENISASAELTV--LVP--PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN 349
Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ + ++ N V D G + C+AEN G + S +L V P
Sbjct: 350 GDVVIPSDYFQIVGGSNLRI---LGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
Score = 126 bits (318), Expect = 3e-31
Identities = 74/403 (18%), Positives = 118/403 (29%), Gaps = 104/403 (25%)
Query: 4 PTPQLIWYKDNKKIKAGD-------------IFALTANPKDPSSLGTYTCEA-VNCMGAA 49
P + W KD + G I + + G Y CEA + G+
Sbjct: 50 GVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSI 109
Query: 50 FS-TSRVIARGQQSFLD---------NDDVPFN-RAQG-----------DHPIF---GNR 84
S T++V+ G FL D V G + G+
Sbjct: 110 ISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS 169
Query: 85 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVES--QVPDAPAFIRR 141
+ G L I R++ D G Y +A N + T E+ + S + F++R
Sbjct: 170 RVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQR 227
Query: 142 LHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 199
++ G A L + P + I + G
Sbjct: 228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLRG-------------EEVIQLRSKKYSLLGG 274
Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
L I V DD G Y+ + ++ +A EL+V VP P F+ ++
Sbjct: 275 SN-LLISNVTDDDSGTYTCVVTYKNENISASAELTV--LVP--PWFLNHPSNLYAYESMD 329
Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNRFRAINRDGRT 308
+C G + + + I
Sbjct: 330 IEF----------ECA------------VSGKPVPTVNWMKNGDVVIPSDYFQIVGGS-- 365
Query: 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
L I V + D G Y A NE+G + + +L V PA
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP-----KPA 403
Score = 122 bits (307), Expect = 7e-30
Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 21/211 (9%)
Query: 732 NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVV 790
+ L ++ F+ S P + W +D +
Sbjct: 5 SELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA 64
Query: 791 ESDNVKILKE---TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKK 847
+ + + +L + ++ D+ ++C A+ SI S K+ V
Sbjct: 65 LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV---AGP 121
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELK-AGDIHKIISGEDGTCCL 905
+FL + +++ G V L+C+VIG P PT+ W K+ ++L +++ G L
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA--L 179
Query: 906 ----------GIYTCEAHNCMGTTSSSAALL 926
G+Y C A N T + + A +
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEV 210
Score = 94.9 bits (236), Expect = 1e-20
Identities = 48/296 (16%), Positives = 80/296 (27%), Gaps = 92/296 (31%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK--------------DPSSLGTYTCEAVNCMG 47
G P P + W K+ + + + + + P G Y C A N
Sbjct: 147 GDPMPTIHWQKNQQDL-----NPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAS 201
Query: 48 AAFSTS---RVIARGQ-------------QSFLDNDDVPFN-RAQG-----------DHP 79
R+++ ++ D G +
Sbjct: 202 TRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEV 261
Query: 80 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 139
I + G L I V DD G Y+ + ++ +A EL+V VP P F+
Sbjct: 262 IQLRSKKYSLLGGSN-LLISNVTDDDSGTYTCVVTYKNENISASAELTV--LVP--PWFL 316
Query: 140 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIF 188
++ +C G +
Sbjct: 317 NHPSNLYAYESMDIEF----------ECA------------VSGKPVPTVNWMKNGDVVI 354
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
+ + I L I V + D G Y A NE+G + + +L V PA
Sbjct: 355 PSDYFQIVGGS--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP-----KPA 403
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 213 bits (543), Expect = 2e-62
Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 51/301 (16%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
P F +V G +F+C V G + W KDN E++PG Y++T T++L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
G Y C A NV GK S QL + + P+FI+ L+
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGV------------------QEPPRFIKKLE 106
Query: 757 SCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
+ +E ++ ++ SPE KV W++D+ ++ ES ++ V L+++ L V
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVE 165
Query: 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVP 874
D ++ C A N G + +S LK+ P P F ++ V +G V+LEC++ G P
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGTP 220
Query: 875 QPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAA 924
+ W KD REL++G +KI+S E+ + G Y C+A N +G+ + +
Sbjct: 221 PFQVSWHKDKRELRSGKKYKIMS-ENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGS 279
Query: 925 L 925
+
Sbjct: 280 I 280
Score = 195 bits (497), Expect = 3e-56
Identities = 64/303 (21%), Positives = 115/303 (37%), Gaps = 42/303 (13%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
P F + +V +G S +C V I W + Y + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVE-NTAT 62
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT--DDGL 667
+ + + D G++ C A++ +G SA + V P PRF++ L+ D
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSA-QLGVQEP-----PRFIKKLEPSRIVKQDEH 116
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD---VYQLTGTSSL----------GSYCCVAKN 714
+ECK+ G P + W+KD E++ + + + L G Y C A N
Sbjct: 117 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774
G A SST L +++ P F + + + ++
Sbjct: 177 AAGSASSSTSLKVKE------------------PPVFRKKPHPVETLKGADVHLECELQG 218
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
+P +VSW +D +++ KI+ E + + I ++ AD E++C A+ND G
Sbjct: 219 TPPFQVSWHKDKRELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277
Query: 835 CFL 837
+
Sbjct: 278 GSI 280
Score = 185 bits (472), Expect = 9e-53
Identities = 74/307 (24%), Positives = 132/307 (42%), Gaps = 41/307 (13%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
P F + + + +G + IKI W +++R++ Y+ N +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQG-TVSL 466
+ V+ D+G++TC A N G+ CS +L V P P F K+LE + + +Q
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRY 119
Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCM 516
ECK+ G P +++WYKD +I+ F ++ + L G YTCEA N
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV 576
G+A S++ + + P+F K+ V+ G LEC++
Sbjct: 179 GSASSSTSLKVK--------------------EPPVFRKKPHPVETLKGADVHLECELQG 218
Query: 577 PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF 636
P + W+ + + + KY IM++ SI I +++ D GE++C A++ G
Sbjct: 219 TPPF-QVSWHKDKRELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKASNDVGSYT- 275
Query: 637 SAAYVHV 643
+ +
Sbjct: 276 CVGSITL 282
Score = 179 bits (456), Expect = 1e-50
Identities = 71/303 (23%), Positives = 133/303 (43%), Gaps = 38/303 (12%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIF-GNR 298
P F + + + +G + P +I D + I G
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-------------NREIRPGGN 51
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
++ + L + +V + D G+Y+ ASN +G + +L V+ P FI++L
Sbjct: 52 YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEP 107
Query: 359 -IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
VK R +I EIK+ WY+++ +++E+ +R + +++ ++S+ DS
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS 167
Query: 418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTP 476
G +TC A NA G + S L V P P F K+ + T +G V LEC++ G P
Sbjct: 168 GDYTCEAHNAAGSASSSTSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGTPPF 222
Query: 477 QLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
Q+ W+KD +++++G + + + +S+ G Y C+A N +G+ +
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281
Query: 527 ARG 529
+
Sbjct: 282 LKA 284
Score = 177 bits (451), Expect = 5e-50
Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 57/309 (18%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
PFF + ++ G + + +C V G ++ W KDN++I+ G + +T ++L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT-ATL 63
Query: 506 ----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
G YTC A N G ++++ + P FIK
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ--------------------EPPRFIK 103
Query: 556 EVENVK-AKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEIN 613
++E + K EC++ P + WY K+ ++ S K+ + +E+
Sbjct: 104 KLEPSRIVKQDEHTRYECKIGGSPEI-KVLWY-KDETEIQESSKFRMSFVE-SVAVLEMY 160
Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFEC 672
L D G++ C A +++G S+ + V P P F + V T G V EC
Sbjct: 161 NLSVEDSGDYTCEAHNAAGSAS-SSTSLKVKEP-----PVFRKKPHPVETLKGADVHLEC 214
Query: 673 KVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSYCCVAKNVMGKA 719
++ G P + W KD EL+ G Y++ +S+ G Y C A N +G
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 720 ESSTQLTIE 728
+T++
Sbjct: 275 TCVGSITLK 283
Score = 168 bits (428), Expect = 7e-47
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 41/312 (13%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
P F + + + +G + P +I D + I G
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-------------NREIRPGGN 51
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
++ + L + +V + D G+Y+ ASN +G + +L V+ P FI++L
Sbjct: 52 YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEP 107
Query: 252 -IAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGR 307
VK R +I SP ++ D + I ++FR +
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKD-------------ETEIQESSKFRMSFVESV 154
Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 367
L + + +D G Y+ A N +G +++ L V+ P F ++ H + G
Sbjct: 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKGADV 210
Query: 368 RLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
L E++ ++ W+++ R+L K Y+ + I + +V D G + C A N
Sbjct: 211 HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASND 270
Query: 428 VGRSHCSCELSV 439
VG C +++
Sbjct: 271 VGSYTCVGSITL 282
Score = 142 bits (359), Expect = 9e-38
Identities = 55/270 (20%), Positives = 108/270 (40%), Gaps = 41/270 (15%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
G ++ + L + +V + D G+Y+ ASN +G + +L V+ P FI++
Sbjct: 49 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKK 104
Query: 142 LHD-IAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINR 197
L VK R +I SP ++ D + I ++FR
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD-------------ETEIQESSKFRMSFV 151
Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 257
+ L + + +D G Y+ A N +G +++ L V+ P F ++ H + G
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKG 207
Query: 258 TRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRR 314
L E++ +P ++ D + G +++ ++ + T ++I
Sbjct: 208 ADVHLECELQGTPPFQVSWHKD-------------KRELRSGKKYKIMSENFLTSIHILN 254
Query: 315 VRRDDGGRYSVTASNESGYSTAKFELSVES 344
V D G Y ASN+ G T +++++
Sbjct: 255 VDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 131 bits (330), Expect = 8e-34
Identities = 49/272 (18%), Positives = 103/272 (37%), Gaps = 54/272 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G ++ W KDN++I+ G + +T ++L G YTC A N G
Sbjct: 31 GTAPIKITWAKDNREIRPGGNYKMTLVENT-ATLTVLKVTKGDAGQYTCYASNVAGKDSC 89
Query: 52 TSRVI----------ARGQQSFLDNDDVPFN-RAQG-----------DHPIF-GNRFRAI 88
++++ + ++ + + G + I ++FR
Sbjct: 90 SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 149
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 148
+ L + + +D G Y+ A N +G +++ L V+ P F ++ H +
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETL 205
Query: 149 VGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNI 205
G L E++ +P ++ D + G +++ ++ + T ++I
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKD-------------KRELRSGKKYKIMSENFLTSIHI 252
Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
V D G Y ASN+ G T +++++
Sbjct: 253 LNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 214 bits (545), Expect = 6e-60
Identities = 71/573 (12%), Positives = 146/573 (25%), Gaps = 102/573 (17%)
Query: 315 VRRDDGGRYS----VTASNESGYSTAKFELSVESQV--------PDAPAFIRRLHDIAVK 362
D +N+S + V P + + + V
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
V L V + +P I W L + Q+ G + + ++ +G +
Sbjct: 62 VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV-ILKMTETQAGEYLL 120
Query: 423 LAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYK 482
++ +S+ +T + +L C +P P + W
Sbjct: 121 FIQSEATNYTILFTVSIRNT-----LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVL 175
Query: 483 DNKKIKAGD-----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDND 537
+ + ++ + C A N +G + I
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI----------- 224
Query: 538 DVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK 597
L + + K+G + C+ + + W + +E +
Sbjct: 225 -----DLNQT-----PQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274
Query: 598 YHIMADGLGGYSIEINYL-----EAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
+ + I I + D G + C ++ +A V ++
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFINAT 330
Query: 653 RFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL------- 705
E + ++ F + +P W + P + L S+
Sbjct: 331 NSSEDYEIDQYEE--FCFSVRFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHK 387
Query: 706 ---GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV 762
G Y A+N + L I + P+ +
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLNI------------------RRKPQVLA--------E 421
Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESD--------NVKILKETLG--VCHLKIHAL 812
+ + P P +W + + N K ++ G V ++
Sbjct: 422 ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMS 481
Query: 813 EVADQAEWKCIATNDFGQSITSCFLKLNVPKHY 845
E KC A N G S + L P +
Sbjct: 482 EAIKGFLVKCCAYNSLGTSCETILLNSPGPFPF 514
Score = 196 bits (500), Expect = 5e-54
Identities = 77/570 (13%), Positives = 145/570 (25%), Gaps = 137/570 (24%)
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK 469
+ S+ S + ++E+ C L + + +++L+
Sbjct: 20 NDSSVGKSSSYPMVSESPEDLG---CALRPQSS-----GTVYEAAAVEVDVSASITLQVL 71
Query: 470 VMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAA 519
V +W + + F L S+ G Y +
Sbjct: 72 VDAPGNISCLWVFKHSSLNCQPHFDLQNR--GVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 520 FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPW 579
V R + K+ L C P
Sbjct: 130 TILFTVSIR---------------------NTLLYTLRRPYFRKMENQDALVCISESVPE 168
Query: 580 PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
P + W + E+ + + E L + + +C A + G +
Sbjct: 169 P-IVEWVLCDSQGESCKE-----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLF 222
Query: 640 YVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVG-FPTPTLQWFKDNEELKPGDVY 697
+ + +L + G + CK V L W +N+ L+ G+ +
Sbjct: 223 TIDL-------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF 275
Query: 698 QLTG---------TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED 738
+++ G Y C + S +TI
Sbjct: 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK---HPSQSALVTI----------- 321
Query: 739 KLLLLTNNKAPKFIEGL---KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNV 795
FI + + EEF F+V+ P+ + +W +
Sbjct: 322 --------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-- 371
Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK 855
K + E+ A ND Q L + P+ L
Sbjct: 372 ---KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-----PQVLA--- 420
Query: 856 AVLSEGGAVNLECKVIGVPQPTLKWFK-------DGRELKAGDIHKIISGEDGTCCL--- 905
E A C G P P+ W K E+ G ++ + + +
Sbjct: 421 ----EASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS 476
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
+ C A+N +GT+ + L
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCETILL 506
Score = 190 bits (484), Expect = 6e-52
Identities = 49/450 (10%), Positives = 110/450 (24%), Gaps = 69/450 (15%)
Query: 502 PSSLGTYTCEAVNCM--GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVEN 559
L C +N ++ S ++ + +L P + E
Sbjct: 4 NQDLPVIKCVLINHKNNDSSVGKSSS----YPMVSESPEDLGCALRPQSSG--TVYEAAA 57
Query: 560 VKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVD 619
V+ + S L+ V P S W K + + + G+ S+ I +
Sbjct: 58 VEVDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVV--SMVILKMTETQ 114
Query: 620 DGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPT 679
GE+ S + V + + + + C P
Sbjct: 115 AGEYLLFIQSEATNYT-ILFTVSI-----RNTLLYTLRRPYFRKMENQDALVCISESVPE 168
Query: 680 PTLQWFKDNEELKPGDVYQLTGTSSL---------GSYCCVAKNVMGKAESSTQLTIEDI 730
P ++W + + + C A+N +G+ +
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL------- 221
Query: 731 RNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQV 789
T + L V E + ++ ++W +++ +
Sbjct: 222 ------------FTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 790 VESDNVKILKETLG-----VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
E + ++ + + + ++ D + C ++ QS + +
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL---VTIVEKGF 326
Query: 845 YKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH---------KI 895
E+ + + + PQ W +
Sbjct: 327 INATNSSEDYEID--QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFC 384
Query: 896 ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
G Y A N + L
Sbjct: 385 NHKHQP----GEYIFHAENDDAQFTKMFTL 410
Score = 177 bits (451), Expect = 1e-47
Identities = 62/482 (12%), Positives = 123/482 (25%), Gaps = 76/482 (15%)
Query: 77 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
+ + G + I ++ G Y + +E+ T F + + +
Sbjct: 86 HSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV----SIRNTL 141
Query: 137 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 196
+ R + C + +
Sbjct: 142 LYTLRRPYFRKMENQ-----------DALVCISESVPEPIVEWVLCDSQGESCKE----E 186
Query: 197 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 256
+ + + G A NE G + + P L + +KV
Sbjct: 187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTR---LFTIDLNQTPQT--TLPQLFLKV 241
Query: 257 GTRARLLVEI-RSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRV 315
G + + ++L N + + + V
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENK---ALEEGNYFEMSTYSTNRTMIRILF-AFVSSV 297
Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVE 372
R+D G Y+ ++S S +++ FI + D + V
Sbjct: 298 ARNDTGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSEDYEIDQYEEFCFSVR 349
Query: 373 IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH 432
++ +I+ W + + + + N Y I G + AEN +
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQ----KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT 405
Query: 433 CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKD--------- 483
L++ P +L E C G P P W K
Sbjct: 406 KMFTLNIRRK-----P-------QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTE 453
Query: 484 -----------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQS 532
N+K+ + + T N + C A N +G + T + + G
Sbjct: 454 EITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFP 513
Query: 533 FL 534
F+
Sbjct: 514 FI 515
Score = 134 bits (339), Expect = 3e-33
Identities = 56/487 (11%), Positives = 109/487 (22%), Gaps = 95/487 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
+W + + F L S+ G Y +
Sbjct: 74 APGNISCLWVFKHSSLNCQPHFDLQNR--GVVSMVILKMTETQAGEYLLFIQSEATNYTI 131
Query: 52 TSRVIARGQQSFLDNDDVPFNRAQGDHPIF-----GN--------------RFRAINRDG 92
V R + P+ R +
Sbjct: 132 LFTVSIRNTLLYTLRR--PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA 189
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 152
+ + + G A NE G + + P L + +KVG
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTR---LFTIDLNQTPQT--TLPQLFLKVGEP 244
Query: 153 ARLLVEI-RSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
+ + ++L N + + + V R+
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENK---ALEEGNYFEMSTYSTNRTMIRILF-AFVSSVARN 300
Query: 212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIRS 268
D G Y+ ++S S +++ FI + D + V ++
Sbjct: 301 DTGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSEDYEIDQYEEFCFSVRFKA 352
Query: 269 --PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVT 326
F + P + D ++ + G Y
Sbjct: 353 YPQIRCTWTFS-RKSFPCEQKGL---------------DNGYSISKFCNHKHQPGEYIFH 396
Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
A N+ T F L++ + P + + ++ W +
Sbjct: 397 AENDDAQFTKMFTLNI--RRK--PQV--------LAEASASQASCFSDGYPLPSWTWKKC 444
Query: 387 DRKLEENKIYRTQHDGNFYFID-----------LSSVSLFDSGRWTCLAENAVGRSHCSC 435
K T+ N L+ C A N++G S +
Sbjct: 445 SDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETI 504
Query: 436 ELSVLVP 442
L+ P
Sbjct: 505 LLNSPGP 511
Score = 119 bits (299), Expect = 4e-28
Identities = 30/249 (12%), Positives = 62/249 (24%), Gaps = 30/249 (12%)
Query: 700 TGTSSLGSYCCVAKNVM----GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
TG L CV N +SS+ + + L ++ +
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMV------SESPEDLGCALRPQSSGTVYEA 55
Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
+ + V+ V V W + + + + GV + I +
Sbjct: 56 AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL--QNRGVVSMVILKMTET 113
Query: 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
E+ ++ + + + L C VP+
Sbjct: 114 QAGEYLLFIQSEATNYTILFTVSIRNT-----LLYTLRRPYFRKMENQDALVCISESVPE 168
Query: 876 PTLKWFKDGRELK---------AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
P ++W + + K++ G C A N +G + +
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFG----TDIRCCARNELGRECTRLFTI 224
Query: 927 GFEDKSQIE 935
Q
Sbjct: 225 DLNQTPQTT 233
Score = 112 bits (282), Expect = 5e-26
Identities = 41/391 (10%), Positives = 91/391 (23%), Gaps = 81/391 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAGD-----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS--- 53
+P P + W + + ++ + C A N +G +
Sbjct: 165 SVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI 224
Query: 54 ------------RVIARGQQSFLD---------------NDDVPFNRAQGDHPIFGNRFR 86
+ G+ ++ ++ + R
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 87 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH--- 143
+ R + V R+D G Y+ ++S S +++ FI +
Sbjct: 285 TMIRILF--AFVSSVARNDTGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSE 334
Query: 144 DIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
D + V ++ F + P + D
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFS-RKSFPCEQKGL---------------DNGY 378
Query: 202 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 261
++ + G Y A N+ T F L++ + P + + ++
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI--RRK--PQV--------LAEASASQ 426
Query: 262 LLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
P + + + + R + + +
Sbjct: 427 ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNR-KANRKVFGQWVSSSTLNMSEAIK 485
Query: 320 GGRYSVTASNESGYSTAKFELSVESQVPDAP 350
G A N G S L+ P
Sbjct: 486 GFLVKCCAYNSLGTSCETILLNSPGPFPFIQ 516
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 207 bits (528), Expect = 6e-60
Identities = 64/314 (20%), Positives = 108/314 (34%), Gaps = 48/314 (15%)
Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGF-PTPTLQWFKDNEELKPGDVYQLT-GTSSL--- 705
P FVE L +T + V +CKV + W+KD E+ + + G +L
Sbjct: 7 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLIT 66
Query: 706 -------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC 758
G Y + K+ GK +S +L E + + E K + L+
Sbjct: 67 EFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL--------KI 118
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
Q+T ++ + KV+W + + SD VK T L+I+ D+
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG-VTGEQIWLQINEPTPNDKG 177
Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYK---------------KPKFLEELKAVLS--EG 861
++ + + L + + L L V++ EG
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCE 911
A+NL C V G P P + W K+ + L + D + T G Y
Sbjct: 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLV 297
Query: 912 AHNCMGTTSSSAAL 925
N G+ +S +
Sbjct: 298 VKNKYGSETSDFTV 311
Score = 179 bits (456), Expect = 3e-50
Identities = 47/317 (14%), Positives = 103/317 (32%), Gaps = 31/317 (9%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
P F++ + + + +L+C+V + I WY K+ + +K+ G
Sbjct: 7 GPHFVEYLSW-EVTGECNVLLKCKVANIKKET-HIVWY-KDEREISVDEKHDFKD---GI 60
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK------PRFVESLKAV 661
++ I D G ++ + G K S + K LK
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRG-KDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSY 708
T +G+ + + W + ++ D + L G Y
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 179
Query: 709 CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKL---LLLTNNKAPKFIEGLKSCQATVNEE 765
+ + + L+ + +E +L + N+A +
Sbjct: 180 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA 239
Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
T V P P+VSW ++++ + D+ + E + I+ + AD ++ +
Sbjct: 240 LNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 299
Query: 826 NDFGQSITSCFLKLNVP 842
N +G + + + +P
Sbjct: 300 NKYGSETSDFTVSVFIP 316
Score = 176 bits (447), Expect = 5e-49
Identities = 52/322 (16%), Positives = 105/322 (32%), Gaps = 28/322 (8%)
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGN 403
P F+ L V L ++ E I WY+++R++ ++ + +
Sbjct: 3 DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 61
Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY------KAPFFTKELEAI 457
I S D+G + + ++ G+ +L K K +L+
Sbjct: 62 TLLIT--EFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 458 LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALT---ANPKDPSSL 505
T +G + ++ W + I+ G+ L P D
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK--- 176
Query: 506 GTYTCEAVNCMGAAFSTSRV-IARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
G Y E + T + +++ + + ++ A + + V +
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
G + L C V P P + W E + + D ++ + IN + D G++
Sbjct: 237 GKALNLTCNVWGDPPPE-VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 625 CVATSSSGVKQFSAAYVHVLMP 646
V + G + S V V +P
Sbjct: 296 LVVKNKYG-SETSDFTVSVFIP 316
Score = 168 bits (428), Expect = 2e-46
Identities = 51/326 (15%), Positives = 100/326 (30%), Gaps = 55/326 (16%)
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPI 294
P F+ L V L ++ + T I D + I
Sbjct: 3 DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKD-------------EREI 48
Query: 295 -FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-------QV 346
+ +DG L I + D G Y V ++ G ++ +L E+
Sbjct: 49 SVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVC 106
Query: 347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
L + G + V ++K++W N + + +T G +
Sbjct: 107 KKIALSATDLKIQSTAEGIQLYSFVTYYVE-DLKVNWSHNGSAIRYSDRVKTGVTGEQIW 165
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL----------------VPKAYKAPFF 450
+ ++ + D G++ + + +LS + + +A
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225
Query: 451 TKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL---- 505
+ + ++G ++L C V G P P++ W K+ K + + D L +
Sbjct: 226 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTING 285
Query: 506 ------GTYTCEAVNCMGAAFSTSRV 525
G Y N G+ S V
Sbjct: 286 VSTADSGKYGLVVKNKYGSETSDFTV 311
Score = 148 bits (374), Expect = 2e-39
Identities = 47/335 (14%), Positives = 98/335 (29%), Gaps = 44/335 (13%)
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPI 187
P F+ L V L ++ + T I D + I
Sbjct: 3 DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKD-------------EREI 48
Query: 188 -FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
+ +DG L I + D G Y V ++ G ++ +L E+ +
Sbjct: 49 SVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA----FKELM 102
Query: 247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRD 305
+ T ++ ++ + I + +R +
Sbjct: 103 MEVCKKIALSATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG 161
Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD----------------- 348
+ L I +D G+Y + + +LS ++
Sbjct: 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYFI 407
A + ++ G L + ++ W +N++ L + G +
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYF 281
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
++ VS DSG++ + +N G +SV +P
Sbjct: 282 TINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 135 bits (341), Expect = 6e-35
Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 22/231 (9%)
Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKET 801
+ P F+E L + T +V+ I E + W++D++++ +
Sbjct: 2 IDPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-- 58
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHY------KKPKFLEELK 855
G+C L I D ++ I +D G+ + L K K +LK
Sbjct: 59 -GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLK 117
Query: 856 AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL---------- 905
+ G V + W +G ++ D K L
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-GVTGEQIWLQINEPTPNDK 176
Query: 906 GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQE 956
G Y E + + L G + + K+A I + +
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 227
Score = 124 bits (312), Expect = 4e-31
Identities = 44/273 (16%), Positives = 89/273 (32%), Gaps = 26/273 (9%)
Query: 90 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
+DG L I + D G Y V ++ G ++ +L E+ + +
Sbjct: 57 KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA----FKELMMEVCKKIALS 112
Query: 150 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRV 208
T ++ ++ + I + +R + + L I
Sbjct: 113 ATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP 171
Query: 209 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 268
+D G+Y + + +LS ++ +A A +RL A+ RAR+L +
Sbjct: 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEAYAEFQRLKQAAIAEKNRARVLGGLPD 230
Query: 269 PTEIKCQFDLNNTIPFSFRAQG-----------DHPIFGNRFRAI--NRDGRTELNIRRV 315
I+ + + G + + + + I V
Sbjct: 231 VVTIQ----EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV 286
Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
D G+Y + N+ G T+ F +SV +P+
Sbjct: 287 STADSGKYGLVVKNKYGSETSDFTVSV--FIPE 317
Score = 114 bits (286), Expect = 8e-28
Identities = 47/293 (16%), Positives = 91/293 (31%), Gaps = 65/293 (22%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALT----------ANPKDPSSLGTYTCEAVNCMGAAFSTS 53
++WYKD ++I + + KD G Y + G S
Sbjct: 35 KETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA---GIYEVILKDDRGKDKSRL 91
Query: 54 RVIARG---------QQSFLDNDDVPFN-RAQG---------------------DHPI-F 81
+++ ++ L D+ A+G I +
Sbjct: 92 KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY 151
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
+R + + L I +D G+Y + + +LS ++ +A A +R
Sbjct: 152 SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEAYAEFQR 210
Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------DHPIFGN 190
L A+ RAR+L + I+ + + G + + +
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQ----EGKALNLTCNVWGDPPPEVSWLKNEKALASD 266
Query: 191 RFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
+ I V D G+Y + N+ G T+ F +SV +P+
Sbjct: 267 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV--FIPE 317
Score = 93.8 bits (233), Expect = 8e-21
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 17/154 (11%)
Query: 845 YKKPKFLEELKAVLSEGGAVNLECKVIGV-PQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
+ P F+E L ++ V L+CKV + + + W+KD RE+ + H +DG C
Sbjct: 5 FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGIC 61
Query: 904 CL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLST 953
L GIY + G S L+ K E E K + + L
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFK---ELMMEVCKKIALSATDLKI 118
Query: 954 IQEEGTSEIYDTPMASIEEREISFSFDGKEVSVS 987
++Y +E+ ++++S +G + S
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS 152
Score = 69.9 bits (171), Expect = 7e-13
Identities = 23/189 (12%), Positives = 43/189 (22%), Gaps = 61/189 (32%)
Query: 2 GIPTPQLIWYKDNKKIKA---------GDIFALT---ANPKDPSSLGTYTCEAVNCMGAA 49
+ ++ W + I+ G+ L P D G Y E +
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK---GKYVMELFDGKTGH 190
Query: 50 FSTSRVIARGQQSFLDNDDVPFN-------------------------------RAQG-- 76
T + + G
Sbjct: 191 QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP 250
Query: 77 ---------DHPIFGNRFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 125
+ + + + I V D G+Y + N+ G T+ F
Sbjct: 251 PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT 310
Query: 126 LSVESQVPD 134
+SV +P+
Sbjct: 311 VSV--FIPE 317
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 212 bits (540), Expect = 2e-59
Identities = 77/565 (13%), Positives = 144/565 (25%), Gaps = 119/565 (21%)
Query: 416 DSGRWTC----LAENAVGRSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKV 470
+ + C L G S S P P + I+ + L C
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSP-----PSIHPGKSDLIVRVGDEIRLLCTD 60
Query: 471 MGIPTPQLIWYKDNKKIKAGDIFA-LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG 529
G + W + + + ++ G YTC + + ++ V R
Sbjct: 61 PG----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRD 113
Query: 530 QQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKE 589
++ K ++ C + P Y
Sbjct: 114 --------------------PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVT--NYSLKGC 151
Query: 590 GVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY 649
+ D G I + A C + V P
Sbjct: 152 QGKPLPKDLRFIPDPKAGIMI-KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR-PAFK 209
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLT------- 700
P S + + +G + C + + W ++N + K + Y
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269
Query: 701 -GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
++L G + C A N G A +T L + D
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD------------------KG 311
Query: 750 KFI---EGLKSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILKET---- 801
+ E V+ P+P+ W ++ + E
Sbjct: 312 FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI 371
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEG 861
V L + L+ + + + +N + + + +N P+ L
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK-----PEILTY-----DRL 421
Query: 862 GAVNLECKVIGVPQPTLKWFK-------DGRELKAGDIHKIISGEDGTCCL--------- 905
L+C G P+PT+ W+ + D+ + S L
Sbjct: 422 VNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSS 481
Query: 906 -----GIYTCEAHNCMGTTSSSAAL 925
G C+A+N +G TS+
Sbjct: 482 AFKHNGTVECKAYNDVGKTSAYFNF 506
Score = 201 bits (513), Expect = 8e-56
Identities = 80/571 (14%), Positives = 164/571 (28%), Gaps = 113/571 (19%)
Query: 209 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 268
+ T + SV P P+ D+ V+VG RL
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRL------ 56
Query: 269 PTEIKCQFDLNNTIPFSFRAQGDHPI--FGNRFRAINRDGRTELNIRRVRRDDGGRYSVT 326
C + N + + E + + G+Y+ T
Sbjct: 57 ----LCT--------------DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCT 98
Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
+ S + V D + K + + P E+ + +
Sbjct: 99 NKHGLSNS-------IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDP-EVTNYSLKG 150
Query: 387 D--RKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
+ L ++ + S + C + G+S S + + V A
Sbjct: 151 CQGKPLPKDLRFIPDPKAGIMIK--SVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPA 207
Query: 445 YKA-PFFTKELEAILTEQG-TVSLECKVMGIPTP-QLIWYKDNKKIKAGDIFALTANPKD 501
+KA P + + L +G ++ C + + + W ++N + K + + +
Sbjct: 208 FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267
Query: 502 P----SSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPP 547
++L G + C A N G+A T+ + + F ++ P
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK---------GFINIFPM 318
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG--- 604
+F+ + G + L + P P W + + ++
Sbjct: 319 INTTVFVND--------GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESN 370
Query: 605 -LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
+ + L+ + G + + ++S + V+V P + + V
Sbjct: 371 IRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAF-NVYVNTK-----PEILTYDRLVN- 423
Query: 664 DDGLVSFECKVVGFPTPTLQWFK-------DNEELKPGDVYQLTGTSSL----------- 705
+C GFP PT+ W+ + + P DV L +
Sbjct: 424 ----GMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479
Query: 706 -------GSYCCVAKNVMGKAESSTQLTIED 729
G+ C A N +GK + +
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
Score = 186 bits (474), Expect = 1e-50
Identities = 85/582 (14%), Positives = 149/582 (25%), Gaps = 110/582 (18%)
Query: 102 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 161
+ T + SV P P+ D+ V+VG RL
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRL------ 56
Query: 162 PTEIKCQFDLNNTIPFSFRAQGDHPI--FGNRFRAINRDGRTELNIRRVRRDDGGRYSVT 219
C + N + + E + + G+Y+ T
Sbjct: 57 ----LCT--------------DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCT 98
Query: 220 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN 279
+ S+ V D + K + T ++C
Sbjct: 99 NKHGLSN-------SIYVFVRDPAKLFLVDRSLYGKED----------NDTLVRCPLTDP 141
Query: 280 NTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESG-YSTAK 337
+S + P+ + D + + I+ V+R + E + K
Sbjct: 142 EVTNYSLKGCQGKPLPKD--LRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEK 199
Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIY 396
F L V P ++ G + I+ + + W R + + + + Y
Sbjct: 200 FILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKY 259
Query: 397 RTQHDGNFYFIDLS-----SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT 451
+ H G+F + + S + DSG + C A N G ++ + L V+ F
Sbjct: 260 NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG--FINIFP 317
Query: 452 KELEAILTEQG-TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDP----SSL 505
+ G V L + P P+ W N+ + + S L
Sbjct: 318 MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSEL 377
Query: 506 ----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
GTYT N A V P +
Sbjct: 378 HLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN--------------------TKPEILT 417
Query: 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK-----------YHIMADG 604
+ +L+C P P +I WY G + G
Sbjct: 418 YDR------LVNGMLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFG 470
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
I+ +G +C A + G
Sbjct: 471 KLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAY-FNFAFKGN 511
Score = 183 bits (466), Expect = 1e-49
Identities = 71/537 (13%), Positives = 141/537 (26%), Gaps = 83/537 (15%)
Query: 36 GTYTCEAV----NCMGAAFSTSRV---------IARGQQSFLDNDDVPFN-RAQGDHPIF 81
+ C + G++ + + D++ G
Sbjct: 8 WDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVKWT 67
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
N + + E + + G+Y+ T + S+ V D
Sbjct: 68 FEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN-------SIYVFVRDPAKLFLV 120
Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
+ K + T ++C +S + P+ + D +
Sbjct: 121 DRSLYGKED----------NDTLVRCPLTDPEVTNYSLKGCQGKPLPKD--LRFIPDPKA 168
Query: 202 ELNIRRVRR-DDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
+ I+ V+R + E + KF L V P ++ G
Sbjct: 169 GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEE 228
Query: 260 ARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR 316
+ I+ S + + N+ + + + + R L I R
Sbjct: 229 FTVTCTIKDVSSSVYSTWKRE-NSQTKLQEK----YNSWHHGDFNYERQA--TLTISSAR 281
Query: 317 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-S 375
+D G + A+N G + L V + F + V G L+VE
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVVDK-GFINIFPMINTTVFVNDGENVDLIVEYEAF 340
Query: 376 PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID-----LSSVSLFDSGRWTCLAENAVGR 430
P W +R + + + L+ + + G +T L N+
Sbjct: 341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400
Query: 431 SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG 490
+ + + V P + L+C G P P + WY +
Sbjct: 401 AAIAFNVYVNTK-----PEILTYDRLV-----NGMLQCVAAGFPEPTIDWYFCPGTEQRC 450
Query: 491 D---------------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
+ + + GT C+A N +G +
Sbjct: 451 SASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFA 507
Score = 179 bits (456), Expect = 2e-48
Identities = 70/572 (12%), Positives = 140/572 (24%), Gaps = 108/572 (18%)
Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 375
+ T + SV P P+ D+ V+VG RLL
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG 62
Query: 376 PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435
+ W ++ ++G++TC ++ + S
Sbjct: 63 F----VKWTFEILDE--------TNENKQNEWITEKAEATNTGKYTCTNKHGLSNS---I 107
Query: 436 ELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYK--------DNKK 486
+ V P ++ ++ + C + P K + +
Sbjct: 108 YVFVRDP-----AKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLR 161
Query: 487 IKAGDIFALT-ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLM 545
+ + K C G + + + I
Sbjct: 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQ-EGKSVLSEKFI--------------LKVRP 206
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG- 604
P+ + + G + C + W + + +KY+ G
Sbjct: 207 AFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGD 266
Query: 605 ---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL-MPKNYRKPRFVESLKA 660
++ I+ D G + C A ++ G + + V+ P ++
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT-TLEVVDKGFINIFPMINTTVFV 325
Query: 661 VMTDDGLVSFECKVVGFPTPTL-QWFKDNEELKPG--------DVYQLTGTSSL------ 705
++ V + FP P QW N + + S L
Sbjct: 326 NDGEN--VDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383
Query: 706 ----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT 761
G+Y + N A + + + N P+ +
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYV------------------NTKPEILT------YD 419
Query: 762 VNEEFKFTVQVSISPEPKVSWF-------RDDQQVVESDNVKILKETLG----VCHLKIH 810
+ PEP + W+ R V+ D + V I
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479
Query: 811 ALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
+ +C A ND G++
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511
Score = 149 bits (378), Expect = 3e-38
Identities = 70/482 (14%), Positives = 127/482 (26%), Gaps = 73/482 (15%)
Query: 4 PTPQLIWYKDNKKIKAGDIFA-LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQS 62
+ W + + + ++ G YTC + + S + +
Sbjct: 60 DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN--SIYVFVRDPAKL 117
Query: 63 FLDNDDVPFN----------------------RAQGDHPIFGNRFRAINRDGRTELNIRR 100
FL + + QG RF D + + I+
Sbjct: 118 FLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP---DPKAGIMIKS 174
Query: 101 VRR-DDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 158
V+R + E + KF L V P ++ G +
Sbjct: 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT 234
Query: 159 IR---SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
I+ S + + N+ + + + + R L I R +D G
Sbjct: 235 IKDVSSSVYSTWKRE-NSQTKLQEK----YNSWHHGDFNYERQA--TLTISSARVNDSGV 287
Query: 216 YSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEI 272
+ A+N G + L V + F + V G L+VE P
Sbjct: 288 FMCYANNTFGSANVTTTLEVVDK-GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ 346
Query: 273 KCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 332
+ + N T + N +EL++ R++ +GG Y+ SN
Sbjct: 347 QWIYM-NRTFT------DKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 399
Query: 333 YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE 392
+ F + V + P + L E I WY +
Sbjct: 400 NAAIAFNVYVNT----KPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQR 449
Query: 393 N------------KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+ S + +G C A N VG++ +
Sbjct: 450 CSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK 509
Query: 441 VP 442
Sbjct: 510 GN 511
Score = 92.8 bits (230), Expect = 1e-19
Identities = 38/284 (13%), Positives = 76/284 (26%), Gaps = 58/284 (20%)
Query: 2 GIPTP-QLIWYKDNKKIKAGDIFALTANPKDP----SSL----------GTYTCEAVNCM 46
+ + W ++N + K + + + ++L G + C A N
Sbjct: 237 DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF 296
Query: 47 GAAFSTS--RVIARGQ----------QSFLDNDDVPFN-RAQG------------DHPIF 81
G+A T+ V+ +G D ++V + +
Sbjct: 297 GSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFT 356
Query: 82 GNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
+ + L++ R++ +GG Y+ SN + F + V +
Sbjct: 357 DKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT----K 412
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
P + L P I F S N
Sbjct: 413 PEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+ +I G A N+ G ++A F + +
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
Score = 71.6 bits (175), Expect = 5e-13
Identities = 29/244 (11%), Positives = 51/244 (20%), Gaps = 61/244 (25%)
Query: 699 LTGTSSLGSYCCV----AKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
+ G + CV + G ++ S P G
Sbjct: 1 MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPS------------------PPSIHPG 42
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
V +E + V W + + E
Sbjct: 43 KSDLIVRVGDEIRLLCTD----PGFVKWTFEILDETNENKQNEWI---------TEKAEA 89
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP 874
+ ++ C + SI + + P FL + E + C + P
Sbjct: 90 TNTGKYTCTNKHGLSNSIY---VFVRDPAKL----FLVDRSLYGKEDNDTLVRCPLTD-P 141
Query: 875 QPTLKWFK--DGRELKAGD-----------IHKIISGEDGTCCLGIYTCEAHNCMGTTSS 921
+ T K G+ L I + C G +
Sbjct: 142 EVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHR----LCLHCSVDQ-EGKSVL 196
Query: 922 SAAL 925
S
Sbjct: 197 SEKF 200
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 203 bits (518), Expect = 8e-58
Identities = 83/421 (19%), Positives = 145/421 (34%), Gaps = 74/421 (17%)
Query: 447 APFFTKE----LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT------ 496
P F +E + + +E+ V L C+V G P P + W + + G F +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 497 --ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
NP GTY C A N G SR L
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTI--VSREA----------------KLQFAYLENFKT 106
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGYSIEIN 613
+ V + G +L C S W N+ + + ++ G ++ I
Sbjct: 107 RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG----NLYIA 162
Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVL-----MPKNYRKPRFVESLKAVMTDDG-L 667
+E D G + CV T++ + ++ + Y V+ + V + G
Sbjct: 163 KVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTT 222
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
V EC +G P PT+ W + + + + L GSY CVA+N G
Sbjct: 223 VKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG 282
Query: 718 KAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPE 777
K + QLT P +++ + + E + + + P+
Sbjct: 283 KNVAKGQLTFYA------------------QPNWVQIINDIHVAMEESVFWECKANGRPK 324
Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
P W ++ ++ D ++I + T L I + ++D ++C+A N G +S L
Sbjct: 325 PTYRWLKNGDPLLTRDRIQIEQGT-----LNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Query: 838 K 838
Sbjct: 380 S 380
Score = 191 bits (487), Expect = 1e-53
Identities = 86/406 (21%), Positives = 149/406 (36%), Gaps = 56/406 (13%)
Query: 349 APAFIRRLHDIAVKV---GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNF 404
P F++ + + + +L E++ + I W N ++ +R + DG+
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-T 463
+ + D+G + C+A N+ G S E + AY F T+ + +G
Sbjct: 65 LINNPNKTQ--DAGTYQCIATNSFGTIV-SREAKLQF--AYLENFKTRTRSTVSVRRGQG 119
Query: 464 VSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALT----------ANPKDPSSLGTYTCEA 512
+ L C W + + ++ D +G YTC
Sbjct: 120 MVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSD---VGNYTCVV 176
Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
N + + + +M I ++ E V A+ GT+ LEC
Sbjct: 177 TNTVTNHKVLGPPTPL---------ILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227
Query: 573 QVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSG 632
L P P +I W +G A ++G +EI + D G ++CVA +S G
Sbjct: 228 FALGNPVP-TILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDAGSYECVAENSRG 282
Query: 633 VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEEL 691
K + + P +V+ + + V +ECK G P PT +W K+ + L
Sbjct: 283 -KNVAKGQLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 692 KPGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTI 727
D Q+ +L G Y CVA+N G SS +L++
Sbjct: 337 LTRDRIQIEQ-GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 187 bits (477), Expect = 2e-52
Identities = 86/408 (21%), Positives = 146/408 (35%), Gaps = 59/408 (14%)
Query: 547 PGPAPIFIKEVENVKAKI---GTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIM 601
PG P+F++E +V + L C+V P P I W G V D + +
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKP-HIRWK-LNGTDVDIGMDFRYSV 59
Query: 602 ADGLGGYSIEI-NYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
DG S+ I N + D G ++C+AT+S G A + +N+ +
Sbjct: 60 VDG----SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENF----KTRTRST 111
Query: 661 VMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGD-VYQLTGTSSL----------GS 707
V G + C + W + + + T +L G+
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 171
Query: 708 YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFK 767
Y CV N + + T +RN + + ++ ++ A K
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY-------EPKIEVQFPETVPAEKGTTVK 224
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
+P P + W R D + + + L+I + D ++C+A N
Sbjct: 225 LECFALGNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDAGSYECVAENS 280
Query: 828 FGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRE 886
G+++ L P +++ + + ++ +V ECK G P+PT +W K+G
Sbjct: 281 RGKNVAKGQLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335
Query: 887 LKAGDIHKIISG---------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
L D +I G D G+Y C A N G SSA L
Sbjct: 336 LLTRDRIQIEQGTLNITIVNLSDA----GMYQCVAENKHGVIFSSAEL 379
Score = 148 bits (375), Expect = 9e-39
Identities = 77/408 (18%), Positives = 135/408 (33%), Gaps = 48/408 (11%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
P F++ + + + ++ C+ N ++ G G FR
Sbjct: 5 GPVFVQEPSHVMFPLDSE-------EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRY 57
Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR-LHDIA 253
DG + L + D G Y A+N G ++ + Q F R ++
Sbjct: 58 SVVDG-SLLINNPNKTQDAGTYQCIATNSFGTIVSR---EAKLQFAYLENFKTRTRSTVS 113
Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNI 312
V+ G L C ++ +++ NR G L I
Sbjct: 114 VRRGQGMVL----------LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYI 161
Query: 313 RRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDA----PAFIRRLHDIAVKVGT 365
+V + D G Y+ +N L + + ++ + + GT
Sbjct: 162 AKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGT 221
Query: 366 RARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA 424
+L +P I W R D K K R + +G + + D+G + C+A
Sbjct: 222 TVKLECFALGNPV-PTILWRRADGKPIARKARRHKSNGILE---IPNFQQEDAGSYECVA 277
Query: 425 ENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKD 483
EN+ G++ +L+ P + + + I +V ECK G P P W K+
Sbjct: 278 ENSRGKNVAKGQLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN 332
Query: 484 NKKIKAGDIF-----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
+ D L + S G Y C A N G FS++ +
Sbjct: 333 GDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 130 bits (328), Expect = 1e-32
Identities = 75/369 (20%), Positives = 124/369 (33%), Gaps = 48/369 (13%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
G FR DG + L + D G Y A+N G ++ + Q F R
Sbjct: 52 GMDFRYSVVDG-SLLINNPNKTQDAGTYQCIATNSFGTIVSR---EAKLQFAYLENFKTR 107
Query: 142 -LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDG 199
++V+ G L C ++ +++ NR G
Sbjct: 108 TRSTVSVRRGQGMVL----------LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG 157
Query: 200 RTELNIRRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDA----PAFIRRLHDI 252
L I +V + D G Y+ +N L + + ++ +
Sbjct: 158 --NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFRAINRDGRTELN 311
+ GT +L +C N RA G R N L
Sbjct: 216 PAEKGTTVKL----------ECFALGNPVPTILWRRADGKPIARKARRHKSNG----ILE 261
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV 371
I +++D G Y A N G + AK +L+ + P +++ ++DI V +
Sbjct: 262 IPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----QPNWVQIINDIHVAMEESVFWEC 317
Query: 372 EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
+ + W +N L R Q + I + V+L D+G + C+AEN G
Sbjct: 318 KANGRPKPTYRWLKNGDPLLTRD--RIQIEQGTLNI--TIVNLSDAGMYQCVAENKHGVI 373
Query: 432 HCSCELSVL 440
S ELSV+
Sbjct: 374 FSSAELSVI 382
Score = 123 bits (309), Expect = 3e-30
Identities = 73/394 (18%), Positives = 120/394 (30%), Gaps = 93/394 (23%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTCEAVNCMGAAFS-T 52
G P P + W + + G F + NP GTY C A N G S
Sbjct: 34 GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE 93
Query: 53 SRVIARGQQSFLDNDDVPFNRAQGD------HPIFG----------NRFRAINRDGRT-- 94
+++ ++F + +G P N + + + R
Sbjct: 94 AKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS 153
Query: 95 ----ELNIRRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDA----PAFIRRLH 143
L I +V + D G Y+ +N L + + ++
Sbjct: 154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFRAINRDGRTE 202
+ + GT +L +C N RA G R N
Sbjct: 214 TVPAEKGTTVKL----------ECFALGNPVPTILWRRADGKPIARKARRHKSNG----I 259
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
L I +++D G Y A N G + AK +L+ + P +++ ++DI V +
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----QPNWVQIINDIHVAMEESVFW 315
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNRFRAINRDGRTELN 311
+C+ A G P+ I + LN
Sbjct: 316 ----------ECK------------ANGRPKPTYRWLKNGDPLLTRDRIQIEQG---TLN 350
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
I V D G Y A N+ G + ELSV ++
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 89.1 bits (221), Expect = 8e-19
Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 29/197 (14%)
Query: 748 APKFIEGLKSCQATVNEE---FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE--TL 802
P F++ ++ E K + +V +P+P + W + V + + +L
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS--E 860
L + + D ++CIATN FG +I S KL F ++ +S
Sbjct: 65 ----LINNPNKTQDAGTYQCIATNSFG-TIVSREAKLQFAY---LENFKTRTRSTVSVRR 116
Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYT 909
G + L C + + W + + + +S E G L G YT
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDN-RRFVSQETGN--LYIAKVEKSDVGNYT 173
Query: 910 CEAHNCMGTTSSSAALL 926
C N +
Sbjct: 174 CVVTNTVTNHKVLGPPT 190
Score = 69.9 bits (171), Expect = 1e-12
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
P F++E V+ SE V L C+V G P+P ++W +G ++ G + DG+
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV-VDGSL 64
Query: 904 CL---------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEK-------AEEGKKALI 945
+ G Y C A N GT S A L F + G+ ++
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 200 bits (510), Expect = 1e-57
Identities = 58/316 (18%), Positives = 109/316 (34%), Gaps = 51/316 (16%)
Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
P E + V D + ++FEC P W KD + ++ + +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
G Y C + G A S E R + ++
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEH------KFPTVPVKSEL 115
Query: 757 SCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKIL-KETLGVCHLKIHALEV 814
+ + + +F +Q +S KV++ +++++ E K+ G+ + + L+
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 175
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKK--------------PKFLEELKAVLSE 860
D+ + + + ++ L +V K +K P F+E L ++
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 235
Query: 861 GGAVNLECKVIGV-PQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYT 909
V L+CKV + + + W+KD RE+ + H +DG C L GIY
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGICTLLITEFSKKDAGIYE 292
Query: 910 CEAHNCMGTTSSSAAL 925
+ G S L
Sbjct: 293 VILKDDRGKDKSRLKL 308
Score = 173 bits (440), Expect = 3e-48
Identities = 54/318 (16%), Positives = 96/318 (30%), Gaps = 45/318 (14%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALT 496
PF + + + + +++ EC P + W KD + G+ +T
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 497 ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKE 556
LG Y+C+ + G A S + + +K
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK--------RLLALSHEHKFPTVPVKS 113
Query: 557 VENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG-YSIEINYL 615
V+ Q + + E + KY + D G + + L
Sbjct: 114 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 173
Query: 616 EAVDDGEWKCVATSSSGVKQFSA-------------AYVHVLMPKNYRKPRFVESLKAVM 662
+ D+G + + A + P FVE L +
Sbjct: 174 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV 233
Query: 663 TDDGLVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLT-GTSSL----------GSYCC 710
T + V +CKV T + W+KD E+ + + G +L G Y
Sbjct: 234 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEV 293
Query: 711 VAKNVMGKAESSTQLTIE 728
+ K+ GK +S +L E
Sbjct: 294 ILKDDRGKDKSRLKLVDE 311
Score = 172 bits (438), Expect = 6e-48
Identities = 57/315 (18%), Positives = 107/315 (33%), Gaps = 32/315 (10%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
G P + V NV S EC + P W E S + + + G
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDKMTPK-SE-FSWSKDYVSTEDSPRLEVESKG-NK 57
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM------PKNYRKPRFVESLKAV 661
+ L D G + C T + G+ L ++ V+S AV
Sbjct: 58 TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117
Query: 662 -MTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQL-----TGTSSL--------- 705
+ + G V F + + + + +E+ G Y++ TG +
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177
Query: 706 -GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED-KLLLLTNNKAPKFIEGLKSCQATVN 763
G+Y ++ S+ L + + E + + + P F+E L S + T
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGE 236
Query: 764 EEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
+V+ I E + W++D++++ + G+C L I D ++
Sbjct: 237 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GICTLLITEFSKKDAGIYEV 293
Query: 823 IATNDFGQSITSCFL 837
I +D G+ + L
Sbjct: 294 ILKDDRGKDKSRLKL 308
Score = 155 bits (393), Expect = 5e-42
Identities = 41/311 (13%), Positives = 98/311 (31%), Gaps = 28/311 (9%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
P + ++ + +P + W ++ E++ + GN +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDKMTPK-SEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSC--------ELSVLVPKAYKAPFFTKELEAILTE 460
+ + D G ++C + G + L++ + EL + E
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 461 QGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPS-SL----------GTY 508
+G V + ++ + + K+I G + + + + GTY
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 509 TCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSA 568
T + + ST ++ + + + P F+ E + + +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG-PHFV-EYLSWEVTGECNV 239
Query: 569 ILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVA 627
+L+C+V I WY K+ + +K+ G ++ I D G ++ +
Sbjct: 240 LLKCKVANIKKETHIVWY-KDEREISVDEKHDFKD---GICTLLITEFSKKDAGIYEVIL 295
Query: 628 TSSSGVKQFSA 638
G +
Sbjct: 296 KDDRGKDKSRL 306
Score = 138 bits (348), Expect = 6e-36
Identities = 45/270 (16%), Positives = 89/270 (32%), Gaps = 36/270 (13%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
P E + + F +P+ + SW +D +S +++ + +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKG-NKTKM 60
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSC--------FLKLNVPKHYKKPKFLEELKAVLS 859
L + D + C T+ G + + L L+ + EL +
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 860 EGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCCL----------GI 907
E G V + + + + +E+ G +K+ I G + G
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180
Query: 908 YTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDP-----SLSTIQEEGTS-- 960
YT + + T S+ L+G K ++AE ++ I K LS +
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240
Query: 961 ---EIYDTPMASIEEREISFSFDGKEVSVS 987
++ + E I + D +E+SV
Sbjct: 241 LKCKVANIKK----ETHIVWYKDEREISVD 266
Score = 128 bits (322), Expect = 1e-32
Identities = 39/337 (11%), Positives = 100/337 (29%), Gaps = 61/337 (18%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 192
P + ++ + +P E D R
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKD-------------YVSTEDSPRL 49
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP--------DAPA 244
++ +T++ + + DD G YS ++ G +++ E +
Sbjct: 50 EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTV 109
Query: 245 FIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGN---R 298
++ + + + R ++ ++ F+ + IF +
Sbjct: 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-------------EKEIFEGPKYK 156
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV---------------E 343
G E+ + +++ +D G Y+ + + + L E
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQE 216
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDG 402
P F+ L V L ++ E I WY+++R++ ++ +
Sbjct: 217 WIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKD 273
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ ++ S D+G + + ++ G+ +L
Sbjct: 274 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 112 bits (282), Expect = 3e-27
Identities = 40/295 (13%), Positives = 89/295 (30%), Gaps = 60/295 (20%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP-------- 133
R ++ +T++ + + DD G YS ++ G +++ E +
Sbjct: 46 SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK 105
Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
++ + + + R ++ ++ F+ + IF
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-------------EKEIFEG 152
Query: 191 ---RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV------------ 235
+ G E+ + +++ +D G Y+ + + + L
Sbjct: 153 PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEF 212
Query: 236 ---ESQVPDAPAFIRRLHDIAVKVGTRARLLVEI---RSPTEIKCQFDLNNTIPFSFRAQ 289
E P F+ L V L ++ + T I D
Sbjct: 213 QRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD------------ 259
Query: 290 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+ I + +DG L I + D G Y V ++ G ++ +L E+
Sbjct: 260 -EREISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 107 bits (268), Expect = 2e-25
Identities = 46/300 (15%), Positives = 84/300 (28%), Gaps = 79/300 (26%)
Query: 2 GIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
P + W KD + G+ +T LG Y+C+ + G A S
Sbjct: 28 MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSY 87
Query: 53 S-----------------------------RVIARGQQSFLDNDDVPFNRAQ-----GDH 78
++ +GQ F + A+ +
Sbjct: 88 LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK 147
Query: 79 PIFGN---RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV------- 128
IF + G E+ + +++ +D G Y+ + + + L
Sbjct: 148 EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
Query: 129 --------ESQVPDAPAFIRRLHDIAVKVGTRARLLVEI---RSPTEIKCQFDLNNTIPF 177
E P F+ L V L ++ + T I D
Sbjct: 208 KEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD------- 259
Query: 178 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+ I + +DG L I + D G Y V ++ G ++ +L E+
Sbjct: 260 ------EREISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 200 bits (509), Expect = 3e-56
Identities = 53/438 (12%), Positives = 117/438 (26%), Gaps = 62/438 (14%)
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV 371
Y + + + A L + + + + V V L V
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLGCA---LRPQ-----SSGTVYEAAAVEVDVSASITLQV 70
Query: 372 EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
+ +P I W L + Q+ G + + ++ +G + ++
Sbjct: 71 LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV-ILKMTETQAGEYLLFIQSEATNY 129
Query: 432 HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
+S+ +T + +L C +P P + W + + ++
Sbjct: 130 TILFTVSIRNT-----LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK 184
Query: 492 IFALTANPKD-----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP 546
+ K+ C A N +G + I
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL------------------ 226
Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
+ + K+G + C+ + + W + +E + + +
Sbjct: 227 ---NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN 283
Query: 607 GYSIEINYL--EAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
I I + +V D G + C ++ +A V ++ E +
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFINATNSSEDYEID 339
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCV 711
++ F + +P W + P + L S+ G Y
Sbjct: 340 QYEE--FCFSVRFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 712 AKNVMGKAESSTQLTIED 729
A+N + L I
Sbjct: 397 AENDDAQFTKMFTLNIRS 414
Score = 189 bits (482), Expect = 1e-52
Identities = 50/445 (11%), Positives = 111/445 (24%), Gaps = 65/445 (14%)
Query: 505 LGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
L C +N S + + ++ + +L P + + E V+ +
Sbjct: 7 LPVIKCVLINHKNNDSSVGK--SSSYPMVSESPEDLGCALRPQ--SSGTVYEAAAVEVDV 62
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
S L+ V P S W K + + + G+ S+ I + GE+
Sbjct: 63 SASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVV--SMVILKMTETQAGEYL 119
Query: 625 CVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQW 684
S + V + + + + C P P ++W
Sbjct: 120 LFIQSEATNYTILF-TVSI-----RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEW 173
Query: 685 FKDNEELKPGDVYQLTGTSS---------LGSYCCVAKNVMGKAESSTQLTIEDIRNHLS 735
+ + + C A+N +G+ +
Sbjct: 174 VLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL------------ 221
Query: 736 EEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT-VQVSISPEPKVSWFRDDQQVVESDN 794
T + L V E V ++ ++W +++ + E +
Sbjct: 222 -------FTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274
Query: 795 VKILKE-----TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPK 849
++ + + + ++ D + C ++ QS + +
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL---VTIVEKGFINATN 331
Query: 850 FLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH---------KIISGED 900
E+ + + + PQ W +
Sbjct: 332 SSEDYEID--QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQ 389
Query: 901 GTCCLGIYTCEAHNCMGTTSSSAAL 925
G Y A N + L
Sbjct: 390 P----GEYIFHAENDDAQFTKMFTL 410
Score = 168 bits (426), Expect = 3e-45
Identities = 61/474 (12%), Positives = 118/474 (24%), Gaps = 106/474 (22%)
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK 469
+ S+ S + ++E+ C L + + +++L+
Sbjct: 20 NDSSVGKSSSYPMVSESPEDLG---CALRPQSS-----GTVYEAAAVEVDVSASITLQVL 71
Query: 470 VMGIPTPQLIWYKDNKKIKAGDIFALTANPK--------DPSSLGTYTCEAVNCMGAAFS 521
V +W + + F L + G Y +
Sbjct: 72 VDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI 131
Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
V R + K+ L C P P
Sbjct: 132 LFTVSIR---------------------NTLLYTLRRPYFRKMENQDALVCISESVPEP- 169
Query: 582 SIYWY--NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
+ W + +G + ++ L + + +C A + G +
Sbjct: 170 IVEWVLCDSQGESCKEESPAVVKKE-------EKVLHELFGTDIRCCARNELGRECTRLF 222
Query: 640 YVHVLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGDVY 697
+ + +L + G + CK V L W +N+ L+ G+ +
Sbjct: 223 TIDL-------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF 275
Query: 698 QLTGTSSL-------------------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED 738
+++ S+ G Y C + S +TI
Sbjct: 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTI----------- 321
Query: 739 KLLLLTNNKAPKFIEGLKSCQ---ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNV 795
FI S + EEF F+V+ P+ + +W +
Sbjct: 322 --------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-- 371
Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV-PKHYKKP 848
K + E+ A ND Q L + KH+
Sbjct: 372 ---KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHHH 422
Score = 144 bits (365), Expect = 3e-37
Identities = 45/438 (10%), Positives = 104/438 (23%), Gaps = 65/438 (14%)
Query: 28 NPKDPSSLGTYTCEAVNCMGAAFS----TSRVIARGQ-QSFLDNDDVPFN-RAQG----- 76
N +Y + + + +S + + +
Sbjct: 20 NDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNIS 79
Query: 77 ------DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
+ + G + I ++ G Y + +E+ T F +S+
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR- 138
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
+ + R + C + +
Sbjct: 139 ---NTLLYTLRRPYFRKMENQ-----------DALVCISESVPEPIVEWVLCDSQGESCK 184
Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
+ + + G A NE G + L
Sbjct: 185 E----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL-----NQTPQTTLP 235
Query: 251 DIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 307
+ +KVG + + + + + N + + + I
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELE-NKALEEGNYFEMS--TYSTNRTMIR---I 289
Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVG 364
+ V R+D G Y+ ++S S +++ FI + D +
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSEDYEIDQY 341
Query: 365 TRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA 424
V ++ +I+ W + + + +G Y I G + A
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCE--QKGLDNG--YSISKFCNHKHQPGEYIFHA 397
Query: 425 ENAVGRSHCSCELSVLVP 442
EN + L++
Sbjct: 398 ENDDAQFTKMFTLNIRSG 415
Score = 123 bits (309), Expect = 5e-30
Identities = 44/376 (11%), Positives = 95/376 (25%), Gaps = 68/376 (18%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK--------DPSSLGTYTCEAVNCMGAAFSTS 53
+W + + F L + G Y +
Sbjct: 74 APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133
Query: 54 RVIARGQQSF---------LDNDDVPFNRAQGDHPI------FGNRFRAINRDGRTELNI 98
V R + ++N D ++ P + ++ +
Sbjct: 134 TVSIRNTLLYTLRRPYFRKMENQDALVCISES-VPEPIVEWVLCDSQGESCKEESPAVVK 192
Query: 99 R---RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
+ + G A NE G + L + +KVG +
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDL-----NQTPQTTLPQLFLKVGEPLWI 247
Query: 156 LVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 212
+ + + + N + + + I + V R+D
Sbjct: 248 RCKAVHVNHGFGLTWELE-NKALEEGNYFEMS--TYSTNRTMIR---ILFAFVSSVARND 301
Query: 213 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIRSP 269
G Y+ ++S S +++ FI + D + V ++
Sbjct: 302 TGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSEDYEIDQYEEFCFSVRFKAY 353
Query: 270 TEIKCQFDLNN-TIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTAS 328
+I+C + + + P + D ++ + G Y A
Sbjct: 354 PQIRCTWTFSRKSFPCEQKGL---------------DNGYSISKFCNHKHQPGEYIFHAE 398
Query: 329 NESGYSTAKFELSVES 344
N+ T F L++ S
Sbjct: 399 NDDAQFTKMFTLNIRS 414
Score = 121 bits (304), Expect = 3e-29
Identities = 34/259 (13%), Positives = 70/259 (27%), Gaps = 26/259 (10%)
Query: 700 TGTSSLGSYCCVAKNVM----GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
TG L CV N +SS+ + + S ED L ++ +
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSE-----SPEDLGCAL-RPQSSGTVYEA 55
Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
+ + V+ V V W + + + + GV + I +
Sbjct: 56 AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL--QNRGVVSMVILKMTET 113
Query: 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
E+ ++ + +++ + L C VP+
Sbjct: 114 QAGEYLLFIQSEATNY--TILFTVSI---RNTLLYTLRRPYFRKMENQDALVCISESVPE 168
Query: 876 PTLKWFKDGRELKAGDIHKIISGEDGTCCL-----GIYTCEAHNCMGTTSSSAALLGFED 930
P ++W + ++ + L C A N +G + +
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Query: 931 KSQIEKAE----EGKKALI 945
Q + G+ I
Sbjct: 229 TPQTTLPQLFLKVGEPLWI 247
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 197 bits (503), Expect = 2e-55
Identities = 68/441 (15%), Positives = 139/441 (31%), Gaps = 84/441 (19%)
Query: 434 SCELSVLVPKAYKAPFFTKE--LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
S + + P P TK+ + I+ + + +EC+ G P P W ++++
Sbjct: 8 SIQNELTQP-----PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK 62
Query: 492 -------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDD 538
+ + + G Y C A N G A S
Sbjct: 63 DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR--------------- 107
Query: 539 VPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWY-NKEGVVEASD 596
L + ++ V + G L+C P P I+W + +
Sbjct: 108 ---IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP-VIFWMSSSMEPITQDK 163
Query: 597 KYHIMADGLGGYSIEINYLEAVDD-GEWKCVATSSSG----VKQFSAAYVHVLMPKNYRK 651
+ +G + + + D ++ C A K V R
Sbjct: 164 RVSQGHNG----DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERT 219
Query: 652 PRFVESLKA----VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-- 705
P F+ ++ + EC G PTP + W+K +L +L
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRI 279
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS 757
G Y C+A N MG + + ++ AP +++ K+
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISVRVKA------------------APYWLDEPKN 321
Query: 758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQ 817
E+ + + + +P+P V W + + + + + + +++ +
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT--IIFRDTQISSR 379
Query: 818 AEWKCIATNDFGQSITSCFLK 838
A ++C +N+ G + + F+
Sbjct: 380 AVYQCNTSNEHGYLLANAFVS 400
Score = 189 bits (481), Expect = 1e-52
Identities = 78/422 (18%), Positives = 148/422 (35%), Gaps = 53/422 (12%)
Query: 339 ELSVESQVPDAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
+ S+++++ P ++ D V + E + HW RN R K R
Sbjct: 6 DPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPR 65
Query: 398 ---TQHDGNFYFIDL-SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453
+ G G + C A N G + S + + V + + +
Sbjct: 66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL-SNRIRLQV--SKSPLWPKEN 122
Query: 454 LEAILTEQG-TVSLECKV-MGIPTPQLIWYKDNKKIKA----------GDIFALTANPKD 501
L+ ++ ++G ++L+C G+P+P + W + + GD++ +D
Sbjct: 123 LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD 182
Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVK 561
Y+C A + + + + P G A +
Sbjct: 183 --MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTA-------SSQM 233
Query: 562 AKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDG 621
G +LEC P P I WY K+G SDK ++ I + D G
Sbjct: 234 VLRGMDLLLECIASGVPTP-DIAWY-KKGGDLPSDKAKF---ENFNKALRITNVSEEDSG 288
Query: 622 EWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTP 680
E+ C+A++ G + + V V P +++ K ++ G C+ G P P
Sbjct: 289 EYFCLASNKMGSIRHTI-SVRVKAA-----PYWLDEPKNLILAPGEDGRLVCRANGNPKP 342
Query: 681 TLQWFKDNEELK--PGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIE 728
T+QW + E L+ P + + ++ Y C N G ++ +++
Sbjct: 343 TVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Query: 729 DI 730
D+
Sbjct: 403 DV 404
Score = 182 bits (464), Expect = 2e-50
Identities = 71/411 (17%), Positives = 141/411 (34%), Gaps = 61/411 (14%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
P I + ++ + ++EC+ P P S +W + + + G
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAP-SFHWT-RNSRFFNIAKDPRVSMRRRSG 73
Query: 608 YSIEINYLEA----VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFV-ESLKAVM 662
++ I++ +GE++C A + G + + V + P + E+L V+
Sbjct: 74 -TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV-----SKSPLWPKENLDPVV 127
Query: 663 TDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGTS------------SLGSY 708
+G ++ +C G P+P + W + E D G + Y
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDY 187
Query: 709 CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI---EGLKSCQATVNEE 765
C A+ + ++ P F+ S +
Sbjct: 188 SCNARFHFTHTIQQKNPFTLKVLTTRGVAER--------TPSFMYPQGTASSQMVLRGMD 239
Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
S P P ++W++ + SD K L+I + D E+ C+A+
Sbjct: 240 LLLECIASGVPTPDIAWYKKGGDL-PSDKAKF---ENFNKALRITNVSEEDSGEYFCLAS 295
Query: 826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDG 884
N G + +++ P +L+E K + L+ G L C+ G P+PT++W +G
Sbjct: 296 NKMGSIRHTISVRVKAA-----PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNG 350
Query: 885 RELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
L++ + T + +Y C N G ++A +
Sbjct: 351 EPLQSAPPNPNREVAGDT--IIFRDTQISSRAVYQCNTSNEHGYLLANAFV 399
Score = 154 bits (391), Expect = 8e-41
Identities = 75/425 (17%), Positives = 134/425 (31%), Gaps = 55/425 (12%)
Query: 125 ELSVESQVPDAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 183
+ S+++++ P ++ D V + E + + N+ F
Sbjct: 6 DPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSR---FFNIAK 62
Query: 184 DHPIFGNRFRAINRDG--RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
D R R G + + G Y A N+ G + + + QV
Sbjct: 63 DP-----RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN---RIRLQVSK 114
Query: 242 APAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRF 299
+P + + L + V+ G L +C P + + PI ++
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTL----------QCNPPPGLPSPVIFWMSSSMEPITQDKR 164
Query: 300 RAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYST---AKFELSVESQVP---DAPAF 352
+ +G +L V D YS A ++ F L V + P+F
Sbjct: 165 VSQGHNG--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSF 222
Query: 353 IR---RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
+ V G L I WY+ L +K +
Sbjct: 223 MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRI--- 279
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLEC 468
++VS DSG + CLA N +G + + V P++ E + ++ G L C
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA-----PYWLDEPKNLILAPGEDGRLVC 334
Query: 469 KVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD--------PSSLGTYTCEAVNCMGAAF 520
+ G P P + W + + +++ D SS Y C N G
Sbjct: 335 RANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLL 394
Query: 521 STSRV 525
+ + V
Sbjct: 395 ANAFV 399
Score = 136 bits (343), Expect = 2e-34
Identities = 64/380 (16%), Positives = 120/380 (31%), Gaps = 37/380 (9%)
Query: 67 DDVPFNRAQGDHPIFGNRFRAINRDG--RTELNIRRVRRDDGGRYSVTASNESGYSTAKF 124
+ FN A+ R R G + + G Y A N+ G + +
Sbjct: 54 NSRFFNIAKDP------RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN- 106
Query: 125 ELSVESQVPDAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQ 182
+ QV +P + + L + V+ G L +C P + +
Sbjct: 107 --RIRLQVSKSPLWPKENLDPVVVQEGAPLTL----------QCNPPPGLPSPVIFWMSS 154
Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQVPD 241
PI ++ + +G +L V D YS A T + + +V
Sbjct: 155 SMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNARFHFT-HTIQQKNPFTLKVLT 211
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
R GT + +V ++C T ++ + + ++ +
Sbjct: 212 TRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY-KKGGDLPSDKAKF 270
Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 361
N + L I V +D G Y ASN+ G + V++ AP ++ ++ +
Sbjct: 271 ENFNKA--LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----APYWLDEPKNLIL 324
Query: 362 KVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI-YRTQHDGNFYFIDLSSVSLFDSGRW 420
G RL+ + + W N L+ + G+ + +
Sbjct: 325 APGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIF--RDTQISSRAVY 382
Query: 421 TCLAENAVGRSHCSCELSVL 440
C N G + +SVL
Sbjct: 383 QCNTSNEHGYLLANAFVSVL 402
Score = 124 bits (314), Expect = 9e-31
Identities = 65/391 (16%), Positives = 110/391 (28%), Gaps = 78/391 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGD-------------IFALTANPKDPSSLGTYTCEAVNCMGA 48
G P P W ++++ + + + G Y C A N G
Sbjct: 43 GNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGT 102
Query: 49 AFSTS-RVIARGQQSFLDNDDVPFNRAQGD------HPIFG----------NRFRAINRD 91
A S R+ + + P +G +P G + I +D
Sbjct: 103 ALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD 162
Query: 92 GRTE------LNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 144
R L V D YS A T + + +V R
Sbjct: 163 KRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFT-HTIQQKNPFTLKVLTTRGVAERTPS 221
Query: 145 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 204
GT + +V ++C T ++ + + ++ + N + L
Sbjct: 222 FMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY-KKGGDLPSDKAKFENFNKA--LR 278
Query: 205 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV 264
I V +D G Y ASN+ G + V++ AP ++ ++ + G RL
Sbjct: 279 ITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----APYWLDEPKNLILAPGEDGRL-- 332
Query: 265 EIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNRFRAINRDGRTELNIR 313
C+ A G+ P+ + R
Sbjct: 333 --------VCR------------ANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFR 372
Query: 314 RVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+ Y SNE GY A +SV
Sbjct: 373 DTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 100 bits (250), Expect = 2e-22
Identities = 41/241 (17%), Positives = 77/241 (31%), Gaps = 25/241 (10%)
Query: 738 DKLLLLTNNKAPKFI-EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK 796
D + + P + K + + +P P W R+ + + + +
Sbjct: 6 DPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPR 65
Query: 797 ILKETLG---VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE 853
+ V + + E++C A N FG + S ++L V K P + +E
Sbjct: 66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFG-TALSNRIRLQV---SKSPLWPKE 121
Query: 854 LKAVLS--EGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----- 905
+ EG + L+C G+P P + W E D ++ G +G L
Sbjct: 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD-KRVSQGHNGD--LYFSNV 178
Query: 906 ------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGT 959
Y+C A T + + AE + + + S + G
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM 238
Query: 960 S 960
Sbjct: 239 D 239
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 197 bits (501), Expect = 2e-55
Identities = 73/411 (17%), Positives = 124/411 (30%), Gaps = 59/411 (14%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
P+ + V + +LEC + W K+G + +
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWK-KDGKSYNWQEHNAALR--KDEG 62
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL- 667
S+ +A D+G ++C A + +GV +G
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYL-----IASPAKTHEKTPIEGRP 117
Query: 668 VSFECKVV-GFPTPTLQWFKDNEELKP----------------GDVY----QLTGTSSLG 706
+C + +P P + W K P G++Y S +
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 707 SYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
Y C AKN E + I+ + S P K A +
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG--------EPVPQYVSKDMMAKAGDV 229
Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET-LGVCHLKIHALEVADQAEWKCIA 824
+P ++F++ + V + +I + L D+ + C
Sbjct: 230 TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV 289
Query: 825 TNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVL--SEGGAVNLECKVIGVPQPTLKWFK 882
N G LKL V PK+ ++ + V+ +G V + CKV G+P P + W
Sbjct: 290 DNGVG-KPQKHSLKLTV---VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH 345
Query: 883 DGRELKAGDIHK-----IISG---EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+ + L G +I G D G Y C A N G +
Sbjct: 346 NAKPLSGGRATVTDSGLVIKGVKNGDK----GYYGCRATNEHGDKYFETLV 392
Score = 189 bits (481), Expect = 9e-53
Identities = 76/446 (17%), Positives = 130/446 (29%), Gaps = 93/446 (20%)
Query: 437 LSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFA 494
L V P + +L + LEC + G W KD K + A
Sbjct: 1 LPVDKY-----PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA 55
Query: 495 LTANPK--------DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP 546
+ S G Y C A G A +SRVI S
Sbjct: 56 ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVA--SSRVI----------------SFRK 97
Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWY-------NKEGVVEASDKY 598
+ G L+C + P P I W V + +
Sbjct: 98 TYL-IASPAKTHEKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRI 155
Query: 599 HIMADG-LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM-----PKNYRKP 652
DG L Y + + D ++ C A +++ ++ + +P
Sbjct: 156 TAGPDGNL--YFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEP 213
Query: 653 RFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-----YQLTGTSSL- 705
K +M G + C P +FK+ +++ + T L
Sbjct: 214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL 273
Query: 706 ---------GSYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
G Y C N +GK + S +LT+ APK+ +
Sbjct: 274 FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS------------------APKYEQKP 315
Query: 756 KSCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
+ ++ +V+ P P V W + + + + L I ++
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSGL-----VIKGVKN 369
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLN 840
D+ + C ATN+ G +++N
Sbjct: 370 GDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 162 bits (410), Expect = 3e-43
Identities = 72/417 (17%), Positives = 127/417 (30%), Gaps = 50/417 (11%)
Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIF 188
V P + ++ + L I + + D
Sbjct: 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKD-------------GKSYN 49
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 248
A R L R + D G Y A +G ++++ + + A +
Sbjct: 50 WQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR---VISFRKTYLIASPAK 106
Query: 249 LHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD 305
H+ G +L + + I + L+ P D F R D
Sbjct: 107 THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADP-----NADVTDFDRRIT-AGPD 160
Query: 306 GRTE-LNIRRVRRDDGGRYSVTASNESG-------YSTAKFELSVESQVPDAPAFIRRLH 357
G + + D +Y TA N + K S P
Sbjct: 161 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL--SSVSLF 415
D+ K G + S ++++N + + N R L +
Sbjct: 221 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 280
Query: 416 DSGRWTCLAENAVGR-SHCSCELSVLVPKAYKAPFFTKELEAILT--EQGTVSLECKVMG 472
D G +TC +N VG+ S +L+V+ P + ++ E ++ + V++ CKV G
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVSA-----PKYEQKPEKVIVVKQGQDVTIPCKVTG 335
Query: 473 IPTPQLIWYKDNKKIKAGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
+P P ++W + K + G L G Y C A N G + + V
Sbjct: 336 LPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 392
Score = 142 bits (359), Expect = 1e-36
Identities = 44/316 (13%), Positives = 84/316 (26%), Gaps = 56/316 (17%)
Query: 650 RKPRFVESLKAVMTDDGL-VSFECKVVGFPTPT-LQWFKDNEELKPGD--VYQLTGTSSL 705
+ P + V+ + EC + G W KD + + SL
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 64
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
G Y C A+ G A S +
Sbjct: 65 VFLRPQASDEGHYQCFAETPAGVASSRV-----------------ISFRKTYLIASPAKT 107
Query: 756 KSCQATVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVCH------LK 808
F+ + + P+P ++W + + +V +
Sbjct: 108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI 167
Query: 809 IHALEVADQAEWKCIATNDFGQSI-TSCFLKLNV-----PKHYKKPKFLEELK-AVLSEG 861
+ +V+D ++ C A N ++ + +P K + G
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTC 910
+ C P +FK+G+++ +I + G+YTC
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287
Query: 911 EAHNCMGTTSSSAALL 926
E N +G + L
Sbjct: 288 EVDNGVGKPQKHSLKL 303
Score = 136 bits (344), Expect = 1e-34
Identities = 64/379 (16%), Positives = 111/379 (29%), Gaps = 50/379 (13%)
Query: 82 GNRFRAINRDGRTE-----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
G + + L R + D G Y A +G ++++ + +
Sbjct: 45 GKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR---VISFRKTYLI 101
Query: 137 AFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
A + H+ G +L + + I + L+ P D F R
Sbjct: 102 ASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADP-----NADVTDFDRRIT 156
Query: 194 AINRDGRTE-LNIRRVRRDDGGRYSVTASNESG-------YSTAKFELSVESQVPDAPAF 245
DG + + D +Y TA N + K S P
Sbjct: 157 -AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVP 215
Query: 246 IRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 303
D+ K G + +P + + + +R N
Sbjct: 216 QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN-GKDVNGNPE---------DRITRHN 265
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLHD-IAV 361
R L + +D G Y+ N G +L+V S AP + ++ I V
Sbjct: 266 RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----APKYEQKPEKVIVV 321
Query: 362 KVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRW 420
K G + ++ P + W N + L + T D + + V D G +
Sbjct: 322 KQGQDVTIPCKVTGLPA-PNVVWSHNAKPLSGGR--ATVTDSG---LVIKGVKNGDKGYY 375
Query: 421 TCLAENAVGRSHCSCELSV 439
C A N G + + V
Sbjct: 376 GCRATNEHGDKYFETLVQV 394
Score = 103 bits (259), Expect = 1e-23
Identities = 66/404 (16%), Positives = 98/404 (24%), Gaps = 104/404 (25%)
Query: 2 GIPTPQLI-WYKDNKKIKAGDIFALTANPK--------DPSSLGTYTCEAVNCMGAAFS- 51
G W KD K + A + S G Y C A G A S
Sbjct: 32 GNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR 91
Query: 52 TSRVIARGQQSFLD---------NDDVPFN---------------------RAQGDHPIF 81
+ + D F
Sbjct: 92 VISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDF 151
Query: 82 GNRFRAINRDGRTE-LNIRRVRRDDGGRYSVTASNESG-------YSTAKFELSVESQVP 133
R DG + + D +Y TA N + K S
Sbjct: 152 DRRIT-AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK 210
Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
P D+ K G + +P + + + +R
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN-GKDVNGNPE---------DR 260
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLH 250
NR L + +D G Y+ N G +L+V S AP + ++
Sbjct: 261 ITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----APKYEQKPE 316
Query: 251 D-IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNR 298
I VK G + C+ G P+ G R
Sbjct: 317 KVIVVKQGQDVTI----------PCK------------VTGLPAPNVVWSHNAKPLSGGR 354
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+ G L I+ V+ D G Y A+NE G + + V
Sbjct: 355 AT-VTDSG---LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 72.6 bits (178), Expect = 2e-13
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 19/123 (15%)
Query: 839 LNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKII 896
L V K P ++ + E LEC + G Q W KDG+ + + +
Sbjct: 1 LPVDK---YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL 57
Query: 897 SGEDGTCCL--------GIYTCEAHNCMGTTSSSAALL------GFEDKSQIEKAEEGKK 942
++G+ G Y C A G SS K+ + EG+
Sbjct: 58 RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRP 117
Query: 943 ALI 945
+
Sbjct: 118 FQL 120
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 193 bits (493), Expect = 2e-55
Identities = 68/299 (22%), Positives = 114/299 (38%), Gaps = 41/299 (13%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL 705
PRF++ K + G + SF C+ G P P + W K +++ + + L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 706 -----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
Y CVA+N +G+ +LT+ + P G
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ-----------LPSGFPNIDMG 114
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
+ S +P+P+++WF+D V S + +K+ L L+I + E
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEE 173
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGV 873
DQ +++C+ATN G S L V P+F + GG VN+ C +G
Sbjct: 174 TDQGKYECVATNSAG-VRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGS 232
Query: 874 PQPTLKWFKDGRELKAGDIHKIISG-------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
P P +KW + +L D + +D YTC A + +G + A +
Sbjct: 233 PMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDS----ANYTCVAMSSLGVIEAVAQI 287
Score = 179 bits (455), Expect = 3e-50
Identities = 71/305 (23%), Positives = 122/305 (40%), Gaps = 39/305 (12%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
+ P F KE + + G S C+ G P P++ W K KK+ + + + +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 505 L-----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
L Y C A N +G +++ V +P G P
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLT------------VLREDQLPSGF-PNI 111
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
+ + +A + C P P I W+ K+ + + L +++I
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGNPDP-EITWF-KDFLPVDPSASNGRIKQLRSGALQIE 169
Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK-AVMTDDGLVSFEC 672
E D G+++CVAT+S+GV+ S A ++V + PRF + G V+ C
Sbjct: 170 SSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV--APRFSILPMSHEIMPGGNVNITC 227
Query: 673 KVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------GSYCCVAKNVMGKAESSTQ 724
VG P P ++W + E+L P D + G + L +Y CVA + +G E+ Q
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDDMPV-GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQ 286
Query: 725 LTIED 729
+T++
Sbjct: 287 ITVKS 291
Score = 163 bits (413), Expect = 1e-44
Identities = 66/309 (21%), Positives = 100/309 (32%), Gaps = 38/309 (12%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
P FIKE ++ G A CQ P P + W K V + I D G
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKP-RVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 610 IEINYLEAVDD-GEWKCVATSSSGVKQFSAA-YVHVLMPKNYRKPRFVESLKAVMTDDG- 666
+ I L D ++CVA +S G A V P + + +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGDV---YQLTGTSSL----------GSYCCVAK 713
+ C G P P + WFKD + P + + +L G Y CVA
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
N G SS L + N AP+F S + T
Sbjct: 185 NSAGVRYSSPA--------------NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAV 230
Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
SP P V W + + + D++ + + + +V D A + C+A + G
Sbjct: 231 GSPMPYVKWMQGAEDLTPEDDMPVGR-------NVLELTDVKDSANYTCVAMSSLGVIEA 283
Query: 834 SCFLKLNVP 842
+ +
Sbjct: 284 VAQITVKSL 292
Score = 148 bits (376), Expect = 9e-40
Identities = 59/309 (19%), Positives = 99/309 (32%), Gaps = 50/309 (16%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD---------- 291
P FI+ D G A CQ A GD
Sbjct: 6 PPRFIKEPKDQIGVSGGVASF----------VCQ------------ATGDPKPRVTWNKK 43
Query: 292 -HPIFGNRFRAI--NRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVES--- 344
+ RF I + L I+ +R D Y A N G T +L+V
Sbjct: 44 GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ 103
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE---NKIYRTQHD 401
P V+ A +L + +I W+++ ++ N +
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS 163
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
G S D G++ C+A N+ G S ++ V AP F+ +
Sbjct: 164 GALQI---ESSEETDQGKYECVATNSAG-VRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219
Query: 462 G-TVSLECKVMGIPTPQLIWYKDNKKIKAGD---IFALTANPKDPSSLGTYTCEAVNCMG 517
G V++ C +G P P + W + + + D + D YTC A++ +G
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLG 279
Query: 518 AAFSTSRVI 526
+ +++
Sbjct: 280 VIEAVAQIT 288
Score = 129 bits (325), Expect = 5e-33
Identities = 64/345 (18%), Positives = 96/345 (27%), Gaps = 74/345 (21%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD---------- 184
P FI+ D G A CQ A GD
Sbjct: 6 PPRFIKEPKDQIGVSGGVASF----------VCQ------------ATGDPKPRVTWNKK 43
Query: 185 -HPIFGNRFRAI--NRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVES--- 237
+ RF I + L I+ +R D Y A N G T +L+V
Sbjct: 44 GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ 103
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 295
P V+ A +L +P EI D P+
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD-------------FLPVD 150
Query: 296 -GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY---STAKFELSVESQVPDAPA 351
I + L I D G+Y A+N +G S A + V++ AP
Sbjct: 151 PSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV---APR 207
Query: 352 FIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLS 410
F + G + SP + W + L N L
Sbjct: 208 FSILPMSHEIMPGGNVNITCVAVGSPM-PYVKWMQGAEDLTPED--DMPVGRNV----LE 260
Query: 411 SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE 455
+ DS +TC+A +++G +++V P +
Sbjct: 261 LTDVKDSANYTCVAMSSLGVIEAVAQITVKSL-----PKAGTKHH 300
Score = 126 bits (317), Expect = 5e-32
Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 15/197 (7%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
T + P+FI+ K F Q + P+P+V+W + ++V I +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 804 VCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNVPKHYKK--PKFLEELK-AVLS 859
L+I L D+ ++C+A N G+ L + P + V+
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYT 909
+ C G P P + WFKD + + I + + L G Y
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK-QLRSGALQIESSEETDQGKYE 180
Query: 910 CEAHNCMGTTSSSAALL 926
C A N G SS A L
Sbjct: 181 CVATNSAGVRYSSPANL 197
Score = 103 bits (258), Expect = 4e-24
Identities = 50/300 (16%), Positives = 79/300 (26%), Gaps = 60/300 (20%)
Query: 77 DHPIFGNRFRAI--NRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVES--- 130
+ RF I + L I+ +R D Y A N G T +L+V
Sbjct: 44 GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ 103
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
P V+ A +L +P EI D P+
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD-------------FLPVD 150
Query: 189 -GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY---STAKFELSVESQVPDAPA 244
I + L I D G+Y A+N +G S A + V++ AP
Sbjct: 151 PSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV---APR 207
Query: 245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF------GNR 298
F + G + C A G +
Sbjct: 208 FSILPMSHEIMPGGNVNI----------TC------------VAVGSPMPYVKWMQGAED 245
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
+ + D Y+ A + G A +++V+ P + H
Sbjct: 246 LTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK----SLPKAGTKHHH 301
Score = 96.8 bits (241), Expect = 6e-22
Identities = 44/299 (14%), Positives = 77/299 (25%), Gaps = 78/299 (26%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVNCMGAAF 50
G P P++ W K KK+ + + + + L Y C A N +G
Sbjct: 32 GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEIT 91
Query: 51 STSRV-------IARGQQSFL---------DNDDVPFN-RAQG-----------DHPIF- 81
+++ + G + A G P+
Sbjct: 92 VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY---STAKFELSVESQVPDAPAF 138
I + L I D G+Y A+N +G S A + V++ AP F
Sbjct: 152 SASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV---APRF 208
Query: 139 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF------GNRF 192
+ G + C A G +
Sbjct: 209 SILPMSHEIMPGGNVNI----------TC------------VAVGSPMPYVKWMQGAEDL 246
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
+ + D Y+ A + G A +++V+ P + H
Sbjct: 247 TPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK----SLPKAGTKHHH 301
Score = 79.1 bits (195), Expect = 5e-16
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 21/128 (16%)
Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
+ P+F++E K + GG + C+ G P+P + W K G+++ + I E
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 905 L-----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKAL--IVKDPSL 951
L +Y C A N +G + A L + + ++ I P L
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKL-------TVLREDQLPSGFPNIDMGPQL 117
Query: 952 STIQEEGT 959
++ T
Sbjct: 118 KVVERTRT 125
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 193 bits (493), Expect = 2e-54
Identities = 80/425 (18%), Positives = 134/425 (31%), Gaps = 82/425 (19%)
Query: 447 APFFTKELEAILTEQG----TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT------ 496
P F ++ L +G V+L C+ P W + ++K G
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 497 --ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
+NP G+Y C A N G S SL
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREA------------------SLRFGFLQEFSA 105
Query: 555 KEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEG---VVEASDKYHIMADGLGGYSI 610
+E + VK G + C P S W E + ++ G ++
Sbjct: 106 EERDPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPNFIPADGRRFVSQTTG----NL 160
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAA------YVHVLMPKNYRKPRFVESLKAVMTD 664
I EA D G + C ATS S + + Y +
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220
Query: 665 DG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAK 713
G +V+ EC G P P ++W K + L+ L G+Y C A+
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQNVDFEDEGTYECEAE 277
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
N+ G+ ++ I P +++ + +A + + +++ S
Sbjct: 278 NIKGRDTYQGRIIIHA------------------QPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
P P V W RD Q + + +++ L + L + D ++C+A N G
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGGEL-----RFSKLVLEDSGMYQCVAENKHGTVYA 374
Query: 834 SCFLK 838
S L
Sbjct: 375 SAELT 379
Score = 180 bits (457), Expect = 1e-49
Identities = 79/408 (19%), Positives = 138/408 (33%), Gaps = 58/408 (14%)
Query: 349 APAFIRRLHDIAVKVGT---RARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNF 404
P F + G+ + L R+ W N +L+ R G+
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVG--RSHCSCELSVLVPKAYKAPFFTKELEAILTEQG 462
+ V D+G + C+A NA G S + + F +E + + +G
Sbjct: 64 VIS--NPVKAKDAGSYQCVATNARGTVVSR-----EASLRFGFLQEFSAEERDPVKITEG 116
Query: 463 -TVSLECKV-MGIPTPQLIWYKDNKKI---KAGDIFALTANPK------DPSSLGTYTCE 511
V C P W + G F + S LG Y+C
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCF 176
Query: 512 AVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILE 571
A + + T V ++ Q L +D I K + A G LE
Sbjct: 177 ATSHIDFI--TKSVFSKFSQLSLAAEDAR------QYAPSIKAKFPADTYALTGQMVTLE 228
Query: 572 CQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSS 631
C P P I W K + + ++ + I ++ D+G ++C A +
Sbjct: 229 CFAFGNPVP-QIKWR-KLD--GSQTSKWLSSEP----LLHIQNVDFEDEGTYECEAENIK 280
Query: 632 GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEE 690
G + + + P +++ + D G + + C G P P ++W +D +
Sbjct: 281 G-RDTYQGRIIIHAQ-----PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP 334
Query: 691 LKPGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIE 728
L + +++G L G Y CVA+N G +S +LT++
Sbjct: 335 LASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 173 bits (440), Expect = 2e-47
Identities = 74/406 (18%), Positives = 136/406 (33%), Gaps = 61/406 (15%)
Query: 550 APIFIKEVENVKAKIGTS---AILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMADG 604
P+F ++ + G++ L C+ P + W G + D + + G
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWK-MNGTELKMGPDSRYRLVAG 61
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTD 664
I N ++A D G ++CVAT++ G A + + + E V
Sbjct: 62 --DLVI-SNPVKAKDAGSYQCVATNARGTVVSREASLRF----GFLQEFSAEERDPVKIT 114
Query: 665 DGL-VSFECKVV-GFPTPTLQWFKDNEELKP---GDVYQLTGTSSL----------GSYC 709
+G V F C +P + +W + G + T +L G+Y
Sbjct: 115 EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYS 174
Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
C A + + S + + + A +
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDA------RQYAPSIKAKFPADTYALTGQMVTLE 228
Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
+P P++ W + D K L I ++ D+ ++C A N G
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQ-------TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG 281
Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
+ + ++ P +L+ + G + C G P+P ++W +DG+ L
Sbjct: 282 RDTYQGRIIIHAQ-----PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA 336
Query: 889 AGDIHKIISG---------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+ + ++ G ED G+Y C A N GT +SA L
Sbjct: 337 SQNRIEVSGGELRFSKLVLEDS----GMYQCVAENKHGTVYASAEL 378
Score = 144 bits (364), Expect = 2e-37
Identities = 64/410 (15%), Positives = 117/410 (28%), Gaps = 54/410 (13%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
P F + G+ + C+ N + ++ G G R
Sbjct: 4 GPVFEEQPAHTLFPEGSA-------EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY 56
Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR-LHDIA 253
G + V+ D G Y A+N G ++ + F +
Sbjct: 57 RLVAG-DLVISNPVKAKDAGSYQCVATNARGTVVSR---EASLRFGFLQEFSAEERDPVK 112
Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNN---TIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
+ G C + + + + R G L
Sbjct: 113 ITEGWGVMF----------TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NL 160
Query: 311 NIRRVRRDDGGRYSVTASNESGYST-------AKFELSVESQVPDAPAFI-RRLHDIAVK 362
I + D G YS A++ + T ++ L+ E AP+ + D
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220
Query: 363 VGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWT 421
G L +P +I W + D + + +V D G +
Sbjct: 221 TGQMVTLECFAFGNPV-PQIKWRKLDGSQ---TSKWLSSEPLLHI---QNVDFEDEGTYE 273
Query: 422 CLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIW 480
C AEN GR + + P + + + G + C G P P + W
Sbjct: 274 CEAENIKGRDTYQGRIIIHAQ-----PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328
Query: 481 YKDNKKIKAGDIF-----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
+D + + + + L + G Y C A N G ++++ +
Sbjct: 329 LRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Score = 129 bits (327), Expect = 1e-32
Identities = 67/393 (17%), Positives = 113/393 (28%), Gaps = 74/393 (18%)
Query: 67 DDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 126
+ R G + V+ D G Y A+N G ++
Sbjct: 44 NGTELKMGPDS--------RYRLVAG-DLVISNPVKAKDAGSYQCVATNARGTVVSR--- 91
Query: 127 SVESQVPDAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNN---TIPFSFRAQ 182
+ F + + G C + + +
Sbjct: 92 EASLRFGFLQEFSAEERDPVKITEGWGVMF----------TCSPPPHYPALSYRWLLNEF 141
Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST-------AKFELSV 235
+ R G L I + D G YS A++ + T ++ L+
Sbjct: 142 PNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 199
Query: 236 ESQVPDAPAFI-RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-HP 293
E AP+ + D G L +C A G+ P
Sbjct: 200 EDARQYAPSIKAKFPADTYALTGQMVTL----------ECF------------AFGNPVP 237
Query: 294 IF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
+ L+I+ V +D G Y A N G T + + + +
Sbjct: 238 QIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA---- 293
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
P ++ + D +G+ R P + W R+ + L R + G
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPR-PAVRWLRDGQPLASQN--RIEVSGGELRF 350
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
S + L DSG + C+AEN G + S EL+V
Sbjct: 351 --SKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 122 bits (308), Expect = 4e-30
Identities = 71/401 (17%), Positives = 114/401 (28%), Gaps = 109/401 (27%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTCEAVNCMGAAFS-T 52
P W + ++K G +NP G+Y C A N G S
Sbjct: 33 ANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSRE 92
Query: 53 SRVIARGQQSFLD----------NDDVPFN-RAQGDHP------IFGNRFRAINRDGR-- 93
+ + Q F V F +P + I DGR
Sbjct: 93 ASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRF 152
Query: 94 -----TELNIRRVRRDDGGRYSVTASNESGYST-------AKFELSVESQVPDAPAFI-R 140
L I + D G YS A++ + T ++ L+ E AP+ +
Sbjct: 153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 141 RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-HPIF-----GNRFRA 194
D G L +C A G+ P +
Sbjct: 213 FPADTYALTGQMVTL----------ECF------------AFGNPVPQIKWRKLDGSQTS 250
Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 254
L+I+ V +D G Y A N G T + + + + P ++ + D
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA----QPDWLDVITDTEA 306
Query: 255 KVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNRFRAIN 303
+G+ R C A G P+ ++
Sbjct: 307 DIGSDLRW----------SCV------------ASGKPRPAVRWLRDGQPLASQNRIEVS 344
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
EL ++ +D G Y A N+ G A EL+V++
Sbjct: 345 GG---ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 93.4 bits (232), Expect = 3e-20
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 29/228 (12%)
Query: 748 APKFIEGLKSC---QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE--TL 802
P F E + + E+ T + +P W + ++ + + L
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS--E 860
+ + ++ D ++C+ATN G ++ S L +F E + + E
Sbjct: 64 ----VISNPVKAKDAGSYQCVATNARG-TVVSREASLRFGF---LQEFSAEERDPVKITE 115
Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGREL-KAGDIHKIISGEDGTCCL----------GIY 908
G V C P + +W + D + +S G L G Y
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN--LYIAKTEASDLGNY 173
Query: 909 TCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQE 956
+C A + + + S + E A + ++ K P+ +
Sbjct: 174 SCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 188 bits (478), Expect = 2e-52
Identities = 80/438 (18%), Positives = 134/438 (30%), Gaps = 96/438 (21%)
Query: 446 KAPFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDI 492
K P F KE + +ECK G P P++IW + + G +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 493 FALTANPKDPSSL---GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
+D Y C A N G+ S +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD---VHVRAVVA--------------- 103
Query: 550 APIFIKEVENVKAKIGTSAILECQV--LVPPWPRSIYWYNKEG-----VVEASDKYHIMA 602
+ +V G SA+++C + V + + W+ E E KY ++
Sbjct: 104 -QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 603 DGLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFSAAYVHVLM---PKNYRKPRFVESL 658
G + I + D ++C + +A L+ P + PR +
Sbjct: 163 SG----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV 218
Query: 659 KAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------- 705
+ + +S C GFP P+ +W+K E L
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Query: 706 ----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT 761
G Y CV N +G T LT+ +
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTA------------------PLSAKIDPPTQTVD 320
Query: 762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWK 821
FT Q + +P VSW +D + + S++V L+I +++ D+ ++
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQ 369
Query: 822 CIATNDFGQSITSCFLKL 839
C ND + S LKL
Sbjct: 370 CFVRNDRESAEASAELKL 387
Score = 168 bits (428), Expect = 9e-46
Identities = 74/411 (18%), Positives = 128/411 (31%), Gaps = 63/411 (15%)
Query: 550 APIFIKE-VENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLG 606
P+F+KE + T A +EC+ P P I W + V + I +DG
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDG-- 59
Query: 607 GYSIEI------NYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
+ +Y + V + C+A + G +V ++ + +
Sbjct: 60 --KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA-----QYYEADVNK 112
Query: 661 VMTDDG-LVSFECKV---VGFPTPTLQWFKDNEELKPGDV-----YQLTGTSSL------ 705
G +C + V + W D EE Y + + L
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172
Query: 706 -----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ- 759
SY C K+ + T+L+ R ++E ++ AP+ ++
Sbjct: 173 PEDGYKSYQCRTKHRLT---GETRLSATKGRLVITEP------ISSSAPRTPALVQKPLE 223
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQA 818
V P P W++ + V + + L I V D
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPT 877
++ C+ N G L + P + + G C+ G P T
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 338
Query: 878 LKWFKDGRELKAGDIHKIISG---EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+ W KDG+ + + I ED G+Y C N + +SA L
Sbjct: 339 VSWMKDGKAIGHSESVLRIESVKKEDK----GMYQCFVRNDRESAEASAEL 385
Score = 136 bits (345), Expect = 7e-35
Identities = 76/420 (18%), Positives = 130/420 (30%), Gaps = 66/420 (15%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFR 193
P F++ + R+ + EI+C+ N R+ G R
Sbjct: 3 GPVFLKEPTN---------RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR 53
Query: 194 AINRDGRTELNIRRVRRDDG------GRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
I+ DG +L R +D Y+ A N+ G ++ V + A +
Sbjct: 54 QISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR---DVHVRAVVAQYYEA 108
Query: 248 RLHDIAVKVGTRARLLVEIRS-----PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
++ V G A + I S + D + ++ +
Sbjct: 109 DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-------EEENYFPGAEYDGKYL-V 160
Query: 303 NRDGRTELNIRRVRRDDG-GRYSVTASNESGYST---AKFELSV-----ESQVPDAPAFI 353
G EL+IR V +DG Y + T A V S P PA +
Sbjct: 161 LPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV 218
Query: 354 RRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL--S 410
++ + + V LL + P WY+ + L
Sbjct: 219 QK--PLELMVAHTISLLCPAQGFPA-PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIK 275
Query: 411 SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECK 469
+ DSG++ C+ N+VG L+V P + + G C+
Sbjct: 276 DAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQ 330
Query: 470 VMGIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
G P + W KD K I + I ++ G Y C N +A +++ +
Sbjct: 331 YTGNPIKTVSWMKDGKAIGHSESVLRIESVK-----KEDKGMYQCFVRNDRESAEASAEL 385
Score = 114 bits (286), Expect = 3e-27
Identities = 63/380 (16%), Positives = 116/380 (30%), Gaps = 63/380 (16%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDG------GRYSVTASNESGYSTAKFELSVESQVPDA 135
R I+ DG +L R +D Y+ A N+ G ++ V + A
Sbjct: 49 VPGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR---DVHVRAVVA 103
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRS-----PTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
+ ++ V G A + I S + D +
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-------EEENYFPGAEYDG 156
Query: 191 RFRAINRDGRTELNIRRVRRDDG-GRYSVTASNESGYST---AKFELSV-----ESQVPD 241
++ + G EL+IR V +DG Y + T A V S P
Sbjct: 157 KYL-VLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPR 213
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
PA +++ + + V LL + P + + T + +R
Sbjct: 214 TPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR------KQAVVLNDRV 265
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
+ ++ L I+ +D G+Y +N G + + L+V + +
Sbjct: 266 KQVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----PLSAKIDPPTQ 317
Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGR 419
V G A + + W ++ + + + + SV D G
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRI---ESVKKEDKGM 367
Query: 420 WTCLAENAVGRSHCSCELSV 439
+ C N + S EL +
Sbjct: 368 YQCFVRNDRESAEASAELKL 387
Score = 98.9 bits (246), Expect = 4e-22
Identities = 67/402 (16%), Positives = 113/402 (28%), Gaps = 105/402 (26%)
Query: 2 GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSL---GTYTCEAVNCMG 47
G P P++IW + + G + +D Y C A N G
Sbjct: 30 GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 89
Query: 48 AAFS-----------------TSRVIARGQQSFLD-------NDDVPF------NRAQGD 77
+ S + RG + + D V
Sbjct: 90 SIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 149
Query: 78 HPIFGNRFRAINRDGRTELNIRRVRRDDG-GRYSVTASNESGYST---AKFELSV----- 128
+ + G EL+IR V +DG Y + T A V
Sbjct: 150 PGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI 207
Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHP 186
S P PA +++ + + V LL + P + + T
Sbjct: 208 SSSAPRTPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR------KQAV 259
Query: 187 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
+ +R + ++ L I+ +D G+Y +N G + + L+V + +
Sbjct: 260 VLNDRVKQVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----PLSAK 311
Query: 247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP--IF----GNRFR 300
V G A CQ G+ + G +
Sbjct: 312 IDPPTQTVDFGRPAVF----------TCQ------------YTGNPIKTVSWMKDG---K 346
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
AI L I V+++D G Y N+ + A EL +
Sbjct: 347 AIGHSESV-LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 64.2 bits (156), Expect = 9e-11
Identities = 26/122 (21%), Positives = 36/122 (29%), Gaps = 22/122 (18%)
Query: 846 KKPKFLEELKAVL--SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
K P FL+E + S +ECK G P P + W + DG
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 904 CL--------------GIYTCEAHNCMGTTSSSAALL------GFEDKSQIEKAEEGKKA 943
+Y C A N G+ S + +E E G A
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121
Query: 944 LI 945
+I
Sbjct: 122 VI 123
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 171 bits (434), Expect = 7e-49
Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 12/190 (6%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD-NVKILKETLGVCH 806
AP F E L++ +V+ P+P V W+R ++++ +I + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVN 865
L I ++ D ++ ATN G + L++ VP PK LE + AV G V+
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
++ G P P + W K + +++I T + G Y A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 916 MGTTSSSAAL 925
G + L
Sbjct: 184 FGIDQKTVEL 193
Score = 148 bits (376), Expect = 5e-41
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLG 606
