BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16867
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 39/250 (15%)
Query: 30 KLKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVR 86
K+K+F++ N+ + +TGAGIST SGIPD+R G+Y + + DF S
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDI-DFFYSHPEE 59
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+A+ + +P + +PN H L ++E+ + +ITQN+D LH +AG+KKVIE+HG
Sbjct: 60 FYRFAKEGI-FPMLQA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
C+ C+ ++ + +++ L ES + VP C
Sbjct: 118 NVEEYYCVRCE---KKYTVEDVIKKL------ESSD------------------VPLCDD 150
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV-PI----LVKEHAKGYL 261
C+ ++P+IVFFG+N+P+ + + L ++VLGSSL V P L+ + G L
Sbjct: 151 CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKL 210
Query: 262 GKGNVQTTPF 271
N+ TPF
Sbjct: 211 VIVNLGETPF 220
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 32/226 (14%)
Query: 25 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRR 84
E +I K + + K +V TGAGIS ESGIP +R E GL+ + D P + +R
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGED-GLWRKYD--PEEVASISGFKR 58
Query: 85 VRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM 144
+W + + + +PN HYA+ ++E + +ITQN+D LH +AG+++V+E+
Sbjct: 59 NPRAFWEFSMEMKDKLFA-EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLEL 117
Query: 145 HGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQC 204
HG+ ++ CL C D +F +ED N K +P+C
Sbjct: 118 HGSMDKLDCLDCHETYDWSEF---VEDFN------------------------KGEIPRC 150
Query: 205 PHCHG-DLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
C +KP +V FG+ +P+ + + + CD +V+GSSL V
Sbjct: 151 RKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVV 196
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 39/250 (15%)
Query: 30 KLKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVR 86
K+K+F++ N+ + +TGAGIST SGIPD+R G+Y + + DF S
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDI-DFFYSHPEE 59
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+A+ + +P + +PN H L ++E+ + +ITQN+D LH +AG+KKVIE++G
Sbjct: 60 FYRFAKEGI-FPMLQA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
C+ C+ ++ + +++ L ES + VP C
Sbjct: 118 NVEEYYCVRCE---KKYTVEDVIKKL------ESSD------------------VPLCDD 150
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV-PI----LVKEHAKGYL 261
C+ ++P+IVFFG+N+P+ + + L ++VLGSSL V P L+ + G L
Sbjct: 151 CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKL 210
Query: 262 GKGNVQTTPF 271
N+ TPF
Sbjct: 211 VIVNLGETPF 220
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 40/264 (15%)
Query: 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 81
S + ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 9 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 62
Query: 82 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 133
SR ++ R +G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 63 AHNPSRVWEFYHYRREVMG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 117
Query: 134 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 193
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 118 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 169
Query: 194 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLG-SSLTVP 250
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G SS+ P
Sbjct: 170 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 227
Query: 251 ILV---KEHAKGY-LGKGNVQTTP 270
+ + A+G + + N +TTP
Sbjct: 228 AAMFAPQVAARGVPVAEFNTETTP 251
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 40/264 (15%)
Query: 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 81
S + ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 11 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 64
Query: 82 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 133
SR ++ R +G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 65 AHNPSRVWEFYHYRREVMG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 119
Query: 134 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 193
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 120 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 171
Query: 194 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLG-SSLTVP 250
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G SS+ P
Sbjct: 172 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 229
Query: 251 ILV---KEHAKGY-LGKGNVQTTP 270
+ + A+G + + N +TTP
Sbjct: 230 AAMFAPQVAARGVPVAEFNTETTP 253
