Query psy16867
Match_columns 275
No_of_seqs 142 out of 1215
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:07:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 6.8E-61 1.5E-65 425.3 24.1 241 31-273 1-246 (260)
2 KOG2683|consensus 100.0 6E-61 1.3E-65 404.6 22.4 271 3-274 11-289 (305)
3 PRK05333 NAD-dependent deacety 100.0 4.5E-58 9.8E-63 412.8 25.8 249 22-274 3-257 (285)
4 PRK14138 NAD-dependent deacety 100.0 1.1E-55 2.3E-60 388.8 23.4 213 29-273 2-220 (244)
5 PTZ00409 Sir2 (Silent Informat 100.0 5.5E-55 1.2E-59 388.5 21.3 221 23-272 13-240 (271)
6 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 3.9E-55 8.5E-60 380.6 19.9 207 35-273 1-213 (222)
7 COG0846 SIR2 NAD-dependent pro 100.0 5.5E-55 1.2E-59 382.1 20.4 216 28-274 2-225 (250)
8 PRK00481 NAD-dependent deacety 100.0 3.8E-54 8.2E-59 379.3 22.0 212 27-273 2-219 (242)
9 cd01411 SIR2H SIR2H: Uncharact 100.0 7.6E-54 1.7E-58 373.1 21.1 204 31-273 1-212 (225)
10 cd01407 SIR2-fam SIR2 family o 100.0 1.5E-52 3.3E-57 363.7 21.3 202 39-273 1-209 (218)
11 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 5.5E-52 1.2E-56 363.5 19.2 202 39-272 1-215 (235)
12 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 1E-51 2.2E-56 355.0 19.1 191 39-274 1-198 (206)
13 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 1.8E-51 3.8E-56 358.6 19.9 200 39-273 1-206 (224)
14 PTZ00408 NAD-dependent deacety 100.0 3.1E-51 6.7E-56 359.4 19.3 202 36-273 2-214 (242)
15 PTZ00410 NAD-dependent SIR2; P 100.0 9.2E-51 2E-55 369.2 21.0 216 23-269 12-242 (349)
16 PF02146 SIR2: Sir2 family; I 100.0 2.5E-48 5.5E-53 327.4 11.8 174 46-250 1-177 (178)
17 cd00296 SIR2 SIR2 superfamily 100.0 1.3E-46 2.9E-51 327.1 20.9 201 39-272 1-210 (222)
18 KOG2684|consensus 100.0 2.2E-43 4.7E-48 319.9 17.6 212 26-270 76-318 (412)
19 KOG2682|consensus 100.0 6.7E-41 1.4E-45 283.3 10.0 213 25-269 21-249 (314)
20 KOG1905|consensus 100.0 5.2E-39 1.1E-43 279.6 7.9 207 23-272 40-257 (353)
21 cd01406 SIR2-like Sir2-like: P 99.3 1.7E-12 3.6E-17 114.3 6.4 112 39-151 1-149 (242)
22 PF13289 SIR2_2: SIR2-like dom 94.5 0.029 6.4E-07 44.4 2.7 14 123-136 2-15 (143)
23 PF07295 DUF1451: Protein of u 92.9 0.063 1.4E-06 43.7 1.9 14 148-161 110-123 (146)
24 PRK11032 hypothetical protein; 92.6 0.079 1.7E-06 43.7 2.1 13 148-160 122-134 (160)
25 smart00834 CxxC_CXXC_SSSS Puta 90.0 0.19 4.2E-06 31.1 1.5 13 200-212 25-37 (41)
26 PF09723 Zn-ribbon_8: Zinc rib 89.6 0.23 5E-06 31.4 1.6 14 148-161 3-16 (42)
27 TIGR00373 conserved hypothetic 89.4 0.4 8.7E-06 39.5 3.4 63 102-164 39-123 (158)
28 PF00205 TPP_enzyme_M: Thiamin 85.9 1.4 3.1E-05 34.7 4.6 45 229-273 70-118 (137)
29 PRK06260 threonine synthase; V 84.6 0.59 1.3E-05 44.2 2.1 13 149-161 2-14 (397)
30 PRK06266 transcription initiat 83.3 0.89 1.9E-05 38.2 2.4 39 143-213 110-148 (178)
31 TIGR02098 MJ0042_CXXC MJ0042 f 83.2 0.75 1.6E-05 28.1 1.4 12 201-212 25-36 (38)
32 PF02591 DUF164: Putative zinc 83.1 1.7 3.7E-05 29.1 3.3 42 139-211 15-56 (56)
33 PF09845 DUF2072: Zn-ribbon co 83.0 0.57 1.2E-05 37.2 1.0 11 151-161 2-12 (131)
34 TIGR00354 polC DNA polymerase, 82.7 0.67 1.5E-05 47.9 1.6 38 143-215 1000-1042(1095)
35 TIGR02605 CxxC_CxxC_SSSS putat 82.3 0.93 2E-05 29.7 1.7 13 149-161 4-16 (52)
36 PF09538 FYDLN_acid: Protein o 81.9 0.89 1.9E-05 35.0 1.7 14 201-214 26-39 (108)
37 PRK00398 rpoP DNA-directed RNA 81.3 1 2.2E-05 28.9 1.6 12 150-161 3-14 (46)
38 COG3364 Zn-ribbon containing p 80.9 0.63 1.4E-05 35.2 0.5 11 151-161 3-13 (112)
39 PRK04023 DNA polymerase II lar 80.2 0.92 2E-05 47.2 1.6 38 143-215 1025-1067(1121)
40 PRK14714 DNA polymerase II lar 79.1 1 2.2E-05 48.0 1.6 38 143-215 1241-1283(1337)
41 PRK07591 threonine synthase; V 78.0 1.4 3.1E-05 42.0 2.1 13 202-214 34-46 (421)
42 COG1379 PHP family phosphoeste 77.9 0.56 1.2E-05 42.8 -0.6 41 143-215 239-279 (403)
43 smart00531 TFIIE Transcription 77.3 2 4.3E-05 34.8 2.5 15 150-164 99-113 (147)
44 PF13248 zf-ribbon_3: zinc-rib 76.8 1 2.2E-05 25.3 0.5 11 201-211 16-26 (26)
45 PRK12496 hypothetical protein; 75.5 1.6 3.4E-05 36.2 1.5 11 150-160 127-137 (164)
46 COG1579 Zn-ribbon protein, pos 75.5 2.3 4.9E-05 37.5 2.5 41 140-211 191-231 (239)
47 PF13719 zinc_ribbon_5: zinc-r 75.1 2.1 4.5E-05 26.2 1.5 13 150-162 2-14 (37)
48 PF13717 zinc_ribbon_4: zinc-r 74.6 2.2 4.7E-05 26.0 1.5 14 150-163 2-15 (36)
49 TIGR03844 cysteate_syn cysteat 73.9 2.1 4.5E-05 40.6 2.0 12 149-160 1-12 (398)
50 PRK00564 hypA hydrogenase nick 73.8 1.6 3.4E-05 34.1 1.0 20 141-160 62-81 (117)
51 PRK06450 threonine synthase; V 73.6 2.2 4.8E-05 39.5 2.1 10 151-160 4-13 (338)
52 TIGR02300 FYDLN_acid conserved 72.9 2.4 5.1E-05 33.5 1.8 14 201-214 26-39 (129)
53 PRK14715 DNA polymerase II lar 72.7 1.9 4.2E-05 46.2 1.6 15 201-215 1557-1571(1627)
54 smart00659 RPOLCX RNA polymera 70.9 3.3 7.1E-05 26.5 1.8 11 201-211 19-29 (44)
55 PRK08273 thiamine pyrophosphat 70.8 5.5 0.00012 39.7 4.3 44 229-272 265-308 (597)
56 cd00350 rubredoxin_like Rubred 69.9 3.5 7.6E-05 24.5 1.7 10 151-160 2-11 (33)
57 COG1996 RPC10 DNA-directed RNA 69.2 3 6.5E-05 27.3 1.4 11 201-211 24-34 (49)
58 cd00729 rubredoxin_SM Rubredox 68.9 3.3 7.2E-05 24.9 1.4 11 150-160 2-12 (34)
59 PF13240 zinc_ribbon_2: zinc-r 68.5 2.5 5.4E-05 23.1 0.7 11 204-214 2-12 (23)
60 COG2331 Uncharacterized protei 67.8 2.2 4.8E-05 30.5 0.5 21 200-220 32-57 (82)
61 PRK05858 hypothetical protein; 67.7 8.4 0.00018 37.9 4.8 55 218-272 244-299 (542)
62 PF12172 DUF35_N: Rubredoxin-l 67.5 2.2 4.7E-05 25.9 0.4 16 145-160 6-21 (37)
63 PRK12380 hydrogenase nickel in 66.3 3.1 6.8E-05 32.2 1.2 20 141-160 61-80 (113)
64 cd00730 rubredoxin Rubredoxin; 65.4 6.2 0.00013 26.0 2.3 11 151-161 2-12 (50)
65 TIGR00100 hypA hydrogenase nic 65.4 3.4 7.3E-05 32.1 1.2 18 143-160 63-80 (115)
66 PF05191 ADK_lid: Adenylate ki 65.0 5.3 0.00011 24.4 1.8 11 151-161 2-12 (36)
67 KOG2906|consensus 63.6 5.4 0.00012 30.0 1.9 22 141-162 12-33 (105)
68 PRK14873 primosome assembly pr 63.0 45 0.00098 33.9 9.0 44 107-158 357-400 (665)
69 COG1439 Predicted nucleic acid 62.9 4.7 0.0001 33.8 1.7 13 201-213 153-165 (177)
70 PF00301 Rubredoxin: Rubredoxi 62.5 6.9 0.00015 25.4 2.1 12 150-161 1-12 (47)
71 PF00205 TPP_enzyme_M: Thiamin 62.3 6.4 0.00014 30.9 2.4 25 28-52 1-25 (137)
72 COG0549 ArcC Carbamate kinase 62.2 13 0.00027 33.8 4.3 86 13-138 159-244 (312)
73 COG1675 TFA1 Transcription ini 62.1 6.9 0.00015 32.8 2.5 12 201-212 132-143 (176)
74 PF01155 HypA: Hydrogenase exp 62.1 2.9 6.3E-05 32.3 0.3 22 140-161 60-81 (113)
75 PRK03681 hypA hydrogenase nick 61.1 4.1 8.9E-05 31.6 1.0 18 143-160 63-80 (114)
76 TIGR00595 priA primosomal prot 60.9 23 0.00049 34.7 6.3 23 226-248 300-322 (505)
77 COG1773 Rubredoxin [Energy pro 60.8 10 0.00022 25.5 2.7 13 149-161 2-14 (55)
78 PRK03824 hypA hydrogenase nick 60.0 5.2 0.00011 32.0 1.5 14 149-162 69-82 (135)
79 PRK03958 tRNA 2'-O-methylase; 59.8 21 0.00045 30.0 5.0 54 211-266 78-132 (176)
80 TIGR03254 oxalate_oxc oxalyl-C 59.5 13 0.00028 36.7 4.4 70 197-271 231-304 (554)
81 PRK08197 threonine synthase; V 59.2 5.3 0.00012 37.7 1.6 13 149-161 6-18 (394)
82 PF03604 DNA_RNApol_7kD: DNA d 58.3 8.7 0.00019 22.8 1.8 11 201-211 17-27 (32)
83 PRK08322 acetolactate synthase 57.8 13 0.00028 36.5 4.0 44 229-272 255-300 (547)
84 PF14169 YdjO: Cold-inducible 55.8 8.6 0.00019 26.2 1.7 19 199-217 37-55 (59)
85 PF10571 UPF0547: Uncharacteri 54.7 8.8 0.00019 21.6 1.4 10 201-210 14-23 (26)
86 PLN02569 threonine synthase 54.6 7.2 0.00016 38.0 1.7 12 150-161 49-60 (484)
87 PRK09444 pntB pyridine nucleot 53.4 11 0.00024 36.3 2.6 45 213-257 355-402 (462)
88 KOG1185|consensus 53.1 12 0.00027 36.2 2.9 57 218-274 258-318 (571)
89 TIGR00746 arcC carbamate kinas 52.9 19 0.00042 32.9 4.1 47 10-62 154-200 (310)
90 PF07191 zinc-ribbons_6: zinc- 52.8 5.2 0.00011 28.3 0.3 12 201-212 30-41 (70)
91 COG1066 Sms Predicted ATP-depe 52.6 9.2 0.0002 36.4 2.0 12 149-160 6-17 (456)
92 PRK07979 acetolactate synthase 51.9 17 0.00037 36.0 3.9 44 229-272 265-311 (574)
93 PLN02470 acetolactate synthase 51.7 17 0.00036 36.2 3.8 42 230-271 273-317 (585)
94 PRK08527 acetolactate synthase 51.4 17 0.00036 36.0 3.7 43 229-271 262-307 (563)
95 TIGR00375 conserved hypothetic 51.3 8.2 0.00018 36.3 1.4 19 143-161 233-251 (374)
96 PF01396 zf-C4_Topoisom: Topoi 51.1 8.3 0.00018 23.8 1.0 11 203-213 3-13 (39)
97 PRK07525 sulfoacetaldehyde ace 51.0 18 0.0004 35.9 4.0 44 229-272 259-308 (588)
98 PRK07418 acetolactate synthase 50.9 17 0.00036 36.5 3.6 43 229-271 283-328 (616)
99 PRK08978 acetolactate synthase 50.7 17 0.00036 35.8 3.6 43 229-271 255-300 (548)
100 PRK09259 putative oxalyl-CoA d 50.6 24 0.00051 35.0 4.6 71 197-272 238-312 (569)
101 PF09986 DUF2225: Uncharacteri 50.2 4.2 9E-05 35.2 -0.7 13 150-162 5-17 (214)
102 PRK09124 pyruvate dehydrogenas 50.1 18 0.00039 35.8 3.7 40 230-271 259-298 (574)
103 PRK08979 acetolactate synthase 49.7 18 0.00039 35.8 3.6 44 229-272 265-311 (572)
104 PRK06882 acetolactate synthase 49.6 21 0.00045 35.3 4.1 43 229-271 265-310 (574)
105 COG0028 IlvB Thiamine pyrophos 49.5 18 0.00039 35.8 3.6 28 26-53 188-215 (550)
106 PRK05580 primosome assembly pr 49.4 35 0.00075 34.8 5.7 16 145-160 376-391 (679)
107 PRK12454 carbamate kinase-like 49.4 22 0.00048 32.7 3.8 42 13-60 160-201 (313)
108 PRK06965 acetolactate synthase 49.3 16 0.00035 36.3 3.3 43 229-271 280-326 (587)
109 PRK06154 hypothetical protein; 49.3 20 0.00044 35.5 3.9 43 229-271 273-316 (565)
110 TIGR01504 glyox_carbo_lig glyo 49.1 17 0.00037 36.2 3.4 43 229-271 262-307 (588)
111 PRK06457 pyruvate dehydrogenas 49.1 20 0.00044 35.2 3.9 42 229-272 252-293 (549)
112 COG1545 Predicted nucleic-acid 48.9 9.9 0.00021 30.6 1.4 15 146-160 25-39 (140)
113 PRK06546 pyruvate dehydrogenas 48.8 21 0.00044 35.5 3.9 41 229-272 258-298 (578)
114 PRK06725 acetolactate synthase 48.5 21 0.00045 35.4 3.9 44 229-272 273-319 (570)
115 PRK00945 acetyl-CoA decarbonyl 48.5 19 0.0004 30.1 3.0 25 27-51 23-47 (171)
116 COG3357 Predicted transcriptio 48.3 6.9 0.00015 29.0 0.4 12 150-161 58-69 (97)
117 COG1198 PriA Primosomal protei 48.1 46 0.00099 34.2 6.2 10 201-210 475-484 (730)
118 CHL00099 ilvB acetohydroxyacid 47.8 19 0.00042 35.7 3.6 41 230-270 277-320 (585)
119 PF08274 PhnA_Zn_Ribbon: PhnA 47.7 8 0.00017 22.6 0.5 10 201-210 2-11 (30)
120 PRK14714 DNA polymerase II lar 47.6 19 0.00041 38.9 3.5 21 138-160 657-677 (1337)
121 PF04606 Ogr_Delta: Ogr/Delta- 47.6 9.9 0.00021 24.4 1.0 10 203-212 1-10 (47)
122 PRK08611 pyruvate oxidase; Pro 47.5 23 0.0005 35.1 4.0 41 230-272 261-301 (576)
123 PRK12775 putative trifunctiona 47.5 13 0.00029 39.5 2.5 21 37-57 517-537 (1006)
124 PF01475 FUR: Ferric uptake re 47.1 19 0.00042 27.6 2.8 52 102-162 39-92 (120)
125 COG0777 AccD Acetyl-CoA carbox 46.7 15 0.00032 33.1 2.2 16 150-165 28-43 (294)
126 PF14419 SPOUT_MTase_2: AF2226 46.6 26 0.00055 28.9 3.4 35 18-56 100-134 (173)
127 PRK06048 acetolactate synthase 46.4 25 0.00053 34.8 4.0 43 229-271 266-311 (561)
128 PRK08155 acetolactate synthase 46.3 24 0.00053 34.8 4.0 44 229-272 270-316 (564)
129 TIGR00853 pts-lac PTS system, 46.2 9.2 0.0002 28.5 0.8 16 37-52 2-17 (95)
130 cd01121 Sms Sms (bacterial rad 46.1 9.2 0.0002 36.0 0.9 9 152-160 2-10 (372)
131 PRK09107 acetolactate synthase 46.1 26 0.00055 35.0 4.1 43 229-271 273-318 (595)
132 COG4161 ArtP ABC-type arginine 46.0 13 0.00028 31.2 1.7 66 210-275 157-240 (242)
133 PRK08327 acetolactate synthase 45.9 34 0.00074 33.9 4.9 30 22-51 204-233 (569)
134 TIGR02418 acolac_catab acetola 45.8 26 0.00055 34.4 4.0 44 229-272 255-300 (539)
135 PF10083 DUF2321: Uncharacteri 45.7 3.8 8.1E-05 33.5 -1.5 35 110-160 4-38 (158)
136 PRK07524 hypothetical protein; 45.7 19 0.00042 35.2 3.1 44 228-271 255-303 (535)
137 COG1933 Archaeal DNA polymeras 45.6 7.7 0.00017 34.0 0.3 12 201-212 183-194 (253)
138 COG3142 CutC Uncharacterized p 45.4 28 0.0006 30.5 3.6 29 24-52 154-183 (241)
139 PRK05638 threonine synthase; V 45.1 12 0.00026 35.9 1.5 10 151-160 2-11 (442)
140 PF14803 Nudix_N_2: Nudix N-te 44.9 8.5 0.00018 23.2 0.3 14 203-216 2-15 (34)
141 TIGR01206 lysW lysine biosynth 44.6 10 0.00022 25.4 0.7 13 200-212 21-33 (54)
142 PF02150 RNA_POL_M_15KD: RNA p 44.6 8.9 0.00019 23.2 0.4 12 203-214 3-14 (35)
143 PRK07282 acetolactate synthase 44.4 27 0.0006 34.5 4.0 43 229-271 269-314 (566)
144 PRK06466 acetolactate synthase 44.4 25 0.00053 34.9 3.7 44 229-272 265-311 (574)
145 PRK05978 hypothetical protein; 44.3 10 0.00022 30.9 0.8 17 201-217 52-68 (148)
146 PLN02573 pyruvate decarboxylas 44.2 22 0.00047 35.4 3.3 43 229-271 284-329 (578)
147 PRK07449 2-succinyl-5-enolpyru 43.5 39 0.00085 33.3 5.0 43 230-272 280-324 (568)
148 PRK07789 acetolactate synthase 43.3 26 0.00056 35.0 3.7 42 229-270 290-334 (612)
149 PRK06456 acetolactate synthase 43.2 28 0.0006 34.4 3.8 43 230-272 267-313 (572)
150 CHL00174 accD acetyl-CoA carbo 42.9 21 0.00045 32.5 2.6 16 150-165 38-53 (296)
151 TIGR03457 sulphoacet_xsc sulfo 42.8 27 0.00059 34.6 3.7 43 229-271 255-303 (579)
152 PRK07418 acetolactate synthase 42.8 43 0.00093 33.5 5.1 28 23-50 209-236 (616)
153 COG0028 IlvB Thiamine pyrophos 42.1 27 0.00058 34.6 3.5 32 16-47 68-99 (550)
154 PRK11823 DNA repair protein Ra 42.0 14 0.00031 35.5 1.6 11 150-160 7-17 (446)
155 PRK08617 acetolactate synthase 42.0 27 0.00058 34.4 3.5 44 230-273 262-307 (552)
156 PRK09590 celB cellobiose phosp 41.9 11 0.00024 28.7 0.6 14 39-52 2-15 (104)
157 PRK11269 glyoxylate carboligas 41.1 28 0.00061 34.6 3.5 43 229-271 263-308 (591)
158 PRK00762 hypA hydrogenase nick 41.1 18 0.00039 28.4 1.7 11 149-160 69-79 (124)
159 TIGR00173 menD 2-succinyl-5-en 41.0 46 0.001 31.7 4.9 42 230-272 269-312 (432)
160 PRK08327 acetolactate synthase 40.9 22 0.00048 35.2 2.8 42 230-271 273-315 (569)
161 PF09297 zf-NADH-PPase: NADH p 40.9 12 0.00025 21.9 0.5 14 201-214 3-16 (32)
162 PRK11788 tetratricopeptide rep 40.8 14 0.0003 34.0 1.2 10 201-210 368-377 (389)
163 PRK08329 threonine synthase; V 40.3 13 0.00028 34.5 0.9 11 151-161 2-12 (347)
164 PF11023 DUF2614: Protein of u 40.2 17 0.00037 28.1 1.4 13 203-215 87-99 (114)
165 PRK05654 acetyl-CoA carboxylas 40.2 23 0.0005 32.2 2.5 16 150-165 27-42 (292)
166 TIGR00118 acolac_lg acetolacta 40.2 30 0.00064 34.1 3.5 42 229-270 260-304 (558)
167 COG3961 Pyruvate decarboxylase 40.2 29 0.00063 34.0 3.2 43 18-60 189-243 (557)
168 TIGR00354 polC DNA polymerase, 40.0 17 0.00038 38.0 1.8 34 201-235 637-671 (1095)
169 TIGR00515 accD acetyl-CoA carb 40.0 26 0.00055 31.8 2.8 16 150-165 26-41 (285)
170 PRK14717 putative glycine/sarc 39.9 40 0.00087 25.5 3.3 35 30-64 8-53 (107)
171 PRK06112 acetolactate synthase 39.8 31 0.00068 34.1 3.6 42 229-270 277-321 (578)
172 PRK07710 acetolactate synthase 39.7 35 0.00077 33.7 4.0 43 229-271 274-319 (571)
173 PRK06276 acetolactate synthase 39.3 36 0.00079 33.8 4.0 43 229-271 262-307 (586)
174 TIGR00595 priA primosomal prot 38.9 17 0.00037 35.6 1.6 16 145-160 208-223 (505)
175 TIGR00416 sms DNA repair prote 38.8 16 0.00034 35.3 1.3 11 150-160 7-17 (454)
176 COG1110 Reverse gyrase [DNA re 38.7 32 0.0007 36.5 3.5 41 201-250 708-748 (1187)
177 cd05013 SIS_RpiR RpiR-like pro 38.5 17 0.00038 27.7 1.3 27 27-54 2-28 (139)
178 cd07153 Fur_like Ferric uptake 38.5 37 0.0008 25.6 3.1 51 102-161 32-84 (116)
179 COG1096 Predicted RNA-binding 38.4 11 0.00024 31.8 0.1 11 150-160 149-159 (188)
180 KOG4718|consensus 38.4 23 0.00049 30.6 2.0 11 201-211 216-226 (235)
181 COG1440 CelA Phosphotransferas 38.1 18 0.00038 27.5 1.2 14 39-52 2-15 (102)
182 TIGR00315 cdhB CO dehydrogenas 38.1 31 0.00068 28.5 2.8 23 28-50 17-39 (162)
183 PRK07524 hypothetical protein; 38.0 40 0.00087 33.0 4.1 28 23-50 186-213 (535)
184 PRK08199 thiamine pyrophosphat 38.0 36 0.00077 33.6 3.7 44 229-272 263-312 (557)
185 PRK12352 putative carbamate ki 37.8 36 0.00078 31.3 3.4 44 13-62 161-204 (316)
186 PRK05452 anaerobic nitric oxid 37.8 35 0.00077 33.2 3.5 21 141-161 416-436 (479)
187 PRK08266 hypothetical protein; 37.7 29 0.00063 34.0 3.0 41 230-271 257-300 (542)
188 TIGR02720 pyruv_oxi_spxB pyruv 37.2 33 0.00072 34.0 3.3 42 229-270 257-299 (575)
189 PRK07586 hypothetical protein; 37.2 43 0.00093 32.6 4.1 30 22-51 181-210 (514)
190 PF06906 DUF1272: Protein of u 36.9 18 0.00038 24.4 0.9 12 201-212 41-52 (57)
191 PRK14715 DNA polymerase II lar 36.7 28 0.0006 38.0 2.7 34 201-235 686-720 (1627)
192 PF02302 PTS_IIB: PTS system, 36.6 16 0.00035 26.2 0.8 13 40-52 1-13 (90)
193 PRK02935 hypothetical protein; 36.5 27 0.00059 26.7 1.9 17 201-217 86-102 (110)
194 cd05564 PTS_IIB_chitobiose_lic 36.4 17 0.00037 27.1 0.9 13 40-52 1-13 (96)
195 PRK10996 thioredoxin 2; Provis 36.4 1.6E+02 0.0034 23.2 6.6 62 201-268 22-94 (139)
196 TIGR02720 pyruv_oxi_spxB pyruv 36.3 44 0.00095 33.1 4.0 28 23-50 185-212 (575)
197 PRK14873 primosome assembly pr 35.9 18 0.00039 36.8 1.2 17 145-161 378-394 (665)
198 PRK08273 thiamine pyrophosphat 35.7 48 0.001 33.0 4.2 28 23-50 193-220 (597)
199 CHL00099 ilvB acetohydroxyacid 35.5 47 0.001 33.0 4.1 28 23-50 202-229 (585)
200 PRK12354 carbamate kinase; Rev 35.0 45 0.00097 30.6 3.5 44 13-62 150-193 (307)
201 PRK09411 carbamate kinase; Rev 34.8 43 0.00094 30.5 3.3 44 12-61 150-193 (297)
202 PRK09107 acetolactate synthase 34.6 53 0.0011 32.8 4.3 29 23-51 197-225 (595)
203 PRK13796 GTPase YqeH; Provisio 34.5 85 0.0018 29.3 5.4 43 201-244 34-78 (365)
204 COG1592 Rubrerythrin [Energy p 34.5 24 0.00053 29.3 1.6 11 150-160 134-144 (166)
205 PRK06154 hypothetical protein; 34.4 52 0.0011 32.6 4.2 31 22-52 198-228 (565)
206 PRK05858 hypothetical protein; 34.4 74 0.0016 31.2 5.3 30 22-51 187-216 (542)
207 TIGR01504 glyox_carbo_lig glyo 34.3 54 0.0012 32.7 4.3 29 23-51 187-215 (588)
208 COG0375 HybF Zn finger protein 34.3 27 0.00058 27.2 1.7 8 203-210 88-95 (115)
209 COG1885 Uncharacterized protei 34.2 26 0.00056 26.7 1.5 17 200-216 48-64 (115)
210 PRK07064 hypothetical protein; 34.1 46 0.00099 32.6 3.7 43 229-271 257-301 (544)
211 cd04235 AAK_CK AAK_CK: Carbama 34.0 54 0.0012 30.0 3.9 43 13-61 156-198 (308)
212 PF04475 DUF555: Protein of un 33.5 29 0.00063 26.2 1.7 19 201-219 47-65 (102)
213 COG3962 Acetolactate synthase 33.4 63 0.0014 31.5 4.3 40 229-268 288-331 (617)
214 COG2176 PolC DNA polymerase II 33.3 23 0.00051 38.1 1.6 24 24-47 714-737 (1444)
215 TIGR03457 sulphoacet_xsc sulfo 33.2 56 0.0012 32.4 4.2 29 23-51 181-209 (579)
216 TIGR03393 indolpyr_decarb indo 33.1 37 0.0008 33.4 2.9 42 229-270 265-309 (539)
217 TIGR02418 acolac_catab acetola 32.9 57 0.0012 32.0 4.2 29 23-51 180-208 (539)
218 PRK07282 acetolactate synthase 32.8 64 0.0014 31.9 4.5 29 23-51 195-223 (566)
219 COG1867 TRM1 N2,N2-dimethylgua 32.7 44 0.00095 31.4 3.1 32 201-232 257-289 (380)
220 KOG3035|consensus 32.5 29 0.00064 30.2 1.8 16 209-224 3-18 (245)
221 PRK09259 putative oxalyl-CoA d 32.4 56 0.0012 32.3 4.1 29 23-51 198-226 (569)
222 PRK07979 acetolactate synthase 32.3 51 0.0011 32.6 3.8 30 23-52 191-220 (574)
223 PRK06965 acetolactate synthase 32.1 64 0.0014 32.1 4.4 28 24-51 207-234 (587)
224 PRK07789 acetolactate synthase 32.0 62 0.0013 32.4 4.3 29 23-51 216-244 (612)
225 PRK11269 glyoxylate carboligas 32.0 61 0.0013 32.3 4.2 29 23-51 188-216 (591)
226 TIGR00173 menD 2-succinyl-5-en 31.9 62 0.0013 30.8 4.1 39 23-61 196-245 (432)
227 PRK06725 acetolactate synthase 31.9 63 0.0014 32.0 4.3 29 23-51 199-227 (570)
228 COG3809 Uncharacterized protei 31.9 21 0.00047 25.7 0.7 11 200-210 20-30 (88)
229 COG1198 PriA Primosomal protei 31.6 29 0.00064 35.6 1.9 14 197-210 458-471 (730)
230 PF09237 GAGA: GAGA factor; I 31.5 18 0.00039 24.0 0.3 16 197-212 20-35 (54)
231 KOG4166|consensus 31.3 60 0.0013 31.3 3.7 32 25-56 285-316 (675)
232 PRK10499 PTS system N,N'-diace 31.2 23 0.00049 27.0 0.9 14 39-52 4-17 (106)
233 PRK08611 pyruvate oxidase; Pro 31.2 85 0.0018 31.1 5.1 28 23-50 188-215 (576)
234 PRK10220 hypothetical protein; 31.0 23 0.00049 27.3 0.8 15 201-215 20-34 (111)
235 PRK07092 benzoylformate decarb 31.0 63 0.0014 31.6 4.1 28 23-50 191-218 (530)
236 PF10263 SprT-like: SprT-like 31.0 22 0.00048 28.5 0.8 15 147-161 120-134 (157)
237 COG4588 AcfC Accessory coloniz 30.9 28 0.0006 30.1 1.4 30 26-55 113-142 (252)
238 PRK06456 acetolactate synthase 30.8 64 0.0014 31.9 4.1 28 23-50 192-219 (572)
239 PF13453 zf-TFIIB: Transcripti 30.7 29 0.00063 21.4 1.1 13 203-215 1-13 (41)
240 PRK07064 hypothetical protein; 30.7 61 0.0013 31.7 4.0 28 23-50 188-215 (544)
241 TIGR03394 indol_phenyl_DC indo 30.6 49 0.0011 32.5 3.3 42 229-270 261-305 (535)
242 PRK14559 putative protein seri 30.6 36 0.00079 34.4 2.4 9 152-160 3-11 (645)
243 PRK08617 acetolactate synthase 30.5 63 0.0014 31.8 4.1 28 23-50 186-213 (552)
244 PRK03922 hypothetical protein; 30.5 33 0.00072 26.4 1.6 19 201-219 49-67 (113)
245 PF03119 DNA_ligase_ZBD: NAD-d 30.4 22 0.00047 20.3 0.5 10 203-212 1-10 (28)
246 PRK06546 pyruvate dehydrogenas 30.3 85 0.0018 31.2 4.9 28 23-50 186-213 (578)
247 COG5257 GCD11 Translation init 30.2 1.2E+02 0.0025 28.4 5.3 50 201-250 72-124 (415)
248 PRK06112 acetolactate synthase 30.1 67 0.0014 31.8 4.2 29 23-51 198-226 (578)
249 COG4306 Uncharacterized protei 29.9 15 0.00033 28.9 -0.3 25 122-159 13-37 (160)
250 cd04482 RPA2_OBF_like RPA2_OBF 29.9 25 0.00054 25.9 0.9 8 201-208 84-91 (91)
251 PRK08199 thiamine pyrophosphat 29.7 69 0.0015 31.6 4.2 28 23-50 189-216 (557)
252 COG1571 Predicted DNA-binding 29.6 24 0.00051 33.7 0.8 15 200-214 349-363 (421)
253 PRK08978 acetolactate synthase 29.6 69 0.0015 31.5 4.1 29 23-51 181-209 (548)
254 PLN02470 acetolactate synthase 29.5 65 0.0014 32.0 4.0 28 23-50 200-227 (585)
255 COG3962 Acetolactate synthase 29.4 69 0.0015 31.3 3.8 34 17-50 208-241 (617)
256 KOG2324|consensus 29.4 39 0.00085 31.7 2.2 20 141-160 218-237 (457)
257 COG1499 NMD3 NMD protein affec 29.2 54 0.0012 30.7 3.1 21 200-221 42-62 (355)
258 PF02233 PNTB: NAD(P) transhyd 29.2 16 0.00034 35.4 -0.4 44 213-256 356-402 (463)
259 PRK08979 acetolactate synthase 29.0 72 0.0016 31.6 4.2 27 24-50 192-218 (572)
260 PRK12286 rpmF 50S ribosomal pr 28.7 34 0.00074 23.1 1.3 17 201-217 27-43 (57)
261 COG2995 PqiA Uncharacterized p 28.7 34 0.00074 32.3 1.7 12 201-212 235-246 (418)
262 PRK08322 acetolactate synthase 28.7 74 0.0016 31.2 4.2 28 23-50 181-208 (547)
263 TIGR00118 acolac_lg acetolacta 28.6 93 0.002 30.6 4.9 28 24-51 187-214 (558)
264 PRK05580 primosome assembly pr 28.5 30 0.00065 35.2 1.4 22 139-160 379-400 (679)
265 COG0498 ThrC Threonine synthas 28.5 39 0.00084 32.3 2.1 16 201-216 21-36 (411)
266 PRK11572 copper homeostasis pr 28.3 73 0.0016 28.3 3.6 29 24-52 154-182 (248)
267 PF04810 zf-Sec23_Sec24: Sec23 28.3 27 0.0006 21.5 0.7 19 201-219 2-20 (40)
268 PF14952 zf-tcix: Putative tre 28.1 30 0.00064 22.1 0.8 10 200-209 10-19 (44)
269 PRK08527 acetolactate synthase 28.1 68 0.0015 31.7 3.8 30 23-52 188-217 (563)
270 PF13005 zf-IS66: zinc-finger 27.9 31 0.00068 21.7 0.9 11 202-212 3-13 (47)
271 PF05180 zf-DNL: DNL zinc fing 27.9 11 0.00023 26.4 -1.3 21 201-221 29-51 (66)
272 COG1282 PntB NAD/NADP transhyd 27.7 45 0.00097 31.4 2.2 44 213-256 357-403 (463)
273 COG0735 Fur Fe2+/Zn2+ uptake r 27.4 81 0.0018 25.3 3.5 55 101-162 51-105 (145)
274 PRK12474 hypothetical protein; 27.4 78 0.0017 30.9 4.1 29 23-51 186-214 (518)
275 PF07754 DUF1610: Domain of un 27.4 29 0.00062 19.2 0.6 8 201-208 16-23 (24)
276 PRK08155 acetolactate synthase 27.2 77 0.0017 31.3 4.0 29 23-51 196-224 (564)
277 PLN02573 pyruvate decarboxylas 27.1 49 0.0011 32.9 2.6 28 24-51 210-237 (578)
278 cd05005 SIS_PHI Hexulose-6-pho 26.9 72 0.0016 26.2 3.3 29 23-52 18-46 (179)
279 smart00661 RPOL9 RNA polymeras 26.7 31 0.00067 22.1 0.8 12 203-214 2-13 (52)
280 PF04216 FdhE: Protein involve 26.7 36 0.00079 30.6 1.5 22 140-161 183-208 (290)
281 TIGR02827 RNR_anaer_Bdell anae 26.7 82 0.0018 31.6 4.1 8 202-209 547-554 (586)
282 COG2051 RPS27A Ribosomal prote 26.5 23 0.00051 24.7 0.2 18 143-160 12-29 (67)
283 TIGR03597 GTPase_YqeH ribosome 26.4 1E+02 0.0023 28.6 4.5 42 201-243 28-70 (360)