AP F +E+ N+ + ++A L C+V P P + WY + ++ KY I G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
+ + I + D ++ AT+ G +A + V +P P+ +E + AV G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTA-SLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 667 -LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------------GSYCCV 711
+VS + G P P + W K + + YQ+ T S G Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 712 AKNVMGKAESSTQLTIED 729
AKN G + + +L + D
Sbjct: 180 AKNRFGIDQKTVELDVAD 197
Score = 145 bits (368), Expect = 6e-40
Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 19/194 (9%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEEN--KIYRTQHDGN 403
AP F L ++ V+ + A L+ ++ P + WYR +++ + K + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPI---VKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG- 462
++ + ++SV+ D+ + A N G + L V VP P + + A+ +G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEA 512
VS++ G P P + W K I + + S + G Y A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 513 VNCMGAAFSTSRVI 526
N G T +
Sbjct: 181 KNRFGIDQKTVELD 194
Score = 139 bits (353), Expect = 6e-38
Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 29/202 (14%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL 705
P F E L+ + + CKV G P P ++W++ +E+ G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
Y A N G + L +E PK +EG+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-------------HLPKTLEGM 111
Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
+ A E + S P+P ++W + + + + +++ + + +E
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171
Query: 816 DQAEWKCIATNDFGQSITSCFL 837
D + A N FG + L
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVEL 193
Score = 125 bits (315), Expect = 7e-33
Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 20/205 (9%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF--GN 297
AP F L ++ V+ + A L+ ++ P +K I G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-------------GKEIIADGL 50
Query: 298 RFR-AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD-APAFIRR 355
++R + G +L I V DD Y V A+N+ G + L VE P +
Sbjct: 51 KYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Query: 356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI-DLSSVSL 414
+ + G + + + I W + ++ N Y+ +F + + V
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170
Query: 415 FDSGRWTCLAENAVGRSHCSCELSV 439
D+G + A+N G + EL V
Sbjct: 171 KDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 121 bits (306), Expect = 1e-31
Identities = 44/212 (20%), Positives = 69/212 (32%), Gaps = 35/212 (16%)
Query: 447 APFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDIFA 494
AP F +EL + Q +L CKV G P P + WY+ K+I A G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPPGPAPI 552
L Y A N G+ T+ V P
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-----------------AKIHLPK 106
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG-VVEASDKYHIMADGLGGYSIE 611
++ + V A G ++ P P I W K +++ + Y ++ +
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQ-KGQDLIDNNGHYQVIVTRSFTSLVF 164
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
N +E D G + A + G+ Q + V
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGIDQ-KTVELDV 195
Score = 108 bits (272), Expect = 5e-27
Identities = 46/219 (21%), Positives = 70/219 (31%), Gaps = 36/219 (16%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF--GN 190
AP F L ++ V+ + A L+ ++ P +K I G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-------------GKEIIADGL 50
Query: 191 RFR-AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD-APAFIRR 248
++R + G +L I V DD Y V A+N+ G + L VE P +
Sbjct: 51 KYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Query: 249 LHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAI-NR 304
+ + G + + P I Q I ++ I R
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKG-------------QDLIDNNGHYQVIVTR 157
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
+ + V R D G Y V A N G EL V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 96.3 bits (240), Expect = 7e-23
Identities = 37/169 (21%), Positives = 53/169 (31%), Gaps = 21/169 (12%)
Query: 76 GDHPIF--GNRFR-AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
I G ++R + G +L I V DD Y V A+N+ G + L VE
Sbjct: 41 QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 100
Query: 133 PD-APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF- 188
P + + + G + + P I Q I
Sbjct: 101 KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-------------QDLIDN 147
Query: 189 GNRFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
++ I R + + V R D G Y V A N G EL V
Sbjct: 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 76.7 bits (189), Expect = 5e-16
Identities = 34/167 (20%), Positives = 45/167 (26%), Gaps = 39/167 (23%)
Query: 2 GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSLGTYTCEAVNCMGAAF 50
G P P + WY+ K+I A G L Y A N G+
Sbjct: 30 GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89
Query: 51 STSR--VIARGQ------------QSFLDNDDVPFN-RAQG-----------DHPIF-GN 83
T+ V + L + V G I
Sbjct: 90 GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149
Query: 84 RFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
++ I R + + V R D G Y V A N G EL V
Sbjct: 150 HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 170 bits (432), Expect = 2e-47
Identities = 59/302 (19%), Positives = 102/302 (33%), Gaps = 54/302 (17%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
+ SL V G F C +G P + E++ + S L
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 64
Query: 706 --------GSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
G Y C A + G+ + +T L I + F E +
Sbjct: 65 YNANIEDAGIYRCQATDAKGQTQEATVVLEIY------------------QKLTFREVVS 106
Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
+ E+ + +VS SP P VSW +++V + + L+I + +D
Sbjct: 107 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQILNINKSD 164
Query: 817 QAEWKCIATNDFGQSITSC--FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP 874
+ ++C + I + +NVP P+ A G + C+ G P
Sbjct: 165 EGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE--RGEEMTFSCRASGSP 222
Query: 875 QPTLKWFKDGRELKAGDIHKIISG-----------EDGTCCLGIYTCEAHNCMGTTSSSA 923
+P + WF++G+ ++ + + + DG G Y C A N G A
Sbjct: 223 EPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDG----GPYVCRATNKAGEDEKQA 278
Query: 924 AL 925
L
Sbjct: 279 FL 280
Score = 168 bits (427), Expect = 1e-46
Identities = 61/320 (19%), Positives = 109/320 (34%), Gaps = 50/320 (15%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
+ V+ +G S C + P SI WYN +G + ++ + + +G
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPE---SIDWYNPQGEKIISTQRVVVQKEG-VR 59
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG- 666
+ I D G ++C AT + G Q + + + F E + G
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK-----LTFREVVSPQEFKQGE 114
Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGDV--YQLTGTSSL----------GSYCCVAKN 714
C+V P P + W NEE+ + + ++L G Y C +
Sbjct: 115 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRV 174
Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI--EGLKSCQATVNEEFKFTVQV 772
+++ N P + + A EE F+ +
Sbjct: 175 EARGEIDFRD----------------IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 218
Query: 773 SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
S SPEP +SWFR+ + + E++ + L + + +D + C ATN G+
Sbjct: 219 SGSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKAGEDE 275
Query: 833 TSCFLKLNVPKHYKKPKFLE 852
FL++ V
Sbjct: 276 KQAFLQVFVQ-----HHHHH 290
Score = 154 bits (392), Expect = 5e-42
Identities = 57/319 (17%), Positives = 107/319 (33%), Gaps = 63/319 (19%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
T L + G + C +G P + +KI + + S L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKE-GVRSRL 62
Query: 506 ----------GTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
G Y C+A + G + + +
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK----------------------LT 100
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV---VEASDKYHIMADGLGGYS 609
F + V + K G A + C+V P P ++ W + +++ ++A+ +
Sbjct: 101 FREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWL-YHNEEVTTISDNRFAMLANN----N 154
Query: 610 IEINYLEAVDDGEWKCVAT-SSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
++I + D+G ++C + G F V V +P P+ + A +
Sbjct: 155 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEM 212
Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG-TSSL----------GSYCCVAKNVMG 717
+F C+ G P P + WF++ + ++ + Y L G + L G Y C A N G
Sbjct: 213 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 272
Query: 718 KAESSTQLTIED---IRNH 733
+ E L + +H
Sbjct: 273 EDEKQAFLQVFVQHHHHHH 291
Score = 141 bits (358), Expect = 2e-37
Identities = 49/299 (16%), Positives = 93/299 (31%), Gaps = 35/299 (11%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
L + + VG P I + QG+ I R
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESID-----------WYNPQGEKIISTQRVV 52
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDI 359
R+ L I +D G Y A++ G + A L + F +
Sbjct: 53 VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----KLTFREVVSPQ 108
Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE--NKIYRTQHDGNFYFIDLSSVSLFDS 417
K G A ++ + S + W ++ ++ + + + N +++ D
Sbjct: 109 EFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI---LNINKSDE 165
Query: 418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT---KELEAILTEQGTVSLECKVMGIP 474
G + C ++ V+V P + K A ++ C+ G P
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIVIV---NVPPAISMPQKSFNATAERGEEMTFSCRASGSP 222
Query: 475 TPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAVNCMGAAFSTSRVI 526
P + W+++ K I+ + + L + + S G Y C A N G + +
Sbjct: 223 EPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281
Score = 137 bits (346), Expect = 7e-36
Identities = 55/313 (17%), Positives = 92/313 (29%), Gaps = 36/313 (11%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
L + + VG P I + QG+ I R
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESID-----------WYNPQGEKIISTQRVV 52
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDI 252
R+ L I +D G Y A++ G + A L + F +
Sbjct: 53 VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----KLTFREVVSPQ 108
Query: 253 AVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
K G A ++ + SP + + + + L
Sbjct: 109 EFKQGEDAEVVCRVSSSPAPAVSWLYH-------------NEEVTTISDNRFAMLANNNL 155
Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 370
I + + D G Y E+ ++ V VP A + ++ + + G
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 215
Query: 371 VEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
SP I W+RN + +EEN+ Y + + ++ D G + C A N G
Sbjct: 216 CRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTV--RNIINSDGGPYVCRATNKAG 272
Query: 430 RSHCSCELSVLVP 442
L V V
Sbjct: 273 EDEKQAFLQVFVQ 285
Score = 124 bits (314), Expect = 1e-31
Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 19/204 (9%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
+ L + +V E FT PE + W+ + + S ++++ L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNL 866
I+ + D ++C AT+ GQ+ + L + Y+K F E + +G +
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATV-VLEI---YQKLTFREVVSPQEFKQGEDAEV 118
Query: 867 ECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHN-C 915
C+V P P + W E+ ++ + L GIY CE
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEGRVEA 176
Query: 916 MGTTSSSAALLGFEDKSQIEKAEE 939
G ++ I ++
Sbjct: 177 RGEIDFRDIIVIVNVPPAISMPQK 200
Score = 111 bits (278), Expect = 6e-27
Identities = 48/278 (17%), Positives = 81/278 (29%), Gaps = 36/278 (12%)
Query: 73 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQ 131
QG+ I R R+ L I +D G Y A++ G + A L +
Sbjct: 39 NPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ- 97
Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFG 189
F + K G A ++ + SP + + + +
Sbjct: 98 ---KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-------------NEEVTT 141
Query: 190 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 249
L I + + D G Y E+ ++ V VP A + ++
Sbjct: 142 ISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS 201
Query: 250 HDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 307
+ + G SP I + I N +
Sbjct: 202 FNATAERGEEMTFSCRASGSPEPAISWFRN-------------GKLIEENEKYILKGSNT 248
Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
L +R + DGG Y A+N++G + L V Q
Sbjct: 249 E-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
Score = 98.3 bits (245), Expect = 1e-22
Identities = 43/271 (15%), Positives = 73/271 (26%), Gaps = 49/271 (18%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P + +KI + + S L G Y C+A + G
Sbjct: 30 GEPESIDWYNPQGEKIISTQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 88
Query: 52 TS---RVIAR-------GQQSFLDNDDVPFN-RAQG-----------DHPIFGNRFRAIN 89
+ + + Q F +D R + +
Sbjct: 89 ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 148
Query: 90 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
L I + + D G Y E+ ++ V VP A + ++ + +
Sbjct: 149 MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208
Query: 150 GTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
G SP I + I N + L +R
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRN-------------GKLIEENEKYILKGSNTE-LTVRN 254
Query: 208 VRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
+ DGG Y A+N++G + L V Q
Sbjct: 255 IINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 162 bits (412), Expect = 6e-46
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 15/191 (7%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVC 805
+AP F + L+S F +S P P+VSWFRD Q + S + + + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAV 864
L I A+ A+ + ATN GQ+ ++ +L V P F++ L+++ + +G V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTA--ELLVKAETAPPNFVQRLQSMTVRQGSQV 121
Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHN 914
L+ +V G+P P +K+++DG E+++ +I E L G Y+ A N
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ-EGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 915 CMGTTSSSAAL 925
+G +S+A L
Sbjct: 181 SVGRATSTAEL 191
Score = 146 bits (370), Expect = 3e-40
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----GTS 703
+ P F + L++V+ +G +FE + GFP P + WF+D + + + + G +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE 753
L G Y A N G+A S+ +L ++ P F++
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKA---------------ETAPPNFVQ 108
Query: 754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE 813
L+S + + V+V+ P P V ++RD ++ S + +I +E + L I
Sbjct: 109 RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG-DLYSLLIAEAY 167
Query: 814 VADQAEWKCIATNDFGQSITSCFL 837
D + ATN G++ ++ L
Sbjct: 168 PEDSGTYSVNATNSVGRATSTAEL 191
Score = 139 bits (352), Expect = 8e-38
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 21/200 (10%)
Query: 340 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YR 397
++ + AP F + L + V G+ A I ++ W+R+ + + + + +
Sbjct: 1 MTTQ-----APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQ 55
Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI 457
+ + +V+ +SGR++ A N G++ + EL V A P F + L+++
Sbjct: 56 ISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--PPNFVQRLQSM 113
Query: 458 LTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------G 506
QG V L+ +V GIPTP + +Y+D +I++ F ++ D SL G
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-GDLYSLLIAEAYPEDSG 172
Query: 507 TYTCEAVNCMGAAFSTSRVI 526
TY+ A N +G A ST+ ++
Sbjct: 173 TYSVNATNSVGRATSTAELL 192
Score = 136 bits (343), Expect = 1e-36
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG- 607
AP F + +++V G++A E + P P + W+ ++G + S + G
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVP-EVSWF-RDGQVISTSTLPGVQISFSDGR 62
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
+ I + + G + AT+ SG + A + V P FV+ L+++ G
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATST-AELLVKAET--APPNFVQRLQSMTVRQGS 119
Query: 668 -VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSYCCVAK 713
V + +V G PTP +++++D E++ +Q++ SL G+Y A
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Query: 714 NVMGKAESSTQLTIE 728
N +G+A S+ +L ++
Sbjct: 180 NSVGRATSTAELLVQ 194
Score = 133 bits (336), Expect = 1e-35
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 233 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQG 290
++ + AP F + L + V G+ A I P E+ D I S
Sbjct: 1 MTTQ-----APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTL--- 51
Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
+ DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P
Sbjct: 52 ------PGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-TAPP 104
Query: 351 AFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
F++RL + V+ G++ RL V + PT + +YR+ +++ + ++ +G+ Y + +
Sbjct: 105 NFVQRLQSMTVRQGSQVRLQVRVTGIPT-PVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ DSG ++ A N+VGR+ + EL V
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 125 bits (315), Expect = 6e-33
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 34/211 (16%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIF-ALTANPKDPS 503
+AP FT+ L++++ +G T + E + G P P++ W++D + I + + +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
L G Y+ +A N G A ST+ ++ + P F
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELL-----------------VKAETAPPNF 106
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEI 612
++ ++++ + G+ L+ +V P P + +Y ++G +++S + I +G YS+ I
Sbjct: 107 VQRLQSMTVRQGSQVRLQVRVTGIPTP-VVKFY-RDGAEIQSSLDFQISQEG-DLYSLLI 163
Query: 613 NYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
D G + AT+S G S A + V
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRAT-STAELLV 193
Score = 119 bits (299), Expect = 1e-30
Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 34/223 (15%)
Query: 126 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQG 183
++ + AP F + L + V G+ A I P E+ D I S
Sbjct: 1 MTTQ-----APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTL--- 51
Query: 184 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
+ DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P
Sbjct: 52 ------PGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-TAPP 104
Query: 244 AFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
F++RL + V+ G++ RL V + PT +K D I F+
Sbjct: 105 NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRD-------------GAEIQSSLDFQ 151
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
L I +D G YSV A+N G +T+ EL V+
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 106 bits (266), Expect = 3e-26
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 84 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
+ DGR +L I V + + GRYS+ A+N SG +T+ EL V+++ P F++RL
Sbjct: 53 GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-TAPPNFVQRLQ 111
Query: 144 DIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGR 200
+ V+ G++ RL V + PT +K D I F+
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRD-------------GAEIQSSLDFQISQEGDL 158
Query: 201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
L I +D G YSV A+N G +T+ EL V+
Sbjct: 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 85.5 bits (212), Expect = 5e-19
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 36/164 (21%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF-ALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
G P P++ W++D + I + + + L G Y+ +A N G A
Sbjct: 31 GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 51 STSRVIARGQ------------QSFLDNDDVPFN-RAQG-----------DHPIF-GNRF 85
ST+ ++ + + + V R G I F
Sbjct: 91 STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF 150
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
+ L I +D G YSV A+N G +T+ EL V+
Sbjct: 151 QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 157 bits (400), Expect = 3e-44
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 12/189 (6%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
+AP + +K + E + + Q+ P P + W+R +++++S K+ +
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG-RTHT 64
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
L + E D+ + CIATN+ G+ TS L L + L+E + G + L
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYG-AVGSTLRL 123
Query: 867 ECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCM 916
IG P P + WF + L+ + I + E T + G Y + N
Sbjct: 124 HVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVF 183
Query: 917 GTTSSSAAL 925
GT + +
Sbjct: 184 GTVDAILDV 192
Score = 135 bits (342), Expect = 2e-36
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 19/192 (9%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
AP + + D+ K+G A+L +I P I WYR ++L +++ Y+ DG +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPD---IKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVS 465
+ + + D G +TC+A N VG S +L + + + KE + T+
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKE-KYYGAVGSTLR 122
Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVN 514
L +G P P + W+ K ++ + + + L G Y + N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE-HYTHLVMKNVQRKTHAGKYKVQLSN 181
Query: 515 CMGAAFSTSRVI 526
G + V
Sbjct: 182 VFGTVDAILDVE 193
Score = 135 bits (341), Expect = 2e-36
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 37/206 (17%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
P + +K V T G C++VG P P ++W++ +EL Y+++ T +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL- 755
G Y C+A N +G+ E+S++L ++ P+F G
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA------------------TPQFHPGYP 108
Query: 756 --KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIH-AL 812
+ V + V P P ++WF + + S+N+ I HL +
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE-HYTHLVMKNVQ 167
Query: 813 EVADQAEWKCIATNDFGQSITSCFLK 838
++K +N FG ++
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAILDVE 193
Score = 132 bits (333), Expect = 3e-35
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 20/197 (10%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
G AP KE+++V K+G +A L CQ++ P P I WY + G + S KY + +DG
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWY-RFGKELIQSRKYKMSSDG-R 61
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
+++ + E D+G + C+AT+ G + S+ + + + ++
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETSS-KLLLQATPQFHPGYPLKEKYYG-AVGS 119
Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-----------GSYCCVA 712
+ +G P P + WF + L+ + + + L G Y
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQL 179
Query: 713 KNVMGKAESSTQLTIED 729
NV G ++ + I+D
Sbjct: 180 SNVFGTVDAILDVEIQD 196
Score = 114 bits (288), Expect = 3e-29
Identities = 38/203 (18%), Positives = 78/203 (38%), Gaps = 20/203 (9%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
AP + + D+ K+G A+L +I P +IK + +R
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF-------------GKELIQSRK 53
Query: 300 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
++ DGRT L + ++D G Y+ A+NE G +L +++ P
Sbjct: 54 YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-TPQFHPGYPLKEK 112
Query: 359 IAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL-FD 416
VG+ RL V P + W+ + L+ ++ ++ ++ + + +V
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVP-AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTH 171
Query: 417 SGRWTCLAENAVGRSHCSCELSV 439
+G++ N G ++ +
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVEI 194
Score = 100 bits (250), Expect = 3e-24
Identities = 44/216 (20%), Positives = 76/216 (35%), Gaps = 34/216 (15%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
AP + + D+ K+G A+L +I P +IK + +R
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF-------------GKELIQSRK 53
Query: 193 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
++ DGRT L + ++D G Y+ A+NE G +L +++ P
Sbjct: 54 YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-TPQFHPGYPLKEK 112
Query: 252 IAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRT 308
VG+ RL V P + + N + T
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVPAMTWFHG-------------QKLLQNSENITIENTEHYT 159
Query: 309 ELNIRRV-RRDDGGRYSVTASNESGYSTAKFELSVE 343
L ++ V R+ G+Y V SN G A ++ ++
Sbjct: 160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 88.2 bits (219), Expect = 5e-20
Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 19/166 (11%)
Query: 76 GDHPIFGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
+ +R ++ DGRT L + ++D G Y+ A+NE G +L +++ P
Sbjct: 44 FGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-TPQ 102
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
VG+ RL V P + +
Sbjct: 103 FHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHG-------------QKLLQNSEN 149
Query: 192 FRAINRDGRTELNIRRV-RRDDGGRYSVTASNESGYSTAKFELSVE 236
N + T L ++ V R+ G+Y V SN G A ++ ++
Sbjct: 150 ITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 79.7 bits (197), Expect = 5e-17
Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 37/164 (22%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P + WY+ K++ + ++++ +L G YTC A N +G +
Sbjct: 33 GRPLPDIKWYRFGKELIQSRKYKMSSDG-RTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 52 TSRVI------------ARGQQSFLDNDDVPFN-RAQG-----------DHPIF-GNRFR 86
+S+++ + + + + G +
Sbjct: 92 SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENIT 151
Query: 87 AINRDGRTELNIRRV-RRDDGGRYSVTASNESGYSTAKFELSVE 129
N + T L ++ V R+ G+Y V SN G A ++ ++
Sbjct: 152 IENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 158 bits (400), Expect = 1e-42
Identities = 53/316 (16%), Positives = 98/316 (31%), Gaps = 43/316 (13%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
+ ++ G V C G P W KD L P + + G L
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLN 67
Query: 706 ------GSYCCVAKNVMGKAESSTQLTIEDI---RNHLSEEDKLLLLTNNKAPKFIE--- 753
G+Y C + + + + E++ + AP +
Sbjct: 68 ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127
Query: 754 -GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
K +F + +P P +SW ++ ++ + +K L + ++
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 813 EVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVI 871
+D+ + C+ N FG + L + ++ G V CKV
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 872 GVPQPTLKWFK----DGRELKAGDIHKII--------SGEDGTCCL----------GIYT 909
QP ++W K +G ++ + + + L G YT
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307
Query: 910 CEAHNCMGTTSSSAAL 925
C A N +G + SA L
Sbjct: 308 CLAGNSIGFSHHSAWL 323
Score = 148 bits (376), Expect = 2e-39
Identities = 56/340 (16%), Positives = 100/340 (29%), Gaps = 68/340 (20%)
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGV-VEASDKYHIMAD 603
+ E + G + L C P W K+G + S++ +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMG-PTVWV-KDGTGLVPSERVLV--- 58
Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN--------------- 648
G +++ D G + C + V + V
Sbjct: 59 --GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVD 116
Query: 649 YRKPRFVESLKAVMTD-----DGLVSFECKVVGFPTPTLQWFKDNEELKP----GDVYQL 699
P + + V F C G PTP++ W K+ E + G +
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176
Query: 700 TGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
SL G+Y CV +N G + L + + H +
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-------------RPI 223
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ------QVVESDNVKILKET-- 801
+ A + + +F +V +P + W + + + V +LK
Sbjct: 224 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283
Query: 802 ----LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
+ L +H + D E+ C+A N G S S +L
Sbjct: 284 NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
Score = 147 bits (372), Expect = 6e-39
Identities = 58/330 (17%), Positives = 95/330 (28%), Gaps = 49/330 (14%)
Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALT---- 496
A + E ++ G V L C G P +W KD + + +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRL 63
Query: 497 ----ANPKDPSSLGTYTCEAVNCMGAAFS-TSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
A+ +D G Y+C + RV ++ + AP
Sbjct: 64 QVLNASHEDS---GAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120
Query: 552 IFIK----EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
+ + + + + + C P P SI W K G + +
Sbjct: 121 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP-SISWL-KNGREFRGEHRIGGIKLRHQ 178
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
+S+ + + D G + CV + G + + + VL +R G
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLG 237
Query: 667 L-VSFECKVVGFPTPTLQWFKDNEEL----------------KPGDVYQLTGTSSL---- 705
V F CKV P +QW K E G L
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHN 297
Query: 706 ------GSYCCVAKNVMGKAESSTQLTIED 729
G Y C+A N +G + S L +
Sbjct: 298 VTFEDAGEYTCLAGNSIGFSHHSAWLVVLP 327
Score = 135 bits (340), Expect = 9e-35
Identities = 62/361 (17%), Positives = 97/361 (26%), Gaps = 76/361 (21%)
Query: 344 SQVPDAPAFIRRL-HDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQH 400
+ + P + G L P W ++ L ++
Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGP-MGPTVWVKDGTGLVPSE-RVLVG 59
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA---------------- 444
+ S DSG ++C P +
Sbjct: 60 PQRLQV---LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVD 116
Query: 445 YKAPFFTKELEAILTEQ-----GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP 499
AP++T+ TV C G PTP + W K+ ++ +
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176
Query: 500 KDPSSL----------GTYTCEAVNCMGAAFSTS--RVIARGQQSFLDNDDVPFNSLMPP 547
SL G YTC N G+ T V+ R P
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER-----------------SP 219
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-----NKEGVVEASDKYHIMA 602
+ N A +G+ C+V P I W N V Y +
Sbjct: 220 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVL 278
Query: 603 DGLGGYSIEIN----YLEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFV 655
G + + L V D GE+ C+A +S G +A++ VL + V
Sbjct: 279 KTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH-HSAWLVVLPA----EEELV 333
Query: 656 E 656
E
Sbjct: 334 E 334
Score = 128 bits (324), Expect = 1e-32
Identities = 57/345 (16%), Positives = 90/345 (26%), Gaps = 77/345 (22%)
Query: 237 SQVPDAPAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP-- 293
+ + P + G L C G P
Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVEL----------SC------------PPPGGGPMG 39
Query: 294 -IF----GNRFRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-- 344
G R G L + +D G YS ++
Sbjct: 40 PTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99
Query: 345 ---------------QVPDAPAFIR----RLHDIAVKVGTRARLLVEIRSPTEIKIHWYR 385
AP + R +AV R I W +
Sbjct: 100 SGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 159
Query: 386 NDRKLE-ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
N R+ E++I + + + + SV D G +TC+ EN G + L VL
Sbjct: 160 NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 219
Query: 445 YKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYK----DNKKIKAGDIFALTANP 499
++ G V CKV P + W K + K+ +T
Sbjct: 220 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 279
Query: 500 --------KDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
K+ L G YTC A N +G + ++ ++
Sbjct: 280 TAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Score = 113 bits (285), Expect = 1e-27
Identities = 60/360 (16%), Positives = 94/360 (26%), Gaps = 80/360 (22%)
Query: 130 SQVPDAPAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP-- 186
+ + P + G L C G P
Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVEL----------SC------------PPPGGGPMG 39
Query: 187 -IF----GNRFRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-- 237
G R G L + +D G YS ++
Sbjct: 40 PTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99
Query: 238 ---------------QVPDAPAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQF 276
AP + R +AV R +PT I
Sbjct: 100 SGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 159
Query: 277 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 336
+ G+H I G + R + L + V D G Y+ N+ G
Sbjct: 160 N-GREFR------GEHRIGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Query: 337 KFELSVESQVPDAP-AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI 395
+ L V + P P + +G+ ++ S + I W ++
Sbjct: 209 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268
Query: 396 YRTQH-------------DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
D + L +V+ D+G +TCLA N++G SH S L VL
Sbjct: 269 PDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
Score = 102 bits (256), Expect = 1e-23
Identities = 46/282 (16%), Positives = 74/282 (26%), Gaps = 42/282 (14%)
Query: 90 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-----------------QV 132
G L + +D G YS ++
Sbjct: 57 LVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVD 116
Query: 133 PDAPAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHP 186
AP + R +AV R +PT I + G+H
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFR------GEHR 169
Query: 187 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP-AF 245
I G + R + L + V D G Y+ N+ G + L V + P P
Sbjct: 170 IGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQ 225
Query: 246 IRRLHDIAVKVGTRARLLVEIRS-PT-EI---KCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
+ +G+ ++ S I K + +
Sbjct: 226 AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANT 285
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
L++ V +D G Y+ A N G+S L V
Sbjct: 286 TDKELEV--LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 68.1 bits (166), Expect = 3e-12
Identities = 33/177 (18%), Positives = 50/177 (28%), Gaps = 50/177 (28%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G PTP + W K+ ++ + SL G YTC N G+
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Query: 52 TS--RVIARGQ------------QSFLDNDDVPFN-RAQGD------------------- 77
T V+ R Q+ + DV F+ + D
Sbjct: 209 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268
Query: 78 ------HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
+ L++ V +D G Y+ A N G+S L V
Sbjct: 269 PDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 60.0 bits (145), Expect = 1e-09
Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 16/91 (17%)
Query: 848 PKFLEELKAVLS--EGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISG------ 898
P + L G AV L C G P W KDG L + +
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLN 67
Query: 899 ---EDGTCCLGIYTCEAHNCMGTTSSSAALL 926
ED G Y+C + +
Sbjct: 68 ASHEDS----GAYSCRQRLTQRVLCHFSVRV 94
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 150 bits (379), Expect = 3e-40
Identities = 53/305 (17%), Positives = 101/305 (33%), Gaps = 39/305 (12%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGY 608
+ +G S CQV + I W+ N E + + ++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
++ I D G +KCV T+ G + + V + ++K F + +G
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEFKEGED 117
Query: 668 VSFECKVVGFPTPTLQWFKDNEEL--KPGDVYQLTGTSSL----------GSYCCVAKNV 715
C VV PT+ W ++ K + + + L G+Y C + +
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI--EGLKSCQATVNEEFKFTVQVS 773
+ + + N P + + + A + +
Sbjct: 178 ARGEINFKDIQ----------------VIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 774 ISPEPKVSWFRDDQQVVESDNVKILK-ETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
PEP +SW +D + + + + L I ++ D+AE+ CIA N G+
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 833 TSCFL 837
S L
Sbjct: 282 ASIHL 286
Score = 146 bits (371), Expect = 3e-39
Identities = 55/312 (17%), Positives = 95/312 (30%), Gaps = 62/312 (19%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPT-PTLQWFKDNEELKPGD------VYQLTG 701
R + G F C+V G + WF N E + V+
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF 751
+S+L G Y CV G +T + + + F
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT-----------------VNVKIFQKLMF 103
Query: 752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHA 811
+ E+ V S P + W + V+ +V+ + + L+I
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRG 161
Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNV---PKHYKKPKFLEELKAVLSEGGAVNLEC 868
++ D+ ++C I +++ V P + + A + G +V L C
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVN---ATANLGQSVTLVC 218
Query: 869 KVIGVPQPTLKWFKDGRELKAGDIHKI---------------ISGEDGTCCLGIYTCEAH 913
G P+PT+ W KDG ++ + + D Y C A
Sbjct: 219 DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDE----AEYVCIAE 274
Query: 914 NCMGTTSSSAAL 925
N G +S L
Sbjct: 275 NKAGEQDASIHL 286
Score = 136 bits (343), Expect = 2e-35
Identities = 44/311 (14%), Positives = 99/311 (31%), Gaps = 38/311 (12%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKL---EENKIYRTQHDGNFY 405
+ VG L ++ + I W+ + + + +I +D +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 406 FIDLSSVSLFDSGRWTCLAENAVG-RSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-T 463
+ + + ++ D+G + C+ G +S + + + F ++G
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-----LMFKNAPTPQEFKEGED 117
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD--------PSSLGTYTCEAVNC 515
+ C V+ P +IW + + + + GTY CE
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 516 MGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL 575
+ + VP P + + N A +G S L C
Sbjct: 178 ARGEINFKDIQVIVN--------VP--------PTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 576 VPPWPRSIYWYNKEGVVEASDKYHIMA-DGLGGYSIEINYLEAVDDGEWKCVATSSSGVK 634
P P ++ W +E ++ + I ++ D+ E+ C+A + +G +
Sbjct: 222 GFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ 280
Query: 635 QFSAAYVHVLM 645
++ ++ V
Sbjct: 281 D-ASIHLKVFA 290
Score = 133 bits (337), Expect = 9e-35
Identities = 52/315 (16%), Positives = 107/315 (33%), Gaps = 60/315 (19%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPT-PQLIWYKDNKK--IKAGDIFALTANPKD 501
+ G + C+V G + W+ N + ++ N D
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 502 PSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
S+L G Y C G + + +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK-----------IF--------QKL 101
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG---VVEASDKYHIMADGLGGY 608
+F + K G A++ C V+ P +I W +G +++ ++ ++++
Sbjct: 102 MFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWK-HKGRDVILKKDVRFIVLSNN---- 155
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
++I ++ D+G ++C + + V V +P + + + + A +
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS-- 213
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL----------GSYCCVA 712
V+ C GFP PT+ W KD E ++ + +S L Y C+A
Sbjct: 214 VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 273
Query: 713 KNVMGKAESSTQLTI 727
+N G+ ++S L +
Sbjct: 274 ENKAGEQDASIHLKV 288
Score = 114 bits (287), Expect = 4e-28
Identities = 50/315 (15%), Positives = 90/315 (28%), Gaps = 36/315 (11%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGN-RF 192
+ VG CQ + F G+ R
Sbjct: 3 LQVDIVPSQGEISVGESKFF----------LCQVAGDAKDKDISWFSPNGEKLSPNQQRI 52
Query: 193 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
+ D + L I DD G Y + E G + E +V ++ F
Sbjct: 53 SVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG---TQSEATVNVKIFQKLMFKNAPTP 109
Query: 252 IAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
K G A ++ ++ S I + + +
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHK-------------GRDVILKKDVRFIVLSNNY 156
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
L IR +++ D G Y + ++ V VP + + + +G L
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTL 216
Query: 370 LVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL--SSVSLFDSGRWTCLAEN 426
+ + P + W ++ +E + +H + +L +V D + C+AEN
Sbjct: 217 VCDADGFPE-PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 275
Query: 427 AVGRSHCSCELSVLV 441
G S L V
Sbjct: 276 KAGEQDASIHLKVFA 290
Score = 99 bits (249), Expect = 4e-23
Identities = 48/280 (17%), Positives = 79/280 (28%), Gaps = 55/280 (19%)
Query: 83 NRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
R + D + L I DD G Y + E G + E +V ++ F
Sbjct: 50 QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG---TQSEATVNVKIFQKLMFKNA 106
Query: 142 LHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 199
K G A ++ ++ S I + + +
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-------------GRDVILKKDVRFIVLS 153
Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
L IR +++ D G Y + ++ V VP + + + +G
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS 213
Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------DHPIFGNRFRAINR---D 305
L C A G PI D
Sbjct: 214 VTL----------VC------------DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 251
Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+EL IR V ++D Y A N++G A L V ++
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 91.1 bits (226), Expect = 4e-20
Identities = 43/283 (15%), Positives = 74/283 (26%), Gaps = 70/283 (24%)
Query: 4 PTPQLIWYKDNKK--IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
+ W+ N + ++ N D S+L G Y C G
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 52 TS---RVIAR-------GQQSFLDNDDVPFN-RAQG-----------DHPIFGNRFRAIN 89
+ ++ + Q F + +D + +
Sbjct: 91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Query: 90 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
L IR +++ D G Y + ++ V VP + + + +
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210
Query: 150 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------DHPIFGNRFRAINR- 197
G L C A G PI
Sbjct: 211 GQSVTL----------VC------------DADGFPEPTMSWTKDGEPIENEEEDDEKHI 248
Query: 198 --DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
D +EL IR V ++D Y A N++G A L V ++
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 63.7 bits (155), Expect = 6e-11
Identities = 29/167 (17%), Positives = 48/167 (28%), Gaps = 36/167 (21%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIFALTANPKD--------PSSLGTYTCEAVNCMGAAFST 52
+ P +IW + + + + GTY CE +
Sbjct: 125 VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINF 184
Query: 53 SRVIA--------RGQQSFLD-----NDDVPFN-RAQG-----------DHPIFGNRFRA 87
+ + +QS ++ V A G PI
Sbjct: 185 KDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD 244
Query: 88 INR---DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
D +EL IR V ++D Y A N++G A L V ++
Sbjct: 245 EKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 51.4 bits (123), Expect = 6e-07
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 20/120 (16%)
Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQ-PTLKWFKDGRELKAGDIHKI--ISGEDG 901
+ + +S G + C+V G + + WF E + + +I + +D
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 902 TCCL----------GIYTCEAHNCMGTTSSSAALL------GFEDKSQIEKAEEGKKALI 945
+ L GIY C GT S + + F++ ++ +EG+ A+I
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 146 bits (369), Expect = 5e-40
Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
F + + + + +F +Q +S KV++ +++++ E K+ + G+
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKK--------------PKFLE 852
+ + L+ D+ + + + ++ L +V K +K P F+E
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 853 ELKAVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKIISGEDGTCCL------ 905
L ++ V L+CKV + + T + W+KD RE+ + H +DG C L
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGICTLLITEFS 179
Query: 906 ----GIYTCEAHNCMGTTSSSAALLG 927
GIY + G S L+
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 131 bits (331), Expect = 6e-35
Identities = 37/205 (18%), Positives = 75/205 (36%), Gaps = 31/205 (15%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
F + + + + R ++ + K+++ N++++ E Y+ D N I+
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 409 L--SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK--------------APFFTK 452
+ + D G +T ++ +H + L V K + P F +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 453 ELEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKIKAGDIFALT----------ANPKD 501
L +T + V L+CKV I ++WYKD ++I + + KD
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKD 182
Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVI 526
G Y + G S +++
Sbjct: 183 ---AGIYEVILKDDRGKDKSRLKLV 204
Score = 126 bits (317), Expect = 4e-33
Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 29/208 (13%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQV-LVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
G P F K V+ Q + + + E + KY + D
Sbjct: 1 GIDP-FTKSELAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNT 58
Query: 607 G-YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK-------------P 652
G + + L+ D+G + + V + K ++ P
Sbjct: 59 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118
Query: 653 RFVESLKAVMTDDGLVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQL-TGTSSL----- 705
FVE L +T + V +CKV T + W+KD E+ + + G +L
Sbjct: 119 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 178
Query: 706 -----GSYCCVAKNVMGKAESSTQLTIE 728
G Y + K+ GK +S +L E
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 120 bits (303), Expect = 4e-31
Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 23/205 (11%)
Query: 652 PRFVESLKAV-MTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQL-----TGTSS 704
F +S AV + + G V F + + + + +E+ G Y++ TG
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSE-EDKLLLLTNNKAPKFIE 753
+ G+Y ++ S+ L + + E E + + P F+E
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 754 GLKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
L S + T +V+ I E + W++D++++ + G+C L I
Sbjct: 123 YL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GICTLLITEF 178
Query: 813 EVADQAEWKCIATNDFGQSITSCFL 837
D ++ I +D G+ + L
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 102 bits (255), Expect = 8e-25
Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 38/219 (17%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIR--SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
F + + + + R ++ S ++ F+ + IF
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-------------EKEIFEGPK 49
Query: 300 RAINRD---GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------------- 342
++ D G E+ + +++ +D G Y+ + + + L
Sbjct: 50 YKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109
Query: 343 -ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQH 400
E P F+ L V L ++ E I WY+++R++ ++ + +
Sbjct: 110 QEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
I + S D+G + + ++ G+ +L
Sbjct: 169 GICTLLI--TEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 100 bits (250), Expect = 4e-24
Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 17/204 (8%)
Query: 447 APFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGD-----------IFA 494
PF EL + E+G V + ++ + + K+I G I
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
+ GTYT + + ST ++ + + + P F+
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG-PHFV 121
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
+ + + + + +L+C+V I WY K+ + D+ H DG+ ++ I
Sbjct: 122 EYL-SWEVTGECNVLLKCKVANIKKETHIVWY-KDEREISVDEKHDFKDGIC--TLLITE 177
Query: 615 LEAVDDGEWKCVATSSSGVKQFSA 638
D G ++ + G +
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRL 201
Score = 91.5 bits (227), Expect = 6e-21
Identities = 34/233 (14%), Positives = 70/233 (30%), Gaps = 52/233 (22%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR--SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
F + + + + R ++ S ++ F+ + IF
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-------------EKEIFEGPK 49
Query: 193 RAINRD---GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------------- 235
++ D G E+ + +++ +D G Y+ + + + L
Sbjct: 50 YKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109
Query: 236 -ESQVPDAPAFIRRLHDIAVKVGTRARLLVEI---RSPTEIKCQFDLNNTIPFSFRAQGD 291
E P F+ L V L ++ + T I D +
Sbjct: 110 QEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD-------------E 155
Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
I + +DG L I + D G Y V ++ G ++ +L E+
Sbjct: 156 REISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 80.0 bits (197), Expect = 4e-17
Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 36/182 (19%)
Query: 77 DHPIFGNRFRAINRD---GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV----- 128
+ IF ++ D G E+ + +++ +D G Y+ + + + L
Sbjct: 41 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 100
Query: 129 ----------ESQVPDAPAFIRRLHDIAVKVGTRARLLVEI---RSPTEIKCQFDLNNTI 175
E P F+ L V L ++ + T I D
Sbjct: 101 LQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD----- 154
Query: 176 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+ I + +DG L I + D G Y V ++ G ++ +L
Sbjct: 155 --------EREISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Query: 236 ES 237
E+
Sbjct: 206 EA 207
Score = 78.1 bits (192), Expect = 2e-16
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 27/163 (16%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCC 904
F + AV + E G V + + + + +E+ G +K+ I G
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 905 L----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDP----- 949
+ G YT + + T S+ L+G K ++AE ++ I K
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 950 SLSTIQEEGTS-----EIYDTPMASIEEREISFSFDGKEVSVS 987
LS + ++ + +E I + D +E+SV
Sbjct: 123 YLSWEVTGECNVLLKCKVANIK----KETHIVWYKDEREISVD 161
Score = 68.8 bits (168), Expect = 3e-13
Identities = 22/180 (12%), Positives = 45/180 (25%), Gaps = 52/180 (28%)
Query: 2 GIPTPQLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEAVNCMGAAF 50
++ + + K+I G I + GTYT + +
Sbjct: 29 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 88
Query: 51 STSRVIARGQQSFLDNDDVPFN----------------------------RAQG------ 76
ST ++ + + +
Sbjct: 89 STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETH 148
Query: 77 ------DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
+ I + +DG L I + D G Y V ++ G ++ +L E+
Sbjct: 149 IVWYKDEREISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 148 bits (376), Expect = 1e-39
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 12/190 (6%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV-ESDNVKILKETLGVCH 806
AP F E L++ +V+ P+P V W+R ++++ + +I + G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVN 865
L I ++ D ++ ATN G + L++ VP PK LE + AV G V+
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
++ G P P + W K + +++I T + G Y A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 916 MGTTSSSAAL 925
G + L
Sbjct: 184 FGIDQKTVEL 193
Score = 124 bits (312), Expect = 3e-31
Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 29/203 (14%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKP-GDVYQLT----GTSSL 705
P F E L+ + + CKV G P P ++W++ +E+ G Y++ G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
Y A N G + L +E PK +EG+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-------------AKIHLPKTLEGM 111
Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
+ A E + S P+P ++W + + + + +++ + + +E
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171
Query: 816 DQAEWKCIATNDFGQSITSCFLK 838
D + A N FG + L
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELD 194
Score = 118 bits (298), Expect = 2e-29
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 18/196 (9%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGY 608
AP F +E+ N+ + ++A L C+V P P + WY + ++ KY I G +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
+ I + D ++ AT+ G + A + V +P P+ +E + AV G +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------------GSYCCVAK 713
VS + G P P + W K + + YQ+ T S G Y AK
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 714 NVMGKAESSTQLTIED 729
N G + + +L + D
Sbjct: 182 NRFGIDQKTVELDVAD 197
Score = 112 bits (281), Expect = 4e-27
Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 13/191 (6%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYF 406
AP F L ++ V+ + A L+ ++ + + WYR +++ + K + G ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVS 465
+ ++SV+ D+ + A N G + L V VP P + + A+ +G VS
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNC 515
++ G P P + W K I + + S + G Y A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 516 MGAAFSTSRVI 526
G T +
Sbjct: 184 FGIDQKTVELD 194
Score = 108 bits (271), Expect = 8e-26
Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 17/209 (8%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
AP F L ++ V+ + A L+ ++ P +K I G ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIAD----------GLKY 52
Query: 300 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ-VPDAPAFIRRLH 357
R G +L I V DD Y V A+N+ G + L VE P + +
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG 112
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY-FIDLSSVSLFD 416
+ G + + + I W + ++ N Y+ +F + + V D
Sbjct: 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKD 172
Query: 417 SGRWTCLAENAVGRSHCSCELSVL-VPKA 444
+G + A+N G + EL V VP
Sbjct: 173 AGFYVVCAKNRFGIDQKTVELDVADVPDP 201
Score = 105 bits (263), Expect = 8e-25
Identities = 65/355 (18%), Positives = 106/355 (29%), Gaps = 88/355 (24%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
AP F L ++ V+ + A L+ ++ P +K I G ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIAD----------GLKY 52
Query: 193 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ-VPDAPAFIRRLH 250
R G +L I V DD Y V A+N+ G + L VE P + +
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG 112
Query: 251 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR-AINRDGRTE 309
+ G + K F +++ D ++ + R +
Sbjct: 113 AVHALRGEVVSI----------KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL 162
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
+ V R D G Y V A N G EL V + VPD P ++
Sbjct: 163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV-ADVPDPPRGVK--------------- 206
Query: 370 LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN----FYFIDLSSVSLFDSGRWTCL-- 423
V S + + W DG Y ++ + + RW +
Sbjct: 207 -VSDVSRDSVNLTWTEP------------ASDGGSKITNYIVEKCAT---TAERWLRVGQ 250
Query: 424 ----------------------AENAVGRSHCSCELSVLVPK--AYKAPFFTKEL 454
AEN G S S + K +A + +E+
Sbjct: 251 ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305
Score = 100 bits (250), Expect = 4e-23
Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 28/204 (13%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSS 504
AP F +EL + +L CKV G P P + WY+ K+I A G + +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
L Y A N G+ T+ + P +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI---------------HLPKTL 108
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
+ + V A G ++ P P I W + +++ + Y ++ + N
Sbjct: 109 EGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167
Query: 615 LEAVDDGEWKCVATSSSGVKQFSA 638
+E D G + A + G+ Q +
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTV 191
Score = 92.5 bits (230), Expect = 2e-20
Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 14/169 (8%)
Query: 82 GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ-VPDAPAFI 139
G ++R G +L I V DD Y V A+N+ G + L VE P +
Sbjct: 49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL 108
Query: 140 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR-AINRD 198
+ + G + K F +++ D ++ + R
Sbjct: 109 EGMGAVHALRGEVVSI----------KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS 158
Query: 199 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
+ + V R D G Y V A N G EL V + VPD P ++
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV-ADVPDPPRGVK 206
Score = 77.1 bits (190), Expect = 2e-15
Identities = 36/178 (20%), Positives = 53/178 (29%), Gaps = 40/178 (22%)
Query: 2 GIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
G P P + WY+ K+I A G + + L Y A N G+
Sbjct: 30 GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89
Query: 51 STSRVI--------------ARGQQSFLDNDDVPFN-RAQGDHPI------------FGN 83
T+ + G L + V G
Sbjct: 90 GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149
Query: 84 RFR-AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
++ + R + + V R D G Y V A N G EL V + VPD P ++
Sbjct: 150 HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV-ADVPDPPRGVK 206
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 143 bits (363), Expect = 4e-39
Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 16/199 (8%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
T P+F F Q + P PK+ W + ++V I +
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 804 VCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNVPKHYKK--PKFLEELK-AVLS 859
L+I L D+A ++C+A+N+ G+ S L + + P + V+
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS--GEDGTCCL----------GI 907
+ C G P P + WFKD + + + I + L G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181
Query: 908 YTCEAHNCMGTTSSSAALL 926
Y C A N GT S+ A L
Sbjct: 182 YECVATNSAGTRYSAPANL 200
Score = 139 bits (351), Expect = 1e-37
Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 30/213 (14%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL 705
PRF + G + SF C+ G P P + W K +++ + S L
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 706 -----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
Y CVA N +G+ ST+LT+ P G
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG-----------FPTIDMG 114
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK--ETLGVCHLKIHAL 812
+ S +P+P+++WF+D V S+N +K + + L+I
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS 174
Query: 813 EVADQAEWKCIATNDFGQSIT-SCFLKLNVPKH 844
E +DQ +++C+ATN G + L + KH
Sbjct: 175 EESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
Score = 126 bits (318), Expect = 5e-33
Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 18/203 (8%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFI 407
P F R D G A + + KI W + +K+ + + DG+ +
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 408 DLSSVSLF-DSGRWTCLAENAVGRSHCSCELSVLVP--KAYKAPFFTKELEAILTEQG-T 463
+ + D + C+A N VG S L+VL P + + E+ T
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKA------------GDIFALTANPKDPSSLGTYTCE 511
++ C G P P++ W+KD + I AL + S G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 512 AVNCMGAAFSTS-RVIARGQQSF 533
A N G +S + RG +
Sbjct: 186 ATNSAGTRYSAPANLYVRGTKHH 208
Score = 120 bits (302), Expect = 6e-31
Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 30/217 (13%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
P FT+ G S C+ G P P+++W K KK+ + + S
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 505 L-----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
L Y C A N +G ++R+ V +P G P
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLT------------VLREDQIPRGF-PTI 111
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHI-MADGLGGYSI 610
+ + +A + C P P I W+ K+ V +++ I ++
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGNPDP-EITWF-KDFLPVDTSNNNGRIKQLRSESIGAL 169
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
+I E D G+++CVAT+S+G + + A ++V K
Sbjct: 170 QIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
Score = 107 bits (269), Expect = 2e-26
Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 25/214 (11%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
P F R D G A + + P +I + RF
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK-------------GKKVSNQRF 52
Query: 300 RAINRD--GRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSV---ESQVPDAPAFI 353
I D + L I+ +R D Y ASN G + L+V + P
Sbjct: 53 EVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID 112
Query: 354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL---EENKIYRTQHDGNFYFIDLS 410
V+ A +L + +I W+++ + N + + + +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIE 172
Query: 411 SVSLFDSGRWTCLAENAVGRSH-CSCELSVLVPK 443
D G++ C+A N+ G + L V K
Sbjct: 173 QSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
Score = 93.7 bits (233), Expect = 9e-22
Identities = 44/220 (20%), Positives = 66/220 (30%), Gaps = 33/220 (15%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
P F R D G A + + P +I + RF
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK-------------GKKVSNQRF 52
Query: 193 RAINRD--GRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSV---ESQVPDAPAFI 246
I D + L I+ +R D Y ASN G + L+V + P
Sbjct: 53 EVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID 112
Query: 247 RRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
V+ A +L +P EI D + S R + +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKD-FLPVDTSNN--------NGRIKQLRS 163
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVE 343
+ L I + D G+Y A+N +G +A L V
Sbjct: 164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
Score = 84.5 bits (209), Expect = 1e-18
Identities = 36/169 (21%), Positives = 55/169 (32%), Gaps = 18/169 (10%)
Query: 77 DHPIFGNRFRAINRD--GRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSV---ES 130
+ RF I D + L I+ +R D Y ASN G + L+V +
Sbjct: 44 GKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQ 103
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
P V+ A +L +P EI D + S
Sbjct: 104 IPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD-FLPVDTSNN-------- 154
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVE 236
R + + + L I + D G+Y A+N +G +A L V
Sbjct: 155 NGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
Score = 72.9 bits (179), Expect = 1e-14
Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 44/172 (25%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVNCMGAAF 50
G P P+++W K KK+ + + S L Y C A N +G
Sbjct: 32 GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEIS 91
Query: 51 STSRV-------IARGQQSFL---------DNDDVPFN-RAQG-----------DHPI-- 80
++R+ I RG + A G P+
Sbjct: 92 VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDT 151
Query: 81 --FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVE 129
R + + + L I + D G+Y A+N +G +A L V
Sbjct: 152 SNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
Score = 44.4 bits (105), Expect = 5e-05
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 2 GIPTPQLIWYKDNKKIKA------------GDIFALTANPKDPSSLGTYTCEAVNCMGAA 49
G P P++ W+KD + I AL + S G Y C A N G
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193
Query: 50 FSTS-RVIARGQQSF 63
+S + RG +
Sbjct: 194 YSAPANLYVRGTKHH 208
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 146 bits (369), Expect = 1e-37
Identities = 65/497 (13%), Positives = 116/497 (23%), Gaps = 85/497 (17%)
Query: 455 EAILTEQGTVSLECKVMGIPTPQLIWYK--DNKKIKAGDIFALTANPKDPSSLGTYTCEA 512
+ IL G+V + C L K++ + C +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYS 67
Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
NC + L +G + L C
Sbjct: 68 -NCPDGQSTAK------------------TFLTVYWTPERVELAPLPSWQPVGKNLTLRC 108
Query: 573 QVL-VPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSS 630
QV P ++ E ++ + + + C
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREP----AVGEPAEVTTTVLVRRDHHGANFSCRTELD 164
Query: 631 SG------VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGF---PTPT 681
+ SA Y P+ V + + C + G
Sbjct: 165 LRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQ--GTVVCSLDGLFPVSEAQ 222
Query: 682 LQWFKDNEELKP-----GDVYQLTGTSSL-----GSYCCVAKNVMGKAESSTQLTIEDIR 731
+ ++ L P D + + S+ G+ ++G T T
Sbjct: 223 VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT----- 277
Query: 732 NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE 791
+T P L + + E + P KV+ Q +
Sbjct: 278 -----------VTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTLNGVPAQPLG 324
Query: 792 SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFL 851
L + A + + C AT + + + Y P+
Sbjct: 325 PRA-----------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-PRLD 372
Query: 852 EEL---KAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIY 908
E E C+ G P P LK KDG ++ + G Y
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLE----GTY 428
Query: 909 TCEAHNCMGTTSSSAAL 925
C A + G + +
Sbjct: 429 LCRARSTQGEVTREVTV 445
Score = 134 bits (338), Expect = 1e-33
Identities = 53/492 (10%), Positives = 124/492 (25%), Gaps = 75/492 (15%)
Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
++++ + C + + + + G +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIETPLPK-------KELLLPGNNRKVYELSNVQED 60
Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLLVEIRS---P 376
+ ++ G STAK L+V P + VG L ++
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTV----YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116
Query: 377 TEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436
+ + R +++L+ + + ++C E +
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEPAEVTTT---VLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 437 LSVLVPKAYKAPFFTK-----ELEAILTEQGTVSLECKVMGI---PTPQLIWYKDNKKIK 488
+ P + +L ++ C + G+ Q+ ++++
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 489 A-----GDIFALTANPK-DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN 542
D F+ A+ GT +G +
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY------------ 281
Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA 602
P + + GT ++C+ ++ + + +
Sbjct: 282 ------SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKV-TLNGVPAQPLGPRA------- 327
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF---SAAYVHVLMPKNYRKPRFVESL- 658
+ + + + C AT + + VL PR E
Sbjct: 328 ------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-----PRLDERDC 376
Query: 659 --KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVM 716
++ + C+ G P P L+ KD P G+Y C A++
Sbjct: 377 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQ 436
Query: 717 GKAESSTQLTIE 728
G+ + +
Sbjct: 437 GEVTREVTVNVL 448
Score = 133 bits (335), Expect = 3e-33
Identities = 62/508 (12%), Positives = 127/508 (25%), Gaps = 88/508 (17%)
Query: 358 DIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF 415
+ + G + P + I ++L N +LS+V
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKEL-------LLPGNNRKVYELSNVQ-- 58
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMG-- 472
+ + C + G+S L+V G ++L C+V G
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWT----PERVELAPLPSWQPVGKNLTLRCQVEGGA 114
Query: 473 -IPTPQLIWYKDNKKIK--------AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
++ + K++K A + ++C +
Sbjct: 115 PRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHG--ANFSCRTELDLR---PQG 169
Query: 524 RVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQV--LVPPWPR 581
+ + + P +P ++ T + C + L P
Sbjct: 170 LELFENTSAPYQLQTFVLPATPPQLVSPRVLEV--------DTQGTVVCSLDGLFPVSEA 221
Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
++ + + + Y D + E C + ++ V
Sbjct: 222 QVHLALGDQRLNPTVTYGN--DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT-V 278
Query: 642 HVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT 700
+ Y P L +G V+ +C+ TL G QL
Sbjct: 279 TI-----YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ---PLGPRAQLL 330
Query: 701 GTSSL----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
++ S+ C A + T E L P+ E
Sbjct: 331 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRE--------------LRVLYGPRLDERDC 376
Query: 757 SCQATVNE--EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
T E + Q +P P++ +D + +
Sbjct: 377 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTR-------------- 422
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVP 842
+ + C A + G+ + + P
Sbjct: 423 DLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 114 bits (287), Expect = 4e-27
Identities = 44/380 (11%), Positives = 93/380 (24%), Gaps = 49/380 (12%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
V G S ++ C P + K ++ G E++ ++
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQ-PMLLGIETP------LPKKELLLPGNNRKVYELSNVQ- 58
Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVG- 676
+D + C + G P+ + L + ++ C+V G
Sbjct: 59 -EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVE----LAPLPSWQPVGKNLTLRCQVEGG 113
Query: 677 --FPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQ 724
T+ + +ELK + ++ C + +
Sbjct: 114 APRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 725 LTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL-KSCQATVNEEFKFTVQVS---ISPEPKV 780
+ P L V+ + + E +V
Sbjct: 174 ENTSAPYQLQTFV----------LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
Query: 781 SWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
DQ++ + V ++ E C T + +
Sbjct: 224 HLALGDQRL--NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 281
Query: 841 VPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED 900
+ K +SEG V ++C+ + TL + + ED
Sbjct: 282 SF----PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 337
Query: 901 GTCCLGIYTCEAHNCMGTTS 920
++C A +
Sbjct: 338 NG---RSFSCSATLEVAGQL 354
Score = 111 bits (278), Expect = 7e-26
Identities = 57/469 (12%), Positives = 122/469 (26%), Gaps = 75/469 (15%)
Query: 4 PTPQLIWYK--DNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR------- 54
L K++ + C + NC +
Sbjct: 27 QPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYS-NCPDGQSTAKTFLTVYWT 85
Query: 55 ----VIARGQQSFLDNDDVPFN-RAQGDHPIFG------------NRFRAINRDGRTELN 97
+A ++ + +G P R A+
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTT 145
Query: 98 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV 157
+ R G +S + + + AP ++ A + ++
Sbjct: 146 VLVRRDHHGANFSCRTELDLRPQGLELFENTS-----APYQLQTFVLPATPPQLVSPRVL 200
Query: 158 EIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
E+ + + C D + + A GD + N D + V +D G
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGNDSFSAKASVSVTAEDEGT 258
Query: 216 YSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQ 275
+T + G + + +V PA L V GT + E ++
Sbjct: 259 QRLTCAVILGNQSQETLQTVTIYSF--PAPNVILTKPEVSEGTEVTVKCEAHPRAKVT-- 314
Query: 276 FDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST 335
+ G + + R +L ++ D+G +S +A+ E
Sbjct: 315 ------------------LNGVPAQPLGP--RAQLLLKATPEDNGRSFSCSATLEVAGQL 354
Query: 336 AKFELSVESQVPDAPAFIRRLH--DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393
+ E +V P R + ++ + + ++ ++
Sbjct: 355 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 414
Query: 394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ +V+ G + C A + G ++VL P
Sbjct: 415 G-------------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 94.9 bits (235), Expect = 2e-20
Identities = 51/385 (13%), Positives = 98/385 (25%), Gaps = 94/385 (24%)
Query: 3 IPTPQLIWYKDNKKIK--------AGDIFALTANPKDPSSLGTYTCEA---VNCMGAAFS 51
++ + K++K A + ++C + G
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHG--ANFSCRTELDLRPQGLELF 173
Query: 52 TSRVIARGQQSFLDNDDVPFN----------------RAQGDHPIFGNRFR--------- 86
+ Q+F+ P G P+ +
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 87 ---AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
D + V +D G +T + G + + +V PA L
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--PAPNVILT 291
Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 203
V GT + E ++ + G + + R +L
Sbjct: 292 KPEVSEGTEVTVKCEAHPRAKVT--------------------LNGVPAQPLGP--RAQL 329
Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH--DIAVKVGTRAR 261
++ D+G +S +A+ E + E +V P R + ++
Sbjct: 330 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT 389
Query: 262 LLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
+ + E+KC D +P V RD
Sbjct: 390 PMCQAWGNPLPELKCLKDGTFPLPIG-------------------------ESVTVTRDL 424
Query: 320 GGRYSVTASNESGYSTAKFELSVES 344
G Y A + G T + ++V S
Sbjct: 425 EGTYLCRARSTQGEVTREVTVNVLS 449
Score = 57.2 bits (137), Expect = 2e-08
Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 24/149 (16%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR-- 58
P ++ G L + +++C A +
Sbjct: 306 EAHPRAKVTLNG-VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 364
Query: 59 -------------GQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRTEL---NIRRV 101
G ++ +N +A G+ + +DG L V
Sbjct: 365 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP---ELK-CLKDGTFPLPIGESVTV 420
Query: 102 RRDDGGRYSVTASNESGYSTAKFELSVES 130
RD G Y A + G T + ++V S
Sbjct: 421 TRDLEGTYLCRARSTQGEVTREVTVNVLS 449
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 138 bits (350), Expect = 2e-37
Identities = 27/203 (13%), Positives = 66/203 (32%), Gaps = 16/203 (7%)
Query: 656 ESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL------- 705
LK T +G+ + + W + ++ D + L
Sbjct: 9 TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 68
Query: 706 ---GSYCCVAKNVMGKAESSTQLTIE---DIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
G Y + + + L+ + + + + N+A
Sbjct: 69 NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT 128
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
+ T V P P+VSW ++++ + ++D+ + E + I+ + AD +
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGK 188
Query: 820 WKCIATNDFGQSITSCFLKLNVP 842
+ + N +G + + + +P
Sbjct: 189 YGLVVKNKYGSETSDFTVSVFIP 211
Score = 132 bits (334), Expect = 3e-35
Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 29/193 (15%)
Query: 761 TVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
+ E + V+ + KV+W + + SD VK L+I+ D+ +
Sbjct: 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDKGK 73
Query: 820 WKCIATNDFGQSITSCFLKLNVPKHYK---------------KPKFLEELKAVLS--EGG 862
+ + + L + + L L V++ EG
Sbjct: 74 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 133
Query: 863 AVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEA 912
A+NL C V G P P + W K+ + L D + T G Y
Sbjct: 134 ALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 193
Query: 913 HNCMGTTSSSAAL 925
N G+ +S +
Sbjct: 194 KNKYGSETSDFTV 206
Score = 125 bits (316), Expect = 9e-33
Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 28/192 (14%)
Query: 363 VGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWT 421
+L + ++K++W N + + +T G ++ ++ + D G++
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 422 CLAENAVGRSHCSCELSV----------------LVPKAYKAPFFTKELEAILTEQG-TV 464
+ + +LS + + +A + + ++G +
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135
Query: 465 SLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVN 514
+L C V G P P++ W K+ K + D L + G Y N
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195
Query: 515 CMGAAFSTSRVI 526
G+ S V
Sbjct: 196 KYGSETSDFTVS 207
Score = 110 bits (277), Expect = 1e-27
Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 19/171 (11%)
Query: 291 DHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES----- 344
I + +R + + L I +D G+Y + + +LS ++
Sbjct: 41 GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAY 100
Query: 345 ------------QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE 392
+ A + ++ G L + ++ W +N++ L +
Sbjct: 101 AEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ 160
Query: 393 N-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
G + ++ VS DSG++ + +N G +SV +P
Sbjct: 161 TDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 107 bits (269), Expect = 1e-26
Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 16/211 (7%)
Query: 448 PFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL- 505
+L+ T +G + L V + ++ W + I+ D + L
Sbjct: 5 ALSATDLKIQSTAEG-IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQ 62
Query: 506 ---------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP-PGPAPIFIK 555
G Y E + T + + + + A +
Sbjct: 63 INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 122
Query: 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYL 615
+ V + G + L C V P P + W E + +D ++ + IN +
Sbjct: 123 LPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGV 181
Query: 616 EAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
D G++ V + G + S V V +P
Sbjct: 182 STADSGKYGLVVKNKYG-SETSDFTVSVFIP 211
Score = 92.2 bits (229), Expect = 3e-21
Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 21/179 (11%)
Query: 77 DHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
I + +R + + L I +D G+Y + + +LS ++ +A
Sbjct: 41 GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEA 99
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------D 184
A +RL A+ RAR+L + I+ + + G +
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ----EGKALNLTCNVWGDPPPEVSWLKNE 155
Query: 185 HPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
+ + GRT I V D G+Y + N+ G T+ F +SV +P+
Sbjct: 156 KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV--FIPE 212
Score = 92.2 bits (229), Expect = 3e-21
Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 21/179 (11%)
Query: 184 DHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
I + +R + + L I +D G+Y + + +LS ++ +A
Sbjct: 41 GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEA 99
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------D 291
A +RL A+ RAR+L + I+ + + G +
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ----EGKALNLTCNVWGDPPPEVSWLKNE 155
Query: 292 HPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
+ + GRT I V D G+Y + N+ G T+ F +SV +P+
Sbjct: 156 KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV--FIPE 212
Score = 76.8 bits (189), Expect = 6e-16
Identities = 24/187 (12%), Positives = 43/187 (22%), Gaps = 57/187 (30%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
+ ++ W + I+ D + L G Y E +
Sbjct: 29 YVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDKGKYVMELFDGKTGHQK 87
Query: 52 TSRVIARGQQSFLDNDDVPFN-------------------------------RAQG---- 76
T + + G
Sbjct: 88 TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP 147
Query: 77 -------DHPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELS 127
+ + + GRT I V D G+Y + N+ G T+ F +S
Sbjct: 148 EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Query: 128 VESQVPD 134
V +P+
Sbjct: 208 V--FIPE 212
Score = 68.7 bits (168), Expect = 4e-13
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 22/125 (17%)
Query: 852 EELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----- 905
+LK + S + L V V + W +G ++ D K L
Sbjct: 9 TDLK-IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV-TGEQIWLQINEP 66
Query: 906 -----GIYTCEAHNCMGTTSSSAALLG---------FEDKSQIEKAEEGKKALIVKDPSL 951
G Y E + + L G F+ Q AE+ + ++ P +
Sbjct: 67 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 126
Query: 952 STIQE 956
TIQE
Sbjct: 127 VTIQE 131
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 131 bits (331), Expect = 4e-35
Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 18/190 (9%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
+ L + +V E FT PE + ++++ + V + KE L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEG-VRSRL 60
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNL 866
I+ + D ++C AT+ GQ+ + + L + Y+K F E + +G +
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVV-LEI---YQKLTFREVVSPQEFKQGEDAEV 116
Query: 867 ECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCM 916
C+V P P + W E+ ++ + L GIY CE
Sbjct: 117 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEGRVEA 174
Query: 917 GTTSSSAALL 926
++
Sbjct: 175 RGEIDFRDII 184
Score = 119 bits (301), Expect = 4e-31
Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 33/204 (16%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
+ SL V G F C +G P + E++ + S L
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS 757
G Y C A + G+ + +T ++L + F E +
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEAT-----------------VVLEIYQKLTFREVVSP 105
Query: 758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQ 817
+ E+ + +VS SP P VSW +++V + + +L+I + +D+
Sbjct: 106 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDE 163
Query: 818 AEWKCIATNDFGQSITSCFLKLNV 841
++C + I + + V
Sbjct: 164 GIYRCEGRVEARGEIDFRDIIVIV 187
Score = 116 bits (293), Expect = 6e-30
Identities = 31/189 (16%), Positives = 59/189 (31%), Gaps = 17/189 (8%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
L + + VG P I + K+ + Q +G +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 408 DLSSVSLFDSGRWTCLAENAVGR-SHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVS 465
+ + ++ D+G + C A +A G+ + L + F + + +QG
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK-----LTFREVVSPQEFKQGEDAE 115
Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIF--------ALTANPKDPSSLGTYTCEAVNCMG 517
+ C+V P P + W N+++ L + S G Y CE
Sbjct: 116 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 175
Query: 518 AAFSTSRVI 526
+I
Sbjct: 176 GEIDFRDII 184
Score = 116 bits (291), Expect = 1e-29
Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 22/193 (11%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
+ V+ +G S C + P I WYN +G + ++ + + +G
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPES--IDWYNPQGEKIISTQRVVVQKEG-VRS 58
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
+ I D G ++C AT + G Q + + + F E + G
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK-----LTFREVVSPQEFKQGED 113
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPG--DVYQLTGTSSL----------GSYCCVAKNV 715
C+V P P + W NEE+ + + + ++L G Y C +
Sbjct: 114 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE 173
Query: 716 MGKAESSTQLTIE 728
+ +
Sbjct: 174 ARGEIDFRDIIVI 186
Score = 100 bits (250), Expect = 3e-24
Identities = 31/201 (15%), Positives = 58/201 (28%), Gaps = 16/201 (7%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
L + + VG C + QG+ I R
Sbjct: 2 LLQVTISLSKVELSVGESKFF----------TCTAIGEPESIDWYNPQGEKIISTQRVVV 51
Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLHDIA 360
R+ L I +D G Y A++ G A L + F +
Sbjct: 52 QKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----KLTFREVVSPQE 107
Query: 361 VKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRW 420
K G A ++ + S + W ++ ++ R N + + +++ D G +
Sbjct: 108 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIY 166
Query: 421 TCLAENAVGRSHCSCELSVLV 441
C ++ V+V
Sbjct: 167 RCEGRVEARGEIDFRDIIVIV 187
Score = 85.2 bits (211), Expect = 4e-19
Identities = 33/215 (15%), Positives = 55/215 (25%), Gaps = 30/215 (13%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
L + + VG C + QG+ I R
Sbjct: 2 LLQVTISLSKVELSVGESKFF----------TCTAIGEPESIDWYNPQGEKIISTQRVVV 51
Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLHDIA 253
R+ L I +D G Y A++ G A L + F +
Sbjct: 52 QKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----KLTFREVVSPQE 107
Query: 254 VKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
K G A ++ + SP + + + + R L
Sbjct: 108 FKQGEDAEVVCRVSSSPAPAVSWLYH------------NEEVTTISDNRFAMLANNN-LQ 154
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 346
I + + D G Y E+ ++ V V
Sbjct: 155 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
Score = 76.0 bits (187), Expect = 8e-16
Identities = 26/161 (16%), Positives = 44/161 (27%), Gaps = 20/161 (12%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIR 140
R R+ L I +D G Y A++ G A L + F
Sbjct: 46 TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----KLTFRE 101
Query: 141 RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD 198
+ K G A ++ + SP + + + + R
Sbjct: 102 VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH------------NEEVTTISDNRFAMLA 149
Query: 199 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 239
L I + + D G Y E+ ++ V V
Sbjct: 150 NNN-LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
Score = 69.0 bits (169), Expect = 2e-13
Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 35/164 (21%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P + +KI + + S L G Y C+A + G
Sbjct: 28 GEPESIDWYNPQGEKIISTQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQTQE 86
Query: 52 TS---RVIAR-------GQQSFLDNDDVPFN-RAQG-----------DHPI-FGNRFRAI 88
+ + + Q F +D R + + + R
Sbjct: 87 ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 146
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
L I + + D G Y E+ ++ V V
Sbjct: 147 MLANNN-LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 129 bits (326), Expect = 2e-34
Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 26/196 (13%)
Query: 748 APKFIEGLKSCQATVNE--EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
P KS AT E F+ + S SPEP +SWFR+ + + E++ +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN---T 58
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVN 865
L + + +D + C ATN G+ FL++ V P ++ E G V
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ-----PHIIQLKNETTYENGQVT 113
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKI------ISGEDGTCCL----------GIYT 909
L C G P P + W + + K + G+ G+ L G Y
Sbjct: 114 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 173
Query: 910 CEAHNCMGTTSSSAAL 925
CEA + +G S L
Sbjct: 174 CEAASRIGGHQKSMYL 189
Score = 120 bits (302), Expect = 3e-31
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 30/200 (15%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
PA ++ N A+ G C+ P P +I W+ ++E ++KY +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSN---T 58
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
+ + + D G + C AT+ +G + A ++ V + P ++ ++G V
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQA-FLQVFVQ-----PHIIQLKNETTYENGQV 112
Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGD----------VYQLTGTSSL----------GSY 708
+ C G P P + W + + + V G+SSL G Y
Sbjct: 113 TLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 172
Query: 709 CCVAKNVMGKAESSTQLTIE 728
C A + +G + S L IE
Sbjct: 173 DCEAASRIGGHQKSMYLDIE 192
Score = 113 bits (285), Expect = 6e-29
Identities = 40/196 (20%), Positives = 63/196 (32%), Gaps = 25/196 (12%)
Query: 349 APAFI--RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
PA ++ + + G E I W+RN + +EEN+ Y +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSL 466
+ ++ D G + C A N G L V V P + E G V+L
Sbjct: 62 V--RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ-----PHIIQLKNETTYENGQVTL 114
Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGDIFAL------TANPKDPSSL----------GTYTC 510
C G P P++ W + + SSL G Y C
Sbjct: 115 VCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174
Query: 511 EAVNCMGAAFSTSRVI 526
EA + +G + +
Sbjct: 175 EAASRIGGHQKSMYLD 190
Score = 111 bits (280), Expect = 3e-28
Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 39/206 (18%)
Query: 652 PRFVESLK---AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-GTSSL-- 705
P K A ++F C+ G P P + WF++ + ++ + Y L + L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS 757
G Y C A N G+ E L + P I+ LK+
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFV------------------QPHIIQ-LKN 103
Query: 758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL------KETLGVCHLKIHA 811
N + P P+++W R ++ K L K G L I
Sbjct: 104 ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKD 163
Query: 812 LEVADQAEWKCIATNDFGQSITSCFL 837
++++D + C A + G S +L
Sbjct: 164 VKLSDSGRYDCEAASRIGGHQKSMYL 189
Score = 92.6 bits (230), Expect = 1e-21
Identities = 40/217 (18%), Positives = 68/217 (31%), Gaps = 47/217 (21%)
Query: 447 APFFTKELE---AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPS 503
P + + A ++ C+ G P P + W+++ K I+ + + L +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK---GSNT 58
Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
L G Y C A N G + + V + P
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFL------------QV----FVQP-----H 97
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-------NKEGVVEASDKYHIMADGLG 606
I +++N L C P P I W EG + + G
Sbjct: 98 IIQLKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQH-G 155
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
S+ I ++ D G + C A S G Q + Y+ +
Sbjct: 156 SSSLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDI 191
Score = 87.9 bits (218), Expect = 5e-20
Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 30/215 (13%)
Query: 135 APAFI--RRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGN 190
PA ++ + + G SP I + I N
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-------------GKLIEEN 48
Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
+ L +R + DGG Y A+N++G + L V V P I+ +
Sbjct: 49 EKYILKGSNTE-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV--FVQ--PHIIQLKN 103
Query: 251 DIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 308
+ + L+ + P EI + ++ R + G +
Sbjct: 104 ETTY-ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE-----GDKSLDGRIEVKGQHGSS 157
Query: 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
L+I+ V+ D GRY A++ G L +E
Sbjct: 158 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 87.2 bits (216), Expect = 1e-19
Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 30/209 (14%)
Query: 242 APAFI--RRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGN 297
PA ++ + + G SP I + I N
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-------------GKLIEEN 48
Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
+ L +R + DGG Y A+N++G + L V V P I+ +
Sbjct: 49 EKYILKGSNTE-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV--FVQ--PHIIQLKN 103
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRN-------DRKLEENKIYRTQHDGNFYFIDLS 410
+ + L+ + +I W R + + + + +
Sbjct: 104 ETTY-ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIK 162
Query: 411 SVSLFDSGRWTCLAENAVGRSHCSCELSV 439
V L DSGR+ C A + +G S L +
Sbjct: 163 DVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 85.2 bits (211), Expect = 5e-19
Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 13/162 (8%)
Query: 77 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
I N + L +R + DGG Y A+N++G + L V V P
Sbjct: 42 GKLIEENEKYILKGSNTE-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV--FVQ--P 96
Query: 137 AFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
I+ ++ + L+ + P EI + ++ R
Sbjct: 97 HIIQLKNETTY-ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE-----GDKSLDGRIEV 150
Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
+ G + L+I+ V+ D GRY A++ G L +E
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 76.8 bits (189), Expect = 5e-16
Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 41/166 (24%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P + W+++ K I+ + + L + L G Y C A N G
Sbjct: 30 GSPEPAISWFRNGKLIEENEKYILK---GSNTELTVRNIINSDGGPYVCRATNKAGEDEK 86
Query: 52 TSRV--------IARGQQSFLDNDDVPFN-RAQGD-------------------HPIFGN 83
+ + I ++ +N V A+G+
Sbjct: 87 QAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDG 146
Query: 84 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
R + G + L+I+ V+ D GRY A++ G L +E
Sbjct: 147 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 128 bits (324), Expect = 8e-34
Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 22/200 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-VKILKETL 802
T P+ I ++ V F P P + W ++ ++V + + +L++
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNV----PKHYKKPKFLEELK-A 856
G+ L+I + D A ++C+A N G ++ S L + P +
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAV-SADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG----------EDGTCCLG 906
V+ G V + CK IG P P + W K+ ++ + + ED G
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQ----G 176
Query: 907 IYTCEAHNCMGTTSSSAALL 926
Y C A N MGT S A L
Sbjct: 177 KYECVAENSMGTEHSKATNL 196
Score = 118 bits (297), Expect = 3e-30
Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 43/232 (18%)
Query: 438 SVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA------- 489
+ P P ++ + G S C G P P ++W K+ KK+
Sbjct: 2 TGAHP-----PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTV 56
Query: 490 ----GDIFALTANPKDPSS-LGTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPF 541
G I L P Y C A N +G A S + +
Sbjct: 57 LEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK----------- 105
Query: 542 NSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHI 600
P P+ + ++G + ++ C+ + P P +IYW K V+ S+ +
Sbjct: 106 ----TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP-NIYWI-KNQTKVDMSNPRYS 159
Query: 601 MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
+ DG ++I D G+++CVA +S G + A ++V + + K
Sbjct: 160 LKDG----FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKH 207
Score = 114 bits (287), Expect = 6e-29
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 17/195 (8%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGY 608
P I++ +N ++G A C P P SI W N + V +Y ++ G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 609 SIEINYLEAVDD-GEWKCVATSSSGVKQFSAAYVHVLM--PKNYRKPRFVESLKAVMTDD 665
+ I + A D ++CVA + G + A + + P + + +
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 666 GL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKN 714
G V CK +G PTP + W K+ ++ + L G Y CVA+N
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAEN 184
Query: 715 VMGKAESS-TQLTIE 728
MG S T L ++
Sbjct: 185 SMGTEHSKATNLYVK 199
Score = 98.3 bits (245), Expect = 2e-23
Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 28/221 (12%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
P IR+ + V+VG A R P I + + + + +R+
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKN-GKKVSGT----------QSRY 54
Query: 300 RAINRDGR-TELNIRRVRR-DDGGRYSVTASNESGYS-TAKFELSV---ESQVPDAPAFI 353
+ + G + L I VR D Y A N G + +A L++ + P
Sbjct: 55 TVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT 114
Query: 354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVS 413
+ ++VG + + I+W +N K++ + + DG + +
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQ---IENSR 171
Query: 414 LFDSGRWTCLAENAVGRSHCSC-ELSVLVPKAYKAPFFTKE 453
D G++ C+AEN++G H L V V TK
Sbjct: 172 EEDQGKYECVAENSMGTEHSKATNLYVKVR-----RVGTKH 207
Score = 80.2 bits (198), Expect = 4e-17
Identities = 46/235 (19%), Positives = 78/235 (33%), Gaps = 41/235 (17%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
P IR+ + V+VG A R P I + + + + +R+
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKN-GKKVSGT----------QSRY 54
Query: 193 RAINRDGR-TELNIRRVRR-DDGGRYSVTASNESGYS-TAKFELSV---ESQVPDAPAFI 246
+ + G + L I VR D Y A N G + +A L++ + P
Sbjct: 55 TVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT 114
Query: 247 RRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
+ ++VG + + +PT I + + + R +
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN-------------QTKVDMSNPRYSLK 161
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVESQVPDAPAFIRRLHD 358
DG L I R +D G+Y A N G +K L V +V + H
Sbjct: 162 DG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV--KVR--RVGTKHHHH 210
Score = 74.4 bits (183), Expect = 4e-15
Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 28/179 (15%)
Query: 82 GNRFRAINRDGR-TELNIRRVRR-DDGGRYSVTASNESGYS-TAKFELSV---ESQVPDA 135
+R+ + + G + L I VR D Y A N G + +A L++ +
Sbjct: 51 QSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 110
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
P + ++VG + + +PT I + + + R
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN-------------QTKVDMSNPR 157
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVESQVPDAPAFIRRLHD 251
+DG L I R +D G+Y A N G +K L V +V + H
Sbjct: 158 YSLKDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV--KVR--RVGTKHHHH 210
Score = 71.7 bits (176), Expect = 4e-14
Identities = 39/185 (21%), Positives = 53/185 (28%), Gaps = 48/185 (25%)
Query: 2 GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSS-LGTYTCEAVNCMGAA 49
G P P ++W K+ KK+ G I L P Y C A N +G A
Sbjct: 32 GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDA 91
Query: 50 FSTS--------RVIARGQQSFL---------DNDDVPFN-RAQG-----------DHPI 80
S G V +A G +
Sbjct: 92 VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 151
Query: 81 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVESQVPDAPAFI 139
+ R +DG L I R +D G+Y A N G +K L V +V
Sbjct: 152 DMSNPRYSLKDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV--KVR--RVGT 205
Query: 140 RRLHD 144
+ H
Sbjct: 206 KHHHH 210
Score = 43.2 bits (102), Expect = 1e-04
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIFALTAN------PKDPSSLGTYTCEAVNCMGAAFSTS 53
+G PTP + W K+ K+ + + G Y C A N MG S +
Sbjct: 135 IGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKA 193
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 127 bits (321), Expect = 1e-33
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
KAP L++ A V E F V P+P++SW R+ + D ++E +
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL-- 63
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVN 865
L I ++E +D + C A N G ++ SC L V KPK V + EG
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGA-LQV---KMKPKITRPPINVKIIEGLKAV 119
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
L C +G P+P++ W K L+ ++ E G+ L G Y C A N
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVL--ESGS--LRIHNVQKEDAGQYRCVAKNS 175
Query: 916 MGTTSSSAALL 926
+GT S L
Sbjct: 176 LGTAYSKLVKL 186
Score = 124 bits (312), Expect = 2e-32
Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 22/192 (11%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGY 608
AP+ +E V A + A C V P P I W NK + +Y I + G
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIREN---GQ 62
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL- 667
+ I +E DDG + C A + G S + V M P+ V +GL
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK-----PKITRPPINVKIIEGLK 117
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
C +G P P++ W K + L+ + + SL G Y CVAKN +G
Sbjct: 118 AVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 718 KAESST-QLTIE 728
A S +L +E
Sbjct: 178 TAYSKLVKLEVE 189
Score = 119 bits (301), Expect = 4e-31
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 16/188 (8%)
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDGN 403
++P AP L + V A + + S + +I W RN ++ + Y + +G
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC-ELSVLVPKAYKAPFFTKELEAILTEQG 462
I SV D G + C A N VG + SC L V + P T+ + +G
Sbjct: 63 LLTI--LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK-----PKITRPPINVKIIEG 115
Query: 463 -TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN------PKDPSSLGTYTCEAVNC 515
L C MG P P + W K + ++ A+ + G Y C A N
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNS 175
Query: 516 MGAAFSTS 523
+G A+S
Sbjct: 176 LGTAYSKL 183
Score = 117 bits (294), Expect = 4e-30
Identities = 45/206 (21%), Positives = 76/206 (36%), Gaps = 35/206 (16%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-YQLTGTSSL-- 705
+ P L+ V + +F C V +P P + W ++ +K D Y + L
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
G YCC A N +G A S L PK
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGA-----------------LQVKMKPKITRPPI 108
Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
+ + + +P+P VSW + D + E+ + +L+ L+IH ++ D
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG----SLRIHNVQKED 164
Query: 817 QAEWKCIATNDFGQSITSCFLKLNVP 842
+++C+A N G + S +KL V
Sbjct: 165 AGQYRCVAKNSLG-TAYSKLVKLEVE 189
Score = 102 bits (257), Expect = 4e-25
Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 42/218 (19%)
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD------ 291
++P AP L + V A C +
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATF----------MC------------AVESYPQPEIS 40
Query: 292 -----HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQ 345
I R R+ L I V D G Y TA+N G + + L V+
Sbjct: 41 WTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM- 99
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
P R ++ + G +A L + + W + D L EN G+
Sbjct: 100 ---KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLR 156
Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSHCSC-ELSVLVP 442
+ +V D+G++ C+A+N++G ++ +L V V
Sbjct: 157 ---IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 85.6 bits (212), Expect = 4e-19
Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 56/228 (24%)
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD------ 184
++P AP L + V A C +
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATF----------MC------------AVESYPQPEIS 40
Query: 185 -----HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQ 238
I R R+ L I V D G Y TA+N G + + L V+
Sbjct: 41 WTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM- 99
Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFG 296
P R ++ + G +A L +P + D +
Sbjct: 100 ---KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG-------------DSALRE 143
Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVE 343
N A+ G L I V+++D G+Y A N G + +K +L VE
Sbjct: 144 NSRIAVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 75.1 bits (185), Expect = 1e-15
Identities = 38/164 (23%), Positives = 58/164 (35%), Gaps = 23/164 (14%)
Query: 77 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDA 135
I R R+ L I V D G Y TA+N G + + L V+
Sbjct: 45 KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM----K 100
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
P R ++ + G +A L +P + D + N
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG-------------DSALRENSRI 147
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVE 236
A+ G L I V+++D G+Y A N G + +K +L VE
Sbjct: 148 AVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 63.6 bits (155), Expect = 1e-11
Identities = 36/159 (22%), Positives = 54/159 (33%), Gaps = 33/159 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAGDI--------FALTANPKDPSSLGTYTCEAVNCMGAAFSTS 53
P P++ W ++ IK D LT + S G Y C A N +G A +
Sbjct: 33 SYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC 92
Query: 54 RV--------IARG--QQSFLDNDDVPFN-RAQG-----------DHPIFGNRFRAINRD 91
I R ++ G D + N A+
Sbjct: 93 GALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152
Query: 92 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVE 129
G L I V+++D G+Y A N G + +K +L VE
Sbjct: 153 G--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 125 bits (315), Expect = 5e-33
Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 21/191 (10%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
F E + + E+ + +VS SP P VSW +++V + + L
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--L 59
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK---AVLSEGGAV 864
+I + +D+ ++C + I + + V P K A G +
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV---NVPPAISMPQKSFNATAERGEEM 116
Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHN 914
C+ G P+P + WF++G+ ++ + I+ G + L G Y C A N
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENE-KYILKGSNTE--LTVRNIINSDGGPYVCRATN 173
Query: 915 CMGTTSSSAAL 925
G A L
Sbjct: 174 KAGEDEKQAFL 184
Score = 116 bits (291), Expect = 1e-29
Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 23/193 (11%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV---VEASDKYHIMADGLG 606
F + V + K G A + C+V P P ++ W + +++ ++A+
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWL-YHNEEVTTISDNRFAMLANN-- 57
Query: 607 GYSIEINYLEAVDDGEWKCVATSSS-GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
+++I + D+G ++C + G F V V +P P+ + A
Sbjct: 58 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE--RG 113
Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-----------GSYCCVAKN 714
++F C+ G P P + WF++ + ++ + Y L G+++ G Y C A N
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 173
Query: 715 VMGKAESSTQLTI 727
G+ E L +
Sbjct: 174 KAGEDEKQAFLQV 186
Score = 113 bits (285), Expect = 5e-29
Identities = 41/205 (20%), Positives = 71/205 (34%), Gaps = 34/205 (16%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV--YQLTGTSSL--- 705
F E + G C+V P P + W NEE+ + + ++L
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62
Query: 706 -------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI--EGLK 756
G Y C + + ++ N P +
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDI----------------IVIVNVPPAISMPQKSF 106
Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
+ A EE F+ + S SPEP +SWFR+ + + E++ + L + + +D
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSD 163
Query: 817 QAEWKCIATNDFGQSITSCFLKLNV 841
+ C ATN G+ FL++ V
Sbjct: 164 GGPYVCRATNKAGEDEKQAFLQVFV 188
Score = 106 bits (267), Expect = 1e-26
Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 26/197 (13%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEE--NKIYRTQHDGN 403
F + K G A ++ + +P + W ++ ++ + + + N
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA---VSWLYHNEEVTTISDNRFAMLANNN 58
Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT---KELEAILTE 460
+++ D G + C ++ V+V P + K A
Sbjct: 59 LQI---LNINKSDEGIYRCEGRVEARGEIDFRDIIVIV---NVPPAISMPQKSFNATAER 112
Query: 461 QGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAV 513
++ C+ G P P + W+++ K I+ + + L + + S G Y C A
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 172
Query: 514 NCMGAAFSTSR--VIAR 528
N G + V +
Sbjct: 173 NKAGEDEKQAFLQVFVQ 189
Score = 104 bits (260), Expect = 1e-25
Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 30/207 (14%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD--IFALTANPK--- 500
F + + +QG + C+V P P + W N+++ FA+ AN
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 501 ---DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
+ S G Y CE + + +VP PA ++
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDF--------RDIIVIVNVP--------PAISMPQKS 105
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
N A+ G C+ P P +I W+ ++E ++KY + + + +
Sbjct: 106 FNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGS---NTELTVRNIIN 161
Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVL 644
D G + C AT+ +G + A++ V
Sbjct: 162 SDGGPYVCRATNKAGEDE-KQAFLQVF 187
Score = 100 bits (250), Expect = 3e-24
Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 17/202 (8%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
F + K G A ++ + SP + + N + I NRF
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-NEEVT---------TISDNRF 51
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
+ + L I + + D G Y E+ ++ V VP A + ++ +
Sbjct: 52 A-MLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108
Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGR 419
+ G E I W+RN + +EEN+ Y + + ++ D G
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV--RNIINSDGGP 166
Query: 420 WTCLAENAVGRSHCSCELSVLV 441
+ C A N G L V V
Sbjct: 167 YVCRATNKAGEDEKQAFLQVFV 188
Score = 85.2 bits (211), Expect = 5e-19
Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 31/215 (14%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
F + K G A ++ + SP + + N + I NRF
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-NEEVT---------TISDNRF 51
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
+ + L I + + D G Y E+ ++ V VP A + ++ +
Sbjct: 52 A-MLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108
Query: 253 AVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
+ G SP I + I N + L
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRN-------------GKLIEENEKYILKGSNTE-L 154
Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+R + DGG Y A+N++G + L V Q
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 78.7 bits (194), Expect = 8e-17
Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 16/164 (9%)
Query: 77 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
+ + L I + + D G Y E+ ++ V VP A
Sbjct: 40 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 99
Query: 137 AFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
+ ++ + + G SP I + I N
Sbjct: 100 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-------------GKLIEENEKYI 146
Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
+ L +R + DGG Y A+N++G + L V Q
Sbjct: 147 LKGSNTE-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 72.1 bits (177), Expect = 2e-14
Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 34/163 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAGD--IFALTANPK------DPSSLGTYTCEAVNCMGAAFSTS 53
P P + W N+++ FA+ AN + S G Y CE
Sbjct: 28 SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFR 87
Query: 54 RVIARGQ-------------QSFLDNDDVPFN-RAQG-----------DHPIFGNRFRAI 88
+I + +++ F+ RA G I N +
Sbjct: 88 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 147
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
L +R + DGG Y A+N++G + L V Q
Sbjct: 148 KGSNTE-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 71.4 bits (175), Expect = 3e-14
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 13/90 (14%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
F E + +G + C+V P P + W E+ ++ + L
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQ 60
Query: 906 ---------GIYTCEAHNCMGTTSSSAALL 926
GIY CE ++
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDII 90
Score = 47.1 bits (112), Expect = 6e-06
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAVNCMGAAFSTS 53
G P P + W+++ K I+ + + L + + S G Y C A N G +
Sbjct: 123 SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQA 182
Query: 54 R--VIAR 58
V +
Sbjct: 183 FLQVFVQ 189
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 129 bits (326), Expect = 6e-33
Identities = 49/343 (14%), Positives = 93/343 (27%), Gaps = 55/343 (16%)
Query: 336 AKFELSVESQ---VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-------KIHWYR 385
F L + R G L + W++
Sbjct: 2 DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK 61
Query: 386 NDRKLEENKIYR---TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
ND DG + DSG + C NA S EL V
Sbjct: 62 NDSARTVPGEEETRMWAQDGALWL---LPALQEDSGTYVCTTRNASYCDKMSIELRVFEN 118
Query: 443 KAYKAPFFTKELEAILTEQGTV---SLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP 499
PF + L+ G + L ++ WYKD+ + + L+
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178
Query: 500 KD--------PSSLGTYTCEAVNCMG-AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA 550
G Y C ++ +R I +
Sbjct: 179 TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI---------ELRIKKKKEETI--- 226
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVP---PWPRSIYWYNKEGVVEASD----------- 596
P+ I ++ + A +G+ + C+V + P ++W + +E++
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286
Query: 597 KYHIMADGLGGYSIEINYLEAVDDG-EWKCVATSSSGVKQFSA 638
+Y + + + + D ++KCV ++ +
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329
Score = 127 bits (321), Expect = 3e-32
Identities = 41/303 (13%), Positives = 88/303 (29%), Gaps = 57/303 (18%)
Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPG---DVYQLTGTSSL----------GSYCCVAK 713
V + P L W K++ + +L G+Y C +
Sbjct: 42 QVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTR 101
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
N + S +L + + + G+ C +
Sbjct: 102 NASYCDKMSIELRVFENTDAFLPFIS----YPQILTLSTSGVLVCP-------DLSEFTR 150
Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
+ K+ W++D + + + + G HL +H + + D ++C+ T
Sbjct: 151 DKTDVKIQWYKDSLLLDKDNEKFLS--VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQY 208
Query: 834 SCFLKLNV----PKHYKKPKFLEELKAV-LSEGGAVNLECKVI---GVPQPTLKWFK-DG 884
+ + + K P + LK + S G + + CKV G P T+ W+ +
Sbjct: 209 NITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAND 268
Query: 885 RELKAGDIHKIIS-----------GEDGTCCLGI-----------YTCEAHNCMGTTSSS 922
+++ ++ L + C HN + +
Sbjct: 269 THIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328
Query: 923 AAL 925
+
Sbjct: 329 TTV 331
Score = 125 bits (316), Expect = 1e-31
Identities = 55/337 (16%), Positives = 97/337 (28%), Gaps = 47/337 (13%)
Query: 229 AKFELSVESQ---VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS 285
F L + R G L ++ I +
Sbjct: 2 DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALR---CPQVPYWLWASVSPRINLT 58
Query: 286 -FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+ + G + L + ++D G Y T N S EL V
Sbjct: 59 WHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFE 117
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARL-----LVEIRSPTEIKIHWYRNDRKLEENKIYRTQ 399
FI + + + T L R T++KI WY++ L+++
Sbjct: 118 NTDAFLPFIS--YPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175
Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC----ELSVLVPKAYKAPFFTKELE 455
G + + V+L D+G + C+ A + EL + K P L+
Sbjct: 176 VRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK 234
Query: 456 AILTEQG-TVSLECKVM---GIPTPQLIWYKDNKK----------IKAGDIFALTANPKD 501
I G +++ CKV G P ++W+ N + G + N ++
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNEN 294
Query: 502 P--SSL-----------GTYTCEAVNCMGAAFSTSRV 525
L + C N + + V
Sbjct: 295 YIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 122 bits (306), Expect = 3e-30
Identities = 47/336 (13%), Positives = 97/336 (28%), Gaps = 56/336 (16%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVP-------PWPRSIYWY--NKEGVVEASDKYHI 600
+ + G L C + P ++ W+ + V ++ +
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSARTVPGEEETRM 76
Query: 601 MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
A ++ + D G + C ++S + S + V + P
Sbjct: 77 WAQD---GALWLLPALQEDSGTYVCTTRNASYCDKMSIE-LRVFENTDAFLPFISYPQIL 132
Query: 661 VMTDDGLV---SFECKVVGFPTPTLQWFKDNEELKPGDVY--QLTGTSSL---------- 705
++ G++ +QW+KD+ L + + GT+ L
Sbjct: 133 TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDA 192
Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
G Y CV + + +I E ++ P I LK+ A++
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSI---------ELRIKKKKEETIPVIISPLKTISASLGSR 243
Query: 766 FKFTVQVSI---SPEPKVSWFRDDQQVVESD------------NVKILKETLGVCHLKIH 810
+V + +P + W+ + +ES E L
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303
Query: 811 ALEVADQ-AEWKCIATNDFGQSITSCFLKLNVPKHY 845
+ D ++KC+ N +K H+
Sbjct: 304 PVTREDLHMDFKCVVHNTLSFQTLRTTVK--EHHHH 337
Score = 108 bits (271), Expect = 1e-25
Identities = 45/343 (13%), Positives = 95/343 (27%), Gaps = 40/343 (11%)
Query: 122 AKFELSVESQ---VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS 178
F L + R G L ++ I +
Sbjct: 2 DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALR---CPQVPYWLWASVSPRINLT 58
Query: 179 -FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+ + G + L + ++D G Y T N S EL V
Sbjct: 59 WHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFE 117
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFG 296
FI + + + T L+ ++ + ++ +
Sbjct: 118 NTDAFLPFIS--YPQILTLSTSGVLVCP-----DLSEFTRDKTDVKIQWYK--DSLLLDK 168
Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-----PDAPA 351
+ + ++ G T L + V +D G Y + S+E ++ P
Sbjct: 169 DNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPV 228
Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPT---EIKIHWYRNDRKL-----------EENKIYR 397
I L I+ +G+R + ++ T + W+ + E +
Sbjct: 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 398 TQHDGNFYFIDL--SSVSLFDSGRW-TCLAENAVGRSHCSCEL 437
++++ N+ + L V+ D C+ N + +
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 105 bits (263), Expect = 1e-24
Identities = 43/280 (15%), Positives = 85/280 (30%), Gaps = 27/280 (9%)
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
+ G + L + ++D G Y T N S EL V
Sbjct: 64 SARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF 122
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFRA 194
FI + + + T L+ ++ + ++ + + +
Sbjct: 123 LPFIS--YPQILTLSTSGVLVCP-----DLSEFTRDKTDVKIQWYK--DSLLLDKDNEKF 173
Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-----PDAPAFIRRL 249
++ G T L + V +D G Y + S+E ++ P I L
Sbjct: 174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPL 233
Query: 250 HDIAVKVGTRARLLVEIR------SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 303
I+ +G+R + ++ T + + N+T S G + + N
Sbjct: 234 KTISASLGSRLTIPCKVFLGTGTPLTTMLW--WTANDTHIESAYPGGRVTEGPRQEYSEN 291
Query: 304 RDGRTE--LNIRRVRRDD-GGRYSVTASNESGYSTAKFEL 340
+ E L V R+D + N + T + +
Sbjct: 292 NENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 99.0 bits (246), Expect = 2e-22
Identities = 25/200 (12%), Positives = 46/200 (23%), Gaps = 19/200 (9%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFT-------VQVSISPEPKVSWFRDDQQVVESDNVK 796
K E + S+SP ++W ++D +
Sbjct: 14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE 73
Query: 797 ILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA 856
+ L + D + C N S L++ P
Sbjct: 74 T-RMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQIL 132
Query: 857 VLSEGGAV---NLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-------- 905
LS G + +L ++W+KD L + + +
Sbjct: 133 TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDA 192
Query: 906 GIYTCEAHNCMGTTSSSAAL 925
G Y C +
Sbjct: 193 GYYRCVLTFAHEGQQYNITR 212
Score = 92.8 bits (230), Expect = 2e-20
Identities = 42/284 (14%), Positives = 79/284 (27%), Gaps = 55/284 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
P L W+K++ +D +L GTY C N
Sbjct: 51 VSPRINLTWHKNDSARTVPGEEETRMWAQD-GALWLLPALQEDSGTYVCTTRNASYCDKM 109
Query: 52 TSRV-IARGQQSFLDNDDVPFNRAQG---------------------------DHPIFGN 83
+ + + +FL P + +
Sbjct: 110 SIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKD 169
Query: 84 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-----PDAPAF 138
+ ++ G T L + V +D G Y + S+E ++ P
Sbjct: 170 NEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229
Query: 139 IRRLHDIAVKVGTRARLLVEIR------SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
I L I+ +G+R + ++ T + + N+T S G +
Sbjct: 230 ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLW--WTANDTHIESAYPGGRVTEGPRQE 287
Query: 193 RAINRDGRTE--LNIRRVRRDD-GGRYSVTASNESGYSTAKFEL 233
+ N + E L V R+D + N + T + +
Sbjct: 288 YSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 126 bits (317), Expect = 1e-32
Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 26/204 (12%)
Query: 748 APKFIEGL----KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
AP + K +F + +P P +SW ++ ++ + +K
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGG 862
L + ++ +D+ + C+ N FG + L + ++ G
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 130
Query: 863 AVNLECKVIGVPQPTLKWFK-----------DGRELKAGDIHKIISGEDGTCCL------ 905
V CKV QP ++W K DG I + L
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190
Query: 906 ----GIYTCEAHNCMGTTSSSAAL 925
G Y C A N +G + L
Sbjct: 191 ERDGGEYLCRATNFIGVAEKAFWL 214
Score = 115 bits (289), Expect = 6e-29
Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 43/228 (18%)
Query: 651 KPRFVESLKAVMTD-----DGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTG 701
P + + V F C G PTP++ W K+ E + +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF 751
SL G+Y CV +N G + L + + H +
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-------------RPILQ 117
Query: 752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR-----------DDQQVVESDNVKILKE 800
+ A + + +F +V +P + W + D V I +
Sbjct: 118 AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISES 177
Query: 801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKP 848
L++ + D E+ C ATN G + + +L ++ P+ ++
Sbjct: 178 VEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225
Score = 112 bits (281), Expect = 6e-28
Identities = 44/221 (19%), Positives = 71/221 (32%), Gaps = 36/221 (16%)
Query: 336 AKFELSVESQVPDAPAFIR----RLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDR 388
A + V++ AP + R +AV R +P+ I W +N R
Sbjct: 1 ADPDTGVDTG---APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS---ISWLKNGR 54
Query: 389 KLE-ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKA 447
+ E++I + + + + SV D G +TC+ EN G + L VL ++
Sbjct: 55 EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP 114
Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYK-----------DNKKIKAGDIFAL 495
G V CKV P + W K D +
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174
Query: 496 TANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
+ + + L G Y C A N +G A +
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
Score = 107 bits (268), Expect = 4e-26
Identities = 45/234 (19%), Positives = 69/234 (29%), Gaps = 47/234 (20%)
Query: 447 APFFTKELEAILTEQ-----GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
AP++T+ TV C G PTP + W K+ ++ +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 502 PSSL----------GTYTCEAVNCMGAAFSTS--RVIARGQQSFLDNDDVPFNSLMPPGP 549
SL G YTC N G+ T V+ R P
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER-----------------SPHR 113
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-----------NKEGVVEASDKY 598
+ N A +G+ C+V P I W K
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKS 172
Query: 599 HIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
I + + + D GE+ C AT+ GV + A ++ V P+ +
Sbjct: 173 WISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE-KAFWLSVHGPRAAEEE 225
Score = 103 bits (257), Expect = 1e-24
Identities = 46/259 (17%), Positives = 81/259 (31%), Gaps = 41/259 (15%)
Query: 229 AKFELSVESQVPDAPAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTI 282
A + V++ AP + R +AV R +PT I +
Sbjct: 1 ADPDTGVDTG---APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREF 56
Query: 283 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
R G R + L + V D G Y+ N+ G + L V
Sbjct: 57 RGEHRIGGIK----------LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
Query: 343 ESQVPDAP-AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRK------------ 389
+ P P + +G+ ++ S + I W ++
Sbjct: 107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 166
Query: 390 LEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPF 449
+ K + ++ + L++VS D G + C A N +G + + LSV P
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP-----RA 221
Query: 450 FTKELEAILTEQGTVSLEC 468
+EL + S+
Sbjct: 222 AEEEL---VEADEAGSVHH 237
Score = 85.0 bits (210), Expect = 2e-18
Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 3/172 (1%)
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP-AFIRRLHD 144
R + L + V D G Y+ N+ G + L V + P P +
Sbjct: 64 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN 123
Query: 145 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN--RFRAINRDGRTE 202
+G+ ++ S + Q+ + + S P + + + +
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 254
L + V DGG Y A+N G + F LSV + +V
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSV 235
Score = 75.4 bits (185), Expect = 4e-15
Identities = 36/195 (18%), Positives = 57/195 (29%), Gaps = 49/195 (25%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G PTP + W K+ ++ + SL G YTC N G+
Sbjct: 41 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100
Query: 52 TS--RVIARGQ------------QSFLDNDDVPFN-RAQGD------------------- 77
T V+ R Q+ + DV F+ + D
Sbjct: 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 160
Query: 78 -----HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
+ + + + + L + V DGG Y A+N G + F LSV
Sbjct: 161 PDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220
Query: 133 PDAPAFIRRLHDIAV 147
+ +V
Sbjct: 221 AAEEELVEADEAGSV 235
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 125 bits (315), Expect = 2e-32
Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 27/209 (12%)
Query: 743 LTNNKAPKFIEGLK----SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL 798
N +AP + K KF +P P + W ++ ++ + +
Sbjct: 10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 69
Query: 799 KETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AV 857
K L + ++ +D+ + C+ N++G + L + ++ A
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 129
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFK-----------DGRELKAGDIHKIISGEDGTCCL- 905
GG V CKV QP ++W K DG H I+ L
Sbjct: 130 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGIN-SSNAEVLA 188
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
G Y C+ N +G + SA L
Sbjct: 189 LFNVTEADAGEYICKVSNYIGQANQSAWL 217
Score = 115 bits (289), Expect = 6e-29
Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 44/236 (18%)
Query: 647 KNYRKPRFVESLKAVMTD-----DGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VY 697
N R P + + K V F C G P PT++W K+ +E K
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 698 QLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNK 747
SL G+Y CV +N G + L + + H +
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH-------------R 117
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN------VKILKE- 800
+ V + +F +V +P + W + ++ +K+LK
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 801 ---TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE 853
+ L + + AD E+ C +N GQ+ S +L + + P +E
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ--APGREKE 231
Score = 112 bits (282), Expect = 4e-28
Identities = 42/216 (19%), Positives = 72/216 (33%), Gaps = 32/216 (14%)
Query: 340 LSVESQVPDAPAFIRRL----HDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLE- 391
+S S AP + AV + PT + W +N ++ +
Sbjct: 6 VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPT---MRWLKNGKEFKQ 62
Query: 392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT 451
E++I + + + + SV D G +TC+ EN G + + L V+ ++
Sbjct: 63 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQA 122
Query: 452 KELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAG---DIFALTANPK------- 500
T G V CKV P + W K +K + D K
Sbjct: 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182
Query: 501 DPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
+ L G Y C+ N +G A ++ +
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
Score = 106 bits (266), Expect = 5e-26
Identities = 45/261 (17%), Positives = 76/261 (29%), Gaps = 58/261 (22%)
Query: 423 LAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA-----ILTEQGTVSLECKVMGIPTPQ 477
+AE+ V + +AP++T + + TV C G P P
Sbjct: 1 MAEDFVSEN----------SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPT 50
Query: 478 LIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS--RV 525
+ W K+ K+ K SL G YTC N G+ T V
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110
Query: 526 IARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYW 585
+ R + N +G C+V P I W
Sbjct: 111 VER-----------------SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQW 152
Query: 586 Y----------NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQ 635
+G+ H + + + + D GE+ C ++ G
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212
Query: 636 FSAAYVHVLMPKNYRKPRFVE 656
+A++ VL + + P +
Sbjct: 213 -QSAWLTVLPKQ--QAPGREK 230
Score = 103 bits (258), Expect = 7e-25
Identities = 43/239 (17%), Positives = 77/239 (32%), Gaps = 31/239 (12%)
Query: 233 LSVESQVPDAPAFIRRL----HDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSF 286
+S S AP + AV + +P ++ +
Sbjct: 6 VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEH 64
Query: 287 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 346
R G R+ L + V D G Y+ NE G + L V +
Sbjct: 65 RIGGYK----------VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 114
Query: 347 PDAP-AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI---------- 395
P + + VG + ++ S + I W ++ K
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174
Query: 396 -YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453
+ + N + L +V+ D+G + C N +G+++ S L+VL + +AP KE
Sbjct: 175 KHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ--QAPGREKE 231
Score = 96.1 bits (239), Expect = 2e-22
Identities = 41/237 (17%), Positives = 67/237 (28%), Gaps = 20/237 (8%)
Query: 126 LSVESQVPDAPAFIRRL----HDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSF 179
+S S AP + AV + +P ++ +
Sbjct: 6 VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEH 64
Query: 180 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 239
R G R+ L + V D G Y+ NE G + L V +
Sbjct: 65 RIGGYK----------VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 114
Query: 240 PDAP-AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GN 297
P + + VG + ++ S + Q+ + S P
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174
Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 354
+ IN L + V D G Y SN G + L+V + AP +
Sbjct: 175 KHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK-QQAPGREK 230
Score = 88.4 bits (219), Expect = 1e-19
Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 3/164 (1%)
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP-AFIRRLHD 144
R+ L + V D G Y+ NE G + L V + P +
Sbjct: 68 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPAN 127
Query: 145 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTEL 203
+ VG + ++ S + Q+ + S P + IN L
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187
Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
+ V D G Y SN G + L+V + AP +
Sbjct: 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK-QQAPGREK 230
Score = 77.6 bits (191), Expect = 5e-16
Identities = 37/187 (19%), Positives = 52/187 (27%), Gaps = 49/187 (26%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P + W K+ K+ K SL G YTC N G+
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 52 TS--RVIARGQ------------QSFLDNDDVPFN-RAQGD------------------- 77
T V+ R + S + DV F + D
Sbjct: 105 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164
Query: 78 ----HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
+ + IN L + V D G Y SN G + L+V +
Sbjct: 165 PDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK-Q 223
Query: 134 DAPAFIR 140
AP +
Sbjct: 224 QAPGREK 230
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 122 bits (307), Expect = 6e-32
Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 15/186 (8%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
K + + + K V EP + W +D V D + I + E +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVN 865
L + ++E +D + C + I S + L V P F E K +
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEI-SQPVWLTV---EGVPFFTVEPKDLAVPPNAPFQ 117
Query: 866 LECKVIGVPQP-TLKWFKDGRELKAGDIH----KIISGEDGTCCLGIYTCEAHNCMGTTS 920
L C+ +G P+P T+ W++ ++ + +++CEAHN G S
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQS----TMFSCEAHNLKGLAS 173
Query: 921 SSAALL 926
S A +
Sbjct: 174 SRTATV 179
Score = 110 bits (276), Expect = 8e-28
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 10/183 (5%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
+ + V G +L + E I W ++ ++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 409 L--SSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFTKELEAILTEQG-TV 464
L SV D+GR+ C E+ L+V PFFT E + +
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-----PFFTVEPKDLAVPPNAPF 116
Query: 465 SLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
L C+ +G P P I W++ KI N + ++CEA N G A S +
Sbjct: 117 QLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRT 176
Query: 524 RVI 526
+
Sbjct: 177 ATV 179
Score = 108 bits (271), Expect = 4e-27
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 14/187 (7%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG-LGGY 608
+ + G L C V P I W VV+ D+ +I
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
+ + +E D G + C + ++ V P F K +
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-----PFFTVEPKDLAVPPNAP 115
Query: 668 VSFECKVVGFPTP-TLQWFKDNEELKPGD----VYQLTGTSSLGSYCCVAKNVMGKAESS 722
C+ VG P P T+ W++ ++ V +TG + + C A N+ G A S
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
Query: 723 T-QLTIE 728
T + ++
Sbjct: 176 TATVHLQ 182
Score = 104 bits (262), Expect = 7e-26
Identities = 34/210 (16%), Positives = 60/210 (28%), Gaps = 43/210 (20%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
+ QG V L C V G+ P + W KD ++ D + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 506 -----------GTYTCEAVNCMGAAFSTS-RVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
G Y C+ + S + G P F
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG--------------------VPFF 101
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
E +++ L C+ + PP P +I W+ + I + +
Sbjct: 102 TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWW-RGTT-------KIGGPAPSPSVLNVT 153
Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+ + C A + G+ A VH+
Sbjct: 154 GVT--QSTMFSCEAHNLKGLASSRTATVHL 181
Score = 101 bits (252), Expect = 1e-24
Identities = 35/207 (16%), Positives = 61/207 (29%), Gaps = 45/207 (21%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL 705
+ + + + G V C V G P +QW KD ++ D V + L
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
G Y C ++ S + LT P F
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQP-----------------VWLTVEGVPFFTVEP 105
Query: 756 KSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
K N F+ + + PEP + W+R ++ + ++ V
Sbjct: 106 KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV----------LNVTGV 155
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNV 841
+ C A N G +S +++
Sbjct: 156 TQSTMFSCEAHNLKG-LASSRTATVHL 181
Score = 81.8 bits (202), Expect = 7e-18
Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 27/197 (13%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
+ + V G +L + +I+ D + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQ---------LYI 51
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHD 358
+ L+++ V R D GRY + + L+VE P F D
Sbjct: 52 PVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG----VPFFTVEPKD 107
Query: 359 IAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
+AV +L E P + I W+R K+ + L+ + S
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV---------LNVTGVTQS 158
Query: 418 GRWTCLAENAVGRSHCS 434
++C A N G +
Sbjct: 159 TMFSCEAHNLKGLASSR 175
Score = 65.2 bits (159), Expect = 3e-12
Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 49/213 (23%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
+ + V G +L + +I+ D + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQ---------LYI 51
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHD 251
+ L+++ V R D GRY + + L+VE P F D
Sbjct: 52 PVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG----VPFFTVEPKD 107
Query: 252 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-HPIF------GNRFRAINR 304
+AV +L C+ A G P+ + I
Sbjct: 108 LAVPPNAPFQL----------SCE------------AVGPPEPVTIVWWRGTTK---IGG 142
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
+ + +S A N G ++++
Sbjct: 143 PAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
Score = 64.0 bits (156), Expect = 9e-12
Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 37/155 (23%)
Query: 84 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRL 142
+ L+++ V R D GRY + + L+VE P F
Sbjct: 50 YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG----VPFFTVEP 105
Query: 143 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-HPIF------GNRFRAI 195
D+AV +L C+ A G P+ + I
Sbjct: 106 KDLAVPPNAPFQL----------SCE------------AVGPPEPVTIVWWRGTTK---I 140
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
+ + +S A N G ++++
Sbjct: 141 GGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
Score = 60.6 bits (147), Expect = 1e-10
Identities = 21/151 (13%), Positives = 41/151 (27%), Gaps = 32/151 (21%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVNCMGAAF 50
G+ P + W KD ++ D + + + G Y C+ +
Sbjct: 28 GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 87
Query: 51 STS-RVIARGQQSFLD---------NDDVPFN-RAQGD-HPIF------GNRFRAINRDG 92
S + G F N + A G P+ + I
Sbjct: 88 SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK---IGGPA 144
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAK 123
+ + +S A N G ++++
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
Score = 45.6 bits (108), Expect = 2e-05
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 2 GIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
G P P I W++ KI N + ++CEA N G A S + +
Sbjct: 124 GPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATV 179
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 121 bits (304), Expect = 2e-31
Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 20/193 (10%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFRDDQQVVESDN--VKILKETLG 803
+ + + +V E F QV+ + +SWF + + + + + ++
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGG 862
L I+ + D +KC+ T + G + + + + + ++K F EG
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDG-TQSEATVNVKI---FQKLMFKNAPTPQEFKEGE 116
Query: 863 AVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEA 912
+ C V+ PT+ W GR++ + I + L G Y CE
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCEG 174
Query: 913 HNCMGTTSSSAAL 925
+ +
Sbjct: 175 RILARGEINFKDI 187
Score = 114 bits (287), Expect = 3e-29
Identities = 31/193 (16%), Positives = 61/193 (31%), Gaps = 20/193 (10%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGY 608
+ +G S CQV + I W+ N E + + ++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL- 667
++ I D G +KCV T+ G + + V + F + +G
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-----LMFKNAPTPQEFKEGED 117
Query: 668 VSFECKVVGFPTPTLQWFKDNEEL--KPGDVYQLTGTSSL----------GSYCCVAKNV 715
C VV PT+ W ++ K + + + L G+Y C + +
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 716 MGKAESSTQLTIE 728
+ + +
Sbjct: 178 ARGEINFKDIQVI 190
Score = 105 bits (263), Expect = 5e-26
Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 37/210 (17%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFP-TPTLQWFKDN-EELKPGD-----VYQLTG 701
R + G F C+V G + WF N E+L P V+
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF 751
+S+L G Y CV G +T + + + F
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT-----------------VNVKIFQKLMF 103
Query: 752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHA 811
+ E+ V S P + W + V+ +V+ + + L+I
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRG 161
Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNV 841
++ D+ ++C I +++ V
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 104 bits (260), Expect = 1e-25
Identities = 28/194 (14%), Positives = 62/194 (31%), Gaps = 27/194 (13%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVE-IRSPTEIKIHWYRNDRKL---EENKIYRTQHDGNFY 405
+ VG L + + I W+ + + + +I +D +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 406 FIDLSSVSLFDSGRWTCLAENAVG-RSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-T 463
+ + + ++ D+G + C+ G +S + + + F ++G
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-----LMFKNAPTPQEFKEGED 117
Query: 464 VSLECKVMGIPTPQLIWYKDNKKI--KAGDIFALTANPKDPSSL----------GTYTCE 511
+ C V+ P +IW + + K F + +N + L GTY CE
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN----NYLQIRGIKKTDEGTYRCE 173
Query: 512 AVNCMGAAFSTSRV 525
+ +
Sbjct: 174 GRILARGEINFKDI 187
Score = 89.1 bits (221), Expect = 2e-20
Identities = 36/205 (17%), Positives = 57/205 (27%), Gaps = 22/205 (10%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFR 300
+ VG CQ + F G + N+ R
Sbjct: 3 LQVDIVPSQGEISVGESKFF----------LCQVAGDAKDKDISWFSPNG-EKLSPNQQR 51
Query: 301 ---AINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRL 356
N D + L I DD G Y + E G S A + + F
Sbjct: 52 ISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ----KLMFKNAP 107
Query: 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
K G A ++ ++ S I W R + K R N ++ + + D
Sbjct: 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTD 166
Query: 417 SGRWTCLAENAVGRSHCSCELSVLV 441
G + C ++ V+V
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIV 191
Score = 88.7 bits (220), Expect = 4e-20
Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 45/217 (20%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLI-WYKDNKKI--KAGDIFALTANPKD 501
+ G + C+V G + I W+ N + ++ N D
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 502 PSSL----------GTYTCEAVNCMGAAFS-TSRVIARGQQSFLDNDDVPFNSLMPPGPA 550
S+L G Y C G T V
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF--------------------QK 100
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG---VVEASDKYHIMADGLGG 607
+F + K G A++ C V+ P +I W +G +++ ++ ++++
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWK-HKGRDVILKKDVRFIVLSNN--- 155
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
++I ++ D+G ++C + + + + V+
Sbjct: 156 -YLQIRGIKKTDEGTYRCEGRILAR-GEINFKDIQVI 190
Score = 71.4 bits (175), Expect = 3e-14
Identities = 31/165 (18%), Positives = 48/165 (29%), Gaps = 23/165 (13%)
Query: 78 HPIFGNRFR---AINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVP 133
+ N+ R N D + L I DD G Y + E G S A + +
Sbjct: 43 EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ--- 99
Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
F K G A ++ ++ S I + G I
Sbjct: 100 -KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK------------GRDVILKKD 146
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
R I L IR +++ D G Y + ++ V
Sbjct: 147 VRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 61.4 bits (149), Expect = 8e-11
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 20/120 (16%)
Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQ-PTLKWFK-DGRELKAGD-IHKIISGEDG 901
+ + +S G + C+V G + + WF +G +L ++ +D
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 902 TCCL----------GIYTCEAHNCMGTTSSSAALL------GFEDKSQIEKAEEGKKALI 945
+ L GIY C GT S + + F++ ++ +EG+ A+I
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Score = 57.5 bits (139), Expect = 2e-09
Identities = 22/161 (13%), Positives = 41/161 (25%), Gaps = 36/161 (22%)
Query: 4 PTPQLIWYKDNKKI--KAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
+ W+ N + ++ N D S+L G Y C G
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 52 TS---RVIAR-------GQQSFLDNDDVPFN-RAQGD-----------HPI-FGNRFRAI 88
+ ++ + Q F + +D + R I
Sbjct: 91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
L IR +++ D G Y + ++ V
Sbjct: 151 VLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 121 bits (304), Expect = 4e-31
Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 32/197 (16%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
+ K +S + K + + P + WF+ ++++ +
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT----------SE 66
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV------------PKHYKKPKFLEEL 854
L +A+ V D + C N+F S + +L+V K + E
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFT-FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125
Query: 855 K-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGEDGTCCLGIYT 909
L G + L+C +G P P +WFK+ L + E G Y
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQ----GTYW 181
Query: 910 CEAHNCMGTTSSSAALL 926
C +N + S +
Sbjct: 182 CHVYNDRDSQDSKKVEI 198
Score = 118 bits (298), Expect = 3e-30
Identities = 40/231 (17%), Positives = 70/231 (30%), Gaps = 25/231 (10%)
Query: 632 GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEE 690
G + L+P R + + ++ G V C+ G P QWFK N+E
Sbjct: 2 GSSHHHHHHSSGLVP---RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE 58
Query: 691 LKPGDVYQLT----GTSSLGSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTN 745
+ G+ +L G Y C N S QL + DI +
Sbjct: 59 IPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD---GVS 115
Query: 746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
+ S + SP P WF+++ +
Sbjct: 116 ESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 166
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV--PKHYKKPKFLEEL 854
+ +++ Q + C ND S S +++ + + P E+
Sbjct: 167 -YMVPYVDLEHQGTYWCHVYNDRD-SQDSKKVEIIIDELNNLGHPDNKEQT 215
Score = 111 bits (278), Expect = 1e-27
Identities = 46/234 (19%), Positives = 72/234 (30%), Gaps = 26/234 (11%)
Query: 428 VGRSHC-SCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNK 485
+G SH S LVP+ T E+ G V L C+ G P Q W+K NK
Sbjct: 1 MGSSHHHHHHSSGLVPRG---SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNK 57
Query: 486 KIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPFN 542
+I G+ L N G Y C N FS V + +
Sbjct: 58 EIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIP-------ESFQRS 110
Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA 602
E + K G++ +L+C + P P W+ K + +
Sbjct: 111 VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWF-KNELPLTHE------ 162
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
+ Y++ G + C + + + + N P E
Sbjct: 163 ---TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKE 213
Score = 109 bits (275), Expect = 3e-27
Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 21/205 (10%)
Query: 334 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393
S+ VP AV G +L ++ W++ ++++
Sbjct: 3 SSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN- 61
Query: 394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC-ELSVLVP---------- 442
+ F ++V + D+G + C N +L V
Sbjct: 62 -----GNTSELIF---NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDG 113
Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
+ E + G T+ L+C +G P P W+K+ + D
Sbjct: 114 VSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVD 173
Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVI 526
GTY C N + S I
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEI 198
Score = 88.8 bits (220), Expect = 6e-20
Identities = 34/248 (13%), Positives = 54/248 (21%), Gaps = 53/248 (21%)
Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 286
S+ VP AV G +L C
Sbjct: 3 SSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLC----------C------------ 40
Query: 287 RAQGD-HPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFE 339
RA G + I +EL V D G Y +N + + +
Sbjct: 41 RATGHPFVQYQWFKMNKE---IPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97
Query: 340 LSV-----------ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR 388
L V + + G+ L W++N+
Sbjct: 98 LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 157
Query: 389 KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVPKAYKA 447
L Y + V L G + C N E+ +
Sbjct: 158 PLTHE-------TKKLYMV--PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGH 208
Query: 448 PFFTKELE 455
P ++
Sbjct: 209 PDNKEQTT 216
Score = 71.1 bits (174), Expect = 7e-14
Identities = 35/259 (13%), Positives = 56/259 (21%), Gaps = 77/259 (29%)
Query: 120 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 179
S+ VP AV G +L C
Sbjct: 3 SSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLC----------C------------ 40
Query: 180 RAQGD-HPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFE 232
RA G + I +EL V D G Y +N + + +
Sbjct: 41 RATGHPFVQYQWFKMNKE---IPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97
Query: 233 LSV-----------ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNT 281
L V + + G+ L +C
Sbjct: 98 LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVL----------QCV------ 141
Query: 282 IPFSFRAQGDHPI------FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST 335
A G PI + + + + V + G Y N+
Sbjct: 142 ------AVG-SPIPHYQWFKNEL--PLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQD 192
Query: 336 AKFELSVESQVPDAPAFIR 354
+K VE + +
Sbjct: 193 SK---KVEIIIDELNNLGH 208
Score = 67.2 bits (164), Expect = 1e-12
Identities = 25/168 (14%), Positives = 42/168 (25%), Gaps = 32/168 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS-------- 53
G P Q W+K NK+I G+ L N G Y C N FS
Sbjct: 44 GHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDI 103
Query: 54 RVIARGQQSFLDNDDVPFNRAQGDHPI-FGNRFR--------------------AINRDG 92
+ + + + G+ + +
Sbjct: 104 PESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET 163
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
+ + V + G Y N+ +K VE + +
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK---KVEIIIDELNNLGH 208
Score = 64.1 bits (156), Expect = 2e-11
Identities = 24/180 (13%), Positives = 43/180 (23%), Gaps = 46/180 (25%)
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSV-----------ESQVP 133
+ I +EL V D G Y +N + + +L V +
Sbjct: 57 KEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI------ 187
+ G+ L +C A G PI
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVL----------QCV------------AVG-SPIPHYQWF 153
Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
+ + + + V + G Y N+ +K VE + +
Sbjct: 154 KNEL--PLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK---KVEIIIDELNNLGH 208
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 123 bits (309), Expect = 5e-31
Identities = 43/266 (16%), Positives = 78/266 (29%), Gaps = 30/266 (11%)
Query: 283 PFSFRAQGDHPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
+ R G+ + + + + L+ + G Y T + +A
Sbjct: 21 TVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA 80
Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRND-RKLEENK 394
L V + P P + ++ V A L L+ E + R R L +
Sbjct: 81 IHLYV--KDPARP-WNVLAQEVVVFEDQDALLPCLLTDPVL-EAGVSLVRVRGRPLMRHT 136
Query: 395 IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKA-PFFTKE 453
Y F + S + C A GR S + + V K P T
Sbjct: 137 NYSFSPWHGFT---IHRAKFIQSQDYQCSALMG-GRKVMSISIRLKVQKVIPGPPALTLV 192
Query: 454 LEAILTEQG-TVSLECKVMGIPTPQLIWYK-DNKKIKAGDIFALTANPKDP-SSL----- 505
++ +G + C + ++ + +N K+ N +L
Sbjct: 193 PAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQV 252
Query: 506 -----GTYTCEAVNCMGAAFSTSRVI 526
G Y+C A N G ++
Sbjct: 253 DFQHAGNYSCVASNVQGKHSTSMFFR 278
Score = 122 bits (308), Expect = 6e-31
Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 29/279 (10%)
Query: 176 PFSFRAQGDHPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
+ R G+ + + + + L+ + G Y T + +A
Sbjct: 21 TVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA 80
Query: 231 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQ---FDLNNTIPFSFR 287
L V + P P + ++ V + C L + R
Sbjct: 81 IHLYV--KDPARP-WNVLAQEVVVFED----------QDALLPCLLTDPVLEAGV-SLVR 126
Query: 288 AQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQV 346
+G + + G I R + Y +A + L V+ +
Sbjct: 127 VRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI 183
Query: 347 PDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
P PA ++ G A+++ + N+ KL + ++
Sbjct: 184 PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQK 243
Query: 406 FIDL--SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ L V +G ++C+A N G+ S V+
Sbjct: 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282
Score = 115 bits (288), Expect = 3e-28
Identities = 45/312 (14%), Positives = 80/312 (25%), Gaps = 54/312 (17%)
Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKK----IKAGDIFALTANPKDP 502
P + ++ + G TV+L C G + W G L+ N
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTNNATF 60
Query: 503 SSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKA 562
+ GTY C + + V PA + + V
Sbjct: 61 QNTGTYRCTEPGDPLGGSAAIHLY------------VK-------DPARPWNVLAQEVVV 101
Query: 563 KIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEINYLEAVDDG 621
A+L C + P + G + Y I+ + +
Sbjct: 102 FEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH----GFTIHRAKFIQSQ 157
Query: 622 EWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTP 680
+++C A + + V P ++ G C
Sbjct: 158 DYQCSALMGGRKVMSISIRLKVQKVIPG-PPALTLVPAELVRIRGEAAQIVCSASSVDVN 216
Query: 681 TLQWFKDNEELKPGD------VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQ 724
+ + N + +L G+Y CVA NV GK +S
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276
Query: 725 LTIED---IRNH 733
+ + +H
Sbjct: 277 FRVVESAGNSHH 288
Score = 112 bits (282), Expect = 2e-27
Identities = 43/278 (15%), Positives = 79/278 (28%), Gaps = 42/278 (15%)
Query: 86 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 144
+ DG + L+ + G Y T + +A L V + P P + +
Sbjct: 42 WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV--KDPARP-WNVLAQE 98
Query: 145 IAVKVGTRARLLVEIRSPTEIKCQ---FDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
+ V + C L + R +G + + G
Sbjct: 99 VVVFED----------QDALLPCLLTDPVLEAGV-SLVRVRGRPLMRHTNYSFSPWHG-- 145
Query: 202 ELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
I R + Y +A + L V+ +P PA ++ G A
Sbjct: 146 -FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAA 204
Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRRVR 316
+++ + + F Q ++ ++ + R + LN+ +V
Sbjct: 205 QIVCSAS-----------SVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVD 253
Query: 317 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 354
G YS ASN G + V A
Sbjct: 254 FQHAGNYSCVASNVQGKHSTSMFFRVV-----ESAGNS 286
Score = 111 bits (278), Expect = 6e-27
Identities = 44/301 (14%), Positives = 82/301 (27%), Gaps = 53/301 (17%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
P S+ ++ G V+ C G +++W +Y +S L
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPP--SPHWTLYSDGSSSILSTNN 57
Query: 706 ------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
G+Y C ++ L ++D A + +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAAIHLYVKD-----------------PARPWNVLAQEVV 100
Query: 760 ATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
+++ ++ E VS R + + G IH +
Sbjct: 101 VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQ 157
Query: 819 EWKCIATNDFGQSITSCFLKLNV-PKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQP 876
+++C A G+ + S ++L V P V G A + C V
Sbjct: 158 DYQCSALMG-GRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVN 216
Query: 877 T-LKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMGTTSSSAA 924
+ + +L + G Y+C A N G S+S
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276
Query: 925 L 925
Sbjct: 277 F 277
Score = 103 bits (257), Expect = 4e-24
Identities = 42/303 (13%), Positives = 83/303 (27%), Gaps = 44/303 (14%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
P+ V + K G + L C S+ W S + + +DG +
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVG-----NGSVEWDGPP-----SPHWTLYSDGSSS-IL 53
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSF 670
N + G ++C +A +++V P +P V + + V+ +D
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGS-AAIHLYVKDP---ARPWNVLAQEVVVFEDQDALL 109
Query: 671 ECKVVG-FPTPTLQWFK-DNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMGK 718
C + + + L Y + Y C A K
Sbjct: 110 PCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRK 169
Query: 719 AESST-QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPE 777
S + +L ++ P E + S
Sbjct: 170 VMSISIRLKVQK--------------VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDV 215
Query: 778 PK-VSWFRDDQQVVESDNVKILKETLGVCH-LKIHALEVADQAEWKCIATNDFGQSITSC 835
V ++ ++ L + ++ + C+A+N G+ TS
Sbjct: 216 NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM 275
Query: 836 FLK 838
F +
Sbjct: 276 FFR 278
Score = 85.0 bits (210), Expect = 4e-18
Identities = 34/242 (14%), Positives = 64/242 (26%), Gaps = 49/242 (20%)
Query: 36 GTYTCEAVNCMGAAFSTSRVIAR----------GQQSFLDNDDVPFN------------- 72
GTY C + + + + ++ D
Sbjct: 64 GTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVS 123
Query: 73 --RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVE 129
R +G + + G I R + Y +A + L V+
Sbjct: 124 LVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 189
+P PA ++ G A+++ + + F Q ++
Sbjct: 181 KVIPGPPALTLVPAELVRIRGEAAQIVCSAS-----------SVDVNFDVFLQHNNTKLA 229
Query: 190 NRFRAINRDGRTE----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 245
++ + R + LN+ +V G YS ASN G + V A
Sbjct: 230 IPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV-----ESAG 284
Query: 246 IR 247
Sbjct: 285 NS 286
Score = 63.8 bits (155), Expect = 6e-11
Identities = 21/191 (10%), Positives = 38/191 (19%), Gaps = 31/191 (16%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
P + V W + L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGPPSPHWTLYSDG------SSSILS 54
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLE 867
+ + ++C D + L + P + + V + E L
Sbjct: 55 TNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPA----RPWNVLAQEVVVFEDQDALLP 110
Query: 868 CKVIG-VPQPTLKWFK-DGRELKAGDIHKIISG----------EDGTCCLGIYTCEAHNC 915
C + V + + + GR L + Y C A
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQS----QDYQCSALMG 166
Query: 916 MGTTSSSAALL 926
S + L
Sbjct: 167 GRKVMSISIRL 177
Score = 51.9 bits (124), Expect = 4e-07
Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 42/176 (23%)
Query: 2 GIPTPQLIWYK-DNKKIKAGDIFALTAN------PKDPSSLGTYTCEAVNCMGAAFS--- 51
+ + + + + ++ + Y C A+ S
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISI 175
Query: 52 ------------------TSRVIARGQQSFLD----NDDVPFN-RAQGDHPIFGNRFRAI 88
V RG+ + + + DV F+ Q ++ ++
Sbjct: 176 RLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSD 235
Query: 89 NRDGRTE----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
+ R + LN+ +V G YS ASN G + V A
Sbjct: 236 FHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV-----ESAGNS 286
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 123 bits (309), Expect = 7e-31
Identities = 38/277 (13%), Positives = 73/277 (26%), Gaps = 42/277 (15%)
Query: 286 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
++ P+ + I++ L + +D G Y N S K
Sbjct: 41 YKDDSKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 99
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK------IHWYRNDRKLEENKIYRTQ 399
P+ + + + V L+ + + + WY++ + L + I+ +
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159
Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC----ELSVLVPKAYKAPFFTKELE 455
+V+ G +TC A E L P
Sbjct: 160 VKDRLIV---MNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216
Query: 456 AILT-EQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT----------------- 496
+ + G + L C V G + W + I D
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276
Query: 497 -------ANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
+ +TC A N G + ++I
Sbjct: 277 TVLNISEIESRFYK--HPFTCFAKNTHGIDAAYIQLI 311
Score = 117 bits (293), Expect = 9e-29
Identities = 39/301 (12%), Positives = 77/301 (25%), Gaps = 54/301 (17%)
Query: 668 VSFECKVVGFPTP-TLQWFKDNEELKPG---DVYQLTGTSSL----------GSYCCVAK 713
C + T+ W+KD+ + L G Y CV +
Sbjct: 23 DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 82
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
N + +L + + K P +G C +
Sbjct: 83 NSSYCLRIKISAKFVENEPNLCYNAQAI--FKQKLPVAGDGGLVCPYM------EFFKNE 134
Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
+ PK+ W++D + ++ + + L + + + + C A+ +
Sbjct: 135 NNELPKLQWYKDCKPLLLDNIHFSGVKD----RLIVMNVAEKHRGNYTCHASYTYLGKQY 190
Query: 834 SCFLKLNV----PKHYKKPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGREL 887
+ +P + + G + L C V G W +G +
Sbjct: 191 PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI 250
Query: 888 KAGDIHKI-----------ISGEDGTCCL-----------GIYTCEAHNCMGTTSSSAAL 925
D L +TC A N G ++ L
Sbjct: 251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Query: 926 L 926
+
Sbjct: 311 I 311
Score = 114 bits (285), Expect = 1e-27
Identities = 51/292 (17%), Positives = 86/292 (29%), Gaps = 43/292 (14%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYR---TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
+ + I WY++D K + QH +F + DSG + C+ N+
Sbjct: 32 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWF---VPAKVEDSGHYYCVVRNSSYCL 88
Query: 432 HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM------GIPTPQLIWYKDNK 485
+ + + L G L C M P+L WYKD K
Sbjct: 89 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCK 148
Query: 486 KIKAGDIFALTANPK------DPSSLGTYTCEAVNCMG-AAFSTSRVIARGQQSFLDNDD 538
+ +I + G YTC A + +RVI +
Sbjct: 149 PLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI--------EFIT 200
Query: 539 VPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASD-- 596
+ N P I E ++ +G+ L C V YW V++ D
Sbjct: 201 LEENKPTRP---VIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPV 256
Query: 597 ---------KYHIMADGLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFSA 638
+ I+ +E+ + C A ++ G+
Sbjct: 257 LGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308
Score = 112 bits (281), Expect = 3e-27
Identities = 48/319 (15%), Positives = 87/319 (27%), Gaps = 46/319 (14%)
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGYSIEI 612
+E + + + C + +I WY + + V I +
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK---EKLWF 66
Query: 613 NYLEAVDDGEWKCVATSSSGVKQFSAA-YVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671
+ D G + CV +SS + + P + + K + D
Sbjct: 67 VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD--GGLV 124
Query: 672 C------KVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNV 715
C K P LQW+KD + L +++ L G+Y C A
Sbjct: 125 CPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYT 184
Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL-KSCQATVNEEFKFTVQVSI 774
+ IE L P + ++ + + + + V+
Sbjct: 185 YLGKQYPITRVIEF---------ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235
Query: 775 SPEPKVSWFRDDQQVVESDNVKI-----------LKETLGVCHLKIHALEVADQA-EWKC 822
W + + E D V + + + L I +E + C
Sbjct: 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC 295
Query: 823 IATNDFGQSITSCFLKLNV 841
A N G L V
Sbjct: 296 FAKNTHGIDAAYIQLIYPV 314
Score = 108 bits (271), Expect = 6e-26
Identities = 42/328 (12%), Positives = 72/328 (21%), Gaps = 70/328 (21%)
Query: 449 FFTKELEAILTEQG--TVSLECKVMGIPTP-QLIWYKDNKKIKAGDIFALTANPKDPSSL 505
+E + IL C + + WYKD+ K A + L
Sbjct: 6 CKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK-EKL 64
Query: 506 ----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
G Y C N + +
Sbjct: 65 WFVPAKVEDSGHYYCVVRNSSYCLRIKISA----------------KFVENEPNLCYNAQ 108
Query: 556 EVENVKAKIGTSAILECQVLVPPWPR-----SIYWYNKEGVVEASDKYHIMADGLGGYSI 610
+ K + L C + + WY + + + +
Sbjct: 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD----RL 164
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAA---YVHVLMPKNYRKPRFVESLKAVMT--DD 665
+ + G + C A+ + KQ+ L +P V M
Sbjct: 165 IVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLG 224
Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-------------------- 705
+ C V G + W + + D S+
Sbjct: 225 SQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI 284
Query: 706 ------GSYCCVAKNVMGKAESSTQLTI 727
+ C AKN G + QL
Sbjct: 285 ESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 102 bits (256), Expect = 6e-24
Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 27/282 (9%)
Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
++ P+ + I++ L + +D G Y N S K
Sbjct: 41 YKDDSKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 99
Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 298
P+ + + + V L+ + + NN +P + P+ +
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE-----NNELPKLQWYKDCKPLLLDN 154
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESG----YSTAKFELSV-ESQVPDAPAFI 353
R L + V G Y+ AS T E E P P +
Sbjct: 155 IHFSGVKDR--LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIV 212
Query: 354 RRLHD-IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN------KIYRTQHDGNFYF 406
++ + V +G++ +L+ + +W N ++E+ Y ++ N
Sbjct: 213 SPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRR 272
Query: 407 IDLSSV-------SLFDSGRWTCLAENAVGRSHCSCELSVLV 441
L +V S F +TC A+N G +L V
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
Score = 97.5 bits (242), Expect = 4e-22
Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 17/276 (6%)
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
P+ + I++ L + +D G Y N S K P+
Sbjct: 45 SKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNL 103
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
+ + + V L+ + + NN +P + P+ +
Sbjct: 104 CYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE-----NNELPKLQWYKDCKPLLLDNIHFS 158
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESG----YSTAKFELSV-ESQVPDAPAFIRRLH 250
R L + V G Y+ AS T E E P P + +
Sbjct: 159 GVKDR--LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216
Query: 251 D-IAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 307
+ + V +G++ +L+ + +++ + D+ N
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276
Query: 308 TELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 342
T LNI + R ++ A N G A +L
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 77.8 bits (191), Expect = 2e-15
Identities = 41/282 (14%), Positives = 71/282 (25%), Gaps = 53/282 (18%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 53
+ WYKD+ K A + L G Y C N
Sbjct: 34 HKGTITWYKDDSKTPVSTEQASRIHQHK-EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 92
Query: 54 RV-IARGQQSFLDNDDVPFNRA------------------------------QGDHPIFG 82
+ + N F + + P+
Sbjct: 93 SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL 152
Query: 83 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG----YSTAKFELSV-ESQVPDAPA 137
+ R L + V G Y+ AS T E E P P
Sbjct: 153 DNIHFSGVKDR--LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPV 210
Query: 138 FIRRLHD-IAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
+ ++ + V +G++ +L+ + +++ + D+ N
Sbjct: 211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANK 270
Query: 195 INRDGRTELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 235
T LNI + R ++ A N G A +L
Sbjct: 271 RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 50.5 bits (120), Expect = 1e-06
Identities = 30/178 (16%), Positives = 44/178 (24%), Gaps = 51/178 (28%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK------DPSSLGTYTCEAVNCMG-AAFSTSR 54
P+L WYKD K + +I + G YTC A + +R
Sbjct: 135 NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITR 194
Query: 55 VI------------------------------------ARGQQS-----FLDNDDVPFNR 73
VI GQ S + + +
Sbjct: 195 VIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDD 254
Query: 74 AQGDHPIFGNRFRAINRDGRTE--LNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 128
+ A R LNI + R ++ A N G A +L
Sbjct: 255 PVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 49.0 bits (116), Expect = 5e-06
Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 10/79 (12%)
Query: 857 VLSEGGAVNLECKVIGVPQP-TLKWFKDGRELK-AGDIHKIISGEDGTCCL--------G 906
V S C + T+ W+KD + + + I G
Sbjct: 16 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSG 75
Query: 907 IYTCEAHNCMGTTSSSAAL 925
Y C N +
Sbjct: 76 HYYCVVRNSSYCLRIKISA 94
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 121 bits (306), Expect = 1e-30
Identities = 42/296 (14%), Positives = 77/296 (26%), Gaps = 48/296 (16%)
Query: 455 EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA----LTANPKDPSSLGTYTC 510
E ++ TV+L C G + W D + LT + GTY C
Sbjct: 13 ELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRC 68
Query: 511 EAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL 570
+ A +T + + PA + + V G A+L
Sbjct: 69 TELEDPMAGSTTIHLYVKD-------------------PAHSWNLLAQEVTVVEGQEAVL 109
Query: 571 ECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSS 630
C + P S+ + G + I + +D + C +
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFF---SPWRGFIIRKAKVLDSNTYVCKTMVN 166
Query: 631 SGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNE 689
+ ++ V + P+ ++ G C K +
Sbjct: 167 GRESTSTGIWLKV-NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGD 225
Query: 690 ELKPGD------VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
+L G Y CVA N +G ++ + +
Sbjct: 226 TKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
Score = 119 bits (300), Expect = 7e-30
Identities = 39/266 (14%), Positives = 75/266 (28%), Gaps = 30/266 (11%)
Query: 283 PFSFRAQGDHPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
+ R + + + + L R + G Y T + +
Sbjct: 21 TVTLRCVSNGSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT 80
Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRK-LEENK 394
L V + P A ++ ++ V G A L L+ + + + R + +
Sbjct: 81 IHLYV--KDP-AHSWNLLAQEVTVVEGQEAVLPCLITDPAL-KDSVSLMREGGRQVLRKT 136
Query: 395 IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV-PKAYKAPFFTKE 453
+Y F + + DS + C GR S + + V + P E
Sbjct: 137 VYFFSPWRGFI---IRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLE 192
Query: 454 LEAILTEQG-TVSLECKVMGIPTPQLIWYKDNK-KIKAGDIFALTANPKDPSSL------ 505
++ +G + C + K K++ N
Sbjct: 193 PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV 252
Query: 506 -----GTYTCEAVNCMGAAFSTSRVI 526
G Y+C A N +G +T
Sbjct: 253 DFQDAGIYSCVASNDVGTRTATMNFQ 278
Score = 119 bits (299), Expect = 9e-30
Identities = 47/281 (16%), Positives = 80/281 (28%), Gaps = 48/281 (17%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------GSYCCVAKNVMGKA 719
V+ C G +++W D T + G+Y C
Sbjct: 22 VTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAG 77
Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS-ISPEP 778
++ L ++D A + + +E ++ + +
Sbjct: 78 STTIHLYVKD-----------------PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKD 120
Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
VS R+ + V V G I +V D + C + G+ TS +
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRG---FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIW 176
Query: 839 LNV-PKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGREL----KAGDI 892
L V H + P+ E V G A + C K G D
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 893 HKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
+ L GIY+C A N +GT +++
Sbjct: 237 QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
Score = 118 bits (297), Expect = 2e-29
Identities = 39/276 (14%), Positives = 78/276 (28%), Gaps = 23/276 (8%)
Query: 176 PFSFRAQGDHPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
+ R + + + + L R + G Y T + +
Sbjct: 21 TVTLRCVSNGSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT 80
Query: 231 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 290
L V + P A ++ ++ V G + C +
Sbjct: 81 IHLYV--KDP-AHSWNLLAQEVTVVEG----------QEAVLPCLITDPALKDSVSLMRE 127
Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE-SGYSTAKFELSVESQVPDA 349
+ IR+ + D Y ++ L V P+
Sbjct: 128 GGRQVLRKTV-YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFYF 406
P + G A+++ + + R D KLE N ++ +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA 246
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ L++V D+G ++C+A N VG + V+
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282
Score = 110 bits (277), Expect = 7e-27
Identities = 35/308 (11%), Positives = 84/308 (27%), Gaps = 42/308 (13%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
PAP+ + + G + L C S+ W D G
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVS-----NGSVEWDGPISPYWTLD------PESPGS 51
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
++ + G ++C + +++V P + + + + +
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGS-TTIHLYVKDP---AHSWNLLAQEVTVVEGQEA 107
Query: 669 SFECKVVG-FPTPTLQWFKDNEELKPGD-VYQLTGTSSL----------GSYCCVAKNVM 716
C + ++ ++ VY + +Y C
Sbjct: 108 VLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMV-N 166
Query: 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
G+ +ST + ++ R H P+ E + + +
Sbjct: 167 GRESTSTGIWLKVNRVHPE------------PPQIKLEPSKLVRIRGEAAQIVCSATNAE 214
Query: 777 EPKVSWFRDDQQVVESDNVKILKETLGVCH--LKIHALEVADQAEWKCIATNDFGQSITS 834
+ +E ++ L ++A++ D + C+A+ND G +
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTAT 274
Query: 835 CFLKLNVP 842
++
Sbjct: 275 MNFQVVES 282
Score = 107 bits (269), Expect = 8e-26
Identities = 36/260 (13%), Positives = 67/260 (25%), Gaps = 22/260 (8%)
Query: 84 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
+ + L R + G Y T + + L V + P A ++
Sbjct: 41 YWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV--KDP-AHSWNLLAQ 97
Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 203
++ V G + C + +
Sbjct: 98 EVTVVEG----------QEAVLPCLITDPALKDSVSLMREGGRQVLRKTV-YFFSPWRGF 146
Query: 204 NIRRVRRDDGGRYSVTASNE-SGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
IR+ + D Y ++ L V P+ P + G A++
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
+ + ++ + + F+ L++ V D G
Sbjct: 207 VCSATNA-------EVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGI 259
Query: 323 YSVTASNESGYSTAKFELSV 342
YS ASN+ G TA V
Sbjct: 260 YSCVASNDVGTRTATMNFQV 279
Score = 87.7 bits (217), Expect = 6e-19
Identities = 30/224 (13%), Positives = 58/224 (25%), Gaps = 32/224 (14%)
Query: 36 GTYTCEAVNCMGAAFSTSRVIARG----------QQSFLDNDDVPFN-RAQG-------- 76
GTY C + A +T + + + + ++ +
Sbjct: 64 GTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVS 123
Query: 77 ----DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE-SGYSTAKFELSVESQ 131
+ IR+ + D Y ++ L V
Sbjct: 124 LMREGGRQVLRKTV-YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV 182
Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
P+ P + G A+++ + ++ + +
Sbjct: 183 HPEPPQIKLEPSKLVRIRGEAAQIVCSATNA-------EVGFNVILKRGDTKLEIPLNSD 235
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
F+ L++ V D G YS ASN+ G TA V
Sbjct: 236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 68.4 bits (167), Expect = 2e-12
Identities = 24/191 (12%), Positives = 43/191 (22%), Gaps = 29/191 (15%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
AP E + V W D L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSN----GSVEWDGPISPYWTLDPES------PGSTL 53
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNL 866
+ ++C D T+ L + P + + V + EG L
Sbjct: 54 TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA----HSWNLLAQEVTVVEGQEAVL 109
Query: 867 ECKVIG-VPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
C + + ++ ++G S G Y C+
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG---FIIRKAKVLDSNTYVCKTMVN 166
Query: 916 MGTTSSSAALL 926
++S+ L
Sbjct: 167 GRESTSTGIWL 177
Score = 53.0 bits (127), Expect = 2e-07
Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 37/164 (22%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAVNCMGAAFS--- 51
+ ++ + + + TY C+ + + S
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175
Query: 52 ------------------TSRVIARGQQSFL----DNDDVPF-----NRAQGDHPIFGNR 84
+ V RG+ + + N +V F +
Sbjct: 176 WLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD 235
Query: 85 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
F+ L++ V D G YS ASN+ G TA V
Sbjct: 236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 117 bits (294), Expect = 4e-30
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 25/195 (12%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKIL--------K 799
F+ + Q+ + P+V W RD Q + +D+ +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 800 ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVL 858
+ + V L+I +L+++D +++C+ + S + + P FLEE + +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQ-TFVSQPGYVGL---EGLPYFLEEPEDRTV 118
Query: 859 SEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIH------KIISGEDGTCCLGIYTCE 911
+ NL C+ G P+P L W +D L H + ++CE
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKT----SSFSCE 174
Query: 912 AHNCMGTTSSSAALL 926
AHN G T+S A +
Sbjct: 175 AHNAKGVTTSRTATI 189
Score = 104 bits (261), Expect = 1e-25
Identities = 38/191 (19%), Positives = 64/191 (33%), Gaps = 21/191 (10%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA-------- 602
F+ N+ G + L CQ+ V P ++W ++E +D
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM 662
D + + I L+ D G+++C+ YV + P F+E +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL-----PYFLEEPEDRT 117
Query: 663 TDDG-LVSFECKVVGFPTPT-LQWFKDNEELKPGDVY------QLTGTSSLGSYCCVAKN 714
+ C+ G P P L W +D L + + G + S+ C A N
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHN 177
Query: 715 VMGKAESSTQL 725
G S T
Sbjct: 178 AKGVTTSRTAT 188
Score = 98.4 bits (245), Expect = 2e-23
Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 19/208 (9%)
Query: 241 DAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGN 297
+ F+ +I G L +++ P E+ D + + Q P+ +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD-GQILELADSTQTQVPLGED 59
Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRL 356
+ L I ++ D G+Y + + + +E P F+
Sbjct: 60 EQDDWIVVSQ--LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG----LPYFLEEP 113
Query: 357 HDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF 415
D V T L + + P + + W ++ L + Q L L
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS-------LHVPGLN 166
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPK 443
+ ++C A NA G + ++P+
Sbjct: 167 KTSSFSCEAHNAKGVTTSRTATITVLPQ 194
Score = 97.7 bits (243), Expect = 3e-23
Identities = 42/221 (19%), Positives = 67/221 (30%), Gaps = 49/221 (22%)
Query: 448 PFFTKELEAILTEQG-TVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALTANPKDP--- 502
F I +G T +L C++ P++ W +D + ++ D +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 503 -----SSL----------GTYTCEAVNCMGAAFSTS-RVIARGQQSFLDNDDVPFNSLMP 546
S L G Y C S V G
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG----------------- 105
Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
P F++E E+ T L CQ PP P + W ++ V A+ H
Sbjct: 106 ---LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWL-QDAVPLATAPGH-----GP 156
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
S+ + L + C A ++ GV A + VL +
Sbjct: 157 QRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVLPQQ 195
Score = 87.3 bits (216), Expect = 1e-19
Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 53/216 (24%)
Query: 652 PRFVESLKAVMTDDGL-VSFECKV-VGFPTPTLQWFKDNEELKPGD------------VY 697
FV + + GL + C++ V P + W +D + L+ D
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 698 QLTGTSSL----------GSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNN 746
S L G Y C+ S + +E
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG----------------- 105
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVC 805
P F+E + N F + Q PEP + W +D + +
Sbjct: 106 -LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-------- 156
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+H + + + C A N G TS + V
Sbjct: 157 QRSLHVPGLNKTSSFSCEAHNAKG-VTTSRTATITV 191
Score = 78.4 bits (193), Expect = 1e-16
Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 33/211 (15%)
Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
+ F+ +I G L +++ P E+ D + + Q P+ +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD-GQILELADSTQTQVPLGED 59
Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRL 249
+ L I ++ D G+Y + + + +E P F+
Sbjct: 60 EQDDWIVVSQ--LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG----LPYFLEEP 113
Query: 250 HDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 306
D V T L + + P ++ D P+ R
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQD-------------AVPLATAPGHGPQR-- 158
Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
++ + +S A N G +T++
Sbjct: 159 ----SLHVPGLNKTSSFSCEAHNAKGVTTSR 185
Score = 68.4 bits (167), Expect = 3e-13
Identities = 23/172 (13%), Positives = 46/172 (26%), Gaps = 28/172 (16%)
Query: 63 FLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YST 121
D + + G + L I ++ D G+Y + +
Sbjct: 38 LRDGQILELADSTQTQVPLGEDEQDDWIVVSQ-LRITSLQLSDTGQYQCLVFLGHQTFVS 96
Query: 122 AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFS 178
+ +E P F+ D V T L + + P ++ D
Sbjct: 97 QPGYVGLEG----LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQD-------- 144
Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
P+ R ++ + +S A N G +T++
Sbjct: 145 -----AVPLATAPGHGPQR------SLHVPGLNKTSSFSCEAHNAKGVTTSR 185
Score = 56.4 bits (136), Expect = 5e-09
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 20/109 (18%)
Query: 848 PKFLEELKAVL-SEGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKIIS--GEDGTC 903
F+ + + G L C++ + P + W +DG+ L+ D + GED
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 904 CL----------------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEK 936
G Y C T S +G E +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE 111
Score = 52.6 bits (126), Expect = 9e-08
Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 37/158 (23%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDP--------SSL----------GTYTCEAV 43
P++ W +D + ++ D + S L G Y C
Sbjct: 29 QGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF 88
Query: 44 NCMGAAFSTS-RVIARGQQSFLD---------NDDVPFN-RAQGD-HPIF------GNRF 85
S V G FL+ N + +AQG P+
Sbjct: 89 LGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL 148
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 123
G + ++ + +S A N G +T++
Sbjct: 149 ATAPGHGP-QRSLHVPGLNKTSSFSCEAHNAKGVTTSR 185
Score = 38.7 bits (90), Expect = 0.004
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 2 GIPTPQLI-WYKDNKKIKAGDIFALT-----ANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
G P P + W +D + +++CEA N G S +
Sbjct: 132 GPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKT---SSFSCEAHNAKGVTTSRTAT 188
Query: 56 I 56
I
Sbjct: 189 I 189
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 120 bits (301), Expect = 2e-29
Identities = 51/397 (12%), Positives = 110/397 (27%), Gaps = 69/397 (17%)
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG---------- 604
K+V V K G + L C +W N + ++ + G
Sbjct: 1 KKV--VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 57
Query: 605 ------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESL 658
G + + I L+ D + C + + +
Sbjct: 58 RRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE--EVQLLVFGLTANSDTH-------- 107
Query: 659 KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTSSLGSYCCVAKN 714
++ ++ + +P++Q + G V QL S G++ C
Sbjct: 108 --LLQGQS-LTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDS-GTWTCTVLQ 163
Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774
K E + + + S K + ++ + E + + +
Sbjct: 164 NQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG--ELWWQAERAS 221
Query: 775 SPEPKVSWFRDDQQVV---ESDNVKILKETLGVCHLKIH--ALEVADQAEWKCIATNDFG 829
S + +++ +++V + + K+ HL + + A G
Sbjct: 222 SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG 281
Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP--TLKWFKDGREL 887
+ + L V + + NL C+V G P L + +E
Sbjct: 282 K--LHQEVNLVVMR---------------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEA 324
Query: 888 KAGDIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSS 922
K K + + G++ C + S
Sbjct: 325 KVSKREKAVWVLNPEA----GMWQCLLSDSGQVLLES 357
Score = 103 bits (258), Expect = 8e-24
Identities = 51/397 (12%), Positives = 105/397 (26%), Gaps = 67/397 (16%)
Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID---------- 408
+ K G L I+ HW +++ G D
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 409 -------LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
+ ++ + DS + C E+ + + L +
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANS-----------DTHLLQG 111
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
+++L + +P + K G L+ + + GT+TC +
Sbjct: 112 QSLTLTLESPPGSSPSVQCRSPRGKNIQGG-KTLSVSQLELQDSGTWTCTVLQNQKKVEF 170
Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQ---VLVPP 578
++ Q G F + K+ S L Q
Sbjct: 171 KIDIVVLAFQK------ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK 224
Query: 579 WPRSIYWYNKEGVVEAS---DKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQ 635
+ NKE V+ K + ++ + G + +G K
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KL 283
Query: 636 FSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTP--TLQWFKDNEELKP 693
+ V+ L+ +T C+V G +P L +N+E K
Sbjct: 284 HQEVNLVVMR---------ATQLQKNLT--------CEVWGPTSPKLMLSLKLENKEAKV 326
Query: 694 GD---VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTI 727
+ + G + C+ + G+ + + +
Sbjct: 327 SKREKAVWVLNPEA-GMWQCLLSDS-GQVLLESNIKV 361
Score = 95.6 bits (237), Expect = 4e-21
Identities = 49/395 (12%), Positives = 113/395 (28%), Gaps = 75/395 (18%)
Query: 59 GQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 118
Q L N + + R++ G L I+ ++ +D Y ++
Sbjct: 32 NQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE 91
Query: 119 YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS 178
V+ V A D + G L + ++
Sbjct: 92 --------EVQLLVFGLTAN----SDTHLLQGQSLTL----------TLESPPGSSPSVQ 129
Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
R+ I G + L++ ++ D G ++ T K ++ V +
Sbjct: 130 CRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF 179
Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVE-IRSPTEIKCQFD----LNNTIPFSFRAQGDHP 293
A + + + V+ VE + E+ Q + + I F + +
Sbjct: 180 QK-ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSV 238
Query: 294 IFGNRFRAINRDGRTELNIRR----VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
+ + + L++ + G ++ ++G + L V +
Sbjct: 239 KRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM-RATQL 297
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
L E+ PT ++ + +++ + +K +
Sbjct: 298 QK----------------NLTCEVWGPTSPKLMLSLKLENKEAKVSKREK---------- 331
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
V ++G W CL ++ E ++ V
Sbjct: 332 -AVWVLNPEAGMWQCLLSDSGQV---LLESNIKVL 362
Score = 92.9 bits (230), Expect = 3e-20
Identities = 48/339 (14%), Positives = 94/339 (27%), Gaps = 75/339 (22%)
Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 257
G L I+ ++ +D Y ++ V+ V A D + G
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKE--------EVQLLVFGLTAN----SDTHLLQG 111
Query: 258 TRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR 317
L + ++ R+ I G + L++ ++
Sbjct: 112 QSLTL----------TLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLEL 151
Query: 318 DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT 377
D G ++ T K ++ V + A + + + V+ VE + +
Sbjct: 152 QDSGTWTCTVLQNQKKVEFKIDIVVLAFQK-ASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210
Query: 378 ---------------EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLS----SVSLFDSG 418
I + ++ G + L+ SG
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 419 RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQL 478
T E G+ H L V+ Q +L C+V G +P+L
Sbjct: 271 NLTLALEAKTGKLHQEVNLVVMRA-----------------TQLQKNLTCEVWGPTSPKL 313
Query: 479 I--WYKDNKKIKAGD-IFALTANPKDPSSLGTYTCEAVN 514
+ +NK+ K A+ + G + C +
Sbjct: 314 MLSLKLENKEAKVSKREKAVWVLNPEA---GMWQCLLSD 349
Score = 88.7 bits (219), Expect = 7e-19
Identities = 57/446 (12%), Positives = 114/446 (25%), Gaps = 143/446 (32%)
Query: 455 EAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-------- 505
+ +L ++G TV L C + Q W N+ G+ + +
Sbjct: 2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61
Query: 506 ------------------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPP 547
TY CE + V + F
Sbjct: 62 WDQGNFPLIIKNLKIEDSDTYICEVED------QKEEV-----------QLLVFGLTANS 104
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
+ G S L + P S+ + G GG
Sbjct: 105 -----------DTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNI-----------QGG 141
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV------ 661
++ ++ LE D G W C + +F + VL + + + + V
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFK-IDIVVLAFQKASSIVYKKEGEQVEFSFPL 200
Query: 662 ------MTDDGLVSFECKVVGFPTPTLQWFKDNEEL-----KPGDVYQLTGTSSL----- 705
+T G + ++ + + + N+E+ Q+ L
Sbjct: 201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLP 260
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
G+ + GK L + ++ K L
Sbjct: 261 QALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA----TQLQKNL--------------- 301
Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
+C+ V SP+ +S ++++ S K + +
Sbjct: 302 TCE----------VWGPTSPKLMLSLKLENKEAKVSK------------REKAVWVLNPE 339
Query: 817 QAEWKCIATNDFGQSITSCFLKLNVP 842
W+C+ ++ + S + V
Sbjct: 340 AGMWQCLLSDSGQVLLES---NIKVL 362
Score = 87.2 bits (215), Expect = 3e-18
Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 40/252 (15%)
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD----------------NVKILKETL 802
+ + T S + W +Q + + + +
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGG 862
G L I L++ D + C + + + L L +G
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANS-----------DTHLLQGQ 112
Query: 863 AVNLECKVIGVPQPTLKWFKDGRELKAGD----IHKIISGEDGTCCLGIYTCEAHNCMGT 918
++ L + P+++ + G + + + +D G +TC
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQ-LELQDS----GTWTCTVLQNQKK 167
Query: 919 TSSSAALL--GFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMAS-IEEREI 975
++ F+ S I +EG++ + + + G+ E++ + + I
Sbjct: 168 VEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWI 227
Query: 976 SFSFDGKEVSVS 987
+F KEVSV
Sbjct: 228 TFDLKNKEVSVK 239
Score = 85.6 bits (211), Expect = 8e-18
Identities = 32/299 (10%), Positives = 71/299 (23%), Gaps = 62/299 (20%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTI 727
V C + W N+ G+ + + L I
Sbjct: 12 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 71
Query: 728 EDIR------------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS 775
++++ + EE +LL+ + T++
Sbjct: 72 KNLKIEDSDTYICEVEDQ-KEEVQLLVFGLTANS-------DTHLLQGQSLTLTLESPPG 123
Query: 776 PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835
P V + ++ L + LE+ D W C + +
Sbjct: 124 SSPSVQCRSPRGKNIQGGKT-----------LSVSQLELQDSGTWTCTVLQNQKKV--EF 170
Query: 836 FLKLNVPKHYKKPKFLEELK--------------AVLSEGGAVNLECKVIGVPQPTLKWF 881
+ + V K + + + L+ G + + + + + +
Sbjct: 171 KIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFD 230
Query: 882 KDGREL---KAGDIHKIISGEDGTCCL------------GIYTCEAHNCMGTTSSSAAL 925
+E+ + K+ G+ L G T G L
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Score = 76.0 bits (186), Expect = 1e-14
Identities = 44/382 (11%), Positives = 95/382 (24%), Gaps = 81/382 (21%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-------------------------- 35
+ Q W N+ G+ + +
Sbjct: 20 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79
Query: 36 GTYTCEAVNCMGAA-FSTSRVIARGQQSFLDNDDVPFN-RAQGD-HPIF---GNRFRAIN 89
TY CE + + A L + + P R + I
Sbjct: 80 DTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ 139
Query: 90 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
L++ ++ D G ++ T K ++ V + A + + + V+
Sbjct: 140 GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK-ASSIVYKKEGEQVEF 196
Query: 150 GTRARLLVE-IRSPTEIKCQFD----LNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 204
VE + E+ Q + + I F + + + + + L+
Sbjct: 197 SFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH 256
Query: 205 IRR----VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
+ + G ++ ++G + L V +
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM-RATQLQ----------------K 299
Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
L E+ PT + + S + + R V +
Sbjct: 300 NLTCEVWGPT--------SPKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEA 340
Query: 321 GRYSVTASNESGYSTAKFELSV 342
G + S+ SG + + V
Sbjct: 341 GMWQCLLSD-SGQVLLESNIKV 361
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 114 bits (288), Expect = 5e-29
Identities = 53/201 (26%), Positives = 77/201 (38%), Gaps = 26/201 (12%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK---ILKETLG 803
++P+ IE NE +V PEP + WF+D + V ++ K+
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVL-SEGG 862
+ + + D E+ C+A N GQ S L + + F E K ++G
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQ-AVSRHASLQI--AVLRDDFRVEPKDTRVAKGE 124
Query: 863 AVNLEC-KVIGVPQPTLKWFKDGRELKAGDIHKIISG------EDGTCCL---------- 905
LEC G+P+PTL W KDG L + + G L
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN--LLISNVEPIDE 182
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
G Y C A N +GT SS A L
Sbjct: 183 GNYKCIAQNLVGTRESSYAKL 203
Score = 106 bits (265), Expect = 6e-26
Identities = 54/229 (23%), Positives = 80/229 (34%), Gaps = 45/229 (19%)
Query: 649 YRKPRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTS 703
Y+ PR +E V+ + + CKV G P PT++WFKD E + + Q +
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 704 SL-------------GSYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAP 749
G Y CVAKN +G+A S L I +R
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR-----------------D 109
Query: 750 KFIEGLKSCQATVNEEFKFT-VQVSISPEPKVSWFRDDQQVVESDNVKILKE----TLGV 804
F K + E PEP + W +D + + + +
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE 853
+L I +E D+ +KCIA N G + S + KL V K
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNLVG-TRESSYAKLIV---QVKAAAHHH 214
Score = 103 bits (258), Expect = 6e-25
Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 54/233 (23%)
Query: 441 VPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD-------- 491
+ Y++P + ++ + +L CKV G P P + W+KD + + +
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 492 -----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPFNS 543
F T K G Y C A N +G A S ++
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV---------------- 106
Query: 544 LMPPGPAPIFIKEVENVKAKIGTSAILEC-QVLVPPWPRSIYWYNKEGV---------VE 593
F E ++ + G +A+LEC P P ++ W K+GV
Sbjct: 107 -----LRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TLIWI-KDGVPLDDLKAMSFG 159
Query: 594 ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
AS + I+ G ++ I+ +E +D+G +KC+A + G ++ S A + V +
Sbjct: 160 ASSRVRIVDGG----NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 82.2 bits (203), Expect = 9e-18
Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 20/219 (9%)
Query: 232 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD 291
L+ + Q +P I D+ VK A L ++ E ++ + P S +
Sbjct: 2 PLAGQYQ---SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDG-EPVSTNEKKS 57
Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAP 350
H R + + ++ + DGG Y A N G + + L +
Sbjct: 58 H-----RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL---RD 109
Query: 351 AFIRRLHDIAVKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID- 408
F D V G A L + E + W ++ L++ K +D
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169
Query: 409 ----LSSVSLFDSGRWTCLAENAVGRSHCSC-ELSVLVP 442
+S+V D G + C+A+N VG S +L V V
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 74.1 bits (182), Expect = 6e-15
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 841 VPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-------- 891
+ Y+ P+ +E V+ + L CKV G P+PT++WFKDG + +
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 892 ------IHKIISG---EDGTCCLGIYTCEAHNCMGTTSSSAALL-------GFEDKSQIE 935
++ + G +DG G Y C A N +G S A L F + +
Sbjct: 63 KDGALFFYRTMQGKKEQDG----GEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118
Query: 936 KAEEGKKALI 945
+ +G+ AL+
Sbjct: 119 RVAKGETALL 128
Score = 64.9 bits (158), Expect = 9e-12
Identities = 49/238 (20%), Positives = 75/238 (31%), Gaps = 28/238 (11%)
Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD 184
L+ + Q +P I D+ VK A L ++ E ++ + P S +
Sbjct: 2 PLAGQYQ---SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDG-EPVSTNEKKS 57
Query: 185 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAP 243
H R + + ++ + DGG Y A N G + + L +
Sbjct: 58 H-----RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL---RD 109
Query: 244 AFIRRLHDIAVKVGTRARLL-VEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
F D V G A L + P + D + + +R R
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDL---KAMSFGASSRVR 165
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQVPDAPAFIRRLH 357
I G L I V D G Y A N G + + +L V QV A H
Sbjct: 166 -IVDGG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV--QVK--AAAHHHHH 216
Score = 63.3 bits (154), Expect = 3e-11
Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 54/189 (28%)
Query: 2 GIPTPQLIWYKDNKKIKAGD-------------IFALTANPKDPSSLGTYTCEAVNCMGA 48
G P P + W+KD + + + F T K G Y C A N +G
Sbjct: 35 GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94
Query: 49 AFS------------------TSRVIARGQQSFLD---------------NDDVPFNRAQ 75
A S +A+G+ + L+ D VP + +
Sbjct: 95 AVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLK 154
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQVPD 134
+R R I G L I V D G Y A N G + + +L V QV
Sbjct: 155 AMSFGASSRVR-IVDGG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV--QVK- 208
Query: 135 APAFIRRLH 143
A H
Sbjct: 209 -AAAHHHHH 216
Score = 61.0 bits (148), Expect = 2e-10
Identities = 38/176 (21%), Positives = 53/176 (30%), Gaps = 21/176 (11%)
Query: 82 GNRFRAINRDG--RTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAF 138
R +DG ++ + DGG Y A N G + + L + F
Sbjct: 55 KKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL---RDDF 111
Query: 139 IRRLHDIAVKVGTRARLL-VEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
D V G A L + P + D + + +R R I
Sbjct: 112 RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDL---KAMSFGASSRVR-I 166
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQVPDAPAFIRRLH 250
G L I V D G Y A N G + + +L V QV A H
Sbjct: 167 VDGG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV--QVK--AAAHHHHH 216
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 122 bits (307), Expect = 5e-29
Identities = 76/534 (14%), Positives = 157/534 (29%), Gaps = 84/534 (15%)
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
+NI ++ +DD GRY S V +V P + V +G +
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSR----GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI 132
Query: 263 LVEIRS--PTEIK--CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRR 314
++ + K + + + +P + R R ++ G + + I +
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR-LDIQGTGQLLFSVVINQ 191
Query: 315 VRRDDGGRYSVTASNESGYSTAKFELSV-----ESQVPDAPAFIRRLHDIAVKVGTRARL 369
+R D G+Y A ++S + +L V E D + + +V A+
Sbjct: 192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 370 LVEIRSPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFYF-IDLSSVSLFDSGRWTCLAEN 426
L S + ++ E +I D + F + ++ + D+GR+ C A +
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 427 AVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKK 486
S + + ++ +V++ C + + ++ +
Sbjct: 312 DGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG 371
Query: 487 IKAGDI-----------------FALTANPKDPSSL-----------GTYTCEAVNCMGA 518
+ G +L P + + G Y C
Sbjct: 372 AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Query: 519 AFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPP 578
+ + +K NV A +G + + C
Sbjct: 432 RTTVE---------------------IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKF 470
Query: 579 WPRSIYW--YNKEGV-------VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATS 629
YW +N G S + + S+ +N + D+G + C
Sbjct: 471 SSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQ 530
Query: 630 SSGVKQFSAAYVHV-----LMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP 678
+ +A YV V ++ + + + D G E K + P
Sbjct: 531 GHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDP 584
Score = 115 bits (289), Expect = 8e-27
Identities = 69/494 (13%), Positives = 131/494 (26%), Gaps = 100/494 (20%)
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
+NI ++ +DD GRY S V +V P + V +G +
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSR----GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI 132
Query: 370 LVEIRS-PTEIKIHWYRNDRKLEENKIY---------------RTQHDGNFYF-IDLSSV 412
++ + + Y+ I Q G F + ++ +
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192
Query: 413 SLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ--------GTV 464
L D+G++ C A + + + +L VL P+ ++L +T
Sbjct: 193 RLSDAGQYLCQAGDDSNSNKKNADLQVLKPEP---ELVYEDLRGSVTFHCALGPEVANVA 249
Query: 465 SLECKVMGIPTPQLIWYKDNKKIKAGD------------IFALTANPKDPSSLGTYTCEA 512
C+ ++ K+ A + F++ G Y C A
Sbjct: 250 KFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGA 309
Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
+ L + + VK G+S + C
Sbjct: 310 HSDGQ----------------LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC 353
Query: 573 QVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL------GGYSI-----------EINYL 615
YW EG + ++G G S+ +N L
Sbjct: 354 PYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQL 413
Query: 616 EAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVV 675
+ D G + C+ + + + P L + F CK
Sbjct: 414 TSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP--CHFPCKFS 471
Query: 676 GFPTPTLQWFKDNEELKPGD----------VYQLTGTSSL----------GSY-CCVAKN 714
+ +W + P + + SL G Y C V +
Sbjct: 472 SYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG 531
Query: 715 VMGKAESSTQLTIE 728
++ + +E
Sbjct: 532 HFYGETAAVYVAVE 545
Score = 113 bits (282), Expect = 5e-26
Identities = 60/583 (10%), Positives = 126/583 (21%), Gaps = 143/583 (24%)
Query: 446 KAPFFT-KELEAILTEQGTVSLECKV---MGIPTPQLIWYKDNKKIK------------- 488
K+P F +E+ + E +VS+ C + W + +
Sbjct: 1 KSPIFGPEEVNS--VEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSS 58
Query: 489 ------------AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDN 536
F + G Y C ++
Sbjct: 59 KYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGI--------------------NS 98
Query: 537 DDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV----- 591
+ F+ + P + + + +G + + C + Y + G+
Sbjct: 99 RGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLV 158
Query: 592 --------VEASDKYHIMADG--LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
+ + + G +S+ IN L D G++ C A S + +A
Sbjct: 159 IDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQ 218
Query: 642 HVLMPKNYRKPRFVESL----KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-- 695
+ S+ + F C+ + + +
Sbjct: 219 VLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGR 278
Query: 696 ----VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL 741
G+ S+ G Y C A + E S + N
Sbjct: 279 ILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE-------- 330
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK-- 799
+ + + ++ + ++
Sbjct: 331 ------ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSE 384
Query: 800 ----------------ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
G + ++ L D + C+ D T +
Sbjct: 385 GWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV-----EIKI 439
Query: 844 HYKKPKFLEELKAVLSEGGAVNLEC----KVIGVPQPTLKWFKDGRELKAGDIHK----- 894
+P G + + C K + KW G +
Sbjct: 440 IEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAF 499
Query: 895 -IISGEDGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
L G Y C ++A +
Sbjct: 500 VNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542
Score = 112 bits (281), Expect = 7e-26
Identities = 68/478 (14%), Positives = 137/478 (28%), Gaps = 65/478 (13%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
+NI ++ +DD GRY S V +V P + V +G +
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSR----GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI 132
Query: 156 LVEIRS--PTEIK--CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRR 207
++ + K + + + +P + R R ++ G + + I +
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR-LDIQGTGQLLFSVVINQ 191
Query: 208 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR 267
+R D G+Y A ++S + +L V P D+ V L E+
Sbjct: 192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLK-----PEPELVYEDLRGSVTFHCALGPEVA 246
Query: 268 SPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRF--RAINRDGRTELNIRRVRRDDGGRYS 324
+ + C+ P F R ++DG + I +R++D GRY
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL 306
Query: 325 VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWY 384
A ++ + + V + R + G+ +L I ++
Sbjct: 307 CGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366
Query: 385 RNDRKLEE---------NKIYRTQHDGNFYFID----------LSSVSLFDSGRWTCLAE 425
+ + Q++G ++ L+ ++ D+G + CL
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN 426
Query: 426 NAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM----GIPTPQLIWY 481
+V + P T+ + C W
Sbjct: 427 GDTLWRT-----TVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN 481
Query: 482 KDNKKIKAGD----------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
+ + +LT N + G Y C + +
Sbjct: 482 NTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA 539
Score = 101 bits (252), Expect = 3e-22
Identities = 63/594 (10%), Positives = 153/594 (25%), Gaps = 93/594 (15%)
Query: 358 DIAVKVGTRARL---LVEIRSPTEIKIHWYRNDRKLEENKIYRTQ--------------- 399
++ G + + +W R + + ++
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 400 -HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAIL 458
+ + ++++ +S DSGR+ C V + + +
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLS----FDVSLEVSQGPGLLNDTKVYTV 124
Query: 459 TEQGTVSLECKVMGIPTPQLIW----------------------YKDNKKIKAGD----I 492
TV++ C + Y ++ +
Sbjct: 125 DLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLL 184
Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
F++ N S G Y C+A + + + D + +
Sbjct: 185 FSVVINQLRLSDAGQYLCQAGDDSNSNKKNA-----------DLQVLKPEPELVYEDLRG 233
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG-YSIE 611
+ + ++ A C+ + + + + G +S+
Sbjct: 234 SVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVV 293
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671
I L D G + C A S +++ S L ++ + V+
Sbjct: 294 ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVA-GSSVAVL 352
Query: 672 CKVVGFPTPTLQWFKDNEELKPGDVYQL--TGTSSLGSYCCVAKNVMGKAESSTQLTIED 729
C + +++++ E + G L + Y + + + +
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412
Query: 730 IR-----------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS--- 775
+ N + + + + ++ + A + E K
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSS 472
Query: 776 -PEPKVSWFRDDQQVVESDN------VKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
+ W Q + S + E + L ++ + AD+ + C
Sbjct: 473 YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532
Query: 829 GQSITSCFLKLNV---PKHYKKPKFLEELKAVLSE----GGAVNLECKVIGVPQ 875
T+ + + V + L + A E G +E K I P+
Sbjct: 533 FYGETA-AVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDPR 585
Score = 95.8 bits (237), Expect = 2e-20
Identities = 73/563 (12%), Positives = 151/563 (26%), Gaps = 97/563 (17%)
Query: 2 GIPTPQLIWYKDNKKIK-------------------------AGDIFALTANPKDPSSLG 36
+ W + + F + G
Sbjct: 29 VNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG 88
Query: 37 TYTCEAVNCMG-AAFSTSRVIARGQQSFLDNDDVPFN----------------------- 72
Y C +F S +++G D +
Sbjct: 89 RYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLY 148
Query: 73 RAQGDHP---IFGNRFRAINRDGRT------------ELNIRRVRRDDGGRYSVTASNES 117
+ G +P I + + N GR + I ++R D G+Y A ++S
Sbjct: 149 KQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDS 208
Query: 118 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 177
+ +L V P D+ V L E+ + + C+
Sbjct: 209 NSNKKNADLQVLK-----PEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV 263
Query: 178 S-FRAQGDHPIFGNRF--RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS 234
P F R ++DG + I +R++D GRY A ++ +
Sbjct: 264 VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323
Query: 235 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTEIK--CQFDLNNTIPFSFRAQG 290
+ V + R + G+ +L IK C ++
Sbjct: 324 WQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDS 383
Query: 291 D---HPIFGNRF--RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+ + R +G + + ++ D G Y + ++ + T E+ +
Sbjct: 384 EGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRT-TVEIKIIEG 442
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE------ENKIYRTQ 399
P+ + + + S + W + +K +
Sbjct: 443 EPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNC 502
Query: 400 HDGNFYF-IDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVPKAYKAPFFTKELEAI 457
+ + + L+ V+ D G + C + + ++V KA +A
Sbjct: 503 DENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA-AGSRDVSLAKAD 561
Query: 458 ------LTEQGTVSLECKVMGIP 474
+ + G +E K + P
Sbjct: 562 AAPDEKVLDSGFREIENKAIQDP 584
Score = 43.8 bits (102), Expect = 3e-04
Identities = 28/216 (12%), Positives = 48/216 (22%), Gaps = 47/216 (21%)
Query: 772 VSISPEPKVSWFRDD--------------QQVVESDNVKIL-KETLGVCHLKIHALEVAD 816
S++ + W R + + G + I L D
Sbjct: 27 TSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 86
Query: 817 QAEWKCIATND-FGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
+KC + G S P K + G V + C
Sbjct: 87 SGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT-----VDLGRTVTINCPFKTENA 141
Query: 876 PTLKWF--KDG-------------RELKAGDIHKIISGEDGTCCL-----------GIYT 909
K + G G I I G G Y
Sbjct: 142 QKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYL 201
Query: 910 CEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALI 945
C+A + + +A L + + ++ +
Sbjct: 202 CQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTF 237
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 114 bits (286), Expect = 7e-29
Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 25/203 (12%)
Query: 548 GPA-----PIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWY-NKEGVVEASDKYHI 600
GP P +E V+ K G +L C P S W N+ V DK
Sbjct: 1 GPGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF 60
Query: 601 MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP----KNYRKPRFVE 656
++ G ++ I +EA D G + C +S S K + ++ ++ V
Sbjct: 61 VSQTNG--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVV 118
Query: 657 SLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------- 705
K V G V+ EC +G P P ++W K E + +G + L
Sbjct: 119 QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNIQLEDE 177
Query: 706 GSYCCVAKNVMGKAESSTQLTIE 728
G Y C A+N+ GK + ++ ++
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQ 200
Score = 113 bits (283), Expect = 1e-28
Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 25/196 (12%)
Query: 350 PAFIRRLHDIAVKVGTRARLL--VEIRSPTEIKIHWYRNDRKL---EENKIYRTQHDGNF 404
P ++ VK G LL P ++ W N+ + + + + +Q +GN
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK-----AYKAPFFTKELEAILT 459
Y ++V D G ++C + + L+P + + +
Sbjct: 69 YI---ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYA 125
Query: 460 EQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTC 510
G V+LEC +G P P + W K + + + + + +D G Y C
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDE---GIYEC 182
Query: 511 EAVNCMGAAFSTSRVI 526
EA N G +R+
Sbjct: 183 EAENIRGKDKHQARIY 198
Score = 100 bits (250), Expect = 3e-24
Identities = 37/195 (18%), Positives = 61/195 (31%), Gaps = 24/195 (12%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEP--KVSWFRDDQQV-VESDNVKILKETLGVC 805
P E + + W ++ V + D + + +T G
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-- 66
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSC-FLKLNVPKHYKK----PKFLEELK-AVLS 859
+L I +E +D+ + C ++ F+ L + + K
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI---------ISGEDGTCCLGIYTC 910
G V LEC +G P P ++W K + + I ED GIY C
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDE----GIYEC 182
Query: 911 EAHNCMGTTSSSAAL 925
EA N G A +
Sbjct: 183 EAENIRGKDKHQARI 197
Score = 93.4 bits (232), Expect = 9e-22
Identities = 24/205 (11%), Positives = 56/205 (27%), Gaps = 29/205 (14%)
Query: 649 YRKPRFVESLKAVMTDDG-LVSFECKVVGFPTP--TLQWFKDNEELKP---GDVYQLTGT 702
Y P E V +G + C + +W + + +
Sbjct: 6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65
Query: 703 SSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI 752
+L G+Y C + ++ + + +
Sbjct: 66 GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY--------PADIV 117
Query: 753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
K A + + +P P + W + + + + + LKI +
Sbjct: 118 VQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV-----LKIFNI 172
Query: 813 EVADQAEWKCIATNDFGQSITSCFL 837
++ D+ ++C A N G+ +
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARI 197
Score = 83.8 bits (207), Expect = 2e-18
Identities = 39/210 (18%), Positives = 62/210 (29%), Gaps = 32/210 (15%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIF---GNR 298
P ++ VK G L C + S+R + P+F R
Sbjct: 9 PFPPEERPEVRVKEGKGMVL----------LCDPPYHFPDDLSYRWLLNEFPVFITMDKR 58
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD------APAF 352
+G L I V D G YS S+ S + + +P+
Sbjct: 59 RFVSQTNGN--LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116
Query: 353 IRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
+ + D+ +G L P I W + + G I
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVPD---IRWRKVLEPMPST--AEISTSGAVLKI-- 169
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
++ L D G + C AEN G+ + V
Sbjct: 170 FNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 74.2 bits (182), Expect = 5e-15
Identities = 40/230 (17%), Positives = 66/230 (28%), Gaps = 58/230 (25%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIF---GNR 191
P ++ VK G L C + S+R + P+F R
Sbjct: 9 PFPPEERPEVRVKEGKGMVL----------LCDPPYHFPDDLSYRWLLNEFPVFITMDKR 58
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD------APAF 245
+G L I V D G YS S+ S + + +P+
Sbjct: 59 RFVSQTNGN--LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116
Query: 246 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------DHPI 294
+ + D+ +G L +C A G P+
Sbjct: 117 VVQFKDVYALMGQNVTL----------ECF------------ALGNPVPDIRWRKVLEPM 154
Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
I+ G L I ++ +D G Y A N G + + V++
Sbjct: 155 PSTAE--ISTSGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 68.0 bits (166), Expect = 5e-13
Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 47/181 (25%)
Query: 77 DHPIF---GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
+ P+F R +G L I V D G YS S+ S + + +P
Sbjct: 48 EFPVFITMDKRRFVSQTNGN--LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIP 105
Query: 134 D------APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG---- 183
+ + + D+ +G L +C A G
Sbjct: 106 ERTTKPYPADIVVQFKDVYALMGQNVTL----------ECF------------ALGNPVP 143
Query: 184 -------DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
P+ I+ G L I ++ +D G Y A N G + + V+
Sbjct: 144 DIRWRKVLEPMPSTAE--ISTSGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
Query: 237 S 237
+
Sbjct: 201 A 201
Score = 52.6 bits (126), Expect = 1e-07
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 845 YKKPKFLEELKAV-LSEGGAVNLECKVIGVPQP--TLKWFKDGREL-KAGDIHKIISGED 900
Y P EE V + EG + L C + +W + + D + +S +
Sbjct: 6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65
Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAALL 926
G L G Y+C + T S + +
Sbjct: 66 GN--LYIANVEASDKGNYSCFVSSPSITKSVFSKFI 99
Score = 49.5 bits (118), Expect = 1e-06
Identities = 26/170 (15%), Positives = 43/170 (25%), Gaps = 44/170 (25%)
Query: 2 GIPTPQLI-WYKDNKKIKA---GDIFALTANPK------DPSSLGTYTCEAVNCMGAAFS 51
P W + + F N + S G Y+C +
Sbjct: 35 HFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV 94
Query: 52 TSR-------------------VIARGQQSFLDNDDVPFN-RAQG-----------DHPI 80
S+ V+ L +V A G P+
Sbjct: 95 FSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM 154
Query: 81 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
I+ G L I ++ +D G Y A N G + + V++
Sbjct: 155 PSTAE--ISTSGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 117 bits (294), Expect = 3e-28
Identities = 44/195 (22%), Positives = 69/195 (35%), Gaps = 24/195 (12%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL------KETL 802
P I+ LK+ N + P P+++W R ++ K L K
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EG 861
G L I ++++D + C A + G S +L + PKF+ S EG
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-----PKFISNQTIYYSWEG 115
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCCL----------GIYTC 910
+N+ C V P ++ W +D L A + + L G Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 911 EAHNCMGTTSSSAAL 925
A N +GT L
Sbjct: 176 TATNHIGTRFQEYIL 190
Score = 116 bits (291), Expect = 9e-28
Identities = 42/209 (20%), Positives = 66/209 (31%), Gaps = 39/209 (18%)
Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----------VYQLT 700
+P ++ ++G V+ C G P P + W + + + V
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 701 GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
G+SSL G Y C A + +G + S L IE APK
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------------------APK 102
Query: 751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG-VCHLKI 809
FI + + V +P + W RD + + + + G L+I
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEI 162
Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLK 838
D + C ATN G L
Sbjct: 163 APTSDNDFGRYNCTATNHIGTRFQEYILA 191
Score = 103 bits (259), Expect = 1e-23
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 25/219 (11%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
P I+ L + + L+ + P EI + ++ R
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE-----GDKSLDGRIE 55
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 253
+ G + L+I+ V+ D GRY A++ G L +E AP FI
Sbjct: 56 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIYY 111
Query: 254 VKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
G + +++S P I + D +P + + + L
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTT---------NLKTYSTGRKMILE 161
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
I +D GRY+ TA+N G ++ L++ VP +P
Sbjct: 162 IAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VPSSP 199
Score = 103 bits (259), Expect = 1e-23
Identities = 51/314 (16%), Positives = 98/314 (31%), Gaps = 49/314 (15%)
Query: 75 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
R + G + L+I+ V+ D GRY A++ G L +E
Sbjct: 44 TEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----Y 99
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
AP FI G + +++S P I + D +P
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTT---------NL 149
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
+ + + L I +D GRY+ TA+N G ++ L++ VP +P + ++ ++
Sbjct: 150 KTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VPSSPYGV-KIIEL 207
Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
++ V P I ++ + +T + +
Sbjct: 208 -----SQTTAKVSFNKP-----DSHGGVPI-HHYQVDVKEVASEIWKIVRSHGVQTMVVL 256
Query: 313 RRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
+ + V A N G YS + ++ + P P +
Sbjct: 257 NNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP-----------------SI 299
Query: 370 LVEIRSPTEIKIHW 383
+ S K+
Sbjct: 300 HGQPSSGKSFKLSI 313
Score = 103 bits (258), Expect = 1e-23
Identities = 58/306 (18%), Positives = 100/306 (32%), Gaps = 59/306 (19%)
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-------NKEGVVEASDKYHIMADGLG 606
I +++N L C P P I W EG + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 62
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
S+ I ++ D G + C A S G Q + Y+ + P+F+ + + +G
Sbjct: 63 S-SLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDIEYA-----PKFISNQTIYYSWEG 115
Query: 667 -LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL----------GSYCC 710
++ C V P ++ W +D L + Y L G Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTV 770
A N +G L + D+ P G+K + E + T
Sbjct: 176 TATNHIGTRFQEYILALADV------------------PSSPYGVK-----IIELSQTTA 212
Query: 771 QVSISPEP-----KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
+VS + + ++ D + V S+ KI++ + ++ LE E + A
Sbjct: 213 KVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAV 272
Query: 826 NDFGQS 831
N GQ
Sbjct: 273 NGKGQG 278
Score = 101 bits (254), Expect = 4e-23
Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 15/207 (7%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
P I+ L + + L+ + P EI + ++ R
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE-----GDKSLDGRIE 55
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 360
+ G + L+I+ V+ D GRY A++ G L +E AP FI
Sbjct: 56 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIYY 111
Query: 361 VKVGTRARLLVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYFIDLSSVSLFDSG 418
G + +++S IHW R+ L + +T G ++++ S D G
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFG 171
Query: 419 RWTCLAENAVGRSHCSCELSVL-VPKA 444
R+ C A N +G L++ VP +
Sbjct: 172 RYNCTATNHIGTRFQEYILALADVPSS 198
Score = 101 bits (254), Expect = 5e-23
Identities = 55/316 (17%), Positives = 98/316 (31%), Gaps = 46/316 (14%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-------ENKIYRTQHDG 402
P I+ L + + L+ + +I W R + +
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG 462
+ + V L DSGR+ C A + +G S L + P F + +G
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-----PKFISNQTIYYSWEG 115
Query: 463 -TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTC 510
+++ C V P + W +D + A + L + G Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 511 EAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL 570
A N +G F + DVP P G ++ + T+A +
Sbjct: 176 TATNHIGTRFQEYILALA---------DVPS---SPYGV------KIIELSQ---TTAKV 214
Query: 571 ECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSS 630
I+ Y + AS+ + I+ + +N LE E + A +
Sbjct: 215 SFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274
Query: 631 SGVKQFSAAYVHVLMP 646
G +S + +P
Sbjct: 275 KGQGDYSKIEIFQTLP 290
Score = 72.5 bits (178), Expect = 2e-13
Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 56/285 (19%)
Query: 2 GIPTPQLIWYKDNKKI----------------KAGDIFALTANPKDPSSLGTYTCEAVNC 45
G P P++ W + +L S G Y CEA +
Sbjct: 26 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 46 MGAAFSTSRVI---------ARGQQSFLDNDDVPFN-RAQGDHPIF-------------- 81
+G + + + + + + + + + P
Sbjct: 86 IGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN 145
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
+ + + L I +D GRY+ TA+N G ++ L++ VP +P + +
Sbjct: 146 TTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VPSSPYGV-K 203
Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
+ ++ ++ V P I ++ + +T
Sbjct: 204 IIEL-----SQTTAKVSFNKP-----DSHGGVPI-HHYQVDVKEVASEIWKIVRSHGVQT 252
Query: 202 ELNIRRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDAP 243
+ + + + V A N G YS + ++ + P P
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP 297
Score = 64.8 bits (158), Expect = 5e-11
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 16/95 (16%)
Query: 847 KPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGREL------KAGDIHKIISGED 900
+P ++ E G V L C G P P + W + K+ D + G+
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAAL 925
G+ L G Y CEA + +G S L
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 95
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 108 bits (272), Expect = 7e-27
Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 46/229 (20%)
Query: 447 APFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD-------------- 491
P + I+++ +L CK G PTP + WYK ++++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 492 --IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
+ K G Y C A N +G A S SL
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD------------------ASLEVAIL 110
Query: 550 APIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
F + +V +G A++ECQ P P +I W ++ D+ + G
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSPLDDKDERITIRGG---- 165
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
+ I Y D G++ CV T+ G ++ A + VL P FV++
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER-----PSFVKA 209
Score = 107 bits (270), Expect = 1e-26
Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 25/203 (12%)
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-----VK 796
L + P+ +E + E + P P + W++ ++V +
Sbjct: 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 797 ILKE-TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK 855
+L +L + D+ + C+A N G++++ L V + F +
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDA-SLEV--AILRDDFRQNPS 119
Query: 856 AVL-SEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISG----------EDGTC 903
V+ + G +EC+ G P+PT+ W KDG L D I G D
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDA-- 177
Query: 904 CLGIYTCEAHNCMGTTSSSAALL 926
G Y C N +G S A L
Sbjct: 178 --GKYVCVGTNMVGERESEVAEL 198
Score = 106 bits (266), Expect = 4e-26
Identities = 52/225 (23%), Positives = 82/225 (36%), Gaps = 48/225 (21%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-----YQLTGTSS 704
PR VE ++ G + CK G PTPT++W+K E ++ L + S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 705 L---------------GSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNNKA 748
L G Y CVA+N +G+A S L + +R
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILR----------------- 111
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
F + V E Q PEP +SW +D + + D ++ L
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG----KL 167
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE 852
I +D ++ C+ TN G S +L V ++P F++
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVG-ERESEVAELTV---LERPSFVK 208
Score = 83.7 bits (207), Expect = 3e-18
Identities = 49/224 (21%), Positives = 72/224 (32%), Gaps = 29/224 (12%)
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 295
Q P + D+ V G A L E R I+ + H
Sbjct: 5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKG-GERVETDKDDPRSH--- 60
Query: 296 GNRFRAINRDG---RTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPA 351
R + G + R R D G Y A N G + + L V
Sbjct: 61 ----RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL---RDD 113
Query: 352 FIRRLHDIAVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
F + D+ V VG A + + P E I W ++ L++ T G +
Sbjct: 114 FRQNPSDVMVAVGEPAVMECQPPRGHP-EPTISWKKDGSPLDDKDERITIRGGKLM---I 169
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCS-CELSVLVPKAYKAPFFTK 452
+ D+G++ C+ N VG EL+VL P F K
Sbjct: 170 TYTRKSDAGKYVCVGTNMVGERESEVAELTVLER-----PSFVK 208
Score = 68.7 bits (168), Expect = 3e-13
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-------------- 891
P+ +E ++S+G L CK G P PT++W+K G ++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 892 --IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL-------GFEDKSQIEKAEEGKK 942
+I+ G G+Y C A N +G S A L F G+
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 943 ALI 945
A++
Sbjct: 129 AVM 131
Score = 67.1 bits (164), Expect = 1e-12
Identities = 48/250 (19%), Positives = 76/250 (30%), Gaps = 76/250 (30%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ 60
G PTP + WYK +++ T + R
Sbjct: 34 EGRPTPTIEWYKGGERV---------------------------------ETDKDDPRSH 60
Query: 61 QSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS 120
+ L + + F R + R R D G Y A N G +
Sbjct: 61 RMLLPSGSLFFLR----------------------IVHGRKSRPDEGVYVCVARNYLGEA 98
Query: 121 -TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 179
+ L V F + D+ V VG A + +CQ + P
Sbjct: 99 VSHDASLEVAIL---RDDFRQNPSDVMVAVGEPAVM----------ECQPPRGHPEPTIS 145
Query: 180 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQ 238
+ P+ R R G +L I R+ D G+Y +N G ++ EL+V
Sbjct: 146 WKKDGSPLDDKDERITIRGG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV--L 201
Query: 239 VPDAPAFIRR 248
P+F++
Sbjct: 202 ER--PSFVKA 209
Score = 66.8 bits (163), Expect = 2e-12
Identities = 49/232 (21%), Positives = 74/232 (31%), Gaps = 34/232 (14%)
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 188
Q P + D+ V G A L E R I+ + H
Sbjct: 5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKG-GERVETDKDDPRSH--- 60
Query: 189 GNRFRAINRDG---RTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPA 244
R + G + R R D G Y A N G + + L V
Sbjct: 61 ----RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL---RDD 113
Query: 245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
F + D+ V VG A + +CQ + P + P+ R R
Sbjct: 114 FRQNPSDVMVAVGEPAVM----------ECQPPRGHPEPTISWKKDGSPLDDKDERITIR 163
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQVPDAPAFIRR 355
G +L I R+ D G+Y +N G ++ EL+V P+F++
Sbjct: 164 GG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV--LER--PSFVKA 209
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 108 bits (270), Expect = 7e-27
Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 30/196 (15%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVS--WFRDDQQVVESDNVKILKETLGVC 805
P+ + + ++ S + W ++ ++ +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN------ASNM 56
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAV 864
+I+ D E+ C+ + +++ P ++ +EG
Sbjct: 57 EYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAA-----PDITGHKRSENKNEGQDA 110
Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGEDGTCCL-----------GIYT 909
+ CK +G P P W K + + I ++ L G Y
Sbjct: 111 MMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYE 170
Query: 910 CEAHNCMGTTSSSAAL 925
C A N +G+ S S L
Sbjct: 171 CNATNSIGSASVSTVL 186
Score = 107 bits (268), Expect = 1e-26
Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 31/199 (15%)
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
Q P + I L + S T + +W +N +L R
Sbjct: 1 QNE--PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---RKNASN 55
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQ 461
Y I + DSG + C+ + V + + V P T + E
Sbjct: 56 MEYRI--NKPRAEDSGEYHCVY-HFVSAPKANATIEVKAA-----PDITGHKRSENKNEG 107
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKA--------------GDIFALT-ANPKDPSSLG 506
+ CK +G P P+ +W K + + L N + G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 507 TYTCEAVNCMGAAFSTSRV 525
Y C A N +G+A ++ +
Sbjct: 168 EYECNATNSIGSASVSTVL 186
Score = 106 bits (267), Expect = 1e-26
Identities = 42/199 (21%), Positives = 62/199 (31%), Gaps = 34/199 (17%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGY 608
P + E + L+C + YW K GV + + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWT-KNGVELTATRKN-----ASNM 56
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
IN A D GE+ CV S K + A + V P ++ ++G
Sbjct: 57 EYRINKPRAEDSGEYHCVYHFVSAPK--ANATIEVKAA-----PDITGHKRSENKNEGQD 109
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------VYQLTGTSSL-----------GSY 708
CK VG+P P W K + + + L G Y
Sbjct: 110 AMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEY 169
Query: 709 CCVAKNVMGKAESSTQLTI 727
C A N +G A ST L +
Sbjct: 170 ECNATNSIGSASVSTVLRV 188
Score = 106 bits (265), Expect = 3e-26
Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 35/207 (16%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTP--TLQWFKDNEELKPGDVYQLTGT----- 702
+PR V S + ++ D V+ +C + W K+ EL
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINK 62
Query: 703 ---SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
G Y CV V +++ + ++ AP +S
Sbjct: 63 PRAEDSGEYHCVYHFV-SAPKANATIEVKA------------------APDITGHKRSEN 103
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI----LKETLGVCHLKIHALEVA 815
++ + P P+ W + + V E + + L I L++
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT 163
Query: 816 -DQAEWKCIATNDFGQSITSCFLKLNV 841
D E++C ATN G + S L++ V
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 89.5 bits (222), Expect = 2e-20
Identities = 32/211 (15%), Positives = 62/211 (29%), Gaps = 28/211 (13%)
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIFG 296
Q P + I L +C ++ + +
Sbjct: 1 QNE--PRIVTSEEVIIRDSLLPVTL----------QCNLTSSSHTLMYSYWTKNGVELTA 48
Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 356
R E I + R +D G Y S A + V++ AP
Sbjct: 49 TR----KNASNMEYRINKPRAEDSGEYHCVYHFVSAPK-ANATIEVKA----APDITGHK 99