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 40/264 (15%)
Query: 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 81
S + ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 7 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 60
Query: 82 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 133
SR ++ R +G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 61 AHNPSRVWEFYHYRREVMG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 115
Query: 134 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 193
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 116 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 167
Query: 194 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLG-SSLTVP 250
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G SS+ P
Sbjct: 168 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 225
Query: 251 ILV---KEHAKGY-LGKGNVQTTP 270
+ + A+G + + N +TTP
Sbjct: 226 AAMFAPQVAARGVPVAEFNTETTP 249
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 40/264 (15%)
Query: 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 81
S + ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 3 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 56
Query: 82 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 133
SR ++ R +G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 57 AHNPSRVWEFYHYRREVMG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 111
Query: 134 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 193
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 112 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 163
Query: 194 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLG-SSLTVP 250
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G SS+ P
Sbjct: 164 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 221
Query: 251 ILV---KEHAKGY-LGKGNVQTTP 270
+ + A+G + + N +TTP
Sbjct: 222 AAMFAPQVAARGVPVAEFNTETTP 245
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 39/250 (15%)
Query: 30 KLKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVR 86
K+K+F++ N+ + +TGAGIST SGIPD+R G+Y + + DF S
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDI-DFFYSHPEE 59
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+A+ + +P + +PN H L ++E+ + +ITQN+D LH +AG+KKVIE+ G
Sbjct: 60 FYRFAKEGI-FPMLQA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELAG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
C+ C+ ++ + +++ L ES + VP C
Sbjct: 118 NVEEYYCVRCE---KKYTVEDVIKKL------ESSD------------------VPLCDD 150
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV-PI----LVKEHAKGYL 261
C+ ++P+IVFFG+N+P+ + + L ++VLGSSL V P L+ + G L
Sbjct: 151 CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKL 210
Query: 262 GKGNVQTTPF 271
N+ TPF
Sbjct: 211 VIVNLGETPF 220
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 35/238 (14%)
Query: 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 81
S ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 7 SSXADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 60
Query: 82 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 133
SR ++ R G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 61 AHNPSRVWEFYHYRREVXG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 115
Query: 134 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 193
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 116 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 167
Query: 194 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G+S V
Sbjct: 168 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVV 223
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 37/241 (15%)
Query: 14 ISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP 73
ISF+ K + + +L + I+K ++ +TG+G S ES IP +R ++++ D R
Sbjct: 23 ISFLKK--DTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRI 80
Query: 74 VQ----FQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNV 129
F + + IR + ++ + N H AL +E L ++TQNV
Sbjct: 81 YGTIWGFWKYPEKIWEVIRDISSDY-------EIEINNGHVALSTLESLGYLKSVVTQNV 133
Query: 130 DGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDV 189
DGLH +GN KVI +HG F +C C+ + K KI+ M P
Sbjct: 134 DGLHEASGNTKVISLHGNVFEAVCCTCNKIV---KLNKIMLQKTSHFM----HQLP---- 182
Query: 190 EMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
P+CP C G KP+I+ FG+ + +++ + + CD +LV+G+S TV
Sbjct: 183 ------------PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTV 229
Query: 250 P 250