284 TIGR03254 oxalate_oxc oxalyl-C 26.4 83 0.0018 31.0 4.1 29 23-51 191-219 (554)
285 PF09889 DUF2116: Uncharacteri 26.3 42 0.0009 22.9 1.4 17 201-217 3-19 (59)
286 TIGR03127 RuMP_HxlB 6-phospho 26.2 71 0.0015 26.1 3.1 28 23-51 15-42 (179)
287 TIGR00155 pqiA_fam integral me 26.1 33 0.00071 32.7 1.1 13 200-212 32-44 (403)
288 PF01286 XPA_N: XPA protein N- 25.8 42 0.00091 20.2 1.1 13 196-208 19-31 (34)
289 TIGR00686 phnA alkylphosphonat 25.7 31 0.00067 26.5 0.7 14 201-214 19-32 (109)
290 COG4049 Uncharacterized protei 25.5 20 0.00042 24.2 -0.3 13 200-212 16-28 (65)
291 COG4019 Uncharacterized protei 25.4 80 0.0017 25.1 2.9 24 25-48 23-46 (156)
292 PF06676 DUF1178: Protein of u 25.3 87 0.0019 25.5 3.3 21 200-220 31-57 (148)
293 COG1656 Uncharacterized conser 25.3 34 0.00073 28.4 0.9 13 201-213 97-109 (165)
294 PRK09462 fur ferric uptake reg 25.3 77 0.0017 25.3 3.0 52 102-162 49-102 (148)
295 TIGR03394 indol_phenyl_DC indo 25.2 59 0.0013 31.9 2.8 28 24-51 187-214 (535)
296 PF04194 PDCD2_C: Programmed c 25.1 35 0.00077 28.1 1.0 12 201-212 97-108 (164)
297 PRK11302 DNA-binding transcrip 25.0 67 0.0014 28.3 2.9 31 23-54 113-143 (284)
298 PF11576 DUF3236: Protein of u 24.7 69 0.0015 25.9 2.5 25 25-49 22-46 (154)
299 PRK10310 PTS system galactitol 24.7 33 0.00071 25.4 0.7 13 40-52 4-16 (94)
300 PRK09124 pyruvate dehydrogenas 24.7 1.2E+02 0.0025 30.1 4.7 28 23-50 186-213 (574)
301 PRK07710 acetolactate synthase 24.7 93 0.002 30.8 4.1 28 23-50 200-227 (571)
302 PRK07525 sulfoacetaldehyde ace 24.6 87 0.0019 31.1 3.9 28 23-50 185-212 (588)
303 PRK07092 benzoylformate decarb 24.6 92 0.002 30.5 4.0 43 228-270 264-310 (530)
304 PRK00448 polC DNA polymerase I 24.6 39 0.00085 37.5 1.5 12 203-214 935-946 (1437)
305 COG1056 NadR Nicotinamide mono 24.5 1E+02 0.0023 25.7 3.7 31 216-246 7-40 (172)
306 PRK08266 hypothetical protein; 24.4 94 0.002 30.4 4.0 28 23-50 190-217 (542)
307 PRK08271 anaerobic ribonucleos 24.4 84 0.0018 31.8 3.7 9 201-209 580-588 (623)
308 PRK15103 paraquat-inducible me 24.3 34 0.00074 32.7 0.9 12 201-212 30-41 (419)
309 PRK13265 glycine/sarcosine/bet 24.3 1E+02 0.0022 24.9 3.3 39 26-64 53-102 (154)
310 PRK06457 pyruvate dehydrogenas 24.2 96 0.0021 30.5 4.1 25 26-50 183-207 (549)
311 PRK13264 3-hydroxyanthranilate 24.2 66 0.0014 27.0 2.4 18 196-213 152-169 (177)
312 PF11590 DNAPolymera_Pol: DNA 24.2 62 0.0013 20.2 1.7 23 30-52 2-24 (41)
313 PRK06276 acetolactate synthase 24.1 89 0.0019 31.1 3.8 28 23-50 188-215 (586)
314 PRK11827 hypothetical protein; 24.1 31 0.00066 23.6 0.4 14 201-214 8-21 (60)
315 PF11290 DUF3090: Protein of u 24.1 40 0.00086 28.1 1.1 15 200-214 153-167 (171)
316 TIGR01031 rpmF_bact ribosomal 24.1 45 0.00097 22.3 1.2 17 201-217 26-42 (55)
317 PRK11557 putative DNA-binding 24.1 78 0.0017 27.9 3.1 29 24-53 114-142 (278)
318 COG2260 Predicted Zn-ribbon RN 24.0 37 0.00081 23.1 0.8 10 203-212 19-28 (59)
319 PF12760 Zn_Tnp_IS1595: Transp 24.0 47 0.001 21.0 1.2 10 201-210 18-27 (46)
320 PRK06048 acetolactate synthase 23.5 83 0.0018 31.0 3.5 29 23-51 192-220 (561)
321 PRK15482 transcriptional regul 23.4 79 0.0017 28.1 3.0 28 24-52 121-148 (285)
322 TIGR03037 anthran_nbaC 3-hydro 22.8 28 0.00061 28.7 0.0 39 123-161 80-125 (159)
323 COG2888 Predicted Zn-ribbon RN 22.5 73 0.0016 21.8 1.9 8 201-208 50-57 (61)
324 PRK06466 acetolactate synthase 22.5 97 0.0021 30.7 3.7 28 24-51 192-219 (574)
325 KOG2593|consensus 22.4 41 0.0009 32.1 1.0 17 148-164 126-142 (436)
326 PF04161 Arv1: Arv1-like famil 22.2 52 0.0011 28.2 1.5 12 200-211 23-34 (208)
327 cd04476 RPA1_DBD_C RPA1_DBD_C: 22.1 76 0.0016 25.8 2.5 20 141-160 24-44 (166)
328 TIGR03393 indolpyr_decarb indo 22.1 86 0.0019 30.8 3.2 25 26-50 193-217 (539)
329 COG2995 PqiA Uncharacterized p 22.1 50 0.0011 31.2 1.5 15 198-212 35-49 (418)
330 PF03833 PolC_DP2: DNA polymer 22.0 30 0.00065 35.9 0.0 15 147-161 652-666 (900)
331 PF12387 Peptidase_C74: Pestiv 22.0 62 0.0013 27.0 1.8 35 102-136 80-125 (200)
332 PF14353 CpXC: CpXC protein 21.9 45 0.00097 26.0 1.0 18 144-161 32-49 (128)
333 TIGR03847 conserved hypothetic 21.9 47 0.001 27.8 1.1 15 200-214 155-169 (177)
334 PF00731 AIRC: AIR carboxylase 21.6 74 0.0016 26.0 2.2 25 28-52 41-68 (150)
335 TIGR01162 purE phosphoribosyla 21.6 1.3E+02 0.0027 24.8 3.6 29 28-58 42-70 (156)
336 PRK06882 acetolactate synthase 21.5 1.2E+02 0.0026 30.0 4.2 28 24-51 192-219 (574)
337 COG3091 SprT Zn-dependent meta 21.5 53 0.0011 26.9 1.3 36 124-160 90-126 (156)
338 PF14319 Zn_Tnp_IS91: Transpos 21.4 71 0.0015 24.5 2.0 13 148-160 40-52 (111)
339 TIGR01405 polC_Gram_pos DNA po 21.3 48 0.0011 36.1 1.4 22 26-47 485-506 (1213)
340 PRK04136 rpl40e 50S ribosomal 21.1 56 0.0012 21.3 1.1 13 148-160 12-24 (48)
341 TIGR02321 Pphn_pyruv_hyd phosp 21.1 56 0.0012 29.6 1.6 19 40-58 37-55 (290)
342 KOG4126|consensus 20.9 1.4E+02 0.003 29.3 4.2 26 27-52 54-86 (529)
343 PRK07586 hypothetical protein; 20.9 99 0.0022 30.0 3.4 20 228-247 254-273 (514)
344 PRK09401 reverse gyrase; Revie 20.1 89 0.0019 34.1 3.0 36 202-246 693-728 (1176)
345 PRK14890 putative Zn-ribbon RN 20.0 39 0.00084 23.0 0.2 14 146-159 21-34 (59)
No 1
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=6.8e-61 Score=425.31 Aligned_cols=241 Identities=49% Similarity=0.876 Sum_probs=213.5
Q ss_pred HHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHH
Q psy16867 31 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHY 110 (275)
Q Consensus 31 l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~ 110 (275)
|+++|+++++|||+||||||++|||||||+.+ |+|.+. +.++++..|..+|+.+|.||.+.+..+..+.+++||.+|+
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~-Glw~~~-~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~ 78 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEG-GLYSRT-FRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHR 78 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcC-CcccCC-CCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHH
Confidence 46789999999999999999999999999998 999984 3567889999999999999987776555567899999999
Q ss_pred HHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcc
Q psy16867 111 ALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVE 190 (275)
Q Consensus 111 ~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~ 190 (275)
+|++|++.|++.+||||||||||++||.++|+|+|||+.+++|+.|++.+.+..+...+...+|.|........|+++..
T Consensus 79 ~la~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
T cd01409 79 ALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVD 158 (260)
T ss_pred HHHHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999888888888888999987766677777776
Q ss_pred cchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---Hhhh--ccCcEEEEec
Q psy16867 191 MSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---LVKE--HAKGYLGKGN 265 (275)
Q Consensus 191 ~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~~r~--~~~~~~v~iN 265 (275)
++.+......+|+||.|||.|||+||||||.+|.+.++.+.+++.+||++||||||+.|++ ++++ ..++.+|.||
T Consensus 159 ~~~~~~~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN 238 (260)
T cd01409 159 LEDEQVAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVN 238 (260)
T ss_pred cchhhcccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEc
Confidence 6555555556899999999999999999999999999999999999999999999999974 2221 1379999999
Q ss_pred CCCCCCCC
Q psy16867 266 VQTTPFSF 273 (275)
Q Consensus 266 ~~~~~~~~ 273 (275)
+++|+++.
T Consensus 239 ~~~t~~d~ 246 (260)
T cd01409 239 IGPTRADH 246 (260)
T ss_pred CCCCCCCc
Confidence 99999985
No 2
>KOG2683|consensus
Probab=100.00 E-value=6e-61 Score=404.57 Aligned_cols=271 Identities=49% Similarity=0.847 Sum_probs=252.6
Q ss_pred CCCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhC
Q psy16867 3 GKVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKS 82 (275)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~ 82 (275)
-+.||. -.+-+.++|...++-+++|++|..+|..+++++|+||||||++|||||||+++.|+|.+....++..++|.++
T Consensus 11 s~~p~s-~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~hqdf~rS 89 (305)
T KOG2683|consen 11 SKAPPS-FLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQHQDFVRS 89 (305)
T ss_pred CCCCch-hhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchHHHHhhh
Confidence 356666 4455679999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccch
Q psy16867 83 RRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~ 162 (275)
...+++||+|.+..|.++..++||++|++|+.|++.++.+++||||+|+||.+||++.+.|+||+.....|..|++...+
T Consensus 90 s~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C~y~~~R 169 (305)
T KOG2683|consen 90 SRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSCGYIEPR 169 (305)
T ss_pred hHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEecccCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCChhhhhhcc---CCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCE
Q psy16867 163 HKFQKILEDLNPDLMIESQE---MRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDG 239 (275)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~---~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dl 239 (275)
..+++++..+||.|++...+ +.||+|++++.+..+.+.+|.|++|||.|||+|+||||+++.+..+...+.+++||-
T Consensus 170 ~~~Qdrl~~~NP~fke~~~~~~~~~pDgDv~lpl~~e~gF~IPeC~~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg 249 (305)
T KOG2683|consen 170 QTFQDRLKYLNPGFKEAIVSPGHQRPDGDVELPLEFEEGFQIPECEKCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDG 249 (305)
T ss_pred HHHHHHHHhcCcchhhhccCccccCCCCCeecchhhhhcccCCcccccCCccCCceEEecCCCChHHHHHHHHHHhccCc
Confidence 99999999999999988766 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCccchH---Hhhh--ccCcEEEEecCCCCCCCCC
Q psy16867 240 VLVLGSSLTVPI---LVKE--HAKGYLGKGNVQTTPFSFL 274 (275)
Q Consensus 240 iLvlGts~~v~~---~~r~--~~~~~~v~iN~~~~~~~~~ 274 (275)
+|++|||+.|.. ++++ ..+..+..||..+|.-|+.
T Consensus 250 ~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~ 289 (305)
T KOG2683|consen 250 FLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDM 289 (305)
T ss_pred eEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhe
Confidence 999999999972 4432 2257788899999987653
No 3
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=4.5e-58 Score=412.77 Aligned_cols=249 Identities=41% Similarity=0.766 Sum_probs=213.1
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCC
Q psy16867 22 PVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFS 101 (275)
Q Consensus 22 ~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (275)
..++++|+.++++|+++++|||+||||||++|||||||+.+ |+|.+. .++.+..|..++..+|.||.+.+..|..+.
T Consensus 3 ~~~~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~-G~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (285)
T PRK05333 3 DADPAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRN-GQWKRS--PPITYQAFMGSDAARRRYWARSMVGWPVFG 79 (285)
T ss_pred cccHHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCC-CccccC--CcccHHHHhcCchhhHHHHHHHHhhchhcc
Confidence 46788999999999999999999999999999999999998 999874 457788899999888999988776666667
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhc
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQ 181 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~ 181 (275)
+++||.+|++|++|++.|++++||||||||||++||.++|+|+||++..++|++|++.+.+++....+.+.+|.|.....
T Consensus 80 ~~~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (285)
T PRK05333 80 RAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA 159 (285)
T ss_pred cCCCCHHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc
Confidence 89999999999999999999999999999999999999999999999999999999998887777777777777776543
Q ss_pred cCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---H---hhh
Q psy16867 182 EMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---L---VKE 255 (275)
Q Consensus 182 ~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~---~r~ 255 (275)
...++++............+|+||.|||.|||+||||||.++++.++++.++++++|++|+||||+.|++ + +++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~ 239 (285)
T PRK05333 160 APAPDGDADLEWAAFDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQ 239 (285)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHH
Confidence 3334444333222223345899999999999999999999999999999999999999999999999963 2 333
Q ss_pred ccCcEEEEecCCCCCCCCC
Q psy16867 256 HAKGYLGKGNVQTTPFSFL 274 (275)
Q Consensus 256 ~~~~~~v~iN~~~~~~~~~ 274 (275)
. ++++|.||+++++++..
T Consensus 240 ~-g~~~i~IN~~~t~~~~~ 257 (285)
T PRK05333 240 Q-GKPIAALNLGRTRADPL 257 (285)
T ss_pred C-CCeEEEECCCCCCCCcc
Confidence 3 57999999999999864
No 4
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.1e-55 Score=388.85 Aligned_cols=213 Identities=31% Similarity=0.535 Sum_probs=186.5
Q ss_pred HHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHH
Q psy16867 29 NKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNAN 108 (275)
Q Consensus 29 ~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 108 (275)
+.++++|++|++|||+||||||++|||||||+.+ |+|+++.....+...|..+|+.+|+||.+... .+.+++||.+
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~-gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~~---~~~~~~Pn~~ 77 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQ-GIYKKYPQNVFDIDFFYSHPEEFYRFAKEGIF---PMLEAKPNLA 77 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCC-CCccCCcccccCHHHHHhCHHHHHHHHHHhhc---ccccCCCCHH
Confidence 5789999999999999999999999999999998 99998654445678888999999999976542 3458999999
Q ss_pred HHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCC
Q psy16867 109 HYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGD 188 (275)
Q Consensus 109 h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d 188 (275)
|++|++|++.|+..+||||||||||++||.++|+|+||++.+++|+.|++.+...+....+
T Consensus 78 H~ala~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~------------------- 138 (244)
T PRK14138 78 HVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKL------------------- 138 (244)
T ss_pred HHHHHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999988665443211
Q ss_pred cccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH------hhhccCcEEE
Q psy16867 189 VEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL------VKEHAKGYLG 262 (275)
Q Consensus 189 ~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~------~r~~~~~~~v 262 (275)
....+|+||.|||.|||+||||||.+|+..++.+.+++++||++|+||||+.|.+. ++. .+++++
T Consensus 139 --------~~~~~p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~-~g~~~i 209 (244)
T PRK14138 139 --------EKSDVPRCDDCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVR-SGGKLV 209 (244)
T ss_pred --------hcCCCCCCCCCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHH-cCCeEE
Confidence 12248999999999999999999999999999999999999999999999999742 333 368999
Q ss_pred EecCCCCCCCC
Q psy16867 263 KGNVQTTPFSF 273 (275)
Q Consensus 263 ~iN~~~~~~~~ 273 (275)
.||+++|+++.
T Consensus 210 ~iN~~~t~~d~ 220 (244)
T PRK14138 210 IVNLGETPLDD 220 (244)
T ss_pred EEcCCCCCCCc
Confidence 99999999986
No 5
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=5.5e-55 Score=388.48 Aligned_cols=221 Identities=28% Similarity=0.498 Sum_probs=183.2
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCC-CCChHHHHhChHHHHHHHHHhhcCCCCCC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFS 101 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (275)
+....|+.++++|+++++|||+||||||++|||||||+++.|+|.++... ..++..|..+|+.+|.||..... ..
T Consensus 13 ~~~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~~~~~~t~~~f~~~p~~~~~~~~~~~~----~~ 88 (271)
T PTZ00409 13 TKSITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEVIRDISS----DY 88 (271)
T ss_pred cccccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCCHHHhccHHHHHHChHHHHHHHHHhhh----cc
Confidence 33456789999999999999999999999999999999733999975432 23567788999999988865432 24
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhc
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQ 181 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~ 181 (275)
+++||.+|++|++|++.|++.+||||||||||++||.++|+|+||++..++|+.|++.++.+.... ..++.
T Consensus 89 ~a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~C~~~~~~~~~~~---~~~~~------ 159 (271)
T PTZ00409 89 EIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKIML---QKTSH------ 159 (271)
T ss_pred cCCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCCCCCCcccCHHHH---hhhhh------
Confidence 789999999999999999999999999999999999999999999999999999998875432110 00000
Q ss_pred cCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH------hhh
Q psy16867 182 EMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL------VKE 255 (275)
Q Consensus 182 ~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~------~r~ 255 (275)
.....+|+|+ |||.|||+||||||.+|++.++.+.+++++||++||||||+.|.+. +++
T Consensus 160 --------------~~~~~~P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~ 224 (271)
T PTZ00409 160 --------------FMHQLPPECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHR 224 (271)
T ss_pred --------------hccCCCCCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHH
Confidence 0011369999 9999999999999999999999999999999999999999999843 333
Q ss_pred ccCcEEEEecCCCCCCC
Q psy16867 256 HAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 256 ~~~~~~v~iN~~~~~~~ 272 (275)
. ++.+|.||+++|+++
T Consensus 225 ~-g~~vi~IN~~~t~~~ 240 (271)
T PTZ00409 225 K-KKKIVEVNISKTYIT 240 (271)
T ss_pred c-CCCEEEECCCCCCCC
Confidence 3 689999999999986
No 6
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=3.9e-55 Score=380.63 Aligned_cols=207 Identities=37% Similarity=0.633 Sum_probs=178.5
Q ss_pred HHhCCcEEEEeCccccccCCCCCcccCCCccccccCCC-CCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHHHHH
Q psy16867 35 IEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALK 113 (275)
Q Consensus 35 l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~~L~ 113 (275)
|++|++|||+||||||++|||||||+.+ |+|+++... ..+...|..+|+.+|+||.+.+. .+.+++||.+|++|+
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~-glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~---~~~~a~Pn~~H~~La 76 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPD-GLWKKYDPEEVASIDYFYRNPEEFWRFYKEIIL---GLLEAQPNKAHYFLA 76 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcC-CCcCCCCHHHhccHHHHhHCHHHHHHHHHHHhc---ccCCCCCCHHHHHHH
Confidence 4578999999999999999999999998 999986533 34667788999999999988764 245899999999999
Q ss_pred HHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccch
Q psy16867 114 QMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 193 (275)
Q Consensus 114 ~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~ 193 (275)
+|++.+++++|||||||+||++||.++|+|+||++..++|+.|++.+...++.
T Consensus 77 ~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~C~~~~~~~~~~--------------------------- 129 (222)
T cd01413 77 ELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVK--------------------------- 129 (222)
T ss_pred HHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECCCCCCcchhHHH---------------------------
Confidence 99998999999999999999999999999999999999999999887544321
Q ss_pred hhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHHh---hh--ccCcEEEEecCCC
Q psy16867 194 ETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILV---KE--HAKGYLGKGNVQT 268 (275)
Q Consensus 194 ~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~~---r~--~~~~~~v~iN~~~ 268 (275)
.+....+|+||.|||.|||+||||||.+|++.++++.+++.+||++||||||++|++.. +. ..++.+|.||+++
T Consensus 130 -~~~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~ 208 (222)
T cd01413 130 -YAKKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADE 208 (222)
T ss_pred -HhccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCC
Confidence 01112479999999999999999999999999999999999999999999999998432 21 2368999999999
Q ss_pred CCCCC
Q psy16867 269 TPFSF 273 (275)
Q Consensus 269 ~~~~~ 273 (275)
++++.
T Consensus 209 ~~~~~ 213 (222)
T cd01413 209 TPFDY 213 (222)
T ss_pred CCCCc
Confidence 99886
No 7
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=5.5e-55 Score=382.07 Aligned_cols=216 Identities=35% Similarity=0.610 Sum_probs=186.5
Q ss_pred HHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCcccc-ccCCC-CCChHHHHhChHHHHHHHHHhhcCCCCCCCCCC
Q psy16867 28 INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYA-RSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQP 105 (275)
Q Consensus 28 l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 105 (275)
++.++++|++|++|||+||||||++|||||||+.+ |+|. ++... .++...|.++|+.+|.|+.+... ....++|
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~-Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~~---~~~~a~P 77 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKD-GLWSDKYDPEDLASPSGFRRDPELVWDFYSERLR---LLYLAQP 77 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCC-CCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHHH---hhhcCCC
Confidence 67899999999999999999999999999999988 9999 54332 45778888999999999987663 3345899
Q ss_pred CHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCC
Q psy16867 106 NANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRP 185 (275)
Q Consensus 106 ~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 185 (275)
|.+|++|++|++.+++++|||||||+||++||+++|+||||++...+|+.|+..++..+..+.
T Consensus 78 n~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~----------------- 140 (250)
T COG0846 78 NKAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKF----------------- 140 (250)
T ss_pred CHHHHHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeCCCcCccchhhhhhh-----------------
Confidence 999999999999999999999999999999999999999999999999999998864432110
Q ss_pred CCCcccchhhhccCCCCCCCCCCC-eecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHHhh-----hccCc
Q psy16867 186 DGDVEMSEETISKFHVPQCPHCHG-DLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVK-----EHAKG 259 (275)
Q Consensus 186 ~~d~~~~~~~~~~~~~P~Cp~Cgg-~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~~r-----~~~~~ 259 (275)
.+...+|+||+||+ .|||+||||||.+|...++.+.+.++.+|++|++|||+.|++... ...++
T Consensus 141 ----------~~~~~~p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~ 210 (250)
T COG0846 141 ----------IEDGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGA 210 (250)
T ss_pred ----------cccCCCCcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCC
Confidence 11124899999999 999999999999999999999999999999999999999985322 22379
Q ss_pred EEEEecCCCCCCCCC
Q psy16867 260 YLGKGNVQTTPFSFL 274 (275)
Q Consensus 260 ~~v~iN~~~~~~~~~ 274 (275)
.++.||+++++++..
T Consensus 211 ~~i~iN~~~~~~~~~ 225 (250)
T COG0846 211 KVIEINLEPTRLDPI 225 (250)
T ss_pred EEEEECCCcccCcch
Confidence 999999999998763
No 8
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=3.8e-54 Score=379.30 Aligned_cols=212 Identities=35% Similarity=0.617 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCC-CCChHHHHhChHHHHHHHHHhhcCCCCCCCCCC
Q psy16867 27 DINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQP 105 (275)
Q Consensus 27 ~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 105 (275)
+|++++++|++|++|||+||||||++|||||||+.+ |+|.++... ..+...|..+|+.+|+||.+... .+.+++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~-gl~~~~~~~~~~~~~~~~~~p~~~w~f~~~~~~---~~~~~~P 77 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSAN-GLWEEHRPEDVASPEGFARDPELVWKFYNERRR---QLLDAKP 77 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCC-cCccCCCHHHhccHHHHhhCHHHHHHHHHHHHH---HhccCCC
Confidence 578999999999999999999999999999999987 999875433 33566777899999999987653 2348999
Q ss_pred CHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCC
Q psy16867 106 NANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRP 185 (275)
Q Consensus 106 ~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 185 (275)
|.+|++|++|.+.|++++|||||||+||++||.++|+|+||++..++|+.|++.+..+...