Query: 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI-----YRTQHDGNFYFIDLSS 411
G A + + + W + + + E + + N+ +++ +
Sbjct: 100 RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVN 159
Query: 412 VSLF-DSGRWTCLAENAVGRSHCSCELSVLV 441
+ + D G + C A N++G + S L V V
Sbjct: 160 LQITEDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 77.2 bits (190), Expect = 3e-16
Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 15/150 (10%)
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 148
E I + R +D G Y S A + V++ AP
Sbjct: 51 KNASNMEYRINKPRAEDSGEYHCVYHFVSAPK-ANATIEVKA----APDITGHKRSENKN 105
Query: 149 VGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIR 206
G A + + P E + N + G RF IN++ TELNI
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG-------RFFIINKENYTELNIV 158
Query: 207 RVR-RDDGGRYSVTASNESGYSTAKFELSV 235
++ +D G Y A+N G ++ L V
Sbjct: 159 NLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 58.3 bits (141), Expect = 8e-10
Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 33/159 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFA----LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA 57
W K+ ++ A A N G Y C + + A + + +
Sbjct: 31 SHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEV 89
Query: 58 RGQQSFL---------DNDDVPFN-RAQG-----------DHPIF------GNRFRAINR 90
+ + D ++ G ++ +F RF IN+
Sbjct: 90 KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 91 DGRTELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 128
+ TELNI ++ +D G Y A+N G ++ L V
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 111 bits (278), Expect = 1e-26
Identities = 50/333 (15%), Positives = 95/333 (28%), Gaps = 49/333 (14%)
Query: 226 YSTAKFELSVESQVPDAPAFI-RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 284
++ + L + P+ + + +G P KC ++ +
Sbjct: 12 FNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALG----------EPFSAKCPPIEDSLLSH 61
Query: 285 SFRAQGDHPIFGNRFRAINRDGRTE-----LNIRRVRR-DDGGRYSVTASNESGYSTAKF 338
+ + D+ + + R L I D RY T + ++G
Sbjct: 62 RYNDK-DNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG- 119
Query: 339 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYR 397
V S + P+ I +++ L I I WY+N+++L +
Sbjct: 120 --IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY 177
Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV-----PKAYKAPFFTK 452
+Q N + L DSGR+ C R +S P
Sbjct: 178 SQSGQNLII---HNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLIL 234
Query: 453 ELEAILTEQGTVSLECKVMGIPTPQLI----WYKDNKKIKAGDIFALTANPKDP----SS 504
+ + +T ++ C + W + I D + ++
Sbjct: 235 DPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEAT 294
Query: 505 L-----------GTYTCEAVNCMGAAFSTSRVI 526
L TYTC N T+ V+
Sbjct: 295 LYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Score = 104 bits (260), Expect = 3e-24
Identities = 36/301 (11%), Positives = 71/301 (23%), Gaps = 64/301 (21%)
Query: 668 VSFECKVVG---------FPTPTLQWFKDNEELKPGDVYQLTGT---------SSLGSYC 709
S +C + + W K + +P + G S Y
Sbjct: 47 FSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYL 106
Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
C G + K P I
Sbjct: 107 CTVTTKNGDCVQGI-----------------VRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 770 VQV-SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
+ ++W++++Q+++ K + +L IH E+ D + C D
Sbjct: 150 CGILYAKHYNNITWYKNNQELIIDGT----KYSQSGQNLIIHNPELEDSGRYDCYVHYDD 205
Query: 829 GQSITSCFLKLNV-----PKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP----TLK 879
+ + P + K + + K ++ G N+ C + +
Sbjct: 206 VRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLID 265
Query: 880 WFKDGRELKAGDIHKIISGEDGTCCL---------------GIYTCEAHNCMGTTSSSAA 924
W + D YTC HN + +
Sbjct: 266 WENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTT 325
Query: 925 L 925
+
Sbjct: 326 V 326
Score = 104 bits (259), Expect = 3e-24
Identities = 43/328 (13%), Positives = 87/328 (26%), Gaps = 41/328 (12%)
Query: 537 DDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASD 596
D +P P+ +F N A +G +C + S + +K+ VV
Sbjct: 17 DTLPAKDSKWLNPSCMFGGT-MNDMAALGEPFSAKCPP-IEDSLLSHRYNDKDNVVNWEK 74
Query: 597 KYHIMADG---LGGYSIEINYLEAVDDGEW-KCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
+ + I + D C T+ +G H+ P P
Sbjct: 75 IGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP-----P 129
Query: 653 RFVESLKAVMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGTSSL----- 705
+ + T D + C ++ + W+K+N+EL +L
Sbjct: 130 SCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNP 189
Query: 706 -----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQA 760
G Y C + ++ ++ L ++ + +
Sbjct: 190 ELEDSGRYDCYVHYDDVRIKNDIVVSR---------CKILTVIPSQDHRFKLILDPKINV 240
Query: 761 TVNEEFKFTVQVSISPEPK----VSWFRDDQQVVESDNVKILKETLGVC----HLKIHAL 812
T+ E T + + W ++ D T L +
Sbjct: 241 TIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENV 300
Query: 813 EVADQ-AEWKCIATNDFGQSITSCFLKL 839
+ C N + + + L
Sbjct: 301 TEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 102 bits (254), Expect = 2e-23
Identities = 45/327 (13%), Positives = 84/327 (25%), Gaps = 70/327 (21%)
Query: 446 KAPFFTKELEAILTEQGTVSLECKVMG---------IPTPQLIWYKD-------NKKIKA 489
+ F + + S +C + + W K N+++K
Sbjct: 29 PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN 88
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
GD++ D S Y C G + P
Sbjct: 89 GDLWIANYTSND--SHRRYLCTVTTKNGDCVQGIVRS----------------HIRKP-- 128
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
P I E + L C +L +I WY K D G +
Sbjct: 129 -PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWY-KNNQELIIDGTKYS---QSGQN 183
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA-----AYVHVLMPKNYRKPRFVESLKAVMTD 664
+ I+ E D G + C + + V+ +++R ++ V
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG 243
Query: 665 DGLVSFECKVVGFPTP----TLQWFKDNEELKPGDVYQLT--------GTSSL------- 705
+ + C V + W + + D + ++L
Sbjct: 244 EP-ANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTE 302
Query: 706 ----GSYCCVAKNVMGKAESSTQLTIE 728
+Y C N +T + +E
Sbjct: 303 EYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 88.0 bits (217), Expect = 9e-19
Identities = 43/346 (12%), Positives = 89/346 (25%), Gaps = 54/346 (15%)
Query: 119 YSTAKFELSVESQVPDAPAFI-RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 177
++ + L + P+ + + +G P KC ++ +
Sbjct: 12 FNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALG----------EPFSAKCPPIEDSLLSH 61
Query: 178 SFRAQGDHPIFGNRFRAINRDGRTE-----LNIRRVRR-DDGGRYSVTASNESGYSTAKF 231
+ + D+ + + R L I D RY T + ++G
Sbjct: 62 RYNDK-DNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG- 119
Query: 232 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRA 288
V S + P+ I +++ L I I +
Sbjct: 120 --IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKN----------- 166
Query: 289 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-- 346
+ + + + L I +D GRY + +S +
Sbjct: 167 --NQELIIDGTKYSQSGQN--LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTV 222
Query: 347 ---PDAPAFIRRLHDIAVKVGTRARLLVEIRS----PTEIKIHWYRNDRKLE--ENKIYR 397
D + I V +G A + S ++ I W + + +Y
Sbjct: 223 IPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYS 282
Query: 398 TQHDGNFYFID---LSSVSLFDSGRW-TCLAENAVGRSHCSCELSV 439
+V+ G TC N + + +
Sbjct: 283 ILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 81.4 bits (200), Expect = 1e-16
Identities = 38/264 (14%), Positives = 63/264 (23%), Gaps = 41/264 (15%)
Query: 96 LNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 154
L I D RY T + ++G V S + P+ I +++
Sbjct: 91 LWIANYTSNDSHRRYLCTVTTKNGDCVQG---IVRSHIRKPPSCIPETYELGTHDKYGID 147
Query: 155 LLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
L I I + + + + + L I +
Sbjct: 148 LYCGILYAKHYNNITWYKN-------------NQELIIDGTKYSQSGQN--LIIHNPELE 192
Query: 212 DGGRYSVTASNESGYSTAKFELSVESQV-----PDAPAFIRRLHDIAVKVGTRARLLVEI 266
D GRY + +S + D + I V +G A +
Sbjct: 193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA 252
Query: 267 R------SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD- 319
I + I F G A L V +
Sbjct: 253 VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEAT-------LYFENVTEEYI 305
Query: 320 GGRYSVTASNESGYSTAKFELSVE 343
G Y+ N T + +E
Sbjct: 306 GNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 74.1 bits (181), Expect = 4e-14
Identities = 36/220 (16%), Positives = 67/220 (30%), Gaps = 40/220 (18%)
Query: 728 EDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT---------VQVSISPEP 778
+R+ L +D L N + F G + A + E F +
Sbjct: 13 NKMRDTLPAKDSKWL---NPSCMFG-GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDN 68
Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD-QAEWKCIATNDFGQSITSCFL 837
V+W + + N ++ L I D + C T G + +
Sbjct: 69 VVNWEKIGKTR-RPLNRRVKNGDL-----WIANYTSNDSHRRYLCTVTTKNGDCVQG-IV 121
Query: 838 KLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKI 895
+ ++ K P + E + + ++L C ++ + W+K+ +EL
Sbjct: 122 RSHI---RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYS 178
Query: 896 ISG----------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
SG ED G Y C H + +
Sbjct: 179 QSGQNLIIHNPELEDS----GRYDCYVHYDDVRIKNDIVV 214
Score = 68.7 bits (167), Expect = 2e-12
Identities = 35/277 (12%), Positives = 58/277 (20%), Gaps = 53/277 (19%)
Query: 2 GIPTPQLIWYKD-------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR 54
+ W K N+++K GD++ D S Y C G
Sbjct: 64 NDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSND--SHRRYLCTVTTKNGDCVQGIV 121
Query: 55 VIARGQQSFLDNDDVPFNRAQGD-----------------------HPIFGNRFRAINRD 91
+ + + + +
Sbjct: 122 RSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSG 181
Query: 92 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-----PDAPAFIRRLHDIA 146
L I +D GRY + +S + D + I
Sbjct: 182 QN--LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN 239
Query: 147 VKVGTRARLLVEIR------SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 200
V +G A + I + I F G A
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEAT----- 294
Query: 201 TELNIRRVRRDD-GGRYSVTASNESGYSTAKFELSVE 236
L V + G Y+ N T + +E
Sbjct: 295 --LYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 44.8 bits (105), Expect = 9e-05
Identities = 18/182 (9%), Positives = 45/182 (24%), Gaps = 37/182 (20%)
Query: 824 ATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV---------P 874
N ++ + K P F + + + G + +C I
Sbjct: 11 FFNKMRDTLPAKDSKWLNPS----CMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDK 66
Query: 875 QPTLKWFKDGRELKAGD---------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+ W K G+ + + I S + Y C G
Sbjct: 67 DNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSH----RRYLCTVTTKNGDCVQGIVR 122
Query: 926 LGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGKEVS 985
+ + ++ ++Y + + I++ + +E+
Sbjct: 123 SHIRKPPS-----------CIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI 171
Query: 986 VS 987
+
Sbjct: 172 ID 173
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 107 bits (269), Expect = 5e-26
Identities = 44/278 (15%), Positives = 74/278 (26%), Gaps = 58/278 (20%)
Query: 668 VSFECKVVG-FPTP--TLQWFKDNEELKP-----GDVYQLTGTSSL-------GSYCCVA 712
+ C + G FP + ++ L P D + + S+ C
Sbjct: 21 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAV 80
Query: 713 KNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQV 772
E+ +TI P L + + E +
Sbjct: 81 ILGNQSQETLQTVTI------------------YSFPAPNVILTKPEVSEGTEVTVKCEA 122
Query: 773 SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
P KV+ Q + L + A + + C AT + +
Sbjct: 123 H--PRAKVTLNGVPAQPLGPRA-----------QLLLKATPEDNGRSFSCSATLEVAGQL 169
Query: 833 T--SCFLKLNVPKHYKKPKFLEELK---AVLSEGGAVNLECKVIGVPQPTLKWFKDGREL 887
+ +L V Y P+ E E C+ G P P LK KDG
Sbjct: 170 IHKNQTRELRV--LYG-PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226
Query: 888 KAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
++ + G Y C A + G + +
Sbjct: 227 LPIGESVTVTRDLE----GTYLCRARSTQGEVTREVTV 260
Score = 91.7 bits (227), Expect = 2e-20
Identities = 36/291 (12%), Positives = 81/291 (27%), Gaps = 43/291 (14%)
Query: 156 LVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 213
++E+ + + C D + + A GD + + +
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT 73
Query: 214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 273
R + + +++ S PA L V GT + K
Sbjct: 74 QRLTCAVILGNQSQETLQTVTIYS----FPAPNVILTKPEVSEGTEVTV----------K 119
Query: 274 CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY 333
C+ + + P+ R +L ++ D+G +S +A+ E
Sbjct: 120 CEA--HPRAKVTLNGVPAQPL----------GPRAQLLLKATPEDNGRSFSCSATLEVAG 167
Query: 334 STAKFELSVESQVPDAPAFIRRLH--DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE 391
+ E +V P R + ++ + + ++ ++
Sbjct: 168 QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227
Query: 392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ +V+ G + C A + G ++VL P
Sbjct: 228 PIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
Score = 88.6 bits (219), Expect = 2e-19
Identities = 35/290 (12%), Positives = 77/290 (26%), Gaps = 59/290 (20%)
Query: 458 LTEQGT-VSLECKVMGI---PTPQLIWYKDNKKIKA-----GD----IFALTANPKDPSS 504
+ E T ++ C + G+ Q+ ++++ D +++ +D
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAED-EG 72
Query: 505 LGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
TC + + + V P + +
Sbjct: 73 TQRLTCAVILGNQSQETLQTVTIYS--------------------FPAPNVILTKPEVSE 112
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
GT ++C+ + + + + +
Sbjct: 113 GTEVTVKCEAHPRA---KVTLNGVPAQPLG-----------PRAQLLLKATPEDNGRSFS 158
Query: 625 CVAT---SSSGVKQFSAAYVHVLMPKNYRKPRFVESLK---AVMTDDGLVSFECKVVGFP 678
C AT + + + + VL PR E ++ + C+ G P
Sbjct: 159 CSATLEVAGQLIHKNQTRELRVLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNP 213
Query: 679 TPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIE 728
P L+ KD P G+Y C A++ G+ + +
Sbjct: 214 LPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 87.4 bits (216), Expect = 4e-19
Identities = 41/274 (14%), Positives = 76/274 (27%), Gaps = 36/274 (13%)
Query: 263 LVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
++E+ + + C D + + A GD + + +
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT 73
Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 380
R + + +++ S PA L V GT + E ++
Sbjct: 74 QRLTCAVILGNQSQETLQTVTIYS----FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 129
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC----SCE 436
++ ++ L + + ++C A V + E
Sbjct: 130 LNGVPAQPLGPRAQL------------LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
Query: 437 LSVLVPKAYKAPFFTKEL---EAILTEQGTVSLECKVMGIPTPQLIWYKD-NKKIKAGDI 492
L VL P + E + C+ G P P+L KD + G+
Sbjct: 178 LRVLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES 232
Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
+T GTY C A + G V
Sbjct: 233 VTVT-----RDLEGTYLCRARSTQGEVTREVTVN 261
Score = 76.2 bits (187), Expect = 3e-15
Identities = 39/305 (12%), Positives = 79/305 (25%), Gaps = 46/305 (15%)
Query: 544 LMPPGPAPIFIKEVENVKAKIGTSAILECQV--LVPPWPRSIYWYNKEGVVEASDKYHIM 601
++P P + V ++ T + C + L P ++ + + + Y
Sbjct: 1 VLPATPPQLVSPRV----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN- 55
Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
D + E C + ++ V + Y P L
Sbjct: 56 -DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ-TVTI-----YSFPAPNVILTKP 108
Query: 662 MTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-YQLTGTSSLGSYCCVAKNVMGKA 719
+G V+ +C+ TL + + T + S+ C A +
Sbjct: 109 EVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQ 168
Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNE--EFKFTVQVSISPE 777
T E L P+ E T E + Q +P
Sbjct: 169 LIHKNQTRE--------------LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL 214
Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
P++ +D + + + + C A + G+ +
Sbjct: 215 PELKCLKDGTFPLPIGE--------------SVTVTRDLEGTYLCRARSTQGEVTREVTV 260
Query: 838 KLNVP 842
+ P
Sbjct: 261 NVLSP 265
Score = 75.1 bits (184), Expect = 7e-15
Identities = 40/281 (14%), Positives = 75/281 (26%), Gaps = 55/281 (19%)
Query: 68 DVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS 127
+ + A GD + + + R + + ++
Sbjct: 35 EAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 94
Query: 128 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI 187
+ S PA L V GT + KC+ + + P+
Sbjct: 95 IYS----FPAPNVILTKPEVSEGTEVTV----------KCEA--HPRAKVTLNGVPAQPL 138
Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
R +L ++ D+G +S +A+ E + E +V P
Sbjct: 139 ----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDE 188
Query: 248 RLH--DIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 303
R + ++ + + E+KC D +P
Sbjct: 189 RDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-------------------- 228
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
V RD G Y A + G T + ++V S
Sbjct: 229 -----IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 68.2 bits (166), Expect = 1e-12
Identities = 38/248 (15%), Positives = 73/248 (29%), Gaps = 44/248 (17%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV-------- 55
P + + D+ KA +++ +D TC + + + V
Sbjct: 47 LNPTVTYGNDSFSAKA----SVSVTAED-EGTQRLTCAVILGNQSQETLQTVTIYSFPAP 101
Query: 56 -IARGQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 113
+ + + +V A + N A R +L ++ D+G +S +A
Sbjct: 102 NVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSA 161
Query: 114 SNESGYSTAKFELSVESQVPDAPAFIRRLH--DIAVKVGTRARLLVEIRS--PTEIKCQF 169
+ E + E +V P R + ++ + + E+KC
Sbjct: 162 TLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK 221
Query: 170 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 229
D +P V RD G Y A + G T
Sbjct: 222 DGTFPLP-------------------------IGESVTVTRDLEGTYLCRARSTQGEVTR 256
Query: 230 KFELSVES 237
+ ++V S
Sbjct: 257 EVTVNVLS 264
Score = 39.7 bits (92), Expect = 0.003
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 2 GIPTPQLIWYKD-NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
G P P+L KD + G+ +T GTY C A + G V
Sbjct: 211 GNPLPELKCLKDGTFPLPIGESVTVT-----RDLEGTYLCRARSTQGEVTREVTVN 261
Score = 37.7 bits (87), Expect = 0.012
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 17/83 (20%)
Query: 857 VLSEGGAVNLECKVIGV---PQPTLKWFKDGRELK-----------AGDIHKIISGEDGT 902
VL + C + G+ + + + L A + + ++GT
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT 73
Query: 903 CCLGIYTCEAHNCMGTTSSSAAL 925
TC + + +
Sbjct: 74 ---QRLTCAVILGNQSQETLQTV 93
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 105 bits (264), Expect = 4e-25
Identities = 40/294 (13%), Positives = 77/294 (26%), Gaps = 33/294 (11%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
+ + ++ +L C + W E + DG + + L
Sbjct: 8 PELVLNVSSTFVLTCSG-----SAPVVWERMSQ--EPPQEMAKAQDGTFSSVLTLTNLTG 60
Query: 618 VDDGEWKCVATSSSGVKQFSAA--YVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVV 675
+D GE+ C S G++ Y+ V P P E L +T+ ++ C+V
Sbjct: 61 LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120
Query: 676 GFPTPTLQWFKDNEELKPGDVYQL----TGTSSLGSYCCVAKNVMGKAESSTQLTIEDIR 731
P + + ++ Y +G SY C + +S
Sbjct: 121 D-PQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVY---- 175
Query: 732 NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQ--- 788
+ E V + W ++
Sbjct: 176 -----------RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR 224
Query: 789 -VVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
V + + L I + E+ D + C T + + V
Sbjct: 225 LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Score = 100 bits (250), Expect = 2e-23
Identities = 46/301 (15%), Positives = 82/301 (27%), Gaps = 61/301 (20%)
Query: 455 EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL--------- 505
E +L T L C + ++W + +++ A S L
Sbjct: 9 ELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFS--SVLTLTNLTGLD 62
Query: 506 -GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
G Y C + G + + VP P E +
Sbjct: 63 TGEYFCTHNDSRGLETDERKRL---------YIFVP----DPTVGFLPNDAEELFIFLTE 109
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
T + C+V P + + K+G + D G+S +D +
Sbjct: 110 ITEITIPCRVTDPQ-LV-VTLHEKKG----DVALPVPYDHQRGFSGIF------EDRSYI 157
Query: 625 CVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQW 684
C T A YV+ L + V +++ V+ ++ C V+G +W
Sbjct: 158 CKTTIGDREVDSDAYYVYRLQVSSI--NVSVNAVQTVVRQGENITLMCIVIGNEVVNFEW 215
Query: 685 FKDNEELK--------PGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLT 726
+E S L G+Y C + + +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Query: 727 I 727
I
Sbjct: 276 I 276
Score = 98.6 bits (245), Expect = 1e-22
Identities = 43/295 (14%), Positives = 91/295 (30%), Gaps = 32/295 (10%)
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
++ + V + L +P + W R ++ + ++ + Q + L++++ D+
Sbjct: 9 ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-EMAKAQDGTFSSVLTLTNLTGLDT 63
Query: 418 GRWTCLAENAVGRSHC---SCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP 474
G + C ++ G + V P P +EL LTE +++ C+V P
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-P 122
Query: 475 TPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFL 534
+ ++ + + +Y C+ S + + R
Sbjct: 123 QLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYR------ 176
Query: 535 DNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY----NKEG 590
+ + G + L C V+ + W
Sbjct: 177 -----------LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVV-NFEWTYPRKESGR 224
Query: 591 VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA-YVHVL 644
+VE + + + I E D G + C T S Q A + V+
Sbjct: 225 LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV 279
Score = 97.5 bits (242), Expect = 2e-22
Identities = 37/284 (13%), Positives = 72/284 (25%), Gaps = 53/284 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG--TSSL----------GSYCCVAKNV 715
C + + W + ++E G +S L G Y C +
Sbjct: 18 FVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS 73
Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS 775
G + + + + L N+ FI T E +V+
Sbjct: 74 RGLETDERKRLYIFVP-----DPTVGFLPNDAEELFI------FLTEITEITIPCRVT-D 121
Query: 776 PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835
P+ V+ V + + + + C T + +
Sbjct: 122 PQLVVTLHEKKGDVALPVPY----------DHQRGFSGIFEDRSYICKTTIGDREVDSDA 171
Query: 836 FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI 895
+ + + ++ V+ +G + L C VIG +W +E
Sbjct: 172 YYVYRLQVSSINVS-VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230
Query: 896 ISGEDGTCCL--------------GIYTCEAHNCMGTTSSSAAL 925
D + G YTC + A+
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Score = 96.7 bits (240), Expect = 5e-22
Identities = 41/282 (14%), Positives = 77/282 (27%), Gaps = 35/282 (12%)
Query: 262 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 321
L++ + S + C P + P L + + D G
Sbjct: 10 LVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTG 64
Query: 322 RYSVTASNESGYSTAKFELSVESQVPDAPA-FIRRLHD---IAVKVGTRARLLVEIRSPT 377
Y T ++ G T + + VPD F+ + I + T + + P
Sbjct: 65 EYFCTHNDSRGLETDE-RKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDP- 122
Query: 378 EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437
++ + + + Y Q +F+ + C R S
Sbjct: 123 QLVVTLHEKKGDVALPVPYDHQ---------RGFSGIFEDRSYICKTTIG-DREVDSDAY 172
Query: 438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG----DIF 493
V + ++ ++ + ++L C V+G W K+ F
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDF 232
Query: 494 ALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRV 525
L S L GTYTC + +
Sbjct: 233 LLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Score = 80.1 bits (197), Expect = 2e-16
Identities = 37/293 (12%), Positives = 80/293 (27%), Gaps = 30/293 (10%)
Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 214
L++ + S + C P + P L + + D G
Sbjct: 10 LVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTG 64
Query: 215 RYSVTASNESGYSTAKFELSVESQVPDAPA-FIRRLHDIAVKVGTRARLLVEIRSPTEIK 273
Y T ++ G T + + VPD F+ + + + + I
Sbjct: 65 EYFCTHNDSRGLETDE-RKRLYIFVPDPTVGFLPNDAEELF-------IFLTEITEITIP 116
Query: 274 CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY 333
C+ + + + + + ++ G + + + Y +
Sbjct: 117 CRVT-DPQLVVTLHEKKGDVALPVPYD--HQRGFSGIF-------EDRSYICKTTIGDRE 166
Query: 334 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393
+ QV + V+ G L+ + + W ++
Sbjct: 167 VDSDAYYVYRLQVS-SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL 225
Query: 394 KIYRTQHDGNFYFIDLS-----SVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
T + + S S L DSG +TC +V +++ V
Sbjct: 226 VEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Score = 67.4 bits (164), Expect = 3e-12
Identities = 27/260 (10%), Positives = 69/260 (26%), Gaps = 28/260 (10%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA-FIRRLHDIAVKVGTRAR 154
L + + D G Y T ++ G T + + VPD F+ +
Sbjct: 53 LTLTNLTGLDTGEYFCTHNDSRGLETDE-RKRLYIFVPDPTVGFLPNDAEELF------- 104
Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 214
+ + + I C+ + + + + + ++ G + + +
Sbjct: 105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYD--HQRGFSGIF-------EDR 154
Query: 215 RYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKC 274
Y + + QV + V+ G L+ + +
Sbjct: 155 SYICKTTIGDREVDSDAYYVYRLQVS-SINVSVNAVQTVVRQGENITLMCIVIGNEVVNF 213
Query: 275 QFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS 334
++ + R+ L+I +D G Y+ +
Sbjct: 214 EWTYPRKESGRLVEPVTDFLLDMP-----YHIRSILHIPSAELEDSGTYTCNVTESVNDH 268
Query: 335 TAKFELSVESQVPDAPAFIR 354
+ +++ V +
Sbjct: 269 QDEKAINI--TVVE-SGHHH 285
Score = 67.0 bits (163), Expect = 5e-12
Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 6/161 (3%)
Query: 769 TVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
T ++ S V W R Q+ + V L + L D E+ C +
Sbjct: 17 TFVLTCSGSAPVVWERMSQEPPQEMAKAQDGTFSSV--LTLTNLTGLDTGEYFCTHNDSR 74
Query: 829 GQ---SITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR 885
G ++ + P P EEL L+E + + C+V PQ + +
Sbjct: 75 GLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKG 133
Query: 886 ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
++ + G G Y C+ S A +
Sbjct: 134 DVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174
Score = 60.5 bits (146), Expect = 7e-10
Identities = 25/272 (9%), Positives = 63/272 (23%), Gaps = 40/272 (14%)
Query: 5 TPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSR 54
+ ++W + +++ A S L G Y C + G +
Sbjct: 25 SAPVVWERMSQEPPQEMAKAQDGTFS--SVLTLTNLTGLDTGEYFCTHNDSRGLETDERK 82
Query: 55 VI----ARGQQSFL--DNDDVPFNRAQGD---------HP----IFGNRFRAINRDGRTE 95
+ FL D +++ + P + + +
Sbjct: 83 RLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYD 142
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
+ Y + + QV + V+ G L
Sbjct: 143 HQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS-SINVSVNAVQTVVRQGENITL 201
Query: 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
+ + + ++ + R+ L+I +D G
Sbjct: 202 MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP-----YHIRSILHIPSAELEDSGT 256
Query: 216 YSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
Y+ + + +++ V +
Sbjct: 257 YTCNVTESVNDHQDEKAINI--TVVE-SGHHH 285
Score = 53.6 bits (128), Expect = 1e-07
Identities = 14/168 (8%), Positives = 37/168 (22%), Gaps = 33/168 (19%)
Query: 3 IPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR---- 58
P + ++ + + +Y C+ S + + R
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS 180
Query: 59 --------GQQSFLDNDDVPFN-RAQGDHPI-------------FGNRFRAINRDGRTE- 95
Q +++ G+ + D
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
Query: 96 ---LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
L+I +D G Y+ + + +++ V +
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI--TVVE-SGHHH 285
Score = 42.0 bits (98), Expect = 6e-04
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 12/78 (15%)
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIY 908
VL+ L C + W + +E L G Y
Sbjct: 11 VLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 909 TCEAHNCMGTTSSSAALL 926
C ++ G + L
Sbjct: 67 FCTHNDSRGLETDERKRL 84
Score = 33.9 bits (77), Expect = 0.21
Identities = 12/68 (17%), Positives = 15/68 (22%), Gaps = 14/68 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAG----DIFALTANPKDPSSL----------GTYTCEAVNCMG 47
G W K+ F L S L GTYTC +
Sbjct: 207 GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVN 266
Query: 48 AAFSTSRV 55
+
Sbjct: 267 DHQDEKAI 274
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 104 bits (260), Expect = 1e-24
Identities = 46/312 (14%), Positives = 84/312 (26%), Gaps = 54/312 (17%)
Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDN--KKIKAGDIFALTAN 498
P P ++ E G T+SL C + W ++
Sbjct: 7 PGEPSPPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEMVENKKNEWIQE 62
Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVE 558
+ + GTYTC N + ++ + PA +F+
Sbjct: 63 KAEATRTGTYTCSNSNGLTSSIY----------------------VFVRDPAKLFLVG-L 99
Query: 559 NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAV 618
+ K + A++ C + P +G +D + + G +I N A
Sbjct: 100 PLFGKEDSDALVRCPLTDPQVS-QYSLIECDGKSLPTDLTFVP-NPKAGITI-KNVKRAY 156
Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP 678
+C A + V V ++ + C +
Sbjct: 157 HRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS 216
Query: 679 TP-TLQWFKDNEELKPG----------DVYQLTGTSSL----------GSYCCVAKNVMG 717
T W K N + + + +L G + C A N G
Sbjct: 217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFG 276
Query: 718 KAESSTQLTIED 729
A +T L + +
Sbjct: 277 SANVTTTLKVVE 288
Score = 99.0 bits (246), Expect = 7e-23
Identities = 51/316 (16%), Positives = 83/316 (26%), Gaps = 54/316 (17%)
Query: 543 SLMPPGPA-PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM 601
S P P+ P + + G + L C P + W K E +
Sbjct: 4 SASPGEPSPPSIHPAQSELIVEAGDTLSLTCID-----PDFVRWTFKTYFNEMVENKK-- 56
Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
EA G + C ++ S+ YV V P F+ L
Sbjct: 57 ------NEWIQEKAEATRTGTYTCSNSNGLT----SSIYVFVRDPAK----LFLVGLPLF 102
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD------------VYQLTGTSSLGSYC 709
+D C + + + + P D + +
Sbjct: 103 GKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR 162
Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
C A+ G S + T++ P S + F
Sbjct: 163 CAAQR-DGTWLHSDKFTLKVREAI------------KAIPVVSVPETSHLLKKGDTFTVV 209
Query: 770 VQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCH------LKIHALEVADQAEWKC 822
+ +S W + + Q VK G + L I + V D + C
Sbjct: 210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMC 269
Query: 823 IATNDFGQSITSCFLK 838
A N FG + + LK
Sbjct: 270 YANNTFGSANVTTTLK 285
Score = 99.0 bits (246), Expect = 8e-23
Identities = 40/277 (14%), Positives = 74/277 (26%), Gaps = 30/277 (10%)
Query: 176 PFSFRAQGDHPI---FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 232
S + F F + + + E + G Y+ + SN S F
Sbjct: 29 TLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF- 87
Query: 233 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH 292
V D + K S ++C +S
Sbjct: 88 ------VRDPAKLFLVGLPLFGKED----------SDALVRCPLTDPQVSQYSLIECDGK 131
Query: 293 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPA 351
+ + + R A + + KF L V + P
Sbjct: 132 SLPTDL-TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV 190
Query: 352 FIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID-- 408
+K G ++ I+ T + W + + + + + F
Sbjct: 191 VSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYER 250
Query: 409 -----LSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+SS + DSG + C A N G ++ + L V+
Sbjct: 251 QETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 96.7 bits (240), Expect = 5e-22
Identities = 45/318 (14%), Positives = 82/318 (25%), Gaps = 48/318 (15%)
Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH 400
S P P+ ++ V+ G L + W E
Sbjct: 4 SASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEM-------V 52
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTE 460
+ +G +TC N + S + V P A F L E
Sbjct: 53 ENKKNEWIQEKAEATRTGTYTCSNSNGLTSS---IYVFVRDP----AKLFLVGLPLFGKE 105
Query: 461 QGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA--------LTANPKDPSSLGTYTCEA 512
+ C + Q + + K D+ N K C A
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAA 165
Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
G + + + ++ P+ + K G + + C
Sbjct: 166 QR-DGTWLHSDKFTLKVRE--------------AIKAIPVVSVPETSHLLKKGDTFTVVC 210
Query: 573 QVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGYSIE----INYLEAVDDGEWKCV 626
+ + W N + A K++ G Y + I+ D G + C
Sbjct: 211 TIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCY 270
Query: 627 ATSSSGVKQFSAAYVHVL 644
A ++ G + + V+
Sbjct: 271 ANNTFGSANVT-TTLKVV 287
Score = 95.6 bits (237), Expect = 1e-21
Identities = 43/302 (14%), Positives = 85/302 (28%), Gaps = 46/302 (15%)
Query: 646 PKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
P P + ++ + G +S C F T + + + + + +
Sbjct: 7 PGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEA 66
Query: 705 L--GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV 762
G+Y C N SS + + D K
Sbjct: 67 TRTGTYTCSNSN---GLTSSIYVFVRD------------------PAKLFLVGLPLFGKE 105
Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
+ + ++ + S D + + +D + G+ + + +C
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGI--TIKNVKRAYHRLCVRC 163
Query: 823 IATNDFGQSITSCFLKLNVPKHYKKPK--FLEELKAVLSEGGAVNLECKVIGVPQP-TLK 879
A D G + S L V + K + E +L +G + C + V
Sbjct: 164 AAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222
Query: 880 WFKDGRELKAGDIHKIISGEDGTCCL----------------GIYTCEAHNCMGTTSSSA 923
W K + + K S G G++ C A+N G+ + +
Sbjct: 223 WLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTT 282
Query: 924 AL 925
L
Sbjct: 283 TL 284
Score = 89.0 bits (220), Expect = 2e-19
Identities = 41/273 (15%), Positives = 70/273 (25%), Gaps = 26/273 (9%)
Query: 75 QGDHPI---FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
+ F F + + + E + G Y+ + SN S F
Sbjct: 35 IDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF------- 87
Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
V D + K S ++C +S + +
Sbjct: 88 VRDPAKLFLVGLPLFGKED----------SDALVRCPLTDPQVSQYSLIECDGKSLPTDL 137
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLH 250
+ R A + + KF L V + P
Sbjct: 138 -TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPET 196
Query: 251 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
+K G ++ I+ T + + N P + F N + +
Sbjct: 197 SHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDF---NYERQET 253
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
L I R DD G + A+N G + L V
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 70.5 bits (172), Expect = 3e-13
Identities = 38/255 (14%), Positives = 65/255 (25%), Gaps = 29/255 (11%)
Query: 5 TPQLIWYKDN--KKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAF------------ 50
+ W ++ + + GTYTC N + ++
Sbjct: 37 PDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFL 96
Query: 51 -STSRVIARGQQSFL-------DNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVR 102
+ + G F + G T N+ R
Sbjct: 97 VGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNV--KR 154
Query: 103 RDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 161
A + + KF L V + P +K G ++ I+
Sbjct: 155 AYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKD 214
Query: 162 -PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 220
T + + N P + F N + + L I R DD G + A
Sbjct: 215 VSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDF---NYERQETLTISSARVDDSGVFMCYA 271
Query: 221 SNESGYSTAKFELSV 235
+N G + L V
Sbjct: 272 NNTFGSANVTTTLKV 286
Score = 63.2 bits (153), Expect = 9e-11
Identities = 25/190 (13%), Positives = 35/190 (18%), Gaps = 35/190 (18%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
P + T V W +N K
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDP----DFVRWTFKTYFNEMVENKKN--------EWI 60
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLEC 868
E + C +N SI + V FL L E + C
Sbjct: 61 QEKAEATRTGTYTCSNSNGLTSSIY-----VFV--RDPAKLFLVGLPLFGKEDSDALVRC 113
Query: 869 KVIGVPQPTLKWFK-DGRELKAGD-----------IHKIISGEDGTCCLGIYTCEAHNCM 916
+ + DG+ L I + C A
Sbjct: 114 PLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR----LCVRCAAQRDG 169
Query: 917 GTTSSSAALL 926
S L
Sbjct: 170 TWLHSDKFTL 179
Score = 46.6 bits (110), Expect = 2e-05
Identities = 26/170 (15%), Positives = 37/170 (21%), Gaps = 43/170 (25%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFA--------LTANPKDPSSLGTYTCEAVNCMGAAFS-- 51
Q + + K D+ N K C A S
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK 176
Query: 52 -------------------TSRVIARGQQSFL----DNDDVP------FNRAQGDHPIFG 82
TS ++ +G + + Q H
Sbjct: 177 FTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQV 236
Query: 83 NRFRAINRDGRTE----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
D E L I R DD G + A+N G + L V
Sbjct: 237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 104 bits (261), Expect = 1e-24
Identities = 36/289 (12%), Positives = 68/289 (23%), Gaps = 37/289 (12%)
Query: 668 VSFECKVVGFPTPT-----LQWFKDNEELKPGDVYQLTGTSSLGSY-CCVAKNVMGKAES 721
V+ C + L W + E +Q G S S +G
Sbjct: 18 VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 77
Query: 722 STQLTIEDIR-------------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKF 768
+ L + +R + L P+ ++ Q T
Sbjct: 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 137
Query: 769 TVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVC--HLKIHALEVADQAEWKCIAT 825
+ P +++W D + + V + D C
Sbjct: 138 RCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVE 197
Query: 826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPT-LKWFKD 883
++ + + L V +Y + L C P+PT W
Sbjct: 198 HESFEKPQLLTVNLTV--YYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTT 255
Query: 884 GRELKAGDIHK----IISG---EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
L + + +I C N +G + +
Sbjct: 256 MGPLPPFAVAQGAQLLIRPVDKPIN----TTLICNVTNALGARQAELTV 300
Score = 104 bits (260), Expect = 2e-24
Identities = 47/335 (14%), Positives = 88/335 (26%), Gaps = 79/335 (23%)
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWP----RSIYWYNKEGVVEASDKYHI------- 600
+ ++ V +G S L C + VP + W + G + +H
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWA-RHGESGSMAVFHQTQGPSYS 60
Query: 601 -----------MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY 649
+ L S+ + L D+G + C+ + + ++ VL
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK--- 117
Query: 650 RKPRFVESLKAV-MTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQ------LTG 701
P+ ++ V +T + + C G P + W D + +T
Sbjct: 118 --PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF 751
TS + C ++ + + +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT---------------VYYPPEVS 220
Query: 752 IEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQV----VESDNVKILKETLGVCH 806
I G + E T +PEP +W + V
Sbjct: 221 ISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ----------- 269
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L I ++ C TN G L + V
Sbjct: 270 LLIRPVDKPINTTLICNVTNALGARQAE--LTVQV 302
Score = 92.9 bits (230), Expect = 1e-20
Identities = 41/324 (12%), Positives = 77/324 (23%), Gaps = 46/324 (14%)
Query: 138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQF--------DLNNTIPFSFRAQGDHPIFG 189
++ + +G L ++ P + ++ + QG
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 190 NRFRAINRDGRTE-----LNIRRVRRDDGGRYS-VTASNESGYSTAKFELSVESQVPDAP 243
R + E L + +R +D G Y+ + + G + L V P
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV--LAK--P 118
Query: 244 AFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
+ + + P +I D +
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD-------------LGGMPNTSQV 165
Query: 301 AINRDGRT----ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 356
G + + DG + +ES +++ P I
Sbjct: 166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP-EVSISGY 224
Query: 357 HDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF 415
+ A L + RS P +W L G I V
Sbjct: 225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP----FAVAQGAQLLI--RPVDKP 278
Query: 416 DSGRWTCLAENAVGRSHCSCELSV 439
+ C NA+G + V
Sbjct: 279 INTTLICNVTNALGARQAELTVQV 302
Score = 89.0 bits (220), Expect = 2e-19
Identities = 49/330 (14%), Positives = 88/330 (26%), Gaps = 68/330 (20%)
Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPTE-----IKIHWYRNDRKLEENKIYRTQH------ 400
++ + +G L ++ P ++ W R+ ++TQ
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 401 ------------DGNFYFIDLSSVSLFDSGRWTCLAENAV-GRSHCSCELSVLVPKAYKA 447
+ + + + + D G +TCL G L VL
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK----- 117
Query: 448 PFFTKEL-EAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALTANPKDP--S 503
P T E+ + LT + C G P Q+ W+ D + + S
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177
Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
TC+ + V V + P +
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL----------TVYY-------PPEVS 220
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
I +N A L C P P W G + + + + I
Sbjct: 221 ISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP---PFAVAQGA----QLLIR 273
Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
++ + C T++ G +Q V V
Sbjct: 274 PVDKPINTTLICNVTNALGARQAE-LTVQV 302
Score = 81.3 bits (200), Expect = 1e-16
Identities = 42/288 (14%), Positives = 72/288 (25%), Gaps = 52/288 (18%)
Query: 71 FNRAQGDHPIFGNRFRAINRDGRTE-----LNIRRVRRDDGGRYS-VTASNESGYSTAKF 124
F++ QG R + E L + +R +D G Y+ + + G +
Sbjct: 51 FHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDI 110
Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRA 181
L V P + + + P +I D
Sbjct: 111 WLRV--LAK--PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD----------- 155
Query: 182 QGDHPIFGNRFRAINRDGRT----ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+ G + + DG + +ES +++
Sbjct: 156 --LGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPI 294
P I + A L + RS PT +P AQG
Sbjct: 214 YYPP-EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTT-MGPLPPFAVAQG---- 267
Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+L IR V + +N G A+ + V
Sbjct: 268 -------------AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 52.0 bits (124), Expect = 4e-07
Identities = 19/159 (11%), Positives = 35/159 (22%), Gaps = 32/159 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDP--SSL----------GTYTCEAVNCMGAA 49
G P Q+ W+ D + + S TC+ +
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203
Query: 50 FSTSRV------------IARGQQSFLDNDDVPFN-RAQGDHPIF-------GNRFRAIN 89
V +L ++ A+ +
Sbjct: 204 PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA 263
Query: 90 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
+L IR V + +N G A+ + V
Sbjct: 264 VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 99.2 bits (247), Expect = 3e-24
Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 12/151 (7%)
Query: 699 LTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC 758
++G + GS N + +++ + P F + +
Sbjct: 4 MSGRKASGSSPTSPINANKVENED------------AFLEEVAEEKPHVKPYFTKTILDM 51
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
+ +F +V P+P+V WF+DD V ES + +I + G C L I + D A
Sbjct: 52 EVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111
Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPK 849
++ C A N G++ + L + + +
Sbjct: 112 KYTCKAVNSLGEATCTAELLVETMGKEGEGE 142
Score = 96.8 bits (241), Expect = 2e-23
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 370
+ + S +N+ A E E + P F + + D+ V G+ AR
Sbjct: 3 GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFD 62
Query: 371 VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN-FYFIDLSSVSLFDSGRWTCLAENAVG 429
++ + ++ W+++D ++E++ ++ +D + +S V D ++TC A N++G
Sbjct: 63 CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 430 RSHCSCELSVLVP 442
+ C+ EL V
Sbjct: 123 EATCTAELLVETM 135
Score = 96.1 bits (239), Expect = 4e-23
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVP-KHYKKPKFLEELKAV-LSEGGAVNLECKVI 871
N FL+ K + KP F + + + + EG A +CKV
Sbjct: 7 RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE 66
Query: 872 GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSS 921
G P P + WFKD +K +I E+G C L YTC+A N +G +
Sbjct: 67 GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Query: 922 SAAL 925
+A L
Sbjct: 127 TAEL 130
Score = 89.1 bits (221), Expect = 8e-21
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGF 677
G +++ V+ A V K + KP F +++ + +G F+CKV G+
Sbjct: 9 ASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGY 68
Query: 678 PTPTLQWFKDNEELKPGDVYQLT----GTSSL----------GSYCCVAKNVMGKAESST 723
P P + WFKD+ +K +Q+ G SL Y C A N +G+A +
Sbjct: 69 PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
Query: 724 QLTIE 728
+L +E
Sbjct: 129 ELLVE 133
Score = 88.8 bits (220), Expect = 1e-20
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVP-KAYKAPFFTKELEAILTEQG-TVSLECKVMGI 473
SG NA + L + K + P+FTK + + +G +CKV G
Sbjct: 9 ASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGY 68
Query: 474 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 523
P P+++W+KD+ +K F + + + SL YTC+AVN +G A T+
Sbjct: 69 PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
Query: 524 RVI 526
++
Sbjct: 129 ELL 131
Score = 76.8 bits (189), Expect = 2e-16
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 17/149 (11%)
Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
G+ +N + + ++ P P F K + +++ G
Sbjct: 11 GSSPTSPINANKVENEDAFLEEVAEE--------------KPHVKPYFTKTILDMEVVEG 56
Query: 566 TSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKC 625
++A +C+V P P + W+ + V+ S + I D G S+ I+ + DD ++ C
Sbjct: 57 SAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 626 VATSSSGVKQFSAA-YVHVLMPKNYRKPR 653
A +S G +A V M K
Sbjct: 116 KAVNSLGEATCTAELLVET-MGKEGEGEG 143
Score = 74.9 bits (184), Expect = 8e-16
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 97 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 156
+ + S +N+ A E E + P F + + D+ V G+ AR
Sbjct: 3 GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFD 62
Query: 157 VEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD--GRTELNIRRVRRDD 212
++ P E+ D D+P+ +R I+ D G L I V DD
Sbjct: 63 CKVEGYPDPEVMWFKD-------------DNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Query: 213 GGRYSVTASNESGYSTAKFELSVES 237
+Y+ A N G +T EL VE+
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVET 134
Score = 74.9 bits (184), Expect = 8e-16
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 263
+ + S +N+ A E E + P F + + D+ V G+ AR
Sbjct: 3 GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFD 62
Query: 264 VEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD--GRTELNIRRVRRDD 319
++ P E+ D D+P+ +R I+ D G L I V DD
Sbjct: 63 CKVEGYPDPEVMWFKD-------------DNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Query: 320 GGRYSVTASNESGYSTAKFELSVES 344
+Y+ A N G +T EL VE+
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVET 134
Score = 57.2 bits (138), Expect = 1e-09
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P+++W+KD+ +K F + + + SL YTC+AVN +G A
Sbjct: 67 GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Query: 52 TSRVI 56
T+ ++
Sbjct: 127 TAELL 131
Score = 47.9 bits (114), Expect = 2e-06
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 29/124 (23%)
Query: 36 GTYTCEAVNCMGAAFSTSRVIARGQQSF---------------LDNDDVPFN-RAQG--- 76
G+ +N + + ++ ++ F+ + +G
Sbjct: 11 GSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPD 70
Query: 77 --------DHPIFGNRFRAINRD--GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 126
D+P+ +R I+ D G L I V DD +Y+ A N G +T EL
Sbjct: 71 PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
Query: 127 SVES 130
VE+
Sbjct: 131 LVET 134
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 100 bits (250), Expect = 5e-24
Identities = 36/192 (18%), Positives = 52/192 (27%), Gaps = 28/192 (14%)
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE-------TLGVCHLKIHA 811
+ N K + S P+V W D T + +
Sbjct: 15 RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKV 870
+ D + C+ + + G S +KL V P + G L C
Sbjct: 75 VTREDTGTYTCMVSEEGGNSYGEVKVKLIV---LVPPSKPTVNIPSSATIGNRAVLTCSE 131
Query: 871 I-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------------GIYTCEAH 913
G P WFKDG + G Y+CEA
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Query: 914 NCMGTTSSSAAL 925
N GT +S A+
Sbjct: 192 NGYGTPMTSNAV 203
Score = 99.6 bits (248), Expect = 8e-24
Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 16/208 (7%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
+ ++ + +L + ++ +FD +T + +R
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
+ T + + V R+D G Y+ S E G S + ++ + VP P+
Sbjct: 64 TFLP----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--PSKPTVNIPS 117
Query: 360 AVKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID-------LSS 411
+ +G RA L E + W+++ + N + Y ++
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177
Query: 412 VSLFDSGRWTCLAENAVGRSHCSCELSV 439
+S D+G ++C A N G S + +
Sbjct: 178 LSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 96.6 bits (240), Expect = 1e-22
Identities = 35/212 (16%), Positives = 52/212 (24%), Gaps = 36/212 (16%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG---- 604
+ V+ L C PR + W +G Y+
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYED 61
Query: 605 ---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESLKA 660
I + D G + C+ + G + VL+P P
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP-----PSKPTVNIP 116
Query: 661 VMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLT----------GTSSL--- 705
G C G P WFKD + T L
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFD 176
Query: 706 -------GSYCCVAKNVMGKAESSTQLTIEDI 730
G Y C A+N G +S + +E +
Sbjct: 177 PLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208
Score = 93.9 bits (233), Expect = 7e-22
Identities = 34/202 (16%), Positives = 57/202 (28%), Gaps = 44/202 (21%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------------------G 706
V C GF +P ++W D + Y T+S G
Sbjct: 22 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
+Y C+ G + ++ L P AT+
Sbjct: 82 TYTCMVSEEGGNSYGEVKVK----------------LIVLVPPSKPTVNIPSSATIGNRA 125
Query: 767 KFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKE------TLGVCHLKIHALEVADQAE 819
T SP + +WF+D + + L L +D E
Sbjct: 126 VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 185
Query: 820 WKCIATNDFGQSITSCFLKLNV 841
+ C A N +G +TS +++
Sbjct: 186 YSCEARNGYGTPMTSNAVRMEA 207
Score = 90.8 bits (225), Expect = 8e-21
Identities = 41/208 (19%), Positives = 62/208 (29%), Gaps = 46/208 (22%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK-------DPSSL---------- 505
V L C G +P++ W D + P+ +
Sbjct: 21 PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT 80
Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
GTYTC G ++ +V VP P A IG
Sbjct: 81 GTYTCMVSEEGGNSYGEVKVKLIVL--------VP----------PSKPTVNIPSSATIG 122
Query: 566 TSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE-------INYLEA 617
A+L C P W+ K+G+V ++ A Y + + L A
Sbjct: 123 NRAVLTCSEQDGSPPS-EYTWF-KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 618 VDDGEWKCVATSSSGVKQFSAA-YVHVL 644
D GE+ C A + G S A + +
Sbjct: 181 SDTGEYSCEARNGYGTPMTSNAVRMEAV 208
Score = 90.4 bits (224), Expect = 1e-20
Identities = 35/206 (16%), Positives = 61/206 (29%), Gaps = 33/206 (16%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF-- 406
+ ++ + +L + ++ W + Y + ++
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 407 ------IDLSSVSLFDSGRWTCLAENAVGRSHCSC--ELSVLVPKAYKAPFFTKELEAIL 458
I SV+ D+G +TC+ G S+ +L VLVP P
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP-----PSKPTVNIPSS 118
Query: 459 TEQG-TVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKD--------------- 501
G L C G P + W+KD + +
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178
Query: 502 -PSSLGTYTCEAVNCMGAAFSTSRVI 526
S G Y+CEA N G +++ V
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 80.8 bits (199), Expect = 2e-17
Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 12/213 (5%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
+ ++ + +L + ++ +FD +T + +R
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
+ T + + V R+D G Y+ S E G S + ++ + VP P+
Sbjct: 64 TFLP----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--PSKPTVNIPS 117
Query: 253 AVKVGTRARLL-VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
+ +G RA L E + + + I + + + G EL
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTW-FKDGIVMPTNPKSTRAFSNSSYVLNPTTG--ELV 174
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+ D G YS A N G + +E+
Sbjct: 175 FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 77.7 bits (191), Expect = 3e-16
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 8/176 (4%)
Query: 63 FLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 122
D D + R + + V R+D G Y+ S E G S
Sbjct: 39 KFDQGDTTRLVCYNNKITASYEDRVTFLPT--GITFKSVTREDTGTYTCMVSEEGGNSYG 96
Query: 123 KFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL-VEIRSPTEIKCQFDLNNTIPFSFRA 181
+ ++ + VP P+ + +G RA L E + + + I
Sbjct: 97 EVKVKLIVLVP--PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW-FKDGIVMPTNP 153
Query: 182 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+ + + G EL + D G YS A N G + +E+
Sbjct: 154 KSTRAFSNSSYVLNPTTG--ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 61.1 bits (148), Expect = 2e-10
Identities = 27/179 (15%), Positives = 44/179 (24%), Gaps = 51/179 (28%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK-------DPSSL----------GTYTCEAVN 44
G +P++ W D + P+ + GTYTC
Sbjct: 30 GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE 89
Query: 45 CMGAAFSTSRV------------------IARGQQSFLD---------------NDDVPF 71
G ++ +V G ++ L D +
Sbjct: 90 EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM 149
Query: 72 NRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
F N +N L + D G YS A N G + +E+
Sbjct: 150 PTNPKSTRAFSNSSYVLNPTTGE-LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 96.2 bits (240), Expect = 7e-24
Identities = 24/92 (26%), Positives = 41/92 (44%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
+APK E ++S + F V+V P+P+ W+++ ++ SD + VC
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
L I + D A A N G++ + FL
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 95.8 bits (239), Expect = 7e-24
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
+ PK E +++ + +G + +V+G P P +W+K+G +++ D ED C
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 905 L----------GIYTCEAHNCMGTTSSSAALL 926
L +A N G TSS A LL
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 83.5 bits (207), Expect = 2e-19
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL- 705
P+ E +++ G F +VVG P P +W+K+ +++ D L
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 65
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
S A N+ G+ S L ++
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
Score = 82.7 bits (205), Expect = 3e-19
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
+ +AP + +++ QG +V+G P P+ WYK+ KI+ D +
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 503 SSL----------GTYTCEAVNCMGAAFSTSRVIARGQ 530
L + +A+N G S + ++ + +
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 81.2 bits (201), Expect = 1e-18
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFI 407
AP R+ V G+ A V + + + WY+N K+E + +IY + N +
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ V+ DS A N G + L V
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 70.8 bits (174), Expect = 5e-15
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADG 604
P AP + +++ G+ A +V+ P P WY K GV +E SD+ +
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPE-CEWY-KNGVKIERSDRIYWYWPE 58
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+ I + D A + +G + S A++ V
Sbjct: 59 DNVCELVIRDVTGEDSASIMVKAINIAG-ETSSHAFLLV 96
Score = 58.8 bits (143), Expect = 8e-11
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGN-R 191
AP R+ V G+ A V + P E + + I + R
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-------------GVKIERSDR 51
Query: 192 FRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
D EL IR V +D V A N +G +++ L V+++
Sbjct: 52 IYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 58.8 bits (143), Expect = 8e-11
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGN-R 298
AP R+ V G+ A V + P E + + I + R
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-------------GVKIERSDR 51
Query: 299 FRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
D EL IR V +D V A N +G +++ L V+++
Sbjct: 52 IYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 57.3 bits (139), Expect = 3e-10
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P+ WYK+ KI+ D + L + +A+N G S
Sbjct: 31 GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS 90
Query: 52 TSRVIARGQ 60
+ ++ + +
Sbjct: 91 HAFLLVQAK 99
Score = 47.7 bits (114), Expect = 8e-07
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 77 DHPIFGN-RFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
I + R D EL IR V +D V A N +G +++ L V+++
Sbjct: 43 GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 100 bits (249), Expect = 7e-24
Identities = 39/203 (19%), Positives = 58/203 (28%), Gaps = 29/203 (14%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL-------KET 801
Q NE K T S P+V W + T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSE 860
+ ++ D E+ C+ + + GQ+ + L V P ++
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV---LVPPSKPTISVPSSVTI 118
Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-------------- 905
G L C G P WFKDG + D K + + + +
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 906 ---GIYTCEAHNCMGTTSSSAAL 925
G Y C+A N GT S A
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAA 201
Score = 98.9 bits (246), Expect = 2e-23
Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 17/211 (8%)
Query: 243 PAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
+ D+ V +L S ++ +F +T + +R
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 360
+ + + V R D G Y+ S E G + + + + VP P+ +
Sbjct: 62 FSS----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP--PSKPTISVPSS 115
Query: 361 VKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID--------LSS 411
V +G RA L E + W+++ + +T+ N F
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 412 VSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
V+ FDSG + C A+N G + S +
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
Score = 95.0 bits (236), Expect = 3e-22
Identities = 34/222 (15%), Positives = 58/222 (26%), Gaps = 46/222 (20%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEE-----------LKPGDVYQ 698
K + V + + C GF +P ++W P
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 699 LTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKA 748
+S + G Y C+ G+ + LT
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH----------------LTVLVP 104
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCH- 806
P T+ T SP + SWF+D ++ +D K
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 164
Query: 807 ------LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
L + D E+ C A N +G ++ S ++
Sbjct: 165 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
Score = 83.9 bits (207), Expect = 2e-18
Identities = 40/229 (17%), Positives = 69/229 (30%), Gaps = 49/229 (21%)
Query: 446 KAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK----- 500
K +T + + + E ++ L C G +P++ W A +
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 501 --DPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG 548
S + G YTC G + + VP
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL--------VP-------- 104
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVL--VPPWPRSIYWYNKEGV-VEASDKYHIMADGL 605
P IG A+L C PP W+ K+G+ + +D A
Sbjct: 105 --PSKPTISVPSSVTIGNRAVLTCSEHDGSPP-S-EYSWF-KDGISMLTADAKKTRAFMN 159
Query: 606 GGYSIE-------INYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMP 646
++I+ + + A D GE+ C A + G S A++ +
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 208
Score = 83.5 bits (206), Expect = 3e-18
Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 11/216 (5%)
Query: 136 PAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
+ D+ V +L S ++ +F +T + +R
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 253
+ + + V R D G Y+ S E G + + + + VP P+ +
Sbjct: 62 FSS----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP--PSKPTISVPSS 115
Query: 254 VKVGTRARLL-VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
V +G RA L E + + + + A+ + F + G +L
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG--DLIF 173
Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
V D G Y A N G + +++ +
Sbjct: 174 DPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209
Score = 79.2 bits (195), Expect = 1e-16
Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 7/179 (3%)
Query: 64 LDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 123
R + V R D G Y+ S E G + +
Sbjct: 37 FVQGSTTALVCYNSQITAPYADRVTFSSS--GITFSSVTRKDNGEYTCMVSEEGGQNYGE 94
Query: 124 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLL-VEIRSPTEIKCQFDLNNTIPFSFRAQ 182
+ + VP P+ +V +G RA L E + + + + A+
Sbjct: 95 VSIHLTVLVP--PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152
Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
+ F + G +L V D G Y A N G + +++ +
Sbjct: 153 KTRAFMNSSFTIDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209
Score = 56.9 bits (137), Expect = 4e-09
Identities = 24/185 (12%), Positives = 44/185 (23%), Gaps = 54/185 (29%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK-------DPSSL----------GTYTCEAVN 44
G +P++ W A + S + G YTC
Sbjct: 27 GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE 86
Query: 45 CMGAAFSTSRV------------------IARGQQSFL-----------------DNDDV 69
G + + + G ++ L D +
Sbjct: 87 EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM 146
Query: 70 PFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
A+ + F + G +L V D G Y A N G + ++
Sbjct: 147 LTADAKKTRAFMNSSFTIDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Query: 130 SQVPD 134
+ +
Sbjct: 205 AVELN 209
Score = 52.7 bits (126), Expect = 1e-07
Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 18/97 (18%)
Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKII 896
K V + E ++ L C G P ++W A +
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 897 SGEDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
+ G YTC G ++
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 102 bits (256), Expect = 7e-24
Identities = 48/334 (14%), Positives = 95/334 (28%), Gaps = 65/334 (19%)
Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWP---RSIYWYNKEGVV----------- 592
++ +++ IGT +L C P + W
Sbjct: 11 GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70
Query: 593 ------EASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM- 645
++ + +I ++ LE D+G + C + + S + V+
Sbjct: 71 GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK 130
Query: 646 PKNYRKPRFVESLKAVMTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQ-----L 699
P N+ + DD ++ C G P + W + + +
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV 190
Query: 700 TGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
T S S C+ M + + S L ++ P
Sbjct: 191 TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY------------------EP 232
Query: 750 KF-IEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHL 807
+ IEG + K T + +P + W + + V+ TL
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL--PKGVEAQNRTL----F 286
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ + + C ATN G S +++N+
Sbjct: 287 FKGPINYSLAGTYICEATNPIGT--RSGQVEVNI 318
Score = 101 bits (252), Expect = 3e-23
Identities = 39/335 (11%), Positives = 85/335 (25%), Gaps = 35/335 (10%)
Query: 126 LSVESQVPDAPA-FIRRLHDIAVKVGTRARLLVEIRSPTE---------IKCQFDLNNTI 175
++ Q+ P+ ++ + +GT L +P K +
Sbjct: 4 MTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV 63
Query: 176 PFSFRAQGDH--PIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 232
+ G + R + + + R+ +D G Y + + T E
Sbjct: 64 AIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT---FPTGNRE 120
Query: 233 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGD 291
+ V P ++ + C S+ +
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKK-----GQDDKVLVATCTSANGKPPSVVSWETRLK 175
Query: 292 HPIFGNRFRAINRDGRT--ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
R N + R + + L+V Q
Sbjct: 176 GEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV--QYE-- 231
Query: 350 PAF-IRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
P I +L + + P + HW + L + + + +F
Sbjct: 232 PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ---NRTLFFK 288
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
++ +G + C A N +G E+++
Sbjct: 289 --GPINYSLAGTYICEATNPIGTRSGQVEVNITEA 321
Score = 94.4 bits (234), Expect = 6e-21
Identities = 47/315 (14%), Positives = 83/315 (26%), Gaps = 36/315 (11%)
Query: 233 LSVESQVPDAPA-FIRRLHDIAVKVGTRARLLVEIRSPTE---------IKCQFDLNNTI 282
++ Q+ P+ ++ + +GT L +P K +
Sbjct: 4 MTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV 63
Query: 283 PFSFRAQGDH--PIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 339
+ G + R + + + R+ +D G Y + + T E
Sbjct: 64 AIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT---FPTGNRE 120
Query: 340 LSVESQVPDAPAFIRRLHDIAVKVGTRARL-LVEIR-----SPTEIKIHWYRNDRKLEEN 393
+ V P ++ ++ + W + E
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY 180
Query: 394 KIYRTQHDGNFYF--IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT 451
+ R + L C+ + R S L+V P T
Sbjct: 181 QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE-----PEVT 235
Query: 452 KELE--AILTEQGTVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFA----LTANPKDPSS 504
E ++ V L CK P W N + G P + S
Sbjct: 236 IEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSL 295
Query: 505 LGTYTCEAVNCMGAA 519
GTY CEA N +G
Sbjct: 296 AGTYICEATNPIGTR 310
Score = 88.3 bits (218), Expect = 6e-19
Identities = 59/328 (17%), Positives = 88/328 (26%), Gaps = 72/328 (21%)
Query: 648 NYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTP----TLQWFKDNEELKP--------- 693
+ V+ ++ G V C + W K K
Sbjct: 11 GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70
Query: 694 --------GDVYQLTGTS----SL----------GSYCC-VAKNVMGKAESSTQLTI-ED 729
+ + S ++ G Y C A G ES LT+
Sbjct: 71 GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK 130
Query: 730 IRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV 789
N + +L + K + +C + P VSW +
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLV--ATCTSANG-----------KPPSVVSWETRLKGE 177
Query: 790 VESDNVKILKETLGVC-HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKP 848
E ++ T+ V ++ A Q CI + S L LNV Y+ P
Sbjct: 178 AEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES--LTLNV--QYE-P 232
Query: 849 KFLEELK--AVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGD--------IHKIIS 897
+ E + V L CK P T W L G I+
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN 292
Query: 898 GEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
G Y CEA N +GT S +
Sbjct: 293 YSLA----GTYICEATNPIGTRSGQVEV 316
Score = 80.9 bits (199), Expect = 2e-16
Identities = 45/332 (13%), Positives = 75/332 (22%), Gaps = 68/332 (20%)
Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTP----QLIWYKDNKKIKAGDI------ 492
+ +++ G V L C Q+ W K K
Sbjct: 11 GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70
Query: 493 -----------FALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQ 531
++ G Y CE F+T R Q
Sbjct: 71 GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICE--------FATFPTGNRESQ 122
Query: 532 SFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEG 590
L P N + + K + + C P + W +G
Sbjct: 123 LNLTVMAKPTNWIEGTQA------VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKG 176
Query: 591 VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYR 650
E + + + C+ + + ++V
Sbjct: 177 EAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK-ESLTLNVQYE---- 231
Query: 651 KPRF-VESLKAVMTDDG-LVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLTGTSSL-- 705
P +E V CK P T W N L G + +
Sbjct: 232 -PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFK 288
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
G+Y C A N +G ++ I +
Sbjct: 289 GPINYSLAGTYICEATNPIGTRSGQVEVNITE 320
Score = 79.0 bits (194), Expect = 9e-16
Identities = 34/287 (11%), Positives = 66/287 (22%), Gaps = 37/287 (12%)
Query: 78 HPIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
+ R + + + R+ +D G Y + + T E + V P
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT---FPTGNRESQLNLTVMAKP 131
Query: 137 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAI 195
++ + C S+ + R
Sbjct: 132 TNWIEGTQAVLRAKK-----GQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186
Query: 196 NRDGRT--ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF-IRRLHDI 252
N + R + + L+V Q P I
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV--QYE--PEVTIEGFDGN 242
Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIFGNRFRAINRDGRTELN 311
+L C+ D N + + + + RT
Sbjct: 243 WYLQRMDVKL----------TCKADANPP-ATEYHWTTLNGSLPKG----VEAQNRTLFF 287
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
+ G Y A+N G + + E+++ +A A H
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVNIT----EAAALEHHHHH 330
Score = 47.8 bits (113), Expect = 1e-05
Identities = 24/173 (13%), Positives = 43/173 (24%), Gaps = 34/173 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFA-----------LTANPKDPSSLGTYTCEAVNCMGAAF 50
G P + W K P + + C M
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 51 STSR----------VIARGQQSFLDNDDVPFN-RAQGDHPIF--------GNRFRAINRD 91
+ + +L DV +A + P G+ + +
Sbjct: 222 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ 281
Query: 92 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 144
RT + G Y A+N G + + E+++ +A A H
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT----EAAALEHHHHH 330
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 95.1 bits (237), Expect = 2e-23
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
T + AP+ ++S + + +F + V P +V W+ + ++ ES + +
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS- 61
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
GV L+I D ++ + TN G++ L
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 90.4 bits (225), Expect = 7e-22
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 12/91 (13%)
Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
P+ ++ + G V P +KW+ +G EL+ + G
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN-TSGVLT 65
Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
L G Y N G S A L
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Score = 89.7 bits (223), Expect = 1e-21
Identities = 19/95 (20%), Positives = 37/95 (38%)
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
+ AP R+ V G R ++ ++S ++ WY N +L+E+ +
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+++ DSG + + N G + L V
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 87.0 bits (216), Expect = 1e-20
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 650 RKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
PR +++ G F V PT ++W+ + EL+ T G +L
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIED 729
G+Y V N G+A L +
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 77.3 bits (191), Expect = 3e-17
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
AP T + + G V PT ++ WY + +++ T N +
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT-NTSGVLT 65
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARG 529
L GTY N G A + + G
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 67.7 bits (166), Expect = 7e-14
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 16/109 (14%)
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
+ AP R+ V G R ++ ++ PT E+K + +
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHN-------------GVELQ 50
Query: 189 GN-RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
+ + N G L I DD G Y +N G ++ L V
Sbjct: 51 ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 67.7 bits (166), Expect = 7e-14
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 16/109 (14%)
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 295
+ AP R+ V G R ++ ++ PT E+K + +
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHN-------------GVELQ 50
Query: 296 GN-RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
+ + N G L I DD G Y +N G ++ L V
Sbjct: 51 ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 65.0 bits (159), Expect = 5e-13
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
AP + + + G + V P + WY GV ++ S K H G
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAE-VKWY-HNGVELQESSKIHYTNTS-GVL 64
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
++EI D G ++ V T+ G + A + V
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKG-EASDYATLDV 98
Score = 54.2 bits (131), Expect = 4e-09
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
PT ++ WY + +++ T N +L GTY N G A
Sbjct: 34 SKPTAEVKWYHNGVELQESSKIHYT-NTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASD 92
Query: 52 TSRVIARG 59
+ + G
Sbjct: 93 YATLDVTG 100
Score = 51.9 bits (125), Expect = 2e-08
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 77 DHPIFGN-RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
+ + + N G L I DD G Y +N G ++ L V
Sbjct: 46 GVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 95.1 bits (237), Expect = 2e-23
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
+P FL+ + + EG ++CKV G+P P L W DG+ ++ HK++ E+G L
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
GIYTC A N G S S L
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
Score = 90.1 bits (224), Expect = 1e-21
Identities = 26/99 (26%), Positives = 40/99 (40%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
++ P F++ + + +VS P P +SW D + V K+L G
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
V L I + D + CIATN GQ+ S L +
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 82.8 bits (205), Expect = 4e-19
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL 705
+P F+++ + +G L +CKV G PTP L W D + ++P +++ G SL
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIED 729
G Y C+A N G+ S +L +
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
Score = 77.8 bits (192), Expect = 2e-17
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
+ P F + + ++G ++CKV G+PTP L W D K ++ +
Sbjct: 4 GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 501 DPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
SL G YTC A N G + ++
Sbjct: 64 GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 76.6 bits (189), Expect = 5e-17
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYR-TQHDGNF 404
P F++ D+ V+ G R+ ++ +P + W + + + + ++ +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD---LSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ + + V+ D+G +TC+A N G++ S EL V
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 72.0 bits (177), Expect = 2e-15
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
G P F++ ++ + G ++C+V P P + W V + ++ G
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
+S+ I + + D G + C+AT+ +G FS + V
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFS-LELVVAAK 103
Score = 61.6 bits (150), Expect = 1e-11
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
P F++ D+ V+ G R+ ++ PT ++ Q D P+ +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLD-------------GKPVRPDSA 55
Query: 193 RAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
+ +G L I V D G Y+ A+N +G ++ EL V ++ P+
Sbjct: 56 HKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK-ESGPS 108
Score = 61.6 bits (150), Expect = 1e-11
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
P F++ D+ V+ G R+ ++ PT ++ Q D P+ +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLD-------------GKPVRPDSA 55
Query: 300 RAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
+ +G L I V D G Y+ A+N +G ++ EL V ++ P+
Sbjct: 56 HKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK-ESGPS 108
Score = 55.1 bits (133), Expect = 2e-09
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G+PTP L W D K ++ + SL G YTC A N G
Sbjct: 35 GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSF 94
Query: 52 TSRVI 56
+ ++
Sbjct: 95 SLELV 99
Score = 47.7 bits (114), Expect = 8e-07
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 77 DHPIFGNRFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
P+ + + +G L I V D G Y+ A+N +G ++ EL V ++
Sbjct: 47 GKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK-ES 105
Query: 135 APA 137
P+
Sbjct: 106 GPS 108
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 94.7 bits (236), Expect = 2e-23
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
P+F++ + + + EG ++ KV G+P P + W+ +GR +++ D+HK+I E G L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
G Y C A N G + + L
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQL 94
Score = 89.7 bits (223), Expect = 1e-21
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
P+FI+ ++ + +VS P P VSW+ + + V D K++ G+ L
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ +D + C+A N G++ + +L+V
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTV--QLDV 96
Score = 83.9 bits (208), Expect = 1e-19
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL- 705
PRF++ + + D+G + KV G P P + W+ + ++ D++++ G SL
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
G+Y CVAKN G+A + QL +
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 80.8 bits (200), Expect = 2e-18
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
A P F + E + ++G ++ KV G+P P + WY + + +++ D+ + + K
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 503 SSL----------GTYTCEAVNCMGAAFSTSR--VIAR 528
SL G Y C A N G A T + V+A+
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 78.9 bits (195), Expect = 7e-18
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYF 406
P FI+ ++++ G R+ ++ P + WY N R ++ + +++ + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLP-APDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
+ V D+G + C+A+N G + + +L VL
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 72.4 bits (178), Expect = 1e-15
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
P FI+ EN+ G ++ +V P P + WY V++ D + ++ G +S
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
+ + A D G + CVA + +G F+
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTV 92
Score = 62.3 bits (152), Expect = 5e-12
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
P FI+ ++++ G R+ ++ P ++ + + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN-------------GRTVQSDDL 51
Query: 193 RAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
+ + G L VR D G Y+ A N +G +T +L V ++
Sbjct: 52 HKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 62.3 bits (152), Expect = 5e-12
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
P FI+ ++++ G R+ ++ P ++ + + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN-------------GRTVQSDDL 51
Query: 300 RAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+ + G L VR D G Y+ A N +G +T +L V ++
Sbjct: 52 HKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 57.3 bits (139), Expect = 3e-10
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G+P P + WY + + +++ D+ + + K SL G Y C A N G A
Sbjct: 31 GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATF 90
Query: 52 TSR--VIAR 58
T + V+A+
Sbjct: 91 TVQLDVLAK 99
Score = 49.2 bits (118), Expect = 2e-07
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 77 DHPIFGNRFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
+ + + + G L VR D G Y+ A N +G +T +L V ++
Sbjct: 43 GRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 93.9 bits (234), Expect = 4e-23
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
P F L + EG V + +V G P+P + W ++ + ++ E G C
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
L G YTC+A N G A L
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Score = 93.1 bits (232), Expect = 7e-23
Identities = 24/94 (25%), Positives = 39/94 (41%)
Query: 745 NNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
+ P F L ++ +++V P+P VSW R+ Q V + G+
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
C L+I A E D + C A N++G L+
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 86.6 bits (215), Expect = 2e-20
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEEN-KIYRTQHD 401
S+ P P F L D +V+ G + + ++ P + + W RN + + + + + + +
Sbjct: 2 SKAP--PTFKVSLMDQSVREGQDVIMSIRVQGEP-KPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
G + + + D+G +TC A N G C L V
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 81.2 bits (201), Expect = 1e-18
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSS 704
P F SL +G V +V G P P + W ++ + ++P G
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIE 728
L G Y C A N G + +L +
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 80.0 bits (198), Expect = 3e-18
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
P F L +G V + +V G P P + W ++ + ++
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQ 530
L G YTC+AVN GA +R+ RG+
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 65.4 bits (160), Expect = 4e-13
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
P F + + + G I+ +V P P + W + V + G
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKP-VVSWL-RNRQPVRPDQRRFAEEAEGGLC 62
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
+ I E D G + C A + G +Q A
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEA 92
Score = 63.8 bits (156), Expect = 1e-12
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 19/113 (16%)
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 187
S+ P P F L D +V+ G + + ++ P + + P+
Sbjct: 2 SKAP--PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRN-------------RQPV 46
Query: 188 FGN--RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
+ RF G L I R D G Y+ A NE G + L V +
Sbjct: 47 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 63.8 bits (156), Expect = 1e-12
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 19/113 (16%)
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 294
S+ P P F L D +V+ G + + ++ P + + P+
Sbjct: 2 SKAP--PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRN-------------RQPV 46
Query: 295 FGN--RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+ RF G L I R D G Y+ A NE G + L V +
Sbjct: 47 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 56.9 bits (138), Expect = 3e-10
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P + W ++ + ++ L G YTC+AVN GA
Sbjct: 31 GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
Query: 52 TSRVIARGQ 60
+R+ RG+
Sbjct: 91 EARLEVRGE 99
Score = 50.4 bits (121), Expect = 7e-08
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 77 DHPIFGN--RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
P+ + RF G L I R D G Y+ A NE G + L V +
Sbjct: 43 RQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 98.8 bits (246), Expect = 6e-23
Identities = 32/238 (13%), Positives = 62/238 (26%), Gaps = 40/238 (16%)
Query: 304 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
+G I +D G Y + E+ + + +
Sbjct: 38 LNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV---- 93
Query: 358 DIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
G L + +YRN + + + N ++
Sbjct: 94 ---FTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWNSNLTI---LKTNISH 142
Query: 417 SGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP 476
+G + C + ++V + AP + + L E V+L C+ +
Sbjct: 143 NGTYHCSGMGKHRYTSAGISVTVKEL--FPAPVLNASVTSPLLEGNLVTLSCETKLLLQR 200
Query: 477 -----QLIWYKDNKKIKAGD------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
+Y +K ++ + I G Y CEA G S
Sbjct: 201 PGLQLYFSFYMGSKTLRGRNTSSEYQILTAR-----REDSGLYWCEAATEDGNVLKRS 253
Score = 96.1 bits (239), Expect = 4e-22
Identities = 46/278 (16%), Positives = 82/278 (29%), Gaps = 59/278 (21%)
Query: 668 VSFECKVVGFPTP-TLQWFKDNEELKP-GDVYQLTGTSS--LGSYCCVAKNVMGKAE--- 720
V+ C+V+ P + QWF + + Y++T S G Y C
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQL 78
Query: 721 --SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEP 778
L ++ +E + L L C A +
Sbjct: 79 EIHRGWLLLQVSSRVFTEGEPLAL--------------RCHAWKD-----------KLVY 113
Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
V ++R+ + L I ++ + C TS +
Sbjct: 114 NVLYYRNGKAFKFFHWNSNLT---------ILKTNISHNGTYHCSGMGKHRY--TSAGIS 162
Query: 839 LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP-----TLKWFKDGRELKA---G 890
+ V + + P + + L EG V L C+ + Q ++ + L+
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTS 222
Query: 891 DIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
++I ED G+Y CEA G + L
Sbjct: 223 SEYQILTARREDS----GLYWCEAATEDGNVLKRSPEL 256
Score = 91.5 bits (227), Expect = 2e-20
Identities = 39/277 (14%), Positives = 78/277 (28%), Gaps = 48/277 (17%)
Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
TV+L C+V+ +P W+ + + + + G Y C+
Sbjct: 18 TVTLHCEVLHLPGSSSTQWFLNGTATQTST-PSYRITSASVNDSGEYRCQRGL------- 69
Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
+S D + + +V + G L C
Sbjct: 70 -------SGRS----DPIQLEIHRGW-----LLLQVSSRVFTEGEPLALRCHAWKDKLVY 113
Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
++ +Y + G ++ I +G + C + V
Sbjct: 114 NVLYY-RNGKA-------FKFFHWNS-NLTILKTNISHNGTYHCSGMGKHRYTS-AGISV 163
Query: 642 HVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP---TPTLQW--FKDNEELKP--- 693
V + P S+ + + + LV+ C+ L + + ++ L+
Sbjct: 164 TVKEL--FPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT 221
Query: 694 GDVYQLT--GTSSLGSYCCVAKNVMGKAES-STQLTI 727
YQ+ G Y C A G S +L +
Sbjct: 222 SSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258
Score = 90.7 bits (225), Expect = 3e-20
Identities = 37/304 (12%), Positives = 85/304 (27%), Gaps = 58/304 (19%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGYS 609
+ + V + L C+VL P S W+ N ++ Y I S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRI-------TS 54
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVS 669
+N D GE++C S + + ++ V T+ ++
Sbjct: 55 ASVN-----DSGEYRCQRGLSGRSD---PIQLEIHRG-----WLLLQVSSRVFTEGEPLA 101
Query: 670 FECKVV-GFPTPTLQWFKDNEELKP---GDVYQLTGTSS--LGSYCCVAKNVMGKAESST 723
C + ++++ + K + T+ G+Y C +
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161
Query: 724 QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEP----- 778
+T++++ + + + + + +
Sbjct: 162 SVTVKEL----------------FPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQL 205
Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFL 837
S++ + + + +I D + C A + G + S L
Sbjct: 206 YFSFYMGSKTLRGRNTSS---------EYQILTARREDSGLYWCEAATEDGNVLKRSPEL 256
Query: 838 KLNV 841
+L V
Sbjct: 257 ELQV 260
Score = 89.2 bits (221), Expect = 1e-19
Identities = 38/277 (13%), Positives = 77/277 (27%), Gaps = 50/277 (18%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
P W+ N + + ++ ++S S+ DSG + C S S
Sbjct: 28 LPGSSSTQWFLNGTATQTS-------TPSYR---ITSASVNDSGEYRCQRGL----SGRS 73
Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKA---- 489
+ + + ++ + + TE ++L C +++Y++ K K
Sbjct: 74 DPIQLEI---HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN 130
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
++ L N GTY C + + V +
Sbjct: 131 SNLTILKTNISH---NGTYHCSGMGKHRYTSAGISVTVKEL------------------F 169
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
+ G L C+ + + Y +
Sbjct: 170 PAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY----MGSKTLRGRNTSS-E 224
Query: 610 IEINYLEAVDDGEWKCVATSSSG--VKQFSAAYVHVL 644
+I D G + C A + G +K+ + VL
Sbjct: 225 YQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
Score = 88.8 bits (220), Expect = 1e-19
Identities = 35/257 (13%), Positives = 69/257 (26%), Gaps = 46/257 (17%)
Query: 197 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
+G I +D G Y + E+ + + +
Sbjct: 38 LNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV---- 93
Query: 251 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
G P ++C + + + + L
Sbjct: 94 ---FTEG----------EPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-------WNSNL 133
Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL- 369
I + G Y + + Y++A ++V + + + G L
Sbjct: 134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTV--KELFPAPVLNASVTSPLLEGNLVTLS 191
Query: 370 ----LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425
L+ R ++ +Y + L R ++ + Y I + DSG + C A
Sbjct: 192 CETKLLLQRPGLQLYFSFYMGSKTL------RGRNTSSEYQI--LTARREDSGLYWCEAA 243
Query: 426 NAVGR-SHCSCELSVLV 441
G S EL + V
Sbjct: 244 TEDGNVLKRSPELELQV 260
Score = 80.3 bits (198), Expect = 1e-16
Identities = 38/259 (14%), Positives = 76/259 (29%), Gaps = 48/259 (18%)
Query: 2 GIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAA------FSTSR 54
+P W+ + + + + G Y C+ +
Sbjct: 27 HLPGSSSTQWFLNGTATQTST-PSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWL 85
Query: 55 VIARGQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRT--------ELNIRRVRRDD 105
++ + F + + + A D ++ + R+G+ L I +
Sbjct: 86 LLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY---RNGKAFKFFHWNSNLTILKTNISH 142
Query: 106 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 165
G Y + + Y++A ++V + + + G L
Sbjct: 143 NGTYHCSGMGKHRYTSAGISVTV--KELFPAPVLNASVTSPLLEGNLVTL---------- 190
Query: 166 KCQFDLNNTIP-----FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 220
C+ L P FSF + R+ +E I RR+D G Y A
Sbjct: 191 SCETKLLLQRPGLQLYFSF--------YMGSKTLRGRNTSSEYQILTARREDSGLYWCEA 242
Query: 221 SNESGYSTAKFELSVESQV 239
+ E G + S E ++
Sbjct: 243 ATEDGNVLKR---SPELEL 258
Score = 76.1 bits (187), Expect = 3e-15
Identities = 37/268 (13%), Positives = 69/268 (25%), Gaps = 58/268 (21%)
Query: 90 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
+G I +D G Y + E+ + + +
Sbjct: 38 LNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV---- 93
Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 203
G P ++C + + + + L
Sbjct: 94 ---FTEG----------EPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-------WNSNL 133
Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 263
I + G Y + + Y++A ++V + + + G L
Sbjct: 134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTV--KELFPAPVLNASVTSPLLEGNLVTL- 190
Query: 264 VEIRSPTEIKCQFDLNNTIP-----FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 318
C+ L P FSF + R+ +E I RR+
Sbjct: 191 ---------SCETKLLLQRPGLQLYFSF--------YMGSKTLRGRNTSSEYQILTARRE 233
Query: 319 DGGRYSVTASNESGYSTAKFELSVESQV 346
D G Y A+ E G + S E ++
Sbjct: 234 DSGLYWCEAATEDGNVLKR---SPELEL 258
Score = 46.4 bits (110), Expect = 2e-05
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Query: 855 KAVLS---------EGGAVNLECKVIGVPQP-TLKWFKDGRELKAGDIHKIISG---EDG 901
KAV++ + V L C+V+ +P + +WF +G + I+ D
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDS 60
Query: 902 TCCLGIYTCEAHN 914
G Y C+
Sbjct: 61 ----GEYRCQRGL 69
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 92.7 bits (231), Expect = 1e-22
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 845 YKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
KP + L+ +S K G P+PT W KDG+ + G +K+ + G
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-DKGGF 62
Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
L G+YTC N G+ SSS L
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 88.1 bits (219), Expect = 5e-21
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
+ P + GL+ + + KF V+ + P P W +D + + + K+ ++ G
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK-GGF 62
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
L+IH + +D + C N G +SC L
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 87.7 bits (218), Expect = 6e-21
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
+ P + L D V + A+ V+ P W ++ + + + Y+ D
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEP-RPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+F+++ DSG +TC +N+ G SC+L++
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 82.7 bits (205), Expect = 3e-19
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 649 YRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSS 704
KP V L+ + F K G P PT W KD + + G Y+L+ G
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIEDI 730
L G Y C KN G SS +LTI+ I
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 74.2 bits (183), Expect = 3e-16
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 445 YKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPS 503
P L+ K G P P IW KD K I G + L+ + K
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED-KGGF 62
Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVIARG 529
L G YTC N G+ S+ ++ +
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 69.2 bits (170), Expect = 2e-14
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 548 GP---APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMAD 603
GP P+ + +++ + A + P P W K+G + KY + D
Sbjct: 1 GPISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT-AIWT-KDGKAITQGGKYKLSED 58
Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
GG+ +EI+ + D G + C +S+G S
Sbjct: 59 K-GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92
Score = 67.3 bits (165), Expect = 8e-14
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 16/109 (14%)
Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF- 188
+ P + L D V + A+ V+ P D I
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKD-------------GKAITQ 49
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
G +++ G L I + D G Y+ T N +G ++ +L++++
Sbjct: 50 GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 67.3 bits (165), Expect = 8e-14
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 16/109 (14%)
Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF- 295
+ P + L D V + A+ V+ P D I
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKD-------------GKAITQ 49
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
G +++ G L I + D G Y+ T N +G ++ +L++++
Sbjct: 50 GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 51.5 bits (124), Expect = 3e-08
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 77 DHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
I G +++ G L I + D G Y+ T N +G ++ +L++++
Sbjct: 44 GKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 51.5 bits (124), Expect = 3e-08
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P IW KD K I G + L+ + K L G YTC N G+ S
Sbjct: 32 GEPRPTAIWTKDGKAITQGGKYKLSED-KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
Query: 52 TSRVIARG 59
+ ++ +
Sbjct: 91 SCKLTIKA 98
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 92.1 bits (229), Expect = 2e-22
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQ 399
+ P F+R + V G A L + P + W + ++L ++
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEP-PPVVVWEKGGQQLAASERLSFP 63
Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
DG + + L++ D+G + C A NA G ++ + ++VL P
Sbjct: 64 ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 90.1 bits (224), Expect = 1e-21
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 837 LKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI 895
+K + P FL + V + G L+C V+G P P + W K G++L A +
Sbjct: 3 MKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSF 62
Query: 896 ISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
+ + L G+Y C A N G ++AA+
Sbjct: 63 PA-DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
Score = 84.0 bits (208), Expect = 2e-19
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
P F+ + + E + V P P V W + QQ+ S+ + + L
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG-AEHGL 71
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
+ A D + C A N G++ + + + P
Sbjct: 72 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 82.0 bits (203), Expect = 6e-19
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
P F+ + V G +C V+G P P + W K ++L + L
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIED 729
G Y C A+N G+A ++ +T+ +
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 75.5 bits (186), Expect = 2e-16
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
P F + + G L+C V+G P P ++W K +++ A + + A+
Sbjct: 8 GDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA 67
Query: 501 D---------PSSLGTYTCEAVNCMGAAFSTSRVI 526
+ P+ G Y C A N G A++ + V
Sbjct: 68 EHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 71.6 bits (176), Expect = 3e-15
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL 605
G P F++ V+ G A L+C VL P P + W + AS++ ADG
Sbjct: 9 DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPV-VVWEKGGQQLAASERLSFPADG- 66
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
+ + + D G + C A +++G +AA V VL P
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARNAAGEAY-AAAAVTVLEP 106
Score = 62.8 bits (153), Expect = 3e-12
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 16/113 (14%)
Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 184
+ P F+R + V G A L + P + +
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKG-------------G 51
Query: 185 HPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
+ R L + D G Y A N +G + A ++V
Sbjct: 52 QQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 62.8 bits (153), Expect = 3e-12
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 16/113 (14%)
Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 291
+ P F+R + V G A L + P + +
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKG-------------G 51
Query: 292 HPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
+ R L + D G Y A N +G + A ++V
Sbjct: 52 QQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 52.0 bits (125), Expect = 2e-08
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKD---------PSSLGTYTCEAVNCMGAAFST 52
G P P ++W K +++ A + + A+ + P+ G Y C A N G A++
Sbjct: 39 GEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA 98
Query: 53 SRVI 56
+ V
Sbjct: 99 AAVT 102
Score = 47.4 bits (113), Expect = 1e-06
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
G + R L + D G Y A N +G + A ++V
Sbjct: 50 GGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 92.0 bits (229), Expect = 2e-22
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-GDIHKIISGEDGTC 903
P F +LK + EG V C+V G P+P + WFKDG+++ D + I DGTC
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
L G YT A N G S + L
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
Score = 90.1 bits (224), Expect = 1e-21
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-VKILKETL 802
++ AP F LK + FT +V+ +P+PK+ WF+D +Q+ + I ++
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
G C L A + D + +A N G+ + L +
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 82.0 bits (203), Expect = 7e-19
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 650 RKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKP-GDVYQLT----GTS 703
P F LK +G+ V+F C+V G P P + WFKD +++ P D Y + GT
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIEDI 730
SL G+Y +A N G+ + +L ++ +
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103
Score = 77.8 bits (192), Expect = 2e-17
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRT--QH 400
S AP F +L + G + +P + KI+W+++ +++ + T +
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNP-KPKIYWFKDGKQISPKSDHYTIQRD 61
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
+ ++ +L D G +T +A N GR C+ L V +
Sbjct: 62 LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 77.8 bits (192), Expect = 2e-17
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA-GDIFALTANPKDPS 503
APFF +L+ +G V+ C+V G P P++ W+KD K+I D + + +
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVI 526
SL G YT A N G T R++
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 67.4 bits (165), Expect = 9e-14
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADG 604
AP F ++++ K G C+V P P+ IYW+ + + + SD Y I D
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPK-IYWFKDGKQISPKSDHYTIQRDL 62
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
G S+ DDG + +A + G + V
Sbjct: 63 DGTCSLHTTASTLDDDGNYTIMAANPQGRIS-CTGRLMV 100
Score = 60.1 bits (146), Expect = 4e-11
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 19/120 (15%)
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 187
S AP F +L + G + +P +I D I
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKD-------------GKQI 49
Query: 188 FGN-RFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
I + DG L+ DD G Y++ A+N G + L V++ V P+
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA-VNSGPS 108
Score = 60.1 bits (146), Expect = 4e-11
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 19/120 (15%)
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 294
S AP F +L + G + +P +I D I
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKD-------------GKQI 49
Query: 295 FGN-RFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
I + DG L+ DD G Y++ A+N G + L V++ V P+
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA-VNSGPS 108
Score = 54.3 bits (131), Expect = 4e-09
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 2 GIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
G P P++ W+KD K+I D + + + SL G YT A N G
Sbjct: 34 GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93
Query: 51 STSRVI 56
T R++
Sbjct: 94 CTGRLM 99
Score = 48.1 bits (115), Expect = 7e-07
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 77 DHPIFGN-RFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
I I + DG L+ DD G Y++ A+N G + L V++ V
Sbjct: 46 GKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA-VN 104
Query: 134 DAPA 137
P+
Sbjct: 105 SGPS 108
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 96.9 bits (240), Expect = 1e-21
Identities = 42/277 (15%), Positives = 83/277 (29%), Gaps = 36/277 (12%)
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
L R +D G Y+ N + S F L V + + ++ R+
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
+ F + ++ G + I L+ + G
Sbjct: 141 TCP-----NVDGYFPSSVKPTITWY-MGCYKIQNFNNVIPEGM---NLSFLIALISNNGN 191
Query: 323 Y----SVTASNESGYSTAKFELSV-ESQVPDAPAFIRRLHD---IAVKVGTRARLLVEIR 374
Y + + + + T + V S P I +D + G + +
Sbjct: 192 YTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVY 251
Query: 375 SPTE----IKIHWYRNDRKLEENKIYRTQHDGNFYFID----------LSSVSLFDSGR- 419
++ W + +K ++ I T ++ + + V+ D R
Sbjct: 252 FSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRS 311
Query: 420 WTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA 456
+ C A +A G + ++ VP AP +T EL
Sbjct: 312 YVCHARSAKGEVAKAAKVKQKVP----APRYTVELAC 344
Score = 96.1 bits (238), Expect = 2e-21
Identities = 43/315 (13%), Positives = 88/315 (27%), Gaps = 70/315 (22%)
Query: 664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL------------------ 705
+ + F TL W+ ++ + +
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL---LLTNNKAPKFIEGLKSCQATV 762
G+Y C+ +N ++ + L + + + KL L +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
+ +P ++W+ ++ +NV L +++ + C
Sbjct: 152 S------------VKPTITWYMGCYKIQNFNNVIPEGMNL-----SFLIALISNNGNYTC 194
Query: 823 IATNDFG--QSITSCFLKLNV---PKHYKKPKFLEELKAVLSE---GGAVNLECKVI--- 871
+ T + L + V PK+ P V+ E G + + C V
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 872 -GVPQPTLKWFKDGRELKAGDIHKIIS---------GEDGTCCLGI-----------YTC 910
+ + W DG++ I I+ E T L I Y C
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314
Query: 911 EAHNCMGTTSSSAAL 925
A + G + +A +
Sbjct: 315 HARSAKGEVAKAAKV 329
Score = 95.7 bits (237), Expect = 3e-21
Identities = 35/350 (10%), Positives = 93/350 (26%), Gaps = 57/350 (16%)
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPR----------SIYWYNKEGVVEASDKYHIMAD 603
+ + ++ A ++C + ++ WY + + +
Sbjct: 11 LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70
Query: 604 G----LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA-YVHVLMPKNYRKPRFVESL 658
+ D G + C+ +++ + + V +
Sbjct: 71 ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130
Query: 659 KAVMTDDGLVS---FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------G 706
+ ++ + PT+ W+ +++ + G + G
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNG 190
Query: 707 SYCCVAK----NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK---SCQ 759
+Y CV + + + + + ++ + G + C
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKVVG-SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCT 249
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQV---------VESDNVKILKETLGVCHLKIH 810
+ + +V W D ++ ES + ++ L I
Sbjct: 250 VYFSF--------LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIK 301
Query: 811 ALEVADQA-EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS 859
+ D + C A + G+ + +K VP P++ EL
Sbjct: 302 KVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVP----APRYTVELACGFG 347
Score = 94.9 bits (235), Expect = 6e-21
Identities = 38/254 (14%), Positives = 72/254 (28%), Gaps = 41/254 (16%)
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
L R +D G Y+ N + S F L V + + ++ R+
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 370 L-----VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA 424
S + I WY K++ +G + ++G +TC+
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFN--NVIPEGMNLSF--LIALISNNGNYTCVV 196
Query: 425 ----ENAVGRSHCSCELSVLV-PKAYKAPFFTKELEAILTE---QGTVSLECKV----MG 472
+ + V+ PK P + ++ E + + C V +
Sbjct: 197 TYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLM 256
Query: 473 IPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSL-----------GTYTCEA 512
++ W D KK + T + L +Y C A
Sbjct: 257 DSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA 316
Query: 513 VNCMGAAFSTSRVI 526
+ G ++V
Sbjct: 317 RSAKGEVAKAAKVK 330
Score = 94.2 bits (233), Expect = 1e-20
Identities = 34/266 (12%), Positives = 73/266 (27%), Gaps = 22/266 (8%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
L R +D G Y+ N + S F L V + + ++ R+
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
+ F + ++ G + I L+ + G
Sbjct: 141 TCP-----NVDGYFPSSVKPTITWY-MGCYKIQNFNNVIPEGM---NLSFLIALISNNGN 191
Query: 216 Y----SVTASNESGYSTAKFELSV-ESQVPDAPAFIRRLHD---IAVKVGTRARLLVEIR 267
Y + + + + T + V S P I +D + G + +
Sbjct: 192 YTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVY 251
Query: 268 SPTEIKCQFDL----NNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD-GGR 322
+ + ++ + P + R + L+I++V +D
Sbjct: 252 FSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRS 311
Query: 323 YSVTASNESGYSTAKFELSVESQVPD 348
Y A + G ++ + P
Sbjct: 312 YVCHARSAKGEVAKAAKVKQKVPAPR 337
Score = 80.7 bits (198), Expect = 3e-16
Identities = 40/322 (12%), Positives = 75/322 (23%), Gaps = 74/322 (22%)
Query: 460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP----KDPSSL---------- 505
+ + LIWY + + K+ L
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
G YTC N + + + +K +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPL----------------EVVQKDSCFNSPMKLPVHKLYIEY 135
Query: 566 TSAILECQVL---VPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDG 621
+ C + P + +I WY + I G ++ ++G
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWY-MGCYKIQNFNNVI----PEGMNLSFLIALISNNG 190
Query: 622 EWKCVATSSSGVKQFSA---AYVHVLMPKNYRKPRFV----ESLKAVMTDDGLVSFECKV 674
+ CV T + F V V+ P + + + + C V
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250
Query: 675 V----GFPTPTLQWFKDN-------------EELKPGDVYQLTGTSSL-----------G 706
+ W D E + T T L
Sbjct: 251 YFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKR 310
Query: 707 SYCCVAKNVMGKAESSTQLTIE 728
SY C A++ G+ + ++ +
Sbjct: 311 SYVCHARSAKGEVAKAAKVKQK 332
Score = 69.1 bits (168), Expect = 2e-12
Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 37/194 (19%)
Query: 752 IEGLKSCQATVNEEF-----------KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE 800
++ ++ Q +E KF + S + W+ Q + +
Sbjct: 11 LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70
Query: 801 ----TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV---PKHYKKPKFLEE 853
+ L + D + C+ N S + L V + P L
Sbjct: 71 ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVA--FPLEVVQKDSCFNSPMKLPV 128
Query: 854 LKAVLSEGGAV----NLECKVIGVPQPTLKWFKDGRELKAGDIH---------KIISGED 900
K + G N++ +PT+ W+ +++ + I +
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISN 188
Query: 901 GTCCLGIYTCEAHN 914
G YTC
Sbjct: 189 N----GNYTCVVTY 198
Score = 68.7 bits (167), Expect = 2e-12
Identities = 35/297 (11%), Positives = 72/297 (24%), Gaps = 60/297 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANP----KDPSSL----------GTYTCEAVNCMG 47
LIWY + + K+ L G YTC N
Sbjct: 44 HSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTY 103
Query: 48 AAFSTSRV-IARGQQSFLDNDDVPFNRA-----------------------------QGD 77
+ + + + F +P ++ G
Sbjct: 104 CSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC 163
Query: 78 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRY----SVTASNESGYSTAKFELSV-ESQV 132
+ I L+ + G Y + + + + T + V S
Sbjct: 164 YKIQNFNNVIPEGM---NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK 220
Query: 133 PDAPAFIRRLHD---IAVKVGTRARLLVEIRSPTEIKCQFDL----NNTIPFSFRAQGDH 185
P I +D + G + + + + ++ + P
Sbjct: 221 NAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTI 280
Query: 186 PIFGNRFRAINRDGRTELNIRRVRRDD-GGRYSVTASNESGYSTAKFELSVESQVPD 241
+ R + L+I++V +D Y A + G ++ + P
Sbjct: 281 NESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPR 337
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 92.8 bits (230), Expect = 2e-21
Identities = 34/209 (16%), Positives = 65/209 (31%), Gaps = 45/209 (21%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPR---SIYWYNKEGVVEASDKYHIMADG---------- 604
+ ++ G +A L C+ + P + I W + D+ I+ G
Sbjct: 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67
Query: 605 -------------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK 651
G SI + L+ D G ++C + GV + VL+
Sbjct: 68 LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF-LLTVLVK----- 121
Query: 652 PRFVESLKAVMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELK-PGDVYQLTGTSSL--- 705
P + G +C+ G +W K ++ P + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVK 181
Query: 706 -------GSYCCVAKNVMGKAESSTQLTI 727
G+Y C +N +G + +L +
Sbjct: 182 NASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 90.5 bits (224), Expect = 1e-20
Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 292 HPIFGNRFRAINRD---GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
+P R + D G +N+ ++ D G Y G + KF L+V V
Sbjct: 65 YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV--LVK- 121
Query: 349 APAFIRRLHDIAVKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
P+ R D + ++G +L ++ W + + + +
Sbjct: 122 -PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ S SG ++C +N VG C L V+ P
Sbjct: 181 --KNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
Score = 76.6 bits (188), Expect = 8e-16
Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 43/204 (21%)
Query: 759 QATVNEEFKFTVQVSISPEPK----VSWFRDDQQVVESDNVKILKE-------------- 800
+ E + ++SPE + + W D V IL
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 801 ---------TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFL 851
G + + L+++D ++C G + L + V P
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-----PSGT 125
Query: 852 E-ELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL---- 905
+ G L+C+ G +W K + +
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW-LAEMTSPVISVKNAS 184
Query: 906 ----GIYTCEAHNCMGTTSSSAAL 925
G Y+C N +G+ L
Sbjct: 185 SEYSGTYSCTVQNRVGSDQCMLRL 208
Score = 76.3 bits (187), Expect = 1e-15
Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 42/206 (20%)
Query: 357 HDIAVKVGTRARL----LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF------ 406
I G A L + + I W + + + G+ +
Sbjct: 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67
Query: 407 ------------------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAP 448
I+++++ L D G + C + A G ++ L+VLV P
Sbjct: 68 LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-----P 122
Query: 449 FFTKELEAILTEQG-TVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFA-------LTANP 499
T+ E G L+C+ G Q W K + + ++
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKN 182
Query: 500 KDPSSLGTYTCEAVNCMGAAFSTSRV 525
GTY+C N +G+ R+
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQCMLRL 208
Score = 75.5 bits (185), Expect = 2e-15
Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 17/187 (9%)
Query: 50 FSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRY 109
S S Q L + D ++ D + + G +N+ ++ D G Y
Sbjct: 40 ISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTY 99
Query: 110 SVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQF 169
G + KF L+V V P+ R D + ++G +L KC+
Sbjct: 100 QCKVKKAPGVANKKFLLTV--LVK--PSGTRCFVDGSEEIGNDFKL----------KCEP 145
Query: 170 DLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST 228
+ F ++ D + A ++++ + G YS T N G
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNRVGSDQ 203
Query: 229 AKFELSV 235
L V
Sbjct: 204 CMLRLDV 210
Score = 50.8 bits (121), Expect = 4e-07
Identities = 30/223 (13%), Positives = 48/223 (21%), Gaps = 65/223 (29%)
Query: 463 TVSLECKVMGIPTPQ----LIWYKDNKKIKAGDI-----------------------FAL 495
T L CK P Q + W + D F
Sbjct: 17 TAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS 76
Query: 496 TANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLM 545
+S+ GTY C+ G A +
Sbjct: 77 NDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV---------------- 120
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVL--VPPWPRSIYWYNKEGVVEASDKYHIMAD 603
P + + +IG L+C+ P W +
Sbjct: 121 ----KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLP-L-QFEWQKLSDSQTMPTPWLAEMT 174
Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
I + + G + C + G Q + V+ P
Sbjct: 175 ---SPVISVKNASSEYSGTYSCTVQNRVGSDQCM-LRLDVVPP 213
Score = 37.7 bits (87), Expect = 0.011
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFA-------LTANPKDPSSLGTYTCEAVNCMGAAFSTSR 54
G Q W K + + ++ GTY+C N +G+ R
Sbjct: 148 GSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLR 207
Query: 55 V 55
+
Sbjct: 208 L 208
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 89.4 bits (222), Expect = 2e-21
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 843 KHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK-IISGED 900
+H + P F+ + + + EG +V LEC++ +P P L W ++ ++ +
Sbjct: 11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70
Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAAL 925
G L G YT A N G T+ + L
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Score = 85.9 bits (213), Expect = 5e-20
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-VKILKET 801
+ +AP FI +S + + K Q+S P PK+ W R+++ V + + + + ++