Sbjct: 230 S 230
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 108/222 (48%), Gaps = 46/222 (20%)
Query: 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWP 98
+++V+ GAGIST SGIPD+RS G GLY+ + + + + + + ++ N P
Sbjct: 17 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAI----FELPFFFHN--PKP 70
Query: 99 RFS--------SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTA 148
F+ +++PN HY L+ + D L + TQN+DGL +G K++E HGT
Sbjct: 71 FFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTF 130
Query: 149 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCH 208
C C ED+ D+M + VP+CP C
Sbjct: 131 ASATCTVCQRPFPG-------EDIRADVMAD--------------------RVPRCPVCT 163
Query: 209 GDLKPDIVFFGDNIP-RHRMEKIDHLVRSCDGVLVLGSSLTV 249
G +KPDIVFFG+ +P R + +D + D +L+LG+SL V
Sbjct: 164 GVVKPDIVFFGEPLPQRFLLHVVDFPM--ADLLLILGTSLEV 203
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 46/222 (20%)
Query: 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWP 98
+++V+ GAGIST SGIPD+RS G GLY+ + + + + + + ++ N P
Sbjct: 23 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAI----FELPFFFHN--PKP 76
Query: 99 RFS--------SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTA 148
F+ +++PN HY L+ + D L + TQN+DGL +G K++E HGT
Sbjct: 77 FFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTF 136
Query: 149 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCH 208
C C + F ED+ D+M + VP+CP C
Sbjct: 137 ASATCTVC-----QRPFPG--EDIRADVMAD--------------------RVPRCPVCT 169
Query: 209 GDLKPDIVFFGDNIP-RHRMEKIDHLVRSCDGVLVLGSSLTV 249
G +KPDIVFFG+ +P R + +D + D +L+LG+SL V
Sbjct: 170 GVVKPDIVFFGEPLPQRFLLHVVDFPM--ADLLLILGTSLEV 209
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 46/222 (20%)
Query: 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWP 98
+++V+ GAGIST SGIPD+RS G GLY+ + + + + + + ++ N P
Sbjct: 24 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAI----FELPFFFHN--PKP 77
Query: 99 RFS--------SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTA 148
F+ +++PN HY L+ + D L + TQN+DGL +G K++E HGT
Sbjct: 78 FFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTF 137
Query: 149 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCH 208
C C + F ED+ D+M + VP+CP C
Sbjct: 138 ASATCTVC-----QRPFPG--EDIRADVMAD--------------------RVPRCPVCT 170
Query: 209 GDLKPDIVFFGDNIP-RHRMEKIDHLVRSCDGVLVLGSSLTV 249
G +KPDIVFFG+ +P R + +D + D +L+LG+SL V
Sbjct: 171 GVVKPDIVFFGEPLPQRFLLHVVDFPM--ADLLLILGTSLEV 210
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 47/231 (20%)
Query: 33 QFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRV-RIRYWA 91
+ +++ KI+V+TGAG+S GIPD+RS G+YAR V F D + + I Y+
Sbjct: 11 KLLQECKKIIVLTGAGVSVSCGIPDFRSRD-GIYAR---LAVDFPDLPDPQAMFDIEYFR 66
Query: 92 RNFVGWPRFS------SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH 145
++ + +F+ FQP+ H + + KL TQN+D L AG +++I+ H
Sbjct: 67 KDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCH 126
Query: 146 GTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCP 205
G+ CL C Y++D + +R D I VP+CP
Sbjct: 127 GSFATASCLICKYKVD------------------CEAVRGD---------IFNQVVPRCP 159
Query: 206 HCHGD-----LKPDIVFFGDNIPR--HRMEKIDHLVRSCDGVLVLGSSLTV 249
C D +KP+IVFFG+N+P HR K D D ++V+GSSL V
Sbjct: 160 RCPADEPLAIMKPEIVFFGENLPEQFHRAMKYDK--DEVDLLIVIGSSLKV 208
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 46/252 (18%)
Query: 30 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 86
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+++A + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------PILVKEHAKGY 260
C L+P +V+FG+ +P +++ V D ++V G+S V P++VK+ G
Sbjct: 148 CGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRG-GA 206
Query: 261 LGKGNVQTTPFS 272
+ + N TP +
Sbjct: 207 IIEINPDETPLT 218
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 46/252 (18%)
Query: 30 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 86
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 15 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 71
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+++A + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 72 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 128
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
+ V C C+ + KI P L P+C
Sbjct: 129 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 158
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------PILVKEHAKGY 260
C L+P +V+FG+ +P +++ V D ++V G+S V P++VK+ G