T Consensus 78 n~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~------------------- 138 (242)
T PRK00481 78 NAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLDEYL------------------- 138 (242)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCCCCCCcChhhhc-------------------
Confidence 9999999999988999999999999999999999999999999999999998876433210
Q ss_pred CCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---Hhh--hccCcE
Q psy16867 186 DGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---LVK--EHAKGY 260 (275)
Q Consensus 186 ~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~~r--~~~~~~ 260 (275)
...+|+||.|||.|||+||||||.+++..++.+.++++++|++||||||+.|++ +++ ...++.
T Consensus 139 ------------~~~~p~C~~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~ 206 (242)
T PRK00481 139 ------------KPEPPRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAK 206 (242)
T ss_pred ------------cCCCCCCCCCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCe
Confidence 113788999999999999999999999889999999999999999999999963 332 224799
Q ss_pred EEEecCCCCCCCC
Q psy16867 261 LGKGNVQTTPFSF 273 (275)
Q Consensus 261 ~v~iN~~~~~~~~ 273 (275)
+|+||+++++++.
T Consensus 207 ~i~iN~~~~~~~~ 219 (242)
T PRK00481 207 TVEINLEPTPLDS 219 (242)
T ss_pred EEEECCCCCCCCC
Confidence 9999999999875
No 9
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=7.6e-54 Score=373.13 Aligned_cols=204 Identities=31% Similarity=0.550 Sum_probs=175.9
Q ss_pred HHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccC----CCCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCC
Q psy16867 31 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSD----KRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPN 106 (275)
Q Consensus 31 l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 106 (275)
|+++|++|++|||+||||||++|||||||+.+ |+|+... ....+...|..+|+.+|+||.+.. .+.+++||
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~-G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~Pn 75 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKN-GLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENL----YFPDAKPN 75 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCC-cCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHh----hCCCCCCC
Confidence 46788999999999999999999999999998 9998742 122356777899999999998753 23588999
Q ss_pred HHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCC
Q psy16867 107 ANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPD 186 (275)
Q Consensus 107 ~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 186 (275)
.+|++|++|++.+ +++|||||+|+||++||.++|+|+||++..++|+.|+..+.+.+.
T Consensus 76 ~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~--------------------- 133 (225)
T cd01411 76 IIHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEEY--------------------- 133 (225)
T ss_pred HHHHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhhc---------------------
Confidence 9999999999877 899999999999999999999999999999999999876542210
Q ss_pred CCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---Hhhhc-cCcEEE
Q psy16867 187 GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---LVKEH-AKGYLG 262 (275)
Q Consensus 187 ~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~~r~~-~~~~~v 262 (275)
..+|+||+|||.|||+||||||.++.+.++.+.+.++++|++|+||||+.|.+ +++.. .++.+|
T Consensus 134 ------------~~~p~C~~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i 201 (225)
T cd01411 134 ------------LKSPYHAKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLI 201 (225)
T ss_pred ------------CCCCCCCCCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEE
Confidence 12699999999999999999999999999999999999999999999999963 33332 379999
Q ss_pred EecCCCCCCCC
Q psy16867 263 KGNVQTTPFSF 273 (275)
Q Consensus 263 ~iN~~~~~~~~ 273 (275)
.||+++++++.
T Consensus 202 ~iN~~~~~~~~ 212 (225)
T cd01411 202 AINKEPTQLDS 212 (225)
T ss_pred EECCCCCCCCc
Confidence 99999999885
No 10
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=1.5e-52 Score=363.73 Aligned_cols=202 Identities=42% Similarity=0.681 Sum_probs=174.7
Q ss_pred CcEEEEeCccccccCCCCCcccCCCccccccCCCC--CChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHH
Q psy16867 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP--VQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQME 116 (275)
Q Consensus 39 ~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~~L~~L~ 116 (275)
++|||+||||||++|||||||+.+ |+|+...... .+...|..+|+.+|.||.+.+. +.+++||.+|++|++|+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~-G~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~Pn~~H~~L~~L~ 75 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPG-GLWARLDPEELAFSPEAFRRDPELFWGFYRERRY----PLNAQPNPAHRALAELE 75 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCC-CccccCChhhccCCHHHHHHCHHHHHHHHHHhhh----hccCCCCHHHHHHHHHH
Confidence 579999999999999999999998 9999865433 2677788999999999987753 45899999999999999
Q ss_pred HcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhh
Q psy16867 117 DNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETI 196 (275)
Q Consensus 117 ~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~ 196 (275)
+.+++++||||||||||++||.++|+|+||++..++|+.|++.++.+... ..+
T Consensus 76 ~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~---------------------------~~~ 128 (218)
T cd01407 76 RKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQ---------------------------ADI 128 (218)
T ss_pred hcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHh---------------------------Hhh
Confidence 98999999999999999999999999999999999999999987654321 011
Q ss_pred ccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---Hhhhcc--CcEEEEecCCCCCC
Q psy16867 197 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---LVKEHA--KGYLGKGNVQTTPF 271 (275)
Q Consensus 197 ~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~~r~~~--~~~~v~iN~~~~~~ 271 (275)
....+|+||.||+.|||+||||||.+++. ++++.+++.++|++||||||+.|++ +++... ++.++.||+++++.
T Consensus 129 ~~~~~p~C~~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~ 207 (218)
T cd01407 129 DREEVPRCPKCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPA 207 (218)
T ss_pred ccCCCCcCCCCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCC
Confidence 22348999999999999999999999998 9999999999999999999999984 333332 79999999999998
Q ss_pred CC
Q psy16867 272 SF 273 (275)
Q Consensus 272 ~~ 273 (275)
+.
T Consensus 208 ~~ 209 (218)
T cd01407 208 DR 209 (218)
T ss_pred Cc
Confidence 74
No 11
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=5.5e-52 Score=363.52 Aligned_cols=202 Identities=34% Similarity=0.542 Sum_probs=166.8
Q ss_pred CcEEEEeCccccccCCCCCcccCCCccccccCC-------CCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHHH
Q psy16867 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDK-------RPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYA 111 (275)
Q Consensus 39 ~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~~ 111 (275)
++|||+||||||++|||||||+.+.|+|.+... +..++..|.++|..+|.|+.... . .+++||.+|++
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~---~--~~a~Pn~~H~~ 75 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKELY---P--GQFKPSVAHYF 75 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHHh---c--CcCCCCHHHHH
Confidence 579999999999999999999985599987432 12456678889887766555432 1 48999999999
Q ss_pred HHHHHHcCCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCc
Q psy16867 112 LKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDV 189 (275)
Q Consensus 112 L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~ 189 (275)
|++|.+.|++++|||||||+||++||. ++|+|+||++..++|+.|++.+..+.+...
T Consensus 76 la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~--------------------- 134 (235)
T cd01408 76 IKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMRED--------------------- 134 (235)
T ss_pred HHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHH---------------------
Confidence 999999999999999999999999995 599999999999999999998765433211
Q ss_pred ccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH---hhhc-cCcEEEEec
Q psy16867 190 EMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL---VKEH-AKGYLGKGN 265 (275)
Q Consensus 190 ~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~---~r~~-~~~~~v~iN 265 (275)
+....+|+||.|||.|||+||||||.+|+..++.+.+.+++||++||||||+.|++. ++.. .++.+|.||
T Consensus 135 ------~~~~~~p~C~~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN 208 (235)
T cd01408 135 ------IFNQEVPKCPRCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLIN 208 (235)
T ss_pred ------HhCCCCccCCCCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEe
Confidence 111237999999999999999999999998888888999999999999999999842 2111 258899999
Q ss_pred CCCCCCC
Q psy16867 266 VQTTPFS 272 (275)
Q Consensus 266 ~~~~~~~ 272 (275)
+++++++
T Consensus 209 ~~~~~~~ 215 (235)
T cd01408 209 REPVGHL 215 (235)
T ss_pred CCCCCCC
Confidence 9999886
No 12
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1e-51 Score=355.04 Aligned_cols=191 Identities=35% Similarity=0.515 Sum_probs=158.0
Q ss_pred CcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHc
Q psy16867 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDN 118 (275)
Q Consensus 39 ~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~~L~~L~~~ 118 (275)
++|||+||||||++|||||||+.+ |+|.+... +..++...|+| .+++||.+|++|++|++.
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~-Glw~~~~~-------~~~~~~~~~~~-----------~~~~Pn~~H~~La~l~~~ 61 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPN-GVWTLLPE-------DKGRRRFSWRF-----------RRAEPTLTHMALVELERA 61 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcC-CCcccCCc-------cccChHHHhhh-----------hcCCCCHHHHHHHHHHHC
Confidence 579999999999999999999998 99987432 23333333322 258999999999999998
Q ss_pred CCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhh
Q psy16867 119 EKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETI 196 (275)
Q Consensus 119 ~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~ 196 (275)
+++.+|||||||+||++||. ++|+|+||++.+++|+.|++.+..++....+ .
T Consensus 62 g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~--------------------------~ 115 (206)
T cd01410 62 GLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETR--------------------------G 115 (206)
T ss_pred CCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHh--------------------------h
Confidence 99999999999999999994 6899999999999999999877544332111 1
Q ss_pred ccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH---hh--hccCcEEEEecCCCCCC
Q psy16867 197 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL---VK--EHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 197 ~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~---~r--~~~~~~~v~iN~~~~~~ 271 (275)
....+|+||.|||.|||+||||||.+|...++.+.+.+.+||++|+||||+.|.+. ++ ...++.++.||++++++
T Consensus 116 ~~~~~p~C~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~ 195 (206)
T cd01410 116 DKETGRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPK 195 (206)
T ss_pred cCCCCCcCCCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCC
Confidence 12247999999999999999999999999999999999999999999999999843 22 12368999999999998
Q ss_pred CCC
Q psy16867 272 SFL 274 (275)
Q Consensus 272 ~~~ 274 (275)
+..
T Consensus 196 d~~ 198 (206)
T cd01410 196 DKL 198 (206)
T ss_pred Ccc
Confidence 853
No 13
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=1.8e-51 Score=358.56 Aligned_cols=200 Identities=35% Similarity=0.600 Sum_probs=171.9
Q ss_pred CcEEEEeCccccccCCCCCcccCCCccccccCCCC-CChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHH
Q psy16867 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-VQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED 117 (275)
Q Consensus 39 ~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~~L~~L~~ 117 (275)
++|||+||||||++|||||||+.+ |+|.++.... .+...|..+|+.+|+||.+... .+.+++||.+|++|++|++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~-g~~~~~~~~~~~~~~~f~~~p~~~w~f~~~~~~---~~~~~~Pn~~H~~L~~L~~ 76 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDAD-GLWARFDPEELATPEAFARDPELVWEFYNWRRR---KALRAQPNPAHLALAELER 76 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcC-CCcCCCChhhcCCHHHHHHCHHHHHHHHHHHHH---HccccCCCHHHHHHHHHHh
Confidence 479999999999999999999998 9998865433 3667788999999999987653 2358899999999999999
Q ss_pred cCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhc
Q psy16867 118 NEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETIS 197 (275)
Q Consensus 118 ~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~ 197 (275)
.+++++||||||||||++||.++|+|+||++..++|+.|++.++... .+.
T Consensus 77 ~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~------------------------------~~~ 126 (224)
T cd01412 77 RLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNE------------------------------EIP 126 (224)
T ss_pred cCCCeEEEEccchHhhHHhCCCceEeeCCCcCccccCCCCCCCCcch------------------------------hhh
Confidence 88899999999999999999999999999999999999998764321 111
Q ss_pred cCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH---hh--hccCcEEEEecCCCCCCC
Q psy16867 198 KFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL---VK--EHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 198 ~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~---~r--~~~~~~~v~iN~~~~~~~ 272 (275)
...+|+||.|||.|||+|+||||.+++ .++.+.++++++|++||||||+.|.+. ++ ...++++++||+++++++
T Consensus 127 ~~~~p~C~~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~ 205 (224)
T cd01412 127 EEELPRCPKCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS 205 (224)
T ss_pred ccCCCCCCCCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC
Confidence 234899999999999999999999998 888999999999999999999999742 32 224799999999999886
Q ss_pred C
Q psy16867 273 F 273 (275)
Q Consensus 273 ~ 273 (275)
.
T Consensus 206 ~ 206 (224)
T cd01412 206 P 206 (224)
T ss_pred C
Confidence 4
No 14
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=3.1e-51 Score=359.36 Aligned_cols=202 Identities=28% Similarity=0.434 Sum_probs=165.7
Q ss_pred HhCCcEEEEeCccccccCCCCCcccCCCccccccCC-CCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHH
Q psy16867 36 EKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQ 114 (275)
Q Consensus 36 ~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~~L~~ 114 (275)
++|++|||+||||||++|||||||+.+ |+|+++.. ...+...|..+|..+|+||...... -...+++||.+|++|++
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~-Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~-~~~~~~~Pn~~H~~L~~ 79 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGN-GLWENHRVEDVATPDAFLRNPALVQRFYNERRRA-LLSSSVKPNKAHFALAK 79 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCC-CCCCCCChhhcCCHHHHHhCHHHHHHHHHHHHHH-hccCCCCCCHHHHHHHH
Confidence 358999999999999999999999998 99987543 3356788899999999999754321 11257899999999999
Q ss_pred HHHc--CCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccc
Q psy16867 115 MEDN--EKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMS 192 (275)
Q Consensus 115 L~~~--~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~ 192 (275)
|++. ++.++|||||||+||++||.++|+|+||++.+++|+.|++.+.+.+.
T Consensus 80 Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~--------------------------- 132 (242)
T PTZ00408 80 LEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTED--------------------------- 132 (242)
T ss_pred HHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECCCCcccCchhh---------------------------
Confidence 9975 78899999999999999999999999999999999999987643210
Q ss_pred hhhhccCCCCCCCCCC--CeecccEeEeCC-CCCHhHHHHHHHHhhhCCEEEEEccCccchHHhh-----hccCcEEEEe
Q psy16867 193 EETISKFHVPQCPHCH--GDLKPDIVFFGD-NIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVK-----EHAKGYLGKG 264 (275)
Q Consensus 193 ~~~~~~~~~P~Cp~Cg--g~lrP~vv~f~E-~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~~r-----~~~~~~~v~i 264 (275)
+. ...|.||.|| |.+||+|||||| .++.+.++ +.+.+||++|+||||+.|.+... ...++.++.|
T Consensus 133 ---~~-~~~p~C~~Cg~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~I 205 (242)
T PTZ00408 133 ---VV-HGSSRCKCCGCVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLEL 205 (242)
T ss_pred ---hh-cCCCccccCCCCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEE
Confidence 00 1379999998 999999999999 67755444 45889999999999999984322 1237899999
Q ss_pred cCCCCCCCC
Q psy16867 265 NVQTTPFSF 273 (275)
Q Consensus 265 N~~~~~~~~ 273 (275)
|+++++++.
T Consensus 206 N~~~~~~~~ 214 (242)
T PTZ00408 206 NLEEGTNYS 214 (242)
T ss_pred CCCCCCCCc
Confidence 999988765
No 15
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=9.2e-51 Score=369.23 Aligned_cols=216 Identities=32% Similarity=0.516 Sum_probs=176.0
Q ss_pred CcHHHHHHHHHHHHh--CCcEEEEeCccccccCCCCCcccCCCccccccCCC-------CCChHHHHhChHHHHHHHHHh
Q psy16867 23 VEESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-------PVQFQDFLKSRRVRIRYWARN 93 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~--a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 93 (275)
.....|+.++++|++ +++|||+||||||++|||||||+++.|+|.+.... .++...|.++|+.+|.|+...
T Consensus 12 ~~~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~~ 91 (349)
T PTZ00410 12 VGEPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREM 91 (349)
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHHh
Confidence 445678999999998 57999999999999999999999933999874321 235567778998888876543
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhc--CCceEEecccccceeeCCCCcccchhHHHHHHHh
Q psy16867 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILED 171 (275)
Q Consensus 94 ~~~~~~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG--~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~ 171 (275)
..|. .+++||.+|++|+.|++.|++.+|||||||+||++|| .++|+|+||++.+++|..|++.+..+....
T Consensus 92 -~~~~--~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~---- 164 (349)
T PTZ00410 92 -DLWP--GHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYL---- 164 (349)
T ss_pred -hccc--CcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHH----
Confidence 2232 3689999999999999999999999999999999999 468999999999999999998764332110
Q ss_pred cCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH
Q psy16867 172 LNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI 251 (275)
Q Consensus 172 ~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~ 251 (275)
......+|+|+.|||.|||+||||||.+|+..++ +.+++.+||++||||||++|.+
T Consensus 165 -----------------------~~~~~~vP~C~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~P 220 (349)
T PTZ00410 165 -----------------------EARSGKVPHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHP 220 (349)
T ss_pred -----------------------HhhcCCCCCCCCCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccC
Confidence 0112348999999999999999999999998787 8889999999999999999974
Q ss_pred Hhh----hccCcEEEEecCCCC
Q psy16867 252 LVK----EHAKGYLGKGNVQTT 269 (275)
Q Consensus 252 ~~r----~~~~~~~v~iN~~~~ 269 (275)
... ...++.+|.||++++
T Consensus 221 aa~l~~~a~~~~pvviIN~e~~ 242 (349)
T PTZ00410 221 FALLACVVPKDVPRVLFNLERV 242 (349)
T ss_pred HHHHHHHHhcCCCEEEECcccc
Confidence 311 113689999999875
No 16
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=2.5e-48 Score=327.37 Aligned_cols=174 Identities=39% Similarity=0.688 Sum_probs=136.1
Q ss_pred CccccccCCCCCccc-CCCccccccCCCC-CChHHHHhChHHHHH-HHHHhhcCCCCCCCCCCCHHHHHHHHHHHcCCcc
Q psy16867 46 GAGISTESGIPDYRS-EGVGLYARSDKRP-VQFQDFLKSRRVRIR-YWARNFVGWPRFSSFQPNANHYALKQMEDNEKLS 122 (275)
Q Consensus 46 GAGiS~~sGiP~fr~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~h~~L~~L~~~~~~~ 122 (275)
|||||++|||||||+ .+ |+|++..... .+...|..++...|. |+......+. .+++||.+|++|++|++.++++
T Consensus 1 GAGiS~~SGIpdfR~~~~-Glw~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~--~~a~Pn~~H~~La~L~~~g~~~ 77 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPD-GLWTKYKPEELATPEAFFSDPEFVWEKFYRFRRKVIS--KDAEPNPGHRALAELEKKGKLK 77 (178)
T ss_dssp -GGGGGGGT--SSSSTTS-CHHHHCHHHHHSSHHHHHHHHHHHHHHHHHHHHHHCT--CTS---HHHHHHHHHHHTTSEE
T ss_pred CCccchhhCCCccccCCC-CcceeeeccccccccccccccchhhhHHHHHhhhhcc--ccCCCChhHHHHHHHHHhhhhc
Confidence 999999999999999 77 9999864333 356677788877787 5554432211 2899999999999999999999
Q ss_pred EEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCC
Q psy16867 123 YIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVP 202 (275)
Q Consensus 123 ~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P 202 (275)
+||||||||||++||.++|+|+||++..++|+.|++++...+..... .....|
T Consensus 78 ~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~---------------------------~~~~~~ 130 (178)
T PF02146_consen 78 RVITQNIDGLHQKAGSPKVIELHGSLFRLRCSKCGKEYDREDIVDSI---------------------------DEEEPP 130 (178)
T ss_dssp EEEES-SSSHHHHTTESCEEETTEEEEEEEETTTSBEEEGHHHHHHH---------------------------HTTSSC
T ss_pred cceecccchhhhcccchhhHHHHhhhceeeecCCCccccchhhcccc---------------------------cccccc
Confidence 99999999999999999999999999999999999998765543222 223478
Q ss_pred CCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccch
Q psy16867 203 QCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP 250 (275)
Q Consensus 203 ~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~ 250 (275)
+||.||+.|||+||||||.++ +.+..+.+++++||++|+||||++|.
T Consensus 131 ~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~ 177 (178)
T PF02146_consen 131 RCPKCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVY 177 (178)
T ss_dssp BCTTTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STST
T ss_pred cccccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEE
Confidence 999999999999999999999 78888888999999999999999985
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=1.3e-46 Score=327.06 Aligned_cols=201 Identities=38% Similarity=0.610 Sum_probs=171.6
Q ss_pred CcEEEEeCccccccCCCCCcccCCCccccccCCCCC--ChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHH
Q psy16867 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPV--QFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQME 116 (275)
Q Consensus 39 ~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~~L~~L~ 116 (275)
+++|++||||||++|||||||+.+.|+|.+...... +...|..+++.+|.|+..... ...+++||.+|++|++|.
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~~~H~~l~~l~ 77 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRY---TPLDAKPNPAHRALAELE 77 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHh---hhCcCCCCHHHHHHHHHH
Confidence 579999999999999999999986699998654432 567788888888888876653 345899999999999999
Q ss_pred HcCCccEEEecCcchhHhhhcCC--ceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchh
Q psy16867 117 DNEKLSYIITQNVDGLHYKAGNK--KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEE 194 (275)
Q Consensus 117 ~~~~~~~viTqNiD~L~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~ 194 (275)
+.+++++|||||+|+||++||.+ +|+++||++...+|+.|+..+...+..
T Consensus 78 ~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~---------------------------- 129 (222)
T cd00296 78 RKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVL---------------------------- 129 (222)
T ss_pred HcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhh----------------------------
Confidence 98999999999999999999976 999999999999999999876443321
Q ss_pred hhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH---hhhc--cCcEEEEecCCCC
Q psy16867 195 TISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL---VKEH--AKGYLGKGNVQTT 269 (275)
Q Consensus 195 ~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~---~r~~--~~~~~v~iN~~~~ 269 (275)
....+|+||.|||.|||+|++|||.+++..+.++.+.+.++|++|+||||+.|+.+ ++.. .++.++.||++++
T Consensus 130 --~~~~~p~C~~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~ 207 (222)
T cd00296 130 --EREKPPRCPKCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPT 207 (222)
T ss_pred --hccCCCCCCCCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCC
Confidence 11348999999999999999999999988888899999999999999999999843 2221 2689999999999
Q ss_pred CCC
Q psy16867 270 PFS 272 (275)
Q Consensus 270 ~~~ 272 (275)
+.+
T Consensus 208 ~~~ 210 (222)
T cd00296 208 PAD 210 (222)
T ss_pred CCC
Confidence 987
No 18
>KOG2684|consensus
Probab=100.00 E-value=2.2e-43 Score=319.91 Aligned_cols=212 Identities=33% Similarity=0.551 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCC-------CChHHHHhChHHHHHHHHHhhcCCC
Q psy16867 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-------VQFQDFLKSRRVRIRYWARNFVGWP 98 (275)
Q Consensus 26 ~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (275)
+.+..+..+|++|++|||+||||||+++||||||+.+ |+|.+..... +++..|..++..+.+|....+ +
T Consensus 76 ~t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~-G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~---~ 151 (412)
T KOG2684|consen 76 NTLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSE-GIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELK---P 151 (412)
T ss_pred ccHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccc-cHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhc---C
Confidence 6788999999999999999999999999999999999 9999876532 344556667765555555444 2
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCC--ceEEecccccceeeCCCCcccchhHHHHHHHhcCChh
Q psy16867 99 RFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNK--KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDL 176 (275)
Q Consensus 99 ~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~ 176 (275)
....|++.|.+|+.|.+.||+.++||||||+|+++||.. +++++|||+....|+.|+.....+++.+
T Consensus 152 --~~~~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~--------- 220 (412)
T KOG2684|consen 152 --PSNNPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELRE--------- 220 (412)
T ss_pred --CccCCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHH---------
Confidence 244599999999999999999999999999999999955 5999999999999999999886654322
Q ss_pred hhhhccCCCCCCcccchhhhccCCCCCCCCCCC------------------eecccEeEeCCCCCHhHHHHHHHHhhhCC
Q psy16867 177 MIESQEMRPDGDVEMSEETISKFHVPQCPHCHG------------------DLKPDIVFFGDNIPRHRMEKIDHLVRSCD 238 (275)
Q Consensus 177 ~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg------------------~lrP~vv~f~E~~~~~~~~~~~~~~~~~d 238 (275)
.++...+|.||.|.+ .|||+||||||.+|+............+|
T Consensus 221 ------------------~~~~~~vp~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~D 282 (412)
T KOG2684|consen 221 ------------------DIRNQEVPVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECD 282 (412)
T ss_pred ------------------HHhcCcCccCcccccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccc
Confidence 234456999999965 89999999999999998888777778889
Q ss_pred EEEEEccCccchHHhhhc----cCcEEEEecCCCCC
Q psy16867 239 GVLVLGSSLTVPILVKEH----AKGYLGKGNVQTTP 270 (275)
Q Consensus 239 liLvlGts~~v~~~~r~~----~~~~~v~iN~~~~~ 270 (275)
|+||||||+.|++|.+-. +....|.||.++-+
T Consensus 283 llIviGTSLKV~pV~~iv~~~~~~vpqIliNr~~v~ 318 (412)
T KOG2684|consen 283 LLIVIGTSLKVRPVAEIVKSFPAKVPQILINRDPVP 318 (412)
T ss_pred eEEEeCCccccccHHHHHhhhcccCcEEEecCcccc
Confidence 999999999999754422 25678889987433
No 19
>KOG2682|consensus
Probab=100.00 E-value=6.7e-41 Score=283.31 Aligned_cols=213 Identities=31% Similarity=0.518 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHh--CCcEEEEeCccccccCCCCCcccCCCccccccCCCCC-------ChHHHHhChHHHHHHHHHhhc
Q psy16867 25 ESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPV-------QFQDFLKSRRVRIRYWARNFV 95 (275)
Q Consensus 25 ~~~l~~l~~~l~~--a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 95 (275)
.-.+++++.+++. .++|++..|||||+++||||||+++.|+|.+.+...+ ....|..+|..+ |.-...
T Consensus 21 ~l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF---~tLAkE 97 (314)
T KOG2682|consen 21 ELTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPF---FTLAKE 97 (314)
T ss_pred hhhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchH---HHHHHH
Confidence 3458899999985 4689999999999999999999998899988654433 334566777643 332222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhc--CCceEEecccccceeeC-CCCcccchhHHHHHHHhc
Q psy16867 96 GWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAFRVMCL-GCDYEIDRHKFQKILEDL 172 (275)
Q Consensus 96 ~~~~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG--~~~v~elHG~~~~~~C~-~C~~~~~~~~~~~~~~~~ 172 (275)
.|. .+.+||.+|++|+.|.+++.+.++||||||+|.+.|| .+.++|.||++.+..|. .|.+.+....+..
T Consensus 98 LyP--gnfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka----- 170 (314)
T KOG2682|consen 98 LYP--GNFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKA----- 170 (314)
T ss_pred hCC--CCcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHH-----
Confidence 334 5889999999999999999999999999999999999 57899999999999999 5999886555432
Q ss_pred CChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH
Q psy16867 173 NPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL 252 (275)
Q Consensus 173 ~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~ 252 (275)
.+....+|+|+.|+|.+||+||||||++|...++-.+..+..+|++||||||+.|.++
T Consensus 171 ----------------------~i~~~~vpkC~vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PF 228 (314)
T KOG2682|consen 171 ----------------------KIMSEVVPKCEVCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPF 228 (314)
T ss_pred ----------------------HHHhccCCCCchhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeec
Confidence 2334458999999999999999999999999999999999999999999999999866
Q ss_pred hhhcc----CcEEEEecCCCC
Q psy16867 253 VKEHA----KGYLGKGNVQTT 269 (275)
Q Consensus 253 ~r~~~----~~~~v~iN~~~~ 269 (275)
+.-+. +..=+.||.++.
T Consensus 229 AsLpe~vp~~v~RlLiNre~~ 249 (314)
T KOG2682|consen 229 ASLPEKVPLSVPRLLINREKA 249 (314)
T ss_pred ccchhhhhhcCceeEeccccc
Confidence 54433 466677888764
No 20
>KOG1905|consensus
Probab=100.00 E-value=5.2e-39 Score=279.56 Aligned_cols=207 Identities=31% Similarity=0.526 Sum_probs=166.5
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSS 102 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (275)
....++++|++++++++++||+||||||++||||||||+. |+|+..+...-.+ ...++.
T Consensus 40 ~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~-GVWTL~~kG~~~~--------------------~~df~~ 98 (353)
T KOG1905|consen 40 VLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQ-GVWTLQQKGKDKF--------------------GVDFSE 98 (353)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCC-ceeehhhcCcccc--------------------CCchhh
Confidence 4468999999999999999999999999999999999999 9999754321100 023468
Q ss_pred CCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhh
Q psy16867 103 FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIES 180 (275)
Q Consensus 103 ~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~ 180 (275)
+.|+.+|++|.+|.+.|.+++|||||+||||.|+|. +++.|+|||++..+|.+|..++.++...+..
T Consensus 99 ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~----------- 167 (353)
T KOG1905|consen 99 ARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTV----------- 167 (353)
T ss_pred cCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeec-----------
Confidence 999999999999999999999999999999999994 7899999999999999999988655432111
Q ss_pred ccCCCCCCcccchhhhccCCCCC---CCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH-----H
Q psy16867 181 QEMRPDGDVEMSEETISKFHVPQ---CPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI-----L 252 (275)
Q Consensus 181 ~~~~~~~d~~~~~~~~~~~~~P~---Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~-----~ 252 (275)
.+ ....++-+..+ |..|.|.||..++-++..+|...|+.+.+..++||++|++|||+++-+ +
T Consensus 168 ---------gl-~at~R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl 237 (353)
T KOG1905|consen 168 ---------GL-KATGRHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPL 237 (353)
T ss_pred ---------cc-ccccccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcch
Confidence 00 11122223444 455556678888888888999999999999999999999999999851 1
Q ss_pred -hhhccCcEEEEecCCCCCCC
Q psy16867 253 -VKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 253 -~r~~~~~~~v~iN~~~~~~~ 272 (275)
.+. .+++++.||+|+|+=|
T Consensus 238 ~~~k-~g~K~~ivNlQ~T~hD 257 (353)
T KOG1905|consen 238 KMKK-RGGKIVIVNLQWTPHD 257 (353)
T ss_pred hHhc-cCceEEEEeCccCccc
Confidence 222 3789999999999865
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=99.33 E-value=1.7e-12 Score=114.34 Aligned_cols=112 Identities=22% Similarity=0.258 Sum_probs=69.2
Q ss_pred CcEEEEeCccccccCCCCCcccCCCccccccCCCCC----------Ch---HHHHhChHHHHHHHHH-hhcCCCCCCCCC
Q psy16867 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPV----------QF---QDFLKSRRVRIRYWAR-NFVGWPRFSSFQ 104 (275)
Q Consensus 39 ~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 104 (275)
+++|+|+|||+|+++|+|+|++.-..++........ .+ .+++.........-.. .... ......+
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEE-KTRPDFE 79 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHh-ccCCCCC
Confidence 479999999999999999998742234433221110 11 1111111100000000 0000 1124678
Q ss_pred CCHHHHHHHHHHHcCC-ccEEEecCcchhHhhhc----------------------CCceEEecccccce
Q psy16867 105 PNANHYALKQMEDNEK-LSYIITQNVDGLHYKAG----------------------NKKVIEMHGTAFRV 151 (275)
Q Consensus 105 P~~~h~~L~~L~~~~~-~~~viTqNiD~L~~~aG----------------------~~~v~elHG~~~~~ 151 (275)
|+..|.+|++|...++ ...|||||+|.|+++|- ...|+++||++...