Sbjct: 10 HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKP 848
G L I + D + A N+ G + + L + + P
Sbjct: 70 TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 82.4 bits (204), Expect = 6e-19
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEEN--KIYR 397
+ AP FI + V G +L +I P K+ W RN+ ++ N +I
Sbjct: 7 HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIP-PPKLFWKRNNEMVQFNTDRISL 65
Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAP 448
Q + + + V+ D+G +T A N G + C+ L V P
Sbjct: 66 YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 81.7 bits (202), Expect = 1e-18
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 428 VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKK 486
+G H +AP F + ++ +G +V LEC++ IP P+L W ++N+
Sbjct: 1 MGHHHHHHSHEHK-----RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEM 55
Query: 487 IKA-GDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSF 533
++ D +L + +L G YT AVN G +R+ + +
Sbjct: 56 VQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113
Score = 77.4 bits (191), Expect = 4e-17
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTS 703
R P F+ ++ +G V EC++ P P L W ++NE ++ TG
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIE 728
+L G Y A N G +T+L +
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
Score = 68.6 bits (168), Expect = 4e-14
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGY 608
AP+FI + ++ K G S LECQ+ P P+ ++W N E V +D+ + D G
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPK-LFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
++ I + D G + A + +GV + V N P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTT-CNTRLDVTARPNQTLP 116
Score = 67.4 bits (165), Expect = 1e-13
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 184
+ AP FI + V G +L +I P ++ + + N + F+
Sbjct: 7 HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN-NEMVQFN------ 59
Query: 185 HPIFGNRFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
+R + GR L I+ V + D G Y+V+A NE+G +T L V ++
Sbjct: 60 ----TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 67.4 bits (165), Expect = 1e-13
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 291
+ AP FI + V G +L +I P ++ + + N + F+
Sbjct: 7 HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN-NEMVQFN------ 59
Query: 292 HPIFGNRFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+R + GR L I+ V + D G Y+V+A NE+G +T L V ++
Sbjct: 60 ----TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 52.8 bits (127), Expect = 2e-08
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 2 GIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
IP P+L W ++N+ ++ D +L + +L G YT AVN G
Sbjct: 41 AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTT 100
Query: 51 STSRVIARGQQSF 63
+R+ + +
Sbjct: 101 CNTRLDVTARPNQ 113
Score = 48.9 bits (117), Expect = 3e-07
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 76 GDHPIFGNRFRAI---NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
+ + N R + GR L I+ V + D G Y+V+A NE+G +T L V ++
Sbjct: 52 NNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 90.1 bits (223), Expect = 1e-20
Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 39/195 (20%)
Query: 359 IAVKVGTRARLLVEIRSPT---EIKIHWYRNDRKLEE-----------------NKIYRT 398
+ +G R L R + EI++ W++ E+ +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 399 QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAIL 458
N +F+ +++ ++ G + C + LSV+ P + E
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP-----LTLSVHSERSQ 115
Query: 459 TEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA-------------GDIFALTANPKDPSS 504
+++ C V P P + W A G +
Sbjct: 116 FPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPW 175
Query: 505 LGTYTCEAVNCMGAA 519
TC N A
Sbjct: 176 HLPVTCVGKNDKEEA 190
Score = 81.2 bits (200), Expect = 2e-17
Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 38/193 (19%)
Query: 760 ATVNEEFKFT---VQVSISPEPKVSWFRDDQQVVESDNVKILKETL-------------- 802
A + E T +VS+ PE +VSWF+ + ++ + +
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 803 --GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLS 859
L + A ++ + C + L + P + +
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP-----LTLSVHSERSQFP 117
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH--KIISGEDGTCCL-----------G 906
+ + + C V P P ++W A ++ +DG+ +
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL 177
Query: 907 IYTCEAHNCMGTT 919
TC N
Sbjct: 178 PVTCVGKNDKEEA 190
Score = 80.8 bits (199), Expect = 2e-17
Identities = 30/196 (15%), Positives = 49/196 (25%), Gaps = 20/196 (10%)
Query: 252 IAVKVGTRARLL-----VEIRSPTEIKC-QFDLNNTIPFSFRAQGDHPIFGNRFRA---I 302
+ +G R L V + E+ + R D FR I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 303 NRDGRTE-LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 361
+R T L + G Y T + LSV P
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV--VKP--LTLSVHSERSQF 116
Query: 362 KVGTRARLLVEIR-SPTEIKIHWYRNDRKL----EENKIYRTQHDGNFYFIDLSSVSLFD 416
+ + + P + W + N + DG+ S+
Sbjct: 117 PDFSVLTVTCTVNAFPH-PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPW 175
Query: 417 SGRWTCLAENAVGRSH 432
TC+ +N +H
Sbjct: 176 HLPVTCVGKNDKEEAH 191
Score = 75.8 bits (186), Expect = 1e-15
Identities = 29/200 (14%), Positives = 49/200 (24%), Gaps = 46/200 (23%)
Query: 560 VKAKIGTSAILEC---QVLVPPWPRSIYWY-NKEGVVEA----------------SDKYH 599
V A +G L +V + P + W+ G + +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIE-VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFD 59
Query: 600 IMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK 659
I + + + DG + C ++ V+ P +
Sbjct: 60 IHRSA-NTFFLVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKP-----LTLSVHSE 112
Query: 660 AVMTDDG-LVSFECKVVGFPTPTLQWFKDN----EELKPGDVYQLTGTSSL--------- 705
D +++ C V FP P +QW SL
Sbjct: 113 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP 172
Query: 706 ----GSYCCVAKNVMGKAES 721
CV KN +A
Sbjct: 173 KPWHLPVTCVGKNDKEEAHG 192
Score = 65.4 bits (159), Expect = 4e-12
Identities = 23/179 (12%), Positives = 41/179 (22%), Gaps = 18/179 (10%)
Query: 66 NDDVPFNRAQGDHPIFGNRFRA---INRDGRTE-LNIRRVRRDDGGRYSVTASNESGYST 121
+ V R D FR I+R T L + G Y T
Sbjct: 35 EEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVT 94
Query: 122 AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSF 179
+ LSV P + + + P ++ P
Sbjct: 95 KQEHLSV--VKP--LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP-EGVEPAPT 149
Query: 180 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
A G + ++ + + + N+ + + SQ
Sbjct: 150 AANGGVMKEKDGSLSV-------AVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYLSQ 201
Score = 65.4 bits (159), Expect = 5e-12
Identities = 27/213 (12%), Positives = 49/213 (23%), Gaps = 24/213 (11%)
Query: 145 IAVKVGTRARLL-----VEIRSPTEIKC-QFDLNNTIPFSFRAQGDHPIFGNRFRA---I 195
+ +G R L V + E+ + R D FR I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 196 NRDGRTE-LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 254
+R T L + G Y T + LSV P
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV--VKP--LTLSVHSERSQF 116
Query: 255 KVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
+ + + P ++ P A G + ++
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMP-EGVEPAPTAANGGVMKEKDGSLSV-------AVD 168
Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
+ + + N+ + + SQ
Sbjct: 169 LSLPKPWHLPVTCVGKNDKEEAHGVYVSGYLSQ 201
Score = 65.1 bits (158), Expect = 7e-12
Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 51/198 (25%)
Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKP--------------------GDVYQLTGTSSL- 705
L S+ +V P + WFK + D+++ T L
Sbjct: 11 LTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLV 70
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
G+Y C K + L++ K +
Sbjct: 71 VTAANISHDGNYLCRMKLGETEVTKQEHLSV------------------VKPLTLSVHSE 112
Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES--DNVKILKETLGVCHLKI-HALE 813
Q T V+ P P V W + N ++KE G + + +L
Sbjct: 113 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP 172
Query: 814 VADQAEWKCIATNDFGQS 831
C+ ND ++
Sbjct: 173 KPWHLPVTCVGKNDKEEA 190
Score = 63.1 bits (153), Expect = 3e-11
Identities = 27/222 (12%), Positives = 50/222 (22%), Gaps = 40/222 (18%)
Query: 434 SCELS-VLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDI 492
+ V + + +F G + + + P + +
Sbjct: 12 TSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS-----ANT 66
Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
F L + S G Y C +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV--------------------KPLT 106
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA----SDKYHIMADGLGGY 608
E + + + C V P P + W EGV A + DG
Sbjct: 107 LSVHSERSQFPDFSVLTVTCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDG---- 161
Query: 609 SIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
S+ + ++ CV + YV + +
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAH--GVYVSGYLSQ 201
Score = 38.5 bits (89), Expect = 0.005
Identities = 14/124 (11%), Positives = 26/124 (20%), Gaps = 30/124 (24%)
Query: 36 GTYTCEAVNCMGAAFSTSRV-----------IARGQQSFLDNDDVPFN-RAQGD------ 77
G Y C G T + + + F D +
Sbjct: 80 GNYLCRMKL--GETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQ 137
Query: 78 ---------HPIFGNRFRAINRDGRTEL-NIRRVRRDDGGRYSVTASNESGYSTAKFELS 127
P N +DG + + + + N+ + +
Sbjct: 138 WLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSG 197
Query: 128 VESQ 131
SQ
Sbjct: 198 YLSQ 201
Score = 34.6 bits (79), Expect = 0.096
Identities = 19/119 (15%), Positives = 29/119 (24%), Gaps = 34/119 (28%)
Query: 861 GGAVNLECKVIGV---PQPTLKWFKDG---RELKAGDIHKI-------------ISGEDG 901
G V L V P+ + WFK G ++ G +H I
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 902 TCCL----------GIYTCEAHNCMGTTSSSAALL-----GFEDKSQIEKAEEGKKALI 945
T L G Y C + L S+ + + +
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124
Score = 33.1 bits (75), Expect = 0.27
Identities = 9/61 (14%), Positives = 11/61 (18%), Gaps = 13/61 (21%)
Query: 2 GIPTPQLIWYKDNKKIKA-------------GDIFALTANPKDPSSLGTYTCEAVNCMGA 48
P P + W A G + TC N
Sbjct: 130 AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEE 189
Query: 49 A 49
A
Sbjct: 190 A 190
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 85.1 bits (211), Expect = 4e-20
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCCL 905
PK + + EG + + C G P P + W GR++ + + + I D L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
G+YT N G+ S++ +
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Score = 80.4 bits (199), Expect = 2e-18
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
PK + + P P+V+W +++ + + ++ T +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
L I ++ D + N+FG + +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 76.2 bits (188), Expect = 5e-17
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 16/95 (16%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----GTSSL 705
P+ + D+G +++ C G PTP + W ++ + + ++L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDI 730
G Y N G ++ + I I
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 76.2 bits (188), Expect = 7e-17
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFY 405
P DI++ G + PT ++ W RK+ E + ++ +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPT-PEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ + V D G +T N G + + +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 69.6 bits (171), Expect = 1e-14
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
P DI++ G + PT E+ I + RF
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG-GRKIHSQEQG---------RF 54
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 55 HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 69.6 bits (171), Expect = 1e-14
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
P DI++ G + PT E+ I + RF
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG-GRKIHSQEQG---------RF 54
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 55 HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 69.6 bits (171), Expect = 1e-14
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK-DPSS 504
P I ++G +++ C G PTP++ W +KI + + D ++
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVI 526
L G YT N G+ +T +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 60.8 bits (148), Expect = 2e-11
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASD--KYHIMAD 603
PG P ++ G + C P P + W G + + + ++HI
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWS-CGGRKIHSQEQGRFHIENT 59
Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
++ I ++ D G + + G + +H+
Sbjct: 60 D-DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT-VNIHI 97
Score = 55.8 bits (135), Expect = 8e-10
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 84 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
RF N D T L I V++ DGG Y+++ NE G +A + + S
Sbjct: 53 RFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 47.7 bits (114), Expect = 6e-07
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK-DPSSL----------GTYTCEAVNCMGAAF 50
G PTP++ W +KI + + D ++L G YT N G+
Sbjct: 31 GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDS 90
Query: 51 STSRVI 56
+T +
Sbjct: 91 ATVNIH 96
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 84.7 bits (210), Expect = 6e-20
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
P F LK +G +C V G P P + W + + ++ G + L
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70
Query: 706 ------GSYCCVAKNVMGKAESSTQLTI 727
G+Y C+A+N +G+ S +T+
Sbjct: 71 ALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 84.7 bits (210), Expect = 7e-20
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
P F LK + EG L+C V G P P + W +G+ ++ E G L
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC----EAGVAEL 66
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
G YTC A N +G S SA +
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQVSCSAWV 96
Score = 82.4 bits (204), Expect = 4e-19
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
AP F LK C ++F V +P P+++W + Q + + +
Sbjct: 6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE----A 61
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
GV L I D + C+A N GQ S ++ ++
Sbjct: 62 GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 81.2 bits (201), Expect = 1e-18
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQ 399
S S + AP+F L D AV G L +R +P +I W N + ++ +
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPV-PRITWLLNGQPIQYARSTCEA 61
Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ + D G +TCLAENA+G+ CS ++V
Sbjct: 62 GVAELH---IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 76.6 bits (189), Expect = 5e-17
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 434 SCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDI 492
S + V P F+ L+ +G L+C V G P P++ W + + I+
Sbjct: 3 SGSSGMEVA-----PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS 57
Query: 493 FALT---------ANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
A P+D GTYTC A N +G ++ V
Sbjct: 58 TCEAGVAELHIQDALPEDH---GTYTCLAENALGQVSCSAWVT 97
Score = 60.4 bits (147), Expect = 2e-11
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 184
S S + AP+F L D AV G L +R +P I + I ++
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLN-GQPIQYA------ 55
Query: 185 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
R+ G EL+I+ +D G Y+ A N G + ++V
Sbjct: 56 --------RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 60.4 bits (147), Expect = 2e-11
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 291
S S + AP+F L D AV G L +R +P I + I ++
Sbjct: 3 SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLN-GQPIQYA------ 55
Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
R+ G EL+I+ +D G Y+ A N G + ++V
Sbjct: 56 --------RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 58.1 bits (141), Expect = 1e-10
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP F +++ G +L+C V P PR I W G + A G
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPR-ITWL-LNGQPIQYARSTCEA---GVAE 65
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
+ I D G + C+A ++ G SA
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSA 94
Score = 52.3 bits (126), Expect = 2e-08
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALT---------ANPKDPSSLGTYTCEAVNCMGAAFST 52
G P P++ W + + I+ A P+D GTYTC A N +G +
Sbjct: 37 GTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDH---GTYTCLAENALGQVSCS 93
Query: 53 SRVI 56
+ V
Sbjct: 94 AWVT 97
Score = 44.2 bits (105), Expect = 1e-05
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
R+ G EL+I+ +D G Y+ A N G + ++V
Sbjct: 56 RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 84.3 bits (209), Expect = 1e-19
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
+ L + + + EG + C G P PT+ W + G+ L H++ +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-TKYKSTF 72
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
G Y+ N G + L
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 82.4 bits (204), Expect = 5e-19
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
R + +++ +G F C G P PT+ W + + L +Q+T S+
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
G+Y V +N GK E+ LTI+
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 80.9 bits (200), Expect = 2e-18
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
A + + +S E +F+ P P V+W R Q + S ++ T
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT-TTKYKSTF 72
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLK 838
+I +++ +D+ + + N G+ L
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 80.9 bits (200), Expect = 2e-18
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQH 400
S+ A + + + V G AR + PT + W R + L + ++
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPT---VTWLRKGQVLSTSARHQVTT 65
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
++SSV D G ++ + EN+ G+ L++
Sbjct: 66 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 73.9 bits (182), Expect = 5e-16
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
K A + ++ +G + C G P P + W + + + +T
Sbjct: 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 502 PSSL----------GTYTCEAVNCMGAAFSTSRVI 526
S+ G Y+ N G + +
Sbjct: 70 -STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 64.3 bits (157), Expect = 1e-12
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 187
S+ A + + + V G AR + P + +
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK-------------GQVL 55
Query: 188 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
R + ++ I V+ D G YSV N G A+F L+++
Sbjct: 56 STSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 64.3 bits (157), Expect = 1e-12
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 294
S+ A + + + V G AR + P + +
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK-------------GQVL 55
Query: 295 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
R + ++ I V+ D G YSV N G A+F L+++
Sbjct: 56 STSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 63.9 bits (156), Expect = 1e-12
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
A + + ++ G SA C P P + W K V+ S ++ + +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPT-VTWLRKGQVLSTSARHQVTTTK-YKST 71
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
EI+ ++A D+G + V +S G ++
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEF 100
Score = 51.6 bits (124), Expect = 3e-08
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P + W + + + +T S+ G Y+ N G +
Sbjct: 40 GEPVPTVTWLRKGQVLSTSARHQVTTTKYK-STFEISSVQASDEGNYSVVVENSEGKQEA 98
Query: 52 TSRVI 56
+
Sbjct: 99 EFTLT 103
Score = 50.8 bits (122), Expect = 6e-08
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
+ R + ++ I V+ D G YSV N G A+F L+++
Sbjct: 51 KGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 84.3 bits (209), Expect = 1e-19
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 838 KLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKII 896
+L V + P L+ S G ++ + C G P P + WFKD L +
Sbjct: 2 QLTVLER-VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL- 59
Query: 897 SGEDGTCCL----------GIYTCEAHNCMGTTSSSAALL--GFEDKSQIE 935
+DG L G+YTC+A + +G A + G ++K+ +E
Sbjct: 60 --KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 108
Score = 83.5 bits (207), Expect = 2e-19
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 739 KLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL 798
+ L + AP L++ ++ E + + S +P P++ WF+D++ +VE + +
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL- 59
Query: 799 KETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
G +L I + D+ + C A + G + F +
Sbjct: 60 --KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
Score = 81.6 bits (202), Expect = 1e-18
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 339 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYR 397
+L+V +V P L + +G + +P +I W++++ L E+
Sbjct: 2 QLTVLERVA--PTITGNLENQTTSIGESIEVSCTASGNP-PPQIMWFKDNETLVEDSGIV 58
Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ I V D G +TC A + +G + +
Sbjct: 59 LKDGNRNLTI--RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
Score = 80.5 bits (199), Expect = 3e-18
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-GTSSL--- 705
P +L+ T G + C G P P + WFKDNE L L G +L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 69
Query: 706 -------GSYCCVAKNVMGKAESSTQLTIE 728
G Y C A +V+G A+ IE
Sbjct: 70 RVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Score = 75.8 bits (187), Expect = 1e-16
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 436 ELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA 494
+L+VL A P T LE T G ++ + C G P PQ++W+KDN+ +
Sbjct: 2 QLTVLERVA---PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58
Query: 495 LTANPK-------DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSF 533
L + G YTC+A + +G A + I G Q
Sbjct: 59 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104
Score = 63.9 bits (156), Expect = 2e-12
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 19/123 (15%)
Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQ 182
+L+V +V P L + +G + +P +I D
Sbjct: 2 QLTVLERVA--PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD------------ 47
Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
+ + + + +DG L IRRVR++D G Y+ A + G + + +E +
Sbjct: 48 -NETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG-AQEK 104
Query: 243 PAF 245
Sbjct: 105 TNL 107
Score = 63.9 bits (156), Expect = 2e-12
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 19/123 (15%)
Query: 232 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQ 289
+L+V +V P L + +G + +P +I D
Sbjct: 2 QLTVLERVA--PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD------------ 47
Query: 290 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
+ + + + +DG L IRRVR++D G Y+ A + G + + +E +
Sbjct: 48 -NETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG-AQEK 104
Query: 350 PAF 352
Sbjct: 105 TNL 107
Score = 59.7 bits (145), Expect = 5e-11
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
AP +EN IG S + C P P+ I W+ K+ D ++ D G +
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQ-IMWF-KDNETLVEDSGIVLKD--GNRN 65
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
+ I + D+G + C A S G + A+ +
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGA 101
Score = 51.6 bits (124), Expect = 3e-08
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPK-------DPSSLGTYTCEAVNCMGAAFSTSR 54
G P PQ++W+KDN+ + L + G YTC+A + +G A +
Sbjct: 36 GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 95
Query: 55 VIARGQQSF 63
I G Q
Sbjct: 96 FIIEGAQEK 104
Score = 49.3 bits (118), Expect = 2e-07
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
+ + + + +DG L IRRVR++D G Y+ A + G + + +E +
Sbjct: 47 DNETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG-AQEK 104
Query: 136 PAF 138
Sbjct: 105 TNL 107
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 84.3 bits (209), Expect = 1e-19
Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
+ + P+ I+ + + E + +V+ + +W + +Q+ ES+++K+ + +
Sbjct: 3 SGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-ENSEN 61
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
L I A + + N G L
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Score = 82.8 bits (205), Expect = 4e-19
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
P+ ++ + + G +V L KV G T W K ++++ + K+ + + L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-SENGSKLT 66
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
G YT N +G+ + L
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNL 95
Score = 78.1 bits (193), Expect = 2e-17
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
P+ ++ + G V KV G T W K ++++ + ++ S L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
G Y + +N +G ++ LT+ D
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
Score = 77.8 bits (192), Expect = 3e-17
Identities = 18/94 (19%), Positives = 39/94 (41%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
P I+ D V+ G L ++ I W + ++++E++ + ++ N +
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ + G +T L EN +G L+V+
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 72.0 bits (177), Expect = 3e-15
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 17/114 (14%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
P I+ D V+ G L ++ + I
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-------------RKQIQESEH 53
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 245
+ N + ++L I R++ G Y++ N+ G A+ L+V PD PA
Sbjct: 54 MKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKPDPPAG 106
Score = 72.0 bits (177), Expect = 3e-15
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 17/114 (14%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 298
P I+ D V+ G L ++ + I
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-------------RKQIQESEH 53
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 352
+ N + ++L I R++ G Y++ N+ G A+ L+V PD PA
Sbjct: 54 MKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKPDPPAG 106
Score = 68.5 bits (168), Expect = 5e-14
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
P + E G +V L KV G W K K+I+ + + N ++ S L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVE-NSENGSKL 65
Query: 506 ----------GTYTCEAVNCMGAAFSTSRVI 526
G YT N +G+ + +
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Score = 58.9 bits (143), Expect = 1e-10
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
I + N + ++L I R++ G Y++ N+ G A+ L+V PD
Sbjct: 44 FRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKPD 102
Query: 135 APAF 138
PA
Sbjct: 103 PPAG 106
Score = 58.5 bits (142), Expect = 2e-10
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
P I+ E+ K + G S L +V W ++ S+ + G
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPIT-CTWMKFRKQIQESEHMKVENSE-NGSK 64
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
+ I G + + + G +Q + + V+
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQ-AQVNLTVV 98
Score = 48.1 bits (115), Expect = 7e-07
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G W K K+I+ + + N ++ S L G YT N +G+ +
Sbjct: 33 GTQPITCTWMKFRKQIQESEHMKVE-NSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91
Query: 52 TSRVI 56
+
Sbjct: 92 QVNLT 96
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 86.1 bits (213), Expect = 2e-19
Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 19/180 (10%)
Query: 756 KSCQATVNEEFKFTVQVSI--SPEPKVSWFR--DDQQVVESDNVKILKET------LGVC 805
+ ++ + + W + D +++ + K +
Sbjct: 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG 66
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVN 865
LKI L+ DQ +K + G+++ L + + KPK +
Sbjct: 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK-------ISWTCINTT 119
Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
L C+V+ P L ++DG+ LK ++I+ + T + C A N + SS +
Sbjct: 120 LTCEVMNGTDPELNLYQDGKHLKLS--QRVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177
Score = 81.1 bits (200), Expect = 1e-17
Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 31/193 (16%)
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWP-RSIYWY------------NKEGVVEASDKYHI 600
I +G L+ I W ++ + D Y +
Sbjct: 3 ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62
Query: 601 MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAY-VHVLMPKNYRKPRFVESLK 659
+G +++I +L+ D +K + G + + + KP+
Sbjct: 63 FKNG----TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER--VSKPK------ 110
Query: 660 AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD---VYQLTGTSSLGSYCCVAKNVM 716
+ + C+V+ P L ++D + LK ++ T + S + C A N +
Sbjct: 111 -ISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLS-AKFKCTAGNKV 168
Query: 717 GKAESSTQLTIED 729
K S ++ +
Sbjct: 169 SKESSVEPVSCPE 181
Score = 76.8 bits (189), Expect = 4e-16
Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 20/179 (11%)
Query: 358 DIAVKVGTRARLLVEIRSPTEIK--IHWYRNDRKLEENKIYR---TQHDGNFYFID---- 408
+ +G L + ++ I W + K + + + T + + Y +
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 409 --LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSL 466
+ + D + + G++ + + + P I +L
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK-------ISWTCINTTL 120
Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
C+VM P+L Y+D K +K + + S + C A N + S V
Sbjct: 121 TCEVMNGTDPELNLYQDGKHLKLSQ--RVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177
Score = 65.7 bits (160), Expect = 2e-12
Identities = 27/193 (13%), Positives = 70/193 (36%), Gaps = 25/193 (12%)
Query: 251 DIAVKVGTRARLLVEIRSPT----EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 306
+ +G L + + +IK + + FR + + + ++ + ++G
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNG 66
Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 366
L I+ ++ DD Y V+ + G + + ++ Q + I
Sbjct: 67 --TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW-------TCIN 117
Query: 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426
L E+ + T+ +++ Y++ + L+ ++ + + S ++ C A N
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKCTAGN 166
Query: 427 AVGRSHCSCELSV 439
V + +S
Sbjct: 167 KVSKESSVEPVSC 179
Score = 44.1 bits (104), Expect = 6e-05
Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 35/203 (17%)
Query: 144 DIAVKVGTRARLLVEIRSPT----EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 199
+ +G L + + +IK + + FR + + + ++ + ++G
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNG 66
Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
L I+ ++ DD Y V+ + G + + ++ Q + I
Sbjct: 67 --TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW-------TCIN 117
Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
L E+ + T+ + + + R + +
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGK-------------------HLKLSQR--VITHKWTTSL 156
Query: 320 GGRYSVTASNESGYSTAKFELSV 342
++ TA N+ ++ +S
Sbjct: 157 SAKFKCTAGNKVSKESSVEPVSC 179
Score = 41.0 bits (96), Expect = 7e-04
Identities = 19/171 (11%), Positives = 48/171 (28%), Gaps = 29/171 (16%)
Query: 65 DNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF 124
+D + + + F + L I+ ++ DD Y V+ + G + +
Sbjct: 38 TSDKKKIAQFRKEKETFKEKDT-YKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 96
Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD 184
++ Q + I L E+ + T+ + +
Sbjct: 97 IFDLKIQERVSKPKISW-------TCINTTLTCEVMNGTDPELNLYQDGK---------- 139
Query: 185 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+ R + + ++ TA N+ ++ +S
Sbjct: 140 ---------HLKLSQR--VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 40.3 bits (94), Expect = 0.001
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
P+L Y+D K +K + + S + C A N + S V
Sbjct: 126 NGTDPELNLYQDGKHLKLSQ--RVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177
Score = 40.3 bits (94), Expect = 0.001
Identities = 23/200 (11%), Positives = 44/200 (22%), Gaps = 62/200 (31%)
Query: 451 TKELEAILTEQGTVSLECKVMGIPTPQLIWYK------------DNKKIKAGDIFALTAN 498
E L + + + M + W K + + K D + L N
Sbjct: 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN 65
Query: 499 PKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG 548
+L Y + G + +
Sbjct: 66 ----GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK---------------IQERV 106
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
P N L C+V+ P + Y ++ S + +
Sbjct: 107 SKPKISWTCINT--------TLTCEVMNGTDP-ELNLYQDGKHLKLSQRVIT-------H 150
Query: 609 SIEINYLEAVDDGEWKCVAT 628
+ ++KC A
Sbjct: 151 KWTTS-----LSAKFKCTAG 165
Score = 33.3 bits (76), Expect = 0.24
Identities = 15/162 (9%), Positives = 34/162 (20%), Gaps = 42/162 (25%)
Query: 1 MGIPTPQLIWYK------------DNKKIKAGDIFALTANPKDPSSL----------GTY 38
M + W K + + K D + L N +L Y
Sbjct: 26 MSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN----GTLKIKHLKTDDQDIY 81
Query: 39 TCEAVNCMGAAFSTSRVIAR------GQQSFLDNDDVPFN-RAQGDHP-----IFGNRFR 86
+ G + + + +
Sbjct: 82 KVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDG--K 139
Query: 87 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
+ R + + ++ TA N+ ++ +S
Sbjct: 140 HLKLSQR--VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 81.7 bits (202), Expect = 1e-18
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 21/120 (17%)
Query: 719 AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEP 778
S + ++ + IE L+ F ++S +
Sbjct: 1 GSSGSSGLVQG-----------------RRVHIIEDLEDVDVQEGSSATFRCRISPANYE 43
Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
V WF D + ++ +I + G L + L + D A G S L+
Sbjct: 44 PVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALR 99
Score = 81.3 bits (201), Expect = 2e-18
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
++ +E+L+ V + EG + C++ + WF D L A ++++I + G
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71
Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
L G EA G +SAAL
Sbjct: 72 LTLRQLALKDSGTIYFEA----GDQRASAAL 98
Score = 72.8 bits (179), Expect = 2e-15
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 12/120 (10%)
Query: 335 TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK 394
++ V+ + I L D+ V+ G+ A I +HW+ + L N+
Sbjct: 2 SSGSSGLVQGR---RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58
Query: 395 IYRTQ-HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453
+ G ++ + L ++L DSG A G S L V F++
Sbjct: 59 LNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK----PSVFSRS 110
Score = 68.6 bits (168), Expect = 5e-14
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSS 704
R+ +E L+ V +G +F C++ + WF D L ++ ++ G
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71
Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIED 729
L G+ A G +S L + +
Sbjct: 72 LTLRQLALKDSGTIYFEA----GDQRASAALRVTE 102
Score = 65.9 bits (161), Expect = 4e-13
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 433 CSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
V ++LE + ++G + + C++ + W+ D + A +
Sbjct: 3 SGSSGLVQGR----RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58
Query: 492 IFALTANPKDPSSL----------GTYTCEA 512
+ + A P L GT EA
Sbjct: 59 LNEIDAQPGGYHVLTLRQLALKDSGTIYFEA 89
Score = 62.0 bits (151), Expect = 8e-12
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA 602
S + G I+++E+V + G+SA C++ + ++W+ + + A++ I A
Sbjct: 6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYE-PVHWFLDKTPLHANELNEIDA 64
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSS 631
G + + + L D G A
Sbjct: 65 QPGGYHVLTLRQLALKDSGTIYFEAGDQR 93
Score = 49.7 bits (119), Expect = 2e-07
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 23/132 (17%)
Query: 121 TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR 180
++ V+ + I L D+ V+ G+ A I + L+
Sbjct: 2 SSGSSGLVQGR---RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLD-------- 50
Query: 181 AQGDHPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
P+ + G L +R++ D G A G A L V +
Sbjct: 51 ---KTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK 103
Query: 239 VPDAPAFIRRLH 250
F R
Sbjct: 104 ---PSVFSRSGP 112
Score = 49.7 bits (119), Expect = 2e-07
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 23/132 (17%)
Query: 228 TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR 287
++ V+ + I L D+ V+ G+ A I + L+
Sbjct: 2 SSGSSGLVQGR---RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLD-------- 50
Query: 288 AQGDHPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
P+ + G L +R++ D G A G A L V +
Sbjct: 51 ---KTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK 103
Query: 346 VPDAPAFIRRLH 357
F R
Sbjct: 104 ---PSVFSRSGP 112
Score = 41.6 bits (98), Expect = 1e-04
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 10/51 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEA 42
+ W+ D + A ++ + A P L GT EA
Sbjct: 39 PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA 89
Score = 35.4 bits (82), Expect = 0.016
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 9/70 (12%)
Query: 76 GDHPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
P+ + G L +R++ D G A G A L V +
Sbjct: 50 DKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK-- 103
Query: 134 DAPAFIRRLH 143
F R
Sbjct: 104 -PSVFSRSGP 112
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 86.8 bits (214), Expect = 1e-18
Identities = 52/323 (16%), Positives = 89/323 (27%), Gaps = 76/323 (23%)
Query: 447 APFFTKE-LEAILTEQGTVSLECKVMGI-PTPQLI---WYKDNKKIKAGDIFALTANPKD 501
A + + + +L V G P P + W KD++ + LT
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH-ENNTATLTVADAT 60
Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVK 561
+ G+Y + S V LM + I E ++
Sbjct: 61 SENAGSYKVTVQDTDTMTSVESEVF-----------------LMEEAELIVNITEPQHFY 103
Query: 562 AKIGTSAILECQVLV-------PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
T L V + W E V++ I I
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID------------TTQDITIQE 151
Query: 615 LEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKV 674
A +G + S SA+ +L N + VES + ++ +S V
Sbjct: 152 FTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD-VVESKTVALGNE--ISLNYVV 208
Query: 675 --------VGFPTPTL--QWFKDNE-ELKP----------GDVYQLTGTSSL-------- 705
G P T+ W+ E +L P + + +T L
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD 268
Query: 706 --GSYCCVAKNVMGKAESSTQLT 726
+ CVAK + + ++
Sbjct: 269 DTAKFWCVAKLYQQIEDETVEVA 291
Score = 83.0 bits (204), Expect = 2e-17
Identities = 46/299 (15%), Positives = 84/299 (28%), Gaps = 35/299 (11%)
Query: 61 QSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGR------TELNIRRVRRDDGGRYSVTA 113
+ FL D GD P+ N +D + L + ++ G Y VT
Sbjct: 12 RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTV 71
Query: 114 SNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNN 173
+ ++ + E+ + + I V T L ++ +
Sbjct: 72 QDTDTMTSVESEVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYEL 130
Query: 174 TIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 233
+S G+ I D ++ I+ D G Y+V ES S A
Sbjct: 131 HYSWSK---GEDVI----------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASAST 177
Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP 293
+ + + V +G L + N TI +++ Q +
Sbjct: 178 KI--MLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQ 235
Query: 294 IF----------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+ +I DG L DD ++ A E++
Sbjct: 236 LSPTLIGSEVGEALEGFSITPDGH--LFKESATYDDTAKFWCVAKLYQQIEDETVEVAA 292
Score = 82.6 bits (203), Expect = 4e-17
Identities = 43/301 (14%), Positives = 87/301 (28%), Gaps = 46/301 (15%)
Query: 173 NTIPFSFRAQGDHPIFGNRFRAINRDGR------TELNIRRVRRDDGGRYSVTASNESGY 226
+ + GD P+ N +D + L + ++ G Y VT +
Sbjct: 18 DGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTM 77
Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 286
++ + E+ + + I V T L ++ + +S
Sbjct: 78 TSVESEVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK 136
Query: 287 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 346
G+ I D ++ I+ D G Y+V ES S A + +
Sbjct: 137 ---GEDVI----------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI--ML 181
Query: 347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE----------IKIHWYRN---------- 386
+ V +G L + IK +WY
Sbjct: 182 ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLI 241
Query: 387 -DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY 445
E + + DG+ + S + D+ ++ C+A+ + E++ +
Sbjct: 242 GSEVGEALEGFSITPDGHLF---KESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKC 298
Query: 446 K 446
Sbjct: 299 S 299
Score = 79.5 bits (195), Expect = 4e-16
Identities = 37/292 (12%), Positives = 75/292 (25%), Gaps = 61/292 (20%)
Query: 280 NTIPFSFRAQGDHPIFGNRFRAINRDGR------TELNIRRVRRDDGGRYSVTASNESGY 333
+ + GD P+ N +D + L + ++ G Y VT +
Sbjct: 18 DGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTM 77
Query: 334 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR--------SPTEIKIHWYR 385
++ + E+ + + I V T L ++ E+ W +
Sbjct: 78 TSVESEVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK 136
Query: 386 NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY 445
+ ++ + + + +G +T S S +++
Sbjct: 137 GEDVIDTTQDIT-----------IQEFTADKNGVYTVKVWGESEDSAASASTKIMLATM- 184
Query: 446 KAPFFTKELEAILTEQGTVSLECKV----------MGIPTPQLIWYKDNKKIKA------ 489
+ +SL V M T + WY + +
Sbjct: 185 -NVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGS 243
Query: 490 --------------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA 527
G +F +A D + C A T V A
Sbjct: 244 EVGEALEGFSITPDGHLFKESATYDDT---AKFWCVAKLYQQIEDETVEVAA 292
Score = 76.0 bits (186), Expect = 5e-15
Identities = 40/269 (14%), Positives = 70/269 (26%), Gaps = 40/269 (14%)
Query: 2 GIPTPQLI---WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR 58
P P + W KD++ + LT + G+Y + S V
Sbjct: 29 DEPLPSNLTYTWTKDDQPH-ENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLM 87
Query: 59 GQQSFLDNDDVPFN----------------RAQGDHPIFGNRFR------AINRDGRTEL 96
+ + N P + + G P D ++
Sbjct: 88 EEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI 147
Query: 97 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 156
I+ D G Y+V ES S A + + + V +G L
Sbjct: 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKI--MLATMNVDQDVVESKTVALGNEISLN 205
Query: 157 VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF----------GNRFRAINRDGRTELNIR 206
+ N TI +++ Q + + +I DG L
Sbjct: 206 YVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH--LFKE 263
Query: 207 RVRRDDGGRYSVTASNESGYSTAKFELSV 235
DD ++ A E++
Sbjct: 264 SATYDDTAKFWCVAKLYQQIEDETVEVAA 292
Score = 75.2 bits (184), Expect = 1e-14
Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 71/302 (23%)
Query: 668 VSFECKVVG-FPTP---TLQWFKDNEELKP-GDVYQLTGTSSL--GSYCCVAKNVMGKAE 720
+ V G P P T W KD++ + + +S GSY ++
Sbjct: 20 FTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTS 79
Query: 721 SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS----- 775
+ ++ L+ + I + + + + V S
Sbjct: 80 VES---------------EVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTP 124
Query: 776 ---PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
E SW + + + + + + I + + S
Sbjct: 125 ADNYELHYSWSKGEDVIDTTQD------------ITIQEFTADKNGVYTVKVWGESEDSA 172
Query: 833 TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI--------GVPQPTLK--WF- 881
S K+ + +E + G ++L V G+P T+K W+
Sbjct: 173 ASASTKIMLATMNVDQDVVESKTV--ALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYL 230
Query: 882 -KDGR---ELKAGDIHKIISG----EDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
++G+ L ++ + + G DG + C A + +
Sbjct: 231 QREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Query: 926 LG 927
Sbjct: 291 AA 292
Score = 74.5 bits (182), Expect = 2e-14
Identities = 37/339 (10%), Positives = 81/339 (23%), Gaps = 69/339 (20%)
Query: 550 APIFIKEVENVKAKIGTSAILECQV---LVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
A + G L V P + W K+ +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWT-KDDQPHEN----------N 50
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
++ + + + G +K + + + + + +
Sbjct: 51 TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEA---ELIVNITEPQHFYVSSQ 107
Query: 667 L-VSFECKVV---GFPTP-----TLQWFKDNEELKPGDVYQLTGTSSL--GSYCCVAKNV 715
V V G W K + + + ++ G Y
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGE 167
Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE--GLKSCQATVNEEFKFTVQVS 773
+ +S I A ++ ++S + E VS
Sbjct: 168 SEDSAASASTKI------------------MLATMNVDQDVVESKTVALGNEISLNYVVS 209
Query: 774 I----------SPEPKVSWF--RDDQQVVESDNVKILKETLGVC-----HLKIHALEVAD 816
+ K +W+ R+ Q ++ + G HL + D
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269
Query: 817 QAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK 855
A++ C+A + + V + +E +K
Sbjct: 270 TAKFWCVAKLYQQIEDET----VEVAASTSRKCSMEVVK 304
Score = 71.8 bits (175), Expect = 1e-13
Identities = 26/193 (13%), Positives = 49/193 (25%), Gaps = 30/193 (15%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVS-ISPEPK---VSWFRDDQQVVESDNVKILKETLG 803
A + F T V+ P P +W +DDQ +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA--------- 52
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGA 863
L + + +K + + + + + E +S
Sbjct: 53 --TLTVADATSENAGSYKVTVQDTDTMTSVESEV-FLMEEAELIVNITEPQHFYVSSQTD 109
Query: 864 VNLECKVI---GVPQP-----TLKWFKDGRELKAGDIHKI--ISGEDGTCCLGIYTCEAH 913
V L V G W K + I + + G+YT +
Sbjct: 110 VELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKN----GVYTVKVW 165
Query: 914 NCMGTTSSSAALL 926
+++SA+
Sbjct: 166 GESEDSAASASTK 178
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 80.4 bits (199), Expect = 2e-18
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
++ + G + + +I ++ WY R+LE ++ Y ++ +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ ++ D G + C N G EL V
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 80.4 bits (199), Expect = 2e-18
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 848 PKFLEELK-AVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKIISGEDGTCCL 905
++ AV EGG V CK+ Q T + W+ R+L+ + ++I EDG L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-EDGVAIL 60
Query: 906 ----------GIYTCEAHNCMGTTSSSAALL 926
G Y C+ N G SS A L
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
Score = 76.2 bits (188), Expect = 5e-17
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCH 806
+ K+ ++ + +V+W+ +Q+ S+ +I E GV
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED-GVAI 59
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
L + + D ++C ND+G+ + L
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
Score = 75.0 bits (185), Expect = 1e-16
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLT---GTSSL- 705
+ + ++G V + CK+ + T + W+ +L+ + Y++T G + L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIR 731
G+Y C N G+ S +L ++ +R
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 67.3 bits (165), Expect = 7e-14
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
+ ++ + + G C++ + WY +E S+KY I + G
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED-GVAI 59
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
+ + + +DDG ++C + G A
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Score = 67.0 bits (164), Expect = 1e-13
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTP-QLIWYKDNKKIKAGDIFALTANPKDPSS 504
+ ++ + E+G V CK+ Q+ WY ++++ + + +T +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED-GVAI 59
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQQ 531
L GTY C+ VN G S + + +G +
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 58.1 bits (141), Expect = 1e-10
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIF-GN 190
++ + G + + +I T++ F +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-------------VRQLENSE 47
Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
++ DG L ++ + + D G Y N+ G ++ EL V+
Sbjct: 48 KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 58.1 bits (141), Expect = 1e-10
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIF-GN 297
++ + G + + +I T++ F +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-------------VRQLENSE 47
Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
++ DG L ++ + + D G Y N+ G ++ EL V+
Sbjct: 48 KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 51.9 bits (125), Expect = 2e-08
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
G + ++ DG L ++ + + D G Y N+ G ++ EL V+
Sbjct: 39 GVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 48.5 bits (116), Expect = 3e-07
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 2 GIPTP-QLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
Q+ WY ++++ + + +T + L GTY C+ VN G
Sbjct: 27 NYDQSTQVTWYFGVRQLENSEKYEITYED-GVAILYVKDITKLDDGTYRCKVVNDYGEDS 85
Query: 51 STSRVIARGQQ 61
S + + +G +
Sbjct: 86 SYAELFVKGVR 96
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 80.2 bits (198), Expect = 3e-18
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 848 PKFLEELKAVLS-----EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGT 902
P + K V C G P PT++W K+G+E K +
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 903 CCL----------GIYTCEAHNCMGTTSSSAAL 925
L G YTC N G+ + + L
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
Score = 73.2 bits (180), Expect = 7e-16
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 648 NYRKPRFVESLKAVMTDDGL-----VSFECKVVGFPTPTLQWFKDNEELKPGDVYQ---- 698
N R P + + K + V F C G P PT++W K+ +E K
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 699 LTGTSSL----------GSYCCVAKNVMGKAESSTQLTI 727
SL G+Y CV +N G + L +
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 69.4 bits (170), Expect = 1e-14
Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 15/96 (15%)
Query: 446 KAPFFTKELEAILTEQ-----GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
+AP++T + TV C G P P + W K+ K+ K
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 501 DPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
SL G YTC N G+ T +
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 69.0 bits (169), Expect = 2e-14
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 745 NNKAPKFIEGLK----SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE 800
N +AP + K KF +P P + W ++ ++ + + K
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
L + ++ +D+ + C+ N++G + L
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 68.2 bits (167), Expect = 4e-14
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 349 APAFIR----RLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEEN-KIYRTQHDG 402
AP + AV + +P + W +N ++ ++ +I +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+ + + SV D G +TC+ EN G + + L V+
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 53.2 bits (128), Expect = 8e-09
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 550 APIFIKEVENVKAKI----GTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADG 604
AP + + K + C P P ++ W K G + +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWL-KNGKEFKQEHRIGGYKVR 61
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
+S+ + + D G + CV + G + ++ V+
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHT-YHLDVV 100
Score = 50.1 bits (120), Expect = 8e-08
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P + W K+ K+ K SL G YTC N G+
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 52 TSRVI 56
T +
Sbjct: 94 TYHLD 98
Score = 48.2 bits (115), Expect = 4e-07
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 17/107 (15%)
Query: 135 APAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
AP + AV + +P ++ + R G
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYK--- 59
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
R+ L + V D G Y+ NE G + L V
Sbjct: 60 -------VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 48.2 bits (115), Expect = 4e-07
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 17/107 (15%)
Query: 242 APAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 295
AP + AV + +P ++ + R G
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYK--- 59
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
R+ L + V D G Y+ NE G + L V
Sbjct: 60 -------VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 43.2 bits (102), Expect = 3e-05
Identities = 11/47 (23%), Positives = 15/47 (31%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
R+ L + V D G Y+ NE G + L V
Sbjct: 53 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 83.6 bits (206), Expect = 3e-18
Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 24/191 (12%)
Query: 558 ENVKAKIGTSAILECQVLVPP-----WPRSIYWYNKEGVVEASDKYHIMADGL--GGYSI 610
E +G+S LEC R+ + S++ ++ + L G
Sbjct: 10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALF 69
Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSF 670
I ++ D G+++C+ + Y+ V + +Y + ++ + G V
Sbjct: 70 HIPSVQVRDSGQYRCLVICGAAWDY---KYLTVKVKASYMRI---DTRILEVPGTGEVQL 123
Query: 671 ECKVVGFPTPTLQWFKDNEELK------PGDVYQLTGT-----SSLGSYCCVAKNVMGKA 719
C+ G+P + W + P +YQ+T ++ C+ N K
Sbjct: 124 TCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKE 183
Query: 720 ESSTQLTIEDI 730
+S +
Sbjct: 184 LTSAIIDPLSR 194
Score = 77.4 bits (190), Expect = 4e-16
Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 28/185 (15%)
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN------VKILKETL--GVCHLKIHA 811
V ++ R Q VE+D +L+E L G I +
Sbjct: 14 VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI 871
++V D +++C+ +K+ + LE + G V L C+
Sbjct: 74 VQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILE-----VPGTGEVQLTCQAR 128
Query: 872 GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMGTTS 920
G P + W I +G + ++C N
Sbjct: 129 GYPLAEVSWQNVSVPAN----TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL 184
Query: 921 SSAAL 925
+SA +
Sbjct: 185 TSAII 189
Score = 70.8 bits (173), Expect = 6e-14
Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 23/185 (12%)
Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY----RTQ------HDGNFYFID 408
V VG+ L + ++ R + EN R G F
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFH- 70
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLEC 468
+ SV + DSG++ CL + + K + + G V L C
Sbjct: 71 IPSVQVRDSGQYRCLVICGAAWDYKYLTV-----KVKASYMRIDTRILEVPGTGEVQLTC 125
Query: 469 KVMGIPTPQLIWYKDNKKIK------AGDIFALTANPK-DPSSLGTYTCEAVNCMGAAFS 521
+ G P ++ W + ++ +T+ + P ++C N +
Sbjct: 126 QARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185
Query: 522 TSRVI 526
++ +
Sbjct: 186 SAIID 190
Score = 59.3 bits (143), Expect = 6e-10
Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 29/210 (13%)
Query: 252 IAVKVGTRARLLVEIRSPTEIKCQF------DLNNTIPFSFRAQGDHPIFGNRFRAIN-- 303
V VG+ L +C F +L + + D + R +
Sbjct: 12 YTVDVGSSVSL----------ECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQ 61
Query: 304 -RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 362
G+ +I V+ D G+Y + + + V++ + V
Sbjct: 62 LPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-----TRILEVP 116
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
+L + R ++ W + + +G + + + S ++C
Sbjct: 117 GTGEVQLTCQARGYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSC 174
Query: 423 LAENAVGRSHCSCELSVLVPKAYKAPFFTK 452
+ NA + S +++ P + P +
Sbjct: 175 MFWNAHMKELTS---AIIDPLSRMEPKVPR 201
Score = 56.2 bits (135), Expect = 6e-09
Identities = 24/190 (12%), Positives = 46/190 (24%), Gaps = 46/190 (24%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQ------------LTGTSSL---------- 705
VS EC L+ + + + D G +
Sbjct: 20 VSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDS 79
Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
G Y C+ + ++ + + E
Sbjct: 80 GQYRCLVICGAAWDYKYLTVKVKASYMRIDTR-------------------ILEVPGTGE 120
Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIH-ALEVADQAEWKCIA 824
+ T Q P +VSW S ++ G+ + L+ + C+
Sbjct: 121 VQLTCQARGYPLAEVSWQNVSVPANTS----HIRTPEGLYQVTSVLRLKPQPSRNFSCMF 176
Query: 825 TNDFGQSITS 834
N + +TS
Sbjct: 177 WNAHMKELTS 186
Score = 42.3 bits (99), Expect = 3e-04
Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 28/183 (15%)
Query: 71 FNRAQGDHPIFGNRFRAIN---RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS 127
+ + D + R + G+ +I V+ D G+Y + + +
Sbjct: 41 LQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVK 100
Query: 128 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDH 185
V++ + V +L + R P E+ N ++P +
Sbjct: 101 VKASYMRID-----TRILEVPGTGEVQLTCQARGYPLAEVSW---QNVSVPANTSHI--- 149
Query: 186 PIFGNRFRAINRDGRTELNIR-RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
+G ++ R++ +S N + S++ P
Sbjct: 150 ---------RTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRME--PK 198
Query: 245 FIR 247
R
Sbjct: 199 VPR 201
Score = 42.0 bits (98), Expect = 4e-04
Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 44/222 (19%)
Query: 145 IAVKVGTRARLLVEIRSPTEIKCQF------DLNNTIPFSFRAQGDHPIFGNRFRAIN-- 196
V VG+ L +C F +L + + D + R +
Sbjct: 12 YTVDVGSSVSL----------ECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQ 61
Query: 197 -RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 255
G+ +I V+ D G+Y + + + V++ + V
Sbjct: 62 LPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-----TRILEVP 116
Query: 256 VGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIR 313
+L + R P E+ N ++P + +G ++
Sbjct: 117 GTGEVQLTCQARGYPLAEVSW---QNVSVPANTSHI------------RTPEGLYQVTSV 161
Query: 314 -RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 354
R++ +S N + S++ P R
Sbjct: 162 LRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRME--PKVPR 201
Score = 41.2 bits (96), Expect = 6e-04
Identities = 13/99 (13%), Positives = 22/99 (22%), Gaps = 28/99 (28%)
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-----------------------IHKII 896
G +V+LEC L+ + + D I +
Sbjct: 16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS-V 74
Query: 897 SGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE 935
D G Y C + +I+
Sbjct: 75 QVRDS----GQYRCLVICGAAWDYKYLTVKVKASYMRID 109
Score = 35.4 bits (81), Expect = 0.057
Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 2 GIPTPQLIWYKDNKKIK------AGDIFALTANPK-DPSSLGTYTCEAVNCMGAAFSTSR 54
G P ++ W + ++ +T+ + P ++C N +++
Sbjct: 129 GYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAI 188
Query: 55 VI 56
+
Sbjct: 189 ID 190
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 86.3 bits (213), Expect = 3e-18
Identities = 34/193 (17%), Positives = 57/193 (29%), Gaps = 26/193 (13%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
P + + V ++ QV + W + + + +LG
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG--LTL 216
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLEC 868
+ ++ C A ND G++ S + ++ P + E +
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTA--------VEMHHWCIPF 268
Query: 869 KVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC------CL----------GIYTCEA 912
V G P P+L+W +G L E CL G YT A
Sbjct: 269 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 328
Query: 913 HNCMGTTSSSAAL 925
N G S+S
Sbjct: 329 ANPFGQASASIMA 341
Score = 85.9 bits (212), Expect = 5e-18
Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 25/193 (12%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
P ++ + +V VG L ++ + W + + + +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-A 217
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK 469
+ S + TC AEN VGR+ S +++V P + + E +
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTA--------VEMHHWCIPFS 269
Query: 470 VMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------------GTYTCEAV 513
V G P P L W + + + G YT A
Sbjct: 270 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 514 NCMGAAFSTSRVI 526
N G A ++
Sbjct: 330 NPFGQASASIMAA 342
Score = 85.9 bits (212), Expect = 6e-18
Identities = 36/203 (17%), Positives = 57/203 (28%), Gaps = 36/203 (17%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLG 606
P +V N +G +L CQV W E + + GL
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATVMKSGGLPSLGL- 214
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
N ++ C A + G + S V+V P + + +
Sbjct: 215 ---TLANVTSDLNRKNVTCWAENDVGRAEVSV-QVNVSFPASVQLH--------TAVEMH 262
Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGD----------VYQLTGTSSL----------G 706
V G P P+L+W + L + L G
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322
Query: 707 SYCCVAKNVMGKAESSTQLTIED 729
+Y +A N G+A +S D
Sbjct: 323 NYTLLAANPFGQASASIMAAFMD 345
Score = 82.1 bits (202), Expect = 9e-17
Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 40/193 (20%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD------------VYQLTGTSSLGSYCCVAKNV 715
V C+V G W E + +T + + C A+N
Sbjct: 176 VLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235
Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS 775
+G+AE S Q+ F ++ A + V
Sbjct: 236 VGRAEVSVQVN----------------------VSFPASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 776 PEPKVSWFRDDQQVVESDNVKILKETLGVCH------LKIHALEVADQAEWKCIATNDFG 829
P P + W + + E+ + L+++ + + +A N FG
Sbjct: 274 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333
Query: 830 QSITSCFLKLNVP 842
Q+ S
Sbjct: 334 QASASIMAAFMDN 346
Score = 73.6 bits (180), Expect = 6e-14
Identities = 41/288 (14%), Positives = 72/288 (25%), Gaps = 59/288 (20%)
Query: 390 LEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC--------------LAENAVGRSHCSC 435
L N + + + L + L + C L + C
Sbjct: 87 LSFNAL-ESLSWKTVQGLSLQELVLSGN-PLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144
Query: 436 ELSVLVPKAYKA--PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA--- 489
+ + P ++ + G V L C+V G Q W + A
Sbjct: 145 QGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM 204
Query: 490 -----GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSL 544
+ AN + TC A N +G A + +V
Sbjct: 205 KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN------------------ 246
Query: 545 MPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG 604
F V+ A + V P P S+ W V+ +
Sbjct: 247 ------VSFPASVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLE 299
Query: 605 LGGY------SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
+ +N V++G + +A + G S +
Sbjct: 300 PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDN 346
Score = 72.1 bits (176), Expect = 2e-13
Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 15/159 (9%)
Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
+ ++ + + A N+ G + +++V
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV-------- 247
Query: 351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF---- 406
+F + + + + W N L E T+
Sbjct: 248 SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 307
Query: 407 ---IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ L+ + ++G +T LA N G++ S + +
Sbjct: 308 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 57.4 bits (138), Expect = 1e-08
Identities = 17/159 (10%), Positives = 43/159 (27%), Gaps = 11/159 (6%)
Query: 77 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
+ ++ + + A N+ G + +++V
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL 255
Query: 137 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 196
+H + + ++ F+ + SF
Sbjct: 256 HTAVEMHHWCIPFSVDGQ------PAPSLRWLFNGSVLNETSFIFT---EFLEPAANETV 306
Query: 197 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
R G L + + + G Y++ A+N G ++A +
Sbjct: 307 RHG--CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 57.4 bits (138), Expect = 1e-08
Identities = 17/159 (10%), Positives = 43/159 (27%), Gaps = 11/159 (6%)
Query: 184 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
+ ++ + + A N+ G + +++V
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL 255
Query: 244 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 303
+H + + ++ F+ + SF
Sbjct: 256 HTAVEMHHWCIPFSVDG------QPAPSLRWLFNGSVLNETSFIFT---EFLEPAANETV 306
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
R G L + + + G Y++ A+N G ++A +
Sbjct: 307 RHG--CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 56.3 bits (135), Expect = 2e-08
Identities = 24/160 (15%), Positives = 42/160 (26%), Gaps = 33/160 (20%)
Query: 2 GIPTPQLIWYKDNKKIKA--------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 53
G Q W + A + AN + TC A N +G A +
Sbjct: 184 GRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 243
Query: 54 RVIARGQQSFLDNDDVPFN------RAQG-----------DHPIFGNRFRAINRDGRTE- 95
+V S + V + G + F
Sbjct: 244 QVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 303
Query: 96 -------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
L + + + G Y++ A+N G ++A +
Sbjct: 304 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 79.7 bits (197), Expect = 4e-18
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
S ++ + D+ VK +A E+ ++ WY+N ++ +K H G
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDE-KVTGKWYKNGVEVRPSKRITISHVG 60
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
F+ + + V D G +T + + S +L+ L K
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIKVSG 102
Score = 77.0 bits (190), Expect = 4e-17
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
+ ++ + E+ F +VS + W+++ +V S + I L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVS-DEKVTGKWYKNGVEVRPSKRITISHVG-RFHKL 65
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
I + D+ ++ + S KLN
Sbjct: 66 VIDDVRPEDEGDYTFVPDG----YALSLSAKLNF 95
Score = 69.7 bits (171), Expect = 1e-14
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
+ + L+++ + + +C+V + T KW+K+G E++ I L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-VGRFHKL 65
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
G YT S SA L
Sbjct: 66 VIDDVRPEDEGDYTFVPDG--YALSLSAKL 93
Score = 61.2 bits (149), Expect = 1e-11
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
+ ++ + + F+C+V T +W+K+ E++P ++ L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIR 731
G Y V S +L +I+
Sbjct: 67 IDDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIK 99
Score = 60.9 bits (148), Expect = 2e-11
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
++++ ++ K A+ +C+V WY K GV V S + I G +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT--GKWY-KNGVEVRPSKRITISHVG-RFH 63
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
+ I+ + D+G++ V + +A ++ L K
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYAL---SLSAKLNFLEIK 99
Score = 53.9 bits (130), Expect = 5e-09
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 17/118 (14%)
Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPI 187
S ++ + D+ VK +A E+ K + +
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKN-------------GVEV 48
Query: 188 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
R + +L I VR +D G Y+ + +AK L+ P+
Sbjct: 49 RPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK--LNFLEIKVSGPS 104
Score = 53.9 bits (130), Expect = 5e-09
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 17/118 (14%)
Query: 236 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPI 294
S ++ + D+ VK +A E+ K + +
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKN-------------GVEV 48
Query: 295 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
R + +L I VR +D G Y+ + +AK L+ P+
Sbjct: 49 RPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK--LNFLEIKVSGPS 104
Score = 50.8 bits (122), Expect = 5e-08
Identities = 9/95 (9%), Positives = 26/95 (27%), Gaps = 13/95 (13%)
Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
+ +++ + + +C+V WYK+ +++ ++
Sbjct: 4 GSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV-GR 61
Query: 502 PSSL----------GTYTCEAVNCMGAAFSTSRVI 526
L G YT + + +
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
Score = 40.8 bits (96), Expect = 2e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
+ R + +L I VR +D G Y+ + +AK L+
Sbjct: 44 NGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK--LNFLEIKVS 101
Query: 135 APA 137
P+
Sbjct: 102 GPS 104
Score = 36.2 bits (84), Expect = 0.008
Identities = 7/63 (11%), Positives = 16/63 (25%), Gaps = 11/63 (17%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 53
WYK+ +++ ++ L G YT + +
Sbjct: 35 EKVTGKWYKNGVEVRPSKRITISHV-GRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKL 93
Query: 54 RVI 56
+
Sbjct: 94 NFL 96
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 79.7 bits (197), Expect = 5e-18
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
F + L G A L E+ ++ W + L + Y + DG +
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELSKVAPVE--WKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE 455
+ +S+ D+G ++C+ G+ S L+V FT+
Sbjct: 66 IHDLSVADAGEYSCMC----GQERTSATLTVRAL----PARFTEGSG 104
Score = 74.7 bits (184), Expect = 3e-16
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
+F + LK+ +A+ ++S V W + + + + + ++ C
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQD-GTRCE 63
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK 855
L+IH L VAD E+ C+ GQ TS L + +F E
Sbjct: 64 LQIHDLSVADAGEYSCMC----GQERTSATLTVRAL----PARFTEGSG 104
Score = 67.0 bits (164), Expect = 2e-13
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
+F ++LK SEG L+C++ ++W K L+ G + + + C L
Sbjct: 9 ARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQ-DGTRCELQ 65
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
G Y+C G +SA L
Sbjct: 66 IHDLSVADAGEYSCMC----GQERTSATL 90
Score = 63.2 bits (154), Expect = 3e-12
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
F ++++ +A G +A L+C++ + W K + +Y + DG
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELSKVA---PVEWK-KGPETLRDGGRYSLKQDG-TR 61
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK 659
++I+ L D GE+ C+ ++A + V RF E
Sbjct: 62 CELQIHDLSVADAGEYSCMCGQER-----TSATLTVRAL----PARFTEGSG 104
Score = 61.2 bits (149), Expect = 1e-11
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
RF + LK +G + +C++ ++W K E L+ G Y L L
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
G Y C+ G+ +S LT+
Sbjct: 67 HDLSVADAGEYSCMC----GQERTSATLTVRA 94
Score = 55.5 bits (134), Expect = 2e-09
Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 193
F + L G A L E+ ++ + + G R+
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELSKVAPVEWKKG-------------PETLRDGGRYS 54
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
R EL I + D G YS E ++A L+V F
Sbjct: 55 LKQDGTRCELQIHDLSVADAGEYSCMCGQER--TSA--TLTVR---ALPARFTEGSGP 105
Score = 55.5 bits (134), Expect = 2e-09
Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
F + L G A L E+ ++ + + G R+
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELSKVAPVEWKKG-------------PETLRDGGRYS 54
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
R EL I + D G YS E ++A L+V F
Sbjct: 55 LKQDGTRCELQIHDLSVADAGEYSCMCGQER--TSA--TLTVR---ALPARFTEGSGP 105
Score = 51.6 bits (124), Expect = 3e-08
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK---- 500
FT++L+ +G T +L+C++ + W K + ++ G ++L +
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 501 -----DPSSLGTYTCEAVNCMGAA 519
+ G Y+C +A
Sbjct: 65 QIHDLSVADAGEYSCMCGQERTSA 88
Score = 39.3 bits (92), Expect = 7e-04
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
G + G R+ R EL I + D G YS E ++A L+V
Sbjct: 43 GPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQER--TSA--TLTVR---AL 95
Query: 135 APAFIRRLHD 144
F
Sbjct: 96 PARFTEGSGP 105
Score = 35.8 bits (83), Expect = 0.013
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 9/55 (16%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLGTYTCEAVNCMGAA 49
+ W K + ++ G ++L + + G Y+C +A
Sbjct: 34 KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSA 88
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 78.1 bits (193), Expect = 1e-17
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
KPK L + + + G NLE IG P PT W + + + T +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA-KSSTTSI 60
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
G Y + N +G + +
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
Score = 73.5 bits (181), Expect = 5e-16
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
KP+ + + + + G + E +G P PT W + + T+S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
G+Y KN +G+ E+ ++ ++
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 73.1 bits (180), Expect = 6e-16
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
PK + + + V +P+P +W D + + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV-DAKSSTTSI 60
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLK 838
+ + AD +K N+ G+ +
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 72.0 bits (177), Expect = 2e-15
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 2/92 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
P + I +K G L V+ +P W D + I
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPD-PTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
S DSG + +N +G E+ V
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 67.3 bits (165), Expect = 6e-14
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
P + I +K G L V+ +P D
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-------------DSGAALAPE 48
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
+ T + +R D G Y + NE G A FE+ V+
Sbjct: 49 LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 67.3 bits (165), Expect = 6e-14
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 298
P + I +K G L V+ +P D
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-------------DSGAALAPE 48
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
+ T + +R D G Y + NE G A FE+ V+
Sbjct: 49 LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 65.0 bits (159), Expect = 5e-13
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
P I + G T +LE +G P P W + + A +S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST-TSI 60
Query: 506 ----------GTYTCEAVNCMGAAFSTSRVI 526
G Y + N +G + VI
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 56.2 bits (136), Expect = 6e-10
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
GD + T + +R D G Y + NE G A FE+ V+
Sbjct: 39 GDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 53.5 bits (129), Expect = 5e-09
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
P + +K K G + LE + P P W + + + + A S
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPT-ATWTVGDSGAALAPELLVDAKS-STTS 59
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
I + D G +K + G +
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIF 88
Score = 45.8 bits (109), Expect = 2e-06
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P P W + + A +S+ G Y + N +G +
Sbjct: 28 GAPDPTATWTVGDSGAALAPELLVDAKSST-TSIFFPSAKRADSGNYKLKVKNELGEDEA 86
Query: 52 TSRVI 56
VI
Sbjct: 87 IFEVI 91
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 78.9 bits (195), Expect = 1e-17
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
+S SG ++A L+V + F L + G A L E+ ++ W++
Sbjct: 2 SSGSSGRTSA--MLTVRAL---PIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKG 54
Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
L + + + DG + + + D+G + C+ G+ S L+V
Sbjct: 55 HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106
Score = 72.4 bits (178), Expect = 2e-15
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
+S LT+ + KF EGL++ +AT ++S
Sbjct: 5 SSGRTSAMLTVRAL-----------------PIKFTEGLRNEEATEGATAVLRCELS--K 45
Query: 777 EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836
V W++ + + + D + ++ C L+I L D E+ C+ G+ TS
Sbjct: 46 MAPVEWWKGHETLRDGDRHSLRQDG-ARCELQIRGLVAEDAGEYLCMC----GKERTSAM 100
Query: 837 LKLNVP 842
L +
Sbjct: 101 LTVRAM 106
Score = 67.4 bits (165), Expect = 1e-13
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 22/111 (19%)
Query: 826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDG 884
+ TS L + KF E L+ +EG L C++ ++W+K
Sbjct: 2 SSGSSGRTSAMLTVRALP----IKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGH 55
Query: 885 RELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
L+ GD H + + C L G Y C G +SA L
Sbjct: 56 ETLRDGDRHSLRQ-DGARCELQIRGLVAEDAGEYLCMC----GKERTSAML 101
Score = 62.4 bits (152), Expect = 6e-12
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 26/117 (22%)
Query: 627 ATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWF 685
+S S + ++A + V +F E L+ +G C++ W+
Sbjct: 1 GSSGSSGR--TSAMLTVRALP----IKFTEGLRNEEATEGATAVLRCELSKMAPVE--WW 52
Query: 686 KDNEELKPGDVYQLT---GTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
K +E L+ GD + L L G Y C+ GK +S LT+
Sbjct: 53 KGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA 105
Score = 61.2 bits (149), Expect = 2e-11
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 426 NAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDN 484
++ S L+V FT+ L +G T L C++ + + W+K +
Sbjct: 2 SSGSSGRTSAMLTVRAL----PIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKGH 55
Query: 485 KKIKAGDIFALTANPKD---------PSSLGTYTCEAVNCMGAAFSTSRVI 526
+ ++ GD +L + G Y C G +++ +
Sbjct: 56 ETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLT 102
Score = 57.0 bits (138), Expect = 5e-10
Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 24/132 (18%)
Query: 113 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN 172
+S SG ++A L+V + F L + G A L E+ ++
Sbjct: 2 SSGSSGRTSA--MLTVRAL---PIKFTEGLRNEEATEGATAVLRCELSKMAPVEWWKG-- 54
Query: 173 NTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF 231
+ G+R R EL IR + +D G Y E ++A
Sbjct: 55 -----------HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKER--TSA-- 99
Query: 232 ELSVESQVPDAP 243
L+V + P P
Sbjct: 100 MLTVRAM-PSGP 110
Score = 57.0 bits (138), Expect = 5e-10
Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 24/132 (18%)
Query: 220 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN 279
+S SG ++A L+V + F L + G A L E+ ++
Sbjct: 2 SSGSSGRTSA--MLTVRAL---PIKFTEGLRNEEATEGATAVLRCELSKMAPVEWWKG-- 54
Query: 280 NTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF 338
+ G+R R EL IR + +D G Y E ++A
Sbjct: 55 -----------HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKER--TSA-- 99
Query: 339 ELSVESQVPDAP 350
L+V + P P
Sbjct: 100 MLTVRAM-PSGP 110
Score = 56.6 bits (137), Expect = 7e-10
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
F + + N +A G +A+L C++ + W+ + D++ + DG
Sbjct: 17 ALPIKFTEGLRNEEATEGATAVLRCELSKMA---PVEWWKGHETLRDGDRHSLRQDG-AR 72
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
++I L A D GE+ C+ ++A + V
Sbjct: 73 CELQIRGLVAEDAGEYLCMCGKER-----TSAMLTVRAM 106
Score = 36.2 bits (84), Expect = 0.011
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
G + G+R R EL IR + +D G Y E ++A L+V + P
Sbjct: 54 GHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKER--TSA--MLTVRAM-PS 108
Query: 135 AP 136
P
Sbjct: 109 GP 110
Score = 35.0 bits (81), Expect = 0.026
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKD---------PSSLGTYTCEAVNCMGAAFSTSR 54
+ W+K ++ ++ GD +L + G Y C G +++
Sbjct: 45 KMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAM 100
Query: 55 VI 56
+
Sbjct: 101 LT 102
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 80.8 bits (199), Expect = 1e-17
Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 39/192 (20%)
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD----------------NVKILKETLG 803
+ + T S + W +Q + + + + G
Sbjct: 7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGA 863
L I L++ D + C + + +L V L +G +
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEEV------QLLVFGLTANSD------THLLQGQS 114
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGD----IHKIISGEDGTCCLGIYTCEAHNCMGTT 919
+ L + P+++ + G + + + +D G +TC
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQ-LELQDS----GTWTCTVLQNQKKV 169
Query: 920 SSSAAL--LGFE 929
+ L F+
Sbjct: 170 EFKIDIVVLAFQ 181
Score = 80.8 bits (199), Expect = 1e-17
Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 37/194 (19%)
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL-------- 605
+K+V V K G + L C + +W N + ++ + G
Sbjct: 1 MKKV--VLGKKGDTVELTCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 57
Query: 606 --------GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
G + + I L+ D + C Q + + +
Sbjct: 58 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ------ 111
Query: 658 LKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTSSLGSYCCVAK 713
++ + +P++Q + G V QL S G++ C
Sbjct: 112 -------GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDS-GTWTCTVL 163
Query: 714 NVMGKAESSTQLTI 727
K E + +
Sbjct: 164 QNQKKVEFKIDIVV 177
Score = 66.9 bits (163), Expect = 8e-13
Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 30/185 (16%)
Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL-----------------EENKIYRTQHD 401
+ K G L I+ HW +++ + R+ D
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
+ + + ++ + DS + C E+ + L +
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS------------DTHLLQG 112
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
+++L + +P + K G L+ + + GT+TC +
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRGKNIQGGK-TLSVSQLELQDSGTWTCTVLQNQKKVEF 171
Query: 522 TSRVI 526
++
Sbjct: 172 KIDIV 176
Score = 65.0 bits (158), Expect = 5e-12
Identities = 20/182 (10%), Positives = 42/182 (23%), Gaps = 29/182 (15%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTI 727
V C + W N+ G+ + + L I
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72
Query: 728 EDIR-----------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
++++ EE +LL+ + T++
Sbjct: 73 KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS-------DTHLLQGQSLTLTLESPPGS 125
Query: 777 EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836
P V + ++ L + LE+ D W C + +
Sbjct: 126 SPSVQCRSPRGKNIQGGKT-----------LSVSQLELQDSGTWTCTVLQNQKKVEFKID 174
Query: 837 LK 838
+
Sbjct: 175 IV 176
Score = 62.3 bits (151), Expect = 4e-11
Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 24/137 (17%)
Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKV 363
G L I+ ++ +D Y ++ F L+ S D +
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS-------------DTHLLQ 111
Query: 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
G L +E + + K + +S + L DSG WTC
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSPRGKNIQG-------GKTLS---VSQLELQDSGTWTCT 161
Query: 424 AENAVGRSHCSCELSVL 440
+ ++ VL
Sbjct: 162 VLQNQKKVEFKIDIVVL 178
Score = 52.3 bits (125), Expect = 1e-07
Identities = 24/178 (13%), Positives = 49/178 (27%), Gaps = 34/178 (19%)
Query: 59 GQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 118
Q L N + + R++ G L I+ ++ +D Y ++
Sbjct: 33 NQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE 92
Query: 119 -YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 177
F L+ S D + G L + ++
Sbjct: 93 EVQLLVFGLTANS-------------DTHLLQGQSLTL----------TLESPPGSSPSV 129
Query: 178 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
R+ I G + L++ ++ D G ++ T K ++ V
Sbjct: 130 QCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 51.1 bits (122), Expect = 2e-07
Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 34/146 (23%)
Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKV 256
G L I+ ++ +D Y ++ F L+ S D +
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS-------------DTHLLQ 111
Query: 257 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR 316
G L + ++ R+ I G + L++ ++
Sbjct: 112 GQSLTL----------TLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLE 151
Query: 317 RDDGGRYSVTASNESGYSTAKFELSV 342
D G ++ T K ++ V
Sbjct: 152 LQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 48.1 bits (114), Expect = 3e-06
Identities = 24/157 (15%), Positives = 38/157 (24%), Gaps = 30/157 (19%)
Query: 2 GIPTPQLIWYKDN-KKIKAGDIFALTANPKDPSSL------------------------- 35
+ Q W N KI LT P +
Sbjct: 21 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 80
Query: 36 GTYTCEAVNCMGAA-FSTSRVIARGQQSFLDNDDVPFN-RAQGD-HPIFG-NRFRAINRD 91
TY CE + + A L + + P R N
Sbjct: 81 DTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ 140
Query: 92 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
G L++ ++ D G ++ T K ++ V
Sbjct: 141 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 80.4 bits (198), Expect = 1e-17
Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 18/167 (10%)
Query: 357 HDIAVKVGTRARLLV-EIRSPTEIK-IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL 414
+ +G L + + +I + W R + E K + F L++ L
Sbjct: 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDL 63
Query: 415 F-------DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
DSG + + G + L + + + P I E +L
Sbjct: 64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM-------IYWECSNATLT 116
Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
C+V+ +L Y+ + +++ ++ + + C+AVN
Sbjct: 117 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 161
Score = 78.8 bits (194), Expect = 6e-17
Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 25/185 (13%)
Query: 555 KEVENVKAKIGTSAILECQVLVPPWP-RSIYWY----------NKEGVVEASDKYHIMAD 603
++ V +G L + W K S + I+A+
Sbjct: 1 RDSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60
Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
G ++I L D G + S++G + + + + + KP +
Sbjct: 61 G----DLKIKNLTRDDSGTYNVTVYSTNG-TRILNKALDLRILEMVSKPM-------IYW 108
Query: 664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
+ + C+V+ L+ ++ E L+ ++ + + C A N + +
Sbjct: 109 ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 168
Query: 722 STQLT 726
+
Sbjct: 169 MEVVN 173
Score = 76.5 bits (188), Expect = 4e-16
Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 760 ATVNEEFKFTVQVSISPEPK--VSWFRDDQQVVESDNVKILKETLGVCH------LKIHA 811
+ + + V W R V E G LKI
Sbjct: 8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67
Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI 871
L D + + G I + L L + + KP + E L C+V+
Sbjct: 68 LTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM-------IYWECSNATLTCEVL 120
Query: 872 GVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
LK ++ L++ + + + C+A N + S +
Sbjct: 121 EGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR---APFKCKAVNRVSQESEMEVV 172
Score = 59.2 bits (143), Expect = 3e-10
Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 26/155 (16%)
Query: 295 FGNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
F + + + G E L I+ + RDD G Y+VT + +G L +
Sbjct: 42 FKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV 101
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
+ I + A L E+ T++++ Y+ L +
Sbjct: 102 SKPMI-------YWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KT 143
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
+S + C A N V + S V P+
Sbjct: 144 MSYQWTNLRAPFKCKAVNRVSQE--SEMEVVNCPE 176
Score = 45.3 bits (107), Expect = 2e-05
Identities = 19/204 (9%), Positives = 51/204 (25%), Gaps = 55/204 (26%)
Query: 660 AVMTDDGLVSFECKVVGFPTPTLQWFKDNEEL----------KPGDVYQLTGTSSL---- 705
+ ++ + ++W + + + +++ L
Sbjct: 8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67
Query: 706 ------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
G+Y + G + L + + K + +
Sbjct: 68 LTRDDSGTYNVTVYSTNGTRILNKALDLRIL---------------EMVSKPMIYWECSN 112
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
AT T +V + ++ ++ + + + +A
Sbjct: 113 AT------LTCEVLEGTDVELKLYQGKEHLRSLRQ------------KTMSYQWTNLRAP 154
Query: 820 WKCIATNDFGQSITSCFLKLNVPK 843
+KC A N Q +N P+
Sbjct: 155 FKCKAVNRVSQESEM--EVVNCPE 176
Score = 42.6 bits (100), Expect = 2e-04
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 34/161 (21%)
Query: 81 FGNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
F + + + G E L I+ + RDD G Y+VT + +G L +
Sbjct: 42 FKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV 101
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
+ I + A L E+ T+++ + S
Sbjct: 102 SKPMI-------YWECSNATLTCEVLEGTDVELKLYQGKEHLRS---------------- 138
Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+ + + + A N + ++
Sbjct: 139 -----LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 42.6 bits (100), Expect = 2e-04
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 34/161 (21%)
Query: 188 FGNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
F + + + G E L I+ + RDD G Y+VT + +G L +
Sbjct: 42 FKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV 101
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
+ I + A L E+ T+++ + S
Sbjct: 102 SKPMI-------YWECSNATLTCEVLEGTDVELKLYQGKEHLRS---------------- 138
Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+ + + + A N + ++
Sbjct: 139 -----LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 40.7 bits (95), Expect = 8e-04
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 44
+L Y+ + +++ ++ + + C+AVN
Sbjct: 121 EGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 161
Score = 36.1 bits (83), Expect = 0.029
Identities = 18/166 (10%), Positives = 42/166 (25%), Gaps = 40/166 (24%)
Query: 451 TKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKI----KAGDIFALTANPKDPS--S 504
+ + L +++ M ++ W + + + + F + + +
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
L GTY + G + R P+
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL---------------EMVSKPMIY 107
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHI 600
E N L C+VL + Y + + + + +
Sbjct: 108 WECSNA--------TLTCEVLEGT-DVELKLYQGKEHLRSLRQKTM 144
Score = 31.9 bits (72), Expect = 0.62
Identities = 12/156 (7%), Positives = 35/156 (22%), Gaps = 32/156 (20%)
Query: 1 MGIPTPQLIWYKDNKKI----KAGDIFALTANPKDPS--SL----------GTYTCEAVN 44
M ++ W + + + + F + + + L GTY +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 45 CMGAAFSTSRVIARGQ------QSFLDNDDVPFN-RAQGDHPI-----FGNRFRAINRDG 92
G + R + + + + G +
Sbjct: 83 TNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGK--EHLRSLR 140
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
+ + + + A N + ++
Sbjct: 141 Q--KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 77.4 bits (191), Expect = 3e-17
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
K + L + +E ++S W ++ V ESD +K++++ +
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEIS--ENIPGKWTKNGLPVQESDRLKVVQKG-RIHK 62
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
L I D+ ++ + +
Sbjct: 63 LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96
Score = 75.1 bits (185), Expect = 2e-16
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
+ L D V +G L EI K W +N ++E+ + G + +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLV 64
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+++ D G + + ++ V+
Sbjct: 65 IANALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96
Score = 63.1 bits (154), Expect = 2e-12
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 16/91 (17%)
Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
K L L ++ G + L+C++ KW K+G ++ D K++ +
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQ-KGRIHK 62
Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
L G Y + A +
Sbjct: 63 LVIANALTEDEGDYVFAPDA--YNVTLPAKV 91
Score = 60.4 bits (147), Expect = 2e-11
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
+ + + +G L+C++ + W K G+ V+ SD+ ++ G +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK---WT-KNGLPVQESDRLKVVQKG-RIH 61
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
+ I D+G++ + + A VHV+
Sbjct: 62 KLVIANALTEDEGDYVFAPDAYNV---TLPAKVHVISG 96
Score = 57.7 bits (140), Expect = 2e-10
Identities = 9/92 (9%), Positives = 24/92 (26%), Gaps = 18/92 (19%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
+ + L + G + +C++ W K+ ++ D ++ L
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVI 65
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
G Y ++ +
Sbjct: 66 ANALTEDEGDYVFAPDA--YNVTLPAKVHVIS 95
Score = 49.6 bits (119), Expect = 1e-07
Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 16/92 (17%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
L G + L+C++ + W K+ ++ D +
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQK-GRIHK 62
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVI 526
L G Y ++V
Sbjct: 63 LVIANALTEDEGDYVFAPDA--YNVTLPAKVH 92
Score = 49.3 bits (118), Expect = 2e-07
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 193
+ L D V +G L EI K + P+ +R +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKN-------------GLPVQESDRLK 53
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+ + +L I +D G Y + AK + V S
Sbjct: 54 VVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAK--VHVIS 95
Score = 49.3 bits (118), Expect = 2e-07
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
+ L D V +G L EI K + P+ +R +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKN-------------GLPVQESDRLK 53
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+ + +L I +D G Y + AK + V S
Sbjct: 54 VVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAK--VHVIS 95
Score = 37.7 bits (88), Expect = 0.002
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
P+ +R + + + +L I +D G Y + AK + V S
Sbjct: 42 NGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAK--VHVIS 95
Score = 31.5 bits (72), Expect = 0.27
Identities = 7/63 (11%), Positives = 13/63 (20%), Gaps = 13/63 (20%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 53
W K+ ++ D + L G Y +
Sbjct: 33 ENIPGKWTKNGLPVQESDRLKVVQK-GRIHKLVIANALTEDEGDYVFAPDA--YNVTLPA 89
Query: 54 RVI 56
+V
Sbjct: 90 KVH 92
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 77.0 bits (190), Expect = 3e-17
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
A I+ L D V G L E+ +HW ++ + + +++ Y +G + +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
SL D+G +TC E S + L V +
Sbjct: 68 RGASLKDAGEYTCEVEA----SKSTASLHVEEKAS 98
Score = 70.4 bits (173), Expect = 8e-15
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
I+ L+ E+ + ++S + P V W +D + + +S ++ E + L
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEG-TMAMLV 66
Query: 809 IHALEVADQAEWKCIATNDFG 829
I + D E+ C
Sbjct: 67 IRGASLKDAGEYTCEVEASKS 87
Score = 67.3 bits (165), Expect = 9e-14
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
++ L+ ++ G V L C++ P + W KD + ++ + ++ E L
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-EGTMAMLV 66
Query: 906 ---------GIYTCEAHNCMGT 918
G YTCE T
Sbjct: 67 IRGASLKDAGEYTCEVEASKST 88
Score = 61.9 bits (151), Expect = 7e-12
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 652 PRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
++ L+ G V C++ TP + W KD + ++ Y + + L
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
G Y C + A L +E+
Sbjct: 68 RGASLKDAGEYTCEVEASKSTAS----LHVEE 95
Score = 60.8 bits (148), Expect = 2e-11
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
IK +E+ G L C++ P ++W K+ + S KY ++ +G
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP--VHWL-KDRKAIRKSQKYDVVCEG-TM 62
Query: 608 YSIEINYLEAVDDGEWKCVATSSSG 632
+ I D GE+ C +S
Sbjct: 63 AMLVIRGASLKDAGEYTCEVEASKS 87
Score = 57.7 bits (140), Expect = 2e-10
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL- 505
K LE G V L C++ TP + W KD K I+ + + + L
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE-GTMAMLV 66
Query: 506 ---------GTYTCEAVNCMGAA 519
G YTCE A
Sbjct: 67 IRGASLKDAGEYTCEVEASKSTA 89
Score = 55.4 bits (134), Expect = 1e-09
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 20/110 (18%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 193
A I+ L D V G L E+ + T + D I ++
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKD-------------RKAIRKSQKYD 55
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
+ L IR D G Y+ L VE + P
Sbjct: 56 VVCEGTMAMLVIRGASLKDAGEYTCEVEASKS----TASLHVEEK-ASGP 100
Score = 55.4 bits (134), Expect = 1e-09
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 20/110 (18%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
A I+ L D V G L E+ + T + D I ++
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKD-------------RKAIRKSQKYD 55
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
+ L IR D G Y+ L VE + P
Sbjct: 56 VVCEGTMAMLVIRGASLKDAGEYTCEVEASKS----TASLHVEEK-ASGP 100
Score = 41.5 bits (98), Expect = 1e-04
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
I ++ + L IR D G Y+ L VE +
Sbjct: 44 DRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKS----TASLHVEEK-AS 98
Query: 135 AP 136
P
Sbjct: 99 GP 100
Score = 36.5 bits (85), Expect = 0.006
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAA 49
TP + W KD K I+ + + + L G YTCE A
Sbjct: 34 RAGTP-VHWLKDRKAIRKSQKYDVVCE-GTMAMLVIRGASLKDAGEYTCEVEASKSTA 89
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 75.9 bits (187), Expect = 9e-17
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 349 APAFIRRLHDI-AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
AF + L V G R R +VE+ P ++++ WY+N +++ + Y +H G +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADP-KLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
+++ + D + A + CS EL V +
Sbjct: 66 FINNCQMTDDSEYYVTAGDE----KCSTELFVRSGPS 98
Score = 69.3 bits (170), Expect = 2e-14
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 748 APKFIEGLKSC-QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
F + L Q +F V+++ P+ +V W+++ Q++ S +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKG-CQRI 64
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
L I+ ++ D +E+ A G S L +
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGP 97
Score = 65.5 bits (160), Expect = 4e-13
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 847 KPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
F + L +GG V ++ P+ +KW+K+G+E++ + +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-KGCQRI 64
Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
L Y A G S L
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTEL 91
Score = 59.7 bits (145), Expect = 4e-11
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 20/94 (21%)
Query: 651 KPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
F + L G V F ++ P ++W+K+ +E++P Y L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIED 729
Y A G + ST+L +
Sbjct: 66 FINNCQMTDDSEYYVTA----GDEKCSTELFVRS 95
Score = 55.9 bits (135), Expect = 9e-10
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 549 PAPIFIKEVE-NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
F K ++ + G ++ P + WY K G + S KY G
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVELADPK-L-EVKWY-KNGQEIRPSTKYIFEHKG-C 61
Query: 607 GYSIEINYLEAVDDGEWKCVATSSS 631
+ IN + DD E+ A
Sbjct: 62 QRILFINNCQMTDDSEYYVTAGDEK 86
Score = 51.6 bits (124), Expect = 3e-08
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 18/92 (19%)
Query: 447 APFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
F K L+ + G V ++ P ++ WYK+ ++I+ +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHK-GCQRI 64
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVI 526
L Y A G ++ +
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELF 92
Score = 47.0 bits (112), Expect = 1e-06
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 135 APAFIRRLHDI-AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
AF + L V G R R +VE+ P E+K + I +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKN-------------GQEIRPSTK 53
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+ ++ + L I + D Y VTA +E EL V S
Sbjct: 54 YIFEHKGCQRILFINNCQMTDDSEYYVTAGDEK----CSTELFVRS 95
Score = 47.0 bits (112), Expect = 1e-06
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 242 APAFIRRLHDI-AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 298
AF + L V G R R +VE+ P E+K + I +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKN-------------GQEIRPSTK 53
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+ ++ + L I + D Y VTA +E EL V S
Sbjct: 54 YIFEHKGCQRILFINNCQMTDDSEYYVTAGDEK----CSTELFVRS 95
Score = 36.6 bits (85), Expect = 0.006
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
++ ++ + L I + D Y VTA +E EL V S
Sbjct: 51 STKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEK----CSTELFVRS 95
Score = 35.1 bits (81), Expect = 0.016
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 15/65 (23%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
P ++ WYK+ ++I+ + L Y A G
Sbjct: 33 ADPKLEVKWYKNGQEIRPSTKYIFEHK-GCQRILFINNCQMTDDSEYYVTA----GDEKC 87
Query: 52 TSRVI 56
++ +
Sbjct: 88 STELF 92
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 75.4 bits (186), Expect = 1e-16
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
A F L ++ V+ A + P + W + +L + ++ +G +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTEHP-AATVTWRKGLLELRASGKHQPSQEGLTLRLT 66
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+S++ DS +TC G++ +L V
Sbjct: 67 ISALEKADSDTYTCDI----GQAQSRAQLLV 93
Score = 75.4 bits (186), Expect = 1e-16
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
A F E L + Q FT + P V+W + ++ S + +E
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEG-LTLR 64
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFL 837
L I ALE AD + C GQ+ + L
Sbjct: 65 LTISALEKADSDTYTCDI----GQAQSRAQL 91
Score = 72.0 bits (177), Expect = 2e-15
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
F EEL + + E G CK P T+ W K EL+A H+ E T L
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ-EGLTLRLT 66
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
YTC+ G S A L
Sbjct: 67 ISALEKADSDTYTCDI----GQAQSRAQL 91
Score = 62.7 bits (153), Expect = 4e-12
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
F E L + ++ F CK P T+ W K EL+ +Q + T L
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIEDIRNHLS 735
+Y C G+A+S QL ++ R+ S
Sbjct: 68 SALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101
Score = 59.3 bits (144), Expect = 7e-11
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
A F +E+ N++ + +A+ C+ P ++ W K + + AS K+ +G
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTEHPA-A-TVTWR-KGLLELRASGKHQPSQEG-LTL 63
Query: 609 SIEINYLEAVDDGEWKCVATSSS 631
+ I+ LE D + C +
Sbjct: 64 RLTISALEKADSDTYTCDIGQAQ 86
Score = 57.3 bits (139), Expect = 3e-10
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 446 KAPFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
A FT+EL + + E+GT CK P + W K +++A +
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE-GLTLR 64
Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQQS 532
L TYTC+ G A S ++++ +G++S
Sbjct: 65 LTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
Score = 55.4 bits (134), Expect = 1e-09
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 20/111 (18%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 192
A F L ++ V+ A + P + + + +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKG-------------LLELRASGKH 54
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
+ L I + + D Y+ G + ++ +L V+ + P
Sbjct: 55 QPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGR-RSGP 100
Score = 55.4 bits (134), Expect = 1e-09
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 20/111 (18%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 299
A F L ++ V+ A + P + + + +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKG-------------LLELRASGKH 54
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
+ L I + + D Y+ G + ++ +L V+ + P
Sbjct: 55 QPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGR-RSGP 100
Score = 38.9 bits (91), Expect = 8e-04
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
G + + + L I + + D Y+ G + ++ +L V+ +
Sbjct: 44 GLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGR-RS 98
Query: 135 AP 136
P
Sbjct: 99 GP 100
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 53
P + W K +++A + L TYTC+ G A S +
Sbjct: 35 PAATVTWRKGLLELRASGKHQPSQE-GLTLRLTISALEKADSDTYTCDI----GQAQSRA 89
Query: 54 RVIARGQQS 62
+++ +G++S
Sbjct: 90 QLLVQGRRS 98
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 78.1 bits (192), Expect = 1e-16
Identities = 34/194 (17%), Positives = 52/194 (26%), Gaps = 40/194 (20%)
Query: 557 VENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYL 615
V +G+ +L C + W K GVV + D L G E
Sbjct: 5 VFTTVEDLGSKILLTCSLNDSATEVTGHRWL-KGGVV-------LKEDALPGQKTEFKVD 56
Query: 616 EAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL-VSFECKV 674
GE+ CV A + + P PR + ++G CK
Sbjct: 57 SDDQWGEYSCVFLPEPMGT----ANIQLHGP-----PRVKAVKSSEHINEGETAMLVCKS 107
Query: 675 VGFP-TPTLQWFKDNEELKPGDVYQLTG---------TSSL-----------GSYCCVAK 713
P W+K + + S L G Y C
Sbjct: 108 ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGT 167
Query: 714 NVMGKAESSTQLTI 727
+ G ++ L +
Sbjct: 168 SSKGSDQAIITLRV 181
Score = 77.4 bits (190), Expect = 2e-16
Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 35/185 (18%)
Query: 361 VKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG 418
+G++ L + + W + L+E+ + + + S G
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------TEFKVDSDDQWG 62
Query: 419 RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIP-TP 476
++C+ + + + P P + +G T L CK +P
Sbjct: 63 EYSCVFLPEPMGTA---NIQLHGP-----PRVKAVKSSEHINEGETAMLVCKSESVPPVT 114
Query: 477 QLIWYKDNKKIKAGDIFALT-----ANPKDPSSL-----------GTYTCEAVNCMGAAF 520
WYK + ++ + S L G Y C + G+
Sbjct: 115 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ 174
Query: 521 STSRV 525
+ +
Sbjct: 175 AIITL 179
Score = 76.2 bits (187), Expect = 6e-16
Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 36/186 (19%)
Query: 760 ATVNEEFKFTVQVSISPEPKVS--WFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQ 817
+ + T ++ S W + + E L +
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--------ALPGQKTEFKVDSDDQW 61
Query: 818 AEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQP 876
E+ C+ + + + + + P+ + ++EG L CK VP
Sbjct: 62 GEYSCVFLPEPMGTAN-----IQL---HGPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113
Query: 877 T-LKWFKDG-----RELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMGTT 919
T W+K + + +S G L G Y C + G+
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173
Query: 920 SSSAAL 925
+ L
Sbjct: 174 QAIITL 179
Score = 75.1 bits (184), Expect = 2e-15
Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 36/199 (18%)
Query: 456 AILTEQGTVSLECKVMGIPTP--QLIWYKDNKKIKAGDIF--ALTANPKDPSSLGTYTCE 511
+ + L C + T W K +K + G Y+C
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCV 67
Query: 512 AVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILE 571
+ T+ + P + G +A+L
Sbjct: 68 FLP---EPMGTANIQLH--------------------GPPRVKAVKSSEHINEGETAMLV 104
Query: 572 CQVLVPPWPRSIYWYNKEGVVE------ASDKYHIMADGLGGYSIEINYLEAVDD-GEWK 624
C+ P WY + + ++ + + G + I L D G+++
Sbjct: 105 CKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-GRSELHIENLNMEADPGQYR 163
Query: 625 CVATSSSGVKQFSAAYVHV 643
C TSS G Q + + V
Sbjct: 164 CNGTSSKGSDQ-AIITLRV 181
Score = 72.8 bits (178), Expect = 9e-15
Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 15/145 (10%)
Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 362
+ + + D G YS E + Q+ P +
Sbjct: 44 DALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA-------NIQLHGPPRVKAVKSSEHIN 96
Query: 363 VGTRARLLVEIRS-PTEIKIHWYRNDRKLEE------NKIYRTQHDGNFYFIDLSSVSL- 414
G A L+ + S P WY+ ++ + + + ++++
Sbjct: 97 EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156
Query: 415 FDSGRWTCLAENAVGRSHCSCELSV 439
D G++ C ++ G L V
Sbjct: 157 ADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 71.2 bits (174), Expect = 3e-14
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 17/154 (11%)
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 148
+ + + D G YS E + Q+ P +
Sbjct: 44 DALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA-------NIQLHGPPRVKAVKSSEHIN 96
Query: 149 VGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 205
G A L+ + S T+ + + ++ + + +RF + GR+EL+I
Sbjct: 97 EGETAMLVCKSESVPPVTDWA-WYKITDSEDKALMNGSE-----SRFFVSSSQGRSELHI 150
Query: 206 RRVRR-DDGGRYSVTASNESGYSTAKFELSVESQ 238
+ D G+Y ++ G A L V S
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 184
Score = 71.2 bits (174), Expect = 3e-14
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 17/154 (11%)
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 255
+ + + D G YS E + Q+ P +
Sbjct: 44 DALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA-------NIQLHGPPRVKAVKSSEHIN 96
Query: 256 VGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
G A L+ + S T+ + + ++ + + +RF + GR+EL+I
Sbjct: 97 EGETAMLVCKSESVPPVTDWA-WYKITDSEDKALMNGSE-----SRFFVSSSQGRSELHI 150
Query: 313 RRVRR-DDGGRYSVTASNESGYSTAKFELSVESQ 345
+ D G+Y ++ G A L V S
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 184
Score = 67.4 bits (164), Expect = 6e-13
Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 36/186 (19%)
Query: 668 VSFECKVVGFPTPTLQ--WFKDNEELK----PGDVYQLTGTSS--LGSYCCVAKNVMGKA 719
+ C + T W K LK PG + S G Y CV
Sbjct: 16 ILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLP----- 70
Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQV-SISPEP 778
E I+ + P+ S E + S+ P
Sbjct: 71 EPMGTANIQ----------------LHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT 114
Query: 779 KVSWFRDDQQV-----VESDNVKILKETLGVCHLKIHALEVA-DQAEWKCIATNDFGQSI 832
+W++ S++ + + G L I L + D +++C T+ G
Sbjct: 115 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ 174
Query: 833 TSCFLK 838
L+
Sbjct: 175 AIITLR 180
Score = 60.4 bits (146), Expect = 2e-10
Identities = 27/161 (16%), Positives = 42/161 (26%), Gaps = 37/161 (22%)
Query: 4 PTPQLIWYKDNKKIKAGDIF--ALTANPKDPSSLGTYTCEAVNCMGAAFS---------- 51
W K +K + G Y+C + +
Sbjct: 28 EVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVK 87
Query: 52 ---TSRVIARGQQSFL-----------------DNDDVPFNRAQGDHPIFGNRFRAINRD 91
+S I G+ + L D G RF +
Sbjct: 88 AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSES----RFFVSSSQ 143
Query: 92 GRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQ 131
GR+EL+I + D G+Y ++ G A L V S
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 184
Score = 54.3 bits (130), Expect = 2e-08
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 856 AVLSEGGAVNLECKVIGVPQPTL--KWFKDGRELKAGDIH------KIISGEDGTCCLGI 907
V G + L C + +W K G LK + K+ S + G
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQW----GE 63
Query: 908 YTCEAHNCMGTTSSS--AALLGFEDKSQIEKAEEGKKALI 945
Y+C T++ + E EG+ A++
Sbjct: 64 YSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAML 103
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 74.7 bits (184), Expect = 2e-16
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 841 VPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE 899
P L+ L+ G L+CK G P P + W K+G D I E
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-E 60
Query: 900 DGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
GT L G YTC A + G TS SA L
Sbjct: 61 QGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 69.0 bits (169), Expect = 2e-14
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 649 YRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-YQLTGTSSL- 705
P ++ +CK G P P + W K+ D + +L
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIED 729
G+Y CVA + G+ S L + +
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 64.7 bits (158), Expect = 6e-13
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQH 400
S P ++ + + V A L + P I W + T
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPV---ISWLKEGFTFPGRDPRATIQ 59
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
+ I ++ + D+G +TC+A ++ G + S L V
Sbjct: 60 EQGTLQI--KNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 64.0 bits (156), Expect = 1e-12
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 545 MPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMA 602
PI ++ N + +A+L+C+ P P I W KEG + I
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLP-VISWL-KEGFTFPGRDPRATIQE 60
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
G +++I L D G + CVATSSSG +S A + V
Sbjct: 61 QG----TLQIKNLRISDTGTYTCVATSSSGETSWS-AVLDVT 97
Score = 60.1 bits (146), Expect = 3e-11
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 441 VPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD-IFALTAN 498
+ P + L GT L+CK G P P + W K+ D +
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61
Query: 499 PKDPSSL----------GTYTCEAVNCMGAAFSTSR--VIARG 529
+L GTYTC A + G ++ V G
Sbjct: 62 ----GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100
Score = 59.3 bits (144), Expect = 5e-11
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
+ P ++G + V+ + + P P +SW ++ D ++E G
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ-GT- 63
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
L+I L ++D + C+AT+ G++ S L
Sbjct: 64 -LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 50.1 bits (120), Expect = 1e-07
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 34/118 (28%)
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD----- 184
S P ++ + + V A L KC +A GD
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALL----------KC------------KATGDPLPVI 40
Query: 185 ------HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
G RA ++ T L I+ +R D G Y+ A++ SG ++ L V
Sbjct: 41 SWLKEGFTFPGRDPRATIQEQGT-LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 50.1 bits (120), Expect = 1e-07
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 34/118 (28%)
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD----- 291
S P ++ + + V A L KC +A GD
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALL----------KC------------KATGDPLPVI 40
Query: 292 ------HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
G RA ++ T L I+ +R D G Y+ A++ SG ++ L V
Sbjct: 41 SWLKEGFTFPGRDPRATIQEQGT-LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 42.4 bits (100), Expect = 5e-05
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 77 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
G RA ++ T L I+ +R D G Y+ A++ SG ++ L V
Sbjct: 46 GFTFPGRDPRATIQEQGT-LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 38.9 bits (91), Expect = 8e-04
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 17/71 (23%)
Query: 2 GIPTPQLIWYKDNKKIKAGD-IFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
G P P + W K+ D + +L GTYTC A + G
Sbjct: 34 GDPLPVISWLKEGFTFPGRDPRATIQEQ----GTLQIKNLRISDTGTYTCVATSSSGETS 89
Query: 51 STSR--VIARG 59
++ V G
Sbjct: 90 WSAVLDVTESG 100
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 79.2 bits (194), Expect = 2e-16
Identities = 29/173 (16%), Positives = 42/173 (24%), Gaps = 27/173 (15%)
Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES-----GYSTAKFELSVESQVPDA 349
F R N T L + V DGGRY + S G L V P
Sbjct: 78 FLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID- 408
+ + V G + + WY E + Q N
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 409 --------------------LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
+ + + D+GR C G ++L
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 76.9 bits (188), Expect = 1e-15
Identities = 36/250 (14%), Positives = 55/250 (22%), Gaps = 49/250 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ 61
P + W K ++ +F N +
Sbjct: 31 DTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG-------------------------- 64