Sbjct: 159 CGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRG-GA 217
Query: 261 LGKGNVQTTPFS 272
+ + N TP +
Sbjct: 218 IIEINPDETPLT 229
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 46/252 (18%)
Query: 30 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 86
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+++A + + QPN H A ++E L +ITQNVDGLH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------PILVKEHAKGY 260
C L+P +V+ G+ +P ++ V D ++V G+S V P++VK+ G
Sbjct: 148 CGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASLPLIVKQRG-GA 206
Query: 261 LGKGNVQTTPFS 272
+ + N TP +
Sbjct: 207 IIEINPDETPLT 218
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 35/233 (15%)
Query: 21 KPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQ----F 76
K + + +L + I+K ++ +TG+G S ES IP +R ++++ D R F
Sbjct: 3 KDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGF 62
Query: 77 QDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKA 136
+ + IR + ++ + N H AL +E L ++TQNVDGLH +
Sbjct: 63 WKYPEKIWEVIRDISSDY-------EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEAS 115
Query: 137 GNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETI 196
GN KVI +HG F +C C+ KI++ LN + ++
Sbjct: 116 GNTKVISLHGNVFEAVCCTCN---------KIVK-LNKIXLQKTSHFXHQLP-------- 157
Query: 197 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
P+CP C G KP+I+ FG+ + +++ + + CD +LV+G+S TV
Sbjct: 158 -----PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTV 204
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 46/252 (18%)
Query: 30 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 86
KL + I + ++ +TGAG++ ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVAAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+++A + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------PILVKEHAKGY 260
C L+P +V+FG+ +P +++ V D ++V G+S V P++VK+ G
Sbjct: 148 CGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRG-GA 206
Query: 261 LGKGNVQTTPFS 272
+ + N TP +
Sbjct: 207 IIEINPDETPLT 218
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 46/252 (18%)
Query: 30 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 86
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+++A + + QPN + A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------PILVKEHAKGY 260
C L+P +V+FG+ +P +++ V D ++V G+S V P++VK+ G
Sbjct: 148 CGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRG-GA 206
Query: 261 LGKGNVQTTPFS 272
+ + N TP +
Sbjct: 207 IIEINPDETPLT 218
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 115/252 (45%), Gaps = 46/252 (18%)
Query: 30 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 86
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
+++A + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 117
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------PILVKEHAKGY 260
C L+P +V+ G+ +P +++ V D ++V G+S V P++VK+ G
Sbjct: 148 CGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRG-GA 206
Query: 261 LGKGNVQTTPFS 272
+ + N TP +
Sbjct: 207 IIEINPDETPLT 218
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 43/243 (17%)
Query: 19 KHKPVEESDINKLKQFI--EKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF 76
K + ++E + + +++ E+ +++ + GAGIST +GIPD+RS GLY +K + +
Sbjct: 22 KERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPY 81
Query: 77 QDFLKSRRVRIRYWARNFVGWPRFS--------SFQPNANHYALKQMEDNEKLSYIITQN 128
+ + I Y+ ++ P F+ F+P HY ++ ++D L TQN
Sbjct: 82 PEAI----FEISYFKKH--PEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQN 135
Query: 129 VDGLHYKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPD 186
+D L AG + ++E HGT + C+ S R +
Sbjct: 136 IDTLERIAGLEQEDLVEAHGTFYTSHCV-------------------------SASCRHE 170
Query: 187 GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 246
+ +E I P+C C +KPDIVFFG+++P + D +LV+G+S
Sbjct: 171 YPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTS 230
Query: 247 LTV 249
L V
Sbjct: 231 LQV 233
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 43/243 (17%)
Query: 19 KHKPVEESDINKLKQFI--EKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF 76
K + ++E + + +++ E+ +++ + GAGIST +GIPD+RS GLY +K + +
Sbjct: 22 KERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPY 81
Query: 77 QDFLKSRRVRIRYWARNFVGWPRFS--------SFQPNANHYALKQMEDNEKLSYIITQN 128
+ + I Y+ ++ P F+ F+P HY ++ ++D L TQN
Sbjct: 82 PEAI----FEISYFKKH--PEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQN 135
Query: 129 VDGLHYKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPD 186