T Consensus 80 ~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~klHG~~~~~ 149 (242)
T cd01406 80 PSPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVVKVIVSVQLALSASARFNGVYKIHGDVDDD 149 (242)
T ss_pred CCHHHHHHHhchhccCCceEEEEcchHHHHHHHHHHcCCCCCcccCccccccccCCCceEEEEecccCCC
Confidence 9999999999976443 56899999999999872 13699999999864
No 22
>PF13289 SIR2_2: SIR2-like domain
Probab=94.49 E-value=0.029 Score=44.44 Aligned_cols=14 Identities=57% Similarity=0.503 Sum_probs=12.9
Q ss_pred EEEecCcchhHhhh
Q psy16867 123 YIITQNVDGLHYKA 136 (275)
Q Consensus 123 ~viTqNiD~L~~~a 136 (275)
.|+|||+|.|.++|
T Consensus 2 ~iiTtNyD~llE~a 15 (143)
T PF13289_consen 2 TIITTNYDDLLEKA 15 (143)
T ss_pred EEEECCHhHHHHHH
Confidence 68999999999987
No 23
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=92.91 E-value=0.063 Score=43.67 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=11.1
Q ss_pred ccceeeCCCCcccc
Q psy16867 148 AFRVMCLGCDYEID 161 (275)
Q Consensus 148 ~~~~~C~~C~~~~~ 161 (275)
...++|.+|++...
T Consensus 110 ~G~l~C~~Cg~~~~ 123 (146)
T PF07295_consen 110 PGTLVCENCGHEVE 123 (146)
T ss_pred CceEecccCCCEEE
Confidence 45679999999763
No 24
>PRK11032 hypothetical protein; Provisional
Probab=92.56 E-value=0.079 Score=43.68 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=10.5
Q ss_pred ccceeeCCCCccc
Q psy16867 148 AFRVMCLGCDYEI 160 (275)
Q Consensus 148 ~~~~~C~~C~~~~ 160 (275)
+..+.|.+|++..
T Consensus 122 ~G~LvC~~Cg~~~ 134 (160)
T PRK11032 122 LGNLVCEKCHHHL 134 (160)
T ss_pred cceEEecCCCCEE
Confidence 3567999999976
No 25
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=89.99 E-value=0.19 Score=31.13 Aligned_cols=13 Identities=38% Similarity=1.188 Sum_probs=10.5
Q ss_pred CCCCCCCCCCeec
Q psy16867 200 HVPQCPHCHGDLK 212 (275)
Q Consensus 200 ~~P~Cp~Cgg~lr 212 (275)
....||.||+.++
T Consensus 25 ~~~~CP~Cg~~~~ 37 (41)
T smart00834 25 PLATCPECGGDVR 37 (41)
T ss_pred CCCCCCCCCCcce
Confidence 3678999999765
No 26
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=89.59 E-value=0.23 Score=31.43 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=10.7
Q ss_pred ccceeeCCCCcccc
Q psy16867 148 AFRVMCLGCDYEID 161 (275)
Q Consensus 148 ~~~~~C~~C~~~~~ 161 (275)
++..+|..|++.+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (42)
T PF09723_consen 3 IYEYRCEECGHEFE 16 (42)
T ss_pred CEEEEeCCCCCEEE
Confidence 35679999998763
No 27
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=89.38 E-value=0.4 Score=39.50 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHc-------------CCccEEEecCcchhHhhhc---------CCceEEecccccceeeCCCCcc
Q psy16867 102 SFQPNANHYALKQMEDN-------------EKLSYIITQNVDGLHYKAG---------NKKVIEMHGTAFRVMCLGCDYE 159 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~-------------~~~~~viTqNiD~L~~~aG---------~~~v~elHG~~~~~~C~~C~~~ 159 (275)
..+.+...+.|..|.+. |....+|+-|.+.+...-- .++-++-..+-....|..|+.+
T Consensus 39 gi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~lk~~l~~e~~~~~Y~Cp~c~~r 118 (158)
T TIGR00373 39 GIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKLREKLEFETNNMFFICPNMCVR 118 (158)
T ss_pred CCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEECCCCCcE
Confidence 55666777777777642 3344566667776655431 1234455556667789999998
Q ss_pred cchhH
Q psy16867 160 IDRHK 164 (275)
Q Consensus 160 ~~~~~ 164 (275)
+...+
T Consensus 119 ~tf~e 123 (158)
T TIGR00373 119 FTFNE 123 (158)
T ss_pred eeHHH
Confidence 86554
No 28
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=85.91 E-value=1.4 Score=34.75 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=31.8
Q ss_pred HHHHHhhhCCEEEEEccCccch-HH---hhhccCcEEEEecCCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVP-IL---VKEHAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~-~~---~r~~~~~~~v~iN~~~~~~~~ 273 (275)
.+.+.+++||++|++|+++.-. +. .....+.++|.|+.++..+..
T Consensus 70 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~ 118 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGK 118 (137)
T ss_dssp HHHHHHHHSSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTS
T ss_pred HHHHHhcCCCEEEEECCCCccccccccccccCCCCEEEEEECCHHHhCC
Confidence 5567788999999999998552 11 112223489999999887653
No 29
>PRK06260 threonine synthase; Validated
Probab=84.62 E-value=0.59 Score=44.19 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=10.6
Q ss_pred cceeeCCCCcccc
Q psy16867 149 FRVMCLGCDYEID 161 (275)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (275)
..++|..|++++.
T Consensus 2 ~~~~C~~cg~~~~ 14 (397)
T PRK06260 2 YWLKCIECGKEYD 14 (397)
T ss_pred CEEEECCCCCCCC
Confidence 4589999999873
No 30
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=83.33 E-value=0.89 Score=38.24 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=27.3
Q ss_pred EecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecc
Q psy16867 143 EMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKP 213 (275)
Q Consensus 143 elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP 213 (275)
+...+-....|..|+.++...+.. + ....||.||+.|..
T Consensus 110 ~~e~~~~~Y~Cp~C~~rytf~eA~------------------------------~--~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 110 EEEENNMFFFCPNCHIRFTFDEAM------------------------------E--YGFRCPQCGEMLEE 148 (178)
T ss_pred hhccCCCEEECCCCCcEEeHHHHh------------------------------h--cCCcCCCCCCCCee
Confidence 444444667899999988654421 0 25799999999875
No 31
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=83.24 E-value=0.75 Score=28.12 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=9.6
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
..+||+||..+.
T Consensus 25 ~v~C~~C~~~~~ 36 (38)
T TIGR02098 25 KVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEE
Confidence 468999998764
No 32
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=83.06 E-value=1.7 Score=29.10 Aligned_cols=42 Identities=26% Similarity=0.569 Sum_probs=28.3
Q ss_pred CceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCee
Q psy16867 139 KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211 (275)
Q Consensus 139 ~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~l 211 (275)
.-|..++|. .|+.|+-..+...+.+.. ....+..||.||..|
T Consensus 15 ~~va~v~~~----~C~gC~~~l~~~~~~~i~---------------------------~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 15 VAVARVEGG----TCSGCHMELPPQELNEIR---------------------------KGDEIVFCPNCGRIL 56 (56)
T ss_pred cEEEEeeCC----ccCCCCEEcCHHHHHHHH---------------------------cCCCeEECcCCCccC
Confidence 456677776 799999987655443221 112488999999764
No 33
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=83.01 E-value=0.57 Score=37.16 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=9.0
Q ss_pred eeeCCCCcccc
Q psy16867 151 VMCLGCDYEID 161 (275)
Q Consensus 151 ~~C~~C~~~~~ 161 (275)
-+|++|++.+.
T Consensus 2 H~Ct~Cg~~f~ 12 (131)
T PF09845_consen 2 HQCTKCGRVFE 12 (131)
T ss_pred cccCcCCCCcC
Confidence 37999999874
No 34
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=82.65 E-value=0.67 Score=47.90 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=28.0
Q ss_pred Eeccccc-----ceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccE
Q psy16867 143 EMHGTAF-----RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDI 215 (275)
Q Consensus 143 elHG~~~-----~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~v 215 (275)
-|-||+. .++|++|+..|.+-. -..+|++|||.+-++|
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~P-----------------------------------L~G~C~kCGg~lilTV 1042 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRIP-----------------------------------LVGKCLKCGNNLTLTV 1042 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccCC-----------------------------------CCCcccccCCeEEEEE
Confidence 5668886 459999999874311 1458999999887776
No 35
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=82.28 E-value=0.93 Score=29.73 Aligned_cols=13 Identities=15% Similarity=0.690 Sum_probs=10.2
Q ss_pred cceeeCCCCcccc
Q psy16867 149 FRVMCLGCDYEID 161 (275)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (275)
+..+|..|++.+.
T Consensus 4 Yey~C~~Cg~~fe 16 (52)
T TIGR02605 4 YEYRCTACGHRFE 16 (52)
T ss_pred EEEEeCCCCCEeE
Confidence 4578999999763
No 36
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=81.92 E-value=0.89 Score=35.04 Aligned_cols=14 Identities=29% Similarity=0.885 Sum_probs=10.9
Q ss_pred CCCCCCCCCeeccc
Q psy16867 201 VPQCPHCHGDLKPD 214 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~ 214 (275)
...||+||....|.
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 34599999887776
No 37
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=81.28 E-value=1 Score=28.90 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.6
Q ss_pred ceeeCCCCcccc
Q psy16867 150 RVMCLGCDYEID 161 (275)
Q Consensus 150 ~~~C~~C~~~~~ 161 (275)
..+|.+|+..+.
T Consensus 3 ~y~C~~CG~~~~ 14 (46)
T PRK00398 3 EYKCARCGREVE 14 (46)
T ss_pred EEECCCCCCEEE
Confidence 468999999763
No 38
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=80.87 E-value=0.63 Score=35.17 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=9.2
Q ss_pred eeeCCCCcccc
Q psy16867 151 VMCLGCDYEID 161 (275)
Q Consensus 151 ~~C~~C~~~~~ 161 (275)
.||++|++.+.
T Consensus 3 H~CtrCG~vf~ 13 (112)
T COG3364 3 HQCTRCGEVFD 13 (112)
T ss_pred ceecccccccc
Confidence 48999999874
No 39
>PRK04023 DNA polymerase II large subunit; Validated
Probab=80.23 E-value=0.92 Score=47.23 Aligned_cols=38 Identities=24% Similarity=0.569 Sum_probs=28.2
Q ss_pred Eeccccc-----ceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccE
Q psy16867 143 EMHGTAF-----RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDI 215 (275)
Q Consensus 143 elHG~~~-----~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~v 215 (275)
-|-||+. .++|++|+..|.+-. -..+|++|||.+-++|
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~P-----------------------------------L~G~C~kCGg~lilTV 1067 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRPP-----------------------------------LSGKCPKCGGNLILTV 1067 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccCC-----------------------------------CCCcCccCCCeEEEEE
Confidence 5668886 459999999874311 1458999999988776
No 40
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=79.08 E-value=1 Score=47.96 Aligned_cols=38 Identities=21% Similarity=0.519 Sum_probs=28.1
Q ss_pred Eeccccc-----ceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccE
Q psy16867 143 EMHGTAF-----RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDI 215 (275)
Q Consensus 143 elHG~~~-----~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~v 215 (275)
-|-||+. .++|++|+..|.+-. -..+|++|||.+-++|
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~P-----------------------------------L~G~C~kCGg~iilTv 1283 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRMP-----------------------------------LAGKCRKCGGRIILTV 1283 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccCC-----------------------------------CCCcccccCCeEEEEE
Confidence 5668886 459999999874311 1458999999887776
No 41
>PRK07591 threonine synthase; Validated
Probab=77.96 E-value=1.4 Score=42.01 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.7
Q ss_pred CCCCCCCCeeccc
Q psy16867 202 PQCPHCHGDLKPD 214 (275)
Q Consensus 202 P~Cp~Cgg~lrP~ 214 (275)
.+||.||++|...
T Consensus 34 ~~C~~cg~~l~~~ 46 (421)
T PRK07591 34 HVCEECFGPLEVA 46 (421)
T ss_pred ccCCCCCCeEEEE
Confidence 6899999998743
No 42
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=77.88 E-value=0.56 Score=42.83 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=29.3
Q ss_pred EecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccE
Q psy16867 143 EMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDI 215 (275)
Q Consensus 143 elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~v 215 (275)
---|.++.--|+.|..++...+.. ..--+||+|||.++-.|
T Consensus 239 P~LGKY~~TAC~rC~t~y~le~A~--------------------------------~~~wrCpkCGg~ikKGV 279 (403)
T COG1379 239 PRLGKYHLTACSRCYTRYSLEEAK--------------------------------SLRWRCPKCGGKIKKGV 279 (403)
T ss_pred ccccchhHHHHHHhhhccCcchhh--------------------------------hhcccCcccccchhhhH
Confidence 345778888999999887543321 01468999999887666
No 43
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=77.29 E-value=2 Score=34.83 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=11.3
Q ss_pred ceeeCCCCcccchhH
Q psy16867 150 RVMCLGCDYEIDRHK 164 (275)
Q Consensus 150 ~~~C~~C~~~~~~~~ 164 (275)
...|..|+..+...+
T Consensus 99 ~Y~Cp~C~~~y~~~e 113 (147)
T smart00531 99 YYKCPNCQSKYTFLE 113 (147)
T ss_pred EEECcCCCCEeeHHH
Confidence 467999999886443
No 44
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=76.79 E-value=1 Score=25.28 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=8.4
Q ss_pred CCCCCCCCCee
Q psy16867 201 VPQCPHCHGDL 211 (275)
Q Consensus 201 ~P~Cp~Cgg~l 211 (275)
...||.||..|
T Consensus 16 ~~fC~~CG~~L 26 (26)
T PF13248_consen 16 AKFCPNCGAKL 26 (26)
T ss_pred cccChhhCCCC
Confidence 45799999764
No 45
>PRK12496 hypothetical protein; Provisional
Probab=75.51 E-value=1.6 Score=36.22 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=9.0
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
..+|..|++.+
T Consensus 127 ~~~C~gC~~~~ 137 (164)
T PRK12496 127 RKVCKGCKKKY 137 (164)
T ss_pred eEECCCCCccc
Confidence 46799999876
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.47 E-value=2.3 Score=37.46 Aligned_cols=41 Identities=27% Similarity=0.609 Sum_probs=27.4
Q ss_pred ceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCee
Q psy16867 140 KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211 (275)
Q Consensus 140 ~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~l 211 (275)
-|+.+.|.. |..|+-..+........ ....++.||.||..|
T Consensus 191 gvvpl~g~~----C~GC~m~l~~~~~~~V~---------------------------~~d~iv~CP~CgRIL 231 (239)
T COG1579 191 GVVPLEGRV----CGGCHMKLPSQTLSKVR---------------------------KKDEIVFCPYCGRIL 231 (239)
T ss_pred eEEeecCCc----ccCCeeeecHHHHHHHh---------------------------cCCCCccCCccchHH
Confidence 466777764 99999887654432211 223489999999764
No 47
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=75.10 E-value=2.1 Score=26.24 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=9.9
Q ss_pred ceeeCCCCcccch
Q psy16867 150 RVMCLGCDYEIDR 162 (275)
Q Consensus 150 ~~~C~~C~~~~~~ 162 (275)
..+|.+|+..+..
T Consensus 2 ~i~CP~C~~~f~v 14 (37)
T PF13719_consen 2 IITCPNCQTRFRV 14 (37)
T ss_pred EEECCCCCceEEc
Confidence 3589999998743
No 48
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=74.56 E-value=2.2 Score=26.03 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=10.5
Q ss_pred ceeeCCCCcccchh
Q psy16867 150 RVMCLGCDYEIDRH 163 (275)
Q Consensus 150 ~~~C~~C~~~~~~~ 163 (275)
..+|.+|+.++..+
T Consensus 2 ~i~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 2 IITCPNCQAKYEID 15 (36)
T ss_pred EEECCCCCCEEeCC
Confidence 36899999988543
No 49
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=73.86 E-value=2.1 Score=40.64 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=10.0
Q ss_pred cceeeCCCCccc
Q psy16867 149 FRVMCLGCDYEI 160 (275)
Q Consensus 149 ~~~~C~~C~~~~ 160 (275)
+.++|..|++++
T Consensus 1 ~~l~C~~Cg~~~ 12 (398)
T TIGR03844 1 YTLRCPGCGEVL 12 (398)
T ss_pred CEEEeCCCCCcc
Confidence 357999999986
No 50
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=73.77 E-value=1.6 Score=34.12 Aligned_cols=20 Identities=10% Similarity=0.458 Sum_probs=13.1
Q ss_pred eEEecccccceeeCCCCccc
Q psy16867 141 VIEMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 141 v~elHG~~~~~~C~~C~~~~ 160 (275)
-.++.---....|..|++.+
T Consensus 62 ~L~Ie~vp~~~~C~~Cg~~~ 81 (117)
T PRK00564 62 ILDIVDEKVELECKDCSHVF 81 (117)
T ss_pred EEEEEecCCEEEhhhCCCcc
Confidence 33444445567899999755
No 51
>PRK06450 threonine synthase; Validated
Probab=73.65 E-value=2.2 Score=39.51 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=8.8
Q ss_pred eeeCCCCccc
Q psy16867 151 VMCLGCDYEI 160 (275)
Q Consensus 151 ~~C~~C~~~~ 160 (275)
++|..|++.+
T Consensus 4 ~~C~~Cg~~~ 13 (338)
T PRK06450 4 EVCMKCGKER 13 (338)
T ss_pred eEECCcCCcC
Confidence 7899999976
No 52
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=72.89 E-value=2.4 Score=33.51 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=10.9
Q ss_pred CCCCCCCCCeeccc
Q psy16867 201 VPQCPHCHGDLKPD 214 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~ 214 (275)
...||+||....|.
T Consensus 26 p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 26 PAVSPYTGEQFPPE 39 (129)
T ss_pred CccCCCcCCccCcc
Confidence 67899999876555
No 53
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=72.65 E-value=1.9 Score=46.18 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=12.3
Q ss_pred CCCCCCCCCeecccE
Q psy16867 201 VPQCPHCHGDLKPDI 215 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~v 215 (275)
..+||+|||.+-++|
T Consensus 1557 ~G~C~kCGg~~ilTV 1571 (1627)
T PRK14715 1557 KGKCPKCGSKLILTV 1571 (1627)
T ss_pred CCcCcccCCeEEEEE
Confidence 458999999887776
No 54
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=70.95 E-value=3.3 Score=26.48 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=9.0
Q ss_pred CCCCCCCCCee
Q psy16867 201 VPQCPHCHGDL 211 (275)
Q Consensus 201 ~P~Cp~Cgg~l 211 (275)
.-+||.||..+
T Consensus 19 ~irC~~CG~rI 29 (44)
T smart00659 19 VVRCRECGYRI 29 (44)
T ss_pred ceECCCCCceE
Confidence 56899999864
No 55
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=70.77 E-value=5.5 Score=39.71 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=30.8
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhhhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.++++|+||+||+++..........+.++|.|+.++..+.
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~i~Id~d~~~~~ 308 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYSEFLPKEGQARGVQIDIDGRMLG 308 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHHhcCCCCCCCeEEEEeCCHHHcC
Confidence 45567889999999999986543322222468999988876543
No 56
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=69.91 E-value=3.5 Score=24.47 Aligned_cols=10 Identities=30% Similarity=0.746 Sum_probs=8.4
Q ss_pred eeeCCCCccc
Q psy16867 151 VMCLGCDYEI 160 (275)
Q Consensus 151 ~~C~~C~~~~ 160 (275)
.+|..|++.+
T Consensus 2 ~~C~~CGy~y 11 (33)
T cd00350 2 YVCPVCGYIY 11 (33)
T ss_pred EECCCCCCEE
Confidence 5899999876
No 57
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=69.18 E-value=3 Score=27.34 Aligned_cols=11 Identities=27% Similarity=0.773 Sum_probs=8.8
Q ss_pred CCCCCCCCCee
Q psy16867 201 VPQCPHCHGDL 211 (275)
Q Consensus 201 ~P~Cp~Cgg~l 211 (275)
.-+||.||..+
T Consensus 24 ~irCp~Cg~rI 34 (49)
T COG1996 24 GIRCPYCGSRI 34 (49)
T ss_pred ceeCCCCCcEE
Confidence 56899999863
No 58
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=68.89 E-value=3.3 Score=24.85 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=8.9
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
..+|..|++.+
T Consensus 2 ~~~C~~CG~i~ 12 (34)
T cd00729 2 VWVCPVCGYIH 12 (34)
T ss_pred eEECCCCCCEe
Confidence 46899999875
No 59
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=68.46 E-value=2.5 Score=23.09 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=5.5
Q ss_pred CCCCCCeeccc
Q psy16867 204 CPHCHGDLKPD 214 (275)
Q Consensus 204 Cp~Cgg~lrP~ 214 (275)
||+||..+.++
T Consensus 2 Cp~CG~~~~~~ 12 (23)
T PF13240_consen 2 CPNCGAEIEDD 12 (23)
T ss_pred CcccCCCCCCc
Confidence 55555554443
No 60
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.80 E-value=2.2 Score=30.53 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=14.2
Q ss_pred CCCCCCCCCCeec-----ccEeEeCC
Q psy16867 200 HVPQCPHCHGDLK-----PDIVFFGD 220 (275)
Q Consensus 200 ~~P~Cp~Cgg~lr-----P~vv~f~E 220 (275)
..-.||.||+.|| +.|+|=|-
T Consensus 32 plt~ce~c~a~~kk~l~~vgi~fKGS 57 (82)
T COG2331 32 PLTTCEECGARLKKLLNAVGIVFKGS 57 (82)
T ss_pred ccccChhhChHHHHhhccceEEEecc
Confidence 3668999999874 55555443
No 61
>PRK05858 hypothetical protein; Provisional
Probab=67.71 E-value=8.4 Score=37.89 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=35.4
Q ss_pred eCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHHh-hhccCcEEEEecCCCCCCC
Q psy16867 218 FGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILV-KEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 218 f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~~-r~~~~~~~v~iN~~~~~~~ 272 (275)
|.|.+|...-..+.+.+.++|+||.+|+++...... ....+.++|.|+.++..+.
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 299 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGVFGGTAQLVHVDDAPPQRA 299 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccccCCCCEEEEECCCHHHhc
Confidence 556655443344567788999999999987543211 1222468999998865443
No 62
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=67.48 E-value=2.2 Score=25.94 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=8.7
Q ss_pred cccccceeeCCCCccc
Q psy16867 145 HGTAFRVMCLGCDYEI 160 (275)
Q Consensus 145 HG~~~~~~C~~C~~~~ 160 (275)
.|.+...+|..|+..+
T Consensus 6 ~~~l~~~rC~~Cg~~~ 21 (37)
T PF12172_consen 6 EGRLLGQRCRDCGRVQ 21 (37)
T ss_dssp TT-EEEEE-TTT--EE
T ss_pred CCEEEEEEcCCCCCEe
Confidence 3566678999999864
No 63
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=66.33 E-value=3.1 Score=32.20 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=13.1
Q ss_pred eEEecccccceeeCCCCccc
Q psy16867 141 VIEMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 141 v~elHG~~~~~~C~~C~~~~ 160 (275)
-.+++=--...+|..|++.+
T Consensus 61 ~L~I~~vp~~~~C~~Cg~~~ 80 (113)
T PRK12380 61 DLHIVYKPAQAWCWDCSQVV 80 (113)
T ss_pred EEEEEeeCcEEEcccCCCEE
Confidence 33444444567899999765
No 64
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=65.45 E-value=6.2 Score=25.98 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=9.3
Q ss_pred eeeCCCCcccc
Q psy16867 151 VMCLGCDYEID 161 (275)
Q Consensus 151 ~~C~~C~~~~~ 161 (275)
.+|..|++.|+
T Consensus 2 y~C~~CgyiYd 12 (50)
T cd00730 2 YECRICGYIYD 12 (50)
T ss_pred cCCCCCCeEEC
Confidence 58999999874
No 65
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=65.39 E-value=3.4 Score=32.13 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=11.6
Q ss_pred EecccccceeeCCCCccc
Q psy16867 143 EMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 143 elHG~~~~~~C~~C~~~~ 160 (275)
+++=--...+|..|++.+
T Consensus 63 ~I~~~p~~~~C~~Cg~~~ 80 (115)
T TIGR00100 63 NIEDEPVECECEDCSEEV 80 (115)
T ss_pred EEEeeCcEEEcccCCCEE
Confidence 333334457899999765
No 66
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=65.03 E-value=5.3 Score=24.37 Aligned_cols=11 Identities=18% Similarity=0.467 Sum_probs=8.9
Q ss_pred eeeCCCCcccc
Q psy16867 151 VMCLGCDYEID 161 (275)
Q Consensus 151 ~~C~~C~~~~~ 161 (275)
..|.+|++.|.
T Consensus 2 r~C~~Cg~~Yh 12 (36)
T PF05191_consen 2 RICPKCGRIYH 12 (36)
T ss_dssp EEETTTTEEEE
T ss_pred cCcCCCCCccc
Confidence 57999999874
No 67
>KOG2906|consensus
Probab=63.60 E-value=5.4 Score=30.03 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=17.0
Q ss_pred eEEecccccceeeCCCCcccch
Q psy16867 141 VIEMHGTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 141 v~elHG~~~~~~C~~C~~~~~~ 162 (275)
+++-.++-+++.|..|.+.+..
T Consensus 12 ive~g~~~~rf~C~tCpY~~~I 33 (105)
T KOG2906|consen 12 IVESGESCNRFSCRTCPYVFPI 33 (105)
T ss_pred EEecCCeEeeEEcCCCCceeeE
Confidence 5566667789999999997653
No 68
>PRK14873 primosome assembly protein PriA; Provisional
Probab=62.98 E-value=45 Score=33.93 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCc
Q psy16867 107 ANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDY 158 (275)
Q Consensus 107 ~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~ 158 (275)
.....|++-.++| ..++--|-.|. ..++.|+-.-...+|..|+-
T Consensus 357 ~l~~~i~~~L~~g--qvll~lnRrGy------ap~l~C~~Cg~~~~C~~C~~ 400 (665)
T PRK14873 357 LAFRAARDALEHG--PVLVQVPRRGY------VPSLACARCRTPARCRHCTG 400 (665)
T ss_pred HHHHHHHHHHhcC--cEEEEecCCCC------CCeeEhhhCcCeeECCCCCC
Confidence 4455555555545 56666565543 34444444444455555554
No 69
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=62.90 E-value=4.7 Score=33.76 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=10.0
Q ss_pred CCCCCCCCCeecc
Q psy16867 201 VPQCPHCHGDLKP 213 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP 213 (275)
.-.||.||+.++-
T Consensus 153 ~~~Cp~CG~~~~~ 165 (177)
T COG1439 153 KDFCPICGSPLKR 165 (177)
T ss_pred CCcCCCCCCceEE
Confidence 4469999998753
No 70
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=62.51 E-value=6.9 Score=25.39 Aligned_cols=12 Identities=33% Similarity=0.777 Sum_probs=9.8
Q ss_pred ceeeCCCCcccc
Q psy16867 150 RVMCLGCDYEID 161 (275)
Q Consensus 150 ~~~C~~C~~~~~ 161 (275)
+.+|..|+..++
T Consensus 1 ky~C~~CgyvYd 12 (47)
T PF00301_consen 1 KYQCPVCGYVYD 12 (47)
T ss_dssp EEEETTTSBEEE
T ss_pred CcCCCCCCEEEc
Confidence 368999999875
No 71
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=62.26 E-value=6.4 Score=30.94 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 28 INKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 28 l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
+++++++|++|++.++++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999998854
No 72
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=62.18 E-value=13 Score=33.75 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=55.1
Q ss_pred CccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHH
Q psy16867 13 SISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWAR 92 (275)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (275)
=+|++|+..|..=-.++.++. |-++.++||.+|.| |||..+..+ | +..-+. .+ |.
T Consensus 159 ~RRVVpSP~P~~IvE~~~Ik~-L~~~g~vVI~~GGG-----GIPVv~~~~-~-~~GVeA-VI-------DK--------- 213 (312)
T COG0549 159 YRRVVPSPKPVRIVEAEAIKA-LLESGHVVIAAGGG-----GIPVVEEGA-G-LQGVEA-VI-------DK--------- 213 (312)
T ss_pred eeEecCCCCCccchhHHHHHH-HHhCCCEEEEeCCC-----CcceEecCC-C-cceeeE-EE-------cc---------
Confidence 457888877765445554444 44588899999998 999998776 5 322110 00 00
Q ss_pred hhcCCCCCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcC
Q psy16867 93 NFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN 138 (275)
Q Consensus 93 ~~~~~~~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~ 138 (275)
..+-..|+++.+ -+.++|.|.+|+.+..-|.
T Consensus 214 -------------DlasalLA~~i~--AD~liILTdVd~Vy~n~gk 244 (312)
T COG0549 214 -------------DLASALLAEQID--ADLLIILTDVDAVYVNFGK 244 (312)
T ss_pred -------------HHHHHHHHHHhc--CCEEEEEeccchheecCCC
Confidence 112245666654 5678999999998888773
No 73
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=62.11 E-value=6.9 Score=32.84 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=10.1
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
.-.||.||+.|+
T Consensus 132 ~F~Cp~Cg~~L~ 143 (176)
T COG1675 132 GFTCPKCGEDLE 143 (176)
T ss_pred CCCCCCCCchhh
Confidence 468999999876
No 74
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=62.09 E-value=2.9 Score=32.33 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=13.4
Q ss_pred ceEEecccccceeeCCCCcccc
Q psy16867 140 KVIEMHGTAFRVMCLGCDYEID 161 (275)
Q Consensus 140 ~v~elHG~~~~~~C~~C~~~~~ 161 (275)
.-.+++=--...+|..|++.+.