Query: 62 SFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES---- 117
V + + F R N T L + V DGGRY + S
Sbjct: 65 ------FVESDSYKESFGDFLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTE 117
Query: 118 -GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI-----------RSPTEI 165
G L V P + + V G + PT
Sbjct: 118 FGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF 177
Query: 166 KCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 225
+ + G + G L IR + D GR + G
Sbjct: 178 ENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG 237
Query: 226 YSTAKFELSV 235
A ++
Sbjct: 238 ELDADRSSTI 247
Score = 75.3 bits (184), Expect = 4e-15
Identities = 30/171 (17%), Positives = 42/171 (24%), Gaps = 17/171 (9%)
Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES-----GYSTAKFELSVESQVPDA 242
F R N T L + V DGGRY + S G L V P
Sbjct: 78 FLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136
Query: 243 PAFIRRLHDIAVKVGTRARLLVEI-----------RSPTEIKCQFDLNNTIPFSFRAQGD 291
+ + V G + PT + + G
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+ G L IR + D GR + G A ++
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 70.3 bits (171), Expect = 2e-13
Identities = 29/241 (12%), Positives = 60/241 (24%), Gaps = 68/241 (28%)
Query: 558 ENVKAKIGTSAILECQVLVPPW--PRSIYWY--------------------------NKE 589
V+ G + L C + P I W +
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 590 GVVEASDKYHIMA--DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF---SAAYVHVL 644
E+ + A L ++ + ++ D G + C S +F + + V +
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 645 MPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV------- 696
V + + V D+G ++ C + W+ + +
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLA 189
Query: 697 -----------------YQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
+G +L G C G+ ++ TI
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Query: 730 I 730
+
Sbjct: 250 V 250
Score = 67.2 bits (163), Expect = 2e-12
Identities = 22/215 (10%), Positives = 44/215 (20%), Gaps = 65/215 (30%)
Query: 775 SPEPKVSWFRDDQQVVESDNVKILK----------------------------ETLGVCH 806
+ P +SW + + K L
Sbjct: 32 TQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPT 91
Query: 807 LKIHALEVADQAEWKCIATN-----DFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSE 860
L++ + D + C +FG S LK+ + + V + E
Sbjct: 92 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV-TGHTPSNNVHVSTAEVVQVDE 150
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------------- 905
G + + C + W+ + + +
Sbjct: 151 GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS 210
Query: 906 ---------------GIYTCEAHNCMGTTSSSAAL 925
G CE G + +
Sbjct: 211 GARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 63.0 bits (152), Expect = 6e-11
Identities = 29/238 (12%), Positives = 50/238 (21%), Gaps = 69/238 (28%)
Query: 357 HDIAVKVGTRARLLVEIRSPTEI---KIHWYRNDRKLEENKI----YRTQHDGNFYFID- 408
++ V G L + + I W + K+ Y Q +G +
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 409 ------------------------LSSVSLFDSGRWTCLAEN-----AVGRSHCSCELSV 439
L+ V D GR+ C G S L V
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 440 LVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
E + ++G +++ C + WY + +
Sbjct: 130 TGHTP-SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 499 PKDPS--------------------SL----------GTYTCEAVNCMGAAFSTSRVI 526
+L G CE G +
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Score = 61.9 bits (149), Expect = 2e-10
Identities = 33/244 (13%), Positives = 57/244 (23%), Gaps = 74/244 (30%)
Query: 462 GTVSLECKVM---GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL------------- 505
GTV L C P + W K ++ +F N +
Sbjct: 18 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77
Query: 506 -------------------------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVP 540
G Y C+ + + LD V
Sbjct: 78 FLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ-----------WSIRTEFGLDAKSVV 126
Query: 541 FNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-------------- 586
+ + E V+ G + C ++ WY
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA-NANVTWYTGPTFFENYETGTY 185
Query: 587 ------NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAY 640
N+ G+ S + A G ++ I + D G C + G + +
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG-ELDADRS 244
Query: 641 VHVL 644
+L
Sbjct: 245 STIL 248
Score = 49.1 bits (116), Expect = 2e-06
Identities = 25/240 (10%), Positives = 42/240 (17%), Gaps = 84/240 (35%)
Query: 668 VSFECKVV---GFPTPTLQWFKDNEELKPGDVYQLT------------------------ 700
V C P + W K + V++
Sbjct: 20 VELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFL 79
Query: 701 --------GTSSL----------GSYCCVAKN-----VMGKAESSTQLTIEDIRNHLSEE 737
+L G Y C G S L +
Sbjct: 80 GRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG-------- 131
Query: 738 DKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ---------- 787
+ + Q + T + V+W+
Sbjct: 132 ------HTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTY 185
Query: 788 ----------QVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
S + G +L I A ++ D C G+
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 34.9 bits (79), Expect = 0.12
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 3/76 (3%)
Query: 860 EGGAVNLECKVI---GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCM 916
GG V L C P + W K ++ + K G + +
Sbjct: 16 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75
Query: 917 GTTSSSAALLGFEDKS 932
G A++ +
Sbjct: 76 GDFLGRASVANLAAPT 91
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 75.2 bits (185), Expect = 3e-16
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 837 LKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKII 896
L + P P+ + + L +E V G P PTL W +G+ L+ I +
Sbjct: 3 LTVYYP-----PRVVSLEEPELRLEHC--IEFVVRGNPPPTLHWLHNGQPLRESKIIHVE 55
Query: 897 SGEDGT---CCL----------GIYTCEAHNCMGTTSSSAAL 925
++G CL G YT A N +GT + +
Sbjct: 56 YYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
Score = 71.0 bits (174), Expect = 6e-15
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 24/106 (22%)
Query: 641 VHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT 700
+ V P PR V + + + E V G P PTL W + + L+ + +
Sbjct: 3 LTVYYP-----PRVVSLEEPELRLEH--CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVE 55
Query: 701 -------GTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
L G+Y +AKN +G A +
Sbjct: 56 YYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101
Score = 69.8 bits (171), Expect = 2e-14
Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 27/130 (20%)
Query: 436 ELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFAL 495
L+V P P E L + +E V G P P L W + + ++ I +
Sbjct: 2 ALTVYYP-----PRVVSLEEPELRLEHC--IEFVVRGNPPPTLHWLHNGQPLRESKIIHV 54
Query: 496 TANPKD-------------PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN 542
+ + G YT A N +G A T FL P +
Sbjct: 55 EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH------FLKEPF-PVD 107
Query: 543 SLMPPGPAPI 552
+ P P +
Sbjct: 108 EVSPTPPITV 117
Score = 64.1 bits (156), Expect = 2e-12
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
LT P+ + + + E V +P P + W + Q + ES + +
Sbjct: 3 LTVYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 803 GVCH---LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
G L + + + IA N G + +
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
Score = 61.0 bits (148), Expect = 2e-11
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 380 KIHWYRNDRKLEENKIYRTQ--HDGNFYFIDL--SSVSLFDSGRWTCLAENAVGRSHCSC 435
+HW N + L E+KI + +G L + + +++G +T +A+N +G ++ +
Sbjct: 36 TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 95
Query: 436 ELSVLVP 442
L
Sbjct: 96 NGHFLKE 102
Score = 46.3 bits (110), Expect = 3e-06
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 13/68 (19%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKD-------------PSSLGTYTCEAVNCMGA 48
G P P L W + + ++ I + + + G YT A N +G
Sbjct: 31 GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT 90
Query: 49 AFSTSRVI 56
A T
Sbjct: 91 ANQTINGH 98
Score = 44.4 bits (105), Expect = 2e-05
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY- 608
P + E + +E V P P +++W + + S H+ G
Sbjct: 8 PPRVVSLEEPE---LRLEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 609 --SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
+ N ++G + +A + G + H L
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQT-INGHFL 100
Score = 39.8 bits (93), Expect = 5e-04
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------ESQVPDAPAFI 139
L + + G Y++ A N G + + P P +
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117
Score = 39.8 bits (93), Expect = 5e-04
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------ESQVPDAPAFI 246
L + + G Y++ A N G + + P P +
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117
Score = 39.8 bits (93), Expect = 5e-04
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------ESQVPDAPAFI 353
L + + G Y++ A N G + + P P +
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 74.8 bits (184), Expect = 3e-16
Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 341 SVESQVPDAPAFI---RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
S S D ++I +A R L E+ P ++ W ++ ++ E+
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPW-AEVRWTKDGEEVVESPALL 60
Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA 456
Q + + L +V L DSG + C ++ S ++V P +
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASFTVTVTEP----PVRIIYSGPS 111
Score = 70.6 bits (173), Expect = 8e-15
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
+ G A E T ++ P +V W +D ++VVES + + KE V
Sbjct: 12 SWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKED-TVRR 69
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA 856
L + A+++ D E+ C ++ S + V + + +
Sbjct: 70 LVLPAVQLEDSGEYLCEIDDE------SASFTVTV--TEPPVRIIYSGPS 111
Score = 69.8 bits (171), Expect = 2e-14
Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 841 VPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED 900
V P + AV V L C++ P ++W KDG E+ + ED
Sbjct: 10 VSSWIVYPSGKVYVAAV--RLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-ED 65
Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAAL 925
L G Y CE S+S +
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCEI----DDESASFTV 96
Score = 60.2 bits (146), Expect = 5e-11
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 14/119 (11%)
Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIM 601
S ++ V A +L C++ P + W K+G V S +
Sbjct: 6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPW-A-EVRWT-KDGEEVVESPALLLQ 62
Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
+ + + ++ D GE+ C S ++ V V P R + S +
Sbjct: 63 KED-TVRRLVLPAVQLEDSGEYLCEIDDES-----ASFTVTVTEP----PVRIIYSGPS 111
Score = 58.6 bits (142), Expect = 1e-10
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 20/97 (20%)
Query: 646 PKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GT 702
P + AV + V C++ P ++W KD EE+ L
Sbjct: 11 SSWIVYPSGKVYVAAVRLER--VVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV 67
Query: 703 SSL----------GSYCCVAKNVMGKAESSTQLTIED 729
L G Y C +S +T+ +
Sbjct: 68 RRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTE 100
Score = 49.8 bits (119), Expect = 2e-07
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 15/97 (15%)
Query: 434 SCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDI 492
S S + + + V L C++ P ++ W KD +++
Sbjct: 2 SSGSSGTDVS--SWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPA 58
Query: 493 FALTANPKDPSSL----------GTYTCEAVNCMGAA 519
L L G Y CE + +
Sbjct: 59 LLLQKE-DTVRRLVLPAVQLEDSGEYLCEIDDESASF 94
Score = 49.0 bits (117), Expect = 3e-07
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 22/115 (19%)
Query: 127 SVESQVPDAPAFI---RRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQ 182
S S D ++I +A R L E+ P E++ D
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKD------------ 49
Query: 183 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
+ D L + V+ +D G Y +ES A F ++V
Sbjct: 50 -GEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDES----ASFTVTVT 99
Score = 49.0 bits (117), Expect = 3e-07
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 22/115 (19%)
Query: 234 SVESQVPDAPAFI---RRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQ 289
S S D ++I +A R L E+ P E++ D
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKD------------ 49
Query: 290 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
+ D L + V+ +D G Y +ES A F ++V
Sbjct: 50 -GEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDES----ASFTVTVT 99
Score = 38.6 bits (90), Expect = 0.002
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 11/58 (18%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAA 49
P ++ W KD +++ L L G Y CE + +
Sbjct: 38 CRPWAEVRWTKDGEEVVESPALLLQKE-DTVRRLVLPAVQLEDSGEYLCEIDDESASF 94
Score = 37.8 bits (88), Expect = 0.003
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
D L + V+ +D G Y +ES A F ++V
Sbjct: 56 SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDES----ASFTVTVT 99
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 77.2 bits (189), Expect = 4e-16
Identities = 34/193 (17%), Positives = 53/193 (27%), Gaps = 20/193 (10%)
Query: 460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVNC 515
E G+V L C + W+KD K I + L +N KDP G Y C+
Sbjct: 17 EDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPR--GMYQCKGSQN 71
Query: 516 MGAAFSTSRVIARGQQSFLDN------DDVPFNSLMPPGPAPIFIKEVENVKAKI-GTSA 568
+ + D G + K I GT+
Sbjct: 72 KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131
Query: 569 ILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628
IL C I W + + + + + + + E G + C
Sbjct: 132 ILTCPQYPGS---EILWQHNDKNIGGDEDDKNIGSD-EDHLSLKEFSELEQSGYYVCYPR 187
Query: 629 SSSGVKQFSAAYV 641
S Y+
Sbjct: 188 GSKPEDANFYLYL 200
Score = 74.5 bits (182), Expect = 3e-15
Identities = 21/184 (11%), Positives = 49/184 (26%), Gaps = 42/184 (22%)
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ---- 830
+ ++WF+D + + K + + + ++C + + +
Sbjct: 27 AEAKNITWFKDGKMIGFLTEDKK--------KWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78
Query: 831 ---------SITSCFLKLNVPK----------HYKKPKFLEELKAVLSEGGAVNLECKVI 871
+ K + K + + + V G V L C
Sbjct: 79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ- 137
Query: 872 GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL---------GIYTCEAHNCMGTTSSS 922
P + W + + + + K I ++ L G Y C ++
Sbjct: 138 -YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Query: 923 AALL 926
L
Sbjct: 197 YLYL 200
Score = 71.8 bits (175), Expect = 3e-14
Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 24/193 (12%)
Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT------GTSSLGSYCCVAKNVMGK 718
DG V C + WFKD + + + G Y C K
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSK 74
Query: 719 AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS-CQATVNEEFKFTVQVS---- 773
Q+ +++D K +G + + + V +S
Sbjct: 75 P---LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131
Query: 774 -----ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
P ++ W +D+ + ++ K + LK + E+ + C
Sbjct: 132 ILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS-ELEQSGYYVCYPRGSK 190
Query: 829 GQSITSCFLKLNV 841
+ +L L
Sbjct: 191 P-EDANFYLYLRA 202
Score = 60.7 bits (146), Expect = 2e-10
Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 41/174 (23%)
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS--------- 431
I W+++ + + + + + L S + G + C +
Sbjct: 32 ITWFKDGKMIGFLTEDKKKWN-------LGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGS 84
Query: 432 -HCSCELSVLVPKA-------------YKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ 477
+ + + A + T+ + TV L C P +
Sbjct: 85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSE 142
Query: 478 LIWYKDNKKIKAGDIFALTANPKDPSSL---------GTYTCEAVNCMGAAFST 522
++W ++K I + + +D SL G Y C +
Sbjct: 143 ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 60.7 bits (146), Expect = 2e-10
Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 22/157 (14%)
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ--------VP 347
G + D + N+ +D G Y S + +
Sbjct: 38 GKMIGFLTEDKKK-WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKD 96
Query: 348 DAPAFIRRLH----DIAVKVGTRARLLVEIRSPT---------EIKIHWYRNDRKLEENK 394
DA + + + T+ V I T +I W ND+ + ++
Sbjct: 97 DAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDE 156
Query: 395 IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
+ + L SG + C +
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 193
Score = 57.2 bits (137), Expect = 3e-09
Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 18/144 (12%)
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKII-----SGEDGTCCLGIYTCE 911
E G+V L C + WFKDG+ + K + +D G+Y C+
Sbjct: 14 DYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPR---GMYQCK 67
Query: 912 AHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIE 971
+G D ++ K A D +++G+ + +
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAK-------KDAAKKDDAKKDDAKKDGSDGNEEMGGITQT 120
Query: 972 EREISFSFDGKEVSVSLYETPDLT 995
++S S ++ Y ++
Sbjct: 121 PYKVSISGTTVILTCPQYPGSEIL 144
Score = 53.7 bits (128), Expect = 5e-08
Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 45/200 (22%)
Query: 557 VENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLE 616
V+ + S +L C I W+ K+G + LG + +
Sbjct: 10 VKVYDYQEDGSVLLTCDAEAKN----ITWF-KDGKMIGFLTEDKKKWNLGSNAKD----- 59
Query: 617 AVDDGEWKCVATSSSG-----------VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
G ++C + + K + M
Sbjct: 60 --PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGI 117
Query: 666 GLVSFECKVVG---------FPTPTLQWFKDNEELKPGDVYQLTGTSSL----------- 705
++ + G +P + W +++ + + + G+
Sbjct: 118 TQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE 177
Query: 706 --GSYCCVAKNVMGKAESST 723
G Y C + + +
Sbjct: 178 QSGYYVCYPRGSKPEDANFY 197
Score = 48.0 bits (113), Expect = 3e-06
Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 12/161 (7%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
G + D + N+ +D G Y S + + A +
Sbjct: 38 GKMIGFLTEDKKK-WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKD 96
Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI-----PFSFRAQ-----GDHPIFGNR 191
+ E+ T+ + ++ T P ++ D I G+
Sbjct: 97 DAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDE 156
Query: 192 FRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKF 231
L+++ + G Y +
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY 197
Score = 48.0 bits (113), Expect = 3e-06
Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 12/161 (7%)
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 248
G + D + N+ +D G Y S + + A +
Sbjct: 38 GKMIGFLTEDKKK-WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKD 96
Query: 249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI-----PFSFRAQ-----GDHPIFGNR 298
+ E+ T+ + ++ T P ++ D I G+
Sbjct: 97 DAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDE 156
Query: 299 FRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKF 338
L+++ + G Y +
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY 197
Score = 45.3 bits (106), Expect = 3e-05
Identities = 20/174 (11%), Positives = 34/174 (19%), Gaps = 53/174 (30%)
Query: 2 GIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA 57
+ W+KD K I + L +N KDP G Y C+ +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPR--GMYQCKGSQNKSKPLQVYYRMG 83
Query: 58 RGQQSFLDNDDVPFNRAQG----------------------------------------- 76
+ D +
Sbjct: 84 SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEI 143
Query: 77 -----DHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKF 124
D I G+ L+++ + G Y +
Sbjct: 144 LWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY 197
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 73.2 bits (180), Expect = 7e-16
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK-IISG---EDG 901
+ + + E + ++ GG V L C+V P P + W KDG L I+ +D
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQ 69
Query: 902 TCCLGIYTCEAHNCMGTTSSSAAL 925
G Y+C A + S A+
Sbjct: 70 ----GTYSCVATHSSHGPQESRAV 89
Score = 68.2 bits (167), Expect = 4e-14
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELK--PGDVYQLTGTSSL-- 705
+ + V + G V+ C+V P+P + W KD L P V L
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQ 69
Query: 706 GSYCCVAKNVMGKAESSTQLTI 727
G+Y CVA + + S ++I
Sbjct: 70 GTYSCVATHSSHGPQESRAVSI 91
Score = 67.1 bits (164), Expect = 9e-14
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
+ E E G TV+L C+V P+PQ+ W KD + L P
Sbjct: 7 GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGP 66
Query: 503 SSLGTYTCEAVNCMGAAFSTSRV 525
GTY+C A + + V
Sbjct: 67 QDQGTYSCVATHSSHGPQESRAV 89
Score = 60.1 bits (146), Expect = 3e-11
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
+ + + T +V P P++ W +D + + L
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS----------PVL 59
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ + DQ + C+AT+ S + +++
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 59.7 bits (145), Expect = 3e-11
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH 400
S S + + AV G L E+ + +IHW ++ L
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL------PP 55
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
L + D G ++C+A ++ S +S+ +
Sbjct: 56 SPVLI---LPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 48.9 bits (117), Expect = 2e-07
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
+ E E G + L C+V P P I+W K+GV +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSP-QIHWM-KDGVP-----LPLPPSP----V 58
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMP 646
+ + + D G + CVAT SS Q S + ++ P
Sbjct: 59 LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 48.9 bits (117), Expect = 2e-07
Identities = 18/120 (15%), Positives = 28/120 (23%), Gaps = 31/120 (25%)
Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-H 185
S S + + AV G L C+
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTL----------TCE------------VPAQPS 39
Query: 186 PIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 240
P G + L + + D G YS A++ S +S+ P
Sbjct: 40 PQIHWMKDGVP---LPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 48.9 bits (117), Expect = 2e-07
Identities = 18/120 (15%), Positives = 28/120 (23%), Gaps = 31/120 (25%)
Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-H 292
S S + + AV G L C+
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTL----------TCE------------VPAQPS 39
Query: 293 PIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 347
P G + L + + D G YS A++ S +S+ P
Sbjct: 40 PQIHWMKDGVP---LPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 45.9 bits (109), Expect = 3e-06
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
P+PQ+ W KD + L P GTY+C A + + V
Sbjct: 36 AQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89
Score = 42.4 bits (100), Expect = 5e-05
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 88 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
+ L + + D G YS A++ S +S+ P
Sbjct: 51 LPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 76.6 bits (188), Expect = 1e-15
Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 43/207 (20%)
Query: 558 ENVKAKIGTSAILECQVLVPP----------WPRS-----IYWYNKEGVVEASDKY---- 598
+ + G++ +EC+ V W + + +E + Y
Sbjct: 9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRA 68
Query: 599 HIMADGL--GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
++ D L G +++I ++ D G ++C+ S G + V V P N
Sbjct: 69 RLLKDQLSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKVNAPYNKINQ---- 122
Query: 657 SLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-----------VYQLTGT--- 702
+ V C+ G+P + W + ++ G ++ +T T
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182
Query: 703 --SSLGSYCCVAKNVMGKAESSTQLTI 727
++ + C + + + + +L I
Sbjct: 183 NTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 65.4 bits (159), Expect = 7e-12
Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 39/201 (19%)
Query: 759 QATVNEEFKFTVQVSISP-----EPKVSWFRDDQQVVESDNVKILKE------------- 800
+ + V W +D+ +++ + + +
Sbjct: 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 801 ----TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA 856
+LG L+I +++ D ++C+ + G +K+N P + +
Sbjct: 72 KDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQ----RILV 126
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFK-DGRELKAGDIHKIISGEDGTCCL---------- 905
V L C+ G P+ + W D + L E+ +
Sbjct: 127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTT 186
Query: 906 -GIYTCEAHNCMGTTSSSAAL 925
I+ C + +A L
Sbjct: 187 NEIFYCTFRRLDPEENHTAEL 207
Score = 58.9 bits (142), Expect = 1e-09
Identities = 23/183 (12%), Positives = 56/183 (30%), Gaps = 37/183 (20%)
Query: 375 SPTEIKIHWYRNDRKL-----------EENKIY--RTQ------HDGNFYFIDLSSVSLF 415
+ ++W D+ + ++ Y R + GN ++ V L
Sbjct: 32 DLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ-ITDVKLQ 90
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPT 475
D+G + C+ G + + V P + + L C+ G P
Sbjct: 91 DAGVYRCMISYG-GADYKRITVKVNAPYNKINQ----RILVVDPVTSEHELTCQAEGYPK 145
Query: 476 PQLIWYKDNKKIKAGDIFALTANPKD------------PSSLGTYTCEAVNCMGAAFSTS 523
++IW + ++ +G + ++ ++ + C T+
Sbjct: 146 AEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTA 205
Query: 524 RVI 526
++
Sbjct: 206 ELV 208
Score = 53.5 bits (128), Expect = 6e-08
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 13/158 (8%)
Query: 292 HPIFGNR---FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
H + R + G L I V+ D G Y S G + + V +
Sbjct: 61 HSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNK 119
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
I + V + L + P + ++ W +D ++ K T
Sbjct: 120 INQRI----LVVDPVTSEHELTCQAEGYP-KAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 408 DLSS---VSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+++S ++ + + C + + EL +
Sbjct: 175 NVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212
Score = 36.9 bits (85), Expect = 0.019
Identities = 24/174 (13%), Positives = 42/174 (24%), Gaps = 25/174 (14%)
Query: 78 HPIFGNR---FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
H + R + G L I V+ D G Y S G + + V +
Sbjct: 61 HSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNK 119
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
I + V + L + P E+ + + G
Sbjct: 120 INQRI----LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS------------GKTT 163
Query: 193 RAINRDGRTELNIR---RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
++ N+ R+ + T EL + P
Sbjct: 164 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHP 217
Score = 36.9 bits (85), Expect = 0.019
Identities = 24/174 (13%), Positives = 42/174 (24%), Gaps = 25/174 (14%)
Query: 185 HPIFGNR---FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
H + R + G L I V+ D G Y S G + + V +
Sbjct: 61 HSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNK 119
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
I + V + L + P E+ + + G
Sbjct: 120 INQRI----LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS------------GKTT 163
Query: 300 RAINRDGRTELNIR---RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
++ N+ R+ + T EL + P
Sbjct: 164 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHP 217
Score = 33.8 bits (77), Expect = 0.20
Identities = 7/67 (10%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKD------------PSSLGTYTCEAVNCMGAA 49
G P ++IW + ++ +G + ++ ++ + C
Sbjct: 142 GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE 201
Query: 50 FSTSRVI 56
T+ ++
Sbjct: 202 NHTAELV 208
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 73.9 bits (181), Expect = 1e-15
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 27/127 (21%)
Query: 632 GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEE 690
G + L+P+ FV++ + G V C+ VG P P +QW+ + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQG 61
Query: 691 LKPGDV----------------YQLTGTSSL----------GSYCCVAKNVMGKAESSTQ 724
Y S++ G+Y C A N + +
Sbjct: 62 PNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRA 121
Query: 725 LTIEDIR 731
++ +R
Sbjct: 122 PRVKWVR 128
Score = 70.8 bits (173), Expect = 1e-14
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 24/129 (18%)
Query: 428 VGRSHCSCE-LSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNK 485
+G SH S LVP+ F + + G +V L C+ +G P P++ W+ + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60
Query: 486 KIKAGDIFALTANPKDPSSL----------------------GTYTCEAVNCMGAAFSTS 523
D + GTY C A N T
Sbjct: 61 GPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTR 120
Query: 524 RVIARGQQS 532
+ ++
Sbjct: 121 APRVKWVRA 129
Score = 68.9 bits (168), Expect = 6e-14
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 23/108 (21%)
Query: 841 VPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK----- 894
VP+ F++ + GG+V L C+ +G P P ++W+ +G+
Sbjct: 15 VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74
Query: 895 -------IISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
+ + G Y C A N + A
Sbjct: 75 LDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
Score = 62.0 bits (150), Expect = 2e-11
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN------------V 795
F++ S Q V + + SP P++ W+ + Q + + +
Sbjct: 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80
Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
+ I L D ++C A+ND ++ + +
Sbjct: 81 HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 59.3 bits (143), Expect = 1e-10
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 19/111 (17%)
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENK------- 394
+ F++ VG L E P I W+ + +
Sbjct: 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE---IQWWFEGQGPNDICSQLWDGA 73
Query: 395 ------IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
I+ T H I + ++ D+G + C A N R+H + V
Sbjct: 74 RLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 52.3 bits (125), Expect = 4e-08
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 542 NSLMPPGP-APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY------------NK 588
+ L+P G F++ + + +G S L C+ + P P I W+
Sbjct: 12 SGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE-IQWWFEGQGPNDICSQLW 70
Query: 589 EGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
+G H +I I+ L D G ++C A++ + A
Sbjct: 71 DGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRA 121
Score = 51.9 bits (124), Expect = 5e-08
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 3/115 (2%)
Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQ-GDHPI 187
+ F++ VG L E SP EI+ F+ + G
Sbjct: 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
+ ++ + ++I + +D G Y ASN+ + V+ A
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131
Score = 51.9 bits (124), Expect = 5e-08
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 3/115 (2%)
Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQ-GDHPI 294
+ F++ VG L E SP EI+ F+ + G
Sbjct: 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
+ ++ + ++I + +D G Y ASN+ + V+ A
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131
Score = 38.5 bits (89), Expect = 0.002
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 22/83 (26%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------------------GTYT 39
G P P++ W+ + + D + GTY
Sbjct: 47 GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYE 106
Query: 40 CEAVNCMGAAFSTSRVIARGQQS 62
C A N T + ++
Sbjct: 107 CRASNDPDRNHLTRAPRVKWVRA 129
Score = 38.1 bits (88), Expect = 0.003
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
++I + +D G Y ASN+ + V+ A
Sbjct: 92 ISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 73.3 bits (180), Expect = 1e-15
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
P + ++ G L C G P PT+ W KDG + D E+G L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL-ENGV--LQ 65
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
G YTC A G + SA +
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 69.0 bits (169), Expect = 4e-14
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-VYQLTGTSSL---- 705
P + C G P PT+ W KD + D + L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 706 ------GSYCCVAKNVMGKAESSTQLTIED 729
G Y C+A G+A S + +++
Sbjct: 69 AKLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Score = 67.9 bits (166), Expect = 8e-14
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
P + + V V L I W ++ + Q + I
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI- 66
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
L D+GR+TC+A G + S + V
Sbjct: 67 -RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99
Score = 65.2 bits (159), Expect = 7e-13
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 545 MPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMA 602
P+ + N + + +L C P P +I W K+G V + +
Sbjct: 3 SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVP-TILWR-KDGVLVSTQDSRIKQLE 60
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN-YRKPRFVE 656
+G ++I Y + D G + C+A++ SG +S AY+ V + PR +
Sbjct: 61 NG----VLQIRYAKLGDTGRYTCIASTPSGEATWS-AYIEVQEFGVPVQPPRPTD 110
Score = 65.2 bits (159), Expect = 7e-13
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
+ P +G + V+ F + + SP P + W +D V D+ E GV
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-GV- 63
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
L+I ++ D + CIA+ G++ S ++++
Sbjct: 64 -LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99
Score = 60.2 bits (146), Expect = 4e-11
Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 441 VPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF------ 493
+ P + + GT L C G P P ++W KD + D
Sbjct: 2 SSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN 61
Query: 494 -ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
L G YTC A G A ++ +
Sbjct: 62 GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 47.8 bits (114), Expect = 9e-07
Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 36/131 (27%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD---------- 184
P + + V V L C A G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVL----------SC------------VATGSPVPTILWRKD 45
Query: 185 -HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
+ R + L IR + D GRY+ AS SG +T + V Q P
Sbjct: 46 GVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV--QEFGVP 102
Query: 244 AFIRRLHDIAV 254
R D +
Sbjct: 103 VQPPRPTDPNL 113
Score = 47.8 bits (114), Expect = 9e-07
Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 36/131 (27%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD---------- 291
P + + V V L C A G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVL----------SC------------VATGSPVPTILWRKD 45
Query: 292 -HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
+ R + L IR + D GRY+ AS SG +T + V Q P
Sbjct: 46 GVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV--QEFGVP 102
Query: 351 AFIRRLHDIAV 361
R D +
Sbjct: 103 VQPPRPTDPNL 113
Score = 40.9 bits (96), Expect = 2e-04
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 77 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
+ R + L IR + D GRY+ AS SG +T + V Q P
Sbjct: 46 GVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV--QEFGVP 102
Query: 137 AFIRRLHDIAV 147
R D +
Sbjct: 103 VQPPRPTDPNL 113
Score = 38.6 bits (90), Expect = 0.002
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF-------ALTANPKDPSSLGTYTCEAVNCMGAAFSTSR 54
G P P ++W KD + D L G YTC A G A ++
Sbjct: 34 GSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAY 93
Query: 55 V 55
+
Sbjct: 94 I 94
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 75.9 bits (186), Expect = 1e-15
Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 17/206 (8%)
Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR------ 307
V LLV + NT P F GR
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 367
L + + D G Y++ ++E+ T Q ++ + VK
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV--TQPFLQVTNTTVKELDSV 128
Query: 368 RLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
L I W N + L+ + + + I + D+G + C N
Sbjct: 129 TLTCLSNDI-GANIQWLFNSQSLQLTERMTLSQNNSILRI--DPIKREDAGEYQCEISNP 185
Query: 428 VGRSHC-SCELSVLVPKAYKAPFFTK 452
V S +L ++ P
Sbjct: 186 VSVRRSNSIKLDIIFD-----PHHHH 206
Score = 66.2 bits (161), Expect = 3e-12
Identities = 26/193 (13%), Positives = 57/193 (29%), Gaps = 31/193 (16%)
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDD----QQVVESDNVKILKETLGVCH-------- 806
Q + V +W++ + + + G +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 807 ---LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGA 863
L + + D + T++ + T ++ +V + +P V E +
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRR-TQATVRFHVHQPVTQPFLQVTNTTV-KELDS 127
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAH 913
V L C ++W + + L+ + +S + L G Y CE
Sbjct: 128 VTLTCLS-NDIGANIQWLFNSQSLQLTE-RMTLSQNNSI--LRIDPIKREDAGEYQCEIS 183
Query: 914 NCMGTTSSSAALL 926
N + S++ L
Sbjct: 184 NPVSVRRSNSIKL 196
Score = 65.5 bits (159), Expect = 5e-12
Identities = 28/223 (12%), Positives = 60/223 (26%), Gaps = 53/223 (23%)
Query: 459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF------------------------- 493
E V L + + WYK N +I
Sbjct: 12 AEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG 71
Query: 494 ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
+L +G YT + + + P
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVR------------------FHVHQPVTQP 113
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
+V N K S L C +I W ++ +++ + + + I+
Sbjct: 114 FLQVTNTTVKELDSVTLTCLSNDI--GANIQWLFNSQSLQLTERMTLSQN---NSILRID 168
Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
++ D GE++C ++ V++ ++ + ++ P
Sbjct: 169 PIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD-----PHHHH 206
Score = 64.7 bits (157), Expect = 9e-12
Identities = 32/204 (15%), Positives = 59/204 (28%), Gaps = 24/204 (11%)
Query: 147 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR------ 200
V LLV + NT P F GR
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
L + + D G Y++ ++E+ T Q ++ + VK
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV--TQPFLQVTNTTVKELDSV 128
Query: 261 RLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
L I+ F+ + ++ + R ++++ L I ++R+D
Sbjct: 129 TLTCLSNDIGANIQWLFN-SQSLQLTERMT------------LSQNNSI-LRIDPIKRED 174
Query: 320 GGRYSVTASNESGYSTAK-FELSV 342
G Y SN + +L +
Sbjct: 175 AGEYQCEISNPVSVRRSNSIKLDI 198
Score = 64.7 bits (157), Expect = 9e-12
Identities = 23/203 (11%), Positives = 53/203 (26%), Gaps = 50/203 (24%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELK---------------PGDVYQ----LTGTSSL--- 705
V + W+K N G Y + SL
Sbjct: 17 VLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQ 76
Query: 706 -------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC 758
G Y + + +T + + + + +
Sbjct: 77 MITMKDMGVYTLDMTDENYRRTQAT----------------VRFHVHQPVTQPFLQVTNT 120
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
+ T + + W + Q + ++ + + + L+I ++ D
Sbjct: 121 TVKELDSVTLTCLSN-DIGANIQWLFNSQSLQLTERMTLSQNN---SILRIDPIKREDAG 176
Query: 819 EWKCIATNDFGQSITSCFLKLNV 841
E++C +N S +KL++
Sbjct: 177 EYQCEISNPVSVR-RSNSIKLDI 198
Score = 60.8 bits (147), Expect = 2e-10
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 18/142 (12%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
L + + D G Y++ ++E+ T Q ++ + VK L
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV--TQPFLQVTNTTVKELDSVTL 130
Query: 156 LVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 214
I+ F+ + ++ + R ++++ L I ++R+D G
Sbjct: 131 TCLSNDIGANIQWLFN-SQSLQLTERMT------------LSQNNSI-LRIDPIKREDAG 176
Query: 215 RYSVTASNESGYSTAK-FELSV 235
Y SN + +L +
Sbjct: 177 EYQCEISNPVSVRRSNSIKLDI 198
Score = 49.7 bits (118), Expect = 1e-06
Identities = 23/176 (13%), Positives = 42/176 (23%), Gaps = 51/176 (28%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF-------------------------ALTANPKDPSSLG 36
+ WYK N +I +L +G
Sbjct: 25 PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG 84
Query: 37 TYTCEAVNCMGAAFSTSRVIARGQ-----------QSFLDNDDVPFNRAQGDHPI----- 80
YT + + + Q + + D V D
Sbjct: 85 VYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWL 144
Query: 81 -------FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSV 128
R ++++ L I ++R+D G Y SN + +L +
Sbjct: 145 FNSQSLQLTERMT-LSQNNSI-LRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 39.6 bits (92), Expect = 0.002
Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 37/154 (24%)
Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI-----------------HKIISGEDG 901
+E V L + + W+K +I + I +G
Sbjct: 12 AEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG 71
Query: 902 TCCL--------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLST 953
+ G+YT + + + + + + +T
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQ----------VTNTT 121
Query: 954 IQEEGTSEIYDTPMASIEEREISFSFDGKEVSVS 987
++E + + T +++ I + F+ + + ++
Sbjct: 122 VKELDSVTL--TCLSNDIGANIQWLFNSQSLQLT 153
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 71.9 bits (177), Expect = 2e-15
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
+ L+ + V VG A +E+ P ++ W + L + DG + + L
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELSEP-DVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ L +G + A N + L V
Sbjct: 65 HNCQLGMTGEVSFQAANT----KSAANLKV 90
Score = 71.2 bits (175), Expect = 3e-15
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
+ + L + V E F +++S P+ W Q + S + +I+++
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDG-KKHI 61
Query: 807 LKIHALEVADQAEWKCIATND 827
L +H ++ E A N
Sbjct: 62 LILHNCQLGMTGEVSFQAANT 82
Score = 67.7 bits (166), Expect = 4e-14
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
+ + L V + G + E ++ P +W G+ L A +II +
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-DGKKHI 61
Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
L G + +A T S+A L
Sbjct: 62 LILHNCQLGMTGEVSFQA----ANTKSAANL 88
Score = 66.2 bits (162), Expect = 2e-13
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 19/95 (20%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
+ L V G FE ++ P QW + L ++ L
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDI 730
G A N +S+ L ++++
Sbjct: 63 ILHNCQLGMTGEVSFQAAN----TKSAANLKVKEL 93
Score = 58.1 bits (141), Expect = 1e-10
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 549 PAPI-FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
A I K + V+ +G +A E ++ P W +G + AS I+ DG
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIELSEP--DVHGQWK-LKGQPLAASPDCEIIEDG-K 58
Query: 607 GYSIEINYLEAVDDGEWKCVATSSS 631
+ + ++ + GE A ++
Sbjct: 59 KHILILHNCQLGMTGEVSFQAANTK 83
Score = 51.9 bits (125), Expect = 2e-08
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 13/87 (14%)
Query: 444 AYKAPFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
A K L + + T E ++ P W + + A + +
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIED-GKK 59
Query: 503 SSL----------GTYTCEAVNCMGAA 519
L G + +A N AA
Sbjct: 60 HILILHNCQLGMTGEVSFQAANTKSAA 86
Score = 48.4 bits (116), Expect = 3e-07
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 19/103 (18%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPI-FGNRFR 193
+ L+ + V VG A +E+ P + + P+
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLK-------------GQPLAASPDCE 52
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
I + L + + G S A+N S A L V+
Sbjct: 53 IIEDGKKHILILHNCQLGMTGEVSFQAANTK--SAAN--LKVK 91
Score = 48.4 bits (116), Expect = 3e-07
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 19/103 (18%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPI-FGNRFR 300
+ L+ + V VG A +E+ P + + P+
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLK-------------GQPLAASPDCE 52
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
I + L + + G S A+N S A L V+
Sbjct: 53 IIEDGKKHILILHNCQLGMTGEVSFQAANTK--SAAN--LKVK 91
Score = 36.9 bits (86), Expect = 0.004
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 11/56 (19%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAA 49
P W + + A + + L G + +A N AA
Sbjct: 32 PDVHGQWKLKGQPLAASPDCEIIED-GKKHILILHNCQLGMTGEVSFQAANTKSAA 86
Score = 36.9 bits (86), Expect = 0.004
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
I + L + + G S A+N S A L V+
Sbjct: 48 SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK--SAAN--LKVK 91
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 72.4 bits (178), Expect = 2e-15
Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 743 LTNNKAPKFIEGLKSCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET 801
+ K+ F + L+ + + + TV+++ + +V W ++ Q++ S + I +
Sbjct: 10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESI 68
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L I +AD A ++C+ + C +L V
Sbjct: 69 GAKRTLTISQCSLADDAAYQCVVGGE------KCSTELFV 102
Score = 71.6 bits (176), Expect = 3e-15
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 345 QVPDAPAFIRRLHDI-AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDG 402
+ AF ++L V G + RL VE+ + ++ W +N ++++ Y + G
Sbjct: 11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVELADH-DAEVKWLKNGQEIQMSGSKYIFESIG 69
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ +S SL D + C+ CS EL V
Sbjct: 70 AKRTLTISQCSLADDAAYQCVVGGE----KCSTELFV 102
Score = 69.3 bits (170), Expect = 2e-14
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 17/92 (18%)
Query: 846 KKPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
K F ++L+ +G + L ++ +KW K+G+E++ I
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
L Y C G S L
Sbjct: 73 TLTISQCSLADDAAYQCVV----GGEKCSTEL 100
Score = 61.2 bits (149), Expect = 1e-11
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 21/106 (19%)
Query: 640 YVHVLMPKNYRKPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKP-GDV 696
+ H + F + L+ + ++ ++W K+ +E++ G
Sbjct: 4 HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSK 62
Query: 697 YQLT---GTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
Y +L +Y CV G + ST+L +++
Sbjct: 63 YIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104
Score = 55.1 bits (133), Expect = 2e-09
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 19/89 (21%)
Query: 446 KAPFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKA----------GDIF 493
K+ F K+LE + + L ++ ++ W K+ ++I+ G
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 494 ALT---ANPKDPSSLGTYTCEAVNCMGAA 519
LT + D Y C +
Sbjct: 73 TLTISQCSLAD---DAAYQCVVGGEKCST 98
Score = 53.9 bits (130), Expect = 5e-09
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 549 PAPIFIKEVE-NVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMADGL 605
+ F K++E + G L ++ + W K G + + KY + G
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELADHD--AEVKWL-KNGQEIQMSGSKYIFESIG- 69
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSG 632
++ I+ DD ++CV
Sbjct: 70 AKRTLTISQCSLADDAAYQCVVGGEKC 96
Score = 50.4 bits (121), Expect = 7e-08
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 131 QVPDAPAFIRRLHDI-AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
+ AF ++L V G + RL VE+ E+K + I S
Sbjct: 11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKN-GQEIQMS---------- 59
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
G+++ + + L I + D Y E EL V+
Sbjct: 60 GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVK 103
Score = 50.4 bits (121), Expect = 7e-08
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 238 QVPDAPAFIRRLHDI-AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF 295
+ AF ++L V G + RL VE+ E+K + I S
Sbjct: 11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKN-GQEIQMS---------- 59
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
G+++ + + L I + D Y E EL V+
Sbjct: 60 GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVK 103
Score = 38.5 bits (90), Expect = 0.001
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
G+++ + + L I + D Y E EL V+
Sbjct: 60 GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVK 103
Score = 37.4 bits (87), Expect = 0.003
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 16/59 (27%)
Query: 4 PTPQLIWYKDNKKIKA----------GDIFALT---ANPKDPSSLGTYTCEAVNCMGAA 49
++ W K+ ++I+ G LT + D Y C +
Sbjct: 43 HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLAD---DAAYQCVVGGEKCST 98
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 71.6 bits (176), Expect = 2e-15
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-----IHKIISGED 900
K + E + L G + L+C +G P P +WFK+ L + + E
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPY-VDLEH 61
Query: 901 GTCCLGIYTCEAHNCMGTTSSSAALL 926
G Y C +N + S +
Sbjct: 62 Q----GTYWCHVYNDRDSQDSKKVEI 83
Score = 68.9 bits (169), Expect = 2e-14
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD--VYQLTGTSSL-- 705
K + + G + +C VG P P QWFK+ L +Y +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQ 62
Query: 706 GSYCCVAKNVMGKAESST-QLTIEDIRN 732
G+Y C N +S ++ I+++ N
Sbjct: 63 GTYWCHVYNDRDSQDSKKVEIIIDELNN 90
Score = 58.9 bits (143), Expect = 6e-11
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 448 PFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLG 506
E L T+ L+C +G P P W+K+ + D G
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
Query: 507 TYTCEAVNCMGAAFSTSRVI 526
TY C N + S I
Sbjct: 64 TYWCHVYNDRDSQDSKKVEI 83
Score = 49.6 bits (119), Expect = 1e-07
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
+ S + SP P WF+++ +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK----------LYM 53
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ +++ Q + C ND S S +++ +
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRD-SQDSKKVEIII 85
Score = 45.8 bits (109), Expect = 2e-06
Identities = 12/81 (14%), Positives = 19/81 (23%), Gaps = 9/81 (11%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
+ G+ L W++N+ L T Y +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL-------THETKKLYMV-- 54
Query: 410 SSVSLFDSGRWTCLAENAVGR 430
V L G + C N
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDS 75
Score = 44.2 bits (105), Expect = 8e-06
Identities = 13/55 (23%), Positives = 17/55 (30%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
G P P W+K+ + D GTY C N + S I
Sbjct: 29 GSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEI 83
Score = 38.1 bits (89), Expect = 0.001
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLG 606
G E + K G++ +L+C + P P W+ N+ + + K
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHETKK--------- 50
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY 649
+ Y++ G + C + + + + N
Sbjct: 51 --LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 35.0 bits (81), Expect = 0.017
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 123
+ + + + V + G Y N+ +K
Sbjct: 42 LPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
Score = 35.0 bits (81), Expect = 0.017
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
+ + + + V + G Y N+ +K
Sbjct: 42 LPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
Score = 35.0 bits (81), Expect = 0.017
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
+ + + + V + G Y N+ +K
Sbjct: 42 LPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 72.0 bits (177), Expect = 2e-15
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
+F E LK + + EGGA L C + V P +KW L+ GD + + E
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-EGAMLE 64
Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
L G Y+C G ++SA L
Sbjct: 65 LVVRNLRPQDSGRYSCSF----GDQTTSATL 91
Score = 71.6 bits (176), Expect = 3e-15
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
F L D+ V G A L + S + W + L Y + +G +
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAA-PVKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ ++ DSGR++C G S L+V
Sbjct: 67 VRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96
Score = 71.2 bits (175), Expect = 4e-15
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
+F E LK + +S P V W + + D + +E +
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEG-AMLE 64
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFL 837
L + L D + C G TS L
Sbjct: 65 LVVRNLRPQDSGRYSCSF----GDQTTSATL 91
Score = 63.5 bits (155), Expect = 2e-12
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
RF E+LK + +G + C + P ++W N L+PGD Y L L
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
G Y C G +S LT+
Sbjct: 68 RNLRPQDSGRYSCSF----GDQTTSATLTVTA 95
Score = 60.8 bits (148), Expect = 2e-11
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
F + +++++ G +A L C + P + W V+ DKY + +G
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP--VKWCYGNNVLRPGDKYSLRQEG-AML 63
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+ + L D G + C + ++A + V
Sbjct: 64 ELVVRNLRPQDSGRYSCSFGDQT-----TSATLTV 93
Score = 54.3 bits (131), Expect = 3e-09
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
+ F + L+ + +G +L C + + P + W N ++ GD ++L
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-G 60
Query: 501 DPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
L G Y+C G +++ +
Sbjct: 61 AMLELVVRNLRPQDSGRYSCSF----GDQTTSATLT 92
Score = 53.9 bits (130), Expect = 5e-09
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 192
F L D+ V G A L + S +K + ++ + G+++
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYG-------------NNVLRPGDKY 54
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
EL +R +R D GRYS + +++ ++A L+V + +P P+
Sbjct: 55 SLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT--TSA--TLTVTA-LPSGPS 101
Score = 53.9 bits (130), Expect = 5e-09
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 299
F L D+ V G A L + S +K + ++ + G+++
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYG-------------NNVLRPGDKY 54
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
EL +R +R D GRYS + +++ ++A L+V + +P P+
Sbjct: 55 SLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT--TSA--TLTVTA-LPSGPS 101
Score = 40.4 bits (95), Expect = 3e-04
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
G++ + G+++ EL +R +R D GRYS + +++ ++A L+V + +P
Sbjct: 44 GNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT--TSA--TLTVTA-LPS 98
Query: 135 APA 137
P+
Sbjct: 99 GPS 101
Score = 32.3 bits (74), Expect = 0.17
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 16/65 (24%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
+ P + W N ++ GD ++L L G Y+C G +
Sbjct: 34 SVAAP-VKWCYGNNVLRPGDKYSLRQE-GAMLELVVRNLRPQDSGRYSCSF----GDQTT 87
Query: 52 TSRVI 56
++ +
Sbjct: 88 SATLT 92
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 74.4 bits (182), Expect = 4e-15
Identities = 29/215 (13%), Positives = 61/215 (28%), Gaps = 33/215 (15%)
Query: 538 DVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK 597
PF + + ++I E + + ++ C + S+ E
Sbjct: 3 RSPFIASVSDQHGVVYITENK------NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 56
Query: 598 YHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
I D G++I + G C A + Q S Y+ V++ S
Sbjct: 57 R-ISWDSKKGFTIPSYMIS--YAGMVFCEAKINDESYQ-SIMYIVVVVGYRIYDVVLSPS 112
Query: 658 LKAVMTDDGLVSFECKVVGFPTP--TLQWFKDNEELKPGDVYQ-----------LTGTSS 704
++ + C W + + + + S+
Sbjct: 113 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 172
Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIED 729
L G Y C A + + ++ST + + +
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207
Score = 71.4 bits (174), Expect = 5e-14
Identities = 31/194 (15%), Positives = 53/194 (27%), Gaps = 17/194 (8%)
Query: 262 LLVEIRSPTEIKCQF---DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 318
+ I C +LN ++ + + R I+ D + I
Sbjct: 19 ITENKNKTVVIPCLGSISNLNVSL---CARYPEKRFVPDGNR-ISWDSKKGFTIPSYMIS 74
Query: 319 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSP 376
G A + + V + H I + VG + L
Sbjct: 75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELN 134
Query: 377 TEIKIHWYRNDRKLEENKI---YRTQHDGNFYFIDLS-----SVSLFDSGRWTCLAENAV 428
I +W K + K+ G+ LS V+ D G +TC A + +
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194
Query: 429 GRSHCSCELSVLVP 442
S + V
Sbjct: 195 MTKKNSTFVRVHED 208
Score = 69.8 bits (170), Expect = 2e-13
Identities = 25/198 (12%), Positives = 55/198 (27%), Gaps = 23/198 (11%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSIS-PEPKVSWFR-DDQQVVESDNVKILKETLGVCH 806
+ T N+ + S VS ++ D +I ++
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK--G 65
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
I + ++ C A + + ++ + V LS G + L
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 125
Query: 867 ECKVIGVPQP--TLKWFKDGRELKAGD-IHKIISGEDGTCCL----------------GI 907
C W + + +++ + + G+ G+
Sbjct: 126 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 185
Query: 908 YTCEAHNCMGTTSSSAAL 925
YTC A + + T +S +
Sbjct: 186 YTCAASSGLMTKKNSTFV 203
Score = 67.9 bits (165), Expect = 7e-13
Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 7/192 (3%)
Query: 155 LLVEIRSPTEIKCQF---DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
+ I C +LN ++ + + R I+ D + I
Sbjct: 19 ITENKNKTVVIPCLGSISNLNVSL---CARYPEKRFVPDGNR-ISWDSKKGFTIPSYMIS 74
Query: 212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE 271
G A + + V + H I + VG + L R+
Sbjct: 75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELN 134
Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
+ F+ + + + + + + L I V R D G Y+ AS+
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194
Query: 332 GYSTAKFELSVE 343
+ V
Sbjct: 195 MTKKNSTFVRVH 206
Score = 66.7 bits (162), Expect = 2e-12
Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 1/168 (0%)
Query: 69 VPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
V + + R I+ D + I G A + + V
Sbjct: 40 VSLCARYPEKRFVPDGNR-ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 98
Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 188
+ H I + VG + L R+ + F+ + +
Sbjct: 99 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 158
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
+ + + + L I V R D G Y+ AS+ + V
Sbjct: 159 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206
Score = 62.5 bits (151), Expect = 5e-11
Identities = 20/189 (10%), Positives = 47/189 (24%), Gaps = 22/189 (11%)
Query: 358 DIAVKVGTRARLLVEIRSP-TEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
I + + + +++ + + + I S +
Sbjct: 18 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI--PSYMISY 75
Query: 417 SGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP 476
+G C A+ + V+V + L+ + L C
Sbjct: 76 AGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV 135
Query: 477 --QLIWYKDNKKIKAGDIFALTANPKDPSSL-----------------GTYTCEAVNCMG 517
W + K + + + S + G YTC A + +
Sbjct: 136 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 195
Query: 518 AAFSTSRVI 526
+++ V
Sbjct: 196 TKKNSTFVR 204
Score = 53.3 bits (127), Expect = 7e-08
Identities = 24/208 (11%), Positives = 50/208 (24%), Gaps = 35/208 (16%)
Query: 656 ESLKAVMTDDGLVSFECKV-VGFPTPTLQWFKDNEELKP-----------GDVYQLTGTS 703
+ + V C + +L + P G S
Sbjct: 15 GVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMIS 74
Query: 704 SLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVN 763
G C AK +S + + + + + +V
Sbjct: 75 YAGMVFCEAKINDESYQSIMYIVVV--------------VGYRIYDVVLSPSHGIELSVG 120
Query: 764 EEFKFTVQVSISPEPKV--SWFRDDQQVVESDNVKILKETLGVCH-------LKIHALEV 814
E+ + +W + V +T L I +
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVP 842
+DQ + C A++ S F++++
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVHED 208
Score = 42.9 bits (100), Expect = 2e-04
Identities = 25/161 (15%), Positives = 39/161 (24%), Gaps = 36/161 (22%)
Query: 5 TPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFL 64
P+ + D +I T S G CEA + S ++
Sbjct: 46 YPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105
Query: 65 DNDDVP-------------------------------FNRAQGDHPIFGNRFRAI----- 88
D P + ++ H NR
Sbjct: 106 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 165
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
+ + L I V R D G Y+ AS+ + V
Sbjct: 166 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 70.5 bits (173), Expect = 7e-15
Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 5/102 (4%)
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
S +RL + V G + W + + + ++ G
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
Y + + + D+G L V
Sbjct: 63 RKYILVVREAAPSDAGEVVFSVRGLT----SKASLIVRERSG 100
Score = 68.6 bits (168), Expect = 3e-14
Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 6/95 (6%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
+ LK+ + E F +S S W + V S + ++ L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG-RKYIL 67
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
+ +D E + L +
Sbjct: 68 VVREAAPSDAGEVVFSV----RGLTSKASLIVRER 98
Score = 64.3 bits (157), Expect = 9e-13
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 17/90 (18%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
+ LK + + EG + + EC + W G+ + + + + L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-QGRKYIL 67
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
G +S A+L
Sbjct: 68 VVREAAPSDAGEVVFSV----RGLTSKASL 93
Score = 61.3 bits (149), Expect = 1e-11
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 19/95 (20%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKV-VGFPTPTLQWFKDNEELKPGDVYQLT---GTSS 704
+ LK + +G SFEC + + W + + +Q T
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIED 729
L G + + KA L + +
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSKAS----LIVRE 97
Score = 58.2 bits (141), Expect = 1e-10
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 549 PAPI-FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
+ K ++ ++ G S EC + W G V +S ++ G
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWT-VGGKTVGSSSRFQATRQG-R 63
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSG 632
Y + + D GE +
Sbjct: 64 KYILVVREAAPSDAGEVVFSVRGLTS 89
Score = 53.2 bits (128), Expect = 1e-08
Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 13/84 (15%)
Query: 448 PFFTKELEAILTEQG-TVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
TK L+ + +G + S EC + + +W K + + F T L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ-GRKYIL 67
Query: 506 ----------GTYTCEAVNCMGAA 519
G A
Sbjct: 68 VVREAAPSDAGEVVFSVRGLTSKA 91
Score = 48.9 bits (117), Expect = 3e-07
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 19/117 (16%)
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPI- 187
S +RL + V G + + + P G +
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHE---------SASDPAMWTV--GGKTVG 51
Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
+RF+A + + L +R D G + + S A L V + P+
Sbjct: 52 SSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT--SKAS--LIV--RERSGPS 102
Score = 48.9 bits (117), Expect = 3e-07
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 19/117 (16%)
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPI- 294
S +RL + V G + + + P G +
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHE---------SASDPAMWTV--GGKTVG 51
Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
+RF+A + + L +R D G + + S A L V + P+
Sbjct: 52 SSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT--SKAS--LIV--RERSGPS 102
Score = 38.9 bits (91), Expect = 8e-04
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 76 GDHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
G + +RF+A + + L +R D G + + S A L V +
Sbjct: 46 GGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT--SKAS--LIV--RERS 99
Query: 135 APA 137
P+
Sbjct: 100 GPS 102
Score = 38.1 bits (89), Expect = 0.002
Identities = 7/58 (12%), Positives = 11/58 (18%), Gaps = 11/58 (18%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAA 49
+ +W K + + F T L G A
Sbjct: 35 ESASDPAMWTVGGKTVGSSSRFQATRQ-GRKYILVVREAAPSDAGEVVFSVRGLTSKA 91
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.2 bits (172), Expect = 9e-15
Identities = 20/102 (19%), Positives = 28/102 (27%), Gaps = 17/102 (16%)
Query: 848 PKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGEDGTC 903
P + V G P+P L+WF +G L + +
Sbjct: 5 PTITFLESPT--SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHG 62
Query: 904 CL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIE 935
CL G YT A N G + F I+
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH-FMGWPGID 103
Score = 67.5 bits (165), Expect = 9e-14
Identities = 19/96 (19%), Positives = 21/96 (21%), Gaps = 20/96 (20%)
Query: 652 PRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--------GTS 703
P V G P P LQWF + L
Sbjct: 5 PTITFLESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHG 62
Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIED 729
L G Y +AKN GK E
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 60.9 bits (148), Expect = 1e-11
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-----HDGNF 404
I L + ++ + + W+ N L E+K T+ H
Sbjct: 4 APTITFLES--PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ L + + ++G +T +A+N G+ +
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
Score = 59.8 bits (145), Expect = 4e-11
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI----LKETL 802
I L+S T + + V +P+P + WF + + ES + T
Sbjct: 2 HFAPTITFLES--PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
L++ + ++ IA N++G+
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
Score = 59.0 bits (143), Expect = 8e-11
Identities = 15/102 (14%), Positives = 22/102 (21%), Gaps = 21/102 (20%)
Query: 439 VLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
V P T + V G P P L W+ + + +
Sbjct: 1 VHFA-----PTITFLESPT--SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIH 53
Query: 499 PKDPSSL--------------GTYTCEAVNCMGAAFSTSRVI 526
+ + G YT A N G
Sbjct: 54 VTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
Score = 44.7 bits (106), Expect = 8e-06
Identities = 8/56 (14%), Positives = 15/56 (26%)
Query: 75 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
I + + L + + G Y++ A NE G +
Sbjct: 43 NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 44.7 bits (106), Expect = 8e-06
Identities = 8/56 (14%), Positives = 15/56 (26%)
Query: 182 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
I + + L + + G Y++ A NE G +
Sbjct: 43 NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 44.7 bits (106), Expect = 8e-06
Identities = 8/56 (14%), Positives = 15/56 (26%)
Query: 289 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
I + + L + + G Y++ A NE G +
Sbjct: 43 NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 44.0 bits (104), Expect = 1e-05
Identities = 11/98 (11%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG--- 607
I +E+ + + V P P ++ W+ ++ S
Sbjct: 4 APTITFLESPTS--DHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 608 -YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
++++ +++G++ +A + G + H +
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ-ISAHFM 97
Score = 43.2 bits (102), Expect = 2e-05
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 14/69 (20%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL--------------GTYTCEAVNCMG 47
G P P L W+ + + + + + G YT A N G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Query: 48 AAFSTSRVI 56
Sbjct: 87 KDEKQISAH 95
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 70.1 bits (172), Expect = 1e-14
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI----Y 396
S S P + L D V VG R + VE+ ++ W +N +L Y
Sbjct: 2 SSGSSGP--VLIVTPLEDQQVFVGDRVEMAVEVSEE-GAQVMWMKNGVELTREDSFKARY 58
Query: 397 RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
R + DG + + S V D GR+ + C EL V +
Sbjct: 59 RFKKDGKRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101
Score = 67.0 bits (164), Expect = 1e-13
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN----VKILKETLGV 804
+ L+ Q V + + V+VS +V W ++ ++ D+ + K+
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDG-KR 66
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L + D+ ++ I C +L V
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGG------QCEAELIV 97
Score = 62.4 bits (152), Expect = 5e-12
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 19/92 (20%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI---ISGEDGTC 903
+ L+ + G V + +V + W K+G EL D K +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
L G Y A L
Sbjct: 68 ILIFSDVVQEDRGRYQVIT----NGGQCEAEL 95
Score = 57.0 bits (138), Expect = 4e-10
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASD----K 597
S GP + + +E+ + +G + +V + W K GV + D +
Sbjct: 2 SSGSSGP-VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQ--VMWM-KNGVELTREDSFKAR 57
Query: 598 YHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
Y DG + + + + D G ++ + A + V +
Sbjct: 58 YRFKKDG-KRHILIFSDVVQEDRGRYQVITNGGQ-----CEAELIVEEKQ 101
Score = 56.6 bits (137), Expect = 5e-10
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 23/96 (23%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV----YQLT---GTS 703
V L+ G V +V + W K+ EL D Y+
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIED 729
L G Y + + +L +E+
Sbjct: 68 ILIFSDVVQEDRGRYQVITNG----GQCEAELIVEE 99
Score = 52.0 bits (125), Expect = 2e-08
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 15/111 (13%)
Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDH 185
S S P + L D V VG R + VE+ ++ + +
Sbjct: 2 SSGSSGP--VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKN-GVELTRE------- 51
Query: 186 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
F R+R R L V ++D GRY V + A EL VE
Sbjct: 52 DSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQ--CEA--ELIVE 98
Score = 52.0 bits (125), Expect = 2e-08
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 15/111 (13%)
Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDH 292
S S P + L D V VG R + VE+ ++ + +
Sbjct: 2 SSGSSGP--VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKN-GVELTRE------- 51
Query: 293 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
F R+R R L V ++D GRY V + A EL VE
Sbjct: 52 DSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQ--CEA--ELIVE 98
Score = 50.8 bits (122), Expect = 6e-08
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 15/86 (17%)
Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA------------ 494
LE G V + +V Q++W K+ ++ D F
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 495 -LTANPKDPSSLGTYTCEAVNCMGAA 519
L + G Y A
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGGQCEA 93
Score = 38.9 bits (91), Expect = 0.001
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 79 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
F R+R R L V ++D GRY V + A EL VE
Sbjct: 52 DSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQ--CEA--ELIVE 98
Score = 34.2 bits (79), Expect = 0.033
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 13/59 (22%)
Query: 4 PTPQLIWYKDNKKIKAGDIFA-------------LTANPKDPSSLGTYTCEAVNCMGAA 49
Q++W K+ ++ D F L + G Y A
Sbjct: 35 EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEA 93
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 69.3 bits (170), Expect = 1e-14
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
E AF ++ + V G+ A E +K+ W R + + Y +G
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERA-GVKVRWQRGGSDISASNKYGLATEG 60
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ + + V D G + +A G S +L V
Sbjct: 61 TRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 67.8 bits (166), Expect = 5e-14
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH-L 807
F + +S + F + KV W R + S+ + E G H L
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETE-RAGVKVRWQRGGSDISASNKYGLATE--GTRHTL 65
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ + ADQ + IA + L V
Sbjct: 66 TVREVGPADQGSYAVIAGSS------KVKFDLKV 93
Score = 63.5 bits (155), Expect = 2e-12
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 19/97 (19%)
Query: 842 PKHYKKPK--FLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
P+ KKP F ++ ++V ++ G E + ++W + G ++ A + + + +
Sbjct: 1 PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT- 58
Query: 899 EDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
E L G Y A G++ L
Sbjct: 59 EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDL 91
Score = 62.7 bits (153), Expect = 3e-12
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
P F K+ +V+ G+ A+ E + + W + G + AS+KY + +G
Sbjct: 7 PVSAFSKKPRSVEVAAGSPAVFEAETERAGVK--VRWQ-RGGSDISASNKYGLATEG-TR 62
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+++ + + D G + +A SS + V
Sbjct: 63 HTLTVREVGPADQGSYAVIAGSSK-----VKFDLKV 93
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 19/92 (20%)
Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
F + ++V G FE + ++W + ++ + Y L +L
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLT 66
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
GSY +A G ++ L +
Sbjct: 67 VREVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 52.7 bits (127), Expect = 1e-08
Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 19/110 (17%)
Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPI 187
E AF ++ + V G+ A E +++ Q I
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRG-------------GSDI 48
Query: 188 -FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
N++ R L +R V D G Y+V A G S KF+L V
Sbjct: 49 SASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 52.7 bits (127), Expect = 1e-08
Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 19/110 (17%)
Query: 236 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPI 294
E AF ++ + V G+ A E +++ Q I
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRG-------------GSDI 48
Query: 295 -FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
N++ R L +R V D G Y+V A G S KF+L V
Sbjct: 49 SASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 51.6 bits (124), Expect = 3e-08
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 442 PKAYKAP--FFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
P+ K P F+K+ ++ G E + ++ W + I A + + L
Sbjct: 1 PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE 59
Query: 499 PKDPSSL----------GTYTCEAVNCMGAA 519
+L G+Y A +
Sbjct: 60 -GTRHTLTVREVGPADQGSYAVIAGSSKVKF 89
Score = 39.2 bits (92), Expect = 5e-04
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
N++ R L +R V D G Y+V A G S KF+L V
Sbjct: 51 SNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 35.8 bits (83), Expect = 0.010
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 11/56 (19%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAA 49
++ W + I A + + L +L G+Y A +
Sbjct: 35 AGVKVRWQRGGSDISASNKYGLATE-GTRHTLTVREVGPADQGSYAVIAGSSKVKF 89
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 76.8 bits (189), Expect = 2e-14
Identities = 23/106 (21%), Positives = 48/106 (45%)
Query: 334 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393
+ + P FI + + V G A + + + + W+++DR+L+++
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS 526
Query: 394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
Y +++GN Y + ++ V D G +T A+N+ G L+V
Sbjct: 527 VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 76.0 bits (187), Expect = 3e-14
Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 6/129 (4%)
Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
+ S + ++ + D+ + P+FI + + F
Sbjct: 449 LPPLGRISNYSSLRKHRPQEYSIRDAFWDR-----SEAQPRFIVKPYGTEVGEGQSANFY 503
Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
+V S P V+W +DD+++ +S L I+ ++ D+ E+ A N +G
Sbjct: 504 CRVIASSPPVVTWHKDDRELKQSVKYMKRYNG-NDYGLTINRVKGDDKGEYTVRAKNSYG 562
Query: 830 QSITSCFLK 838
FL
Sbjct: 563 TKEEIVFLN 571
Score = 72.2 bits (177), Expect = 4e-13
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 840 NVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
+ +P+F+ + + EG + N C+VI P + W KD RELK +
Sbjct: 475 FWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY- 533
Query: 899 EDGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
L G YT A N GT L
Sbjct: 534 NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 64.5 bits (157), Expect = 1e-10
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 647 KNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GT 702
++ +PRF+ +G +F C+V+ P + W KD+ ELK Y
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND 537
Query: 703 SSL----------GSYCCVAKNVMGKAESSTQLTI 727
L G Y AKN G E L +
Sbjct: 538 YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 58.3 bits (141), Expect = 1e-08
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL 605
P FI + + G SA C+V+ P + W+ + ++ S KY +G
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYNG- 535
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
Y + IN ++ D GE+ A +S G K+
Sbjct: 536 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV 568
Score = 56.4 bits (136), Expect = 4e-08
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 434 SCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK----- 488
S + + F K + E + + C+V+ P + W+KD++++K
Sbjct: 470 SIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKY 529
Query: 489 ----AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
G+ + LT N G YT A N G +
Sbjct: 530 MKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 55.2 bits (133), Expect = 9e-08
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 16/119 (13%)
Query: 120 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI--RSPTEIKCQFDLNNTIPF 177
+ + P FI + + V G A + SP + D
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD------- 519
Query: 178 SFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
D + ++ L I RV+ DD G Y+V A N G L+V
Sbjct: 520 ------DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 55.2 bits (133), Expect = 9e-08
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 16/119 (13%)
Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI--RSPTEIKCQFDLNNTIPF 284
+ + P FI + + V G A + SP + D
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD------- 519
Query: 285 SFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
D + ++ L I RV+ DD G Y+V A N G L+V
Sbjct: 520 ------DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 44.8 bits (106), Expect = 1e-04
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 76 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
D + ++ L I RV+ DD G Y+V A N G L+V
Sbjct: 519 DDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 43.3 bits (102), Expect = 4e-04
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 2 GIPTPQLIWYKDNKKIK---------AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
P + W+KD++++K G+ + LT N G YT A N G
Sbjct: 508 ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI 567
Query: 53 SRVI 56
+
Sbjct: 568 VFLN 571
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 72.1 bits (176), Expect = 2e-14
Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 24/181 (13%)
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
A + + T + P SW + + L ++ + ++
Sbjct: 13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNEHS 68
Query: 820 WKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV---PQP 876
+ C AT + + +++ + K P+ L L G + ++C V V +
Sbjct: 69 YLCTATCESRKLEKG--IQVEIYSFPKDPEI--HLSGPLEAGKPITVKCSVADVYPFDRL 124
Query: 877 TLKWFKDGRELKAGDIHKII---SGEDGTCCL----------GIYTCEAHNCMGTTSSSA 923
+ K +K+ + + S E + + + C A + S
Sbjct: 125 EIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP 184
Query: 924 A 924
Sbjct: 185 T 185
Score = 66.3 bits (161), Expect = 2e-12
Identities = 28/180 (15%), Positives = 45/180 (25%), Gaps = 34/180 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
VS C G +P W + G V TS+L SY C A
Sbjct: 19 VSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR 78
Query: 718 KAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS-ISP 776
K E Q+ I PK E S + V+ + P
Sbjct: 79 KLEKGIQVEI------------------YSFPKDPEIHLSGPLEAGKPITVKCSVADVYP 120
Query: 777 EPK--VSWFRDDQQVVESDNVKILKETL---GVCHLKIHALEVADQAEWKCIATNDFGQS 831
+ + + D + + ++ + + C A +
Sbjct: 121 FDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM 180
Score = 65.9 bits (160), Expect = 3e-12
Identities = 20/183 (10%), Positives = 43/183 (23%), Gaps = 23/183 (12%)
Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG 418
++G L W K+ ++ VS +
Sbjct: 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLT---MNPVSFGNEH 67
Query: 419 RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMG---IPT 475
+ C A + ++ + L L ++++C V
Sbjct: 68 SYLCTATCESRKLEKGIQVEIYSFP----KDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123
Query: 476 PQLIWYKDNKKIKAGDIF-------------ALTANPKDPSSLGTYTCEAVNCMGAAFST 522
++ K + +K+ + +T P C A + S
Sbjct: 124 LEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183
Query: 523 SRV 525
V
Sbjct: 184 PTV 186
Score = 64.8 bits (157), Expect = 7e-12
Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 21/203 (10%)
Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIR 313
++ +R L +I + C + FS+R Q D P+ G + N + L +
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMN 59
Query: 314 RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL---L 370
V + Y TA+ ES ++ ++ P ++ G + +
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQV----EIYSFPKDPEIHLSGPLEAGKPITVKCSV 115
Query: 371 VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF----IDLSSVSLFDSGRWTCLAEN 426
++ ++I + D ++ + + + + V C A+
Sbjct: 116 ADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKL 175
Query: 427 AVGR-------SHCSCELSVLVP 442
+ EL V +
Sbjct: 176 HIDEMDSVPTVRQAVKELQVYIS 198
Score = 56.7 bits (136), Expect = 5e-09
Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 31/198 (15%)
Query: 453 ELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF------ALTANPKDPSSLG 506
E + +VSL C G +P W G + LT NP +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 507 TYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGT 566
+Y C A +V + P ++ G
Sbjct: 68 SYLCTATCESRKLEKGIQVE------------IYSFPKDPEIHLSGPLEA--------GK 107
Query: 567 SAILECQVL-VPPWPR-SIYWYNKEGVVEASDKYHIMADG-LGGYSIEINYLEAVDD--G 621
++C V V P+ R I + ++++ + L S+E+ + ++D
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167
Query: 622 EWKCVATSSSGVKQFSAA 639
C A
Sbjct: 168 VLVCRAKLHIDEMDSVPT 185
Score = 49.4 bits (117), Expect = 1e-06
Identities = 34/183 (18%), Positives = 53/183 (28%), Gaps = 31/183 (16%)
Query: 73 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
R Q D P+ G + N + L + V + Y TA+ ES ++ ++
Sbjct: 36 RTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV----EI 88
Query: 133 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRA----QGDHPIF 188
P ++ G P +KC + PF +GDH +
Sbjct: 89 YSFPKDPEIHLSGPLEAG----------KPITVKCSVA--DVYPFDRLEIDLLKGDHLMK 136
Query: 189 GNRFRAINRDGRTE-----LNIRRVRRDDGGRYSVTASN---ESGYSTAKFELSVESQVP 240
F E + V D G A E + E QV
Sbjct: 137 SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196
Query: 241 DAP 243
+P
Sbjct: 197 ISP 199
Score = 47.1 bits (111), Expect = 8e-06
Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 19/108 (17%)
Query: 853 ELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL------- 905
E + + G +V+L C G P W ++ ++ E T L
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSP----LNGKVTNEGTTSTLTMNPVSF 63
Query: 906 ---GIYTCEAHNCMGTTSSSAAL-----LGFEDKSQIEKAEEGKKALI 945
Y C A + + E GK +
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITV 111
Score = 37.4 bits (86), Expect = 0.013
Identities = 29/173 (16%), Positives = 41/173 (23%), Gaps = 38/173 (21%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF------ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
G +P W G + LT NP + +Y C A +V
Sbjct: 27 GCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86
Query: 56 ---------IARGQQSFLDNDDV----------PFNRAQ-----GDHPIFGNRFRAINRD 91
+ PF+R + GDH + F
Sbjct: 87 EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR 146
Query: 92 GRTE-----LNIRRVRRDDGGRYSVTASN---ESGYSTAKFELSVESQVPDAP 136
E + V D G A E + E QV +P
Sbjct: 147 KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 199
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 68.9 bits (169), Expect = 2e-14
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH- 806
+ L+ A E + +VS + V WF++ ++++ + G H
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
L I AD AE+ + T +S L +++
Sbjct: 66 LIIEGATKADAAEYSVMTTGGQ----SSAKLSVDLK 97
Score = 68.1 bits (167), Expect = 5e-14
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYF 406
++L D G R L E+ + + W++N ++ YR + +G +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSED-DANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ + + D+ ++ + S +LSV +
Sbjct: 66 LIIEGATKADAAEYSVMTTGG----QSSAKLSVDLK 97
Score = 64.3 bits (157), Expect = 9e-13
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
++L+ G V LEC+V +KWFK+G E+ G + +G +
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
Y+ SSA L
Sbjct: 67 IIEGATKADAAEYSVMT----TGGQSSAKL 92
Score = 55.8 bits (135), Expect = 9e-10
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVV---EASDKYHIMADGL 605
+ K++E+ A G LEC+V ++ W+ K G +Y I +G
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEVSEDD-A-NVKWF-KNGEEIIPGPKSRYRIRVEG- 61
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+ + I D E+ + T S+A + V
Sbjct: 62 KKHILIIEGATKADAAEYSVMTTGGQ-----SSAKLSV 94
Score = 52.7 bits (127), Expect = 1e-08
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL 705
+ L+ G V EC+V ++WFK+ EE+ PG + L
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIED 729
Y + +SS +L+++
Sbjct: 67 IIEGATKADAAEYSVMTTG----GQSSAKLSVDL 96
Score = 50.8 bits (122), Expect = 6e-08
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
++L D G R L E+ +K + I ++ R+R
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKN-GEEIIPGPKS---------RYR 56
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 240
+ L I + D YSV + S+AK LSV+ +
Sbjct: 57 IRVEGKKHILIIEGATKADAAEYSVMTTGGQ--SSAK--LSVDLKSG 99
Score = 50.8 bits (122), Expect = 6e-08
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
++L D G R L E+ +K + I ++ R+R
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKN-GEEIIPGPKS---------RYR 56
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 347
+ L I + D YSV + S+AK LSV+ +
Sbjct: 57 IRVEGKKHILIIEGATKADAAEYSVMTTGGQ--SSAK--LSVDLKSG 99
Score = 49.2 bits (118), Expect = 2e-07
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDIFA 494
TK+LE G V LEC+V + W+K+ ++I G
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAA 519
L + Y+ +A
Sbjct: 66 LIIEGATKADAAEYSVMTTGGQSSA 90
Score = 38.8 bits (91), Expect = 0.001
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 84 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
R+R + L I + D YSV + S+AK LSV+ +
Sbjct: 54 RYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ--SSAK--LSVDLKSG 99
Score = 33.5 bits (77), Expect = 0.064
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 11/57 (19%)
Query: 4 PTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSLGTYTCEAVNCMGAA 49
+ W+K+ ++I G L + Y+ +A
Sbjct: 34 DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSA 90
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 70.6 bits (173), Expect = 3e-14
Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 33/189 (17%)
Query: 748 APKFIEGLKSCQATV--NEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGV 804
PK + L+ V + T Q + SPE + WF + +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------- 51
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAV 864
D E+ C + S + L V ++ L+ EG +
Sbjct: 52 -PSYRFKANNNDSGEYTCQTGQ----TSLSDPVHLTV--LFE-WLVLQTPHLEFQEGETI 103
Query: 865 NLECKVI-GVPQPTLKWFKDGRELKAGD------IHKIISGEDGTCCLGIYTCEAHNCMG 917
L C P + +F++G+ K I + + G Y C +
Sbjct: 104 MLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQA-NHSHS----GDYHCTGNIGYT 158
Query: 918 TTSSSAALL 926
SS +
Sbjct: 159 LFSSKPVTI 167
Score = 67.9 bits (166), Expect = 3e-13
Identities = 29/154 (18%), Positives = 44/154 (28%), Gaps = 25/154 (16%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
SP I W+ N + H Y + DSG +TC
Sbjct: 31 SPESDSIQWFHNGNLIPT-------HTQPSY---RFKANNNDSGEYTCQTGQTSL--SDP 78
Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIK---AG 490
L+VL + E T+ L C P ++ ++++ K K
Sbjct: 79 VHLTVLFE-----WLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD 133
Query: 491 DIFALT-ANPKDPSSLGTYTCEAVNCMGAAFSTS 523
F++ AN G Y C S
Sbjct: 134 PTFSIPQANHSHS---GDYHCTGNIGYTLFSSKP 164
Score = 63.7 bits (155), Expect = 1e-11
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 28/186 (15%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGG 607
P + E + S L CQ P SI W+ N + + +
Sbjct: 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYR------- 55
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
+ N D GE+ C +S ++ VL + +++ +
Sbjct: 56 FKANNN-----DSGEYTCQTGQTSLSD---PVHLTVL-----FEWLVLQTPHLEFQEGET 102
Query: 668 VSFECKVV-GFPTPTLQWFKDNEELKP---GDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
+ C P + +F++ + K + + + G Y C S
Sbjct: 103 IMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTL-FS 161
Query: 722 STQLTI 727
S +TI
Sbjct: 162 SKPVTI 167
Score = 59.8 bits (145), Expect = 2e-10
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 22/134 (16%)
Query: 304 RDGR------TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
+G + +D G Y+ + S L+V + + +
Sbjct: 41 HNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQ-TSLSDP-VHLTVLFEWL-----VLQTP 93
Query: 358 DIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
+ + G L +K+ +++N + + H + I +
Sbjct: 94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ------KFSHLDPTFSI--PQANHSH 145
Query: 417 SGRWTCLAENAVGR 430
SG + C
Sbjct: 146 SGDYHCTGNIGYTL 159
Score = 57.1 bits (138), Expect = 2e-09
Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 38/184 (20%)
Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIKA--GDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
+V+L C+ P I W+ + I + AN D G YTC+ +
Sbjct: 21 SVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDS---GEYTCQTGQ---TS 74
Query: 520 FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPW 579
S + V F L+ P F + G + +L C
Sbjct: 75 LSDPVHL-----------TVLFEWLVLQTPHLEF---------QEGETIMLRCHSWKDKP 114
Query: 580 PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
+ ++ + G + I G++ C +
Sbjct: 115 LVKVTFF-QNGK--------SQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPV 165
Query: 640 YVHV 643
+ V
Sbjct: 166 TITV 169
Score = 47.5 bits (113), Expect = 3e-06
Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 30/146 (20%)
Query: 4 PTPQLIWYKDNKKIKA--GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS-------- 53
+ + W+ + I + AN D G YTC+ + S
Sbjct: 33 ESDSIQWFHNGNLIPTHTQPSYRFKANNNDS---GEYTCQTGQ---TSLSDPVHLTVLFE 86
Query: 54 -RVIARGQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRT--------ELNIRRVRR 103
V+ F + + + + D P+ F ++G++ +I +
Sbjct: 87 WLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFF---QNGKSQKFSHLDPTFSIPQANH 143
Query: 104 DDGGRYSVTASNESG-YSTAKFELSV 128
G Y T + +S+ ++V
Sbjct: 144 SHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 44.4 bits (105), Expect = 4e-05
Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 33/154 (21%)
Query: 90 RDGR------TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
+G + +D G Y+ + S L+V + + +
Sbjct: 41 HNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQ-TSLSDP-VHLTVLFEWL-----VLQTP 93
Query: 144 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
+ + G L +K F N F
Sbjct: 94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK-SQKFSHLDP-----------------T 135
Query: 203 LNIRRVRRDDGGRYSVTASNESG-YSTAKFELSV 235
+I + G Y T + +S+ ++V
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 44.4 bits (105), Expect = 4e-05
Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 33/154 (21%)
Query: 197 RDGR------TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
+G + +D G Y+ + S L+V + + +
Sbjct: 41 HNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQ-TSLSDP-VHLTVLFEWL-----VLQTP 93
Query: 251 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
+ + G L +K F N F
Sbjct: 94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK-SQKFSHLDP-----------------T 135
Query: 310 LNIRRVRRDDGGRYSVTASNESG-YSTAKFELSV 342
+I + G Y T + +S+ ++V
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 38.6 bits (90), Expect = 0.003
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 2 GIPTPQLIWYKDNKKIK---AGDIFALT-ANPKDPSSLGTYTCEAVNCMGAAFSTS 53
P ++ ++++ K K F++ AN G Y C S
Sbjct: 112 DKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHS---GDYHCTGNIGYTLFSSKP 164
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 71.8 bits (176), Expect = 4e-14
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 22/119 (18%)
Query: 818 AEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPT 877
A + ++ + H PK + EG VN+ C+V P T
Sbjct: 1 ATYAAASSALVPR-----------GSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49
Query: 878 LKWFKDGRELKAGDIHKI-ISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
+ WF+DG+ L + + I I L G Y C A N +G S L
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Score = 67.5 bits (165), Expect = 1e-12
Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 26/134 (19%)
Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
+Y + ++ + APK +G + +
Sbjct: 1 ATYAAASSALVPRGSHMY------------------------APKL-QGPVAVYTWEGNQ 35
Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIA 824
T +V P +SWFRD Q + S+ I + T +L++ D + C A
Sbjct: 36 VNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95
Query: 825 TNDFGQSITSCFLK 838
N GQ L
Sbjct: 96 VNRIGQESLEFILV 109
Score = 67.2 bits (164), Expect = 1e-12
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 621 GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTP 680
+ +++ A P+ + + V+ C+V +P+
Sbjct: 1 ATYAAASSALVPRGSHMYA------------PKLQGPVAVYTWEGNQVNITCEVFAYPSA 48
Query: 681 TLQWFKDNEELKPGD-----VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQL 725
T+ WF+D + L + +Y S L G+Y C A N +G+ L
Sbjct: 49 TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Query: 726 TIED 729
D
Sbjct: 109 VQAD 112
Score = 62.9 bits (153), Expect = 4e-11
Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 13/124 (10%)
Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 380
Y+ +S V ++ + G + + E+ +
Sbjct: 1 ATYAAASSA-----------LVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDL--SSVSLFDSGRWTCLAENAVGRSHCSCELS 438
I W+R+ + L + + L + S D G + C A N +G+ L
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Query: 439 VLVP 442
Sbjct: 110 QADT 113
Score = 62.5 bits (152), Expect = 5e-11
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ 477
+ + V R S + P + E V++ C+V P+
Sbjct: 1 ATYAAASSALVPR------GSHMYA-----PKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49
Query: 478 LIWYKDNKKIKAGDIFALT-ANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
+ W++D + + + + + N S L G Y C AVN +G ++
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Score = 58.7 bits (142), Expect = 9e-10
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 107 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTE 164
Y+ +S V ++ + G + + E+ +
Sbjct: 1 ATYAAASSA-----------LVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49
Query: 165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 224
I D +P S + + N + L + +D G Y+ TA N
Sbjct: 50 ISWFRD-GQLLPSSNYS---------NIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI 99
Query: 225 GYSTAKFELSVESQVPDAP 243
G + +F L P +P
Sbjct: 100 GQESLEFILVQAD-TPSSP 117
Score = 58.7 bits (142), Expect = 9e-10
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTE 271
Y+ +S V ++ + G + + E+ +
Sbjct: 1 ATYAAASSA-----------LVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49
Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
I D +P S + + N + L + +D G Y+ TA N
Sbjct: 50 ISWFRD-GQLLPSSNYS---------NIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI 99
Query: 332 GYSTAKFELSVESQVPDAP 350
G + +F L P +P
Sbjct: 100 GQESLEFILVQAD-TPSSP 117
Score = 52.9 bits (127), Expect = 9e-08
Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 29/134 (21%)
Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
TY + + + + P ++ V G
Sbjct: 1 ATYAAASSALVPRG----------------------SHMYAP-----KLQGPVAVYTWEG 33
Query: 566 TSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI-EINYLEAVDDGEWK 624
+ C+V P +I W+ ++ +S+ +I S E+ D G +
Sbjct: 34 NQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92
Query: 625 CVATSSSGVKQFSA 638
C A + G +
Sbjct: 93 CTAVNRIGQESLEF 106
Score = 52.1 bits (125), Expect = 2e-07
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 18/118 (15%)
Query: 36 GTYTCEAVNCMGAAFSTSRVIARG--QQSFLDNDDVPFN-RAQGDHPI------------ 80
TY + + +G + + V
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLP 60
Query: 81 FGN--RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
N + N + L + +D G Y+ TA N G + +F L P +P
Sbjct: 61 SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD-TPSSP 117
Score = 41.3 bits (97), Expect = 6e-04
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIFALT-ANPKDPSSL----------GTYTCEAVNCMGAA 49
P+ + W++D + + + + + N S L G Y C AVN +G
Sbjct: 43 FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE 102
Query: 50 FSTSRVI 56
++
Sbjct: 103 SLEFILV 109
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 70.4 bits (172), Expect = 7e-14
Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 23/191 (12%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--------------VVEASDKYHIMAD 603
V +G S L + I W E + + K +
Sbjct: 6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLN 65
Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
YS++++ L+ D G ++ ++ + K S + + + R + +
Sbjct: 66 FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS---YTLRILRQLRNIQVTNHSQLFQN 122
Query: 664 DDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQL---TGTSSLGSYCCVAKNVMGKA 719
+ C V + +W L + SS Y C+A+N +
Sbjct: 123 MTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVS-- 180
Query: 720 ESSTQLTIEDI 730
S ++ + +
Sbjct: 181 NLSFSVSAQKL 191
Score = 55.0 bits (132), Expect = 2e-08
Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
L++ L++ D ++ + ++S L + + + + + + ++L
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSS--YTLRILRQLRNIQVTNHSQLFQNMTCELHL 129
Query: 867 ECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSS 922
C V + +W G L + + +S + YTC A N + S S
Sbjct: 130 TCSVEDADDNVSFRWEALGNTLSSQP-NLTVSWDPRISSEQDYTCIAENAVSNLSFS 185
Score = 55.0 bits (132), Expect = 2e-08
Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 22/172 (12%)
Query: 361 VKVGTRARLLVEIRSPTEIK-IHWYRNDRKL----------------EENKIYRTQHDGN 403
+G L +E + ++ I W N+ L + R +
Sbjct: 10 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT 463
Y + LS++ + D+G + S L +L + T +
Sbjct: 70 -YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ--LRNIQVTNHSQLFQNMTCE 126
Query: 464 VSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
+ L C V W + + ++ +P+ SS YTC A N
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRI-SSEQDYTCIAEN 177
Score = 52.3 bits (125), Expect = 1e-07
Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 19/194 (9%)
Query: 254 VKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGDHPIF---GNRFRAINRDGR 307
+G L +E + ++ F+ + I + + +N
Sbjct: 10 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 367
L + ++ +D G Y S ++ + + L + Q+ + + + +
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN--IQVTNHSQLFQNMTCEL 127
Query: 368 RLLVEIRSPTE-IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426
L + + + W L D + +TC+AEN
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWD----------PRISSEQDYTCIAEN 177
Query: 427 AVGRSHCSCELSVL 440
AV S L
Sbjct: 178 AVSNLSFSVSAQKL 191
Score = 37.7 bits (87), Expect = 0.009
Identities = 22/203 (10%), Positives = 54/203 (26%), Gaps = 29/203 (14%)
Query: 147 VKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGDHPIF---GNRFRAINRDGR 200
+G L +E + ++ F+ + I + + +N
Sbjct: 10 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
L + ++ +D G Y S ++ + + L + Q+ + + + +
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN--IQVTNHSQLFQNMTCEL 127
Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIR-RVRRDD 319
L + + + F + A G+ L + R
Sbjct: 128 HLTCSVEDADD---------NVSFRWEALGNTLSSQPN-----------LTVSWDPRISS 167
Query: 320 GGRYSVTASNESGYSTAKFELSV 342
Y+ A N +
Sbjct: 168 EQDYTCIAENAVSNLSFSVSAQK 190
Score = 36.5 bits (84), Expect = 0.023
Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 23/141 (16%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
L + ++ +D G Y S ++ + + L + Q+ + + + + L
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN--IQVTNHSQLFQNMTCELHL 129
Query: 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIR-RVRRDDGG 214
+ + + F + A G+ L + R
Sbjct: 130 TCSVEDADD---------NVSFRWEALGNTLSSQPN-----------LTVSWDPRISSEQ 169
Query: 215 RYSVTASNESGYSTAKFELSV 235
Y+ A N +
Sbjct: 170 DYTCIAENAVSNLSFSVSAQK 190
Score = 32.3 bits (73), Expect = 0.53
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 44
W + + ++ +P+ SS YTC A N
Sbjct: 136 ADDNVSFRWEALGNTLSSQPNLTVSWDPRI-SSEQDYTCIAEN 177
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 67.4 bits (165), Expect = 9e-14
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 344 SQVPDAPAFIRR---LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH 400
S P I + R L E+ + WY++ +K+EE+++ +
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRV-DFPATWYKDGQKVEESELLVVKM 60
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
DG + + L + DSG + C E ++V P
Sbjct: 61 DGRKHRLILPEAKVQDSGEFECRTEGV----SAFFGVTVQDPSG 100
Score = 65.9 bits (161), Expect = 3e-13
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 748 APKFI---EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
P I + S T +E T ++S + +W++D Q+V ES+ + + +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELS-RVDFPATWYKDGQKVEESELLVVKMDG-RK 64
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
L + +V D E++C + + P
Sbjct: 65 HRLILPEAKVQDSGEFECRTEGVS----AFFGVTVQDPS 99
Score = 60.5 bits (147), Expect = 2e-11
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 24/107 (22%)
Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
G S +S P H P+ L V L C++ W+KDG++++
Sbjct: 1 GSSGSSG------PVHILSPQDKVSLTFT--TSERVVLTCELSR-VDFPATWYKDGQKVE 51
Query: 889 AGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
++ + + L G + C S+ +
Sbjct: 52 ESELLVVKM-DGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGV 93
Score = 59.7 bits (145), Expect = 5e-11
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 550 APIFI---KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGL 605
P+ I ++ ++ +L C++ +P WY K+G VE S+ + DG
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP--ATWY-KDGQKVEESELLVVKMDG- 62
Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
+ + + + D GE++C S + V V P
Sbjct: 63 RKHRLILPEAKVQDSGEFECRTEGVS-----AFFGVTVQDPS 99
Score = 50.1 bits (120), Expect = 1e-07
Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 18/75 (24%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSYCCVAKN 714
V C++ W+KD ++++ ++ + L G + C +
Sbjct: 28 VVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86
Query: 715 VMGKAESSTQLTIED 729
+ +T++D
Sbjct: 87 ----VSAFFGVTVQD 97
Score = 44.3 bits (105), Expect = 1e-05
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 15/85 (17%)
Query: 448 PFFTKELEAI---LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
+ + T V L C++ WYKD +K++ ++ + +
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMD-GRKHR 66
Query: 505 L----------GTYTCEAVNCMGAA 519
L G + C
Sbjct: 67 LILPEAKVQDSGEFECRTEGVSAFF 91
Score = 42.0 bits (99), Expect = 7e-05
Identities = 17/119 (14%), Positives = 26/119 (21%), Gaps = 24/119 (20%)
Query: 130 SQVPDAPAFIRR---LHDIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDH 185
S P I + R L E+ D
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKD-------------GQ 48
Query: 186 PI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
+ + L + + D G + S A F ++V Q P P
Sbjct: 49 KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVTV--QDPSGP 101
Score = 42.0 bits (99), Expect = 7e-05
Identities = 17/119 (14%), Positives = 26/119 (21%), Gaps = 24/119 (20%)
Query: 237 SQVPDAPAFIRR---LHDIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDH 292
S P I + R L E+ D
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKD-------------GQ 48
Query: 293 PI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
+ + L + + D G + S A F ++V Q P P
Sbjct: 49 KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVTV--QDPSGP 101
Score = 39.3 bits (92), Expect = 7e-04
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 6/55 (10%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
+ L + + D G + S A F ++V Q P P
Sbjct: 53 SELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVTV--QDPSGP 101
Score = 35.1 bits (81), Expect = 0.019
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 11/56 (19%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAA 49
WYKD +K++ ++ + + L G + C
Sbjct: 37 VDFPATWYKDGQKVEESELLVVKMD-GRKHRLILPEAKVQDSGEFECRTEGVSAFF 91
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 67.4 bits (165), Expect = 9e-14
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
K + QA + +V+ + +V+W++D +++ S V++ L
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVG-CTRRLV 69
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ A+ E+ C A +L V
Sbjct: 70 VQQAGQAEAGEYSCEAGGQ------QLSFRLQV 96
Score = 63.6 bits (155), Expect = 2e-12
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
++ + G A L E+ + ++ WY++ +KL + R + G + +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQA-QTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
++G ++C A G S L V
Sbjct: 71 QQAGQAEAGEYSCEA----GGQQLSFRLQV 96
Score = 63.2 bits (154), Expect = 2e-12
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 23/107 (21%)
Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
G S +S K+ K + ++ G + L C+V Q + W+KDG++L
Sbjct: 1 GSSGSSG--KVVFAKEQPAHREVQ-----AEAGASATLSCEV-AQAQTEVTWYKDGKKLS 52
Query: 889 AGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
+ ++ + T L G Y+CEA G S L
Sbjct: 53 SSSKVRVEA-VGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRL 94
Score = 55.5 bits (134), Expect = 1e-09
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADG 604
V+A+ G SA L C+V + WY K+G + +S K + A G
Sbjct: 7 GKVVFAKEQPAHREVQAEAGASATLSCEVAQAQ-T-EVTWY-KDGKKLSSSSKVRVEAVG 63
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSG 632
+ + + GE+ C A
Sbjct: 64 -CTRRLVVQQAGQAEAGEYSCEAGGQQL 90
Score = 55.1 bits (133), Expect = 2e-09
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 19/92 (20%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
+ + + V + G + C+V + W+KD ++L ++ T L
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
G Y C A G + S +L +
Sbjct: 71 QQAGQAEAGEYSCEA----GGQQLSFRLQVAG 98
Score = 47.8 bits (114), Expect = 7e-07
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 19/101 (18%)
Query: 429 GRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKI 487
G S S ++ + E G + +L C+V ++ WYKD KK+
Sbjct: 1 GSSGSSGKVVF--------AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKL 51
Query: 488 KAGDIFALTANPK---------DPSSLGTYTCEAVNCMGAA 519
+ + A + G Y+CEA +
Sbjct: 52 SSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSF 92
Score = 43.2 bits (102), Expect = 3e-05
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 19/105 (18%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 193
++ + G A L E+ E+ D + ++ R
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKD-------------GKKLSSSSKVR 58
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
L +++ + + G YS A + F L V Q
Sbjct: 59 VEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ----LSFRLQVAGQ 99
Score = 43.2 bits (102), Expect = 3e-05
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 19/105 (18%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
++ + G A L E+ E+ D + ++ R
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKD-------------GKKLSSSSKVR 58
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
L +++ + + G YS A + F L V Q
Sbjct: 59 VEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ----LSFRLQVAGQ 99
Score = 38.2 bits (89), Expect = 0.002
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
++ R L +++ + + G YS A + F L V Q
Sbjct: 54 SSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ----LSFRLQVAGQ 99
Score = 37.4 bits (87), Expect = 0.003
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLGTYTCEAVNCMGAA 49
++ WYKD KK+ + + A + G Y+CEA +
Sbjct: 38 AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSF 92
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 67.5 bits (165), Expect = 1e-13
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 17/97 (17%)
Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-------------- 891
P+ +E ++S+G L CK G P PT++W+K G ++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 892 --IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
+I+ G G+Y C A N +G S A L
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
Score = 64.4 bits (157), Expect = 1e-12
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD-------------- 491
P + ++ +G +L CK G PTP + WYK ++++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 492 --IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
+ K G Y C A N +G A S
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102
Score = 57.5 bits (139), Expect = 4e-10
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 22/99 (22%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-----YQLTGTSS 704
PR VE ++ G + CK G PTPT++W+K E ++ L + S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 705 L---------------GSYCCVAKNVMGKAESST-QLTI 727
L G Y CVA+N +G+A S L +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 55.6 bits (134), Expect = 2e-09
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH-- 400
+ P P + D+ V G A L + I WY+ ++E +K H
Sbjct: 5 QEDFP--PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 401 ---DGNFYF--IDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVP 442
G+ +F I S D G + C+A N +G + L V
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
Score = 53.3 bits (128), Expect = 1e-08
Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 7/113 (6%)
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-----VK 796
L + P+ +E + E + P P + W++ ++V +
Sbjct: 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 797 ILKE-TLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKK 847
+L +L + D+ + C+A N G++++ L++ H+
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 46.0 bits (109), Expect = 4e-06
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 2 GIPTPQLIWYKDNKKIKAGD----------------IFALTANPKDPSSLGTYTCEAVNC 45
G PTP + WYK ++++ + K G Y C A N
Sbjct: 35 GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94
Query: 46 MGAAFSTS 53
+G A S
Sbjct: 95 LGEAVSHD 102
Score = 44.8 bits (106), Expect = 1e-05
Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK------YHIMAD 603
P ++ ++ G A L C+ P P I WY K G +DK ++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-IEWY-KGGERVETDKDDPRSHRMLLPS 66
Query: 604 G-LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFV 655
G L I D+G + CVA + G A + V
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA-----AHHH 114
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 67.4 bits (165), Expect = 1e-13
Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 16/93 (17%)
Query: 847 KPKFLEELK----AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGT 902
PK + G +NL G P+P + W K G L +H + D
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVH--VRTSDFD 78
Query: 903 CCL----------GIYTCEAHNCMGTTSSSAAL 925
G Y +++ +
Sbjct: 79 TVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
Score = 62.8 bits (153), Expect = 6e-12
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 21/128 (16%)
Query: 113 ASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIR-SPT-EIKC 167
+S SG + + + P H KVG + L+V + P ++
Sbjct: 2 SSGSSGTLAQPVTIRE---IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58
Query: 168 QFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS 227
P+ +R D T +R+ R D G Y ++ E+
Sbjct: 59 TKG-------------GAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKD 105
Query: 228 TAKFELSV 235
TA + V
Sbjct: 106 TATIRIRV 113
Score = 62.8 bits (153), Expect = 6e-12
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 21/128 (16%)
Query: 220 ASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIR-SPT-EIKC 274
+S SG + + + P H KVG + L+V + P ++
Sbjct: 2 SSGSSGTLAQPVTIRE---IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58
Query: 275 QFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS 334
P+ +R D T +R+ R D G Y ++ E+
Sbjct: 59 TKG-------------GAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKD 105
Query: 335 TAKFELSV 342
TA + V
Sbjct: 106 TATIRIRV 113
Score = 60.9 bits (148), Expect = 2e-11
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--GTSSL----------GSYCCVAKNV 715
++ G P P + W K L V+ T + G Y +
Sbjct: 42 LNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIE 101
Query: 716 MGKAESSTQLTIED 729
K ++ ++ + +
Sbjct: 102 NMKDTATIRIRVVE 115
Score = 59.3 bits (144), Expect = 9e-11
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIR-SPTEIKIH 382
+S SG + + + P H KVG + L+V + P ++
Sbjct: 2 SSGSSGTLAQPVTIRE---IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPR-PQVV 57
Query: 383 WYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
W + L+ ++++ D + + + DSG + + + + + V+
Sbjct: 58 WTKGGAPLDTSRVHVRTSDFD-TVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 57.0 bits (138), Expect = 6e-10
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
G P+ +R D T +R+ R D G Y ++ E+ TA + V
Sbjct: 61 GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 54.7 bits (132), Expect = 3e-09
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 748 APKFI---EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
PK ++ V E+ V P P+V W + +++ V + + +
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP-LDTSRVHV-RTSDFD 78
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
+ +D E++ + + + ++
Sbjct: 79 TVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 54.3 bits (131), Expect = 5e-09
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 16/110 (14%)
Query: 431 SHCSCELSVLVPKAYKAPFFTKELE---AILTEQG-TVSLECKVMGIPTPQLIWYKDNKK 486
S + V + + + P + + G ++L G P PQ++W K
Sbjct: 5 SSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64