+D L AG + ++E HGT + C+ S R +
Sbjct: 136 IDTLERIAGLEQEDLVEAHGTFYTSHCV-------------------------SASCRHE 170
Query: 187 GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 246
+ +E I P+C C +KPDIVFFG+++P + D +LV+G+S
Sbjct: 171 YPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTS 230
Query: 247 LTV 249
L V
Sbjct: 231 LQV 233
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 93
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 32 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 91
Query: 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 151
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 92 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 147
Query: 152 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211
C+GC + P + +S+ ++E I F +C C +
Sbjct: 148 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDF--VKCDVCGELV 183
Query: 212 KPDIVFFGDNIP 223
KP IVFFG+++P
Sbjct: 184 KPAIVFFGEDLP 195
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 93
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 29 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 88
Query: 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 151
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 89 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 144
Query: 152 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211
C+GC + P + +S+ ++E I F +C C +
Sbjct: 145 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDF--VKCDVCGELV 180
Query: 212 KPDIVFFGDNIP 223
KP IVFFG+++P
Sbjct: 181 KPAIVFFGEDLP 192
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 93
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 22 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 81
Query: 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 151
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 82 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 137
Query: 152 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211
C+GC + P + +S+ ++E I F +C C +
Sbjct: 138 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDF--VKCDVCGELV 173
Query: 212 KPDIVFFGDNIP 223
KP IVFFG+++P
Sbjct: 174 KPAIVFFGEDLP 185
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 93
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 40 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 99
Query: 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 151
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 100 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 155
Query: 152 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211
C+GC + P + +S+ ++E I F +C C +
Sbjct: 156 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDF--VKCDVCGELV 191
Query: 212 KPDIVFFGDNIP 223
KP IVFFG+++P
Sbjct: 192 KPAIVFFGEDLP 203
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 93
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 30 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 89
Query: 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 151
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 90 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 145
Query: 152 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211
C+GC + P + +S+ ++E I F +C C +
Sbjct: 146 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDF--VKCDVCGELV 181
Query: 212 KPDIVFFGDNIP 223
KP IVFFG+++P
Sbjct: 182 KPAIVFFGEDLP 193
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 36/192 (18%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 93
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 40 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 99
Query: 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 151
+P +F+P+ HY LK +D + L + TQN D L +AG K +IE HG+
Sbjct: 100 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHC 155
Query: 152 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211
C+GC + P + +S+ ++E I F +C C +
Sbjct: 156 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDF--VKCDVCGELV 191
Query: 212 KPDIVFFGDNIP 223
KP IVFFG+++P
Sbjct: 192 KPAIVFFGEDLP 203
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 28/245 (11%)
Query: 26 SDINKLKQFIEKYN---KILVVTGAGISTESGIPDYRSEGVGLYAR------SDKRPV-Q 75
S+ + FI+K + KILV+TGAG+ST GIPD+RS G Y++ D + V
Sbjct: 169 SNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSE-GFYSKIKHLGLDDPQDVFN 227
Query: 76 FQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYK 135