T Consensus 60 a~L~Ie~~p~~~~C~~Cg~~~~ 81 (113)
T PF01155_consen 60 AELEIEEVPARARCRDCGHEFE 81 (113)
T ss_dssp -EEEEEEE--EEEETTTS-EEE
T ss_pred CEEEEEecCCcEECCCCCCEEe
Confidence 3455555566789999999875
No 75
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=61.12 E-value=4.1 Score=31.60 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=11.6
Q ss_pred EecccccceeeCCCCccc
Q psy16867 143 EMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 143 elHG~~~~~~C~~C~~~~ 160 (275)
+++=--...+|..|++.+
T Consensus 63 ~i~~~p~~~~C~~Cg~~~ 80 (114)
T PRK03681 63 HLEEQEAECWCETCQQYV 80 (114)
T ss_pred EEEeeCcEEEcccCCCee
Confidence 333334456899999765
No 76
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.88 E-value=23 Score=34.72 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhCCEEEEEccCcc
Q psy16867 226 RMEKIDHLVRSCDGVLVLGSSLT 248 (275)
Q Consensus 226 ~~~~~~~~~~~~dliLvlGts~~ 248 (275)
.++...+.+.+.+.=|+|||...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCccc
Confidence 34555566655444445777653
No 77
>COG1773 Rubredoxin [Energy production and conversion]
Probab=60.80 E-value=10 Score=25.49 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.8
Q ss_pred cceeeCCCCcccc
Q psy16867 149 FRVMCLGCDYEID 161 (275)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (275)
...+|+.|+..|.
T Consensus 2 ~~~~C~~CG~vYd 14 (55)
T COG1773 2 KRWRCSVCGYVYD 14 (55)
T ss_pred CceEecCCceEec
Confidence 4689999999874
No 78
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=60.00 E-value=5.2 Score=31.99 Aligned_cols=14 Identities=21% Similarity=0.384 Sum_probs=10.8
Q ss_pred cceeeCCCCcccch
Q psy16867 149 FRVMCLGCDYEIDR 162 (275)
Q Consensus 149 ~~~~C~~C~~~~~~ 162 (275)
....|..|++.+..
T Consensus 69 ~~~~C~~CG~~~~~ 82 (135)
T PRK03824 69 AVLKCRNCGNEWSL 82 (135)
T ss_pred eEEECCCCCCEEec
Confidence 56789999987643
No 79
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=59.83 E-value=21 Score=29.96 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=37.0
Q ss_pred ecccEeEeCCCCCHhHHHHHHHHhh-hCCEEEEEccCccchHHhhhccCcEEEEecC
Q psy16867 211 LKPDIVFFGDNIPRHRMEKIDHLVR-SCDGVLVLGSSLTVPILVKEHAKGYLGKGNV 266 (275)
Q Consensus 211 lrP~vv~f~E~~~~~~~~~~~~~~~-~~dliLvlGts~~v~~~~r~~~~~~~v~iN~ 266 (275)
.+|.+++||....+ .++...+.+. +.+++|++| +..+|.=+-+.+...+..-|.
T Consensus 78 ~vvhLtmyga~~~~-~~~~ir~~~~~~~p~LIvvG-g~gvp~evye~aDynlgvg~q 132 (176)
T PRK03958 78 IVVHLTMYGENIQD-VEPEIREAHRKGEPLLIVVG-AEKVPREVYELADWNVAVGNQ 132 (176)
T ss_pred cEEEEEEecCCccc-hHHHHHHhhccCCcEEEEEc-CCCCCHHHHhhCCEEeccCCC
Confidence 47899999999877 5556655553 356999999 999996555555444433333
No 80
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=59.50 E-value=13 Score=36.66 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred ccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH----hhhccCcEEEEecCCCCCC
Q psy16867 197 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL----VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 197 ~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~----~r~~~~~~~v~iN~~~~~~ 271 (275)
+...+|.+....+. -.|.|.++...-......+++||+||++|+.+.-... .....+.++|.|+.++..+
T Consensus 231 e~~~~pv~tt~~gk-----g~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~ 304 (554)
T TIGR03254 231 EKTGIPFLPMSMAK-----GLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEM 304 (554)
T ss_pred HHHCCCEEEcCCcc-----eeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHh
Confidence 33445655443332 2455655533222334568899999999999863321 1112256788888876544
No 81
>PRK08197 threonine synthase; Validated
Probab=59.17 E-value=5.3 Score=37.67 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=10.5
Q ss_pred cceeeCCCCcccc
Q psy16867 149 FRVMCLGCDYEID 161 (275)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (275)
..++|..|++++.
T Consensus 6 ~~~~C~~Cg~~~~ 18 (394)
T PRK08197 6 SHLECSKCGETYD 18 (394)
T ss_pred eEEEECCCCCCCC
Confidence 3589999999873
No 82
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=58.26 E-value=8.7 Score=22.79 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=7.7
Q ss_pred CCCCCCCCCee
Q psy16867 201 VPQCPHCHGDL 211 (275)
Q Consensus 201 ~P~Cp~Cgg~l 211 (275)
.-+|+.||..+
T Consensus 17 ~irC~~CG~RI 27 (32)
T PF03604_consen 17 PIRCPECGHRI 27 (32)
T ss_dssp TSSBSSSS-SE
T ss_pred cEECCcCCCeE
Confidence 45899999753
No 83
>PRK08322 acetolactate synthase; Reviewed
Probab=57.76 E-value=13 Score=36.55 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=30.6
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhhh--ccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVKE--HAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r~--~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.++++|+||.||+++........ ..+.++|.||.++..+.
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~~~~~~~~~~~~~i~id~d~~~~~ 300 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKPPFFMNPNGDKKVIHINFLPAEVD 300 (547)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccCCCCCCeEEEEeCCHHHcC
Confidence 355677899999999998875432111 12568999998877654
No 84
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=55.79 E-value=8.6 Score=26.24 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCeecccEeE
Q psy16867 199 FHVPQCPHCHGDLKPDIVF 217 (275)
Q Consensus 199 ~~~P~Cp~Cgg~lrP~vv~ 217 (275)
...|.||-|++.|+..+-+
T Consensus 37 ~~~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 37 EEEPVCPLCKSPMVSGTRM 55 (59)
T ss_pred CCCccCCCcCCccccceee
Confidence 3479999999999876643
No 85
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=54.73 E-value=8.8 Score=21.61 Aligned_cols=10 Identities=50% Similarity=1.092 Sum_probs=7.5
Q ss_pred CCCCCCCCCe
Q psy16867 201 VPQCPHCHGD 210 (275)
Q Consensus 201 ~P~Cp~Cgg~ 210 (275)
.-.||+||-.
T Consensus 14 ~~~Cp~CG~~ 23 (26)
T PF10571_consen 14 AKFCPHCGYD 23 (26)
T ss_pred cCcCCCCCCC
Confidence 4579999854
No 86
>PLN02569 threonine synthase
Probab=54.64 E-value=7.2 Score=38.03 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=10.1
Q ss_pred ceeeCCCCcccc
Q psy16867 150 RVMCLGCDYEID 161 (275)
Q Consensus 150 ~~~C~~C~~~~~ 161 (275)
.++|..|++++.
T Consensus 49 ~l~C~~Cg~~y~ 60 (484)
T PLN02569 49 FLECPLTGEKYS 60 (484)
T ss_pred ccEeCCCCCcCC
Confidence 589999999874
No 87
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=53.44 E-value=11 Score=36.27 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=36.3
Q ss_pred ccEeEeCCCCCHh---HHHHHHHHhhhCCEEEEEccCccchHHhhhcc
Q psy16867 213 PDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVPILVKEHA 257 (275)
Q Consensus 213 P~vv~f~E~~~~~---~~~~~~~~~~~~dliLvlGts~~v~~~~r~~~ 257 (275)
-||++-+-.+|.+ ++++....+.+.|+.||+|....|.+.+|+.+
T Consensus 355 MNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp 402 (462)
T PRK09444 355 MNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDP 402 (462)
T ss_pred ceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCC
Confidence 4788877778865 45677788889999999999999987777643
No 88
>KOG1185|consensus
Probab=53.09 E-value=12 Score=36.23 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=40.4
Q ss_pred eCCCCCHhHHHHHHHHhhhCCEEEEEccCccch-HH---hhhccCcEEEEecCCCCCCCCC
Q psy16867 218 FGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP-IL---VKEHAKGYLGKGNVQTTPFSFL 274 (275)
Q Consensus 218 f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~-~~---~r~~~~~~~v~iN~~~~~~~~~ 274 (275)
.++.+|...-++--.++++||++|++|+-++=- .+ -|+...+++|.||..++.+..+
T Consensus 258 l~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n 318 (571)
T KOG1185|consen 258 LPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNN 318 (571)
T ss_pred CCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcc
Confidence 356666655555556788999999999988742 11 2344468999999998887654
No 89
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=52.95 E-value=19 Score=32.95 Aligned_cols=47 Identities=19% Similarity=0.414 Sum_probs=35.3
Q ss_pred CCCCccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCC
Q psy16867 10 TSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEG 62 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~ 62 (275)
+.--+|.+|+..|..-...+.+..+|+ .+.+||++|.| |+|.+...+
T Consensus 154 ~~~~rrvv~sp~p~~iv~~~~I~~LL~-~G~iVI~~ggg-----giPvi~e~~ 200 (310)
T TIGR00746 154 GRGWRRVVPSPRPKDIVEAETIKTLVE-NGVIVISSGGG-----GVPVVLEGA 200 (310)
T ss_pred CCcceEeecCCCchhhccHHHHHHHHH-CCCEEEeCCCC-----CcCEEecCC
Confidence 334567889888888888888887777 45688888766 899887543
No 90
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=52.75 E-value=5.2 Score=28.27 Aligned_cols=12 Identities=33% Similarity=0.803 Sum_probs=6.3
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
.+.||.|+.+|.
T Consensus 30 ~a~CPdC~~~Le 41 (70)
T PF07191_consen 30 EAFCPDCGQPLE 41 (70)
T ss_dssp EEE-TTT-SB-E
T ss_pred cccCCCcccHHH
Confidence 567888887653
No 91
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=52.65 E-value=9.2 Score=36.45 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=9.7
Q ss_pred cceeeCCCCccc
Q psy16867 149 FRVMCLGCDYEI 160 (275)
Q Consensus 149 ~~~~C~~C~~~~ 160 (275)
..+.|+.|++.+
T Consensus 6 t~f~C~~CG~~s 17 (456)
T COG1066 6 TAFVCQECGYVS 17 (456)
T ss_pred cEEEcccCCCCC
Confidence 357899999976
No 92
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=51.89 E-value=17 Score=36.02 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---hhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---KEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.+.+||+||+||+++...... ....+.++|.||.++..+.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~ 311 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSIS 311 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhC
Confidence 4456778999999999998654321 1223468899998876543
No 93
>PLN02470 acetolactate synthase
Probab=51.74 E-value=17 Score=36.18 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=28.6
Q ss_pred HHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
+.+.++++|+||+||+++..... .....+.++|.|+.++..+
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i 317 (585)
T PLN02470 273 ANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEI 317 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHh
Confidence 45677899999999998865422 1122246788898887543
No 94
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=51.39 E-value=17 Score=35.96 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.+.++|+||+||+.+..... -....+.++|.||.++..+
T Consensus 262 ~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~ 307 (563)
T PRK08527 262 AANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSI 307 (563)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHh
Confidence 345577899999999999865421 1112246789999887654
No 95
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=51.29 E-value=8.2 Score=36.33 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=14.0
Q ss_pred EecccccceeeCCCCcccc
Q psy16867 143 EMHGTAFRVMCLGCDYEID 161 (275)
Q Consensus 143 elHG~~~~~~C~~C~~~~~ 161 (275)
--.|-++.--|..|+..+.
T Consensus 233 P~~GKYh~~~c~~C~~~~~ 251 (374)
T TIGR00375 233 PLLGKYHQTACEACGEPAV 251 (374)
T ss_pred cCCCccchhhhcccCCcCC
Confidence 3457777888999988653
No 96
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=51.09 E-value=8.3 Score=23.83 Aligned_cols=11 Identities=45% Similarity=1.126 Sum_probs=9.0
Q ss_pred CCCCCCCeecc
Q psy16867 203 QCPHCHGDLKP 213 (275)
Q Consensus 203 ~Cp~Cgg~lrP 213 (275)
.||.||+.|.-
T Consensus 3 ~CP~Cg~~lv~ 13 (39)
T PF01396_consen 3 KCPKCGGPLVL 13 (39)
T ss_pred CCCCCCceeEE
Confidence 69999988753
No 97
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=50.99 E-value=18 Score=35.89 Aligned_cols=44 Identities=16% Similarity=0.066 Sum_probs=30.0
Q ss_pred HHHHHhhhCCEEEEEccCccchHH------hhhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL------VKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~------~r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.+++||+||+||+++.-... ...+.+..+|.|+.++..+.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~ 308 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIG 308 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhC
Confidence 445678899999999998753211 11223578999998876543
No 98
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=50.86 E-value=17 Score=36.48 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.+.++|+||+||+++..... .....+.++|.||.++..+
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i 328 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEV 328 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHh
Confidence 355677899999999999864321 1122356888998887543
No 99
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=50.72 E-value=17 Score=35.78 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---hhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---KEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r~~~~~~~v~iN~~~~~~ 271 (275)
.+...+.++|+||++|+++...... ....+.++|.||.++..+
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 300 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEI 300 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHh
Confidence 4556778999999999998654221 112246788998887544
No 100
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=50.57 E-value=24 Score=34.95 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=40.9
Q ss_pred ccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH----hhhccCcEEEEecCCCCCCC
Q psy16867 197 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL----VKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 197 ~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~----~r~~~~~~~v~iN~~~~~~~ 272 (275)
+...+|.+....+. -.|.|.+|...=......++++|+||+||+++.-... -....+.++|.|+.++..+.
T Consensus 238 e~l~iPV~tt~~gk-----g~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~ 312 (569)
T PRK09259 238 EKTGIPFLPMSMAK-----GLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEID 312 (569)
T ss_pred HHHCCCEEeccccc-----ccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhc
Confidence 34456666544332 2356665543212334567899999999999853211 01113568888888766543
No 101
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.18 E-value=4.2 Score=35.17 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.2
Q ss_pred ceeeCCCCcccch
Q psy16867 150 RVMCLGCDYEIDR 162 (275)
Q Consensus 150 ~~~C~~C~~~~~~ 162 (275)
...|.-|++.+..
T Consensus 5 ~~~CPvC~~~F~~ 17 (214)
T PF09986_consen 5 KITCPVCGKEFKT 17 (214)
T ss_pred ceECCCCCCeeee
Confidence 4689999998754
No 102
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=50.08 E-value=18 Score=35.78 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhhccCcEEEEecCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~~~~~~~v~iN~~~~~~ 271 (275)
+.+.++++|+||+||+++..... .+.+.++|.||.++..+
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~~~--~~~~~~ii~id~d~~~~ 298 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYRQF--YPTDAKIIQIDINPGSL 298 (574)
T ss_pred HHHHHHhCCEEEEECCCCCcccc--cCCCCcEEEeeCCHHHh
Confidence 34667899999999999865432 22246888898887654
No 103
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.67 E-value=18 Score=35.84 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=30.6
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---hhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---KEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.+.+||+||+||+++...... ....+.++|.||.++..+.
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~ 311 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSIS 311 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhC
Confidence 4556778999999999998765321 1222468899998776543
No 104
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.56 E-value=21 Score=35.32 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=30.0
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---hhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---KEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||+||+++...... ....+.++|.||.++..+
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~ 310 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSI 310 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHh
Confidence 4456778999999999998765321 122346788998876643
No 105
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=49.51 E-value=18 Score=35.84 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCcEEEEeCccccccC
Q psy16867 26 SDINKLKQFIEKYNKILVVTGAGISTES 53 (275)
Q Consensus 26 ~~l~~l~~~l~~a~~ivv~tGAGiS~~s 53 (275)
..|++++++|++|++.||++|.|+..+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 8899999999999999999999998765
No 106
>PRK05580 primosome assembly protein PriA; Validated
Probab=49.41 E-value=35 Score=34.77 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.1
Q ss_pred cccccceeeCCCCccc
Q psy16867 145 HGTAFRVMCLGCDYEI 160 (275)
Q Consensus 145 HG~~~~~~C~~C~~~~ 160 (275)
.|-.....|..|++..
T Consensus 376 rGy~~~~~C~~Cg~~~ 391 (679)
T PRK05580 376 RGYAPFLLCRDCGWVA 391 (679)
T ss_pred CCCCCceEhhhCcCcc
Confidence 5667788888888764
No 107
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=49.36 E-value=22 Score=32.66 Aligned_cols=42 Identities=26% Similarity=0.515 Sum_probs=32.7
Q ss_pred CccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCccc
Q psy16867 13 SISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRS 60 (275)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~ 60 (275)
=+|.+|+.+|..--+.+.++.+|+ .+.|+|++|-| |||-|..
T Consensus 160 ~RrvV~SP~P~~ive~~aI~~LLe-~G~IvI~~GgG-----GiPV~~~ 201 (313)
T PRK12454 160 WRRVVPSPDPLGIVEIEVIKALVE-NGFIVIASGGG-----GIPVIEE 201 (313)
T ss_pred eEEEeCCCCCccccCHHHHHHHHH-CCCEEEEeCCC-----ccceEcC
Confidence 457889888888788888888776 67888888876 7777654
No 108
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.35 E-value=16 Score=36.33 Aligned_cols=43 Identities=7% Similarity=0.215 Sum_probs=29.2
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh----hhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV----KEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~----r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||.||+++...... ..+.+.++|.||.++..+
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 326 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSI 326 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHh
Confidence 3456778999999999998654321 111236889998877543
No 109
>PRK06154 hypothetical protein; Provisional
Probab=49.31 E-value=20 Score=35.47 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=29.6
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhh-hccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVK-EHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r-~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||+||+++....... .+.+.++|.|+.++..+
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~~~~~~~~vI~id~d~~~~ 316 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGLPMPEGKTIIHSTLDDADL 316 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCccCCCCCeEEEEECCHHHh
Confidence 45567789999999999987432111 12356888888887644
No 110
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=49.12 E-value=17 Score=36.23 Aligned_cols=43 Identities=9% Similarity=-0.041 Sum_probs=29.4
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhh---hccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVK---EHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r---~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||++|+++....... ...+..+|.||.++..+
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i 307 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQI 307 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHh
Confidence 34566789999999999986532211 12246788999887654
No 111
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=49.09 E-value=20 Score=35.25 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=29.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhhhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.++++|+||.+|+++...... +.+.++|.||.++..+.
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~~~--~~~~~ii~id~d~~~~~ 293 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVNFL--NKSAKVIQVDIDNSNIG 293 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhhcC--CCCCcEEEEeCCHHHhC
Confidence 3456778999999999998653221 22468888888876553
No 112
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=48.91 E-value=9.9 Score=30.59 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=12.4
Q ss_pred ccccceeeCCCCccc
Q psy16867 146 GTAFRVMCLGCDYEI 160 (275)
Q Consensus 146 G~~~~~~C~~C~~~~ 160 (275)
|.+...+|.+|++.+
T Consensus 25 ~kl~g~kC~~CG~v~ 39 (140)
T COG1545 25 GKLLGTKCKKCGRVY 39 (140)
T ss_pred CcEEEEEcCCCCeEE
Confidence 666678999999976
No 113
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=48.77 E-value=21 Score=35.53 Aligned_cols=41 Identities=7% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhhhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.++++|+||+||+++...... .+..+|.||.++..+.
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~~~~---~~~~~I~vd~d~~~~~ 298 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYDQFL---PDVRTAQVDIDPEHLG 298 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChhhcC---CCCcEEEEeCCHHHhC
Confidence 4556778999999999998653222 2457888988876654
No 114
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=48.51 E-value=21 Score=35.43 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhh---hccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVK---EHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r---~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.++++|+||+||+++....... ...+.++|.||.++..+.
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~ 319 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFH 319 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhC
Confidence 34567889999999999986543211 122467888888776543
No 115
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=48.46 E-value=19 Score=30.13 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 27 DINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 27 ~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.=+.++++|++|++-+++.|.|+..
T Consensus 23 ~p~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 23 SPKIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred CHHHHHHHHHhCCCcEEEECcCccc
Confidence 3468889999999999999999975
No 116
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=48.29 E-value=6.9 Score=29.03 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.4
Q ss_pred ceeeCCCCcccc
Q psy16867 150 RVMCLGCDYEID 161 (275)
Q Consensus 150 ~~~C~~C~~~~~ 161 (275)
-.+|-+||.++.
T Consensus 58 Pa~CkkCGfef~ 69 (97)
T COG3357 58 PARCKKCGFEFR 69 (97)
T ss_pred ChhhcccCcccc
Confidence 358999999873
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=48.14 E-value=46 Score=34.25 Aligned_cols=10 Identities=30% Similarity=1.029 Sum_probs=8.0
Q ss_pred CCCCCCCCCe
Q psy16867 201 VPQCPHCHGD 210 (275)
Q Consensus 201 ~P~Cp~Cgg~ 210 (275)
.-.||+||+.
T Consensus 475 p~~Cp~Cgs~ 484 (730)
T COG1198 475 PQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCC
Confidence 3479999987
No 118
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=47.82 E-value=19 Score=35.73 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=28.2
Q ss_pred HHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTP 270 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~ 270 (275)
+.+.+.+||+||++|+++..... -....+..+|.||.++..
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 320 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAE 320 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHH
Confidence 44567899999999999865321 111224678999887753
No 119
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=47.67 E-value=8 Score=22.63 Aligned_cols=10 Identities=40% Similarity=1.374 Sum_probs=3.5
Q ss_pred CCCCCCCCCe
Q psy16867 201 VPQCPHCHGD 210 (275)
Q Consensus 201 ~P~Cp~Cgg~ 210 (275)
+|+||.|++.
T Consensus 2 ~p~Cp~C~se 11 (30)
T PF08274_consen 2 LPKCPLCGSE 11 (30)
T ss_dssp S---TTT---
T ss_pred CCCCCCCCCc
Confidence 6899999864
No 120
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=47.64 E-value=19 Score=38.91 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=14.5
Q ss_pred CCceEEecccccceeeCCCCccc
Q psy16867 138 NKKVIEMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 138 ~~~v~elHG~~~~~~C~~C~~~~ 160 (275)
....+++... ..+|.+|+...
T Consensus 657 ~~G~ieVEV~--~rkCPkCG~~t 677 (1337)
T PRK14714 657 EGGVIEVEVG--RRRCPSCGTET 677 (1337)
T ss_pred cCCeEEEEEE--EEECCCCCCcc
Confidence 4456666654 67888888864
No 121
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=47.60 E-value=9.9 Score=24.44 Aligned_cols=10 Identities=40% Similarity=1.301 Sum_probs=8.3
Q ss_pred CCCCCCCeec
Q psy16867 203 QCPHCHGDLK 212 (275)
Q Consensus 203 ~Cp~Cgg~lr 212 (275)
+||.||+.++
T Consensus 1 ~CP~Cg~~a~ 10 (47)
T PF04606_consen 1 RCPHCGSKAR 10 (47)
T ss_pred CcCCCCCeeE
Confidence 5999998875
No 122
>PRK08611 pyruvate oxidase; Provisional
Probab=47.48 E-value=23 Score=35.14 Aligned_cols=41 Identities=7% Similarity=0.027 Sum_probs=28.3
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhhccCcEEEEecCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~~~~~~~v~iN~~~~~~~ 272 (275)
+.+.++++|+||+||+++..... .+.+.++|.||.++..+.
T Consensus 261 a~~~l~~aDlvl~iG~~~~~~~~--~~~~~~~i~id~d~~~i~ 301 (576)
T PRK08611 261 AYEAMQEADLLIMVGTNYPYVDY--LPKKAKAIQIDTDPANIG 301 (576)
T ss_pred HHHHHHhCCEEEEeCCCCCcccc--CCCCCcEEEEeCCHHHcC
Confidence 45567899999999999854322 122367888888876543
No 123
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=47.47 E-value=13 Score=39.54 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=13.5
Q ss_pred hCCcEEEEeCccccccCCCCC
Q psy16867 37 KYNKILVVTGAGISTESGIPD 57 (275)
Q Consensus 37 ~a~~ivv~tGAGiS~~sGiP~ 57 (275)
..++|||.|||+.+..-+||.
T Consensus 517 ~yDaViIATGa~~pr~l~IpG 537 (1006)
T PRK12775 517 GFDAVFLGVGAGAPTFLGIPG 537 (1006)
T ss_pred CCCEEEEecCCCCCCCCCCCC
Confidence 367777777776655555553
No 124
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=47.05 E-value=19 Score=27.57 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEe--cccccceeeCCCCcccch
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM--HGTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 162 (275)
....+..|+.|..|.+.|.+..+-+.|-- ..|++ +..-.++.|..|++....
T Consensus 39 ~is~~TVYR~L~~L~e~Gli~~~~~~~~~---------~~Y~~~~~~~h~h~iC~~Cg~v~~~ 92 (120)
T PF01475_consen 39 RISLATVYRTLDLLEEAGLIRKIEFGDGE---------SRYELSTCHHHHHFICTQCGKVIDL 92 (120)
T ss_dssp T--HHHHHHHHHHHHHTTSEEEEEETTSE---------EEEEESSSSSCEEEEETTTS-EEEE
T ss_pred CcCHHHHHHHHHHHHHCCeEEEEEcCCCc---------ceEeecCCCcceEEEECCCCCEEEe
Confidence 44556789999999998988766554332 33333 345567999999997654
No 125
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=46.73 E-value=15 Score=33.06 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=11.8
Q ss_pred ceeeCCCCcccchhHH
Q psy16867 150 RVMCLGCDYEIDRHKF 165 (275)
Q Consensus 150 ~~~C~~C~~~~~~~~~ 165 (275)
+.+|++|++-.+..++
T Consensus 28 w~KCp~c~~~~y~~eL 43 (294)
T COG0777 28 WTKCPSCGEMLYRKEL 43 (294)
T ss_pred eeECCCccceeeHHHH
Confidence 4579999988776554
No 126
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=46.58 E-value=26 Score=28.95 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=27.4
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCC
Q psy16867 18 PKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIP 56 (275)
Q Consensus 18 ~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP 56 (275)
-.+.+....--++|++.++.++.++|+.|+- .|||
T Consensus 100 dPkG~~is~vk~~L~~~~r~~~eV~v~iGSR----eGiP 134 (173)
T PF14419_consen 100 DPKGDPISEVKDKLAEDLRYAKEVVVFIGSR----EGIP 134 (173)
T ss_pred CCCCCcHHHHHHHHHHHHhhCcEEEEEEEcc----cCCC
Confidence 3444555677789999999999999999986 4565
No 127
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=46.36 E-value=25 Score=34.77 Aligned_cols=43 Identities=5% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||+||+.+..... .....+.++|.||.++..+
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~ 311 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEI 311 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHh
Confidence 345678899999999999864311 1112246788998887644
No 128
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=46.29 E-value=24 Score=34.79 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---hhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---KEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r~~~~~~~v~iN~~~~~~~ 272 (275)
.+...+.++|+||.+|+++...... ....+.++|.||.++..+.
T Consensus 270 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~ 316 (564)
T PRK08155 270 STNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELG 316 (564)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhC
Confidence 3555778999999999998765321 1122467889998876654
No 129
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=46.15 E-value=9.2 Score=28.53 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.2
Q ss_pred hCCcEEEEeCcccccc
Q psy16867 37 KYNKILVVTGAGISTE 52 (275)
Q Consensus 37 ~a~~ivv~tGAGiS~~ 52 (275)
+.++|++.+|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3578999999999954
No 130
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=46.09 E-value=9.2 Score=35.95 Aligned_cols=9 Identities=33% Similarity=0.958 Sum_probs=7.2
Q ss_pred eeCCCCccc
Q psy16867 152 MCLGCDYEI 160 (275)
Q Consensus 152 ~C~~C~~~~ 160 (275)
+|.+|+++.
T Consensus 2 ~c~~cg~~~ 10 (372)
T cd01121 2 VCSECGYVS 10 (372)
T ss_pred CCCCCCCCC
Confidence 688888875
No 131
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.08 E-value=26 Score=35.01 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=29.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.+++||+||.||+++..... -....+..+|.||.++..+
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i 318 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSI 318 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHh
Confidence 455678899999999999865422 1112346788898877654
No 132
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=45.98 E-value=13 Score=31.16 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=35.2
Q ss_pred eecccEeEeCCC---CCHhHHHHHHHHhh---hCC---EE--EEEccCccchHHhhhccCcEEEE-------ecCCCCCC
Q psy16867 210 DLKPDIVFFGDN---IPRHRMEKIDHLVR---SCD---GV--LVLGSSLTVPILVKEHAKGYLGK-------GNVQTTPF 271 (275)
Q Consensus 210 ~lrP~vv~f~E~---~~~~~~~~~~~~~~---~~d---li--LvlGts~~v~~~~r~~~~~~~v~-------iN~~~~~~ 271 (275)
.|+|.|++|+|+ ++.++-....+.++ ... +| =+++..-.+.+-+-+..++.+|. -|++.+-|
T Consensus 157 mmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p~te~f 236 (242)
T COG4161 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAF 236 (242)
T ss_pred hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCccHHHH
Confidence 479999999997 45554444443333 222 22 23444444444444555666654 34554444
Q ss_pred CCCC
Q psy16867 272 SFLL 275 (275)
Q Consensus 272 ~~~~ 275 (275)
.+||
T Consensus 237 ~~yl 240 (242)
T COG4161 237 KNYL 240 (242)
T ss_pred HHHh
Confidence 4443
No 133
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=45.87 E-value=34 Score=33.89 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 22 PVEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 22 ~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.+....+++++++|++|++.+|+.|.|+..
T Consensus 204 ~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 204 APDPEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 355788999999999999999999999964
No 134
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=45.77 E-value=26 Score=34.40 Aligned_cols=44 Identities=14% Similarity=0.075 Sum_probs=29.0
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhhh--ccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVKE--HAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r~--~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.+++||+||++|+++.-...... ..+.++|.||.++..+.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 300 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWNSENDATIVHIDVEPAQID 300 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccCcCCCCeEEEEeCChHHcC
Confidence 345677899999999998753221111 11367888998877643
No 135
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.69 E-value=3.8 Score=33.53 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCccc
Q psy16867 110 YALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 110 ~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~ 160 (275)
+..++.+-. -+++|+++|.-.+.. .-.|++|+.+.
T Consensus 4 y~~aqiC~N---GH~~t~~~~~~p~~~-------------~~fC~kCG~~t 38 (158)
T PF10083_consen 4 YRIAQICLN---GHVITDSYDKNPELR-------------EKFCSKCGAKT 38 (158)
T ss_pred hhHHHHccC---ccccccccccCchHH-------------HHHHHHhhHHH
Confidence 344555433 367787777553332 34588898754
No 136
>PRK07524 hypothetical protein; Provisional
Probab=45.66 E-value=19 Score=35.23 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=29.5
Q ss_pred HHHHHHhhhCCEEEEEccCccchHH-----hhhccCcEEEEecCCCCCC
Q psy16867 228 EKIDHLVRSCDGVLVLGSSLTVPIL-----VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 228 ~~~~~~~~~~dliLvlGts~~v~~~-----~r~~~~~~~v~iN~~~~~~ 271 (275)
..+.+.+.++|+||++|+++..... -....+.++|.||.++..+
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 303 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQL 303 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHh
Confidence 4566778899999999998743211 1122246788888887644
No 137
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=45.64 E-value=7.7 Score=34.00 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=9.1
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
..+|++||+.+.