Query: 487 IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
+ + + G Y +T R+
Sbjct: 65 LDTSRVH--VRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 40.8 bits (96), Expect = 2e-04
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 12/65 (18%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
G P PQ++W K + + + G Y +
Sbjct: 50 GKPRPQVVWTKGGAPLDTSRVH--VRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTA 107
Query: 52 TSRVI 56
T R+
Sbjct: 108 TIRIR 112
Score = 39.3 bits (92), Expect = 0.001
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
+ K+G L P P+ + W K G + + H+ +
Sbjct: 32 QTYIRKVGEQLNLVVPFQGKPRPQ-VVWT-KGGAPLDTSRVHVRTSD-FDTVFFVRQAAR 88
Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVL 644
D GE++ + + + V+
Sbjct: 89 SDSGEYELSVQIENMKDTAT-IRIRVV 114
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 69.6 bits (170), Expect = 2e-13
Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 34/202 (16%)
Query: 557 VENVKAKIGTSAILECQVLVPPWPRS---IYWYN--------KEGVVEASDKYH--IMAD 603
V +V ++ A L C V + IYW G + +Y + D
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60
Query: 604 GLGGYSIEINYLEAVDDGEWKCVATS--SSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
SI I L D+G ++CV K+ A V + + ++ P +
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF---E 117
Query: 662 MTDDGLVSFECKVVG-FPTPTLQWFKDNEELKP----------GDVYQLTGT-----SSL 705
+ + C G FP P L W ++ EEL ++Y ++ ++
Sbjct: 118 IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTN 177
Query: 706 GSYCCVAKNVMGKAESSTQLTI 727
S+ C+ K + +
Sbjct: 178 HSFMCLIKYGHLRVNQTFNWNT 199
Score = 59.6 bits (144), Expect = 4e-10
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 28/173 (16%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE----------TLGVCHLKIHALEVAD 816
V V + ++ W ++ + V+ + + + I AL +D
Sbjct: 17 GHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSD 76
Query: 817 QAEWKCIATNDFGQS---ITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV 873
+ ++C+ + + L+V + P + + + C G
Sbjct: 77 EGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF---EIPTSNIRRIICSTSGG 133
Query: 874 -PQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTCEAHN 914
P+P L W ++G EL A + E + + C
Sbjct: 134 FPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKY 186
Score = 56.9 bits (137), Expect = 4e-09
Identities = 24/188 (12%), Positives = 59/188 (31%), Gaps = 31/188 (16%)
Query: 356 LHDIAVKVGTRARL----LVEIRSPTEIKIHWYRNDR----------KLEENKIYRTQHD 401
+ + +V A L V + + +I+W + + + RT D
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60
Query: 402 --GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILT 459
N I + ++ D G + C+ + L+ + + +
Sbjct: 61 ITNNLS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIP 119
Query: 460 EQGTVSLECKVMGI-PTPQLIWYKDNKKIKAGDIFALTANPKD------------PSSLG 506
+ C G P P L W ++ +++ A + ++ +P+ ++
Sbjct: 120 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNMTTNH 178
Query: 507 TYTCEAVN 514
++ C
Sbjct: 179 SFMCLIKY 186
Score = 44.6 bits (105), Expect = 5e-05
Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 14/189 (7%)
Query: 249 LHDIAVKVGTRARL------LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
+ + +V A L VE + T I Q + + P + NR
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTI-F 59
Query: 303 NRDGRTELNIRRVRRDDGGRYS-VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 361
+ + I +R D G Y V E + V V + D +
Sbjct: 60 DITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP-SISDFEI 118
Query: 362 KVGTRARLLVEIR--SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS-- 417
R++ P E + W N +L +Q + S + +
Sbjct: 119 PTSNIRRIICSTSGGFP-EPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTN 177
Query: 418 GRWTCLAEN 426
+ CL +
Sbjct: 178 HSFMCLIKY 186
Score = 32.7 bits (74), Expect = 0.47
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 9/128 (7%)
Query: 142 LHDIAVKVGTRARL------LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
+ + +V A L VE + T I Q + + P + NR
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTI-F 59
Query: 196 NRDGRTELNIRRVRRDDGGRYS-VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 254
+ + I +R D G Y V E + V V + D +
Sbjct: 60 DITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP-SISDFEI 118
Query: 255 KVGTRARL 262
R+
Sbjct: 119 PTSNIRRI 126
Score = 31.5 bits (71), Expect = 1.0
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 78 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS-VTASNESGYSTAKFELSVESQVPDAP 136
P + NR + + I +R D G Y V E + V V
Sbjct: 50 WPEYKNRTI-FDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF 108
Query: 137 AFIRRLHDIAVKVGTRARL 155
+ D + R+
Sbjct: 109 PTP-SISDFEIPTSNIRRI 126
Score = 30.0 bits (67), Expect = 3.2
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKD------------PSSLGTYTCEAVN 44
G P P L W ++ +++ A + ++ +P+ ++ ++ C
Sbjct: 133 GFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKY 186
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 66.3 bits (162), Expect = 2e-13
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG-------- 898
E+++ + G + L C++ ++ W +DG +L + +I
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
Query: 899 -EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
D G+Y C + G+ ++ ++
Sbjct: 63 PADS----GLYACVTSSPSGSDTTYFSV 86
Score = 64.0 bits (156), Expect = 1e-12
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----- 705
+++ + G L+ C++ ++ W +D +L + ++TG +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG-EEVEVQDS 61
Query: 706 -----GSYCCVAKNVMGKAESSTQLTIED 729
G Y CV + G + + + D
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSVNVSD 90
Score = 61.3 bits (149), Expect = 1e-11
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
+ + + V G +L +R I+W R+ +L E+ RT+ G +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN--RTRITGEE--V 56
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
++ DSG + C+ + G ++V
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 58.9 bits (143), Expect = 7e-11
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT--------A 497
+ E+E+ L G + L C++ + W +D ++ + +T +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDS 61
Query: 498 NPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
P D G Y C + G+ + V
Sbjct: 62 VPADS---GLYACVTSSPSGSDTTYFSVN 87
Score = 58.9 bits (143), Expect = 7e-11
Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
+ ++S + + ++ ++W RD Q+ ES+ +I E +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE-----V 56
Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
++ AD + C+ ++ G + + +NV
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGS--DTTYFSVNV 88
Score = 55.1 bits (133), Expect = 2e-09
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
G + EVE+ G L C++ SI W ++GV + S++ I + +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-Q-SINWL-RDGVQLAESNRTRITGEEV- 56
Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
E+ D G + CV +S SG
Sbjct: 57 ----EVQDSVPADSGLYACVTSSPSGSDTTYF 84
Score = 51.2 bits (123), Expect = 4e-08
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 37/122 (30%)
Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF----- 188
+ + + V G +L +C R + D
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQL----------RC------------RLRDDVQSINWLRD 39
Query: 189 ------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
NR R E+ ++ D G Y+ S+ SG T F ++V +P
Sbjct: 40 GVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95
Query: 243 PA 244
P+
Sbjct: 96 PS 97
Score = 51.2 bits (123), Expect = 4e-08
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 37/122 (30%)
Query: 241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF----- 295
+ + + V G +L +C R + D
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQL----------RC------------RLRDDVQSINWLRD 39
Query: 296 ------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
NR R E+ ++ D G Y+ S+ SG T F ++V +P
Sbjct: 40 GVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95
Query: 350 PA 351
P+
Sbjct: 96 PS 97
Score = 49.7 bits (119), Expect = 1e-07
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 137
NR R E+ ++ D G Y+ S+ SG T F ++V +P P+
Sbjct: 46 SNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97
Score = 40.5 bits (95), Expect = 2e-04
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 11/61 (18%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
+ W +D ++ + +T + P D G Y C + G+ + V
Sbjct: 30 DVQSINWLRDGVQLAESNRTRITGEEVEVQDSVPADS---GLYACVTSSPSGSDTTYFSV 86
Query: 56 I 56
Sbjct: 87 N 87
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 68.4 bits (167), Expect = 2e-13
Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 26/184 (14%)
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
VP P + G L W+ N EE + +
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSL 53
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTV 464
+ DSG + C + S + + V + + ++ E +
Sbjct: 54 NI---VNAKFEDSGEYKCQHQQVNE----SEPVYLEV---FSDWLLLQASAEVVMEGQPL 103
Query: 465 SLECKV-MGIPTPQLIWYKDNKKIKA---GDIFALT-ANPKDPSSLGTYTCEAVNCMGAA 519
L C ++I+YKD + +K ++T A +D GTY C
Sbjct: 104 FLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDS---GTYYCTGKVWQLDY 160
Query: 520 FSTS 523
S
Sbjct: 161 ESEP 164
Score = 66.1 bits (161), Expect = 2e-12
Identities = 32/167 (19%), Positives = 49/167 (29%), Gaps = 31/167 (18%)
Query: 768 FTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
T + E WF + E+++ L I + D E+KC
Sbjct: 24 LTCNGNNFFEVSSTKWFHNGSLSEETNS-----------SLNIVNAKFEDSGEYKCQHQQ 72
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGR 885
S + L V + L+ V+ EG + L C + ++KDG
Sbjct: 73 ----VNESEPVYLEV---FSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGE 125
Query: 886 ELKAGD------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
LK I + ED G Y C S +
Sbjct: 126 ALKYWYENHNISITNA-TVEDS----GTYYCTGKVWQLDYESEPLNI 167
Score = 63.0 bits (153), Expect = 2e-11
Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 26/186 (13%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
P + G + L C S W++ + E ++
Sbjct: 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS----------- 51
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
S+ I + D GE+KC + S V++ + + +++ V+ + +
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVN----ESEP-VYLEV---FSDWLLLQASAEVVMEGQPL 103
Query: 669 SFECKV-VGFPTPTLQWFKDNEELKP---GDVYQLTGTSSL--GSYCCVAKNVMGKAESS 722
C + + ++KD E LK +T + G+Y C K ES
Sbjct: 104 FLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESE 163
Query: 723 T-QLTI 727
+T+
Sbjct: 164 PLNITV 169
Score = 60.3 bits (146), Expect = 1e-10
Identities = 23/187 (12%), Positives = 44/187 (23%), Gaps = 38/187 (20%)
Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIK--AGDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
V+L C W+ + + + + A +D G Y C+
Sbjct: 21 NVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDS---GEYKCQHQQ---VN 74
Query: 520 FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPW 579
S P + + + G L C
Sbjct: 75 ESE-----------------PVYLEVFSDW---LLLQASAEVVMEGQPLFLRCHGWRNWD 114
Query: 580 PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
+ +Y K+G + ++I I D G + C +
Sbjct: 115 VYKVIYY-KDGE--------ALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165
Query: 640 YVHVLMP 646
+ V+
Sbjct: 166 NITVIKA 172
Score = 59.1 bits (143), Expect = 4e-10
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 23/150 (15%)
Query: 304 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
+G LNI + +D G Y S V +V + +
Sbjct: 41 HNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ-VNESEP-----VYLEVFSDW-LLLQAS 93
Query: 358 DIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
V G L K+ +Y++ L + ++ + I ++ ++ D
Sbjct: 94 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL------KYWYENHNISI--TNATVED 145
Query: 417 SGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
SG + C + + S L++ V KA +
Sbjct: 146 SGTYYCTGKVWQL-DYESEPLNITVIKAPR 174
Score = 50.3 bits (120), Expect = 4e-07
Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 22/142 (15%)
Query: 4 PTPQLIWYKDNKKIK--AGDIFALTANPKDPSSLGTYTCEAVNCMG------AAFSTSRV 55
W+ + + + + A +D G Y C+ FS +
Sbjct: 33 EVSSTKWFHNGSLSEETNSSLNIVNAKFEDS---GEYKCQHQQVNESEPVYLEVFSDWLL 89
Query: 56 IARGQQSFLDNDDVPFN-RAQGDHPIF-------GNRFRAINRDGRTELNIRRVRRDDGG 107
+ + ++ + + ++ G + + ++I +D G
Sbjct: 90 LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH--NISITNATVEDSG 147
Query: 108 RYSVTASNESG-YSTAKFELSV 128
Y T Y + ++V
Sbjct: 148 TYYCTGKVWQLDYESEPLNITV 169
Score = 46.0 bits (109), Expect = 1e-05
Identities = 22/154 (14%), Positives = 38/154 (24%), Gaps = 33/154 (21%)
Query: 90 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
+G LNI + +D G Y S V +V + +
Sbjct: 41 HNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ-VNESEP-----VYLEVFSDW-LLLQAS 93
Query: 144 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
V G L K + + G + +
Sbjct: 94 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKD----------------GEALKYWYENH--N 135
Query: 203 LNIRRVRRDDGGRYSVTASNESG-YSTAKFELSV 235
++I +D G Y T Y + ++V
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 46.0 bits (109), Expect = 1e-05
Identities = 22/154 (14%), Positives = 38/154 (24%), Gaps = 33/154 (21%)
Query: 197 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
+G LNI + +D G Y S V +V + +
Sbjct: 41 HNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ-VNESEP-----VYLEVFSDW-LLLQAS 93
Query: 251 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
V G L K + + G + +
Sbjct: 94 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKD----------------GEALKYWYENH--N 135
Query: 310 LNIRRVRRDDGGRYSVTASNESG-YSTAKFELSV 342
++I +D G Y T Y + ++V
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 43.0 bits (101), Expect = 1e-04
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 860 EGGAVNLECKVIGVPQP-TLKWFKDGRELKAGD----IHKIISGEDGTCCLGIYTCEAHN 914
+G V L C + + KWF +G + + I ED G Y C+
Sbjct: 18 KGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVN-AKFEDS----GEYKCQHQQ 72
Score = 38.3 bits (89), Expect = 0.004
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 2 GIPTPQLIWYKDNKKIKA---GDIFALT-ANPKDPSSLGTYTCEAVNCMGAAFSTS 53
++I+YKD + +K ++T A +D GTY C S
Sbjct: 112 NWDVYKVIYYKDGEALKYWYENHNISITNATVEDS---GTYYCTGKVWQLDYESEP 164
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.9 bits (181), Expect = 2e-13
Identities = 111/624 (17%), Positives = 184/624 (29%), Gaps = 218/624 (34%)
Query: 431 SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG 490
SH S E +LVP A FF L EQ L P P + D++
Sbjct: 12 SHGSLEHVLLVP---TASFFIAS---QLQEQFNKIL-------PEPTEGFAADDEPTTPA 58
Query: 491 DIFA----LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP 546
++ ++ +PS +G + + +N F + +L+ +D+ ++L
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFD-QVLNLCLTEF---------ENCYLEGNDI--HAL-- 104
Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
A ++E + K T +++ Y + DK A L
Sbjct: 105 ---AAKLLQENDTTLVK--TKELIKN-----------YITARIMAKRPFDKKSNSA--L- 145
Query: 607 GYSIEINYLEAVDDGEWKCVA------TSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
AV +G + VA + ++ Y + Y V L
Sbjct: 146 --------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY------QTYHV--LVGDLIK 189
Query: 661 VMTD--DGLVS--FECKVV---GFPTPTLQWFKDNEELKPGDVYQLT--------GTSSL 705
+ L+ + + V G L+W +N P Y L+ G L
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGL--NILEWL-ENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHL--------------------SEEDKLLLLTN 745
Y AK ++G T ++R++L S E +
Sbjct: 247 AHYVVTAK-LLG-------FTPGELRSYLKGATGHSQGLVTAVAIAETDSWES---FFVS 295
Query: 746 NKAPKFIE-----GLKSCQATVNEEFKFT-VQVSI-----SPEP--KVSWFRDDQ--QVV 790
K I G++ +A N + ++ S+ P P +S +Q V
Sbjct: 296 --VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 791 ESDN--------VKI-LK------------ETL-GVC-HL-KIHALEVADQAEWKCIATN 826
N V+I L ++L G+ L K A DQ+
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP----- 408
Query: 827 DFGQ---SITSCFLKLNVPKH--YKKP---KFLEELKAVLSEGGAVNLECKVIGVPQ-PT 877
F + ++ FL + P H P ++L V+ K I +P T
Sbjct: 409 -FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL-----VKNNVSFNAKDIQIPVYDT 462
Query: 878 LKWFKDGRELKAGDIHKIIS-----------------------GEDGTCCLGIYTCEAHN 914
D R L +I+ G G LG+ T N
Sbjct: 463 FDG-SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT--HRN 519
Query: 915 CMGT----------TSSSAALLGF 928
GT + GF
Sbjct: 520 KDGTGVRVIVAGTLDINPDDDYGF 543
Score = 50.8 bits (121), Expect = 3e-06
Identities = 68/417 (16%), Positives = 115/417 (27%), Gaps = 156/417 (37%)
Query: 335 TAKFELS-VESQVPDAPA-------------FIRR------LHDIAVKVGTRARLLVEIR 374
KF L V S V + F +H +A A+LL E
Sbjct: 61 VGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA------AKLLQEND 113
Query: 375 SPTEIKIHW---Y--------RNDRKLEENKIYRTQHDGN------F--------YFIDL 409
+ Y R K + ++R +GN F YF +L
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKA-PFFTKELEAI--LTEQGT--- 463
L+ + L + + S + LS L+ A FT+ L + L
Sbjct: 174 RD--LYQTYH--VLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 464 --------VSL-------------ECKVMGIPTPQLIWYKDNKKIKAGDIF--ALTANPK 500
+S K++G +L Y + + A
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 501 DPSSLGTYTCEAVNCMGAAFSTSRVI-ARGQQSFLDNDDVPFNSLMPP------------ 547
S + + F I R +++ P SL PP
Sbjct: 288 SWES---FFVSVRKAITVLFF----IGVRCYEAY------PNTSL-PPSILEDSLENNEG 333
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR-SIYWYNKEGVVEASDKYHIMADG-- 604
P+P+ + N+ + + + +P + I N K +++ G
Sbjct: 334 VPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-------GAKNLVVS-GPP 383
Query: 605 --LGGYSIEINYLEAVDDGEWKCVATSSSGVKQ----FSAAYVHVLMPKNYRKPRFV 655
L G ++ + +A SG+ Q FS RK +F
Sbjct: 384 QSLYGLNLTLRKAKA------------PSGLDQSRIPFSE-----------RKLKFS 417
Score = 49.7 bits (118), Expect = 6e-06
Identities = 66/426 (15%), Positives = 108/426 (25%), Gaps = 166/426 (38%)
Query: 669 SFECKVVGFPTPTLQWF-----KDN---------EEL----KPGDVYQLTGT-------- 702
S E PT +F ++ E +P +L G
Sbjct: 15 SLEH---VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 703 ---SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
S +G + V + + E+ L DI H + KLL + K E +K+
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFEN-CYLEGNDI--H-ALAAKLLQENDTTLVKTKELIKN-- 125
Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL-EVADQA 818
+ ++ P K S S AL +
Sbjct: 126 ------YITARIMAKRPFDKKS---------NS------------------ALFRAVGEG 152
Query: 819 EWKCIATNDF-GQ-SITSCFLKL----NVPKHYKKPKFLEELKAVLSEGGAVNLECKVIG 872
+ +A F GQ + F +L ++ LSE L+ +
Sbjct: 153 NAQLVAI--FGGQGNTDDYFEELRDLYQTYHVLVGD-LIKFSAETLSELIRTTLDAE--- 206
Query: 873 VPQPTLKWFKDGRELKAGDIHKIISGEDGT--------------------CCLGIYTCEA 912
K F G +I + + T + T +
Sbjct: 207 ------KVFTQGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 913 HNC---------MGTTSSSAALL------------GFEDKSQIEKAEE--------GKKA 943
G T S L+ F + KA +A
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV--SVRKAITVLFFIGVRCYEA 313
Query: 944 LIVKDPSLSTIQE-----EGTSEIYDTPMASIE-------EREI----SFSFDGKEVSVS 987
S +++ EG +PM SI + + S GK+V +S
Sbjct: 314 YPNTSLPPSILEDSLENNEGVP----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 988 LYETPD 993
L
Sbjct: 370 LVNGAK 375
Score = 49.3 bits (117), Expect = 8e-06
Identities = 40/214 (18%), Positives = 62/214 (28%), Gaps = 66/214 (30%)
Query: 7 QLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ--QSFL 64
QL Y + A P L +Y A T+ IA +SF
Sbjct: 245 QLAHYV---------VTAKLLG-FTPGELRSYLKGATGH-SQGLVTAVAIAETDSWESFF 293
Query: 65 DNDD----VPF---NRAQGDHPIFGNRFRAIN---RDGRTE----LNIRRVRRDDGGRYS 110
+ V F R +P + + L+I + ++ Y
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY- 352
Query: 111 VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA-----------RLLVEI 159
V +N L QV +I++ G + L + +
Sbjct: 353 VNKTNSH--------LPAGKQV-----------EISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 160 RSPTEIKCQFDLNNT-IPFSFRAQGDHPIFGNRF 192
R + K L+ + IPFS R F NRF
Sbjct: 394 R---KAKAPSGLDQSRIPFSERK----LKFSNRF 420
Score = 48.5 bits (115), Expect = 1e-05
Identities = 59/317 (18%), Positives = 92/317 (29%), Gaps = 130/317 (41%)
Query: 719 AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV-NEEFKFTVQVSISPE 777
A S+ LT+ +H S E LL+ T + F A+ E+F I PE
Sbjct: 3 AYSTRPLTL----SHGSLEHVLLVPTAS----FF------IASQLQEQF-----NKILPE 43
Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
P + DD+ + +++ + LG + V+ E
Sbjct: 44 PTEGFAADDEP---TTPAELVGKFLG------Y---VSSLVEPS---------------- 75
Query: 838 KLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS 897
K +F + L L+E E L+ DIH + +
Sbjct: 76 --------KVGQFDQVLNLCLTE-----FENCY----------------LEGNDIHALAA 106
Query: 898 ---GEDGTCCLGI------YTCEAHNCMG---TTSSSAALLGFEDKSQIEKAEEGKKALI 945
E+ T + Y A S++AL EG L+
Sbjct: 107 KLLQENDTTLVKTKELIKNYI-TARIMAKRPFDKKSNSALF--------RAVGEGNAQLV 157
Query: 946 VKDPSLSTI---QEEGTSEIYDTPMASIEE-REISFSFDGKEVSVSLYETPDLTEEEAIK 1001
I Q G ++ Y EE R+ LY+T + + IK
Sbjct: 158 -------AIFGGQ--GNTDDY------FEELRD-------------LYQTYHVLVGDLIK 189
Query: 1002 VVEMYADELSEHISDKN 1018
EL D
Sbjct: 190 FSAETLSELIRTTLDAE 206
Score = 47.0 bits (111), Expect = 4e-05
Identities = 85/540 (15%), Positives = 137/540 (25%), Gaps = 246/540 (45%)
Query: 21 DIFALTAN--PKDPSSLG-------TYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF 71
DI AL A ++ ++L Y A R + S L F
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYI-------TARIMAKRPFDKKSNSAL------F 146
Query: 72 NRAQ-GDHPIF------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF 124
G+ + GN D EL RD Y Y
Sbjct: 147 RAVGEGNAQLVAIFGGQGN-----TDDYFEEL------RD---LYQT-------Y----- 180
Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQF----D----LNN--- 173
+ L + L IR+ + + F + L N
Sbjct: 181 -----------HVLVGDLIKFS-----AETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 174 --------TIPFSFRAQGDHPI-----FGNRFRAINRDGRTELNIRRVRRDDGGRYS--V 218
+IP S P+ + G T +R + G V
Sbjct: 225 TPDKDYLLSIPISC------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 219 TA-------SNESGYSTAK------FELSVESQ----------------------VPDAP 243
TA S ES + + + F + V VP +P
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SP 337
Query: 244 AF-IRRLHD---------------------IAVKVGTRA-----------RLLVEIRSPT 270
I L I++ G + L + +R
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR--- 394
Query: 271 EIKCQFDLNNT-IPFSFRAQGDHPIFGNRFRAINR-------DGRTELNIRRVRRDDGGR 322
+ K L+ + IPFS R F NRF + ++L + + +++
Sbjct: 395 KAKAPSGLDQSRIPFSERK----LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN--- 447
Query: 323 YSVTASNESGYSTAKFELSVES-QVP-----DAPAFIRRLHDIAVKVGTRARLLVE--IR 374
+ + Q+P D D+ V G+ + +V+ IR
Sbjct: 448 ---------------VSFNAKDIQIPVYDTFDG-------SDLRVLSGSISERIVDCIIR 485
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL----AENAVGR 430
P + W E ++ H +D F G + L N G
Sbjct: 486 LP----VKW-------ETTTQFKATH-----ILD------FGPGGASGLGVLTHRNKDGT 523
Score = 41.2 bits (96), Expect = 0.002
Identities = 56/332 (16%), Positives = 93/332 (28%), Gaps = 118/332 (35%)
Query: 461 QGTVSLECKVMGI------PTPQLIW------YKDNKKIKAGDIFALTANPKDPSSL-GT 507
QG+ + + MG+ Q +W +KD DI + NP + + G
Sbjct: 1624 QGS---QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI--VINNPVNLTIHFGG 1678
Query: 508 YTCEAV--NCMGAAFSTSRVIARGQQSFLDNDDVPFNSLM---PPG---------PAPIF 553
+ + N F T + + S G PA +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA-LT 1737
Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG--LGGYSIE 611
+ E A E L +S +G++ A A G LG Y+
Sbjct: 1738 LMEK----------AAFE--DL-----KS------KGLIPADA---TFA-GHSLGEYA-- 1768
Query: 612 INYLEAVDDGEWKCVA-TSSSGVKQFSAA---------YVHVLMPK------NYR----K 651
A S + V + + V +P+ NY
Sbjct: 1769 ---------------ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 652 PRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFK----DNEELKPGDVYQLTGT-SSLG 706
P + A + + L + VG T W N Y G +L
Sbjct: 1814 P---GRVAASFSQEALQYV-VERVGKRT---GWLVEIVNYNV---ENQQYVAAGDLRALD 1863
Query: 707 SYCCVAKNVMGK----AESSTQLTIEDIRNHL 734
+ V + + E L++E++ HL
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 38.9 bits (90), Expect = 0.012
Identities = 58/299 (19%), Positives = 94/299 (31%), Gaps = 110/299 (36%)
Query: 811 ALEVADQAEWKCIATNDFGQSITSCFLKLNVPK----HY--KKPKFLEELKAVLSEGGAV 864
A +V ++A+ + +G SI + N P H+ +K K + E + + V
Sbjct: 1642 AQDVWNRADNH--FKDTYGFSILDIVI--NNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAA 924
+ + K T K FK+ E + E G +T A + +A
Sbjct: 1698 DGKLK-------TEKIFKEINE-HSTSY--TFRSEKGLLSATQFTQPA---LTLMEKAA- 1743
Query: 925 LLGFEDKSQIEKAEEGKKALIVKDP-----SLSTIQEEGTSEIYDTPMASIEEREISFSF 979
FED ++ +G LI D SL G E Y +AS+ + S
Sbjct: 1744 ---FED---LK--SKG---LIPADATFAGHSL------G--E-Y-AALASLAD---VMSI 1779
Query: 980 DGKEVSVSLYETPDLTEEEAIKVVE------MYADELSEH-ISDKNMIELPPLR----FT 1028
E ++VV A E S+ MI + P R F+
Sbjct: 1780 -----------------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 1029 KES--------SRSQNIQMEAV---------VIDVDHKGTTEDDDLRTDAGLDEISEDL 1070
+E+ + +E V V G LD ++ L
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVA----AGDLR--------ALDTVTNVL 1869
Score = 35.8 bits (82), Expect = 0.092
Identities = 32/155 (20%), Positives = 43/155 (27%), Gaps = 66/155 (42%)
Query: 12 KDNKKIKAGDIFA-LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI----ARGQQSFLDN 66
K I A FA SLG Y A+ + S ++ RG
Sbjct: 1748 KSKGLIPADATFAGH--------SLGEYA--ALASLADVMSIESLVEVVFYRGM---TMQ 1794
Query: 67 DDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR--YSVTASNESGYSTAKF 124
VP RD+ GR Y + A N + +
Sbjct: 1795 VAVP--------------------------------RDELGRSNYGMIAINPGRVAAS-- 1820
Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI 159
S E+ L + +VG R LVEI
Sbjct: 1821 -FSQEA-----------LQYVVERVGKRTGWLVEI 1843
Score = 34.6 bits (79), Expect = 0.20
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 41/130 (31%)
Query: 954 IQEEGTSEIYDTPMASIEEREISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADE-LSE 1012
QE+G M G + LY+T A V AD +
Sbjct: 1626 SQEQG--------M-------------GMD----LYKTSK----AAQDVWN-RADNHFKD 1655
Query: 1013 -------HISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDDDLRTDAGLDE 1065
I N + L + F E + A++ + G + + + ++E
Sbjct: 1656 TYGFSILDIVINNPVNLT-IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI--FKEINE 1712
Query: 1066 ISEDLMLHHQ 1075
S +
Sbjct: 1713 HSTSYTFRSE 1722
Score = 31.2 bits (70), Expect = 2.4
Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 40/106 (37%)
Query: 2 GIPTP----------QLIWY--KDNKKIKAGD-IF-ALTANPKD------PSSLGTYTCE 41
G+P+P Q+ Y K N + AG + +L K+ P SL
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL------ 386
Query: 42 AVNCMGAAFSTS-RVIARGQQSFLDNDDVPFN-RAQGDHPIFGNRF 85
+ + R S LD +PF+ R F NRF
Sbjct: 387 ------YGLNLTLRKAKA--PSGLDQSRIPFSERK----LKFSNRF 420
Score = 30.0 bits (67), Expect = 6.2
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 24/109 (22%)
Query: 22 IFALTANPKDPSSLGTYTCEAVN--CMGAAFSTSRV------IARGQQSFLD--NDDVPF 71
+ A P+D Y A+N + A+FS + + + ++ N +V
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE- 1849
Query: 72 NRAQ----GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 116
N+ Q GD RA++ LN ++++ D + S E
Sbjct: 1850 NQ-QYVAAGD-------LRALDTVTNV-LNFIKLQKIDIIELQKSLSLE 1889
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 68.0 bits (166), Expect = 3e-13
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 31/167 (18%)
Query: 768 FTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
Q + SPE WF ++ + + I A V D E++C
Sbjct: 27 LKCQGAYSPEDNSTQWFHNESLISSQAS-----------SYFIDAATVNDSGEYRCQTNL 75
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGR 885
S S ++L V + L+ + V E ++L C + + ++G+
Sbjct: 76 ----STLSDPVQLEV---HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128
Query: 886 ELKAGD------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
+ K I K + +D G Y C SS +
Sbjct: 129 DRKYFHHNSDFHIPKA-TLKDS----GSYFCRGLVGSKNVSSETVNI 170
Score = 66.0 bits (161), Expect = 1e-12
Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 25/157 (15%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
SP + W+ N+ + +++ + + ++ DSG + C +
Sbjct: 34 SPEDNSTQWFHNESLISSQ-------ASSYF---IDAATVNDSGEYRCQTNLSTLSD--P 81
Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKA---- 489
+L V + + + E+ + L C ++ + ++ K K
Sbjct: 82 VQLEVHIG-----WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN 136
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
D A KD G+Y C + S + I
Sbjct: 137 SDFHIPKATLKDS---GSYFCRGLVGSKNVSSETVNI 170
Score = 61.8 bits (150), Expect = 5e-11
Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 28/186 (15%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
P + E + S L+CQ P S W++ E ++ +
Sbjct: 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS----------- 54
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFS-AAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
S I+ D GE++C S+ S + V + +++ + V ++
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLST----LSDPVQLEVHIG-----WLLLQAPRWVFKEEDP 105
Query: 668 VSFECKV-VGFPTPTLQWFKDNEELKP---GDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
+ C + + ++ ++ K + + + GSY C S
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN-VS 164
Query: 722 STQLTI 727
S + I
Sbjct: 165 SETVNI 170
Score = 52.2 bits (125), Expect = 9e-08
Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 17/134 (12%)
Query: 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 368
I +D G Y + + V+ +V ++ + K
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLSTLSD------PVQLEVHIGWLLLQAPRWV-FKEEDPIH 107
Query: 369 LLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
L K+ + +N + + H + + I +L DSG + C
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDR------KYFHHNSDFHI--PKATLKDSGSYFCRGLVG 159
Query: 428 VGRSHCSCELSVLV 441
+ S +++ +
Sbjct: 160 SK-NVSSETVNITI 172
Score = 49.9 bits (119), Expect = 6e-07
Identities = 22/182 (12%), Positives = 44/182 (24%), Gaps = 34/182 (18%)
Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
+V+L+C+ P W+ + I + + + G Y C+ + S
Sbjct: 24 SVTLKCQGAYSPEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRCQTNL---STLS 79
Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
+ +V L+ P +F + L C
Sbjct: 80 DPVQL-----------EVHIGWLLLQAPRWVFKE---------EDPIHLRCHSWKNTALH 119
Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
+ + + G I D G + C S +
Sbjct: 120 KVTYL-QNG--------KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
Query: 642 HV 643
+
Sbjct: 171 TI 172
Score = 44.1 bits (104), Expect = 6e-05
Identities = 16/145 (11%), Positives = 42/145 (28%), Gaps = 27/145 (18%)
Query: 4 PTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS--------- 53
P W+ + I + + + G Y C+ + S
Sbjct: 35 PEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRCQTNL---STLSDPVQLEVHIGW 90
Query: 54 RVIARGQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRT--------ELNIRRVRRD 104
++ + F + D + + + + + ++G+ + +I +
Sbjct: 91 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL---QNGKDRKYFHHNSDFHIPKATLK 147
Query: 105 DGGRYSVTASNESG-YSTAKFELSV 128
D G Y S S+ +++
Sbjct: 148 DSGSYFCRGLVGSKNVSSETVNITI 172
Score = 42.6 bits (100), Expect = 1e-04
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 19/84 (22%)
Query: 855 KAVLS---------EGGAVNLECKVIGVPQP-TLKWFKDGRELKA-GDIHKI--ISGEDG 901
KAV+ E +V L+C+ P+ + +WF + + + + I + D
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDS 66
Query: 902 TCCLGIYTCEAHNCMGTTSSSAAL 925
G Y C+ + T S L
Sbjct: 67 ----GEYRCQTNL--STLSDPVQL 84
Score = 39.9 bits (93), Expect = 0.001
Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 27/143 (18%)
Query: 95 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 154
I +D G Y + + V+ +V ++ + K
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLSTLSD------PVQLEVHIGWLLLQAPRWV-FKEE---- 103
Query: 155 LLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 213
P ++C N + ++ G + + ++ +I + D
Sbjct: 104 ------DPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH--------NSDFHIPKATLKDS 149
Query: 214 GRYSVTASNESG-YSTAKFELSV 235
G Y S S+ +++
Sbjct: 150 GSYFCRGLVGSKNVSSETVNITI 172
Score = 39.9 bits (93), Expect = 0.001
Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 27/143 (18%)
Query: 202 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 261
I +D G Y + + V+ +V ++ + K
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLSTLSD------PVQLEVHIGWLLLQAPRWV-FKEE---- 103
Query: 262 LLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
P ++C N + ++ G + + ++ +I + D
Sbjct: 104 ------DPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH--------NSDFHIPKATLKDS 149
Query: 321 GRYSVTASNESG-YSTAKFELSV 342
G Y S S+ +++
Sbjct: 150 GSYFCRGLVGSKNVSSETVNITI 172
Score = 37.9 bits (88), Expect = 0.007
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 2 GIPTPQLIWYKDNKKIKA----GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
++ + ++ K K D A KD G+Y C + S + I
Sbjct: 115 NTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDS---GSYFCRGLVGSKNVSSETVNI 170
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 67.6 bits (164), Expect = 2e-12
Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 47/240 (19%)
Query: 243 PAFIRRLHDIAVKVGTRARL-----LVEIRSPTEI--KCQFDLNNTIPFSFRAQGDHPIF 295
P + V VG + E + + D ++ + + +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 296 GNRFRA-INRDGRTE-----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
RF+ + G T L ++ V++ D G Y+ ++ K + + +P+
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL-WVLPEE 124
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
P +R V+VG ++ I+S K++W + E + +
Sbjct: 125 PRDLR------VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178
Query: 407 ------------------------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
I L +V D G +TC S + L V+
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238
Score = 63.7 bits (154), Expect = 4e-11
Identities = 21/238 (8%), Positives = 49/238 (20%), Gaps = 69/238 (28%)
Query: 551 PIFIKEVENVKAKIGTSAILECQV--LVPPWPRSIYWYNKEGVVEASDKYHIMADG---- 604
P ++ +G S ++ C V + W + +AS+
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 605 ---------------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY 649
S+ + ++ D+G + C + V + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKP-VELWVLPEE 124
Query: 650 RKPRFVESLKAVMTDDGLVSFECKVVGFPTP---TLQWFKDNEELKPGDVYQL------- 699
+ V C + + W + +
Sbjct: 125 PRDLRVRV-------GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 700 --------------------TGTSSL----------GSYCCVAKNVMGKAESSTQLTI 727
S+ G Y C ++ + L +
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
Score = 63.7 bits (154), Expect = 5e-11
Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 37/242 (15%)
Query: 136 PAFIRRLHDIAVKVGTRARL-----LVEIRSPTEI--KCQFDLNNTIPFSFRAQGDHPIF 188
P + V VG + E + + D ++ + + +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 189 GNRFRA-INRDGRTE-----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
RF+ + G T L ++ V++ D G Y+ ++ K + + +P+
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL-WVLPEE 124
Query: 243 PAFIRRLHDIAVKVGTRARL-----------LVEI----RSPTEIKCQFDLNNTIPFSFR 287
P +R V+VG ++ + ++ S + + + L+
Sbjct: 125 PRDLR------VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178
Query: 288 AQGDHPIFGNRFRAINRDGRTE--LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
F NR R + + ++ V+ D G Y+ + S L V
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238
Query: 346 VP 347
Sbjct: 239 EF 240
Score = 60.3 bits (145), Expect = 7e-10
Identities = 33/195 (16%), Positives = 66/195 (33%), Gaps = 29/195 (14%)
Query: 63 FLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 122
+ N VP R Q + G+ + DG L ++ V++ D G Y+ ++
Sbjct: 58 YYSNLSVPTGRFQNRSHLVGD---TFHNDG--SLLLQDVQKADEGIYTCEIRLKNESMVM 112
Query: 123 KFELSVESQVPDAPAFIRRLHDIAVKVGTRARL-----------LVEI----RSPTEIKC 167
K + + +P+ P +R V+VG ++ + ++ S + +
Sbjct: 113 KKPVEL-WVLPEEPRDLR------VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEE 165
Query: 168 QFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE--LNIRRVRRDDGGRYSVTASNESG 225
+ L+ F NR R + + ++ V+ D G Y+ +
Sbjct: 166 ETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKL 225
Query: 226 YSTAKFELSVESQVP 240
S L V
Sbjct: 226 ESRKTIVLHVVQDEF 240
Score = 58.0 bits (139), Expect = 4e-09
Identities = 24/235 (10%), Positives = 51/235 (21%), Gaps = 66/235 (28%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPT---EIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
P + V VG + ++ ++ W + K + ++ +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 407 --------------------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
+ L V D G +TC + + V
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL---- 121
Query: 447 APFFTKELEAILTEQGTVSLECKVMGIPTPQLI---WYKDNKKIKAGDIFALTANPKDPS 503
P ++L T + C + ++ W + + +
Sbjct: 122 -PEEPRDLRV--RVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178
Query: 504 -----------------------SL----------GTYTCEAVNCMGAAFSTSRV 525
S+ G YTC + T +
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Score = 55.6 bits (133), Expect = 2e-08
Identities = 24/206 (11%), Positives = 47/206 (22%), Gaps = 62/206 (30%)
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKE-------------------TLGVCHLKIHALEVA 815
+V W + S+ V L + ++ A
Sbjct: 35 KHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKA 94
Query: 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
D+ + C + ++L V + + G + C + +
Sbjct: 95 DEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR-------VGDTTQMRCSIQSTEE 147
Query: 876 P---TLKWFKDGRELKAGD-------------------------IHKIISGEDGTCCL-- 905
+ W + + IS DG+ L
Sbjct: 148 KRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQT 207
Query: 906 ------GIYTCEAHNCMGTTSSSAAL 925
GIYTC + + + L
Sbjct: 208 VKESDQGIYTCSIYVGKLESRKTIVL 233
Score = 44.1 bits (103), Expect = 1e-04
Identities = 34/262 (12%), Positives = 69/262 (26%), Gaps = 82/262 (31%)
Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVM---GIPTPQLIWYKDNKKIKAGD-IFALTA 497
++ P T + G +V + C V ++ W K A + + +
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 498 NPKDPS------------------SL----------GTYTCEAVNCMGAAFSTSRVIARG 529
N P+ SL G YTCE + V
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW- 119
Query: 530 QQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR--SIYWYN 587
++P P +++ ++G + + C + R + W
Sbjct: 120 --------------VLPEEP--------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF 157
Query: 588 KEG----------------------VVEASDKYHIMADGLGG-YSIEINYLEAVDDGEWK 624
G + ++ + D SI++ ++ D G +
Sbjct: 158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT 217
Query: 625 CVATSSSGVKQFSAAYVHVLMP 646
C + +HV+
Sbjct: 218 CSIYVGKLESR-KTIVLHVVQD 238
Score = 36.8 bits (84), Expect = 0.025
Identities = 30/251 (11%), Positives = 53/251 (21%), Gaps = 78/251 (31%)
Query: 652 PRFVESLKAVMTDDGL-VSFECKV---VGFPTPTLQWFKDNEELKPGDVY---------- 697
P S + G V C V + W ++ +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 698 -------------QLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHL 734
SL G Y C + + + L
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL----WVL 121
Query: 735 SEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN 794
EE + L + + C EE KV+W E +
Sbjct: 122 PEEPRDLRVRVGDTTQM-----RCSIQSTEE---------KRVTKVNWMFSSGSHTEEET 167
Query: 795 VKILKETL-----------------------GVCHLKIHALEVADQAEWKCIATNDFGQS 831
V + +K+ ++ +DQ + C +S
Sbjct: 168 VLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES 227
Query: 832 ITSCFLKLNVP 842
+ L +
Sbjct: 228 RKTIVLHVVQD 238
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 62.1 bits (151), Expect = 4e-12
Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 841 VPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG- 898
+P+ + E++++ + G + L C++ ++ W +DG +L + +I
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEE 61
Query: 899 --------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
D G+Y C + G+ ++ ++
Sbjct: 62 VEVRDSIPADS----GLYACVTSSPSGSDTTYFSV 92
Score = 59.0 bits (143), Expect = 5e-11
Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 646 PKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
P+ + +++++ G L+ C++ ++ W +D +L + ++TG
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG-EE 61
Query: 705 L----------GSYCCVAKNVMGKAESSTQLTI 727
+ G Y CV + G + + +
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 58.3 bits (141), Expect = 1e-10
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
+ + + V G +L +R + I+W R+ +L E+ R +
Sbjct: 5 EQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLVESNRTRITGE--- 60
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+++ DSG + C+ + G ++V
Sbjct: 61 -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 56.0 bits (135), Expect = 7e-10
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
++S + + ++ ++W RD Q+VES+ +I E ++
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLR-DDVQSINWLRDGVQLVESNRTRITGEE-----VE 63
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ AD + C+ ++ G T +NV
Sbjct: 64 VRDSIPADSGLYACVTSSPSGSDTTYF--SVNV 94
Score = 56.0 bits (135), Expect = 8e-10
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 441 VPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT--- 496
+P+ + E+E++L G + L C++ + W +D ++ + +T
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEE 61
Query: 497 -----ANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
+ P D G Y C + G+ + V
Sbjct: 62 VEVRDSIPADS---GLYACVTSSPSGSDTTYFSV 92
Score = 52.1 bits (125), Expect = 2e-08
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYS 609
EVE++ G L C++ SI W ++GV + S++ I + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-Q-SINWL-RDGVQLVESNRTRITGEEV---- 62
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
E+ D G + CV +S SG V+V
Sbjct: 63 -EVRDSIPADSGLYACVTSSPSGSDTTY-FSVNV 94
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
NR R E+ +R D G Y+ S+ SG T F ++V
Sbjct: 52 SNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
NR R E+ +R D G Y+ S+ SG T F ++V
Sbjct: 52 SNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
NR R E+ +R D G Y+ S+ SG T F ++V
Sbjct: 52 SNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 37.9 bits (88), Expect = 0.002
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
+ W +D ++ + +T + P D G Y C + G+ + V
Sbjct: 36 DVQSINWLRDGVQLVESNRTRITGEEVEVRDSIPADS---GLYACVTSSPSGSDTTYFSV 92
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 65.5 bits (159), Expect = 5e-12
Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 42/209 (20%)
Query: 558 ENVKAKIGTSAILECQVLVPP----------WPRS-------IYWYNKEGVVEASDKYHI 600
V +G S L C + VP W R ++ + S +
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 66
Query: 601 MAD----GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
+A L S+ + L D+G + C+ + + ++ VL E
Sbjct: 67 VAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAK----PQNTAE 122
Query: 657 SLKAVMTDDGLVSFECKVVGF-PTPTLQWFKDNEELKPGDVYQL------TGTSSL---- 705
K +T + + C G P + W D + T TS
Sbjct: 123 VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVP 182
Query: 706 ------GSYCCVAKNVMGKAESSTQLTIE 728
C ++ + +++
Sbjct: 183 SSQVDGKQVTCKVEHESFEKPQLLTVSLT 211
Score = 53.9 bits (129), Expect = 5e-08
Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 37/167 (22%)
Query: 780 VSWFRDDQQVVE-----------------SDNVKILKETLGVCHLKIHALEVADQAEWKC 822
++W R + L L L++ L V D+ + C
Sbjct: 36 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTC 95
Query: 823 IATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQPTLKWF 881
+ F Q S + L V + ++++ L+ C G P + W
Sbjct: 96 LF-VTFPQGSRSVDIWLRVLAKPQNTAEVQKV--QLTGEPVPMARCVSTGGRPPAQITWH 152
Query: 882 KDGRELKAGDIHKIISGEDGTCCL--------------GIYTCEAHN 914
D + ++ GT + TC+ +
Sbjct: 153 SDLGGMPQTS--QVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEH 197
Score = 47.4 bits (112), Expect = 7e-06
Identities = 25/160 (15%), Positives = 41/160 (25%), Gaps = 25/160 (15%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNF-----YFIDLSSVSLFDSGRWTCLAENAVG 429
+ + E+K + + + + D G +TCL
Sbjct: 43 ESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQ 102
Query: 430 RSHCSC-ELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMG-IPTPQLIWYKDNKK 486
S L VL P T E+ + LT + C G P Q+ W+ D
Sbjct: 103 GSRSVDIWLRVLAK-----PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG 157
Query: 487 IKAGDIFA------------LTANPKDPSSLGTYTCEAVN 514
+ P TC+ +
Sbjct: 158 MPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEH 197
Score = 38.5 bits (89), Expect = 0.006
Identities = 28/212 (13%), Positives = 55/212 (25%), Gaps = 24/212 (11%)
Query: 251 DIAVKVGTRARLLVEIRSP-------TEIKCQFDLNNTIPFSFR-AQGDHPIFGNRFRAI 302
+ +G L ++ P +++ + F QG R +
Sbjct: 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 67
Query: 303 -----NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
L + +R +D G Y+ S + + +V P +
Sbjct: 68 AARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGS---RSVDIWLRVLAKPQNTAEVQ 124
Query: 358 DIAVKVGTRARLLVEIR--SPTEIKIHWYRNDRKLEENKIYRTQHDGNFY---FIDLSSV 412
+ + P +I W+ + + + G L
Sbjct: 125 KVQLTGEPVPMARCVSTGGRP-PAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPS 183
Query: 413 SLFDSGRWTCLAENAVGRSHCSCE--LSVLVP 442
S D + TC E+ L+V P
Sbjct: 184 SQVDGKQVTCKVEHESFEKPQLLTVSLTVYYP 215
Score = 32.0 bits (72), Expect = 0.75
Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 24/200 (12%)
Query: 668 VSFECKVVGFPTPT-----LQWFKDNEELKPGDVYQLTGTSSLGSYCC-VAKNVMGKAES 721
V+ C + L W + E +Q G S S +G
Sbjct: 17 VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 76
Query: 722 STQLTIEDIR-------------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKF 768
L + +R + L P+ ++ Q T
Sbjct: 77 DASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 136
Query: 769 TVQVS-ISPEPKVSWFRDDQQVVESDNVKILKE-TLGVC-HLKIHALEVADQAEWKCIAT 825
+ P +++W D + ++ V T+ V + D + C
Sbjct: 137 RCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVE 196
Query: 826 NDFGQSITSCFLKLNVPKHY 845
++ + + L V +Y
Sbjct: 197 HESFEKPQLLTVSLTV--YY 214
Score = 32.0 bits (72), Expect = 0.83
Identities = 23/178 (12%), Positives = 45/178 (25%), Gaps = 20/178 (11%)
Query: 71 FNRAQGDHPIFGNRFRAI-----NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 125
F++ QG R + L + +R +D G Y+ S
Sbjct: 50 FHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGS---RS 106
Query: 126 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQ 182
+ + +V P + + + P +I DL S
Sbjct: 107 VDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPG 166
Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 240
+ + + DG + + +ES +S+ P
Sbjct: 167 FL----SGTVTV-----TSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYP 215
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 63.0 bits (153), Expect = 6e-12
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 22/98 (22%)
Query: 652 PRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----------VYQLTG 701
P V+ AV + V G P P+L+W + L +
Sbjct: 4 PASVQLHTAV--EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 61
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
L G+Y +A N G+A +S D
Sbjct: 62 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99
Score = 62.3 bits (151), Expect = 1e-11
Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 18/94 (19%)
Query: 848 PKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGT----- 902
P ++ AV E + V G P P+L+W +G L E
Sbjct: 4 PASVQLHTAV--EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 61
Query: 903 -CCL----------GIYTCEAHNCMGTTSSSAAL 925
CL G YT A N G S+S
Sbjct: 62 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95
Score = 56.9 bits (137), Expect = 9e-10
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFYFID-------LSSVSLFDSGRWTCLAENAVGRSH 432
+ W N L E T+ L+ + ++G +T LA N G++
Sbjct: 31 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90
Query: 433 CSCELSVLVPKAYKAP 448
S + + P
Sbjct: 91 ASIMAAFMDNPFEFNP 106
Score = 54.6 bits (131), Expect = 6e-09
Identities = 22/129 (17%), Positives = 33/129 (25%), Gaps = 28/129 (21%)
Query: 448 PFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-- 505
P + A+ E + V G P P L W + + +
Sbjct: 4 PASVQLHTAV--EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 61
Query: 506 --------------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
G YT A N G A ++ +F+DN P P P
Sbjct: 62 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA------AFMDNPFEF----NPEDPIP 111
Query: 552 IFIKEVENV 560
+
Sbjct: 112 DTNSTSGDP 120
Score = 51.9 bits (124), Expect = 5e-08
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 776 PEPKVSWFRDDQQVVESDNVKI------LKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
P P + W + + E+ + ET+ L+++ + + +A N FG
Sbjct: 28 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 87
Query: 830 QSITSCFLKLNVPKHYKKPK 849
Q+ S P+
Sbjct: 88 QASASIMAAFMDNPFEFNPE 107
Score = 44.9 bits (106), Expect = 1e-05
Identities = 12/70 (17%), Positives = 17/70 (24%), Gaps = 16/70 (22%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------------GTYTCEAVNC 45
G P P L W + + + G YT A N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 46 MGAAFSTSRV 55
G A ++
Sbjct: 86 FGQASASIMA 95
Score = 37.2 bits (86), Expect = 0.005
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
L + + + G Y++ A+N G ++A +
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
Score = 37.2 bits (86), Expect = 0.005
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
L + + + G Y++ A+N G ++A +
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
Score = 37.2 bits (86), Expect = 0.005
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
L + + + G Y++ A+N G ++A +
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
Score = 34.9 bits (80), Expect = 0.031
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 11/109 (10%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY-- 608
P ++ V+ + V P P S+ W V+ +
Sbjct: 4 PASVQLHTAVEMHHWC---IPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 609 ----SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPR 653
+ +N V++G + +A + G S + P
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDNPFEFNPE 107
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 65.5 bits (159), Expect = 6e-12
Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 44/209 (21%)
Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNK--EGVV---------------EASDKY 598
+ A +G A L C + + + W + VV +
Sbjct: 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRT 71
Query: 599 HIMADGL--GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
I+ DG+ G ++ I+ + A D G++ C ++ A V + +
Sbjct: 72 SILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAALGSDL---- 124
Query: 657 SLKAVMTDDGLVSFECKVVG-FPTPTLQWFKDNEELKP----------GDVYQLTGT--- 702
+ DG + EC+ G +P P +QW + E P +Y + +
Sbjct: 125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM 184
Query: 703 --SSLGSYCCVAKNVMGKAESSTQLTIED 729
SS C ++ + E + ++I D
Sbjct: 185 RGSSGEGVSCTIRSSLLGLEKTASISIAD 213
Score = 47.8 bits (113), Expect = 6e-06
Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 29/175 (16%)
Query: 374 RSPTEIKIHWYRNDRKLEENKIY----RTQ------HDGNFYFIDLSSVSLFDSGRWTCL 423
S ++ Y + +++E+ + RT G + + +V+ DSG++ C
Sbjct: 43 SSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAA-LRIHNVTASDSGKYLCY 101
Query: 424 AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PTPQLIWYK 482
++ EL A ++ + G + LEC+ G P PQ+ W
Sbjct: 102 FQDGDFYEKALVELK------VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSN 155
Query: 483 DNKKIKAGDIFALTANPKD-----------PSSLGTYTCEAVNCMGAAFSTSRVI 526
+ + + A+ SS +C + + T+ +
Sbjct: 156 NKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210
Score = 46.6 bits (110), Expect = 1e-05
Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 26/171 (15%)
Query: 775 SPEPKVSWFRDDQQVVESDN------VKILKETL--GVCHLKIHALEVADQAEWKCIATN 826
S V+ + D ++V + + IL++ + G L+IH + +D ++ C +
Sbjct: 45 SLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD 104
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIG-VPQPTLKWFKDGR 885
G ++L V + + G ++LEC+ G PQP ++W +
Sbjct: 105 --GDFYEKALVELKVAALGSDL----HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKG 158
Query: 886 ELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMGTTSSSAAL 925
E +++ G + +C + + +A++
Sbjct: 159 ENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASI 209
Score = 42.0 bits (98), Expect = 4e-04
Identities = 25/163 (15%), Positives = 43/163 (26%), Gaps = 14/163 (8%)
Query: 287 RAQGDHPIFGNR---FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
+ R R G+ L I V D G+Y + Y A EL
Sbjct: 59 VEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL--- 115
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR--SPTEIKIHWYRND-RKLEENKIYRTQH 400
A D+ L P + +I W N + +
Sbjct: 116 ---KVAALGSDLHVDVKGYKDGGIHLECRSTGWYP-QPQIQWSNNKGENIPTVEAPVVAD 171
Query: 401 DGNFYFIDLS-SVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
Y + S + +C +++ + +S+ P
Sbjct: 172 GVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214
Score = 31.6 bits (71), Expect = 1.2
Identities = 12/132 (9%), Positives = 39/132 (29%), Gaps = 23/132 (17%)
Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
G Y C ++ ++ +L A + + +
Sbjct: 96 GKYLCYFQDGDFYEKALVELK--------------------VAALGSDLHVDVKGYKDGG 135
Query: 766 FKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHA-LEVADQAEWKCI 823
+ + P+P++ W + + + + ++ + +G+ + + + C
Sbjct: 136 IHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCT 195
Query: 824 ATND-FGQSITS 834
+ G T+
Sbjct: 196 IRSSLLGLEKTA 207
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 64.5 bits (157), Expect = 1e-11
Identities = 32/164 (19%), Positives = 53/164 (32%), Gaps = 31/164 (18%)
Query: 771 QVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
Q + SPE WF ++ + + I A V D E++C
Sbjct: 30 QGAYSPEDQSTQWFHNESLISSQAS-----------SYFIDAATVDDSGEYRCQTQL--- 75
Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKV-IGVPQPTLKWFKDGRELK 888
S S ++L V H L+ + V E ++L C + + ++G+ K
Sbjct: 76 -STLSDPVQLEV--HIG-WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK 131
Query: 889 AGD------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
I K + +D G Y C SS +
Sbjct: 132 YFHHNSDFYIPKA-TLKDS----GSYFCRGLVGSKNVSSETVQI 170
Score = 64.5 bits (157), Expect = 1e-11
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 25/157 (15%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
SP + W+ N+ + +++ + + ++ DSG + C + + S
Sbjct: 34 SPEDQSTQWFHNESLISS-------QASSYF---IDAATVDDSGEYRCQTQLST-LS-DP 81
Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKA---- 489
+L V + + + E+ + L C ++ + ++ K K
Sbjct: 82 VQLEVHIG-----WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN 136
Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
D + A KD G+Y C + S + I
Sbjct: 137 SDFYIPKATLKDS---GSYFCRGLVGSKNVSSETVQI 170
Score = 57.6 bits (139), Expect = 2e-09
Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 27/182 (14%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
P + E + + S L+CQ P +S W++ E ++ +
Sbjct: 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS----------- 54
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFS-AAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
S I+ D GE++C S+ S + V + +++ + V ++
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLST----LSDPVQLEVHIG-----WLLLQAPRWVFKEEDP 105
Query: 668 VSFECKV-VGFPTPTLQWFKDNEELKP---GDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
+ C + + ++ + K + + + GSY C S
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSS 165
Query: 722 ST 723
T
Sbjct: 166 ET 167
Score = 52.2 bits (125), Expect = 1e-07
Identities = 19/141 (13%), Positives = 37/141 (26%), Gaps = 17/141 (12%)
Query: 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 368
I DD G Y + +L V + + K
Sbjct: 55 SYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHI-----GWLLLQAPRWVFKEEDPIH 107
Query: 369 LLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
L K+ + +N + + H + ++I +L DSG + C
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGR------KYFHHNSDFYI--PKATLKDSGSYFCRGLVG 159
Query: 428 VGRSHCSCELSVLVPKAYKAP 448
S + + + +
Sbjct: 160 SKNVS-SETVQITITQGLAVS 179
Score = 48.3 bits (115), Expect = 3e-06
Identities = 23/182 (12%), Positives = 45/182 (24%), Gaps = 34/182 (18%)
Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
+V+L+C+ P Q W+ + I + + + G Y C+ + S
Sbjct: 24 SVTLKCQGAYSPEDQSTQWFHNESLISSQA-SSYFIDAATVDDSGEYRCQTQL---STLS 79
Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
+ +V L+ P +F + L C
Sbjct: 80 DPVQL-----------EVHIGWLLLQAPRWVFKE---------EDPIHLRCHSWKNTALH 119
Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
+ + + G I D G + C S +
Sbjct: 120 KVTYL-QNG--------KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQI 170
Query: 642 HV 643
+
Sbjct: 171 TI 172
Score = 42.2 bits (99), Expect = 4e-04
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 19/84 (22%)
Query: 855 KAVLS---------EGGAVNLECKVIGVPQP-TLKWFKDGRELKAGDIHKIISG---EDG 901
KAV+ E +V L+C+ P+ + +WF + + + I +D
Sbjct: 7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDS 66
Query: 902 TCCLGIYTCEAHNCMGTTSSSAAL 925
G Y C+ T S L
Sbjct: 67 ----GEYRCQTQL--STLSDPVQL 84
Score = 41.4 bits (97), Expect = 6e-04
Identities = 15/143 (10%), Positives = 42/143 (29%), Gaps = 26/143 (18%)
Query: 10 WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS---------RVIARGQ 60
W+ + I + + + G Y C+ + S ++ +
Sbjct: 42 WFHNESLISSQA-SSYFIDAATVDDSGEYRCQTQL---STLSDPVQLEVHIGWLLLQAPR 97
Query: 61 QSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRT--------ELNIRRVRRDDGGRYSV 111
F + D + + + + + ++G+ + I + D G Y
Sbjct: 98 WVFKEEDPIHLRCHSWKNTALHKVTYL---QNGKGRKYFHHNSDFYIPKATLKDSGSYFC 154
Query: 112 TASNESG-YSTAKFELSVESQVP 133
S S+ ++++ +
Sbjct: 155 RGLVGSKNVSSETVQITITQGLA 177
Score = 37.6 bits (87), Expect = 0.010
Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 27/148 (18%)
Query: 95 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 154
I DD G Y + +L V + + K
Sbjct: 55 SYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHI-----GWLLLQAPRWVFKEE---- 103
Query: 155 LLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 213
P ++C N + ++ G + + ++ I + D
Sbjct: 104 ------DPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH--------NSDFYIPKATLKDS 149
Query: 214 GRYSVTASNESG-YSTAKFELSVESQVP 240
G Y S S+ ++++ +
Sbjct: 150 GSYFCRGLVGSKNVSSETVQITITQGLA 177
Score = 37.6 bits (87), Expect = 0.010
Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 27/148 (18%)
Query: 202 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 261
I DD G Y + +L V + + K
Sbjct: 55 SYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHI-----GWLLLQAPRWVFKEE---- 103
Query: 262 LLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
P ++C N + ++ G + + ++ I + D
Sbjct: 104 ------DPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH--------NSDFYIPKATLKDS 149
Query: 321 GRYSVTASNESG-YSTAKFELSVESQVP 347
G Y S S+ ++++ +
Sbjct: 150 GSYFCRGLVGSKNVSSETVQITITQGLA 177
Score = 36.8 bits (85), Expect = 0.018
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 2 GIPTPQLIWYKDNKKIKA----GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
++ + ++ K K D + A KD G+Y C + S + I
Sbjct: 115 NTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDS---GSYFCRGLVGSKNVSSETVQI 170
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 63.0 bits (153), Expect = 2e-11
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 24/167 (14%)
Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF---YFIDLSSVSL 414
I V V P + ++ W + K+ E + + +F ++D S SL
Sbjct: 4 QIYGVVYGNVTFHVPSNVPLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 415 -------FDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
D + + N + +V K P I E +L
Sbjct: 63 TIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSK----PM-------IYWECSNATLT 111
Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
C+V+ +L Y+ + +++ ++ + + C+AVN
Sbjct: 112 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 156
Score = 60.3 bits (146), Expect = 1e-10
Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 23/179 (12%)
Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI---------LKETLGVCH 806
+ V F V ++ P +V W + +V E +N + +
Sbjct: 3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
L I+ L +D+ E++ + N + T F L V + KP + E L
Sbjct: 62 LTIYNLTSSDEDEYEMESPN---ITDTMKF-FLYVLEMVSKPM-------IYWECSNATL 110
Query: 867 ECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
C+V+ LK ++ L++ + T + C+A N + S +
Sbjct: 111 TCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 167
Score = 58.0 bits (140), Expect = 7e-10
Identities = 25/180 (13%), Positives = 60/180 (33%), Gaps = 25/180 (13%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGG--------Y 608
+ + + + VP + + W K+ V E +
Sbjct: 3 QQIYGVVYGNVTFHVPSNVPL--KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
S+ I L + D+ E++ + + + +F ++VL KP + +
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMKFF---LYVLEM--VSKPM-------IYWECSNA 108
Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--GTSSLGSYCCVAKNVMGKAESSTQLT 726
+ C+V+ L+ ++ E L+ ++ T+ + C A N + + +
Sbjct: 109 TLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168
Score = 57.6 bits (139), Expect = 1e-09
Identities = 31/190 (16%), Positives = 51/190 (26%), Gaps = 25/190 (13%)
Query: 251 DIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
I V V P E+ + + F NR G
Sbjct: 4 QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS-- 61
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
L I + D Y + + N + T KF L V V P + L
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-KPMIYWECSNA--------TL 110
Query: 370 LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
E+ T++++ Y+ L + +S + C A N V
Sbjct: 111 TCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVS 159
Query: 430 RSHCSCELSV 439
+ ++
Sbjct: 160 QESEMEVVNC 169
Score = 45.7 bits (108), Expect = 2e-05
Identities = 28/200 (14%), Positives = 48/200 (24%), Gaps = 35/200 (17%)
Query: 144 DIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
I V V P E+ + + F NR G
Sbjct: 4 QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS-- 61
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
L I + D Y + + N + T KF L V V P + L
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-KPMIYWECSNA--------TL 110
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
E+ T+++ + S R + + +
Sbjct: 111 TCEVLEGTDVELKLYQGKEHLRSLR---------------------QKTMSYQWTNLRAP 149
Query: 323 YSVTASNESGYSTAKFELSV 342
+ A N + ++
Sbjct: 150 FKCKAVNRVSQESEMEVVNC 169
Score = 42.6 bits (100), Expect = 2e-04
Identities = 24/164 (14%), Positives = 41/164 (25%), Gaps = 34/164 (20%)
Query: 72 NRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
N F NR G L I + D Y + + N + T KF L V
Sbjct: 40 NSEFRAFSSFKNRVYLDTVSGS--LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEM 95
Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
V P + L E+ T+++ + S R
Sbjct: 96 VS-KPMIYWECSNA--------TLTCEVLEGTDVELKLYQGKEHLRSLR----------- 135
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+ + + + A N + ++
Sbjct: 136 ----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 33.4 bits (76), Expect = 0.19
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 44
+L Y+ + +++ ++ + + C+AVN
Sbjct: 118 TDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 156
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 63.0 bits (153), Expect = 2e-11
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 26/172 (15%)
Query: 357 HDIAVKVGTRARLLVEIRSPTEIK------------IHWYRNDRKLEENKIY--RTQHDG 402
++ G+ L + + + ++ N +K ++ R D
Sbjct: 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK 66
Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG 462
+ + +VS D G + + + V P I E
Sbjct: 67 TNGALRIYNVSKEDRGDYYMRMLHETEDQW-KITMEVYEM--VSKPM-------IYWECS 116
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
+L C+V+ +L Y+ + +++ ++ + + C+AVN
Sbjct: 117 NATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 166
Score = 61.4 bits (149), Expect = 7e-11
Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 29/196 (14%)
Query: 250 HDIAVKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGD---HPIFGNRFRAIN 303
++ G+ L + + N I F +F +R
Sbjct: 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK 66
Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 363
+G L I V ++D G Y + +E+ K + V V P
Sbjct: 67 TNG--ALRIYNVSKEDRGDYYMRMLHETE-DQWKITMEVYEMVSK-PMIYWE-------- 114
Query: 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
+ A L E+ T++++ Y+ L + +S + C
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCK 163
Query: 424 AENAVGRSHCSCELSV 439
A N V + ++
Sbjct: 164 AVNRVSQESEMEVVNC 179
Score = 60.3 bits (146), Expect = 2e-10
Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 25/185 (13%)
Query: 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWY---NKEGVVEASDKYHIMADG-------- 604
V NV A G++ L + + W N++ + + + +
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 605 -LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
++ I + D G++ + + V+ ++ K P +
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSK----PM-------IYW 113
Query: 664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
+ + C+V+ L+ ++ E L+ ++ + + C A N + +
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 173
Query: 722 STQLT 726
+
Sbjct: 174 MEVVN 178
Score = 57.6 bits (139), Expect = 1e-09
Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 37/189 (19%)
Query: 753 EGLKSCQATVNEEFKFTVQVSISPEPK-VSWFR-DDQQVVE--------------SDNVK 796
+ + + A T+ + ++W +Q+++E D V
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63
Query: 797 ILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA 856
+ K L+I+ + D+ ++ ++ + + V + KP
Sbjct: 64 LDKTN---GALRIYNVSKEDRGDYYMRMLHETEDQWK---ITMEVYEMVSKPM------- 110
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG---DIHKIISGEDGTCCLGIYTCEAH 913
+ E L C+V+ LK ++ L++ + + + C+A
Sbjct: 111 IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAP-----FKCKAV 165
Query: 914 NCMGTTSSS 922
N + S
Sbjct: 166 NRVSQESEM 174
Score = 43.0 bits (101), Expect = 1e-04
Identities = 27/206 (13%), Positives = 54/206 (26%), Gaps = 39/206 (18%)
Query: 143 HDIAVKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGD---HPIFGNRFRAIN 196
++ G+ L + + N I F +F +R
Sbjct: 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK 66
Query: 197 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 256
+G L I V ++D G Y + +E+ K + V V P
Sbjct: 67 TNG--ALRIYNVSKEDRGDYYMRMLHETE-DQWKITMEVYEMVSK-PMIYWE-------- 114
Query: 257 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR 316
+ A L E+ T+++ + S R + +
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQGKEHLRSLR---------------------QKTMSYQW 153
Query: 317 RDDGGRYSVTASNESGYSTAKFELSV 342
+ + A N + ++
Sbjct: 154 TNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 40.3 bits (94), Expect = 0.001
Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 33/158 (20%)
Query: 78 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 137
+F +R +G L I V ++D G Y + +E+ K + V V P
Sbjct: 55 ESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHETE-DQWKITMEVYEMVSK-PM 110
Query: 138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 197
+ A L E+ T+++ + S R
Sbjct: 111 IYWE--------CSNATLTCEVLEGTDVELKLYQGKEHLRSLR----------------- 145
Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+ + + + A N + ++
Sbjct: 146 ----QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 36.4 bits (84), Expect = 0.024
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 44
+ +L Y+ + +++ ++ + + C+AVN
Sbjct: 125 LEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 166
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 61.2 bits (148), Expect = 3e-11
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIK--IHWYRNDRKLEENKI----- 395
S FI + VKVG + +++ K I W++ +K
Sbjct: 2 SSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 396 ----YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
+ + + + +G + C CS +L V
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
Score = 60.8 bits (147), Expect = 4e-11
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 26/104 (25%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFP---TPTLQWFKDNEELKP------------GD 695
F+E + G ++F KV PT++WFK +
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 696 VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
+ T + G+Y C S L + +
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111
Score = 59.6 bits (144), Expect = 7e-11
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFD-LNNTIPFSFRAQGDHPI 187
S FI + VKVG + +++ K G H
Sbjct: 2 SSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
F +R E+ I + + + G Y + + + + F+L V P
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117
Score = 59.6 bits (144), Expect = 7e-11
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFD-LNNTIPFSFRAQGDHPI 294
S FI + VKVG + +++ K G H
Sbjct: 2 SSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
F +R E+ I + + + G Y + + + + F+L V P
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117
Score = 58.9 bits (142), Expect = 2e-10
Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 22/118 (18%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVP---QPTLKWFKDG-RELKAGDIHKIISGEDG- 901
F+E+ + + G + KV +PT+KWFK +L + + E
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 902 ------TCCL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKA 943
T + G Y CE S S L E + G +
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSS 125
Score = 56.5 bits (136), Expect = 1e-09
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVVESDNVKILK- 799
+ + FIE + V E+ F +V +P + WF+ + S K L+
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 800 -------ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ ++I + ++C T SC L V
Sbjct: 63 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD--SCSFDLEV 109
Score = 52.7 bits (126), Expect = 3e-08
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPR--SIYWY-NKEGVVEASDKYHI----- 600
+FI++ + K+G +V R +I W+ K + + H+
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 601 --MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
+ + ++I + G ++C T S
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSF 105
Score = 48.5 bits (115), Expect = 6e-07
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 22/98 (22%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIP---TPQLIWYKDNKK---IKAGDIFALTANP 499
F ++ + + G ++ KV P + W+K KAG L
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 500 KDPSSL---------------GTYTCEAVNCMGAAFST 522
+ S + G Y CE +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS 104
Score = 48.1 bits (114), Expect = 9e-07
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
G H F +R E+ I + + + G Y + + + + F+L V
Sbjct: 57 GKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
Query: 136 P 136
P
Sbjct: 117 P 117
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 59.9 bits (145), Expect = 5e-11
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 22/114 (19%)
Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP-TLKWFKDGREL 887
G S +S L +N P P G ++C + P P + W L
Sbjct: 1 GSSGSSGTLTVNGP-----PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55
Query: 888 KAGDIHKI----ISGEDGTCCL------------GIYTCEAHNCMGTTSSSAAL 925
++G + IS E+G IY C A N G+ + L
Sbjct: 56 ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109
Score = 59.5 bits (144), Expect = 1e-10
Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 22/118 (18%)
Query: 429 GRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLI-WYKDNKKI 487
G S S L+V P P + ++C + P P I W +
Sbjct: 1 GSSGSSGTLTVNGP-----PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55
Query: 488 KAGD-----IFALTANPKDPSSL-----------GTYTCEAVNCMGAAFSTSRVIARG 529
++G + ++ S+L Y C A N G+ R+ +G
Sbjct: 56 ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Score = 58.4 bits (141), Expect = 2e-10
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 13/116 (11%)
Query: 332 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKL 390
G S + L+V P I G + ++ IRS P +I W + L
Sbjct: 1 GSSGSSGTLTVN-----GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55
Query: 391 EENKIYR----TQHDGNFYFIDL--SSVSLFDSGRW-TCLAENAVGRSHCSCELSV 439
E R T L S++ D C A N+ G L
Sbjct: 56 ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 56.8 bits (137), Expect = 6e-10
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 15/131 (11%)
Query: 118 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNT 174
G S + L+V P I G + ++ IRS P I + N
Sbjct: 1 GSSGSSGTLTVN-----GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK-ENV 54
Query: 175 IPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFEL 233
+ G + + + L I + R D Y+ TA N G T L
Sbjct: 55 LE-----SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109
Query: 234 SVESQVPDAPA 244
+ P+
Sbjct: 110 KEQGSEMSGPS 120
Score = 56.8 bits (137), Expect = 6e-10
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 15/131 (11%)
Query: 225 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNT 281
G S + L+V P I G + ++ IRS P I + N
Sbjct: 1 GSSGSSGTLTVN-----GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK-ENV 54
Query: 282 IPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFEL 340
+ G + + + L I + R D Y+ TA N G T L
Sbjct: 55 LE-----SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109
Query: 341 SVESQVPDAPA 351
+ P+
Sbjct: 110 KEQGSEMSGPS 120
Score = 51.8 bits (124), Expect = 5e-08
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 22/99 (22%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTP-TLQWFKDNEELKPGDVYQLTG-------- 701
P + S + G +C + P P + W L+ G + T
Sbjct: 14 PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73
Query: 702 -TSSL-----------GSYCCVAKNVMGKAESSTQLTIE 728
S+L Y C A N G +L +
Sbjct: 74 VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 46.4 bits (110), Expect = 3e-06
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
G + SS LT+ P I ++ A E+ + + +P
Sbjct: 1 GSSGSSGTLTV-------------------NGPPIISSTQTQHALHGEKGQIKCFIRSTP 41
Query: 777 EP-KVSWFRDDQQVVESDNVKILKETL----GVCH-LKIHALEVAD-QAEWKCIATNDFG 829
P +++W + + + + ET+ GV L I + AD Q + C A N FG
Sbjct: 42 PPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG 101
Query: 830 QSITSCFLK 838
LK
Sbjct: 102 SDTEIIRLK 110
Score = 44.5 bits (105), Expect = 2e-05
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEAS--DKYHIMADGLGG 607
P I + A G ++C + P P I W KE V+E+ +Y +
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 608 YSI---EINYLEAVDDG-EWKCVATSSSG 632
I I+ + D + C A +S G
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFG 101
Score = 41.8 bits (98), Expect = 1e-04
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQVPD 134
G + + + L I + R D Y+ TA N G T L +
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117
Query: 135 APA 137
P+
Sbjct: 118 GPS 120
Score = 34.9 bits (80), Expect = 0.030
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 17/75 (22%)
Query: 2 GIPTPQLI-WYKDNKKIKAGD-----IFALTANPKDPSSL-----------GTYTCEAVN 44
P P I W +++G + ++ S+L Y C A N
Sbjct: 39 STPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWN 98
Query: 45 CMGAAFSTSRVIARG 59
G+ R+ +G
Sbjct: 99 SFGSDTEIIRLKEQG 113
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 59.1 bits (143), Expect = 6e-11
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 668 VSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGT--------SSLGSYCCVAKNVMGK 718
V+F C P TL W + + P G S G+Y C N+
Sbjct: 28 VTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM 87
Query: 719 AESSTQLTIE 728
+ + L ++
Sbjct: 88 DQGTATLHVQ 97
Score = 56.4 bits (136), Expect = 5e-10
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 346 VPDAPAFI--RRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD 401
P P + +V+ G + +SP + W R ++ +
Sbjct: 5 APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPA-YTLVWTRLHNGKLPSR--AMDFN 61
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
G + +V D+G + C N + L V V
Sbjct: 62 GILT---IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 52.1 bits (125), Expect = 2e-08
Identities = 14/78 (17%), Positives = 18/78 (23%), Gaps = 13/78 (16%)
Query: 857 VLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKI--------ISGEDGTCCLGI 907
+ G V C P TL W + + D G
Sbjct: 21 SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDA----GT 76
Query: 908 YTCEAHNCMGTTSSSAAL 925
Y C N +A L
Sbjct: 77 YVCTGSNMFAMDQGTATL 94
Score = 46.7 bits (111), Expect = 1e-06
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 22/110 (20%)
Query: 132 VPDAPAFI--RRLHDIAVKVGTRARL--LVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHP 186
P P + +V+ G + +SP + N +P
Sbjct: 5 APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--------- 55
Query: 187 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
RA++ +G L IR V+ D G Y T SN L V+
Sbjct: 56 ------RAMDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 46.7 bits (111), Expect = 1e-06
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 22/110 (20%)
Query: 239 VPDAPAFI--RRLHDIAVKVGTRARL--LVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHP 293
P P + +V+ G + +SP + N +P
Sbjct: 5 APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--------- 55
Query: 294 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
RA++ +G L IR V+ D G Y T SN L V+
Sbjct: 56 ------RAMDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 45.2 bits (107), Expect = 4e-06
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADG 604
P P + ++E + + G C P + W S + +G
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYT-LVWTRLHNGKLPSR--AMDFNG 62
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA-YVHV 643
+ I ++ D G + C ++ + Q +A +V V
Sbjct: 63 ----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 43.6 bits (103), Expect = 2e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 86 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
RA++ +G L IR V+ D G Y T SN L V+
Sbjct: 56 RAMDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 42.9 bits (101), Expect = 3e-05
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 7/88 (7%)
Query: 446 KAPFFTKELEAILT--EQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGDIF----ALTAN 498
K T E + + V+ C P L+W + + LT
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIR 67
Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
PS GTY C N T+ +
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 40.6 bits (95), Expect = 2e-04
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
SP + W R + S + + G+ L I ++ +D + C +N F +
Sbjct: 38 SPAYTLVWTRLHNGKLPSRAM----DFNGI--LTIRNVQPSDAGTYVCTGSNMFAMDQGT 91
Query: 835 CFLKLNV 841
L + V
Sbjct: 92 ATLHVQV 98
Score = 34.4 bits (79), Expect = 0.029
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
P L+W + + LT PS GTY C N T+ +
Sbjct: 37 KSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 62.1 bits (150), Expect = 9e-11
Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 46/215 (21%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWY-------------------NKEGVVEASDKY 598
V+ G S IL+C + W+ + + +
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67
Query: 599 HIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESL 658
+ + + D+ ++ CV + + + A ++V + +
Sbjct: 68 SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127
Query: 659 KAVMTDDGLVSFECKVVGF-PTPTLQWFKDNEELKPGDVYQ----------------LTG 701
+VM D C P P + W+++ + L+ L+
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLT 726
TS+L S+ C A + + +
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDS 222
Score = 48.7 bits (115), Expect = 3e-06
Identities = 24/206 (11%), Positives = 56/206 (27%), Gaps = 45/206 (21%)
Query: 358 DIAVKVGTRARLLVEIRSPTEIK-IHWYRNDRKLEENKIYRTQHDGNF------------ 404
+ V G L + + W+ DR ++ + G+
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 405 --------YFIDLSSVSLFDSGRWTCLAE-NAVGRSHCSCELSVLVPKAYKAPFFTKELE 455
+ L+ + D + C+ A G + + L+V K
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128
Query: 456 AILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFA-------------------- 494
+++ + C G P P++ WY++ ++++
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188
Query: 495 --LTANPKDPSSLGTYTCEAVNCMGA 518
L + ++ C A +
Sbjct: 189 STLYLRLRKDDRDASFHCAAHYSLPE 214
Score = 47.5 bits (112), Expect = 7e-06
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 32/139 (23%)
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE-----ELKAVLSE 860
L + +V D+ ++ C+ + + +LNV + KP+ E +V+ +
Sbjct: 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEA-TARLNV---FAKPEATEVSPNKGTLSVMED 133
Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGRELKAGD--------IHKIISGEDGTCCL------ 905
C G P P + W+++G+ L+ + + G L
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL 193
Query: 906 --------GIYTCEAHNCM 916
+ C AH +
Sbjct: 194 RLRKDDRDASFHCAAHYSL 212
Score = 36.3 bits (83), Expect = 0.032
Identities = 34/206 (16%), Positives = 59/206 (28%), Gaps = 30/206 (14%)
Query: 251 DIAVKVGTRARLLVEIRSPTEI------KCQFDLNNTIPFSFRAQGDHPIFGN-----RF 299
+ V G L + S QG R
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 300 RAINRDGRTELNIRRVRRDDGGRYS-VTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
D + L + + D Y V + +G + A L+V ++ P+A
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK-PEATEVSPNKGT 127
Query: 359 IAVKVGTRARLLV-EIR--SPTEIKIHWYRNDRKLE-------ENKIYRTQHDGNFYFID 408
++V + + R +P KI WYRN ++LE E + +
Sbjct: 128 LSVMEDSAQEIATCNSRNGNP-APKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLS 186
Query: 409 LSSVSLFDSGRW------TCLAENAV 428
L+S + C A ++
Sbjct: 187 LTSTLYLRLRKDDRDASFHCAAHYSL 212
Score = 35.9 bits (82), Expect = 0.043
Identities = 24/195 (12%), Positives = 57/195 (29%), Gaps = 15/195 (7%)
Query: 54 RVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS-VT 112
G + L + ++ + Q R D + L + + D Y V
Sbjct: 37 LTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVV 96
Query: 113 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV-EIRS---PTEIKCQ 168
+ +G + A L+V ++ P+A ++V + + R+ +I
Sbjct: 97 RAGAAGTAEATARLNVFAK-PEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWY 155
Query: 169 FDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT--ELNIRRVRRDDGGRYS------VTA 220
+ + + + R + L +R + D + +
Sbjct: 156 RN-GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPE 214
Query: 221 SNESGYSTAKFELSV 235
+ F L++
Sbjct: 215 GRHGRLDSPTFHLTL 229
Score = 32.1 bits (72), Expect = 0.69
Identities = 27/223 (12%), Positives = 57/223 (25%), Gaps = 26/223 (11%)
Query: 144 DIAVKVGTRARLLVEIRSPTEI------KCQFDLNNTIPFSFRAQGDHPIFGN-----RF 192
+ V G L + S QG R
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 193 RAINRDGRTELNIRRVRRDDGGRYS-VTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
D + L + + D Y V + +G + A L+V ++ P+A
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK-PEATEVSPNKGT 127
Query: 252 IAVKVGTRARLLV-EIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 307
++V + + R+ +I + + + + R +
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRN-GQRLEVPVEMNPEGYMTSRTVREASGLLS 186
Query: 308 T--ELNIRRVRRDDGGRYS------VTASNESGYSTAKFELSV 342
L +R + D + + + F L++
Sbjct: 187 LTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229
Score = 31.3 bits (70), Expect = 1.2
Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 68/230 (29%)
Query: 668 VSFECKVVGFPTPT-LQWFKDNEELKPGDVY-----------------------QLTGTS 703
V +C G L+WF + + QL
Sbjct: 18 VILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG 77
Query: 704 SL----------GSY-CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI 752
L Y C V G AE++ +L + +A + +
Sbjct: 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV---------------FAKPEATE-V 121
Query: 753 EGLKSCQATVNEEFKFTVQVSIS---PEPKVSWFRDDQQVVESDNV--------KILKET 801
K + + + + + P PK++W+R+ Q++ + + ++E
Sbjct: 122 SPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREA 181
Query: 802 LGVCH----LKIHALEVADQAEWKCIATNDF--GQSITSCFLKLNVPKHY 845
G+ L + + A + C A G+ ++ HY
Sbjct: 182 SGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY 231
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 56.7 bits (136), Expect = 1e-09
Identities = 23/132 (17%), Positives = 33/132 (25%), Gaps = 22/132 (16%)
Query: 126 LSVESQVP---DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQ 182
Q P R I V G + RL V I + T A+
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR 65
Query: 183 GDHPIFGN-------------------RFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 223
+ R R R+ + ++D G Y+VT N
Sbjct: 66 PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 125
Query: 224 SGYSTAKFELSV 235
G + V
Sbjct: 126 VGEDQVNLTVKV 137
Score = 56.7 bits (136), Expect = 1e-09
Identities = 23/132 (17%), Positives = 33/132 (25%), Gaps = 22/132 (16%)
Query: 233 LSVESQVP---DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQ 289
Q P R I V G + RL V I + T A+
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR 65
Query: 290 GDHPIFGN-------------------RFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 330
+ R R R+ + ++D G Y+VT N
Sbjct: 66 PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 125
Query: 331 SGYSTAKFELSV 342
G + V
Sbjct: 126 VGEDQVNLTVKV 137
Score = 55.9 bits (134), Expect = 2e-09
Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 33/127 (25%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ 61
G P P +IW K + P+D S ++
Sbjct: 44 GDPAPTVIWQKAITQGNKAPARPAPDAPEDTG------------------DSDEWVFDKK 85
Query: 62 SFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST 121
+ + R R R+ + ++D G Y+VT N G
Sbjct: 86 LLCETEG---------------RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 122 AKFELSV 128
+ V
Sbjct: 131 VNLTVKV 137
Score = 46.3 bits (109), Expect = 5e-06
Identities = 20/133 (15%), Positives = 32/133 (24%), Gaps = 32/133 (24%)
Query: 340 LSVESQVP---DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRK------- 389
Q P R I V G + RL V I + W + +
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR 65
Query: 390 ----------------------LEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
E R + + + D G +T +N
Sbjct: 66 PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 125
Query: 428 VGRSHCSCELSVL 440
VG + + V+
Sbjct: 126 VGEDQVNLTVKVI 138
Score = 45.5 bits (107), Expect = 1e-05
Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 44/123 (35%)
Query: 847 KPKFLEELKA------VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH------- 893
PK + V+ G + L+ + G P PT+ W K +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 894 ----------------------KIISGEDGTCCL---------GIYTCEAHNCMGTTSSS 922
++ + +D + G+YT N +G +
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 132
Query: 923 AAL 925
+
Sbjct: 133 LTV 135
Score = 43.6 bits (102), Expect = 5e-05
Identities = 16/136 (11%), Positives = 30/136 (22%), Gaps = 49/136 (36%)
Query: 642 HVLMPKNYRKPRFVESLKAVMTDD------GLVSFECKVVGFPTPTLQWFKDNEELKPGD 695
H + P+ + D + + + G P PT+ W K +
Sbjct: 5 HHHSSRQ-EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAP 63
Query: 696 VYQLT--------------------------------GTSSL----------GSYCCVAK 713
S G Y K
Sbjct: 64 ARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVK 123
Query: 714 NVMGKAESSTQLTIED 729
N +G+ + + + + D
Sbjct: 124 NPVGEDQVNLTVKVID 139
Score = 40.9 bits (95), Expect = 4e-04
Identities = 19/123 (15%), Positives = 28/123 (22%), Gaps = 38/123 (30%)
Query: 442 PKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP-- 499
PK + ++ + L+ + G P P +IW K + P
Sbjct: 14 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 73
Query: 500 --------------------------KDPSSL----------GTYTCEAVNCMGAAFSTS 523
KD S G YT N +G
Sbjct: 74 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 133
Query: 524 RVI 526
V
Sbjct: 134 TVK 136
Score = 36.3 bits (83), Expect = 0.015
Identities = 15/124 (12%), Positives = 30/124 (24%), Gaps = 33/124 (26%)
Query: 748 APKFI-----EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI----- 797
PK + + + V +S P P V W + Q ++
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 798 -----------------------LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
++ T + E D+ + N G+ +
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 132
Query: 835 CFLK 838
+K
Sbjct: 133 LTVK 136
Score = 30.9 bits (69), Expect = 1.1
Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 32/123 (26%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY------------------------ 586
+ + + G L+ + P P ++ W
Sbjct: 19 DCPGRIPDTIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQGNKAPARPAPDAPEDTGDS 77
Query: 587 -----NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
+K+ + E + + + E D+G + + G Q + V
Sbjct: 78 DEWVFDKKLLCETEGRVRVETTK-DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN-LTV 135
Query: 642 HVL 644
V+
Sbjct: 136 KVI 138
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 58.0 bits (140), Expect = 2e-09
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 10/136 (7%)
Query: 382 HWYRND--RKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+N R++ + + D F + +GR+ C R S L +
Sbjct: 42 MIIKNSTYREIGRRLKFWNETDPEFVI---DHMDANKAGRYQCQYRIGHYRFRYSDTLEL 98
Query: 440 LVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNK-----KIKAGDIFA 494
+V Y PF + + +L +SL C IP + K+ +
Sbjct: 99 VVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPAN 158
Query: 495 LTANPKDPSSLGTYTC 510
+ P D + G Y C
Sbjct: 159 FSLGPVDLNVSGIYRC 174
Score = 44.5 bits (105), Expect = 5e-05
Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 4/151 (2%)
Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
I+CQ + + R + E I + + GRY
Sbjct: 28 IQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH 87
Query: 332 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE 391
L + F+ + + G L + + + +L
Sbjct: 88 YRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAK-EGELS 146
Query: 392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
+ +H NF L V L SG + C
Sbjct: 147 LPQHQSGEHPANFS---LGPVDLNVSGIYRC 174
Score = 41.4 bits (97), Expect = 6e-04
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 3/129 (2%)
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
S ++CQ + + + K + + I++++A G ++
Sbjct: 23 DGSVKIQCQAIREAYLTQLMII-KNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQ 80
Query: 625 CVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQW 684
C ++S + +++ Y KP V+ +S C P
Sbjct: 81 CQYRIGHYRFRYSDT-LELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSL 139
Query: 685 FKDNEELKP 693
K+ E P
Sbjct: 140 AKEGELSLP 148
Score = 40.2 bits (94), Expect = 0.001
Identities = 23/180 (12%), Positives = 45/180 (25%), Gaps = 18/180 (10%)
Query: 165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 224
I+CQ + + R + E I + + GRY
Sbjct: 28 IQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH 87
Query: 225 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 284
L + F+ + + G L C F
Sbjct: 88 YRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISL----------TCSSAHIPFDRF 137
Query: 285 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
S +G+ + + + + ++ V + G Y Y+ + + S S
Sbjct: 138 SLAKEGEL----SLPQHQSGEHPANFSLGPVDLNVSGIYRCYGW----YNRSPYLWSFPS 189
Score = 39.1 bits (91), Expect = 0.004
Identities = 17/79 (21%), Positives = 28/79 (35%)
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
I ++ ++C + S L+L V Y KP + VL G ++L
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISL 125
Query: 867 ECKVIGVPQPTLKWFKDGR 885
C +P K+G
Sbjct: 126 TCSSAHIPFDRFSLAKEGE 144
Score = 38.7 bits (90), Expect = 0.005
Identities = 24/191 (12%), Positives = 46/191 (24%), Gaps = 24/191 (12%)
Query: 53 SRVIARGQ------QSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 106
S VI Q+ + + R + E I + +
Sbjct: 17 SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKA 76
Query: 107 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 166
GRY L + F+ + + G L
Sbjct: 77 GRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISL----------T 126
Query: 167 CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY 226
C FS +G+ + + + + ++ V + G Y Y
Sbjct: 127 CSSAHIPFDRFSLAKEGEL----SLPQHQSGEHPANFSLGPVDLNVSGIYRCYGW----Y 178
Query: 227 STAKFELSVES 237
+ + + S S
Sbjct: 179 NRSPYLWSFPS 189
Score = 29.8 bits (67), Expect = 4.0
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 17/94 (18%)
Query: 845 YKKPKFLEELKAVLSEGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKIISG----- 898
+ P + V+ G+V ++C+ L K+ + G K +
Sbjct: 7 FPMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF 66
Query: 899 -------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
G Y C+ S L
Sbjct: 67 VIDHMDANKA----GRYQCQYRIGHYRFRYSDTL 96
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 55.0 bits (132), Expect = 2e-09
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 26/104 (25%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFP---TPTLQWFKDNEELKP------------GD 695
FV + G ++F +V G P ++WFK D
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 696 VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
L GSY C S+ LT+ +
Sbjct: 65 RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 54.2 bits (130), Expect = 4e-09
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFD-LNNTIPFSFRAQGDHPIFGNRF 192
F+ R D V VG + + G H + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
++ EL+I + G Y S + + + F L+V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 54.2 bits (130), Expect = 4e-09
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFD-LNNTIPFSFRAQGDHPIFGNRF 299
F+ R D V VG + + G H + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
++ EL+I + G Y S + + + F L+V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 54.2 bits (130), Expect = 4e-09
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 22/98 (22%)
Query: 850 FLEELKAV-LSEGGAVNLECKVIGVP---QPTLKWFKDGRELKAGDIHKIIS-------- 897
F+ + ++ GG++ +V G P +KWFK + + + +
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 898 GEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
+ L G Y CE S+ L
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
Score = 53.5 bits (128), Expect = 9e-09
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPR--SIYWY-NKEGVVEASDKYHI----- 600
P +F+ ++ + +G S +V + + W+ K + + H+
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 601 --MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
A + + + I + G ++C ++ +
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNF 102
Score = 52.3 bits (125), Expect = 2e-08
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVVESDNVKILK----- 799
F+ + + TV F+ +V+ + P V WF+ + S + L+
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 800 ---ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
+ + L I + A ++C + L V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD--CSNFNLTV 106
Score = 50.8 bits (121), Expect = 7e-08
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 12/103 (11%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIK--IHWYRNDRKLEENKI---------Y 396
F+ R D V VG + + + W++ +K+ Y
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 397 RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ + ++ +G + C + L+V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 46.1 bits (109), Expect = 3e-06
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
G H + + ++ EL+I + G Y S + + + F L+V
Sbjct: 54 GQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 44.6 bits (105), Expect = 9e-06
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 22/98 (22%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIP---TPQLIWYKDNK---KIKAGDIFALTANP 499
F + G +++ +V G P + W+K K G L +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 500 KDPSSL---------------GTYTCEAVNCMGAAFST 522
S + G+Y CE S
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSN 101
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 54.2 bits (130), Expect = 6e-09
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--------VVEASDKYHIMA 602
E + + G + L+C + S+ W G V + KY ++
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRK-NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH 60
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
SI + + D+G +KC+ S S + V VL
Sbjct: 61 HSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKE--VKVIVLAT 102
Score = 46.9 bits (111), Expect = 2e-06
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQH 400
+ I V+ G L + W L+ +K H
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
N I + +V+L D G + CL + + ++ VL
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVSTK-EVKVIVLAT 102
Score = 42.3 bits (99), Expect = 1e-04
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 26/126 (20%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
+ I V+ G L KC L + IF N + +
Sbjct: 2 GSLTNHTETITVEEGQTLTL----------KCVTSLRKNSSLQWLTPSGFTIFLNEYPVL 51
Query: 196 NRDGRTE----------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV----ESQVPD 241
++ + + + + V D G Y ++S ST + ++ V + +
Sbjct: 52 -KNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSV-STKEVKVIVLATMKGEFCR 109
Query: 242 APAFIR 247
P+ R
Sbjct: 110 YPSHWR 115
Score = 42.3 bits (99), Expect = 1e-04
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 26/126 (20%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
+ I V+ G L KC L + IF N + +
Sbjct: 2 GSLTNHTETITVEEGQTLTL----------KCVTSLRKNSSLQWLTPSGFTIFLNEYPVL 51
Query: 303 NRDGRTE----------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV----ESQVPD 348
++ + + + + V D G Y ++S ST + ++ V + +
Sbjct: 52 -KNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSV-STKEVKVIVLATMKGEFCR 109
Query: 349 APAFIR 354
P+ R
Sbjct: 110 YPSHWR 115
Score = 36.5 bits (84), Expect = 0.009
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 19/86 (22%)
Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKK-IKAGDI-------FALTAN 498
T E I E+G T++L+C L W + I + + L +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 499 PKDPSSL----------GTYTCEAVN 514
+ S+ G Y C +
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYS 87
Score = 36.5 bits (84), Expect = 0.010
Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 19/85 (22%)
Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG--------EDGTCCL----- 905
EG + L+C +L+W + + ++ +
Sbjct: 14 EEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV 73
Query: 906 -----GIYTCEAHNCMGTTSSSAAL 925
G+Y C ++ ++ +
Sbjct: 74 TLQDEGVYKCLHYS-DSVSTKEVKV 97
Score = 36.1 bits (83), Expect = 0.014
Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 771 QVSISPEPKVSWFRDDQQVVESDNVKILKE--------TLGVCHLKIHALEVADQAEWKC 822
S+ + W + + +LK + + + + + D+ +KC
Sbjct: 24 VTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKC 83
Query: 823 IATNDFGQSITSCFLKLNV 841
+ +D S+++ +K+ V
Sbjct: 84 LHYSD---SVSTKEVKVIV 99
Score = 33.8 bits (77), Expect = 0.076
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 76 GDHPIFGN-RFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV----E 129
++P+ N +++ ++ + + V D G Y ++S ST + ++ V +
Sbjct: 46 NEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSV-STKEVKVIVLATMK 104
Query: 130 SQVPDAPAFIR 140
+ P+ R
Sbjct: 105 GEFCRYPSHWR 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 8e-09
Identities = 79/544 (14%), Positives = 167/544 (30%), Gaps = 132/544 (24%)
Query: 581 RSIYWYNKEGVVEASDKYHIMADGLGGY--SIEINYLEAVDDGE-------WKCVATSSS 631
+ I ++ V+ D + D EI+++ D W ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 632 GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEEL 691
V++F V ++ NY + +K +++ + + + DN+
Sbjct: 78 MVQKF----VEEVLRINY--KFLMSPIKTEQRQPSMMTRM-----YIEQRDRLYNDNQVF 126
Query: 692 KPGDVY------QL-TGTSSLGSYCCVAKNV----M---GKAESSTQLTIEDIRNHLSEE 737
+V +L L AKNV + GK T + ++ ++ +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRP----AKNVLIDGVLGSGK----TWVALDVCLSY-KVQ 177
Query: 738 DKL------LLLTNNKAPK-FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV 790
K+ L L N +P+ +E L+ ++ + T + S K+
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKL---------- 225
Query: 791 ESDNVKILKETLGVCHLKIHAL----EVADQAEWK-----C---IATNDFGQSITSCFLK 838
+++ L + L V + W C + T + +T FL
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTD-FLS 282
Query: 839 LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD--IHKII 896
H L+ L+ +L K + L RE+ + II
Sbjct: 283 AATTTHI----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----REVLTTNPRRLSII 333
Query: 897 SGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE--KAEEGKKALIVKDPSLSTI 954
A + + + + K K + + SL+ +
Sbjct: 334 --------------------------AESIR-DGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 955 QEEGTSEIYDTPMASIEEREISFSFDGKEVSVSLYET--PDLTEEEAIKVV-EMYADELS 1011
+ +++D S+ F + L D+ + + + VV +++ L
Sbjct: 367 EPAEYRKMFD--RLSV------FPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 1012 EHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDDDLRTDAGLDE-ISEDL 1070
E ++ I +P + + + ++D + T D D LD+ +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 1071 MLHH 1074
HH
Sbjct: 478 G-HH 480
Score = 46.0 bits (108), Expect = 8e-05
Identities = 58/456 (12%), Positives = 126/456 (27%), Gaps = 127/456 (27%)
Query: 96 LNIRRVRRDDG------GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
LN++ + N + S + +++ ++ A +RRL + K
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWT--SRSDHSSNIKLRIHSIQAELRRL--LKSKP 242
Query: 150 GTRARLLV--EIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
LLV +++ F+L+ I + RF+ + D +
Sbjct: 243 YENC-LLVLLNVQNAKAWN-AFNLSCKI-----------LLTTRFKQVT-DFLSAATTTH 288
Query: 208 VRRDDGGRYSVTASNESGYSTAK----FELSVESQVPDAPAFIRRLHDIAVK-VGTRARL 262
+ D + + + ++ + D P + + + + R
Sbjct: 289 ISLDH---------HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR- 338
Query: 263 LVEIRSPTEIKCQFD---------LNNTIPFSFRAQGDHPIFGNRFR--AINRDGRTELN 311
+ +D L I S + + F ++ +
Sbjct: 339 --------DGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPS---AH 386
Query: 312 I-RRVRRDDGGRYSVTASNESGYSTAKF--ELSVESQVP-DAPAFIRRLHDIAVKVGTRA 367
I + S+ + +L S V + I
Sbjct: 387 IPTIL-------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY------- 432
Query: 368 RLLVEIRSPTEIKIH-----WYRNDRKLEENKIYRTQHDGNFYF--------------ID 408
L ++++ E +H Y + + + + D FY +
Sbjct: 433 -LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 409 LSSVSLFDSGRW-------TCLAENAVGRSHCSCELSVLVP-KAYKA------PFFTKEL 454
L + D R+ A NA G L+ L K YK P + + +
Sbjct: 492 LFRMVFLDF-RFLEQKIRHDSTAWNASGSI-----LNTLQQLKFYKPYICDNDPKYERLV 545
Query: 455 EAI---LTEQGTVSLECKVMGIPTPQLIWYKDNKKI 487
AI L + + K + ++ +++ I
Sbjct: 546 NAILDFLPKIEENLICSKYTDL--LRIALMAEDEAI 579
Score = 37.9 bits (87), Expect = 0.020
Identities = 42/224 (18%), Positives = 68/224 (30%), Gaps = 73/224 (32%)
Query: 570 LECQVLVPPWPRSIYWYNKEGVVEASDKYHI----MADGLG-GYSIEI--NYL------- 615
L C++L+ + + + A+ HI + L + YL
Sbjct: 264 LSCKILLTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 616 --EAVD--------------DG-----EWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRF 654
E + DG WK V + + ++VL P YRK F
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRK-MF 375
Query: 655 VESLKAVMTDDGLVSFECKVVGFPTPTLQ--WFKDNEELKPGDVYQLTGTSSLGSYCCVA 712
+ L +V PT L WF + DV + + L Y V
Sbjct: 376 -DRL-SVFPPS---------AHIPTILLSLIWFDVIKS----DVMVV--VNKLHKYSLVE 418
Query: 713 KNVMGKAESSTQLTIEDI----RNHLSEEDKL--LLLTNNKAPK 750
K + ++I I + L E L ++ + PK
Sbjct: 419 KQ-----PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 56.6 bits (136), Expect = 2e-08
Identities = 44/286 (15%), Positives = 79/286 (27%), Gaps = 50/286 (17%)
Query: 455 EAILTEQGTVSLECKVMG-IPTP-QLIWYKDNKKIKAGDIFA--------------LTAN 498
+ T+ L C V G P Q+ W +D + + A LT +
Sbjct: 18 DGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLS 77
Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVE 558
K S TYTC+ + ++ N L P P +F
Sbjct: 78 QKHWLSDRTYTCQ------VTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF----- 126
Query: 559 NVKAKIGTSAILECQV--LVPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIE---- 611
I S + C V L P + W G G ++
Sbjct: 127 -----IRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP 181
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671
+ + ++ ++C T + + P+ + + +
Sbjct: 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRA-APEVYAFATPEWPGSRDKRTLA 240
Query: 672 CKVVGF-PTP-TLQWFKDNEELKPGDVYQLT-------GTSSLGSY 708
C + F P ++QW + +L P + T + S
Sbjct: 241 CLIQNFMPEDISVQWLHNEVQL-PDARHSTTQPRKTKGSGFFVFSR 285
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 54.1 bits (129), Expect = 3e-08
Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 38/205 (18%)
Query: 558 ENVKAKIGTSAILECQVLVPPW------PRSIYWYNKEGVV-----------------EA 594
++V + G ++ C P P +YW+ + E
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 595 SDKYHIMAD-GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQ-FSAAYVHVLMPKNYRKP 652
++ ++ D S+ I D G + VK + +++ + KP
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127
Query: 653 RFVESLKAVMTDDGLVSFECKVVGF----PTPTLQWFKDNEELKPGDVY---QLTGTSSL 705
+ C + G P T W + + +LT T
Sbjct: 128 DI--HFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRP 185
Query: 706 ----GSYCCVAKNVMGKAESSTQLT 726
+ C K + + +
Sbjct: 186 EDHGTNLTCQMKRQGAQVTTERTVQ 210
Score = 52.1 bits (124), Expect = 2e-07
Identities = 30/214 (14%), Positives = 54/214 (25%), Gaps = 44/214 (20%)
Query: 747 KAPKFIEGLK------SCQATVNEEFKFTVQVSISPEPKVSWFRD------DQQVVESDN 794
+ K + + C + ++ SP V WFRD + V ++
Sbjct: 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYS-----SPPLYVYWFRDGEIPYYAEVVATNNP 59
Query: 795 VKILKE------------TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
+ +K C L I + D + + KLN+
Sbjct: 60 DRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLE 119
Query: 843 KHYKKPKFLEELKAVLSEGGAVNLECKVIGV----PQPTLKWFKDGRELKAGDIHKI--- 895
K L G L C + G P T W + + +
Sbjct: 120 VTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSEL 179
Query: 896 ----ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
+ G TC+ ++ +
Sbjct: 180 TLTPRPEDHG----TNLTCQMKRQGAQVTTERTV 209
Score = 48.3 bits (114), Expect = 3e-06
Identities = 23/202 (11%), Positives = 50/202 (24%), Gaps = 34/202 (16%)
Query: 358 DIAVKVGTRARL-------LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD--------- 401
+ V+ G + S + ++W+R+ ++ T +
Sbjct: 9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQ 68
Query: 402 GNFYF----------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT 451
G F + + + D+G + E + + + +
Sbjct: 69 GRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPD 128
Query: 452 KELEAILTEQGTVSLECKVM----GIPTPQLIWYKDNKKIKAGDIFA---LTANPKDPSS 504
L L C + P W + + LT P+
Sbjct: 129 IHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDH 188
Query: 505 LGTYTCEAVNCMGAAFSTSRVI 526
TC+ +T R +
Sbjct: 189 GTNLTCQMKRQGAQV-TTERTV 209
Score = 40.6 bits (94), Expect = 0.001
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 14/172 (8%)
Query: 277 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE---LNIRRVRRDDGGRY--SVTASNES 331
+ + + P RFR + D + + L+I R +D G Y V +
Sbjct: 49 YYAEVVATNNPDRRVKPETQGRFR-LLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDV 107
Query: 332 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRNDRK 389
YS + +L++E I L + TR + + W N
Sbjct: 108 KYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS 167
Query: 390 LEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
+ + R+ + L+ TC + + + + V
Sbjct: 168 PLDPETTRSSE------LTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 39.8 bits (92), Expect = 0.002
Identities = 27/182 (14%), Positives = 53/182 (29%), Gaps = 18/182 (9%)
Query: 59 GQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTE---LNIRRVRRDDGGRYSVTASN 115
G+ + N + P RFR + D + + L+I R +D G Y
Sbjct: 45 GEIPYYAEVVATNNPDRRVKPETQGRFR-LLGDVQKKNCSLSIGDARMEDTGSYFFRVER 103
Query: 116 ESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI 175
+ + + +V ++ G RL + + +
Sbjct: 104 GRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSL------PGSCEAGPPL 157
Query: 176 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG--YSTAKFEL 233
FS+ P+ R +EL + D G + + + +L
Sbjct: 158 TFSWTGNALSPLDPETTR------SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
Query: 234 SV 235
+V
Sbjct: 212 NV 213
Score = 38.3 bits (88), Expect = 0.006
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 18/178 (10%)
Query: 170 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE---LNIRRVRRDDGGRYSVTASNESGY 226
+ + + P RFR + D + + L+I R +D G Y
Sbjct: 49 YYAEVVATNNPDRRVKPETQGRFR-LLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDV 107
Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 286
+ + + +V ++ G RL + + + FS+
Sbjct: 108 KYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSL------PGSCEAGPPLTFSW 161
Query: 287 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG--YSTAKFELSV 342
P+ R +EL + D G + + + +L+V
Sbjct: 162 TGNALSPLDPETTR------SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 30.6 bits (68), Expect = 2.3
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
P SW + ++ ET L + C Q T
Sbjct: 154 GPPLTFSWTGNALSPLDP-------ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTE 206
Query: 835 CFLKLNV 841
++LNV
Sbjct: 207 RTVQLNV 213
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 56.3 bits (135), Expect = 4e-08
Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 20/229 (8%)
Query: 257 GTRARLLVEIRSPTEIKC-QF-------------DLNNTIPFSFRAQGDHPIFGNRFRAI 302
G RA LL+ + C F LN + + G+ PI+
Sbjct: 59 GQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGN-PIWNISGDPT 117
Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 362
R EL I + ++ A E+ V R+ ++ V
Sbjct: 118 RTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVN 177
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI---DLSSVSLFDSGR 419
G A T + + + + + + FI ++ + + D+G+
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237
Query: 420 WTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLEC 468
+ C+ G + + LV K P +L ++ + L
Sbjct: 238 YRCMIRTEGGVGISN--YAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284
Score = 54.4 bits (130), Expect = 2e-07
Identities = 26/170 (15%), Positives = 44/170 (25%), Gaps = 22/170 (12%)
Query: 769 TVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
V+V+ P W T L I + T+
Sbjct: 97 YVKVNNGPLGNPIWNISGDP----------TRTWNRAELAISTFWPNFYQVIFEVITSGH 146
Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
+ +K+ + P FL ++ G +C IG + + G +++
Sbjct: 147 QGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVR 206
Query: 889 --AGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
K+ S G Y C G S+ A L
Sbjct: 207 DAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 256
Score = 54.4 bits (130), Expect = 2e-07
Identities = 23/223 (10%), Positives = 58/223 (26%), Gaps = 21/223 (9%)
Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV-MTDDGLVSFECKVVGF 677
G + V S Q + + L + F + + + GL++ KV
Sbjct: 44 PSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNG 103
Query: 678 PTPTLQWFKD----NEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNH 733
P W + + V + L I++++
Sbjct: 104 PLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITS-----GHQGYLAIDEVK-- 156
Query: 734 LSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVVE 791
+L +++ + + F + D +
Sbjct: 157 -------VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP 209
Query: 792 SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
+K+ + + D +++C+ + G I++
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 252
Score = 50.2 bits (119), Expect = 3e-06
Identities = 54/439 (12%), Positives = 98/439 (22%), Gaps = 114/439 (25%)
Query: 2 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL------------GTYTCEAVNCMGAA 49
P IW + + L + P+ G + V +G
Sbjct: 102 NGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP 161
Query: 50 FSTSRVIAR-GQQSFLDNDDVPFN-RAQGDHPI---------------FGNRFRAINRDG 92
+ + R F A G +R
Sbjct: 162 CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF 221
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 152
N+ + D G+Y E G + + V + P A +
Sbjct: 222 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ------------ 269
Query: 153 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQ-GDHPIFG---------NRFRAINRDGRTE 202
+ T + I + + GD PI + T
Sbjct: 270 ----LASVGATYL--------WIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTS 317
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
I + D SV + T ++ ++ A + +L
Sbjct: 318 YKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADP-----------MRGPRKL 366
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG- 321
V +I +++ PF + + G E V D
Sbjct: 367 EVVEVKSRQITIRWE-----PFG-YNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENS 420
Query: 322 -------------RYS--VTASNESGYSTAKFELSVESQ--VPDAPAFIRRLHDIAVKVG 364
S + N G ++ EL V++ +P A
Sbjct: 421 HPQHTITNLSPYTNVSVKLILMNPEGRKESQ-ELIVQTDEDLPGAV-------------- 465
Query: 365 TRARLLVEIRSPTEIKIHW 383
+ +I + W
Sbjct: 466 -PTESIQGSTFEEKIFLQW 483
Score = 44.4 bits (104), Expect = 2e-04
Identities = 19/187 (10%), Positives = 44/187 (23%), Gaps = 21/187 (11%)
Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS 411
F + + + V++ + W + RT + + +S+
Sbjct: 79 FHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPT------RTWNRAE---LAIST 129
Query: 412 VSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM 471
+ + E+ VL + P F + + + +C +
Sbjct: 130 FWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI 189
Query: 472 GIPTPQLIWYKDNKKIK------------AGDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
G + ++ I + G Y C G
Sbjct: 190 GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249
Query: 520 FSTSRVI 526
S +
Sbjct: 250 ISNYAEL 256
Score = 41.7 bits (97), Expect = 0.001
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 17/135 (12%)
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
+ I+ V TS + V VL R P F+ +
Sbjct: 124 ELAISTFWPNFYQVIFEVITSGHQ-GYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFA 182
Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------------GSYCCVA 712
+F+C +G + + +++ + ++ TSS G Y C+
Sbjct: 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI 242
Query: 713 KNVMGKAESSTQLTI 727
+ G S+ +
Sbjct: 243 RTEGGVGISNYAELV 257
Score = 31.3 bits (70), Expect = 2.1
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 12/71 (16%)
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDG---RELKAGDIHKIISGEDGTCCL--------- 905
S G +N+ KV P W G R ++ + +