+ F+ V Y N V P + P H +K ++ KL TQN+D L
Sbjct: 228 YNIFMHDPSVF--YNIANMVLPPE-KIYSPL--HSFIKMLQMKGKLLRNYTQNIDNLESY 282
Query: 136 AG--NKKVIEMHGTAFRVMCLGCDYEIDRHK-FQKI--LE-DLNPDLMIESQEMRPDG-- 187
AG K+++ HG+ C+ C + + + F KI LE L P + +E P+G
Sbjct: 283 AGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYN 342
Query: 188 ---DVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLG 244
V S+ ++S+ P + +G LKPDI FFG+ +P + I + CD ++ +G
Sbjct: 343 NKVGVAASQGSMSE-RPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIG 401
Query: 245 SSLTV 249
+SL V
Sbjct: 402 TSLKV 406
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 26/244 (10%)
Query: 26 SDINKLKQFIEKYN---KILVVTGAGISTESGIPDYRSEGVGLYAR------SDKRPVQF 76
S+ + FI+K + KILV+TGAG+ST GIPD+RS G Y++ D + V F
Sbjct: 31 SNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSE-GFYSKIKHLGLDDPQDV-F 88
Query: 77 QDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKA 136
+ + Y N V P + P H +K ++ KL TQN+D L A
Sbjct: 89 NYNIFXHDPSVFYNIANXVLPPE-KIYSPL--HSFIKXLQXKGKLLRNYTQNIDNLESYA 145
Query: 137 G--NKKVIEMHGTAFRVMCLGCDYEIDRHK-FQKI--LE-DLNPDLMIESQEMRPDG--- 187
G K+++ HG+ C+ C + + + F KI LE L P + +E P+G
Sbjct: 146 GISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNN 205
Query: 188 --DVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGS 245
V S+ + S+ P + +G LKPDI FFG+ +P + I + CD ++ +G+
Sbjct: 206 KVGVAASQGSXSE-RPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGT 264
Query: 246 SLTV 249
SL V
Sbjct: 265 SLKV 268
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 40/227 (17%)
Query: 25 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRR 84
E + +L + + + + ++ TGAGIST SGIPD+R G++ ++ D
Sbjct: 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPH-GVWTMEERGLAPKFDTT---- 85
Query: 85 VRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVI 142
F S +P H AL Q+E L ++++QNVDGLH ++G K+
Sbjct: 86 ---------------FESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLA 130
Query: 143 EMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVP 202
E+HG F C C + R D ++ + ++ G + T++K
Sbjct: 131 ELHGNMFVEECAKCKTQYVR------------DTVVGTMGLKATGRL----CTVAKARGL 174
Query: 203 QCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
+ C G+L+ I+ + D++P + D R+ D + LG+SL +
Sbjct: 175 RA--CRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQI 219
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 40/227 (17%)
Query: 25 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRR 84
E + +L + + + + ++ TGAGIST SGIPD+R G++ ++ D
Sbjct: 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPH-GVWTMEERGLAPKFDTT---- 85
Query: 85 VRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVI 142
F S +P H AL Q+E L ++++QNVDGLH ++G K+
Sbjct: 86 ---------------FESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLA 130
Query: 143 EMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVP 202
E+HG F C C + R D ++ + ++ G + T++K
Sbjct: 131 ELHGNMFVEECAKCKTQYVR------------DTVVGTMGLKATGRL----CTVAKARGL 174
Query: 203 QCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
+ C G+L+ I+ + D++P + D R+ D + LG+SL +
Sbjct: 175 RA--CRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQI 219
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 22/125 (17%)
Query: 40 KILVVTGAGISTESGIPDYRS----------EGVGLYARSDKRPVQFQDFLKSRRVRIRY 89
++LV+TGAGIS ESGI +R+ E V D+ P Q F +RR +++
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQ 62
Query: 90 WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYI-ITQNVDGLHYKAGNKKVIEMHGTA 148
QPNA H AL +++D ++ +TQN+D LH +AGN VI MHG
Sbjct: 63 -----------PEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL 111
Query: 149 FRVMC 153
+V C
Sbjct: 112 LKVRC 116
>pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The
Escherichia Coli Sulfite Reductase
Length = 167
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 106 NANHYALKQMEDNEKLSYIIT---------QNVDGLHYKAGNKKVIEMHGTAFRVMCLG- 155
NA Y KQ+ +EKL ++T + LH +KK ++ TAF V LG
Sbjct: 45 NAGDYKFKQIA-SEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGD 103
Query: 156 CDYEI---DRHKFQKILEDLNPDLMIESQEMRPDGDVE 190
YE F L +L + +++ R D DVE
Sbjct: 104 TSYEFFCQSGKDFDSKLAELGGERLLD----RVDADVE 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,680,153
Number of Sequences: 62578
Number of extensions: 368463
Number of successful extensions: 1058
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 54
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)