T Consensus 183 ~g~c~kcg~~~~ 194 (253)
T COG1933 183 DGKCPICGGKIV 194 (253)
T ss_pred cccccccCCeEE
Confidence 468999999543
No 138
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=45.36 E-value=28 Score=30.51 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHhC-CcEEEEeCcccccc
Q psy16867 24 EESDINKLKQFIEKY-NKILVVTGAGISTE 52 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a-~~ivv~tGAGiS~~ 52 (275)
....+..++++++.| ++|+|..|||+.+.
T Consensus 154 a~eg~~~l~~li~~a~gri~Im~GaGV~~~ 183 (241)
T COG3142 154 ALEGLDLLKRLIEQAKGRIIIMAGAGVRAE 183 (241)
T ss_pred hhhhHHHHHHHHHHhcCCEEEEeCCCCCHH
Confidence 346788999999887 79999999999864
No 139
>PRK05638 threonine synthase; Validated
Probab=45.12 E-value=12 Score=35.93 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=8.7
Q ss_pred eeeCCCCccc
Q psy16867 151 VMCLGCDYEI 160 (275)
Q Consensus 151 ~~C~~C~~~~ 160 (275)
++|..|++++
T Consensus 2 l~C~~Cg~~~ 11 (442)
T PRK05638 2 MKCPKCGREY 11 (442)
T ss_pred eEeCCCCCCC
Confidence 6899999986
No 140
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=44.95 E-value=8.5 Score=23.17 Aligned_cols=14 Identities=43% Similarity=0.949 Sum_probs=6.2
Q ss_pred CCCCCCCeecccEe
Q psy16867 203 QCPHCHGDLKPDIV 216 (275)
Q Consensus 203 ~Cp~Cgg~lrP~vv 216 (275)
.||.||+.|...|.
T Consensus 2 fC~~CG~~l~~~ip 15 (34)
T PF14803_consen 2 FCPQCGGPLERRIP 15 (34)
T ss_dssp B-TTT--B-EEE--
T ss_pred ccccccChhhhhcC
Confidence 49999999876554
No 141
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=44.61 E-value=10 Score=25.38 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=10.4
Q ss_pred CCCCCCCCCCeec
Q psy16867 200 HVPQCPHCHGDLK 212 (275)
Q Consensus 200 ~~P~Cp~Cgg~lr 212 (275)
.+-.||.||..++
T Consensus 21 eiV~Cp~CGaele 33 (54)
T TIGR01206 21 ELVICDECGAELE 33 (54)
T ss_pred CEEeCCCCCCEEE
Confidence 3568999998876
No 142
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=44.61 E-value=8.9 Score=23.15 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=9.8
Q ss_pred CCCCCCCeeccc
Q psy16867 203 QCPHCHGDLKPD 214 (275)
Q Consensus 203 ~Cp~Cgg~lrP~ 214 (275)
-||+||..|.|.
T Consensus 3 FCp~C~nlL~p~ 14 (35)
T PF02150_consen 3 FCPECGNLLYPK 14 (35)
T ss_dssp BETTTTSBEEEE
T ss_pred eCCCCCccceEc
Confidence 499999998764
No 143
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=44.41 E-value=27 Score=34.52 Aligned_cols=43 Identities=7% Similarity=0.086 Sum_probs=29.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||.||+.+.-... .....+.++|.||.++..+
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i 314 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEI 314 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHh
Confidence 455677899999999999864321 1122356889998887654
No 144
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.41 E-value=25 Score=34.86 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=30.1
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---hhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---KEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.+.++|+||.+|+++...... ....+.++|.||.++..+.
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~ 311 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASIS 311 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhC
Confidence 3455778999999999998764221 1223467889988776544
No 145
>PRK05978 hypothetical protein; Provisional
Probab=44.33 E-value=10 Score=30.88 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=12.4
Q ss_pred CCCCCCCCCeecccEeE
Q psy16867 201 VPQCPHCHGDLKPDIVF 217 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~ 217 (275)
.++|+.||..+...--.
T Consensus 52 ~~~C~~CG~~~~~~~a~ 68 (148)
T PRK05978 52 VDHCAACGEDFTHHRAD 68 (148)
T ss_pred CCCccccCCccccCCcc
Confidence 67899999887655433
No 146
>PLN02573 pyruvate decarboxylase
Probab=44.17 E-value=22 Score=35.39 Aligned_cols=43 Identities=16% Similarity=-0.029 Sum_probs=28.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---hhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---KEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||+||+++...... ....+.++|.||.++..+
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i 329 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTI 329 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEE
Confidence 3456678899999999988543211 112356788888877554
No 147
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=43.53 E-value=39 Score=33.30 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=28.8
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhh--ccCcEEEEecCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKE--HAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~--~~~~~~v~iN~~~~~~~ 272 (275)
+.+.++++|+||+||+.+....+... ..+.+++.|+.++..+.
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~~~~~~~~~i~id~d~~~~~ 324 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQWLADCEPEYWVVDPGPGRLD 324 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHHHhcCCCCEEEECCCCCcCC
Confidence 45667799999999999853222111 12348889998877654
No 148
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=43.32 E-value=26 Score=35.04 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=28.9
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---hhccCcEEEEecCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---KEHAKGYLGKGNVQTTP 270 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r~~~~~~~v~iN~~~~~ 270 (275)
.+.+.+.++|+||++|+++...... ....+..+|.||.++..
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~ 334 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAE 334 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHH
Confidence 4557788999999999998654221 11224678889888654
No 149
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=43.17 E-value=28 Score=34.43 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=28.7
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhh----ccCcEEEEecCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKE----HAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~----~~~~~~v~iN~~~~~~~ 272 (275)
+...+.+||+||.||+++........ +.+.+++.||.++..+.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 313 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGE 313 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhC
Confidence 44566789999999999864432111 11467888888876553
No 150
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=42.93 E-value=21 Score=32.54 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=11.9
Q ss_pred ceeeCCCCcccchhHH
Q psy16867 150 RVMCLGCDYEIDRHKF 165 (275)
Q Consensus 150 ~~~C~~C~~~~~~~~~ 165 (275)
+.+|.+|++..+..++
T Consensus 38 w~kc~~C~~~~~~~~l 53 (296)
T CHL00174 38 WVQCENCYGLNYKKFL 53 (296)
T ss_pred eeECCCccchhhHHHH
Confidence 5689999998765543
No 151
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=42.85 E-value=27 Score=34.62 Aligned_cols=43 Identities=16% Similarity=0.032 Sum_probs=29.2
Q ss_pred HHHHHhhhCCEEEEEccCccchHH------hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL------VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~------~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|++|+||+.+..... ...+.+.++|.|+.++..+
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~ 303 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMI 303 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHh
Confidence 455678899999999998853211 1123357889998876554
No 152
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=42.76 E-value=43 Score=33.54 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|++|++.||++|.|+.
T Consensus 209 ~~~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 209 GNPRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4567899999999999999999999986
No 153
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=42.10 E-value=27 Score=34.64 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=25.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCc
Q psy16867 16 FIPKHKPVEESDINKLKQFIEKYNKILVVTGA 47 (275)
Q Consensus 16 ~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGA 47 (275)
.+-++.|=.-+.+.-+++...++--+|++||-
T Consensus 68 ~~~tsGPGatN~~tgla~A~~d~~Pll~itGq 99 (550)
T COG0028 68 CLVTSGPGATNLLTGLADAYMDSVPLLAITGQ 99 (550)
T ss_pred EEECCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44556666678888889999888889999993
No 154
>PRK11823 DNA repair protein RadA; Provisional
Probab=42.03 E-value=14 Score=35.48 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=8.8
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
..+|..|+++.
T Consensus 7 ~y~C~~Cg~~~ 17 (446)
T PRK11823 7 AYVCQECGAES 17 (446)
T ss_pred eEECCcCCCCC
Confidence 46899999875
No 155
>PRK08617 acetolactate synthase; Reviewed
Probab=42.01 E-value=27 Score=34.40 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=28.8
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhh--ccCcEEEEecCCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKE--HAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~--~~~~~~v~iN~~~~~~~~ 273 (275)
+.+.+.++|+||.+|+++.-...... ..+.++|.|+.++..+..
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 307 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWNSEGDATIIHIDVLPAEIDN 307 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccccCCCCcEEEEeCChHHhCC
Confidence 44567899999999997643221111 124678889988776543
No 156
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.89 E-value=11 Score=28.69 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=11.9
Q ss_pred CcEEEEeCcccccc
Q psy16867 39 NKILVVTGAGISTE 52 (275)
Q Consensus 39 ~~ivv~tGAGiS~~ 52 (275)
++|++++|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 46999999999865
No 157
>PRK11269 glyoxylate carboligase; Provisional
Probab=41.06 E-value=28 Score=34.61 Aligned_cols=43 Identities=12% Similarity=-0.024 Sum_probs=29.1
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.+.++|+||++|+.+..... -....+.++|.|+.++..+
T Consensus 263 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~ 308 (591)
T PRK11269 263 YGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQI 308 (591)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHh
Confidence 345567899999999999865422 1122346788888876654
No 158
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=41.05 E-value=18 Score=28.42 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=8.1
Q ss_pred cceeeCCCCccc
Q psy16867 149 FRVMCLGCDYEI 160 (275)
Q Consensus 149 ~~~~C~~C~~~~ 160 (275)
...+| .|++.+
T Consensus 69 ~~~~C-~Cg~~~ 79 (124)
T PRK00762 69 VEIEC-ECGYEG 79 (124)
T ss_pred eeEEe-eCcCcc
Confidence 35679 999765
No 159
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=41.00 E-value=46 Score=31.68 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=28.7
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhh--ccCcEEEEecCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKE--HAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~--~~~~~~v~iN~~~~~~~ 272 (275)
+.+.+ ++|+||++|+.+....+... ..+.++|.|+.++..+.
T Consensus 269 ~~~~~-~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~ 312 (432)
T TIGR00173 269 LREEL-QPDLVIRFGGPPVSKRLRQWLARQPAEYWVVDPDPGWLD 312 (432)
T ss_pred hhhhC-CCCEEEEeCCCcchhHHHHHHhCCCCcEEEECCCCCccC
Confidence 33446 89999999999855432221 12468999999887665
No 160
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=40.94 E-value=22 Score=35.19 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=28.4
Q ss_pred HHHHhhhCCEEEEEccCccchHH-hhhccCcEEEEecCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPIL-VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~-~r~~~~~~~v~iN~~~~~~ 271 (275)
+.+.++++|+||+||+.+..... .....+.++|.||.++..+
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~vi~Id~d~~~~ 315 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKIRPDADARVIQIDVDPLKS 315 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccccCCCCCeEEEEeCChhhh
Confidence 45567899999999998754321 1122356888999887643
No 161
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=40.93 E-value=12 Score=21.94 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=7.8
Q ss_pred CCCCCCCCCeeccc
Q psy16867 201 VPQCPHCHGDLKPD 214 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~ 214 (275)
...|+.||+++++.
T Consensus 3 ~rfC~~CG~~t~~~ 16 (32)
T PF09297_consen 3 HRFCGRCGAPTKPA 16 (32)
T ss_dssp TSB-TTT--BEEE-
T ss_pred CcccCcCCccccCC
Confidence 45799999998754
No 162
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=40.84 E-value=14 Score=33.95 Aligned_cols=10 Identities=30% Similarity=0.714 Sum_probs=8.5
Q ss_pred CCCCCCCCCe
Q psy16867 201 VPQCPHCHGD 210 (275)
Q Consensus 201 ~P~Cp~Cgg~ 210 (275)
.+.||+||+.
T Consensus 368 ~~~c~~c~~~ 377 (389)
T PRK11788 368 YWHCPSCKAW 377 (389)
T ss_pred eeECcCCCCc
Confidence 7899999964
No 163
>PRK08329 threonine synthase; Validated
Probab=40.33 E-value=13 Score=34.45 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=8.9
Q ss_pred eeeCCCCcccc
Q psy16867 151 VMCLGCDYEID 161 (275)
Q Consensus 151 ~~C~~C~~~~~ 161 (275)
++|..|++++.
T Consensus 2 l~C~~Cg~~~~ 12 (347)
T PRK08329 2 LRCTKCGRTYE 12 (347)
T ss_pred cCcCCCCCCcC
Confidence 58999998873
No 164
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=40.20 E-value=17 Score=28.06 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.2
Q ss_pred CCCCCCCeecccE
Q psy16867 203 QCPHCHGDLKPDI 215 (275)
Q Consensus 203 ~Cp~Cgg~lrP~v 215 (275)
.|..|+.+|.-+-
T Consensus 87 ~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 87 ACMHCKEPLTLDP 99 (114)
T ss_pred ccCcCCCcCccCc
Confidence 7999999986443
No 165
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=40.18 E-value=23 Score=32.18 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=12.0
Q ss_pred ceeeCCCCcccchhHH
Q psy16867 150 RVMCLGCDYEIDRHKF 165 (275)
Q Consensus 150 ~~~C~~C~~~~~~~~~ 165 (275)
+.+|..|+...+..++
T Consensus 27 ~~~c~~c~~~~~~~~l 42 (292)
T PRK05654 27 WTKCPSCGQVLYRKEL 42 (292)
T ss_pred eeECCCccchhhHHHH
Confidence 6789999998765543
No 166
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=40.17 E-value=30 Score=34.11 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=28.6
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTP 270 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~ 270 (275)
.+.+.+.++|+||+||+.+..... -+...+.++|.||.++..
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 304 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAE 304 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHH
Confidence 345677899999999999865321 112235678889888643
No 167
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=40.16 E-value=29 Score=34.04 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=33.5
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccc------------cCCCCCccc
Q psy16867 18 PKHKPVEESDINKLKQFIEKYNKILVVTGAGIST------------ESGIPDYRS 60 (275)
Q Consensus 18 ~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~------------~sGiP~fr~ 60 (275)
++.++....-++.+.++|.++++.+|++|+.+|. +.|+|.|.-
T Consensus 189 ~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~ 243 (557)
T COG3961 189 TSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFPVATL 243 (557)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEe
Confidence 3444455678889999999999999999999984 356777754
No 168
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=39.99 E-value=17 Score=38.05 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=18.6
Q ss_pred CCCCCCCCCeecccEeEeCCCCC-HhHHHHHHHHhh
Q psy16867 201 VPQCPHCHGDLKPDIVFFGDNIP-RHRMEKIDHLVR 235 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~E~~~-~~~~~~~~~~~~ 235 (275)
..+||.||+...|.-.. .-.++ .+.+.+|.+.+.
T Consensus 637 k~rCP~CG~~Te~~~pc-~~~i~l~~~~~~A~~~lg 671 (1095)
T TIGR00354 637 WLKCPVCGELTEQLYYG-KRKVDLRELYEEAIANLG 671 (1095)
T ss_pred cccCCCCCCccccccce-eEEecHHHHHHHHHHHhC
Confidence 46899999886544333 11233 234555555553
No 169
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=39.96 E-value=26 Score=31.77 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=12.1
Q ss_pred ceeeCCCCcccchhHH
Q psy16867 150 RVMCLGCDYEIDRHKF 165 (275)
Q Consensus 150 ~~~C~~C~~~~~~~~~ 165 (275)
+.+|..|+...+..++
T Consensus 26 ~~~c~~c~~~~~~~~l 41 (285)
T TIGR00515 26 WTKCPKCGQVLYTKEL 41 (285)
T ss_pred eeECCCCcchhhHHHH
Confidence 6789999998765543
No 170
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=39.90 E-value=40 Score=25.49 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=21.3
Q ss_pred HHHHHHHh--CCcEEEEeCc------cccc---cCCCCCcccCCCc
Q psy16867 30 KLKQFIEK--YNKILVVTGA------GIST---ESGIPDYRSEGVG 64 (275)
Q Consensus 30 ~l~~~l~~--a~~ivv~tGA------GiS~---~sGiP~fr~~~~g 64 (275)
+++++..+ +.++||+.|| |+.+ ..|=|||.|+-.|
T Consensus 8 rvk~~aek~g~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGPLaG 53 (107)
T PRK14717 8 RIKELAEKYGAENIVVILGAAEAEAAGLAAETVTNGDPTFAGPLAG 53 (107)
T ss_pred HHHHHHHhcCCccEEEEecCcchhhccceeeeeccCCCcccccccc
Confidence 44444433 5688888886 4442 3566999887434
No 171
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=39.76 E-value=31 Score=34.14 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=29.2
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTP 270 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~ 270 (275)
.+.+.+.++|+||++|+.+..... .....+.++|.||.++..
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 321 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEE 321 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccccCCCCeEEEEECChHH
Confidence 456678899999999998865321 112234688999887744
No 172
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=39.69 E-value=35 Score=33.73 Aligned_cols=43 Identities=7% Similarity=0.174 Sum_probs=28.7
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||.+|+.+..... -....+.+++.|+.++..+
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i 319 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEI 319 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHh
Confidence 355667899999999999865421 1112246788888887543
No 173
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=39.34 E-value=36 Score=33.80 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=29.2
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.+.++|+||.||+.+.-... -....+.++|.||.++..+
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 307 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEI 307 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHh
Confidence 455677899999999999864321 1112246788888877544
No 174
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.85 E-value=17 Score=35.55 Aligned_cols=16 Identities=25% Similarity=0.775 Sum_probs=10.8
Q ss_pred cccccceeeCCCCccc
Q psy16867 145 HGTAFRVMCLGCDYEI 160 (275)
Q Consensus 145 HG~~~~~~C~~C~~~~ 160 (275)
-|-...+.|..|+...
T Consensus 208 rGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 208 RGYSKNLLCRSCGYIL 223 (505)
T ss_pred CcCCCeeEhhhCcCcc
Confidence 4666667777777754
No 175
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=38.83 E-value=16 Score=35.33 Aligned_cols=11 Identities=18% Similarity=0.703 Sum_probs=8.6
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
..+|..|+++.
T Consensus 7 ~y~C~~Cg~~~ 17 (454)
T TIGR00416 7 KFVCQHCGADS 17 (454)
T ss_pred eEECCcCCCCC
Confidence 46899998875
No 176
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=38.74 E-value=32 Score=36.55 Aligned_cols=41 Identities=22% Similarity=0.493 Sum_probs=25.6
Q ss_pred CCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccch
Q psy16867 201 VPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP 250 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~ 250 (275)
...||.||+.- |. + -....+...+....+|-|| |||..-+-
T Consensus 708 ~~~cP~Cgs~~---v~---d--~~~~ve~lRelA~EvDeVl-IgTDPDtE 748 (1187)
T COG1110 708 EDKCPRCGSRN---VE---D--KTETVEALRELALEVDEIL-IGTDPDTE 748 (1187)
T ss_pred cccCCCCCCcc---cc---c--cHHHHHHHHHHHhhcCEEE-EcCCCCCc
Confidence 45899999852 11 1 1234666666677888764 68876653
No 177
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.53 E-value=17 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCccccccCC
Q psy16867 27 DINKLKQFIEKYNKILVVTGAGISTESG 54 (275)
Q Consensus 27 ~l~~l~~~l~~a~~ivv~tGAGiS~~sG 54 (275)
.++++++.|.++++ |++.|.|-|...+
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a 28 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHH
Confidence 58899999999976 6778888876654
No 178
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.50 E-value=37 Score=25.63 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEec--ccccceeeCCCCcccc
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEID 161 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~ 161 (275)
...++..|+.|..|.+.|.+..+-..|- ...|++. ..-.++.|..|++...
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~~---------~~~y~~~~~~~h~H~~C~~Cg~i~~ 84 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGDG---------KARYELNTDEHHHHLICTKCGKVID 84 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCCC---------ceEEEeCCCCCCCceEeCCCCCEEE
Confidence 5577888999999999888876655442 1233321 2234799999999764
No 179
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=38.38 E-value=11 Score=31.82 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=9.0
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
..+|+.|+...
T Consensus 149 ~A~CsrC~~~L 159 (188)
T COG1096 149 YARCSRCRAPL 159 (188)
T ss_pred EEEccCCCcce
Confidence 56899999875
No 180
>KOG4718|consensus
Probab=38.35 E-value=23 Score=30.58 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=8.6
Q ss_pred CCCCCCCCCee
Q psy16867 201 VPQCPHCHGDL 211 (275)
Q Consensus 201 ~P~Cp~Cgg~l 211 (275)
.|.||+||...
T Consensus 216 ~~~cphc~d~w 226 (235)
T KOG4718|consen 216 RDICPHCGDLW 226 (235)
T ss_pred cCcCCchhccc
Confidence 78999997543
No 181
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=38.13 E-value=18 Score=27.54 Aligned_cols=14 Identities=57% Similarity=0.800 Sum_probs=12.0
Q ss_pred CcEEEEeCcccccc
Q psy16867 39 NKILVVTGAGISTE 52 (275)
Q Consensus 39 ~~ivv~tGAGiS~~ 52 (275)
++|+++++||+|++
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 57999999999964
No 182
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=38.06 E-value=31 Score=28.50 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCcEEEEeCcccc
Q psy16867 28 INKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 28 l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
=+.++++|++|++.+|+.|.|+.
T Consensus 17 p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 17 PKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred HHHHHHHHHcCCCcEEEECCCcC
Confidence 47889999999999999999986
No 183
>PRK07524 hypothetical protein; Provisional
Probab=38.04 E-value=40 Score=32.98 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....++++.++|.+|++.+|++|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 186 PAPAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCChH
Confidence 4567899999999999999999999985
No 184
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=37.97 E-value=36 Score=33.57 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHHhhhCCEEEEEccCccchHH-----hh-hccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL-----VK-EHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~-----~r-~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.++++|+||.+|+++..... .. ...+.+++.|+.++..+.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~ 312 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELG 312 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhC
Confidence 345677899999999998754321 11 112467888888776543
No 185
>PRK12352 putative carbamate kinase; Reviewed
Probab=37.80 E-value=36 Score=31.29 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=33.4
Q ss_pred CccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCC
Q psy16867 13 SISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEG 62 (275)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~ 62 (275)
-.|.+|+..|+..-+.+.+..+|. ++.|||.+|.| |||...+..
T Consensus 161 ~rrvv~sp~pv~~V~~~~I~~ll~-~g~iVi~~ggg-----giPv~~~~~ 204 (316)
T PRK12352 161 YRRVVASPEPKRIVEAPAIKALIQ-QGFVVIGAGGG-----GIPVVRTDA 204 (316)
T ss_pred eEEecCCCCCceEEcHHHHHHHHH-CCCEEEecCCC-----CCCEEeCCC
Confidence 357888888888878877777776 67788888776 788766544
No 186
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=37.76 E-value=35 Score=33.16 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.3
Q ss_pred eEEecccccceeeCCCCcccc
Q psy16867 141 VIEMHGTAFRVMCLGCDYEID 161 (275)
Q Consensus 141 v~elHG~~~~~~C~~C~~~~~ 161 (275)
+..--+.....+|..|++.|+
T Consensus 416 ~~~~~~~~~~~~c~~c~~~yd 436 (479)
T PRK05452 416 ATTTADLGPRMQCSVCQWIYD 436 (479)
T ss_pred cccccCCCCeEEECCCCeEEC
Confidence 445556777889999999885
No 187
>PRK08266 hypothetical protein; Provisional
Probab=37.70 E-value=29 Score=34.01 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=28.4
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhh---ccCcEEEEecCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKE---HAKGYLGKGNVQTTPF 271 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~---~~~~~~v~iN~~~~~~ 271 (275)
+.+.+.++|+||.+|+++... .... +.+.+++.||.++..+
T Consensus 257 ~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~ 300 (542)
T PRK08266 257 AYELWPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEM 300 (542)
T ss_pred HHHHHHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHh
Confidence 445778999999999998765 2222 2246788888776543
No 188
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=37.24 E-value=33 Score=34.02 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=26.3
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhhh-ccCcEEEEecCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVKE-HAKGYLGKGNVQTTP 270 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r~-~~~~~~v~iN~~~~~ 270 (275)
.+.+.++++|++|++|+++....+-.. ..+..+|.||.++..
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~I~id~d~~~ 299 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPFAEVSKAFKNTKYFIQIDIDPAK 299 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccccccCCCceEEEEeCCHHH
Confidence 345677899999999998754322111 112345788876543
No 189
>PRK07586 hypothetical protein; Validated
Probab=37.17 E-value=43 Score=32.59 Aligned_cols=30 Identities=7% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 22 PVEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 22 ~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.+....+++++++|.+|++-||++|.|+..
T Consensus 181 ~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~ 210 (514)
T PRK07586 181 AVDPAAVEAAAAALRSGEPTVLLLGGRALR 210 (514)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 345688999999999999999999999964
No 190
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=36.90 E-value=18 Score=24.41 Aligned_cols=12 Identities=42% Similarity=1.018 Sum_probs=9.8
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
.-.||.|||.|.
T Consensus 41 ~~~CPNCgGelv 52 (57)
T PF06906_consen 41 NGVCPNCGGELV 52 (57)
T ss_pred cCcCcCCCCccc
Confidence 468999999874
No 191
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=36.68 E-value=28 Score=37.98 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=17.7
Q ss_pred CCCCCCCCCeecccEeEeCCCCC-HhHHHHHHHHhh
Q psy16867 201 VPQCPHCHGDLKPDIVFFGDNIP-RHRMEKIDHLVR 235 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~E~~~-~~~~~~~~~~~~ 235 (275)
..+||.||+.....-.-- -.++ .+.+.+|.+.+.
T Consensus 686 ~~~Cp~CG~~~~~~~~~~-~~i~~~~~~~~A~~~v~ 720 (1627)
T PRK14715 686 YHVCPFCGTRVELKPYAR-REIPPKDYWYAALENLK 720 (1627)
T ss_pred cccCcccCCcccCCCccc-eecCHHHHHHHHHHHhC
Confidence 578999998743222111 1233 234555655553
No 192
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=36.58 E-value=16 Score=26.23 Aligned_cols=13 Identities=69% Similarity=0.997 Sum_probs=10.7
Q ss_pred cEEEEeCcccccc
Q psy16867 40 KILVVTGAGISTE 52 (275)
Q Consensus 40 ~ivv~tGAGiS~~ 52 (275)
+|++.+|+|+|++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 4788999999875
No 193
>PRK02935 hypothetical protein; Provisional
Probab=36.51 E-value=27 Score=26.69 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=12.3
Q ss_pred CCCCCCCCCeecccEeE
Q psy16867 201 VPQCPHCHGDLKPDIVF 217 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~ 217 (275)
.-.|..|+.+|+-+--+
T Consensus 86 vD~CM~C~~PLTLd~~l 102 (110)
T PRK02935 86 VDACMHCNQPLTLDRSL 102 (110)
T ss_pred eeecCcCCCcCCcCccc
Confidence 34799999998755443
No 194
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=36.38 E-value=17 Score=27.06 Aligned_cols=13 Identities=62% Similarity=0.838 Sum_probs=11.1
Q ss_pred cEEEEeCcccccc
Q psy16867 40 KILVVTGAGISTE 52 (275)
Q Consensus 40 ~ivv~tGAGiS~~ 52 (275)
+|++.+|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4889999999875
No 195
>PRK10996 thioredoxin 2; Provisional
Probab=36.37 E-value=1.6e+02 Score=23.16 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=33.7
Q ss_pred CCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhh-hCCEEEEEccCccch---------HHhhhcc-CcEEEEecCCC
Q psy16867 201 VPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVR-SCDGVLVLGSSLTVP---------ILVKEHA-KGYLGKGNVQT 268 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~-~~dliLvlGts~~v~---------~~~r~~~-~~~~v~iN~~~ 268 (275)
-..|+.|+..+-...++- .....++++ ++ ..-++|.+.++.-.+ .++++.. +..++.+|.+.
T Consensus 22 ~~~~~~~~~~~~~~~~i~---~~~~~~~~~---i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~ 94 (139)
T PRK10996 22 AAKCGRCGHDLFDGEVIN---ATGETLDKL---LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA 94 (139)
T ss_pred CCcCCCCCCccCCCCCEE---cCHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 567999987766554432 223334433 22 344777787777665 1233322 35566777654
No 196
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=36.30 E-value=44 Score=33.15 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+..+.+++++++|++|++.+|++|.|+.
T Consensus 185 ~~~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 185 PDVEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchh
Confidence 4567899999999999999999999996
No 197
>PRK14873 primosome assembly protein PriA; Provisional
Probab=35.95 E-value=18 Score=36.76 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=13.9
Q ss_pred cccccceeeCCCCcccc
Q psy16867 145 HGTAFRVMCLGCDYEID 161 (275)
Q Consensus 145 HG~~~~~~C~~C~~~~~ 161 (275)
-|-...+.|..|++...
T Consensus 378 rGyap~l~C~~Cg~~~~ 394 (665)
T PRK14873 378 RGYVPSLACARCRTPAR 394 (665)
T ss_pred CCCCCeeEhhhCcCeeE
Confidence 57777889999999764
No 198
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=35.70 E-value=48 Score=33.02 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|++|++.+|++|.|+.
T Consensus 193 ~~~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 193 PYDEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECcchH
Confidence 4567899999999999999999999985
No 199
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=35.47 E-value=47 Score=32.99 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|.+|++.+|++|.|+.
T Consensus 202 ~~~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 202 PTIKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 4567899999999999999999999995
No 200
>PRK12354 carbamate kinase; Reviewed
Probab=35.04 E-value=45 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=31.3
Q ss_pred CccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCC
Q psy16867 13 SISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEG 62 (275)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~ 62 (275)
.+|.+|+..|..--.++.+..+|+ ++.|+|.+|.| |||-..+.+
T Consensus 150 ~rrVv~SP~P~~ive~~~I~~Ll~-~g~ivIa~GGG-----GIPV~~~~~ 193 (307)
T PRK12354 150 FRRVVPSPRPKRIVEIRPIRWLLE-KGHLVICAGGG-----GIPVVYDAD 193 (307)
T ss_pred eEEEecCCCCcceeCHHHHHHHHH-CCCEEEEeCCC-----ccCeEecCC
Confidence 456777776666566777776665 67889988887 888776553
No 201
>PRK09411 carbamate kinase; Reviewed
Probab=34.76 E-value=43 Score=30.52 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=32.8
Q ss_pred CCccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccC
Q psy16867 12 RSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSE 61 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~ 61 (275)
-.+|.+|+..|..--+.+.++.+|+ ++.|||.+|.| |||.-.+.