Sbjct: 88 NSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQ 147
Query: 906 GIYTCEAHNCM 916
G + +
Sbjct: 148 GYLAIDEVKVL 158
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 51.2 bits (122), Expect = 5e-08
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYW-YNKEGVVEASDKYHIMADGLG 606
P P + E A G+ C P + W + E + +A + + G
Sbjct: 9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68
Query: 607 GYSIE------INYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
G +E + +E +G ++CV ++ G A + +
Sbjct: 69 GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 46.6 bits (110), Expect = 2e-06
Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 20/99 (20%)
Query: 848 PKFLEELKAVL-SEGGAVNLECKVIGVPQP--TLKWFKDGRELKAGDIHKIISGEDGTCC 904
P+ + + G V+ C T W D L+ ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 905 L-----------------GIYTCEAHNCMGTTSSSAALL 926
L G Y C N G++ S A L
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 44.3 bits (104), Expect = 2e-05
Identities = 24/101 (23%), Positives = 32/101 (31%), Gaps = 25/101 (24%)
Query: 652 PRFVESLKAVMTDDGL-VSFECKVVGFPTP--TLQWFKDNEELKPGDVYQ---------- 698
P+ + G VSF C T W DNE L+ ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 699 -LTGTSSL----------GSYCCVAKNVMGKAESST-QLTI 727
+ T+ L G Y CV N G + S LTI
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 43.1 bits (101), Expect = 4e-05
Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVS--WFRDDQQVVESDNVKILKE------ 800
P+ ++ A + FT + S + ++ W D++ + +++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 801 -TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L++ +E + ++C+ +N FG S + L +
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXA-XLTI 111
Score = 42.8 bits (100), Expect = 5e-05
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 20/95 (21%)
Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQL--IWYKDNKKIKAGDIF----------- 493
P T + E G VS C + W DN+ ++ ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 494 ------ALTANPKDPSSLGTYTCEAVNCMGAAFST 522
L + +S G Y C N G+++S
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 42.0 bits (98), Expect = 1e-04
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKIYRTQH---DGNF 404
P + + G+ S + + W ++ L++ ++ H G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 405 YFID-----LSSVSLFDSGRWTCLAENAVGRSHCSC-ELSV 439
L +V G + C+ N G S+ L++
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 36.2 bits (83), Expect = 0.008
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 5/103 (4%)
Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
P + + G+ S + + + +N + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSV 235
+ L +R V G Y SN G S + L++
Sbjct: 71 LMEYTT--ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 36.2 bits (83), Expect = 0.008
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 5/103 (4%)
Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
P + + G+ S + + + +N + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSV 342
+ L +R V G Y SN G S + L++
Sbjct: 71 LMEYTT--ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 33.9 bits (77), Expect = 0.061
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 67 DDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FE 125
D+ A+ ++ + T L +R V G Y SN G S +
Sbjct: 49 DNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAX 108
Query: 126 LSV 128
L++
Sbjct: 109 LTI 111
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 54.5 bits (130), Expect = 7e-08
Identities = 33/301 (10%), Positives = 74/301 (24%), Gaps = 44/301 (14%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
V G S ++ C P+ + K ++ G E++ ++
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQ-PKLLGIETPLP------KKELLLPGNNRKVYELSNVQ- 58
Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVG- 676
+D + C + G P+ + L + ++ C+V G
Sbjct: 59 -EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVE----LAPLPSWQPVGKNLTLRCQVEGG 113
Query: 677 --FPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQ 724
T+ + +ELK + ++ C + +
Sbjct: 114 APRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 725 LTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ-ATVNEEFKFTVQVSISP---EPKV 780
L P L S + V+ + + E +V
Sbjct: 174 ENTSAPYQ----------LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
Query: 781 SWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
DQ++ N + ++ D+ + G +
Sbjct: 224 HLALGDQRL----NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279
Query: 841 V 841
+
Sbjct: 280 I 280
Score = 52.6 bits (125), Expect = 3e-07
Identities = 38/298 (12%), Positives = 85/298 (28%), Gaps = 35/298 (11%)
Query: 154 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 213
++++ + C + + + + R + V+ D
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIETP-----LPKKELLLPGNNRKVYELSNVQED-- 60
Query: 214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 273
+ ++ G STAK L+V P+ VG ++
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVY-WTPERV--ELAPLPSWQPVGK----------NLTLR 107
Query: 274 CQFDLNNTIPFSFRA--QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
CQ + +G+ + + + R G +S +
Sbjct: 108 CQVEGGAPRANLTVVLLRGEKELKREPA--VGEPAEVTTTVLVRRDHHGANFSCRTELDL 165
Query: 332 GYSTAKFELSVES----QVPDAPAFIRRL-HDIAVKVGTRARLLVEIRS---PTEIKIHW 383
+ + + Q PA +L ++V T+ ++ + +E ++H
Sbjct: 166 RPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225
Query: 384 YRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
D++L T + +F SV+ D G +G +V +
Sbjct: 226 ALGDQRLNPT---VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 52.2 bits (124), Expect = 3e-07
Identities = 39/295 (13%), Positives = 73/295 (24%), Gaps = 46/295 (15%)
Query: 455 EAILTEQGTVSLECKVMGIPTPQLIWYK--DNKKIKAGDIFALTANPKDPSSLGTYTCEA 512
+ IL G+V + C L K++ + C +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYS 67
Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
NC + P + +G + L C
Sbjct: 68 -NCPDGQSTAK---------------TFLTVYWTPERVEL---APLPSWQPVGKNLTLRC 108
Query: 573 QVL-VPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT-- 628
QV P ++ E ++ A+ + + + C
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV----TTTVLVRRDHHGANFSCRTELD 164
Query: 629 -SSSGVKQFSAAYVHVLMPKNYRKPRFVESL--KAVMTDDGLVSFECKVVG-FPTPTLQ- 683
G++ F + P L V+ D + C + G FP Q
Sbjct: 165 LRPQGLELFENTSAPYQLQTFV-LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
Query: 684 -WFKDNEELKP-----GDVYQLTGTSSL-----GSYCCVAKNVMGKAESSTQLTI 727
++ L P D + + S+ G+ ++G T T+
Sbjct: 224 HLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 278
Score = 47.9 bits (113), Expect = 8e-06
Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 35/175 (20%)
Query: 771 QVSISPEPKVSWFRDDQQV---VESDNVK--ILKETLG-------VCHLKIHALE-VADQ 817
Q S+SP + V D K ++ L + K++ L V +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED 60
Query: 818 AEWKCIATNDFGQSITSCFLKLNVPKHYKKPKF--LEELKAVLSEGGAVNLECKVIGV-- 873
++ C + GQS FL + P+ L L + G + L C+V G
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWT-----PERVELAPLPSWQPVGKNLTLRCQVEGGAP 115
Query: 874 -PQPTLKWFKDGRELKAGDIHK---------IISGEDGTCCLGIYTCEAHNCMGT 918
T+ + +ELK ++ + ++C +
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHH---GANFSCRTELDLRP 167
Score = 37.1 bits (85), Expect = 0.022
Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 17/157 (10%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES----QVPDAPAFIRRLHDIAVKVGT 151
+ R G +S + + + + Q PA +L
Sbjct: 144 TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV-------- 195
Query: 152 RARLLVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFRAINRDGRTELNIRRVR 209
+ ++E+ + + C D + + A GD + N D + V
Sbjct: 196 -SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGNDSFSAKASVSVT 252
Query: 210 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
+D G +T + G + + +V AP I
Sbjct: 253 AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 49.9 bits (119), Expect = 1e-07
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--------VVEASDKYHIMADGLGGYS 609
+NV G +AIL C+V S+ W N ++ ++ S
Sbjct: 14 QNVTVVEGGTAILTCRVDQND-NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
I ++ + D+G++ C + AY+ VL
Sbjct: 73 ISVSDVSLSDEGQYTCSLFTMPVKTSK--AYLTVLGV 107
Score = 40.6 bits (95), Expect = 2e-04
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL---------EENK 394
S+V + ++ V G A L + + W ++ +N+
Sbjct: 1 SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60
Query: 395 IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
I + + I +S VSL D G++TC ++ L+VL
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTS-KAYLTVLGV 107
Score = 36.8 bits (85), Expect = 0.006
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 19/84 (22%)
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK--------IISGEDGTCCL------ 905
EGG L C+V +L+W ++ D K ++ +
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 906 ----GIYTCEAHNCMGTTSSSAAL 925
G YTC M +S A L
Sbjct: 80 LSDEGQYTCS-LFTMPVKTSKAYL 102
Score = 33.7 bits (77), Expect = 0.064
Identities = 14/67 (20%), Positives = 18/67 (26%), Gaps = 18/67 (26%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDI--------FALTANPKDPSSL-------- 505
GT L C+V L W ++ D L S+
Sbjct: 22 GTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS 81
Query: 506 --GTYTC 510
G YTC
Sbjct: 82 DEGQYTC 88
Score = 32.9 bits (75), Expect = 0.10
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 189
S+V + ++ V G A L + Q+ F D
Sbjct: 1 SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYF---DDKKALR 57
Query: 190 N-RFRAINRDGRT-ELNIRRVRRDDGGRY--SVTASNESGYSTAKFELSVESQVP 240
+ R + +++ V D G+Y S+ T+K L+V
Sbjct: 58 DNRIELVRASWHELSISVSDVSLSDEGQYTCSL---FTMPVKTSKAYLTV--LGV 107
Score = 32.9 bits (75), Expect = 0.10
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 296
S+V + ++ V G A L + Q+ F D
Sbjct: 1 SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYF---DDKKALR 57
Query: 297 N-RFRAINRDGRT-ELNIRRVRRDDGGRY--SVTASNESGYSTAKFELSVESQVP 347
+ R + +++ V D G+Y S+ T+K L+V
Sbjct: 58 DNRIELVRASWHELSISVSDVSLSDEGQYTCSL---FTMPVKTSKAYLTV--LGV 107
Score = 31.8 bits (72), Expect = 0.30
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 76 GDHPIFGN-RFRAINRDGRT-ELNIRRVRRDDGGRY--SVTASNESGYSTAKFELSVESQ 131
D + R + +++ V D G+Y S+ T+K L+V
Sbjct: 51 DDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSL---FTMPVKTSKAYLTV--L 105
Query: 132 VP 133
Sbjct: 106 GV 107
Score = 31.8 bits (72), Expect = 0.34
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 771 QVSISPEPKVSWFRDDQQVVESDNVKILKE--------TLGVCHLKIHALEVADQAEWKC 822
+V + + W QQ + D+ K L++ + + + + ++D+ ++ C
Sbjct: 29 RVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTC 88
Query: 823 IATNDFGQSITSCFLKLNV 841
+ + L V
Sbjct: 89 SLFTM---PVKTSKAYLTV 104
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 54.0 bits (130), Expect = 2e-07
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD-GRELKAGDIHKIISGEDGTCCL--------GIY 908
+ EG V C+ G P P + W + A ++ DGT + G Y
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTY 456
Query: 909 TCEAHNCMGTTSSSAAL 925
C A N G S A L
Sbjct: 457 LCIAANAGGNDSMPAHL 473
Score = 47.8 bits (114), Expect = 1e-05
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEEL---KPGDVYQLTGTSSL----------GSYCCVAKN 714
V F C+ G P P + W + L K + +L G+Y C+A N
Sbjct: 403 VQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAAN 462
Query: 715 VMGKAESSTQLTI 727
G L +
Sbjct: 463 AGGNDSMPAHLHV 475
Score = 47.8 bits (114), Expect = 2e-05
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 531 QSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG 590
+ F D DV + A I ++ + V G + C+ P P +I W +
Sbjct: 366 KEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPP-AILWLSPRK 424
Query: 591 VV---EASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+ +++ + + DG ++E+ Y + D+G + C+A ++ G A++HV
Sbjct: 425 HLVSAKSNGRLTVFPDG----TLEVRYAQVQDNGTYLCIAANAGGNDSMP-AHLHV 475
Score = 44.7 bits (106), Expect = 1e-04
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI---YRTQ 399
A R+ + V G + + I W + L K
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF 438
Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
DG +++ + D+G + C+A NA G L V
Sbjct: 439 PDG---TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 43.2 bits (102), Expect = 4e-04
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 445 YKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
+A ++ + + ++G TV C+ G P P ++W K + + D
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 502 -------PSSLGTYTCEAVNCMGAAFSTSRV 525
GTY C A N G + +
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 42.8 bits (101), Expect = 6e-04
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD---NVKILKETLGVCHLKIHALEV 814
+F + P P + W + +V + + + + G L++ +V
Sbjct: 395 VFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD--GT--LEVRYAQV 450
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNV 841
D + CIA N G S L+V
Sbjct: 451 QDNGTYLCIAANAGGN--DSMPAHLHV 475
Score = 41.2 bits (97), Expect = 0.002
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 158 EIRSPTEIKCQFDLNNTIPFSFRAQGD-HPIF------GNRFRAINRDGRTE------LN 204
IR + D +T+ F RA GD P + A +GR L
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA-KSNGRLTVFPDGTLE 444
Query: 205 IRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
+R + D G Y A+N G + L V S
Sbjct: 445 VRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 41.2 bits (97), Expect = 0.002
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 265 EIRSPTEIKCQFDLNNTIPFSFRAQGD-HPIF------GNRFRAINRDGRTE------LN 311
IR + D +T+ F RA GD P + A +GR L
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA-KSNGRLTVFPDGTLE 444
Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
+R + D G Y A+N G + L V S
Sbjct: 445 VRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 40.1 bits (94), Expect = 0.004
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 89 NRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
+GR L +R + D G Y A+N G + L V S
Sbjct: 430 KSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 30.5 bits (69), Expect = 3.4
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 1 MGIPTPQLIWYKDNKKIKAGDIFALTANPKD---------PSSLGTYTCEAVNCMGAAFS 51
G P P ++W K + + D GTY C A N G
Sbjct: 410 DGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSM 469
Query: 52 TSRV 55
+ +
Sbjct: 470 PAHL 473
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 48.8 bits (116), Expect = 4e-07
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI----- 395
S S + L D+ V G A +++ T I+ W+ N +L+ N+
Sbjct: 2 SSGSSGT--ARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTWFLNGEELKSNEPEGQVE 57
Query: 396 -----YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
YR + G + + L +V DSG + S L++
Sbjct: 58 PGALRYRIEQKGLQHRLILHAVKHQDSGALVGF---SCPGVQDSAALTIQES 106
Score = 44.6 bits (105), Expect = 1e-05
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL----- 802
+ + GL+ Q E+ F++ +S + +WF + +++ ++ ++
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLS--TIIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 803 ---GVCH-LKIHALEVADQ-AEWKCIATN 826
G+ H L +HA++ D A
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPG 94
Score = 39.2 bits (91), Expect = 0.001
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
+ + L+ V + +G + + Q T WF +G ELK+ + + +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRI 65
Score = 36.9 bits (85), Expect = 0.006
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP 186
S S + L D+ V G A +++ + + + LN S +G
Sbjct: 2 SSGSSGT--ARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVE 57
Query: 187 IFGNRFRAINRDGRT-ELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSVE 236
R+R I + G L + V+ +D G + +A L+++
Sbjct: 58 PGALRYR-IEQKGLQHRLILHAVKHQDSGALVGFSCPGVQ--DSAA--LTIQ 104
Score = 36.9 bits (85), Expect = 0.006
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP 293
S S + L D+ V G A +++ + + + LN S +G
Sbjct: 2 SSGSSGT--ARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVE 57
Query: 294 IFGNRFRAINRDGRT-ELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSVE 343
R+R I + G L + V+ +D G + +A L+++
Sbjct: 58 PGALRYR-IEQKGLQHRLILHAVKHQDSGALVGFSCPGVQ--DSAA--LTIQ 104
Score = 35.0 bits (80), Expect = 0.029
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
R V L+ V DG F + T WF + EELK + +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGA 60
Score = 28.0 bits (62), Expect = 6.5
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 63 FLDNDDVPFNRAQGDHPIFGNRFRAINRDGRT-ELNIRRVRR-DDGGRYSVTASNESGYS 120
FL+ +++ N +G R+R I + G L + V+ D G +
Sbjct: 41 FLNGEELKSNEPEGQVEPGALRYR-IEQKGLQHRLILHAVKHQDSGALVGFSCPGVQ--D 97
Query: 121 TAKFELSVE 129
+A L+++
Sbjct: 98 SAA--LTIQ 104
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 52.1 bits (125), Expect = 8e-07
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
E+ S AP + D+ + G A L + R+P + W + + +
Sbjct: 341 VEVDQASFQCSAPFIMDAPRDLNISEGRMAEL--KCRTPPMSSVKWLLPNGTVLSHASRH 398
Query: 398 TQ----HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ +DG ++ S V L D+G +TC+ N G S+ S L+V
Sbjct: 399 PRISVLNDGT---LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 47.0 bits (112), Expect = 2e-05
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDGREL--KAGDIHKIISGEDGTCCL--------GI 907
+SEG L+C+ P ++KW + A +I DGT G+
Sbjct: 364 ISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGV 421
Query: 908 YTCEAHNCMGTTSSSAAL 925
YTC N G +++SA L
Sbjct: 422 YTCMVTNVAGNSNASAYL 439
Score = 46.3 bits (110), Expect = 5e-05
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
AP + ++ G A L+C+ PP S+ W G V + H L
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMS-SVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
++ +++ D G + C+ T+ +G ++AY++V
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAG-NSNASAYLNV 441
Score = 43.2 bits (102), Expect = 4e-04
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 124 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 183
E+ S AP + D+ + G A L + +K +
Sbjct: 341 VEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVL-------- 392
Query: 184 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
H R + DG T LN V D G Y+ +N +G S A L+V +
Sbjct: 393 SHASRHPRIS-VLNDG-T-LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449
Score = 43.2 bits (102), Expect = 4e-04
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 231 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 290
E+ S AP + D+ + G A L + +K +
Sbjct: 341 VEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVL-------- 392
Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
H R + DG T LN V D G Y+ +N +G S A L+V +
Sbjct: 393 SHASRHPRIS-VLNDG-T-LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449
Score = 41.7 bits (98), Expect = 0.001
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
LN V D G Y+ +N +G S A L+V +
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449
Score = 40.9 bits (96), Expect = 0.002
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV--ESDNVKILKETLGVC 805
AP ++ + + + + P V W + V+ S + +I G
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT- 408
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L + ++D + C+ TN G ++ LNV
Sbjct: 409 -LNFSHVLLSDTGVYTCMVTNVAGN--SNASAYLNV 441
Score = 40.5 bits (95), Expect = 0.003
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEEL------KPGDVYQLTGT 702
P +++ + + +G + +C+ P +++W N + P GT
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 703 --------SSLGSYCCVAKNVMGKAESSTQLTI 727
S G Y C+ NV G + +S L +
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 38.2 bits (89), Expect = 0.014
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 18/81 (22%)
Query: 458 LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-------------GDIFALTANPKDPSS 504
++E L+C+ P + W N + + G + D
Sbjct: 364 ISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDT-- 419
Query: 505 LGTYTCEAVNCMGAAFSTSRV 525
G YTC N G + +++ +
Sbjct: 420 -GVYTCMVTNVAGNSNASAYL 439
Score = 30.9 bits (70), Expect = 2.3
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 16/65 (24%)
Query: 4 PTPQLIWYKDNKKIKA-------------GDIFALTANPKDPSSLGTYTCEAVNCMGAAF 50
P + W N + + G + D G YTC N G +
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDT---GVYTCMVTNVAGNSN 434
Query: 51 STSRV 55
+++ +
Sbjct: 435 ASAYL 439
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 51.7 bits (124), Expect = 8e-07
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY- 396
EL AP + D+ V G A L + + W + + + Y
Sbjct: 330 GELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYK 388
Query: 397 ---RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
DG ++ ++V++ D+G +TC+ N+VG + S L+V
Sbjct: 389 VRIAVLSDGT---LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 47.4 bits (113), Expect = 2e-05
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
AP+ ++ ++ G +A L+C+ S+ W G V Y + L
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTSLT--SVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
++ + D G + C+ ++S G ++A ++V
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVG-NTTASATLNVT 432
Score = 45.5 bits (108), Expect = 6e-05
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDGREL--KAGDIHKIISGEDGTCCL--------GI 907
++EG A L+C+ ++ W + +I DGT G+
Sbjct: 353 VTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGM 411
Query: 908 YTCEAHNCMGTTSSSAAL 925
YTC N +G T++SA L
Sbjct: 412 YTCMVSNSVGNTTASATL 429
Score = 42.0 bits (99), Expect = 9e-04
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV--ESDNVKILKETLGVCH 806
P +E T + + S + VSW + V+ + V+I + G
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAS-TSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT-- 398
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
L + V D + C+ +N G T+ LNV
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGN--TTASATLNV 431
Score = 41.3 bits (97), Expect = 0.001
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 15/80 (18%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVY----QLTGTSSL----------GSYCCVAK 713
+C+ ++ W N + Y + +L G Y C+
Sbjct: 359 AELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVS 417
Query: 714 NVMGKAESSTQLTIEDIRNH 733
N +G +S L + +H
Sbjct: 418 NSVGNTTASATLNVTGTHHH 437
Score = 40.9 bits (96), Expect = 0.002
Identities = 17/75 (22%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 173 NTIPFSFRAQGDHPIF------GNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTA 220
RA G R LN V D G Y+
Sbjct: 357 MAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMV 416
Query: 221 SNESGYSTAKFELSV 235
SN G +TA L+V
Sbjct: 417 SNSVGNTTASATLNV 431
Score = 40.9 bits (96), Expect = 0.002
Identities = 17/75 (22%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 280 NTIPFSFRAQGDHPIF------GNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTA 327
RA G R LN V D G Y+
Sbjct: 357 MAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMV 416
Query: 328 SNESGYSTAKFELSV 342
SN G +TA L+V
Sbjct: 417 SNSVGNTTASATLNV 431
Score = 39.0 bits (91), Expect = 0.007
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
LN V D G Y+ SN G +TA L+V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 38.6 bits (90), Expect = 0.009
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 458 LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GT 507
+TE L+C+ + W N + + + +L G
Sbjct: 353 VTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGM 411
Query: 508 YTCEAVNCMGAAFSTSRV 525
YTC N +G +++ +
Sbjct: 412 YTCMVSNSVGNTTASATL 429
Score = 30.1 bits (68), Expect = 4.3
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 53
+ W N + + + +L G YTC N +G +++
Sbjct: 368 SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASA 427
Query: 54 RV 55
+
Sbjct: 428 TL 429
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 51.0 bits (122), Expect = 1e-06
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTC 910
G + + C + ++ + + +S +G G+YTC
Sbjct: 259 HLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTC 318
Query: 911 EAHNCMGTTSSSAAL 925
A + S L
Sbjct: 319 YAMGETFNETLSVEL 333
Score = 47.5 bits (113), Expect = 1e-05
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSLGT 507
T+++ C ++ N+++ + GD+F +D G
Sbjct: 259 HLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDG---GV 315
Query: 508 YTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
YTC A+ T V + L N+ P P F K
Sbjct: 316 YTCYAMGETFNE--TLSVELKVYNFTLHGHHDTLNAAADPWSHPQFEK 361
Score = 47.5 bits (113), Expect = 1e-05
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 12/72 (16%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPG--DVYQLTGTSSL----------GSYCCVAKNV 715
++ C + NE++ + L G Y C A
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGE 323
Query: 716 MGKAESSTQLTI 727
S +L +
Sbjct: 324 TFNETLSVELKV 335
Score = 43.7 bits (103), Expect = 3e-04
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYFIDLSSV 412
+ +G + + + K+ ++ ++ + + + +G+ + V
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD---LFFKKV 308
Query: 413 SLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ D G +TC A S EL V
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKVYNF 338
Score = 40.6 bits (95), Expect = 0.002
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 82 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
G+ R+G +L ++V+ +DGG Y+ A E+ T EL V +
Sbjct: 291 GSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343
Score = 40.6 bits (95), Expect = 0.002
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
G+ R+G +L ++V+ +DGG Y+ A E+ T EL V +
Sbjct: 291 GSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343
Score = 40.6 bits (95), Expect = 0.002
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
G+ R+G +L ++V+ +DGG Y+ A E+ T EL V +
Sbjct: 291 GSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343
Score = 40.6 bits (95), Expect = 0.002
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
+ +A + + KV ++QV+ + + G L ++V D
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--LFFKKVQVED 312
Query: 817 QAEWKCIATNDFGQSITSCFLKLNV 841
+ C A + + ++L V
Sbjct: 313 GGVYTCYAMGETFN--ETLSVELKV 335
Score = 40.2 bits (94), Expect = 0.003
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVV-EASDKYHIMADGLGGYSIEINY 614
+ +A +G + + C + + E V+ + S+ + +G +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG----DLFFKK 307
Query: 615 LEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
++ D G + C A + + S + V
Sbjct: 308 VQVEDGGVYTCYAMGETFNETLS-VELKV 335
Score = 30.2 bits (68), Expect = 4.4
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 14/65 (21%)
Query: 2 GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSLGTYTCEAVNCMGAAF 50
++ N+++ + GD+F +D G YTC A+
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDG---GVYTCYAMGETFNET 328
Query: 51 STSRV 55
+ +
Sbjct: 329 LSVEL 333
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 49.1 bits (116), Expect = 1e-06
Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 42/172 (24%)
Query: 371 VEIRSPTE--IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVS-LFDSGRWTCLAENA 427
VE+ P + + W +N ++L + + L S + DSG + C +
Sbjct: 17 VELTCPLDSDENLKWEKNGQEL---------PQKHDKHLVLQDFSEVEDSGYYVCYTPAS 67
Query: 428 VGRSHCSCELSVLVPKAYKAPFFTKELEA---------------------ILTEQGTVSL 466
++ + V K K+ G+V L
Sbjct: 68 NKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLL 127
Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVN 514
C G+ + W KD I + + L N KDP GTY C+
Sbjct: 128 TC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPR--GTYQCQGAK 174
Score = 46.0 bits (108), Expect = 2e-05
Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 46/184 (25%)
Query: 764 EEFKFTVQVS---------ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL-E 813
E ++ V +S + + + W ++ Q++ + + HL + E
Sbjct: 4 ENIEYKVSISGTSVELTCPLDSDENLKWEKNGQELPQKHD----------KHLVLQDFSE 53
Query: 814 VADQAEWKCIATN--------------DFGQSITSCFLKLNVPKHYKKPKFLEELKAVL- 858
V D + C + K + K K + KA
Sbjct: 54 VEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNL 113
Query: 859 ------SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKII--SGEDGTCCLGIYTC 910
G+V L C G+ T+KW KDG + + K G + G Y C
Sbjct: 114 VQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQC 170
Query: 911 EAHN 914
+
Sbjct: 171 QGAK 174
Score = 39.9 bits (92), Expect = 0.001
Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 44/187 (23%)
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
GTS L C + ++ W + H++ ++ E D G +
Sbjct: 14 GTSVELTCPLDSDE---NLKWEKNGQELPQKHDKHLVLQ---------DFSEVEDSGYYV 61
Query: 625 CVATSSSGVKQF-------------SAAYVHVLMPKNYRKPRFVESLKAVMT-------D 664
C +S+ A K+ K ++ KA
Sbjct: 62 CYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL---GSYCCVAKNVMGK 718
DG V C G T++W KD + P + + T G ++ G+Y C +
Sbjct: 122 DGSVLLTC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAK---E 175
Query: 719 AESSTQL 725
+ Q+
Sbjct: 176 TSNPLQV 182
Score = 34.5 bits (78), Expect = 0.091
Identities = 13/154 (8%), Positives = 34/154 (22%), Gaps = 32/154 (20%)
Query: 300 RAINRDGRTELNIRRV-RRDDGGRYSVTASNESGYSTAKFELSV------------ESQV 346
+ + + L ++ +D G Y + + + V +
Sbjct: 36 QELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDA 95
Query: 347 PDAPAFI---------RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
A + + L + T I W ++ + +
Sbjct: 96 KKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATK 152
Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
+ L + + G + C
Sbjct: 153 NTWN-------LGNNAKDPRGTYQCQGAKETSNP 179
Score = 30.6 bits (68), Expect = 1.9
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 2 GIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVN 44
G+ + W KD I + + L N KDP GTY C+
Sbjct: 130 GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPR--GTYQCQGAK 174
Score = 30.2 bits (67), Expect = 2.7
Identities = 22/156 (14%), Positives = 40/156 (25%), Gaps = 44/156 (28%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSS-LGTYTCEAVNCMGAAFSTSRVIAR---- 58
L W K+ +++ L G Y C + + AR
Sbjct: 25 SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPA--SNKNTYLYLKARVGSA 82
Query: 59 ---------------------GQQSFLDNDDVPFNRAQGDHPIF---------------G 82
G Q+ + V + ++GD + G
Sbjct: 83 DDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDG 142
Query: 83 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 118
+ +N T N+ +D G Y + E+
Sbjct: 143 SIISPLNATKNT-WNLGNNAKDPRGTYQCQGAKETS 177
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 47.4 bits (112), Expect = 1e-06
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPR-SIYWY-------NKEGVVEASDKYHIMA 602
+ + ++ +G +L C W +K+ V
Sbjct: 9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68
Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
++ I+ + D G + C A+S K+ S +V V
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEK 111
Score = 46.7 bits (110), Expect = 3e-06
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%)
Query: 143 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
H I + VG + L R+ + F+ + + + + + +
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
L I V R D G Y+ AS+ + V F+
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----EKPFVA 115
Score = 46.7 bits (110), Expect = 3e-06
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%)
Query: 250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
H I + VG + L R+ + F+ + + + + + +
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 354
L I V R D G Y+ AS+ + V F+
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----EKPFVA 115
Score = 46.7 bits (110), Expect = 3e-06
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 357 HDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYR--------TQHDGNFYF 406
H I + VG + L I +W K + K+ ++
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
+ + V+ D G +TC A + + S + V
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 43.2 bits (101), Expect = 4e-05
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
+ + L I V R D G Y+ AS+ + V F+
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----EKPFVA 115
Score = 42.8 bits (100), Expect = 6e-05
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 19/87 (21%)
Query: 858 LSEGGAVNLECKVIGVPQP--TLKWFKDGRELKAGDIHKIIS-------GEDGTCCL--- 905
LS G + L C W + + + + L
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 906 -------GIYTCEAHNCMGTTSSSAAL 925
G+YTC A + + T +S +
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFV 106
Score = 41.6 bits (97), Expect = 2e-04
Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 23/85 (27%)
Query: 668 VSFECKVVGFPTPTLQ--WFKDNEELKPGDV-----------YQLTGTSSL--------- 705
+ C + W + + + + S+L
Sbjct: 26 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSD 85
Query: 706 -GSYCCVAKNVMGKAESSTQLTIED 729
G Y C A + + ++ST + + +
Sbjct: 86 QGLYTCAASSGLMTKKNSTFVRVHE 110
Score = 40.1 bits (93), Expect = 5e-04
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRD---------DQQVVESDNVKILKETLGVCHLKI 809
+ +V E+ + + + + + + L I
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78
Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
+ +DQ + C A++ S F++++
Sbjct: 79 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 39.3 bits (91), Expect = 8e-04
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 19/83 (22%)
Query: 463 TVSLECKVMGIPTP--QLIWYKDNKKIKAGDIFALTANP-------KDPSSL-------- 505
+ L C W + K + + K S+L
Sbjct: 25 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 84
Query: 506 --GTYTCEAVNCMGAAFSTSRVI 526
G YTC A + + +++ V
Sbjct: 85 DQGLYTCAASSGLMTKKNSTFVR 107
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 48.3 bits (115), Expect = 3e-06
Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 16/141 (11%)
Query: 382 HWYRNDR--KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
+ + + ++ F S++ +GR+ C + VG S S L +
Sbjct: 36 RLDKEESPAPWDRQNPLEPKNKARFSI---PSMTEDYAGRYRCYYRSPVGWSQPSDPLEL 92
Query: 440 LVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKI----------KA 489
++ AY P + ++T +V+L C+ P + K+
Sbjct: 93 VMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RSPMDTFLLCKERAAHPLLCLRSEHGAQ 151
Query: 490 GDIFALTANPKDPSSLGTYTC 510
+P GTY C
Sbjct: 152 QHQAEFPMSPVTSVHGGTYRC 172
Score = 40.2 bits (94), Expect = 0.001
Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 10/125 (8%)
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 152
+ +I + D GRY + G+S L + + + L V G
Sbjct: 57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKS 116
Query: 153 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 212
V + CQ + + HP+ R + + E + V
Sbjct: 117 ----VTLL------CQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVH 166
Query: 213 GGRYS 217
GG Y
Sbjct: 167 GGTYR 171
Score = 40.2 bits (94), Expect = 0.001
Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 10/125 (8%)
Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
+ +I + D GRY + G+S L + + + L V G
Sbjct: 57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKS 116
Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
V + CQ + + HP+ R + + E + V
Sbjct: 117 ----VTLL------CQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVH 166
Query: 320 GGRYS 324
GG Y
Sbjct: 167 GGTYR 171
Score = 39.4 bits (92), Expect = 0.002
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 3/113 (2%)
Query: 773 SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
+ +++ + + I ++ ++C + G S
Sbjct: 28 GTLEAREYRLDKEESPAPWDRQNPLEPKNKA--RFSIPSMTEDYAGRYRCYYRSPVGWSQ 85
Query: 833 TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR 885
S L+L + Y KP +++ G +V L C+ P T K+
Sbjct: 86 PSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RSPMDTFLLCKERA 137
Score = 36.3 bits (84), Expect = 0.025
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 366
+ +I + D GRY + G+S L + + + L V G
Sbjct: 57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKS 116
Query: 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY--FIDLSSVSLFDSGRWTC 422
LL + RSP + + + F +S V+ G + C
Sbjct: 117 VTLLCQSRSPMD-TFLLCKERAAHPLLCLRSEHGAQQHQAEFP-MSPVTSVHGGTYRC 172
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 49.5 bits (117), Expect = 3e-06
Identities = 26/200 (13%), Positives = 47/200 (23%), Gaps = 33/200 (16%)
Query: 545 MPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG 604
+ P P + + G S L C + P +++W S
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWV-LRKPAAGSHPSRWAGM- 58
Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTD 664
G + + ++ D G + C ++ V +P P + +
Sbjct: 59 --GRRLLLRSVQLHDSGNYSCYRAGRP----AGTVHLLVDVP-----PEEPQLSCFRKSP 107
Query: 665 DGLVSFECKVV---GFPTP-TLQWFKDNEELKPGDVYQLTGTSSLGSYCC---------- 710
V E T L K + + C
Sbjct: 108 LSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSS 167
Query: 711 ------VAKNVMGKAESSTQ 724
+ +G S TQ
Sbjct: 168 FYIVSMCVASSVGSKFSKTQ 187
Score = 43.3 bits (101), Expect = 3e-04
Identities = 27/169 (15%), Positives = 45/169 (26%), Gaps = 18/169 (10%)
Query: 346 VPDAPAFIRRLHDIAVKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
PA + G L + +HW +
Sbjct: 3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR- 61
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTV 464
+ L SV L DSG ++C GR + L V VP P + + V
Sbjct: 62 --LLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVP-----PEEPQLSCFRKSPLSNV 111
Query: 465 SLECKVM---GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTC 510
E + T ++ + + A D + ++C
Sbjct: 112 VCEWGPRSTPSLTTKAVLLVRKFQNSPAEDF---QEPCQYSQESQKFSC 157
Score = 32.9 bits (74), Expect = 0.50
Identities = 12/71 (16%), Positives = 17/71 (23%), Gaps = 15/71 (21%)
Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISG----------EDGTCCLGIYT 909
G +V L C + T+ W + G D G Y+
Sbjct: 21 GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDS----GNYS 76
Query: 910 CEAHNCMGTTS 920
C T
Sbjct: 77 CYRAGRPAGTV 87
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 49.5 bits (118), Expect = 3e-06
Identities = 45/268 (16%), Positives = 79/268 (29%), Gaps = 43/268 (16%)
Query: 668 VSFECKVVGF-PTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLT 726
C V P +QWF+ G +L G + V + +
Sbjct: 21 AILHCTVTSLIPVGPIQWFRG-----AGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75
Query: 727 IEDIRNHLSEED----------------------KLLLLTNNKAPKFIEGLKSCQATVNE 764
I I N ++ D L K + + +AT
Sbjct: 76 IS-ISN-ITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQH 133
Query: 765 EFKFTVQVS-ISPEP-KVSWFRDDQQVVESDNVKILKETL------GVCHLKIHALEVAD 816
FT + SP + WF++ ++ SD + K+
Sbjct: 134 TVSFTCESHGFSPRDITLKWFKNGNEL--SDFQTNVDPVGESVSYSIHSTAKVVLTREDV 191
Query: 817 QAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQ 875
++ C + Q N+ + + P LE + + VN+ C+V PQ
Sbjct: 192 HSQVICEVAHVTLQG-DPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ 250
Query: 876 P-TLKWFKDGRELKAGDIHKIISGEDGT 902
L W ++G + + +DGT
Sbjct: 251 RLQLTWLENGNVSRTETASTVTENKDGT 278
Score = 43.4 bits (102), Expect = 3e-04
Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 40/237 (16%)
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKF----ELSVESQVPDAPAFIRRLHDIAVKVGT 365
++I + D G Y G +F + + + + A T
Sbjct: 76 ISISNITPADAGTYYC-VKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134
Query: 366 RARL--LVEIRSPTEIKIHWYRNDRKLEENKI-YRTQHDGNFYFIDLSSVSLFDSGRW-- 420
SP +I + W++N +L + + + Y + S + R
Sbjct: 135 -VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYS--IHSTAKVVLTREDV 191
Query: 421 ----TCLAENAVGRS---HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMG- 472
C + + + LS + + + + V++ C+V
Sbjct: 192 HSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVR----AENQVNVTCQVRKF 247
Query: 473 IPTP-QLIWYKDNKKIKAGDIFA--------------LTANPKDPSSLGTYTCEAVN 514
P QL W ++ + L N TC+ +
Sbjct: 248 YPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH 304
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 49.1 bits (117), Expect = 4e-06
Identities = 37/237 (15%), Positives = 60/237 (25%), Gaps = 26/237 (10%)
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPDA--PAFIRRLHD 251
R + N+ V G Y+ S+ T S V V +
Sbjct: 69 GRIFQESFNMSPVTTAHAGNYTCRGSH-PHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127
Query: 252 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
VK G R V ++ C D+ F + + + + +
Sbjct: 128 PLVKSGER----VILQ------CWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFS 177
Query: 312 IRRVRRDDGGRYSVTASNE------SGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGT 365
I + G Y S S S ++ V P + V+ G
Sbjct: 178 IGPMMLALAGTYRCYGSVTHTPYQLSAPS-DPLDIVV--TGPYEKPSLSAQPGPKVQAGE 234
Query: 366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
L RS H R E ++ + + D G + C
Sbjct: 235 SVTLSCSSRSSY-DMYHLSREGGA-HERRLPAVRKVNRTFQADFPLGPATHGGTYRC 289
Score = 48.3 bits (115), Expect = 6e-06
Identities = 39/229 (17%), Positives = 65/229 (28%), Gaps = 29/229 (12%)
Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPDA--PAFIRRLHD 358
R + N+ V G Y+ S+ T S V V +
Sbjct: 69 GRIFQESFNMSPVTTAHAGNYTCRGSH-PHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127
Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG----NFYFIDLSSVSL 414
VK G R L E ++ + +++ HDG NF + + L
Sbjct: 128 PLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFS---IGPMML 183
Query: 415 FDSGRWTCLAENA---VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM 471
+G + C S S L ++V Y+ P + + + +V+L C
Sbjct: 184 ALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSC-SS 242
Query: 472 GIPTPQLIWYKDNK---------KIKAGDIFAL-TANPKDPSSLGTYTC 510
++ + A P GTY C
Sbjct: 243 RSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHG--GTYRC 289
Score = 41.4 bits (97), Expect = 0.001
Identities = 39/273 (14%), Positives = 68/273 (24%), Gaps = 35/273 (12%)
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPDA--PAFIRRLHD 144
R + N+ V G Y+ S+ T S V V +
Sbjct: 69 GRIFQESFNMSPVTTAHAGNYTCRGSH-PHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127
Query: 145 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 204
VK G R V ++ C D+ F + + + + +
Sbjct: 128 PLVKSGER----VILQ------CWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFS 177
Query: 205 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLL 263
I + G Y S + P P I + +
Sbjct: 178 IGPMMLALAGTYRCYGSVTHT--------PYQLSAPSDPLDIVVTGPYEKPSLSAQPGPK 229
Query: 264 VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRY 323
V+ + C + + R G H R + + + GG Y
Sbjct: 230 VQAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRK--VNRTFQADFPLGPATHGGTY 287
Query: 324 SVTASNESGYSTAKFELS-----VESQVPDAPA 351
S + + +E S + V P+
Sbjct: 288 RCFGS----FRHSPYEWSDPSDPLLVSVTGNPS 316
Score = 39.9 bits (93), Expect = 0.004
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 19/164 (11%)
Query: 773 SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND---FG 829
+++D+ + + +I +E+ + + A + C ++ G
Sbjct: 47 YRHRFNNFMLYKEDRIHIPIFHGRIFQESF-----NMSPVTTAHAGNYTCRGSHPHSPTG 101
Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA 889
S S + + V +++KP L ++ G V L+C + + K+G
Sbjct: 102 WSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFE-HFFLHKEGISKDP 160
Query: 890 GDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSA 923
+ I G Y C SA
Sbjct: 161 SRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSA 204
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 46.1 bits (109), Expect = 2e-05
Identities = 24/180 (13%), Positives = 47/180 (26%), Gaps = 8/180 (4%)
Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 362
R + + I + G+YS +S L + + V
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 114
Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
G + + + T + + R + Y + F L V+ G + C
Sbjct: 115 SGEKVTFYCRLDTATSM-FLLLKEGRSSHVQRGYG-KVQAEFP---LGPVTTAHRGTYRC 169
Query: 423 LAENAVGR-SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIW 480
S S + +LV + E + + G+ +W
Sbjct: 170 FGSYNNHAWSFPSEPVKLLVTGDIENTSLAPE-DPTFPADTWGTYLLTTETGLQKDHALW 228
Score = 37.6 bits (87), Expect = 0.013
Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 15/137 (10%)
Query: 89 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 148
R + + I + G+YS +S L + + V
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 114
Query: 149 VGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRV 208
G C+ D ++ F +G + + + E + V
Sbjct: 115 SGE----------KVTFYCRLDTATSM-FLLLKEGRS----SHVQRGYGKVQAEFPLGPV 159
Query: 209 RRDDGGRYSVTASNESG 225
G Y S +
Sbjct: 160 TTAHRGTYRCFGSYNNH 176
Score = 37.6 bits (87), Expect = 0.013
Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 15/137 (10%)
Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 255
R + + I + G+YS +S L + + V
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 114
Query: 256 VGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRV 315
G C+ D ++ F +G + + + E + V
Sbjct: 115 SGE----------KVTFYCRLDTATSM-FLLLKEGRS----SHVQRGYGKVQAEFPLGPV 159
Query: 316 RRDDGGRYSVTASNESG 332
G Y S +
Sbjct: 160 TTAHRGTYRCFGSYNNH 176
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 44.9 bits (106), Expect = 3e-05
Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 10/149 (6%)
Query: 374 RSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC 433
+ E + + + E N + S++ +GR+ C + G S
Sbjct: 27 QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEP 86
Query: 434 SCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP---------TPQLIWYKDN 484
S L ++V Y P + ++T V+L+C +L W D+
Sbjct: 87 SDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDS 146
Query: 485 KKIKAGDIFA-LTANPKDPSSLGTYTCEA 512
+ +G A P PS C
Sbjct: 147 QLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Score = 36.4 bits (84), Expect = 0.026
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
I ++ ++C + G S S L+L V Y KP V++ G V L
Sbjct: 60 FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTL 119
Query: 867 ECKVIGVPQPTLKWFKDGR 885
+C + ++G
Sbjct: 120 QCGS-RLRFDRFILTEEGD 137
Score = 35.6 bits (82), Expect = 0.046
Identities = 14/129 (10%), Positives = 30/129 (23%), Gaps = 15/129 (11%)
Query: 92 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPDAPAFIRRLHDIAVKV 149
+ +I + GRY + +G+S E S +E V +
Sbjct: 56 NKARFSIPSMTEHHAGRYRCYYYSPAGWS----EPSDPLELVVTGFYN--------KPTL 103
Query: 150 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG-NRFRAINRDGRTELNIRRV 208
+V ++C L + + + + + V
Sbjct: 104 SALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPV 163
Query: 209 RRDDGGRYS 217
Sbjct: 164 TPSHRWMLR 172
Score = 35.6 bits (82), Expect = 0.046
Identities = 14/129 (10%), Positives = 30/129 (23%), Gaps = 15/129 (11%)
Query: 199 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPDAPAFIRRLHDIAVKV 256
+ +I + GRY + +G+S E S +E V +
Sbjct: 56 NKARFSIPSMTEHHAGRYRCYYYSPAGWS----EPSDPLELVVTGFYN--------KPTL 103
Query: 257 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG-NRFRAINRDGRTELNIRRV 315
+V ++C L + + + + + V
Sbjct: 104 SALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPV 163
Query: 316 RRDDGGRYS 324
Sbjct: 164 TPSHRWMLR 172
Score = 29.1 bits (65), Expect = 6.9
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 3/119 (2%)
Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGT 365
+ +I + GRY + +G+S L + + L V G
Sbjct: 56 NKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGE 115
Query: 366 RARLLVEIRSPTEIKIHWYRN-DRKLEENKIYRTQHDGNFYFI-DLSSVSLFDSGRWTC 422
L R + + D KL + G F + + V+ C
Sbjct: 116 NVTLQCGSRLRFD-RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC 173
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 44.8 bits (106), Expect = 3e-05
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 382 HWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
+ +++ + ++ +GR+ C +N S S +L ++
Sbjct: 39 RLEKLSSSRYQDQ-------AVLFI---PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVA 88
Query: 442 PKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK-----AGDIFALT 496
+ P + + ++ G V+L+C+ Q YK+ +
Sbjct: 89 TGVFAKPSLSAQPGPAVSSGGDVTLQCQ-TRYGFDQFALYKEGDPAPYKNPERWYRASFP 147
Query: 497 ANPKDPSSLGTYTC 510
+ GTY C
Sbjct: 148 IITVTAAHSGTYRC 161
Score = 38.6 bits (90), Expect = 0.004
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 5/114 (4%)
Query: 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 368
L I ++R GRY + N S +S +L + + A + AV G
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVT 112
Query: 369 LLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
L + R + + Y+ K + +F + +V+ SG + C
Sbjct: 113 LQCQTRYGFD-QFALYKEGDPA-PYKNPERWYRASFP---IITVTAAHSGTYRC 161
Score = 37.5 bits (87), Expect = 0.010
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVN 865
L I A++ + ++C N S+ S L+L + KP + +S GG V
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVT 112
Query: 866 LECKVIGVPQPTLKWFKDGR 885
L+C+ +K+G
Sbjct: 113 LQCQ-TRYGFDQFALYKEGD 131
Score = 35.2 bits (81), Expect = 0.059
Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 15/123 (12%)
Query: 95 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 154
L I ++R GRY + N S +S +L + + A + AV G
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVT 112
Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 214
L +CQ F+ +GD ++ R R I V G
Sbjct: 113 L----------QCQTRYGFDQ-FALYKEGDP----APYKNPERWYRASFPIITVTAAHSG 157
Query: 215 RYS 217
Y
Sbjct: 158 TYR 160
Score = 35.2 bits (81), Expect = 0.059
Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 15/123 (12%)
Query: 202 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 261
L I ++R GRY + N S +S +L + + A + AV G
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVT 112
Query: 262 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 321
L +CQ F+ +GD ++ R R I V G
Sbjct: 113 L----------QCQTRYGFDQ-FALYKEGDP----APYKNPERWYRASFPIITVTAAHSG 157
Query: 322 RYS 324
Y
Sbjct: 158 TYR 160
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 44.7 bits (105), Expect = 5e-05
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 20/151 (13%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
+ G S L C P P E S + + GL + ++ +
Sbjct: 10 RVAFVERGGSLWLNCSTNCPR-PERGGL-------ETSLRRNGTQRGLRWLARQLVDIRE 61
Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE--SLKAVMTDDGLVSFECKVV 675
+ + C + Q A + +++P VE L + C+V
Sbjct: 62 -PETQPVCFFRCARRTLQ---ARGLIRT---FQRPDRVELMPLPPWQPVGENFTLSCRVP 114
Query: 676 G---FPTPTLQWFKDNEELKPGDVYQLTGTS 703
G + TL + +EL +
Sbjct: 115 GAGPRASLTLTLLRGAQELIRRSFAGEPPRA 145
Score = 40.1 bits (93), Expect = 0.001
Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 21/119 (17%)
Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKF--LEELKAVLSEGGAVNLECKVIG 872
+ + C + +++P L L G L C+V G
Sbjct: 61 EPETQPVCFFRCARRTLQAR--GLIRT---FQRPDRVELMPLPPWQPVGENFTLSCRVPG 115
Query: 873 VPQP---TLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMG 917
TL + +EL G ++C A +
Sbjct: 116 AGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
Score = 39.7 bits (92), Expect = 0.002
Identities = 12/123 (9%), Positives = 25/123 (20%), Gaps = 18/123 (14%)
Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLEC 468
L + + C A + L +L C
Sbjct: 56 LVDIRE-PETQPVCFFRCARRTLQARGLIRTFQRPD---RVELMPLPPWQPVGENFTLSC 111
Query: 469 KVMGI-PTPQLI--WYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVN 514
+V G P L + +++ + ++C A
Sbjct: 112 RVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
Query: 515 CMG 517
+
Sbjct: 172 DLR 174
Score = 33.1 bits (75), Expect = 0.27
Identities = 18/174 (10%), Positives = 36/174 (20%), Gaps = 15/174 (8%)
Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
VE + C + + +R +
Sbjct: 11 VAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG------LRWLARQLVDIREPET 64
Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PT 377
+ A+ + Q PD VG L +
Sbjct: 65 -QPVCFFRCARRTLQARGLIRT-FQRPDRVEL--MPLPPWQPVGENFTLSCRVPGAGPRA 120
Query: 378 EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS-VSLFDSGR-WTCLAENAVG 429
+ + R ++L + + D G ++C AE +
Sbjct: 121 SLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
Score = 32.0 bits (72), Expect = 0.65
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 855 KAVLSEGGAVNLECKVIGVPQP---TLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCE 911
A + GG++ L C P+P L+ + G D C
Sbjct: 11 VAFVERGGSLWLNCST-NCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCF 69
Query: 912 AHNCMGTTSSSAALL 926
C T + L+
Sbjct: 70 F-RCARRTLQARGLI 83
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 44.5 bits (104), Expect = 5e-05
Identities = 21/144 (14%), Positives = 36/144 (25%), Gaps = 18/144 (12%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
V +G S L C++ S+ W + + A G + +
Sbjct: 15 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ------SDTGRSVLTVRNASL 68
Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGF 677
G CV + Q + V Y P + A + G C
Sbjct: 69 SAAGTRVCVGSCGGRTFQ-HTVQLLV-----YAFPNQLTVSPAALV-PGDPEVACTAHKV 121
Query: 678 P-----TPTLQWFKDNEELKPGDV 696
+ +EL+
Sbjct: 122 TPVDPNALSFSLLVGGQELEGAQA 145
Score = 37.2 bits (85), Expect = 0.015
Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 34/196 (17%)
Query: 668 VSFECKVVGF-PTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVM 716
C++ ++QW + L G V TG S L G+ CV
Sbjct: 25 RQLTCRLACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGG 82
Query: 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
+ + QL + N L+ L+ + + +C A V
Sbjct: 83 RTFQHTVQLLVYAFPNQLTVSPAALVPGDPE--------VACTAH-------KVTPVDPN 127
Query: 777 EPKVSWFRDDQQV--VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN-DFGQSIT 833
S Q++ ++ ++ +E + V W+ ++
Sbjct: 128 ALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT--ERWRLPPLGTPVPPALY 185
Query: 834 SCFLKLNVPKHYKKPK 849
C + +P +
Sbjct: 186 -CQATMRLPGLELSHR 200
Score = 36.4 bits (83), Expect = 0.031
Identities = 20/154 (12%), Positives = 41/154 (26%), Gaps = 17/154 (11%)
Query: 359 IAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
+AV +G +L + + W D L Q D + + + SL +
Sbjct: 17 VAVALGASRQLTCRLACADRGASVQWRGLDTSLG-----AVQSDTGRSVLTVRNASLSAA 71
Query: 418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP--- 474
G C+ + +L V Y P + G + C +
Sbjct: 72 GTRVCVGSCGGRTFQHTVQLLV-----YAFPNQL-TVSPAALVPGDPEVACTAHKVTPVD 125
Query: 475 --TPQLIWYKDNKKIKAGDIFALTANPKDPSSLG 506
++++ ++ G
Sbjct: 126 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQG 159
Score = 33.7 bits (76), Expect = 0.21
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 852 EELKAVLSEGGAVNLECKVIGV-PQPTLKWFKDGRELKAGDIH--------KIISGEDGT 902
E ++ G + L C++ +++W L A + S
Sbjct: 13 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAA- 71
Query: 903 CCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE 935
G C T + LL + +Q+
Sbjct: 72 ---GTRVCVGSCGGRTFQHTVQLLVYAFPNQLT 101
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 43.2 bits (101), Expect = 6e-05
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 11/121 (9%)
Query: 534 LDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--- 590
L DD + G + +L+CQV W N
Sbjct: 22 LGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQ-WSNPAQQTL 80
Query: 591 -----VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM 645
++ ++ SI I+ + D+GE+ C + + V VL
Sbjct: 81 YFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAK--SLVTVLG 138
Query: 646 P 646
Sbjct: 139 I 139
Score = 40.2 bits (93), Expect = 7e-04
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 10/132 (7%)
Query: 320 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 379
++ + T + ++ D V G L +++ +
Sbjct: 9 AAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS 68
Query: 380 KIHWYRNDRKL---------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR 430
+ W ++ +N+I + I +S+V+L D G +TC R
Sbjct: 69 SLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVR 128
Query: 431 SHCSCELSVLVP 442
+ ++VL
Sbjct: 129 TA-KSLVTVLGI 139
Score = 34.0 bits (77), Expect = 0.11
Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 8/134 (5%)
Query: 718 KAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPE 777
A + ++ ++DK + N QV +
Sbjct: 8 AAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHED 67
Query: 778 PKVSWFRDDQQVVESDN--------VKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
+ W QQ + ++++ T + I + +AD+ E+ C
Sbjct: 68 SSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPV 127
Query: 830 QSITSCFLKLNVPK 843
++ S L +P+
Sbjct: 128 RTAKSLVTVLGIPQ 141
Score = 30.1 bits (67), Expect = 2.1
Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 5/139 (3%)
Query: 106 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 165
++ + T + ++ D V G L +++ +
Sbjct: 9 AAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS 68
Query: 166 KCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNES 224
Q+ + + NR + + ++I V D G Y+ +
Sbjct: 69 SLQWSNPAQ--QTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMP 126
Query: 225 GYSTAKFELSVESQVPDAP 243
+ K ++V +P P
Sbjct: 127 VRTA-KSLVTV-LGIPQKP 143
Score = 30.1 bits (67), Expect = 2.1
Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 5/139 (3%)
Query: 213 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 272
++ + T + ++ D V G L +++ +
Sbjct: 9 AAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS 68
Query: 273 KCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNES 331
Q+ + + NR + + ++I V D G Y+ +
Sbjct: 69 SLQWSNPAQ--QTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMP 126
Query: 332 GYSTAKFELSVESQVPDAP 350
+ K ++V +P P
Sbjct: 127 VRTA-KSLVTV-LGIPQKP 143
Score = 29.0 bits (64), Expect = 4.1
Identities = 8/58 (13%), Positives = 18/58 (31%)
Query: 842 PKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE 899
+ + GG V L+C+V +L+W ++ + +
Sbjct: 34 INLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDN 91
Score = 28.6 bits (63), Expect = 5.4
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 76 GDHPIFGN-RFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
G+ + R + + ++I V D G Y+ + + K ++V +P
Sbjct: 83 GEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTA-KSLVTV-LGIP 140
Query: 134 DAP 136
P
Sbjct: 141 QKP 143
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 45.8 bits (108), Expect = 7e-05
Identities = 32/248 (12%), Positives = 66/248 (26%), Gaps = 54/248 (21%)
Query: 358 DIAVKVGTRARL-------LVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFIDL 409
V++ + ++ I W N + + + + F D+
Sbjct: 12 SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDI 71
Query: 410 SSVSLFDSGRWTC--LAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
+S + + TC L + ++ + +P P K L I+ E + E
Sbjct: 72 AS----LNIQLTCNILTFGQLEQNVYGITIISGLP-----PEKPKNLSCIVNEGKKMRCE 122
Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVNCM 516
G T + + A P+S EA N +
Sbjct: 123 WDG-GRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENAL 181
Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG-PAPIFIKEVENVKAKI---------GT 566
G S + + P P + + E + + + +
Sbjct: 182 GKVTSDHINFDPVYK-------------VKPNPPHNLSVINSEELSSILKLTWTNPSIKS 228
Query: 567 SAILECQV 574
IL+ +
Sbjct: 229 VIILKYNI 236
Score = 37.3 bits (86), Expect = 0.029
Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 34/189 (17%)
Query: 558 ENVKAKIGTSAILECQVLVPPWP------RSIYWYNKEGVVEASDKYHIMADGLGGYSIE 611
E+ ++ ++ C + I W + I S+
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII---NRTASSVT 67
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESLKAVMTDDGLVSF 670
+ + + + C + ++Q + +P P ++L ++ +
Sbjct: 68 FTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLP-----PEKPKNLSCIVNEGK--KM 119
Query: 671 ECK-VVGFPTP-----TLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKN 714
C+ G T TL+ + + T TS A+N
Sbjct: 120 RCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN 179
Query: 715 VMGKAESST 723
+GK S
Sbjct: 180 ALGKVTSDH 188
Score = 36.1 bits (83), Expect = 0.065
Identities = 8/80 (10%), Positives = 16/80 (20%), Gaps = 13/80 (16%)
Query: 857 VLSEGGAVNLECKV-------IGVPQPTLKWFKDGRELKAGDIHKI------ISGEDGTC 903
V+ C + V + W + + I ++ D
Sbjct: 14 VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIAS 73
Query: 904 CLGIYTCEAHNCMGTTSSSA 923
TC +
Sbjct: 74 LNIQLTCNILTFGQLEQNVY 93
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 42.6 bits (100), Expect = 7e-05
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 13/112 (11%)
Query: 554 IKEVENVKAKIGTSAILECQVLVPP-------W---PRSIYWYNKEGVVEASDKYHIMAD 603
I+ N+ A+ G S IL+C + W + + N + S +
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 604 GLGGYSIEINYLEAVDDGEWKC-VATSSSGVKQFSAAYVHVL-MPKNYRKPR 653
G + + L D GE+ C T G ++ VL R
Sbjct: 67 PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYT-GRIFLEVLESSVAEHGAR 117
Score = 30.7 bits (69), Expect = 0.90
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 137 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQ---FDLNNTIPFSFRAQGDH--PIFGNR 191
I +I+ + G L + S T Q + + G H P F +R
Sbjct: 5 GTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVT-ASNESGYSTAKFELSV 235
+ L ++ + +D G Y + G T + L V
Sbjct: 65 ---VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Score = 30.7 bits (69), Expect = 0.90
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 244 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQ---FDLNNTIPFSFRAQGDH--PIFGNR 298
I +I+ + G L + S T Q + + G H P F +R
Sbjct: 5 GTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVT-ASNESGYSTAKFELSV 342
+ L ++ + +D G Y + G T + L V
Sbjct: 65 ---VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Score = 28.7 bits (64), Expect = 4.0
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 351 AFIRRLHDIAVKVGTRARLLVEIRSPTE--IKIHWYRNDRKLEENKIYRTQHDGNFYF-- 406
I +I+ + G L + S T +++W + D+ L H +
Sbjct: 5 GTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 407 --------IDLSSVSLFDSGRWTCL-AENAVGRSHCSCELSVLVP 442
+ L S+++ D+G + C+ G L VL
Sbjct: 65 VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109
Score = 28.0 bits (62), Expect = 8.3
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 71 FNRAQGDH--PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVT-ASNESGYSTAKFELS 127
N G H P F +R + L ++ + +D G Y + G T + L
Sbjct: 49 CNADLGWHISPSFKDR---VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLE 105
Query: 128 V 128
V
Sbjct: 106 V 106
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 41.3 bits (96), Expect = 2e-04
Identities = 20/106 (18%), Positives = 29/106 (27%), Gaps = 26/106 (24%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFP---TPTLQWFKDN---EELKPGDVYQL----- 699
F++ +V + G KV G PT++WFK K G +
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 700 ----TGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIR 731
T L G Y K + +E R
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 40.9 bits (95), Expect = 3e-04
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQV---SISPEPKVSWFRDDQQVVESDNVK--IL 798
F++ S ++ +V + +P + WF+ + S +
Sbjct: 8 AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67
Query: 799 KET------LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
KE+ + L I + + D+ ++ SC ++V
Sbjct: 68 KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCD--SCGFNIDV 114
Score = 38.6 bits (89), Expect = 0.001
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 76 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
G F + + EL+I +V D G Y + + + F + VE
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 38.6 bits (89), Expect = 0.001
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
G F + + EL+I +V D G Y + + + F + VE
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 38.6 bits (89), Expect = 0.001
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 290 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
G F + + EL+I +V D G Y + + + F + VE
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 38.2 bits (88), Expect = 0.002
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKIHWYR-----NDRKLEENKIYRTQHD 401
F+++ ++V+ G A ++ ++ P + I W++ K ++ H+
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 402 GN----FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
+ + V L D G + + C + V P+
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 37.1 bits (85), Expect = 0.006
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 22/102 (21%)
Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVP---QPTLKWFKDGR---ELKAGDIHKIISG 898
FL++ +V + G + KV G +PT+KWFK K+G
Sbjct: 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 899 EDGTCCL---------------GIYTCEAHNCMGTTSSSAAL 925
+ + G Y E S +
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNI 112
Score = 35.9 bits (82), Expect = 0.011
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR--SIYWY--------NKEGVV 592
S P +F+K+ ++V + G A++ +V P +I W+ +K G
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 593 EASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
+ + H A + + I + D G ++ + + V P+
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDS-CGFNIDVEAPR 118
Score = 33.2 bits (75), Expect = 0.12
Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 22/91 (24%)
Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIP---TPQLIWYKDNKK---IKAGD------- 491
F K+ +++ E G + KV G P + W+K K+G
Sbjct: 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 492 --------IFALTANPKDPSSLGTYTCEAVN 514
L G Y E
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKA 101
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 41.7 bits (97), Expect = 4e-04
Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 21/151 (13%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
+ + + S + C P E S ++ + ++ +
Sbjct: 10 KKLAVEPKGSLEVNCSTTCNQ-PEVGGL-------ETSLNKILLDEQAQWKHYLVSNIS- 60
Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE--SLKAVMTDDGLVSFECKVV 675
D +C T S G ++ + V V Y+ PR V ++ + EC+V
Sbjct: 61 -HDTVLQCHFTCS-GKQESMNSNVSV-----YQPPRQVILTLQPTLVAVGKSFTIECRVP 113
Query: 676 G---FPTPTLQWFKDNEELKPGDVYQLTGTS 703
+ TL F+ NE L +
Sbjct: 114 TVEPLDSLTLFLFRGNETLHYETFGKAAPAP 144
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 39.5 bits (92), Expect = 6e-04
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 557 VENVKAKIGTSAILECQVLVP--PWPRSIYWY-----------------NKEGVVEASDK 597
++ K ++G +A L C +P + W + + S +
Sbjct: 1 MDGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSR 60
Query: 598 YHIMAD-GLGGYSIEINYLEAVDDGEWKC 625
Y + D G S+ I + D G + C
Sbjct: 61 YQLKGDLNKGDVSLIIKNVTLDDHGTYCC 89
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 42.6 bits (100), Expect = 6e-04
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEAS--------DKYHIMAD 603
+N+ A+IG +L+C+ P+ + W G EA + +A
Sbjct: 368 AAAASAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVAR 427
Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
L S+ + + D+G ++C A + +G + S V V KP V+S +
Sbjct: 428 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG--KPEIVDSASELTA 485
Query: 664 DDGLVSFECKVV---GFPTPTLQWFKDNEELKPGD 695
G+ + V +P TL W D + L P +
Sbjct: 486 --GVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNE 518
Score = 31.1 bits (70), Expect = 2.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVN 865
L + A+ + D+ ++C A N G+ S + ++ V + KP+ ++ + G N
Sbjct: 433 SLFLPAVGIQDEGIFRCQAMNRNGKETKSNY-RVRVYQIPGKPEIVDSASEL--TAGVPN 489
Query: 866 LECKVI---GVPQPTLKWFKDGREL 887
+ P TL W DG+ L
Sbjct: 490 KVGTCVSEGSYPAGTLSWHLDGKPL 514
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 41.0 bits (96), Expect = 7e-04
Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 5/154 (3%)
Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS---VTAS 328
++C D+ R + + + +I R+ +D G Y
Sbjct: 27 LQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTH 86
Query: 329 NESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR 388
+ S L + + V G L RS ++ H R +
Sbjct: 87 SPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYDM-YHLSR-EG 144
Query: 389 KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
+ E ++ + D G + C
Sbjct: 145 EAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Score = 39.9 bits (93), Expect = 0.002
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 23/146 (15%)
Query: 382 HWYRNDRKLEENKIYRTQHDG----NFYFIDLSSVSLFDSGRWTCLA---ENAVGRSHCS 434
+R + ++ HDG NF +S ++ +G + C + S S
Sbjct: 39 LLHREGMFNDTLRLIGEHHDGVSKANFS---ISRMTQDLAGTYRCYGSVTHSPYQVSAPS 95
Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNK--------- 485
L +++ Y+ P + + + V+L C ++ +
Sbjct: 96 DPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSS-RSSYDMYHLSREGEAHERRLPAG 154
Query: 486 KIKAGDIFAL-TANPKDPSSLGTYTC 510
G A P GTY C
Sbjct: 155 PKVNGTFQADFPLGPATHG--GTYRC 178
Score = 35.3 bits (81), Expect = 0.069
Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 19/183 (10%)
Query: 165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS---VTAS 221
++C D+ R + + + +I R+ +D G Y
Sbjct: 27 LQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTH 86
Query: 222 NESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNT 281
+ S L + + V G V + C +
Sbjct: 87 SPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGEN----VTLS------CSSRSSYD 136
Query: 282 IPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS 341
+ R H +N + + + GG Y S + + +E S
Sbjct: 137 MYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA--THGGTYRCFGS----FHDSPYEWS 190
Query: 342 VES 344
S
Sbjct: 191 KSS 193
Score = 33.0 bits (75), Expect = 0.35
Identities = 23/194 (11%), Positives = 48/194 (24%), Gaps = 25/194 (12%)
Query: 53 SRVIARGQ------QSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 106
++ + S + + +R + + + +I R+ +D
Sbjct: 16 GPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLA 75
Query: 107 GRYS---VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT 163
G Y + S L + + V G V +
Sbjct: 76 GTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGEN----VTLS--- 128
Query: 164 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 223
C + + R H +N + + + GG Y S
Sbjct: 129 ---CSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA--THGGTYRCFGS-- 181
Query: 224 SGYSTAKFELSVES 237
+ + +E S S
Sbjct: 182 --FHDSPYEWSKSS 193
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 41.9 bits (98), Expect = 0.001
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 16/161 (9%)
Query: 361 VKVGTRARL---LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
+ +G+ A L L +R + + W + K G + +SSV +
Sbjct: 259 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCY---SVSSVLPGCA 315
Query: 418 GRW------TCLAEN-AVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV 470
W TC A + + E + + V+L C
Sbjct: 316 EPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNE-LVTLTCLA 374
Query: 471 MGI-PTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYT 509
G P L+ W + ++++ + + T+
Sbjct: 375 RGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFA 415
Score = 31.5 bits (71), Expect = 1.9
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 35/146 (23%)
Query: 668 VSFECKVVGFPTP---TLQWFKDNEE--LKPGDVYQLTGTSSLGS--------------Y 708
+ C + G T W + + ++ L G S+ S +
Sbjct: 265 ANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTF 324
Query: 709 CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKF 768
C A ES T LT ++ + ++ LL P E +NE
Sbjct: 325 TCTAAY----PESKTPLTATLSKSGNTFRPEVHLL----PPPSEE------LALNELVTL 370
Query: 769 TVQVS-ISPEP-KVSWFRDDQQVVES 792
T SP+ V W + Q++
Sbjct: 371 TCLARGFSPKDVLVRWLQGSQELPRE 396
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 39.6 bits (92), Expect = 0.001
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 339 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT 398
LS E + P P +I K R + E S K+ + N++++ E Y+
Sbjct: 29 ALSQEHKFPTVPTKSELAVEILEKGQVRFWMQAEKLSS-NAKVSYIFNEKEIFEGPKYKM 87
Query: 399 QHDGNFYFIDLSSVSLF--DSGRWTCLAENAVGRSHCSCELSVLVPKAYKA 447
D N I++ L D G +T ++ H + VL+ YK
Sbjct: 88 HIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHSTL---VLIGDVYKK 135
Score = 34.6 bits (79), Expect = 0.048
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 849 KFLEELKAVLSEGGAVNLECKVIGV-PQPTLKWFKDGRELKAGDIHKI------------ 895
EL + E G V + + + + + +E+ G +K+
Sbjct: 40 PTKSELAVEILEKGQVRFWMQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMF 99
Query: 896 ---ISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAE 938
+ ED G YT + + T S+ L+G K ++AE
Sbjct: 100 MEKLQDEDE----GTYTFQIQDGKATGHSTLVLIGDVYKKLQKEAE 141
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 37.8 bits (87), Expect = 0.002
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 11/90 (12%)
Query: 846 KKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
+ + V G V L C P + W + + + + K I ++ L
Sbjct: 6 EMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL 63
Query: 906 ---------GIYTCEAHNCMGTTSSSAALL 926
G Y C ++ L
Sbjct: 64 KEFSELEQSGYYVCYPRGSKPEDANFYLYL 93
Score = 34.0 bits (77), Expect = 0.044
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
+I W ND+ + ++ + + L SG + C +
Sbjct: 35 EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 86
Score = 31.7 bits (71), Expect = 0.35
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL---------GTYTCEAV 513
TV L C P +++W ++K I + + +D SL G Y C
Sbjct: 23 TVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 80
Query: 514 N 514
Sbjct: 81 G 81
Score = 31.3 bits (70), Expect = 0.43
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 15/69 (21%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVY-------------QLTGTSSLGSYCCVAKN 714
V C P + W +++ + + + + G Y C +
Sbjct: 24 VILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG 81
Query: 715 VMGKAESST 723
+ +
Sbjct: 82 SKPEDANFY 90
Score = 30.1 bits (67), Expect = 1.2
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 771 QVSIS-----------PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL-EVADQA 818
+VSIS P ++ W +D+ + ++ K + HL + E+
Sbjct: 16 KVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSG 73
Query: 819 EWKCIATNDFGQSITS-CFLKLNV 841
+ C + +L+ V
Sbjct: 74 YYVCYPRGSKPEDANFYLYLRARV 97
Score = 27.8 bits (61), Expect = 6.1
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 4 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL---------GTYTCEAVN 44
P +++W ++K I + + +D SL G Y C
Sbjct: 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG 81
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.8 bits (85), Expect = 0.006
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 11/109 (10%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYN--KEGVVEASDKYHIMADG-- 604
+ ++ G++ L +P + + W+ + +VE + +
Sbjct: 3 SGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKF 62
Query: 605 -------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
++ I+ ++ D+ + +G +Q + VL P
Sbjct: 63 KGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDP 111
Score = 36.0 bits (83), Expect = 0.012
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 78 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVP 133
F R R + G L I +V+++D Y + ++G K +L V VP
Sbjct: 59 ESKFKGRVRLDPQSGA--LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP 113
Score = 36.0 bits (83), Expect = 0.012
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 185 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVP 240
F R R + G L I +V+++D Y + ++G K +L V VP
Sbjct: 59 ESKFKGRVRLDPQSGA--LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP 113
Score = 36.0 bits (83), Expect = 0.012
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVP 347
F R R + G L I +V+++D Y + ++G K +L V VP
Sbjct: 59 ESKFKGRVRLDPQSGA--LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP 113
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 37.8 bits (87), Expect = 0.009
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 26/143 (18%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYW---YNKEGVVEASDKYHIMADGLGGYSIEINY 614
V G S ++ C P+ + K+ ++ G E++
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQ-PKLLGIETPLPKKELLLP---------GNNRKVYELSN 56
Query: 615 LEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE--SLKAVMTDDGLVSFEC 672
++ +D + C + + + ++ V Y P VE L + ++ C
Sbjct: 57 VQ--EDSQPMCYSNCP-DGQSTAKTFLTV-----YWTPERVELAPLPSWQPVGKQLTLRC 108
Query: 673 KVVG-FPTP--TLQWFKDNEELK 692
+V G P T+ + +ELK
Sbjct: 109 QVEGGAPRAQLTVVLLRGEKELK 131
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 36.0 bits (83), Expect = 0.016
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 26/94 (27%)
Query: 558 ENVKAKIGTSAILECQVLVPPW---PRSIYWYNKEGVVEASDKYHIMADGLGGY------ 608
E ++ G +A L C+ + P P I W + D+ I+ G Y
Sbjct: 13 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPD 72
Query: 609 -----------------SIEINYLEAVDDGEWKC 625
SI + L+ D G ++C
Sbjct: 73 LKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQC 106
Score = 29.5 bits (66), Expect = 2.5
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 374 RSPTEIKIHWYRNDRKLEE-NKIY--RTQ------HDGNFYFIDLSSVSLFDSGRWTCLA 424
+ I Y D+ ++ R G+ I+++++ L D G + C
Sbjct: 50 NQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDAS-INVTNLQLSDIGTYQCKV 108
Query: 425 ENAVGRSHCSCELSVLV 441
+ A G ++ L VLV
Sbjct: 109 KKAPGVANKKIHLVVLV 125
Score = 29.5 bits (66), Expect = 2.7
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 96 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
+N+ ++ D G Y G + K L V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 29.5 bits (66), Expect = 2.7
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
+N+ ++ D G Y G + K L V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 29.5 bits (66), Expect = 2.7
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
+N+ ++ D G Y G + K L V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 37.2 bits (86), Expect = 0.020
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 16/135 (11%)
Query: 779 KVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATND-----FG 829
+ SWF DD +V + K++ V L I + + +KC +
Sbjct: 52 RFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIE 111
Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQP-TLKWFKDGREL 887
+SI+ P+ Y EE+ V++ C V G P +W +G+
Sbjct: 112 KSISKPEGTPRGPQVYTMAPPKEEMTQ-----SQVSITCMVKGFYPPDIYTEWKMNGQPQ 166
Query: 888 KAGDIHKIISGEDGT 902
+ DG+
Sbjct: 167 ENYKNTPPTMDTDGS 181
Score = 33.0 bits (75), Expect = 0.37
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 18/79 (22%)
Query: 454 LEAILTEQGTVSLECKVMGIPTP----QLIWYKDNKKIKA--------------GDIFAL 495
+ +L T + C V+ I + W+ D+ ++ + L
Sbjct: 25 TKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSEL 84
Query: 496 TANPKDPSSLGTYTCEAVN 514
+D + T+ C+ +
Sbjct: 85 PIVERDWLNGKTFKCKVNS 103
Score = 28.7 bits (64), Expect = 8.5
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 854 LKAVLSEGGAVNLECKVIGVPQP----TLKWFKDGRELKAGDIHKIISGEDGT 902
K VL G + C V+ + Q WF D E+ H + T
Sbjct: 25 TKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNST 77
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 36.3 bits (83), Expect = 0.041
Identities = 17/148 (11%), Positives = 44/148 (29%), Gaps = 18/148 (12%)
Query: 350 PAFIRRLHDIAVKVGTRARLL-------VEIRSPTEIKIHWYRNDRKLEENKIYRT-QHD 401
P V++ + + ++ I W N + + + +
Sbjct: 5 PCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA 64
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
+ F D++S+++ + L + ++ + +P P K L I+ E
Sbjct: 65 SSVTFTDIASLNIQLTC--NILTFGQLEQNVYGITIISGLP-----PEKPKNLSCIVNEG 117
Query: 462 GTVSLECKVM---GIPTPQLIWYKDNKK 486
+ E + T + +
Sbjct: 118 KKMRCEWDGGRETHLETNFTLKSEWATH 145
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.5 bits (79), Expect = 0.041
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 18/85 (21%)
Query: 559 NVKAKIGTSAILECQVLVPPWPRSIYWY-----------------NKEGVVEASDKYHIM 601
VK +G L C + W + S +Y++
Sbjct: 6 EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLK 65
Query: 602 ADGLGG-YSIEINYLEAVDDGEWKC 625
G S+ I D G + C
Sbjct: 66 GHISEGDVSLTIENSVESDSGLYCC 90
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 35.6 bits (82), Expect = 0.043
Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 3/113 (2%)
Query: 773 SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
+ + + + E + I + ++ CI S
Sbjct: 27 GNYGAVEYQLHFEGSL--FAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE 84
Query: 833 TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR 885
S L L V + Y P + G V C++ K+GR
Sbjct: 85 PSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMFLLLKEGR 136
Score = 35.2 bits (81), Expect = 0.064
Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 21/171 (12%)
Query: 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
+V I CQ + +R + R + + I + G+
Sbjct: 14 MVPKEKQVTICCQGNYGAVEYQLHF--EGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 71
Query: 216 YSVTASNESGYSTAKFELS--VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 273
YS +S E S ++ V + + V
Sbjct: 72 YSCIYRVGELWS----EPSNLLDLVVTEMYD--------TPTLSVHPGPEVISGEKVTFY 119
Query: 274 CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS 324
C+ D ++ F +G + + + E + V G Y
Sbjct: 120 CRLDTATSM-FLLLKEGRS----SHVQRGYGKVQAEFPLGPVTTAHRGTYR 165
Score = 34.4 bits (79), Expect = 0.093
Identities = 25/178 (14%), Positives = 45/178 (25%), Gaps = 14/178 (7%)
Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
+V I CQ + +R + R + + I + G+
Sbjct: 14 MVPKEKQVTICCQGNYGAVEYQLHF--EGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 71
Query: 323 YSVTASNESGYSTA--KFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 380
YS +S +L V + V G + + + T
Sbjct: 72 YSCIYRVGELWSEPSNLLDLVVTEMYD--TPTLSVHPGPEVISGEKVTFYCRLDTATS-M 128
Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS 438
+ R + Y + F L V+ G + C +H S
Sbjct: 129 FLLLKEGRSSHVQRGYG-KVQAEFP---LGPVTTAHRGTYRCFGSY---NNHAWSFPS 179
Score = 34.0 bits (78), Expect = 0.15
Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 19/127 (14%)
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPDAPAFIRRLHDIAVKVG 150
+ + I + G+YS +S E S ++ V + +
Sbjct: 56 KVKFYIPDMNSRMAGQYSCIYRVGELWS----EPSNLLDLVVTEMYD--------TPTLS 103
Query: 151 TRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR 210
V C+ D ++ F +G + + + E + V
Sbjct: 104 VHPGPEVISGEKVTFYCRLDTATSM-FLLLKEGRS----SHVQRGYGKVQAEFPLGPVTT 158
Query: 211 DDGGRYS 217
G Y
Sbjct: 159 AHRGTYR 165
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 35.6 bits (82), Expect = 0.050
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 20/151 (13%)
Query: 767 KFTVQVS-ISPEP---KVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQA 818
+ T V +S E K +W+ D +V + ++ V L + + +
Sbjct: 22 EVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK 81
Query: 819 EWKCIATND-----FGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIG- 872
E+KC +N ++I+ + P+ Y P +EL V+L C V G
Sbjct: 82 EYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTK-----NQVSLTCLVKGF 136
Query: 873 VPQP-TLKWFKDGRELKAGDIHKIISGEDGT 902
P ++W +G+ + DG+
Sbjct: 137 YPSDIAVEWESNGQPENNYKTTPPVLDSDGS 167
Score = 30.6 bits (69), Expect = 1.8
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 8/59 (13%)
Query: 848 PKFLEELKAVLSEGGAVNLECKVIGVPQP----TLKWFKDGRELKAGDIHKIISGEDGT 902
PK + L + C V+ V W+ DG E+ + T
Sbjct: 9 PKPKDTL----MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNST 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.053
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 16/44 (36%)
Query: 930 DKSQIEKAEEGKKALIVKD--PSLSTIQEEGTSEIYDTPMASIE 971
+K ++K + K L D P+L+ I+ A++E
Sbjct: 18 EKQALKKLQASLK-LYADDSAPALA-IK------------ATME 47
Score = 34.5 bits (78), Expect = 0.069
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 120 STAKFELSVESQVPD-APAFIRRLHDIAVK 148
+ K + S++ D APA +A+K
Sbjct: 21 ALKKLQASLKLYADDSAPA-------LAIK 43
Score = 34.5 bits (78), Expect = 0.069
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 227 STAKFELSVESQVPD-APAFIRRLHDIAVK 255
+ K + S++ D APA +A+K
Sbjct: 21 ALKKLQASLKLYADDSAPA-------LAIK 43
Score = 34.5 bits (78), Expect = 0.069
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 334 STAKFELSVESQVPD-APAFIRRLHDIAVK 362
+ K + S++ D APA +A+K
Sbjct: 21 ALKKLQASLKLYADDSAPA-------LAIK 43
Score = 33.4 bits (75), Expect = 0.17
Identities = 8/30 (26%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 996 EEEAIKVVE----MYADELSEHISDKNMIE 1021
E++A+K ++ +YAD+ + ++ K +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 35.8 bits (82), Expect = 0.055
Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 14/105 (13%)
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
L++ +++ + E++C ++ + L++ P L V +
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS-----PASRLLLDQVGMKENEDKY 138
Query: 867 ECKVIG-VPQP-TLKWFKDGRELKAGDIHK-------IISGEDGT 902
C+ G P+ + W K ++ I DGT
Sbjct: 139 MCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGT 183
Score = 35.0 bits (80), Expect = 0.10
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 29/158 (18%)
Query: 558 ENVKAKIGTSAILECQV----LVPPWPRSIYWY-------NKEGVVEASDKYHIMADG-- 604
+ + + C + + I W+ + V E +
Sbjct: 11 GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGA 70
Query: 605 --------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
G S+ + ++ + GE++C + Q + + P
Sbjct: 71 IVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQ------GTVQLEVVASPASRL 124
Query: 657 SLKAVMTDDGLVSFECKVVGF-PTP-TLQWFKDNEELK 692
L V + + C+ GF P + W K ++
Sbjct: 125 LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFP 162
Score = 33.1 bits (75), Expect = 0.35
Identities = 27/220 (12%), Positives = 55/220 (25%), Gaps = 62/220 (28%)
Query: 339 ELSVESQVPDAPAFIRRLHDIAVKVGTRARL-----LVEIRSPTEIKIHWYRNDR-KLEE 392
+L VE + + + + T + I W+ +E
Sbjct: 2 DLKVEMMAGGTQI---------TPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKE 52
Query: 393 NKIY------------------RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
K++ G+ + L + L ++G + C ++ +
Sbjct: 53 VKVFEFFGDHQEAFRPGAIVSPWRLKSGDAS-LRLPGIQLEEAGEYRCEVVVTPLKAQGT 111
Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PTP-QLIWYKDNKKIKAGDI 492
+L V+ P L+ + ++ C+ G P + W K +K
Sbjct: 112 VQLEVVAS-----PASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166
Query: 493 F---------------------ALTANPKDPSSLGTYTCE 511
L N Y C
Sbjct: 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCV 206
Score = 29.6 bits (66), Expect = 4.7
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGT 365
G L + ++ ++ G Y + +L V + P + + +
Sbjct: 80 GDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS-PASRLLLDQ----VGMKEN 134
Query: 366 RARLLVEIR--SPTEIKIHWYRNDRKLEEN 393
+ + E P I I W + +K
Sbjct: 135 EDKYMCESSGFYPEAINITWEKQTQKFPHP 164
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 34.8 bits (80), Expect = 0.072
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
G+ L CQ Y +E I + + I + G ++
Sbjct: 19 GSPVTLRCQG---GQETQEYRLYREKKTAPWIT-RIPQELVKKGQFPIPSITWEHTGRYR 74
Query: 625 CVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQW 684
C S + + S+ + +++ Y KP V+ G V+ +C
Sbjct: 75 CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCD-SQVAFDGFIL 133
Query: 685 FKDNEELKP 693
K+ E+ P
Sbjct: 134 CKEGEDEHP 142
Score = 34.0 bits (78), Expect = 0.15
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 780 VSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA-TNDFGQSITSCFLK 838
+R+ + +I +E + I ++ ++C ++ G+S +S L+
Sbjct: 35 YRLYREKKT--APWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLE 92
Query: 839 LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRE 886
L V Y KP + V++ GG V L+C V K+G +
Sbjct: 93 LVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDS-QVAFDGFILCKEGED 139
Score = 33.7 bits (77), Expect = 0.18
Identities = 17/157 (10%), Positives = 38/157 (24%), Gaps = 12/157 (7%)
Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
++CQ + + + + I + + GRY +++
Sbjct: 24 LRCQGGQETQE-YRLYREK-KTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81
Query: 332 GYSTAKFELS--VESQVPD--APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND 387
+ E S +E V + V G L + + + +
Sbjct: 82 AGRS---ESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFD-GFILCKEG 137
Query: 388 RKLEENKIYRTQHDGNFYFID--LSSVSLFDSGRWTC 422
+ H + VS + C
Sbjct: 138 EDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174
Score = 32.9 bits (75), Expect = 0.31
Identities = 18/165 (10%), Positives = 38/165 (23%), Gaps = 20/165 (12%)
Query: 165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 224
++CQ + + + + I + + GRY +++
Sbjct: 24 LRCQGGQETQE-YRLYREK-KTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81
Query: 225 GYSTAKFELS--VESQVPD--APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNN 280
+ E S +E V + V G ++C +
Sbjct: 82 AGRS---ESSDPLELVVTGAYIKPTLSAQPSPVVNSG----------GNVTLQCDSQVAF 128
Query: 281 TIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYS 324
+ D N R ++ V Y
Sbjct: 129 DGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYR 173
Score = 32.9 bits (75), Expect = 0.40
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPD--APAFIRRLHDIAVK 148
+ + I + + GRY +++ + E S +E V + V
Sbjct: 57 KGQFPIPSITWEHTGRYRCYYGSDTAGRS---ESSDPLELVVTGAYIKPTLSAQPSPVVN 113
Query: 149 VGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRR 207
G ++C + + D N R ++
Sbjct: 114 SG----------GNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGP 163
Query: 208 VRRDDGGRYS 217
V Y
Sbjct: 164 VSPSRRWWYR 173
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 35.9 bits (81), Expect = 0.085
Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 15/118 (12%)
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-------GIYTCEAHNCM 916
L+C + W LKA + G G+Y C + +
Sbjct: 551 AELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV 609
Query: 917 GTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEERE 974
+ + + ++ P+LS +Q EG+ +AS +
Sbjct: 610 KNKTVFQVVAKHVLEVKVVPKPVVA-------PTLSVVQTEGSRIATKVLVASTKHHH 660
Score = 33.2 bits (74), Expect = 0.48
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 20/123 (16%)
Query: 461 QGTVSLECKVMGIPTPQLIWYKDNKKIKA----------GDIFALTANPKDPSSLGTYTC 510
GT L+C ++ W N +KA ++ + D G Y C
Sbjct: 548 GGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGD---SGVYQC 603
Query: 511 EAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL 570
+ + +V+A+ L+ VP + P E + K+ ++
Sbjct: 604 LSEE-RVKNKTVFQVVAK---HVLEVKVVPKPVVAPTLSVV--QTEGSRIATKVLVASTK 657
Query: 571 ECQ 573
Sbjct: 658 HHH 660
Score = 30.1 bits (66), Expect = 5.2
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT-NDFGQSIT 833
S +V W + + L +G +L I L D ++C++ +++
Sbjct: 559 SNLARVFWKFQNGVLKAESPKYGL---MGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVF 615
Score = 29.3 bits (64), Expect = 8.7
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 365 TRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
A L +S ++ W + L+ E+ Y N +LS DSG + CL
Sbjct: 549 GTAELKCSQKSN-LARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEG---DSGVYQCL 604
Query: 424 AENAVGRSHCSCELS---VLVPKAYKAPFFTKELEAILTEQGTVSLEC 468
+E ++ ++ VL K P L + TE ++ +
Sbjct: 605 SEER-VKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKV 651
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.9 bits (75), Expect = 0.14
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGDHPIFGNRFRAINRD 198
+ DI G+ L + + N I + IF + F+
Sbjct: 10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKI-LEYNYNSTKTIFESEFK----- 63
Query: 199 GRTELN-------IRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
GR L I VR++D G Y + E+ + K L V
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYMRVLRETE-NELKITLEV 106
Score = 32.9 bits (75), Expect = 0.14
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 249 LHDIAVKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGDHPIFGNRFRAINRD 305
+ DI G+ L + + N I + IF + F+
Sbjct: 10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKI-LEYNYNSTKTIFESEFK----- 63
Query: 306 GRTELN-------IRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
GR L I VR++D G Y + E+ + K L V
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYMRVLRETE-NELKITLEV 106
Score = 29.0 bits (65), Expect = 2.9
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 75 QGDHPIFGNRFRAINRDGRTELN-------IRRVRRDDGGRYSVTASNESGYSTAKFELS 127
IF + F+ GR L I VR++D G Y + E+ + K L
Sbjct: 52 NSTKTIFESEFK-----GRVYLEENNGALHISNVRKEDKGTYYMRVLRETE-NELKITLE 105
Query: 128 V 128
V
Sbjct: 106 V 106
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 34.1 bits (78), Expect = 0.17
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 10/128 (7%)
Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLG-----VCHLKIHALEVADQAEWKCIA 824
+ + +W + + L L A + C A
Sbjct: 29 TGLRDASGVTFTWTPSSGKSAVQ---GPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA 85
Query: 825 TNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIG-VPQP-TLKWFK 882
++ + L + + L L+ V L C G P+ ++W +
Sbjct: 86 AYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQ 145
Query: 883 DGRELKAG 890
+EL
Sbjct: 146 GSQELPRE 153
Score = 29.8 bits (67), Expect = 4.2
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 15/70 (21%)
Query: 458 LTEQGTVSLECKVMGIPTPQLI---WYKDNKKI------------KAGDIFALTANPKDP 502
L +L C + G+ + W + K L +
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW 75
Query: 503 SSLGTYTCEA 512
+ T+TC A
Sbjct: 76 NHGKTFTCTA 85
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 33.8 bits (77), Expect = 0.25
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 4/110 (3%)
Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND---FGQSITSC 835
R+ + + + + + I + ++C + + S S
Sbjct: 36 HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSD 95
Query: 836 FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR 885
L + + Y+KP + + G +V L C ++G
Sbjct: 96 PLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCS-SRSSYDMYHLSREGE 144
Score = 32.6 bits (74), Expect = 0.57
Identities = 26/229 (11%), Positives = 56/229 (24%), Gaps = 27/229 (11%)
Query: 165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 224
++C D+ R + + +I + +D G Y S +
Sbjct: 26 LQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV-T 84
Query: 225 GYSTAKFELS--VESQVPDAPA--FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNN 280
S ++ + + V G V + C +
Sbjct: 85 HSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGES----VTLS------CSSRSSY 134
Query: 281 TIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 340
+ R H + +N + + + GG Y S + + +E
Sbjct: 135 DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA--THGGTYRCFGS----FRDSPYEW 188
Query: 341 S-----VESQVPDAPAFIRRLH-DIAVKVGTRARLLVEIRSPTEIKIHW 383
S + V P+ + + + G L +
Sbjct: 189 SNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDL 237
Score = 29.6 bits (66), Expect = 4.7
Identities = 28/243 (11%), Positives = 60/243 (24%), Gaps = 35/243 (14%)
Query: 53 SRVIARGQ------QSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 106
++ + S + +R + + +I + +D
Sbjct: 15 GPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLA 74
Query: 107 GRYSVTASNESGYSTAKFELS--VESQVPDAPA--FIRRLHDIAVKVGTRARLLVEIRSP 162
G Y S + S ++ + + V G V +
Sbjct: 75 GTYRCYGSV-THSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGES----VTLS-- 127
Query: 163 TEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASN 222
C + + R H + +N + + + GG Y S
Sbjct: 128 ----CSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA--THGGTYRCFGS- 180
Query: 223 ESGYSTAKFELS-----VESQVPDAPAFIRRLH-DIAVKVGTRARLLVEIRSPTEIKCQF 276
+ + +E S + V P+ + + + G L +
Sbjct: 181 ---FRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLI--SEE 235
Query: 277 DLN 279
DLN
Sbjct: 236 DLN 238
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 34.1 bits (78), Expect = 0.26
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 31/164 (18%)
Query: 375 SPTEIKIHWYRNDRKLEENKIY--RTQHDGNFY---FIDLSSVSLFDSGRWTCLAENA-- 427
+++I W+ N+ ++ + R ++ + + + C N
Sbjct: 270 DDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL 329
Query: 428 ---VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PTPQLI-WYK 482
+ R+ + SV P+ Y P +E+ + V+L C V P + W
Sbjct: 330 PAPIERTISKPKGSVRAPQVYVLPPPEEEM-----TKKQVTLTCMVTDFMPEDIYVEWTN 384
Query: 483 DNKKIKAGDIFA--------------LTANPKDPSSLGTYTCEA 512
+ K L K+ +Y+C
Sbjct: 385 NGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSV 428
Score = 31.4 bits (71), Expect = 1.6
Identities = 28/193 (14%), Positives = 52/193 (26%), Gaps = 42/193 (21%)
Query: 654 FVESLKAVMTDDGLVSFECKVVGF-PTP---TLQWFKDNEELKPGDVY----QLTGTSSL 705
F +K V+ C VV + WF +N E+ T +
Sbjct: 244 FPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRV 303
Query: 706 GS---------------YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
S C V K + ++ +L P
Sbjct: 304 VSALPIQHQDWMSGKEFKC----KVNNKDLPAPIERTISKPKGSVRAPQVYVL----PP- 354
Query: 751 FIEGLKSCQATVNEEFKFTVQVS-ISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLK 808
+ ++ T V+ PE V W + + + N + + ++ G +
Sbjct: 355 ------PEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFM- 407
Query: 809 IHALEVADQAEWK 821
L V ++ W
Sbjct: 408 YSKLRV-EKKNWV 419
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 33.3 bits (76), Expect = 0.27
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 18/77 (23%)
Query: 454 LEAILTEQGTVSLECKVMGI-PTPQLI---WYKDNKKIKAGDIFA--------------L 495
+ +LT T + C V+ I + W+ D+ ++ L
Sbjct: 11 PKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSEL 70
Query: 496 TANPKDPSSLGTYTCEA 512
+D + + C
Sbjct: 71 PIMHQDWLNGKEFKCRV 87
Score = 32.5 bits (74), Expect = 0.49
Identities = 21/164 (12%), Positives = 52/164 (31%), Gaps = 31/164 (18%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF-----DSGRWTCLAENA-- 427
E++ W+ +D ++ + + N F +S + + + + C +A
Sbjct: 33 DDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAF 92
Query: 428 ---VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PTP-QLIWYK 482
+ ++ + P+ Y P +++ + VSL C + P + W
Sbjct: 93 PAPIEKTISKTKGRPKAPQVYTLPPPKEQM-----AKDKVSLTCMITDFFPEDITVEWES 147
Query: 483 DNKKIKAGDIFA--------------LTANPKDPSSLGTYTCEA 512
+ + + L + + T+TC
Sbjct: 148 NGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSV 191
Score = 31.4 bits (71), Expect = 1.3
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 854 LKAVLSEGGAVNLECKVIGV----PQPTLKWFKDGRELKAGDIHKIISGEDGT 902
K VL+ + C V+ + P+ WF D E+ + T
Sbjct: 11 PKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNST 63
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 32.6 bits (74), Expect = 0.28
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 558 ENVKAKIGTSAILECQVLVPP--------WPRS-------IYWYNKEGVVEASDKY---- 598
++A +G A L C++ W RS +Y K+ E + +Y
Sbjct: 14 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRT 73
Query: 599 HIMADGL--GGYSIEINYLEAVDDGEWKCVATSSSGVKQ 635
++ + + G ++ I + D+G + C S ++
Sbjct: 74 ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEE 112
Score = 30.7 bits (69), Expect = 1.1
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 78 HPIFGNRFRAIN---RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
P + R + +G+ L I+ VR D G Y+ + S A EL VE
Sbjct: 66 APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
Score = 30.7 bits (69), Expect = 1.1
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 185 HPIFGNRFRAIN---RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
P + R + +G+ L I+ VR D G Y+ + S A EL VE
Sbjct: 66 APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
Score = 30.7 bits (69), Expect = 1.1
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 292 HPIFGNRFRAIN---RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
P + R + +G+ L I+ VR D G Y+ + S A EL VE
Sbjct: 66 APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
Score = 29.1 bits (65), Expect = 3.9
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 374 RSPTEIKIHWYRNDRKLEENKI----YRTQ------HDGNFYFIDLSSVSLFDSGRWTCL 423
RSP +H YRN + + + RT+ +G + + +V D G +TC
Sbjct: 45 RSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVA-LRIQNVRFSDEGGYTCF 103
Query: 424 AENAVGRSHCSCELSVLVP 442
+ + + EL V P
Sbjct: 104 FRDHSYQEEAAVELKVEDP 122
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 33.5 bits (75), Expect = 0.29
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGA 518
V L C + W D G LT K+ G YTC G
Sbjct: 19 APGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKG---GE 73
Query: 519 AFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
S S ++ ++ + + D+ + P + +
Sbjct: 74 VLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCE 110
Score = 31.2 bits (69), Expect = 1.8
Identities = 11/55 (20%), Positives = 14/55 (25%), Gaps = 2/55 (3%)
Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHN 914
G V L C + + W D G + G YTC
Sbjct: 20 PGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGG 72
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 32.1 bits (72), Expect = 0.31
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV----VEASDKYHIMADG 604
+ IK A G +EC V ++ W G +E + + +
Sbjct: 13 EVQLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEE 72
Query: 605 LGGYSIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHV 643
+ + + + + D+G + C +S V + +HV
Sbjct: 73 NRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 31.7 bits (72), Expect = 0.34
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 22/100 (22%)
Query: 558 ENVKAKIGTSAILECQVLVPP----------WPR-------SIYWYNKEGVVEASDKYHI 600
V +G S L C + VP W R +++ + S +
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 601 MAD----GLGGYSIEINYLEAVDDGEWKC-VATSSSGVKQ 635
+A L S+ + L D+G + C T G +
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS 107
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.7 bits (72), Expect = 0.35
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 17/84 (20%)
Query: 559 NVKAKIGTSAILECQVLVPPW----PRSIYWYNKEGVV------------EASDKYHIMA 602
++A +A L CQ ++W ++E +V KY
Sbjct: 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRT 62
Query: 603 DGLGG-YSIEINYLEAVDDGEWKC 625
+++ ++ L+ D G ++C
Sbjct: 63 SFDSDSWTLRLHNLQIKDKGLYQC 86
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 30.3 bits (68), Expect = 0.55
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCM 916
+ V + C ++ W + DI ++ G+ GIY C +
Sbjct: 5 IEELEDRVFVNCNT------SITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIY 58
Query: 917 GTTSSS 922
S+
Sbjct: 59 KDKEST 64
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 31.9 bits (72), Expect = 0.84
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCF-----LKLNVPKHYKKPKF--LEELKAV 857
LKI + D A + C ++ + L K+ P+ E +A
Sbjct: 76 FTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAE 135
Query: 858 LSEGGAVNLECKVIG-VPQP-TLKWFKDGRELKAG 890
+S L C G P L W+ +G+E+ +G
Sbjct: 136 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 170
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.8 bits (72), Expect = 0.97
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 854 LKAVLSEGGAVNLECKVIGVPQP----TLKWFKDGRELKAGDIHKIISGEDGT 902
+K VL + C V+ V + + WF + E+ + T
Sbjct: 19 IKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNST 71
Score = 29.5 bits (66), Expect = 4.3
Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 33/166 (19%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF-----DSGRWTCLAEN--- 426
+++I W+ N+ ++ + + D N +S++ + + C N
Sbjct: 41 DDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDL 100
Query: 427 --AVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLI---WY 481
+ R+ + V P+ Y P ++L + VSL C V+G P I W
Sbjct: 101 PSPIERTISKIKGLVRAPQVYILPPPAEQL-----SRKDVSLTCLVVG-FNPGDISVEWT 154
Query: 482 KDNKKIKAGDIFA--------------LTANPKDPSSLGTYTCEAV 513
+ + A L +++C
Sbjct: 155 SNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVR 200
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 30.3 bits (68), Expect = 1.1
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVV-------EASDKYHIMADGL----- 605
V +G S + P + I W +K V E + +
Sbjct: 7 FTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIH 66
Query: 606 ---GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAY-VHV 643
Y++ I+ L D G++K + + + Y + +
Sbjct: 67 ALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 29.5 bits (66), Expect = 1.7
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 78 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS--VTASNESGYSTAKFELSV 128
H + R A+ + L I +R +D G Y + + +T ++ L +
Sbjct: 58 HRNYYERIHALGPNYN--LVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 29.5 bits (66), Expect = 1.7
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 185 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS--VTASNESGYSTAKFELSV 235
H + R A+ + L I +R +D G Y + + +T ++ L +
Sbjct: 58 HRNYYERIHALGPNYN--LVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 29.5 bits (66), Expect = 1.7
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS--VTASNESGYSTAKFELSV 342
H + R A+ + L I +R +D G Y + + +T ++ L +
Sbjct: 58 HRNYYERIHALGPNYN--LVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 31.9 bits (71), Expect = 1.5
Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN 403
+ P+ L +++ +R L + S W + + + +
Sbjct: 495 KECPNPKPDKAPLQKVSLAPNSRYYLSCPMESR-HATYSWRHKENVEQSCEPGHQSPNCI 553
Query: 404 FYFIDLSSVSLFDSGRWTCLA-ENAVGRSHCSCELSV 439
+ +++ G + C A E + R +L
Sbjct: 554 LFIE---NLTAQQYGHYFCEAQEGSYFREAQHWQLLP 587
Score = 30.0 bits (66), Expect = 4.8
Identities = 11/99 (11%), Positives = 19/99 (19%), Gaps = 7/99 (7%)
Query: 421 TCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIW 480
+ + P + L L C + W
Sbjct: 475 ISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSW 533
Query: 481 YKDNKKIKAGDIFALTAN------PKDPSSLGTYTCEAV 513
++ + + N G Y CEA
Sbjct: 534 RHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQ 572
Score = 30.0 bits (66), Expect = 4.9
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 15/61 (24%)
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI----------ISGEDGTCCLGIYTCE 911
L C + T W ++ + ++ + G Y CE
Sbjct: 516 SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQY----GHYFCE 570
Query: 912 A 912
A
Sbjct: 571 A 571
>2h4o_A YONK protein; PSI, protein structure initiative, northeast structural
GENO consortium, NESG, structural genomi unknown
function; 2.80A {Bacillus subtilis} SCOP: d.368.1.1
Length = 76
Score = 29.0 bits (64), Expect = 1.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 973 REISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEH 1013
+EI F+GK VS+++ E +L +K VEM D L H
Sbjct: 36 KEILSEFNGKNVSITVKEENEL----PVKGVEMAGDPLEHH 72
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 31.4 bits (71), Expect = 1.8
Identities = 26/165 (15%), Positives = 50/165 (30%), Gaps = 33/165 (20%)
Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRW------TCLAENA- 427
E+K +WY + ++ K + N + +S +++ W C N
Sbjct: 279 EDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTV-LHQDWLNGKEYKCKVSNKA 337
Query: 428 ----VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PTPQLI-WY 481
+ ++ + P+ Y P EL + VSL C V G P+ + W
Sbjct: 338 LPAPIEKTISKAKGQPREPQVYTLPPSRDEL-----TKNQVSLTCLVKGFYPSDIAVEWE 392
Query: 482 KDNKKIKAGDIFA--------------LTANPKDPSSLGTYTCEA 512
+ + LT + ++C
Sbjct: 393 SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV 437
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_A* 3hs0_A*
Length = 627
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/153 (13%), Positives = 41/153 (26%), Gaps = 6/153 (3%)
Query: 587 NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
+ E + + G +I Y + + K + L
Sbjct: 429 STEIKPGDNLPVNFNVKGNANSLKQIKYFTYLILNKGKIFKVGRQPRRDGQNLVTMNLHI 488
Query: 647 KNYRKPRFVESLKAVMTDDGLV--SFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
P F + ++ +V S V TL DN PG ++
Sbjct: 489 TPDLIPSFRFVAYYQVGNNEIVADSVWVDVKDTCMGTLVVKGDNLIQMPGAAMKIKLEGD 548
Query: 705 LGSYCCVA---KNVMGKAESSTQLTIEDIRNHL 734
G+ + K V +++ I + +
Sbjct: 549 PGARVGLVAVDKAVYV-LNDKYKISQAKIWDTI 580
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 29.4 bits (65), Expect = 2.4
Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 15/76 (19%)
Query: 466 LECKVM-GIPTPQLIWYKDNKKI--------------KAGDIFALTANPKDPSSLGTYTC 510
LEC V P + W K N K F L P P+ G+Y C
Sbjct: 31 LECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC 90
Query: 511 EAVNCMGAAFSTSRVI 526
A S S +
Sbjct: 91 SANFQSNLIESHSTTL 106
Score = 28.3 bits (62), Expect = 6.6
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA----DGLGG 607
++IK G LEC V + W G + + +
Sbjct: 13 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF 72
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
+ + + D+G ++C A S + + + ++V
Sbjct: 73 FILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 30.4 bits (68), Expect = 3.3
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 805 CHLKIHALEVADQAEWKCIATND-------FGQSITSCFLKLNVPKHYKKPKFLEELKAV 857
C L+I + E D A + C ++ + FG L+ + E +A
Sbjct: 101 CSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAE 160
Query: 858 LSEGGAVNLECKVIG--VPQPTLKWFKDGRELKAG 890
+S L C G L W+ +G+E+ +G
Sbjct: 161 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 195
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 29.9 bits (67), Expect = 3.7
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 857 VLSEGGAVNLECKVIGV----PQPTLKWFKDGRELKAGDIHKIISGEDGT 902
L + C V+ V P+ W+ DG E+ + T
Sbjct: 35 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNST 84
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 28.1 bits (62), Expect = 3.9
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 378 EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426
+ + W +N ++L + HD + D S V DSG + C
Sbjct: 26 DENLKWEKNGQELPQK------HDKHLVLQDFSEVE--DSGYYVCYTPA 66
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 30.0 bits (67), Expect = 4.2
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYK-----KPKFLEELKAVLS 859
LKI E D A + C + +L V + K + E +A +S
Sbjct: 100 STLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEIS 159
Query: 860 EGGAVNLECKVIG-VPQP-TLKWFKDGRELKAG 890
L C G P L W+ +G+E+ +G
Sbjct: 160 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 192
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 28.8 bits (64), Expect = 4.7
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 72 NRAQGDHPIFGNRFRAINRDGRTE---LNIRRVRRDDGGRYSVTASNES-GYSTAKFELS 127
N A +RF + D +T+ L+IR R D GRY + ++ +LS
Sbjct: 64 NPAWAVQEETRDRFH-LLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLS 122
Query: 128 VESQVPDAP 136
V V
Sbjct: 123 V--NVTALT 129
Score = 28.8 bits (64), Expect = 5.5
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 174 TIPFSFRAQGDHPIFGNRFRAINRDGRTE---LNIRRVRRDDGGRYSVTASNES-GYSTA 229
+ + A +RF + D +T+ L+IR R D GRY + ++
Sbjct: 59 PVATNNPAWAVQEETRDRFH-LLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYK 117
Query: 230 KFELSVESQVPDAP 243
+LSV V
Sbjct: 118 YDQLSV--NVTALT 129
Score = 28.8 bits (64), Expect = 5.5
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 281 TIPFSFRAQGDHPIFGNRFRAINRDGRTE---LNIRRVRRDDGGRYSVTASNES-GYSTA 336
+ + A +RF + D +T+ L+IR R D GRY + ++
Sbjct: 59 PVATNNPAWAVQEETRDRFH-LLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYK 117
Query: 337 KFELSVESQVPDAP 350
+LSV V
Sbjct: 118 YDQLSV--NVTALT 129
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 29.0 bits (65), Expect = 6.9
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA----LTANPKDPSSLGTYTCEA 512
++++ K+ G + + ++ LT + +YTCEA
Sbjct: 184 KDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEA 238
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 29.2 bits (66), Expect = 7.0
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 859 SEGGAVNLECKVIGV-PQP-TLKWFKDGRELKAGDIHKIISGEDGT 902
G + L C V G P + K+G ++ + + +D +
Sbjct: 16 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWS 61
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus
musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Length = 159
Score = 28.4 bits (64), Expect = 7.1
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 412 VSLFDSGRWTCLAENAVGRSHCSCEL---SVLVPKAYKAPFFTKELEAILTE 460
V + W +A R+ C+ VL P+ K P +TKE + + +
Sbjct: 21 VEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGP-WTKEEDQRVIK 71
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 28.8 bits (64), Expect = 7.4
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 17/72 (23%)
Query: 458 LTEQGTVSLECKVMGIPTPQLI---WYKDNKKIKAGDIFA--------------LTANPK 500
L L C V+ +P+ + W ++ D + + +
Sbjct: 25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQ 84
Query: 501 DPSSLGTYTCEA 512
D S +TC
Sbjct: 85 DWLSGERFTCTV 96
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
{Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A*
2aru_A* 2c7i_A 2ars_A* 3r07_A
Length = 262
Score = 28.9 bits (65), Expect = 7.5
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 24/109 (22%)
Query: 297 NRFRAINRDGRTELNIRRVRRDDGGR----------YSVTASNESGYSTAKFELSVESQV 346
++ D + I RR GG +SV S++ T+ F E
Sbjct: 52 VAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNE--- 108
Query: 347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI 395
A + L + + V I + D E KI
Sbjct: 109 ----AVVNSLRILGLDARPGELNDVSIPVNK-------KTDIMAGEKKI 146
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 28.7 bits (65), Expect = 8.1
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 17/69 (24%)
Query: 461 QGTVSLECKVMG-IPTPQLIWYKDNKKIKAG------------DIFA----LTANPKDPS 503
GTV++ C P + W D G + LT + +
Sbjct: 129 TGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYN 188
Query: 504 SLGTYTCEA 512
S YTC+
Sbjct: 189 SHKEYTCKV 197
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation
protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio
parahaemolyticus rimd 2210633}
Length = 115
Score = 27.8 bits (62), Expect = 8.2
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 969 SIEEREISFSFDGKEVSVSLYETPDLTEEEAIKVVEM 1005
SI + +++F DG+ + + + +P + + + +VEM
Sbjct: 75 SITDSDVTFVVDGRPLMLEVTVSPITWQRQLMLLVEM 111
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 27.7 bits (62), Expect = 8.3
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 460 EQGTVSLECKVMGIPTPQLIWYKDNKKI 487
+ + + + +PT I K+ +K+
Sbjct: 73 KLEETARKYNISAMPT--FIAIKNGEKV 98
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 28.8 bits (65), Expect = 9.6
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 859 SEGGAVNLECKVIGV-PQP-TLKWFKDGRELKAGDIHKIISGEDGT 902
G + L C V G P + K+G ++ + + +D +
Sbjct: 19 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWS 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,659,235
Number of extensions: 1041833
Number of successful extensions: 8315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4782
Number of HSP's successfully gapped: 1692
Length of query: 1075
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 971
Effective length of database: 3,798,009
Effective search space: 3687866739
Effective search space used: 3687866739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.1 bits)