T Consensus 150 g~rrVVpSP~P~~iVe~~~I~~Ll~-~G~IVI~~gGG-----GIPV~~~~ 193 (297)
T PRK09411 150 YLRRVVASPQPRKILDSEAIELLLK-EGHVVICSGGG-----GVPVTEDG 193 (297)
T ss_pred ceEEEccCCCCcceECHHHHHHHHH-CCCEEEecCCC-----CCCeEEcC
Confidence 3567888888887777887777776 67888888877 77766543
No 202
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.59 E-value=53 Score=32.79 Aligned_cols=29 Identities=10% Similarity=0.334 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.....++++.++|.+|++.+|++|.|+..
T Consensus 197 ~~~~~l~~a~~~L~~A~rPvil~G~g~~~ 225 (595)
T PRK09107 197 GDAEAITEAVELLANAKRPVIYSGGGVIN 225 (595)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCcccc
Confidence 45678999999999999999999999853
No 203
>PRK13796 GTPase YqeH; Provisional
Probab=34.54 E-value=85 Score=29.29 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=22.4
Q ss_pred CCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCC--EEEEEc
Q psy16867 201 VPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCD--GVLVLG 244 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~d--liLvlG 244 (275)
...|.+|.....-+.+. ...++++.+.+..+.+..+| ++.++-
T Consensus 34 ~~~C~RC~~l~hy~~~~-~~~~~~~~~~~~l~~i~~~~~lIv~VVD 78 (365)
T PRK13796 34 EVYCQRCFRLKHYNEIQ-DVSLTDDDFLKLLNGIGDSDALVVNVVD 78 (365)
T ss_pred CeEchhhhhhhccCccc-CCCCCHHHHHHHHHhhcccCcEEEEEEE
Confidence 56899997554422111 11245555655666666555 344444
No 204
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=34.46 E-value=24 Score=29.27 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=9.3
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
.++|..||+..
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 68899999865
No 205
>PRK06154 hypothetical protein; Provisional
Probab=34.44 E-value=52 Score=32.61 Aligned_cols=31 Identities=6% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 22 PVEESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 22 ~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
.+....+++++++|.+|++-+|++|.|+..+
T Consensus 198 ~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 198 GADPVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 3456789999999999999999999999743
No 206
>PRK05858 hypothetical protein; Provisional
Probab=34.43 E-value=74 Score=31.24 Aligned_cols=30 Identities=3% Similarity=0.209 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 22 PVEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 22 ~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.+....+++++++|.+|++.+|++|.|+..
T Consensus 187 ~~~~~~i~~~~~~L~~AkrPvil~G~g~~~ 216 (542)
T PRK05858 187 TPDPDALARAAGLLAEAQRPVIMAGTDVWW 216 (542)
T ss_pred CCCHHHHHHHHHHHHhCCCcEEEECCCccc
Confidence 345678999999999999999999999853
No 207
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=34.28 E-value=54 Score=32.68 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.....+++++++|.+|++.+|++|.|+..
T Consensus 187 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 187 ATRAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 35678999999999999999999999974
No 208
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=34.27 E-value=27 Score=27.22 Aligned_cols=8 Identities=38% Similarity=1.161 Sum_probs=6.5
Q ss_pred CCCCCCCe
Q psy16867 203 QCPHCHGD 210 (275)
Q Consensus 203 ~Cp~Cgg~ 210 (275)
.||+||+.
T Consensus 88 ~CP~C~s~ 95 (115)
T COG0375 88 RCPKCGSI 95 (115)
T ss_pred ECCCCCCC
Confidence 49999965
No 209
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.24 E-value=26 Score=26.71 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=12.8
Q ss_pred CCCCCCCCCCeecccEe
Q psy16867 200 HVPQCPHCHGDLKPDIV 216 (275)
Q Consensus 200 ~~P~Cp~Cgg~lrP~vv 216 (275)
....||+||..+.+-.+
T Consensus 48 G~t~CP~Cg~~~e~~fv 64 (115)
T COG1885 48 GSTSCPKCGEPFESAFV 64 (115)
T ss_pred ccccCCCCCCccceeEE
Confidence 35789999988776543
No 210
>PRK07064 hypothetical protein; Provisional
Probab=34.14 E-value=46 Score=32.62 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhhh--ccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVKE--HAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r~--~~~~~~v~iN~~~~~~ 271 (275)
.+.+.++++|+||.||+.+........ ..+..++.||.++..+
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 301 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYSLALPRPLIRVDADAAAD 301 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccccCCCCceEEEeCCHHHh
Confidence 456677899999999998865432111 1134678888776544
No 211
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=33.97 E-value=54 Score=30.04 Aligned_cols=43 Identities=28% Similarity=0.569 Sum_probs=31.5
Q ss_pred CccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccC
Q psy16867 13 SISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSE 61 (275)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~ 61 (275)
-+|.+|+..|..=-+.+.+..+|+ .+.|+|++|-| |+|.+...
T Consensus 156 ~rrvV~SP~P~~iv~~~~I~~Ll~-~g~IpI~~Ggg-----GiPv~~~~ 198 (308)
T cd04235 156 YRRVVPSPKPKDIVEIEAIKTLVD-NGVIVIAAGGG-----GIPVVREG 198 (308)
T ss_pred ceeeeCCCCCccccCHHHHHHHHH-CCCEEEEECCC-----ccCEEEcC
Confidence 356888888777666666666665 78888988876 88888754
No 212
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=33.52 E-value=29 Score=26.19 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=14.9
Q ss_pred CCCCCCCCCeecccEeEeC
Q psy16867 201 VPQCPHCHGDLKPDIVFFG 219 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~ 219 (275)
.-.||.||..+.|..+.-+
T Consensus 47 ~~~cP~Cge~~~~a~vva~ 65 (102)
T PF04475_consen 47 DTICPKCGEELDSAFVVAD 65 (102)
T ss_pred cccCCCCCCccCceEEEec
Confidence 5689999999988775433
No 213
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=33.36 E-value=63 Score=31.51 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHHhhhCCEEEEEccCccch----HHhhhccCcEEEEecCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVP----ILVKEHAKGYLGKGNVQT 268 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~----~~~r~~~~~~~v~iN~~~ 268 (275)
++.+...+|||||=|||-++-- .....+++.+++.+|.++
T Consensus 288 AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~~~k~l~lNV~~ 331 (617)
T COG3962 288 AANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQP 331 (617)
T ss_pred HHHhhhhhcCEEEEecccccccccccHHHhcCCCceEEEeeccc
Confidence 4566777899999999988753 234445568898899875
No 214
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=33.35 E-value=23 Score=38.07 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGA 47 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGA 47 (275)
....++.+.++-++.+.+|+.||.
T Consensus 714 l~~~~k~li~~g~~l~K~Vvatgn 737 (1444)
T COG2176 714 LKEIIKKLIKLGKKLNKPVVATGN 737 (1444)
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCC
Confidence 345566666666778889998886
No 215
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=33.22 E-value=56 Score=32.37 Aligned_cols=29 Identities=7% Similarity=0.291 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.....+++++++|.+|++.+|++|.|+..
T Consensus 181 ~~~~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 181 GGATSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 35678999999999999999999999964
No 216
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=33.07 E-value=37 Score=33.36 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=26.8
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTP 270 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~ 270 (275)
.+.+.++++|+||+||+.+..... ........+|.||.++..
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~ 309 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAAR 309 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeeccCCcccEEEEcCCeEE
Confidence 455677899999999998764221 111112467888876544
No 217
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=32.90 E-value=57 Score=31.96 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|.+|++.+|++|.|+..
T Consensus 180 ~~~~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 180 APDDAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 34568999999999999999999999964
No 218
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=32.76 E-value=64 Score=31.93 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|.+|++.+|++|.|+..
T Consensus 195 ~~~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 195 PNDMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 34678999999999999999999999963
No 219
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.68 E-value=44 Score=31.42 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=20.9
Q ss_pred CCCCCCCCCeecc-cEeEeCCCCCHhHHHHHHH
Q psy16867 201 VPQCPHCHGDLKP-DIVFFGDNIPRHRMEKIDH 232 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP-~vv~f~E~~~~~~~~~~~~ 232 (275)
-.+||+||+.+.- .-+|.|.-.+.+..++..+
T Consensus 257 ~~~c~~Cg~~~~~~GPlW~GpL~d~~f~e~~l~ 289 (380)
T COG1867 257 DEKCPHCGGKVHLAGPLWLGPLHDEEFIEEMLE 289 (380)
T ss_pred cccCCcccccceeccCcccCcccCHHHHHHHHH
Confidence 4689999996652 3477777666665554433
No 220
>KOG3035|consensus
Probab=32.55 E-value=29 Score=30.20 Aligned_cols=16 Identities=50% Similarity=1.101 Sum_probs=13.3
Q ss_pred CeecccEeEeCCCCCH
Q psy16867 209 GDLKPDIVFFGDNIPR 224 (275)
Q Consensus 209 g~lrP~vv~f~E~~~~ 224 (275)
|.+||.+++||+++-+
T Consensus 3 g~~rp~i~LFGdSItq 18 (245)
T KOG3035|consen 3 GPMRPRIVLFGDSITQ 18 (245)
T ss_pred CcccccEEEecchhhh
Confidence 3489999999998765
No 221
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=32.41 E-value=56 Score=32.29 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|.+|++.+|++|.|+-.
T Consensus 198 ~~~~~l~~~~~~L~~AkrPvIi~G~g~~~ 226 (569)
T PRK09259 198 PAPEAVDRALDLLKKAKRPLIILGKGAAY 226 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 34678999999999999999999999963
No 222
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.32 E-value=51 Score=32.63 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
.....++++.++|.+|++.+|++|.|+..+
T Consensus 191 ~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 191 GHKGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 356789999999999999999999999644
No 223
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.13 E-value=64 Score=32.08 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
....+++++++|++|++.||++|.|+..
T Consensus 207 ~~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 207 HSGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 5678999999999999999999999963
No 224
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=32.03 E-value=62 Score=32.36 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|.+|++.+|++|.|+..
T Consensus 216 p~~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 216 PHGKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 35678999999999999999999999953
No 225
>PRK11269 glyoxylate carboligase; Provisional
Probab=31.99 E-value=61 Score=32.25 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|++|++.+|++|.|+..
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~~ 216 (591)
T PRK11269 188 ATRAQIEKALEMLNAAERPLIVAGGGVIN 216 (591)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCcc
Confidence 35678999999999999999999999863
No 226
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=31.93 E-value=62 Score=30.81 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc-----------cCCCCCcccC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST-----------ESGIPDYRSE 61 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~-----------~sGiP~fr~~ 61 (275)
+....++++++.|++|++.+|++|.|+.. ..|+|.+.+.
T Consensus 196 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~ 245 (432)
T TIGR00173 196 LDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADP 245 (432)
T ss_pred CChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeC
Confidence 34567999999999999999999999863 2467777543
No 227
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.92 E-value=63 Score=32.05 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|.+|++.+|++|.|+..
T Consensus 199 ~~~~~~~~~~~~L~~A~rPvIl~G~g~~~ 227 (570)
T PRK06725 199 PDSMKLREVAKAISKAKRPLLYIGGGVIH 227 (570)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCccc
Confidence 45678999999999999999999999964
No 228
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.85 E-value=21 Score=25.74 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=8.6
Q ss_pred CCCCCCCCCCe
Q psy16867 200 HVPQCPHCHGD 210 (275)
Q Consensus 200 ~~P~Cp~Cgg~ 210 (275)
.+-.||+|+|.
T Consensus 20 EiD~CPrCrGV 30 (88)
T COG3809 20 EIDYCPRCRGV 30 (88)
T ss_pred eeeeCCccccE
Confidence 46789999875
No 229
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=31.63 E-value=29 Score=35.60 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=10.4
Q ss_pred ccCCCCCCCCCCCe
Q psy16867 197 SKFHVPQCPHCHGD 210 (275)
Q Consensus 197 ~~~~~P~Cp~Cgg~ 210 (275)
......+|..||..
T Consensus 458 ~~~~~L~CH~Cg~~ 471 (730)
T COG1198 458 KATGQLRCHYCGYQ 471 (730)
T ss_pred cCCCeeEeCCCCCC
Confidence 33457899999976
No 230
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=31.49 E-value=18 Score=23.99 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=8.1
Q ss_pred ccCCCCCCCCCCCeec
Q psy16867 197 SKFHVPQCPHCHGDLK 212 (275)
Q Consensus 197 ~~~~~P~Cp~Cgg~lr 212 (275)
.+...+.||.|+..++
T Consensus 20 ~S~~PatCP~C~a~~~ 35 (54)
T PF09237_consen 20 QSEQPATCPICGAVIR 35 (54)
T ss_dssp TTS--EE-TTT--EES
T ss_pred ccCCCCCCCcchhhcc
Confidence 3445789999998775
No 231
>KOG4166|consensus
Probab=31.33 E-value=60 Score=31.32 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCccccccCCCC
Q psy16867 25 ESDINKLKQFIEKYNKILVVTGAGISTESGIP 56 (275)
Q Consensus 25 ~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP 56 (275)
+..|++++++|+.||+-|++.|+|+=..+--|
T Consensus 285 ~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p 316 (675)
T KOG4166|consen 285 MSHIEQIARLISLAKKPVLYVGGGCLNSSDGP 316 (675)
T ss_pred HHHHHHHHHHHHhccCceEEeCcccccCCcch
Confidence 47899999999999999999999998776533
No 232
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=31.25 E-value=23 Score=26.99 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=12.0
Q ss_pred CcEEEEeCcccccc
Q psy16867 39 NKILVVTGAGISTE 52 (275)
Q Consensus 39 ~~ivv~tGAGiS~~ 52 (275)
++|++.+|+|+|++
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 47999999999964
No 233
>PRK08611 pyruvate oxidase; Provisional
Probab=31.17 E-value=85 Score=31.13 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+..+.+++++++|++|++.||++|.|+.
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 188 PKPKDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcCcc
Confidence 4557899999999999999999999985
No 234
>PRK10220 hypothetical protein; Provisional
Probab=31.05 E-value=23 Score=27.25 Aligned_cols=15 Identities=20% Similarity=0.545 Sum_probs=11.9
Q ss_pred CCCCCCCCCeecccE
Q psy16867 201 VPQCPHCHGDLKPDI 215 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~v 215 (275)
+-.||.|+....|.-
T Consensus 20 ~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 20 MYICPECAHEWNDAE 34 (111)
T ss_pred eEECCcccCcCCccc
Confidence 568999998887763
No 235
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=30.99 E-value=63 Score=31.62 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....++++.++|.+|++.+|++|.|..
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 191 PDPAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4567899999999999999999999985
No 236
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=30.97 E-value=22 Score=28.51 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=11.3
Q ss_pred cccceeeCCCCcccc
Q psy16867 147 TAFRVMCLGCDYEID 161 (275)
Q Consensus 147 ~~~~~~C~~C~~~~~ 161 (275)
.-....|..|+..+.
T Consensus 120 ~~~~~~C~~C~~~~~ 134 (157)
T PF10263_consen 120 KKYVYRCPSCGREYK 134 (157)
T ss_pred cceEEEcCCCCCEee
Confidence 445788999998764
No 237
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=30.90 E-value=28 Score=30.11 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCccccccCCC
Q psy16867 26 SDINKLKQFIEKYNKILVVTGAGISTESGI 55 (275)
Q Consensus 26 ~~l~~l~~~l~~a~~ivv~tGAGiS~~sGi 55 (275)
..|..+.++++.-=.|||--|||.|..||-
T Consensus 113 knIk~~eDll~~gi~ivV~dGaG~sntsgt 142 (252)
T COG4588 113 KNIKGFEDLLKPGIGIVVNDGAGVSNTSGT 142 (252)
T ss_pred cccccHHHHhcCCceEEEeCCCcccCCCCc
Confidence 468889999999899999999999999986
No 238
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=30.77 E-value=64 Score=31.90 Aligned_cols=28 Identities=11% Similarity=0.418 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|.+|++.+|++|.|+.
T Consensus 192 ~~~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 192 IDRLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 4567899999999999999999999995
No 239
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=30.67 E-value=29 Score=21.43 Aligned_cols=13 Identities=38% Similarity=1.035 Sum_probs=9.6
Q ss_pred CCCCCCCeecccE
Q psy16867 203 QCPHCHGDLKPDI 215 (275)
Q Consensus 203 ~Cp~Cgg~lrP~v 215 (275)
.||+|+..|.+..
T Consensus 1 ~CP~C~~~l~~~~ 13 (41)
T PF13453_consen 1 KCPRCGTELEPVR 13 (41)
T ss_pred CcCCCCcccceEE
Confidence 4899988877544
No 240
>PRK07064 hypothetical protein; Provisional
Probab=30.65 E-value=61 Score=31.74 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....++++.++|.+|++.+|++|.|+.
T Consensus 188 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 188 PDAAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCChH
Confidence 4567899999999999999999999984
No 241
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=30.64 E-value=49 Score=32.55 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=26.8
Q ss_pred HHHHHhhhCCEEEEEccCccchHHhh---hccCcEEEEecCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILVK---EHAKGYLGKGNVQTTP 270 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~r---~~~~~~~v~iN~~~~~ 270 (275)
.+.+.++++|++|.||+++.-..... ...+.++|.|+.++..
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~ 305 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVT 305 (535)
T ss_pred HHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEE
Confidence 44567789999999999986532210 1124577777765443
No 242
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=30.56 E-value=36 Score=34.45 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=5.4
Q ss_pred eeCCCCccc
Q psy16867 152 MCLGCDYEI 160 (275)
Q Consensus 152 ~C~~C~~~~ 160 (275)
.|..|+...
T Consensus 3 ~Cp~Cg~~n 11 (645)
T PRK14559 3 ICPQCQFEN 11 (645)
T ss_pred cCCCCCCcC
Confidence 566666653
No 243
>PRK08617 acetolactate synthase; Reviewed
Probab=30.55 E-value=63 Score=31.75 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|.+|++.+|++|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 186 ASPEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3456899999999999999999999985
No 244
>PRK03922 hypothetical protein; Provisional
Probab=30.52 E-value=33 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.583 Sum_probs=14.8
Q ss_pred CCCCCCCCCeecccEeEeC
Q psy16867 201 VPQCPHCHGDLKPDIVFFG 219 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~ 219 (275)
.-.||.||..+.|..+.-+
T Consensus 49 ~~~cP~cge~~~~afvvA~ 67 (113)
T PRK03922 49 LTICPKCGEPFDSAFVVAD 67 (113)
T ss_pred cccCCCCCCcCCcEEEEec
Confidence 5689999999988775433
No 245
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=30.43 E-value=22 Score=20.29 Aligned_cols=10 Identities=40% Similarity=1.012 Sum_probs=5.4
Q ss_pred CCCCCCCeec
Q psy16867 203 QCPHCHGDLK 212 (275)
Q Consensus 203 ~Cp~Cgg~lr 212 (275)
.||.||+.+.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 4999998875
No 246
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=30.27 E-value=85 Score=31.18 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|++|++.+|++|.|+.
T Consensus 186 ~~~~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 186 PDPAEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchH
Confidence 3567899999999999999999999984
No 247
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=30.20 E-value=1.2e+02 Score=28.40 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=25.6
Q ss_pred CCCCCCCCCeec--ccEeEeCCCCCHhHHHHHHHHhhhCC-EEEEEccCccch
Q psy16867 201 VPQCPHCHGDLK--PDIVFFGDNIPRHRMEKIDHLVRSCD-GVLVLGSSLTVP 250 (275)
Q Consensus 201 ~P~Cp~Cgg~lr--P~vv~f~E~~~~~~~~~~~~~~~~~d-liLvlGts~~v~ 250 (275)
-|.||.||...+ -.|.|.+-.--+-.+..-..-..-.| .+|++...---|
T Consensus 72 ~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcP 124 (415)
T COG5257 72 EPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP 124 (415)
T ss_pred CCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCC
Confidence 689999997542 34555543322222332211111123 667777666655
No 248
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=30.11 E-value=67 Score=31.82 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....++++.++|.+|++.+|++|.|+..
T Consensus 198 ~~~~~i~~~~~~L~~AkrPvil~G~g~~~ 226 (578)
T PRK06112 198 PAPQRLAEAASLLAQAQRPVVVAGGGVHI 226 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCccc
Confidence 45678999999999999999999999853
No 249
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.93 E-value=15 Score=28.93 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=15.9
Q ss_pred cEEEecCcchhHhhhcCCceEEecccccceeeCCCCcc
Q psy16867 122 SYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYE 159 (275)
Q Consensus 122 ~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~ 159 (275)
-+++||-.|.-++.- ...|++|+..
T Consensus 13 gh~attaadq~pel~-------------eafcskcgea 37 (160)
T COG4306 13 GHVATTAADQSPELM-------------EAFCSKCGEA 37 (160)
T ss_pred CceeeccccCCHHHH-------------HHHHhhhchH
Confidence 367777777655432 3458888874
No 250
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=29.92 E-value=25 Score=25.92 Aligned_cols=8 Identities=50% Similarity=1.402 Sum_probs=7.3
Q ss_pred CCCCCCCC
Q psy16867 201 VPQCPHCH 208 (275)
Q Consensus 201 ~P~Cp~Cg 208 (275)
-|+||.||
T Consensus 84 np~C~~C~ 91 (91)
T cd04482 84 NPVCPKCG 91 (91)
T ss_pred CCcCCCCC
Confidence 79999997
No 251
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=29.74 E-value=69 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+..+.+++++++|.+|++.+|++|.|..
T Consensus 189 ~~~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 189 PGAADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4467899999999999999999999985
No 252
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=29.58 E-value=24 Score=33.71 Aligned_cols=15 Identities=40% Similarity=0.979 Sum_probs=12.4
Q ss_pred CCCCCCCCCCeeccc
Q psy16867 200 HVPQCPHCHGDLKPD 214 (275)
Q Consensus 200 ~~P~Cp~Cgg~lrP~ 214 (275)
.-|+||.||+.|+-.
T Consensus 349 ~~p~Cp~Cg~~m~S~ 363 (421)
T COG1571 349 VNPVCPRCGGRMKSA 363 (421)
T ss_pred cCCCCCccCCchhhc
Confidence 369999999998754
No 253
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=29.55 E-value=69 Score=31.47 Aligned_cols=29 Identities=10% Similarity=0.398 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|.+|++.+|++|.|+..
T Consensus 181 ~~~~~l~~~~~~L~~AkrPvIl~G~g~~~ 209 (548)
T PRK08978 181 FPAAELEQARALLAQAKKPVLYVGGGVGM 209 (548)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 45678999999999999999999999863
No 254
>PLN02470 acetolactate synthase
Probab=29.50 E-value=65 Score=31.98 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+..+.+++++++|.+|++.+|++|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 200 PEKSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCChh
Confidence 4567899999999999999999999985
No 255
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=29.45 E-value=69 Score=31.27 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=28.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 17 IPKHKPVEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 17 ~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
...-+++....|+.+.++|+.+++-+|.+|.|+-
T Consensus 208 ~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~ 241 (617)
T COG3962 208 RIRRPPPDERELADAAALIKSAKKPLIVAGGGVL 241 (617)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCCEEEecCcee
Confidence 3444567789999999999999999999999975
No 256
>KOG2324|consensus
Probab=29.43 E-value=39 Score=31.71 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=14.0
Q ss_pred eEEecccccceeeCCCCccc
Q psy16867 141 VIEMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 141 v~elHG~~~~~~C~~C~~~~ 160 (275)
+++--|.=..++|.+|+..-
T Consensus 218 l~~~vgED~l~~C~~C~~s~ 237 (457)
T KOG2324|consen 218 LIHPVGEDTLMSCPSCGYSK 237 (457)
T ss_pred ccCccCccceeecCcCCccC
Confidence 44444666778999999753
No 257
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=29.22 E-value=54 Score=30.67 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=14.5
Q ss_pred CCCCCCCCCCeecccEeEeCCC
Q psy16867 200 HVPQCPHCHGDLKPDIVFFGDN 221 (275)
Q Consensus 200 ~~P~Cp~Cgg~lrP~vv~f~E~ 221 (275)
.+-.|++|| .+++.-.|..+.
T Consensus 42 ~v~~C~~Cg-a~~~~~~W~~~~ 62 (355)
T COG1499 42 NVEVCRHCG-AYRIRGRWVDEE 62 (355)
T ss_pred EEEECCcCC-CccCCCcceecc
Confidence 466899999 556555666633
No 258
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=29.16 E-value=16 Score=35.39 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=31.1
Q ss_pred ccEeEeCCCCCHh---HHHHHHHHhhhCCEEEEEccCccchHHhhhc
Q psy16867 213 PDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVPILVKEH 256 (275)
Q Consensus 213 P~vv~f~E~~~~~---~~~~~~~~~~~~dliLvlGts~~v~~~~r~~ 256 (275)
-||++-+-.+|-+ ++++....+.+.|+.||+|....|.+.+++.
T Consensus 356 MNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d 402 (463)
T PF02233_consen 356 MNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAARED 402 (463)
T ss_dssp HHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCS
T ss_pred ceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccC
Confidence 4666666666654 5788888999999999999999998777763
No 259
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.00 E-value=72 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
....+++++++|.+|++.+|++|.|+.
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 192 HKGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 467899999999999999999999986
No 260
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=28.68 E-value=34 Score=23.10 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=14.4
Q ss_pred CCCCCCCCCeecccEeE
Q psy16867 201 VPQCPHCHGDLKPDIVF 217 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~ 217 (275)
+-.||.||...+|+.+-
T Consensus 27 l~~C~~CG~~~~~H~vC 43 (57)
T PRK12286 27 LVECPNCGEPKLPHRVC 43 (57)
T ss_pred ceECCCCCCccCCeEEC
Confidence 66799999999998764
No 261
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=28.67 E-value=34 Score=32.34 Aligned_cols=12 Identities=42% Similarity=1.104 Sum_probs=10.2
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
-++||+||.++.
T Consensus 235 ~~~CpRC~~~Ly 246 (418)
T COG2995 235 EPRCPRCGSKLY 246 (418)
T ss_pred CCCCCCCCChhh
Confidence 689999998875
No 262
>PRK08322 acetolactate synthase; Reviewed
Probab=28.66 E-value=74 Score=31.16 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+..+.+++++++|.+|++.+|++|.|+.
T Consensus 181 ~~~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 181 ASPKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 3467899999999999999999999985
No 263
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=28.65 E-value=93 Score=30.63 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
....++++.++|.+|++.+|++|.|...
T Consensus 187 ~~~~i~~~~~~L~~AkrPvi~~G~g~~~ 214 (558)
T TIGR00118 187 HPLQIKKAAELINLAKKPVILVGGGVII 214 (558)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCccc
Confidence 4567999999999999999999999853
No 264
>PRK05580 primosome assembly protein PriA; Validated
Probab=28.53 E-value=30 Score=35.23 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=15.3
Q ss_pred CceEEecccccceeeCCCCccc
Q psy16867 139 KKVIEMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 139 ~~v~elHG~~~~~~C~~C~~~~ 160 (275)
...+.+.-.-...+|..|+...
T Consensus 379 ~~~~~C~~Cg~~~~C~~C~~~l 400 (679)
T PRK05580 379 APFLLCRDCGWVAECPHCDASL 400 (679)
T ss_pred CCceEhhhCcCccCCCCCCCce
Confidence 3466777777777888888654
No 265
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=28.49 E-value=39 Score=32.28 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.5
Q ss_pred CCCCCCCCCeecccEe
Q psy16867 201 VPQCPHCHGDLKPDIV 216 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv 216 (275)
...|+.||+.+....-
T Consensus 21 ~~~c~~cGl~lp~~~~ 36 (411)
T COG0498 21 QGLCPDCGLFLPAEYP 36 (411)
T ss_pred hCcCCcCCcccccccC
Confidence 5789999998876553
No 266
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=28.34 E-value=73 Score=28.28 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
-.+.++.|+++++.++..+|+.|+|++.+
T Consensus 154 a~~g~~~L~~lv~~a~~~~Im~GgGV~~~ 182 (248)
T PRK11572 154 AEQGLSLIMELIAASDGPIIMAGAGVRLS 182 (248)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCHH
Confidence 45789999999998888779999999853
No 267
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=28.29 E-value=27 Score=21.54 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=10.8
Q ss_pred CCCCCCCCCeecccEeEeC
Q psy16867 201 VPQCPHCHGDLKPDIVFFG 219 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~ 219 (275)
+++|.+|++.|=|-+.+-.
T Consensus 2 p~rC~~C~aylNp~~~~~~ 20 (40)
T PF04810_consen 2 PVRCRRCRAYLNPFCQFDD 20 (40)
T ss_dssp S-B-TTT--BS-TTSEEET
T ss_pred ccccCCCCCEECCcceEcC
Confidence 6799999999988876543
No 268
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=28.12 E-value=30 Score=22.09 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q psy16867 200 HVPQCPHCHG 209 (275)
Q Consensus 200 ~~P~Cp~Cgg 209 (275)
.+.+||+||.
T Consensus 10 GirkCp~CGt 19 (44)
T PF14952_consen 10 GIRKCPKCGT 19 (44)
T ss_pred ccccCCcCcC
Confidence 4889999984
No 269
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.11 E-value=68 Score=31.69 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
.....+++++++|.+|++.+|++|.|+..+
T Consensus 188 ~~~~~i~~~~~~L~~A~rPviv~G~g~~~~ 217 (563)
T PRK08527 188 GNSRQIKKAAEAIKEAKKPLFYLGGGAILS 217 (563)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 356789999999999999999999999643
No 270
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=27.88 E-value=31 Score=21.72 Aligned_cols=11 Identities=55% Similarity=1.361 Sum_probs=9.5
Q ss_pred CCCCCCCCeec
Q psy16867 202 PQCPHCHGDLK 212 (275)
Q Consensus 202 P~Cp~Cgg~lr 212 (275)
..||.||+.|.
T Consensus 3 ~~C~~Cg~~l~ 13 (47)
T PF13005_consen 3 RACPDCGGELK 13 (47)
T ss_pred CcCCCCCceee
Confidence 47999999887
No 271
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=27.87 E-value=11 Score=26.41 Aligned_cols=21 Identities=33% Similarity=0.909 Sum_probs=12.2
Q ss_pred CCCCCCCCC--eecccEeEeCCC
Q psy16867 201 VPQCPHCHG--DLKPDIVFFGDN 221 (275)
Q Consensus 201 ~P~Cp~Cgg--~lrP~vv~f~E~ 221 (275)
+-+||.|.. .+-.+.-||+|.
T Consensus 29 iv~C~gC~~~HlIaDnLg~f~e~ 51 (66)
T PF05180_consen 29 IVQCPGCKNRHLIADNLGWFGEN 51 (66)
T ss_dssp EEE-TTS--EEES--SS-SGGGS
T ss_pred EEECCCCcceeeehhhhcccccC
Confidence 678999974 577888899983
No 272
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=27.70 E-value=45 Score=31.38 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=33.7
Q ss_pred ccEeEeCCCCCHh---HHHHHHHHhhhCCEEEEEccCccchHHhhhc
Q psy16867 213 PDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVPILVKEH 256 (275)
Q Consensus 213 P~vv~f~E~~~~~---~~~~~~~~~~~~dliLvlGts~~v~~~~r~~ 256 (275)
-||++-+-..|-+ +++...+.+.+.|++||+|....|.+-+|..
T Consensus 357 MNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D 403 (463)
T COG1282 357 MNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDD 403 (463)
T ss_pred hhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccC
Confidence 4667766666654 4677888889999999999999997666544
No 273
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.44 E-value=81 Score=25.33 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccch
Q psy16867 101 SSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 101 ~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~ 162 (275)
....+...|+.|..|.+.|.+..+-..|--..++.. -++.=+++.|..|++....
T Consensus 51 p~islaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~-------~~~~H~HliC~~CG~v~e~ 105 (145)
T COG0735 51 PGISLATVYRTLKLLEEAGLVHRLEFEGGKTRYELN-------SEPHHHHLICLDCGKVIEF 105 (145)
T ss_pred CCCCHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecC-------CCCcccEEEecCCCCEEEe
Confidence 466788899999999998877655444422222221 1114668899999997654
No 274
>PRK12474 hypothetical protein; Provisional
Probab=27.42 E-value=78 Score=30.87 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|.+|++-||+.|.|+..
T Consensus 186 ~~~~~i~~~~~~L~~A~rPvil~G~g~~~ 214 (518)
T PRK12474 186 VAAETVERIAALLRNGKKSALLLRGSALR 214 (518)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCccch
Confidence 45678999999999999999999999863
No 275
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=27.37 E-value=29 Score=19.21 Aligned_cols=8 Identities=38% Similarity=1.024 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q psy16867 201 VPQCPHCH 208 (275)
Q Consensus 201 ~P~Cp~Cg 208 (275)
.-.||+||
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 45799998
No 276
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=27.20 E-value=77 Score=31.27 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....++++.++|.+|++.+|++|.|+..
T Consensus 196 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 224 (564)
T PRK08155 196 FDEESIRDAAAMINAAKRPVLYLGGGVIN 224 (564)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 34567999999999999999999999963
No 277
>PLN02573 pyruvate decarboxylase
Probab=27.11 E-value=49 Score=32.87 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
....+++++++|.+|++-+|++|.|+..
T Consensus 210 ~~~~~~~a~~~L~~AkrPvil~G~g~~~ 237 (578)
T PLN02573 210 LEAAVEAAAEFLNKAVKPVLVGGPKLRV 237 (578)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 4577999999999999999999999964
No 278
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.90 E-value=72 Score=26.15 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
.....++++++.|.+|++ |++.|-|-|..
T Consensus 18 l~~~~l~~~~~~i~~a~~-I~i~G~G~S~~ 46 (179)
T cd05005 18 IDEEELDKLISAILNAKR-IFVYGAGRSGL 46 (179)
T ss_pred cCHHHHHHHHHHHHhCCe-EEEEecChhHH
Confidence 456789999999999976 56778887753
No 279
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=26.74 E-value=31 Score=22.14 Aligned_cols=12 Identities=42% Similarity=0.960 Sum_probs=8.7
Q ss_pred CCCCCCCeeccc
Q psy16867 203 QCPHCHGDLKPD 214 (275)
Q Consensus 203 ~Cp~Cgg~lrP~ 214 (275)
-||.||..|.+.
T Consensus 2 FCp~Cg~~l~~~ 13 (52)
T smart00661 2 FCPKCGNMLIPK 13 (52)
T ss_pred CCCCCCCccccc
Confidence 499999876543
No 280
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=26.73 E-value=36 Score=30.63 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=13.1
Q ss_pred ceEEeccc----ccceeeCCCCcccc
Q psy16867 140 KVIEMHGT----AFRVMCLGCDYEID 161 (275)
Q Consensus 140 ~v~elHG~----~~~~~C~~C~~~~~ 161 (275)
.+-.++|. ..+++|+-|++++.
T Consensus 183 ~~s~l~~~~~~G~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 183 VLSVLRGGEREGKRYLHCSLCGTEWR 208 (290)
T ss_dssp EEEEEE------EEEEEETTT--EEE
T ss_pred ceEEEecCCCCccEEEEcCCCCCeee
Confidence 45556654 48999999999763
No 281
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=26.70 E-value=82 Score=31.57 Aligned_cols=8 Identities=38% Similarity=1.165 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q psy16867 202 PQCPHCHG 209 (275)
Q Consensus 202 P~Cp~Cgg 209 (275)
..||+||.
T Consensus 547 ~~CP~CGs 554 (586)
T TIGR02827 547 HRCPVCGS 554 (586)
T ss_pred CcCcCCCC
Confidence 57999984
No 282
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=26.54 E-value=23 Score=24.68 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.6
Q ss_pred EecccccceeeCCCCccc
Q psy16867 143 EMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 143 elHG~~~~~~C~~C~~~~ 160 (275)
+.+|.+-+.+|..|+.+.
T Consensus 12 ~p~s~Fl~VkCpdC~N~q 29 (67)
T COG2051 12 EPRSRFLRVKCPDCGNEQ 29 (67)
T ss_pred CCCceEEEEECCCCCCEE
Confidence 778889999999999864
No 283
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=26.43 E-value=1e+02 Score=28.61 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=20.3
Q ss_pred CCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHh-hhCCEEEEE
Q psy16867 201 VPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLV-RSCDGVLVL 243 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~-~~~dliLvl 243 (275)
...|.+|.....-+.+-- ..++++.+......+ ..++++|.|
T Consensus 28 ~~~C~RC~~l~hy~~~~~-~~~~~e~f~~~l~~~~~~~~~Il~V 70 (360)
T TIGR03597 28 EVYCQRCFRLKHYNEIQD-VELNDDDFLNLLNSLGDSNALIVYV 70 (360)
T ss_pred CeeecchhhhhccCcccc-CCCCHHHHHHHHhhcccCCcEEEEE
Confidence 568999975543222111 124444454444433 355544443
No 284
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=26.37 E-value=83 Score=30.96 Aligned_cols=29 Identities=10% Similarity=0.343 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....++++.++|.+|++-+|++|.|+..
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 219 (554)
T TIGR03254 191 PSPDSVDRAVELLKDAKRPLILLGKGAAY 219 (554)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 34678999999999999999999999863
No 285
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.26 E-value=42 Score=22.89 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=13.4
Q ss_pred CCCCCCCCCeecccEeE
Q psy16867 201 VPQCPHCHGDLKPDIVF 217 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~ 217 (275)
.-.|+.||.++-|+-.+
T Consensus 3 HkHC~~CG~~Ip~~~~f 19 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDESF 19 (59)
T ss_pred CCcCCcCCCcCCcchhh
Confidence 56899999999886444
No 286
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=26.17 E-value=71 Score=26.14 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.....++++.+.|.++++ |++.|.|.|.
T Consensus 15 l~~~~~~~~~~~l~~a~~-I~i~G~G~S~ 42 (179)
T TIGR03127 15 IDEEELDKLADKIIKAKR-IFVAGAGRSG 42 (179)
T ss_pred CCHHHHHHHHHHHHhCCE-EEEEecCHHH
Confidence 456789999999999885 6777888774
No 287
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=26.14 E-value=33 Score=32.66 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=10.3
Q ss_pred CCCCCCCCCCeec
Q psy16867 200 HVPQCPHCHGDLK 212 (275)
Q Consensus 200 ~~P~Cp~Cgg~lr 212 (275)
+...||+||..|.
T Consensus 32 ~~a~CpRCg~~L~ 44 (403)
T TIGR00155 32 QKAACPRCGTTLT 44 (403)
T ss_pred CeeECCCCCCCCc
Confidence 3568999998873
No 288
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=25.82 E-value=42 Score=20.22 Aligned_cols=13 Identities=31% Similarity=1.109 Sum_probs=6.8
Q ss_pred hccCCCCCCCCCC
Q psy16867 196 ISKFHVPQCPHCH 208 (275)
Q Consensus 196 ~~~~~~P~Cp~Cg 208 (275)
.+.+..+.|.+|.
T Consensus 19 ~~~F~~~VCD~CR 31 (34)
T PF01286_consen 19 LNNFDLPVCDKCR 31 (34)
T ss_dssp CCCTS-S--TTT-
T ss_pred HHhCCcccccccc
Confidence 4566789999995
No 289
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=25.75 E-value=31 Score=26.48 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=10.7
Q ss_pred CCCCCCCCCeeccc
Q psy16867 201 VPQCPHCHGDLKPD 214 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~ 214 (275)
+-.||.|+....+.
T Consensus 19 ~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 19 QLICPSCLYEWNEN 32 (109)
T ss_pred eeECcccccccccc
Confidence 66899998776655
No 290
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=25.53 E-value=20 Score=24.20 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=10.4
Q ss_pred CCCCCCCCCCeec
Q psy16867 200 HVPQCPHCHGDLK 212 (275)
Q Consensus 200 ~~P~Cp~Cgg~lr 212 (275)
..-+||.||...|
T Consensus 16 ~~lrCPRC~~~FR 28 (65)
T COG4049 16 EFLRCPRCGMVFR 28 (65)
T ss_pred eeeeCCchhHHHH
Confidence 3789999997765
No 291
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.37 E-value=80 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcc
Q psy16867 25 ESDINKLKQFIEKYNKILVVTGAG 48 (275)
Q Consensus 25 ~~~l~~l~~~l~~a~~ivv~tGAG 48 (275)
...++.+++.|.+|++++|.||.-
T Consensus 23 eeEve~ireyi~sA~r~vV~t~N~ 46 (156)
T COG4019 23 EEEVEKIREYIVSAKRIVVATNNQ 46 (156)
T ss_pred HHHHHHHHHHHhccceEEEecCCH
Confidence 467999999999999999987753
No 292
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=25.32 E-value=87 Score=25.50 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=15.1
Q ss_pred CCCCCCCCCC------eecccEeEeCC
Q psy16867 200 HVPQCPHCHG------DLKPDIVFFGD 220 (275)
Q Consensus 200 ~~P~Cp~Cgg------~lrP~vv~f~E 220 (275)
.+-.||.||+ +|-|+|.-=+.
T Consensus 31 glv~CP~Cgs~~V~K~lmAP~v~~~~~ 57 (148)
T PF06676_consen 31 GLVSCPVCGSTEVSKALMAPAVATSRS 57 (148)
T ss_pred CCccCCCCCCCeEeeecCCCeecCCCC
Confidence 4789999984 56788765443
No 293
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=34 Score=28.38 Aligned_cols=13 Identities=38% Similarity=1.232 Sum_probs=10.9
Q ss_pred CCCCCCCCCeecc
Q psy16867 201 VPQCPHCHGDLKP 213 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP 213 (275)
.-+||.|++.|++
T Consensus 97 ~~RCp~CN~~L~~ 109 (165)
T COG1656 97 FSRCPECNGELEK 109 (165)
T ss_pred cccCcccCCEecc
Confidence 5689999999864
No 294
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.26 E-value=77 Score=25.30 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEec--ccccceeeCCCCcccch
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 162 (275)
...+.-.|+.|..|.+.|.+..+-..|-- ..|++. +.-.++.|..|++....
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~~---------~~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGGK---------SVFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCc---------EEEEeCCCCCCCceEECCCCCEEEe
Confidence 55678889999999998887666554421 123321 12246999999997654
No 295
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=25.17 E-value=59 Score=31.95 Aligned_cols=28 Identities=0% Similarity=0.009 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
....++++.++|++|++-+|++|.|+..
T Consensus 187 ~~~~v~~~~~~l~~AkrPvi~~G~g~~~ 214 (535)
T TIGR03394 187 LDACADEVLARMRSATSPVMMVCVEVRR 214 (535)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 3467889999999999999999999864
No 296
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=25.12 E-value=35 Score=28.06 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=10.2
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
+|+|+.||+...
T Consensus 97 ip~C~~Cg~~R~ 108 (164)
T PF04194_consen 97 IPKCENCGSPRV 108 (164)
T ss_pred CCCCccCCCccE
Confidence 899999998743
No 297
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=25.02 E-value=67 Score=28.35 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccccCC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTESG 54 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sG 54 (275)
.....+++++++|.+|++ |++.|.|.|...+
T Consensus 113 id~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a 143 (284)
T PRK11302 113 LDPSAINRAVDLLTQAKK-ISFFGLGASAAVA 143 (284)
T ss_pred cCHHHHHHHHHHHHcCCe-EEEEEcchHHHHH
Confidence 345678899999999986 6788889886544
No 298
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=24.72 E-value=69 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCccc
Q psy16867 25 ESDINKLKQFIEKYNKILVVTGAGI 49 (275)
Q Consensus 25 ~~~l~~l~~~l~~a~~ivv~tGAGi 49 (275)
...++.+++.|.+|++|||.|..+-
T Consensus 22 ~EEv~~Ir~~I~nakkIvV~t~N~k 46 (154)
T PF11576_consen 22 EEEVEAIREYILNAKKIVVATNNEK 46 (154)
T ss_dssp HHHHHHHHHHHHH-S-EEE----HH
T ss_pred HHHHHHHHHHHhcCceEEEecCCch
Confidence 3678899999999999999887763
No 299
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.71 E-value=33 Score=25.43 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=11.2
Q ss_pred cEEEEeCcccccc
Q psy16867 40 KILVVTGAGISTE 52 (275)
Q Consensus 40 ~ivv~tGAGiS~~ 52 (275)
+|++.+|+|++++
T Consensus 4 kILvvCgsG~~TS 16 (94)
T PRK10310 4 KIIVACGGAVATS 16 (94)
T ss_pred eEEEECCCchhHH
Confidence 6899999999875
No 300
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=24.69 E-value=1.2e+02 Score=30.10 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|++|++.+|++|.|.+
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvii~G~g~~ 213 (574)
T PRK09124 186 PAEEELRKLAALLNGSSNITLLCGSGCA 213 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECcChH
Confidence 3457899999999999999999999985
No 301
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=24.67 E-value=93 Score=30.77 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|.+|++.+|++|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 200 PNLLQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 3456799999999999999999999975
No 302
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=24.63 E-value=87 Score=31.12 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
.....+++++++|.+|++.+|++|.|+.
T Consensus 185 ~~~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 185 GGEQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3567899999999999999999999986
No 303
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=24.59 E-value=92 Score=30.46 Aligned_cols=43 Identities=23% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHHhhhCCEEEEEccCccchHH----hhhccCcEEEEecCCCCC
Q psy16867 228 EKIDHLVRSCDGVLVLGSSLTVPIL----VKEHAKGYLGKGNVQTTP 270 (275)
Q Consensus 228 ~~~~~~~~~~dliLvlGts~~v~~~----~r~~~~~~~v~iN~~~~~ 270 (275)
..+.+.++++|+||.+|+++.-... ...+.+..+|.|+.++..
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 310 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGE 310 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHH
Confidence 3455678899999999986322111 111224678888877754
No 304
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=24.57 E-value=39 Score=37.46 Aligned_cols=12 Identities=50% Similarity=1.149 Sum_probs=9.8
Q ss_pred CCCCCCCeeccc
Q psy16867 203 QCPHCHGDLKPD 214 (275)
Q Consensus 203 ~Cp~Cgg~lrP~ 214 (275)
.||+||..|.-+
T Consensus 935 ~Cp~Cg~~~~kd 946 (1437)
T PRK00448 935 DCPKCGTKLKKD 946 (1437)
T ss_pred cCcccccccccc
Confidence 699999988644
No 305
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=24.45 E-value=1e+02 Score=25.72 Aligned_cols=31 Identities=32% Similarity=0.593 Sum_probs=24.0
Q ss_pred eEeCCCCCHh--HHHHHHHHhhhCC-EEEEEccC
Q psy16867 216 VFFGDNIPRH--RMEKIDHLVRSCD-GVLVLGSS 246 (275)
Q Consensus 216 v~f~E~~~~~--~~~~~~~~~~~~d-liLvlGts 246 (275)
++||-+.|.+ .+......+++.| |+|+||+-
T Consensus 7 v~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa 40 (172)
T COG1056 7 VYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSA 40 (172)
T ss_pred EEEeccCCccHhHHHHHHHHHHhCCEEEEEEccC
Confidence 6788887765 5666777888888 88889983
No 306
>PRK08266 hypothetical protein; Provisional
Probab=24.37 E-value=94 Score=30.45 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....++++.++|.+|++.+|++|.|.+
T Consensus 190 ~~~~~i~~~~~~L~~AkrPvIv~G~g~~ 217 (542)
T PRK08266 190 PDPDAIAAAAALIAAAKNPMIFVGGGAA 217 (542)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCChh
Confidence 4456899999999999999999999964
No 307
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=24.36 E-value=84 Score=31.75 Aligned_cols=9 Identities=33% Similarity=0.925 Sum_probs=6.9
Q ss_pred CCCCCCCCC
Q psy16867 201 VPQCPHCHG 209 (275)
Q Consensus 201 ~P~Cp~Cgg 209 (275)
.-.||+||.
T Consensus 580 ~~~CP~CGs 588 (623)
T PRK08271 580 GKRCPICGS 588 (623)
T ss_pred CcCCcCCCC
Confidence 467999984
No 308
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=24.32 E-value=34 Score=32.73 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=9.9
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
.-+||+||..|.
T Consensus 30 ~a~CpRCg~~L~ 41 (419)
T PRK15103 30 KAACPRCGTTLT 41 (419)
T ss_pred eeECCCCCCCCc
Confidence 567999999883
No 309
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=24.29 E-value=1e+02 Score=24.90 Aligned_cols=39 Identities=26% Similarity=0.561 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHh--CCcEEEEeCc------cccc---cCCCCCcccCCCc
Q psy16867 26 SDINKLKQFIEK--YNKILVVTGA------GIST---ESGIPDYRSEGVG 64 (275)
Q Consensus 26 ~~l~~l~~~l~~--a~~ivv~tGA------GiS~---~sGiP~fr~~~~g 64 (275)
.+-++++++..+ +.++||+.|| |+.+ ..|=|||.++-.|
T Consensus 53 EnQ~Rvk~~aEk~g~eNvvVllGaaeaEaaglaAETVt~GDPTfAGPLAG 102 (154)
T PRK13265 53 ENQKRVKDLAEKFGAENVVVILGAAEAEAAGLAAETVTNGDPTFAGPLAG 102 (154)
T ss_pred HHHHHHHHHHHhcCCccEEEEecccchhhccceeeeeccCCCcccccccC
Confidence 444555555554 5688888886 4432 3466999887433
No 310
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=24.25 E-value=96 Score=30.50 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 26 SDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 26 ~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
..++.++++|++|++.+|++|.|+.
T Consensus 183 ~~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 183 IDFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchh
Confidence 5789999999999999999999974
No 311
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=24.18 E-value=66 Score=27.03 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=13.0
Q ss_pred hccCCCCCCCCCCCeecc
Q psy16867 196 ISKFHVPQCPHCHGDLKP 213 (275)
Q Consensus 196 ~~~~~~P~Cp~Cgg~lrP 213 (275)
+.+.....|++||..+-+
T Consensus 152 ~~~~e~rtC~~CG~v~~~ 169 (177)
T PRK13264 152 YASEELRTCDNCGTVHPG 169 (177)
T ss_pred hcCHhhccCCcCCcccCc
Confidence 344568899999987643
No 312
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=24.17 E-value=62 Score=20.22 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=12.7
Q ss_pred HHHHHHHhCCcEEEEeCcccccc
Q psy16867 30 KLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 30 ~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
..+..|..|.--.|.+|+|++..
T Consensus 2 e~a~Rl~~AgF~~i~~g~g~~~~ 24 (41)
T PF11590_consen 2 ETAERLRSAGFATIGSGAGLPSS 24 (41)
T ss_dssp HHHHHHHHTT-EEECTTS-----
T ss_pred hHHHHHHHHhHHHhccCccccch
Confidence 35666777888888888887754
No 313
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=24.14 E-value=89 Score=31.06 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|.+|++.+|++|.|..
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 188 GHPLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 3467899999999999999999999985
No 314
>PRK11827 hypothetical protein; Provisional
Probab=24.11 E-value=31 Score=23.64 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=11.7
Q ss_pred CCCCCCCCCeeccc
Q psy16867 201 VPQCPHCHGDLKPD 214 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~ 214 (275)
+-.||.|+|.|+.+
T Consensus 8 ILaCP~ckg~L~~~ 21 (60)
T PRK11827 8 IIACPVCNGKLWYN 21 (60)
T ss_pred heECCCCCCcCeEc
Confidence 67899999998753
No 315
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.11 E-value=40 Score=28.13 Aligned_cols=15 Identities=40% Similarity=0.990 Sum_probs=12.9
Q ss_pred CCCCCCCCCCeeccc
Q psy16867 200 HVPQCPHCHGDLKPD 214 (275)
Q Consensus 200 ~~P~Cp~Cgg~lrP~ 214 (275)
.-|.||-||.+|-|.
T Consensus 153 GRP~CPlCg~PlDP~ 167 (171)
T PF11290_consen 153 GRPPCPLCGEPLDPE 167 (171)
T ss_pred CCCCCCCCCCCCCCC
Confidence 579999999998774
No 316
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=24.07 E-value=45 Score=22.29 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.0
Q ss_pred CCCCCCCCCeecccEeE
Q psy16867 201 VPQCPHCHGDLKPDIVF 217 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~ 217 (275)
+-.|+.||...+|+-+-
T Consensus 26 l~~C~~cG~~~~~H~vc 42 (55)
T TIGR01031 26 LVVCPNCGEFKLPHRVC 42 (55)
T ss_pred ceECCCCCCcccCeeEC
Confidence 66799999999888764
No 317
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.07 E-value=78 Score=27.93 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCccccccC
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGISTES 53 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~~s 53 (275)
....++++.++|.+|++ |++.|.|.|...
T Consensus 114 ~~~~l~~~~~~i~~a~~-I~i~G~G~s~~~ 142 (278)
T PRK11557 114 SEEKLHECVTMLRSARR-IILTGIGASGLV 142 (278)
T ss_pred CHHHHHHHHHHHhcCCe-EEEEecChhHHH
Confidence 34678889999999987 666778877543
No 318
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.04 E-value=37 Score=23.06 Aligned_cols=10 Identities=60% Similarity=1.394 Sum_probs=8.7
Q ss_pred CCCCCCCeec
Q psy16867 203 QCPHCHGDLK 212 (275)
Q Consensus 203 ~Cp~Cgg~lr 212 (275)
+||.||+...
T Consensus 19 ~Cp~CG~~t~ 28 (59)
T COG2260 19 KCPVCGGDTK 28 (59)
T ss_pred cCCCCCCccc
Confidence 7999999876
No 319
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=24.01 E-value=47 Score=21.05 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=8.6
Q ss_pred CCCCCCCCCe
Q psy16867 201 VPQCPHCHGD 210 (275)
Q Consensus 201 ~P~Cp~Cgg~ 210 (275)
.+.||+||..
T Consensus 18 g~~CP~Cg~~ 27 (46)
T PF12760_consen 18 GFVCPHCGST 27 (46)
T ss_pred CCCCCCCCCe
Confidence 5889999986
No 320
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=23.53 E-value=83 Score=31.05 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
+....+++++++|.+|++.+|++|.|...
T Consensus 192 ~~~~~i~~~a~~L~~AkrPvil~G~g~~~ 220 (561)
T PRK06048 192 GNPQQIKRAAELIMKAERPIIYAGGGVIS 220 (561)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 34568999999999999999999999864
No 321
>PRK15482 transcriptional regulator MurR; Provisional
Probab=23.37 E-value=79 Score=28.11 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
....+++++++|.+|++ |++.|.|.|..
T Consensus 121 d~~~l~~~~~~i~~A~~-I~i~G~G~S~~ 148 (285)
T PRK15482 121 DYARLQKIIEVISKAPF-IQITGLGGSAL 148 (285)
T ss_pred CHHHHHHHHHHHHhCCe-eEEEEeChhHH
Confidence 34578889999999997 56788887744
No 322
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=22.82 E-value=28 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=21.5
Q ss_pred EEEecCcchhHhhhcCCc--eEE-----ecccccceeeCCCCcccc
Q psy16867 123 YIITQNVDGLHYKAGNKK--VIE-----MHGTAFRVMCLGCDYEID 161 (275)
Q Consensus 123 ~viTqNiD~L~~~aG~~~--v~e-----lHG~~~~~~C~~C~~~~~ 161 (275)
+++--|+-.-..+++... |+| --++-.++.|.+|+....
T Consensus 80 flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~~~wyc~~c~~~~~ 125 (159)
T TIGR03037 80 FLLPPHVPHSPQRPAGSIGLVIERKRPQGELDGFQWFCPQCGHKLH 125 (159)
T ss_pred EEeCCCCCcccccCCCcEEEEEEeCCCCCCCcceEEECCCCCCeEE
Confidence 566666665555543211 111 124444678999988654
No 323
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=22.53 E-value=73 Score=21.78 Aligned_cols=8 Identities=38% Similarity=1.099 Sum_probs=6.1
Q ss_pred CCCCCCCC
Q psy16867 201 VPQCPHCH 208 (275)
Q Consensus 201 ~P~Cp~Cg 208 (275)
.-+||+||
T Consensus 50 ~Y~Cp~CG 57 (61)
T COG2888 50 PYRCPKCG 57 (61)
T ss_pred ceECCCcC
Confidence 45788887
No 324
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.46 E-value=97 Score=30.68 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
....+++++++|.+|++.+|++|.|+..
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~~ 219 (574)
T PRK06466 192 HSGQIRKAVEMLLAAKRPVIYSGGGVVL 219 (574)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 4578999999999999999999999853
No 325
>KOG2593|consensus
Probab=22.40 E-value=41 Score=32.07 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=12.0
Q ss_pred ccceeeCCCCcccchhH
Q psy16867 148 AFRVMCLGCDYEIDRHK 164 (275)
Q Consensus 148 ~~~~~C~~C~~~~~~~~ 164 (275)
.....|..|.+.|..-+
T Consensus 126 ~~~Y~Cp~C~kkyt~Le 142 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLE 142 (436)
T ss_pred cccccCCccccchhhhH
Confidence 34567999999885443
No 326
>PF04161 Arv1: Arv1-like family ; InterPro: IPR007290 Arv1 is a transmembrane protein, with potential zinc-binding motifs, that mediates sterol homeostasis. Its action is important in lipid homeostasis, which prevents free sterol toxicity []. Arv1 contains a homology domain (AHD), which consists of an N-terminal cysteine-rich subdomain with a putative zinc-binding motif, followed by a C-terminal subdomain of 33 amino acids. The C-terminal subdomain of the AHD is critical for the protein's function []. In yeast, Arv1p is important for the delivery of an early glycosylphosphatidylinositol GPI intermediate, GlcN-acylPI, to the first mannosyltransferase of GPI synthesis in the ER lumen []. It is important for the traffic of sterol in yeast and in humans. In eukaryotic cells, it may fuction in the sphingolipid metabolic pathway as a transporter of ceramides between the ER and Golgi [].
Probab=22.24 E-value=52 Score=28.19 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=9.3
Q ss_pred CCCCCCCCCCee
Q psy16867 200 HVPQCPHCHGDL 211 (275)
Q Consensus 200 ~~P~Cp~Cgg~l 211 (275)
++-.|++||...
T Consensus 23 rLt~C~~C~~va 34 (208)
T PF04161_consen 23 RLTKCPNCGKVA 34 (208)
T ss_pred EEeeccccCCcc
Confidence 367899998755
No 327
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=22.14 E-value=76 Score=25.81 Aligned_cols=20 Identities=15% Similarity=0.521 Sum_probs=13.8
Q ss_pred eEEeccc-ccceeeCCCCccc
Q psy16867 141 VIEMHGT-AFRVMCLGCDYEI 160 (275)
Q Consensus 141 v~elHG~-~~~~~C~~C~~~~ 160 (275)
|..+..+ |.+.-|..|.+..
T Consensus 24 I~~I~~~~~~Y~aC~~C~kkv 44 (166)
T cd04476 24 IVFIKPDNWWYPACPGCNKKV 44 (166)
T ss_pred EEEEcCCCeEEccccccCccc
Confidence 4444444 8888899998864
No 328
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=22.08 E-value=86 Score=30.77 Aligned_cols=25 Identities=0% Similarity=-0.107 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 26 SDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 26 ~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
..++++.++|++|++.+|++|.|+.
T Consensus 193 ~~i~~a~~~L~~AkrPvil~G~g~~ 217 (539)
T TIGR03393 193 AFRDAAENKLAMAKRVSLLADFLAL 217 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEeChhhc
Confidence 3489999999999999999999985
No 329
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=22.07 E-value=50 Score=31.24 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=11.3
Q ss_pred cCCCCCCCCCCCeec
Q psy16867 198 KFHVPQCPHCHGDLK 212 (275)
Q Consensus 198 ~~~~P~Cp~Cgg~lr 212 (275)
+.....||+||..++
T Consensus 35 ~~q~A~CPRC~~~l~ 49 (418)
T COG2995 35 SGQSAYCPRCGHTLT 49 (418)
T ss_pred CCCcccCCCCCCccc
Confidence 344678999998775
No 330
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=22.02 E-value=30 Score=35.91 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=0.0
Q ss_pred cccceeeCCCCcccc
Q psy16867 147 TAFRVMCLGCDYEID 161 (275)
Q Consensus 147 ~~~~~~C~~C~~~~~ 161 (275)
.+...+|..|+....
T Consensus 652 ei~~r~Cp~Cg~~t~ 666 (900)
T PF03833_consen 652 EIGRRRCPKCGKETF 666 (900)
T ss_dssp ---------------
T ss_pred eeecccCcccCCcch
Confidence 355678999998754
No 331
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=21.98 E-value=62 Score=27.03 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHH----------c-CCccEEEecCcchhHhhh
Q psy16867 102 SFQPNANHYALKQMED----------N-EKLSYIITQNVDGLHYKA 136 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~----------~-~~~~~viTqNiD~L~~~a 136 (275)
.-.-|..-+.++.|.+ + -|-+++++.-+-+|.-+-
T Consensus 80 aGgtN~iSR~iAaliElNW~~d~eE~kGlKKFflLS~R~r~LiiKH 125 (200)
T PF12387_consen 80 AGGTNFISRLIAALIELNWAMDEEESKGLKKFFLLSGRVRNLIIKH 125 (200)
T ss_pred cCcchHHHHHHHHHHHhhccccchhhcCcceeeeehhHHHHHHHHh
Confidence 3455777778888764 1 245688888888887653
No 332
>PF14353 CpXC: CpXC protein
Probab=21.94 E-value=45 Score=25.97 Aligned_cols=18 Identities=22% Similarity=0.691 Sum_probs=15.8
Q ss_pred ecccccceeeCCCCcccc
Q psy16867 144 MHGTAFRVMCLGCDYEID 161 (275)
Q Consensus 144 lHG~~~~~~C~~C~~~~~ 161 (275)
+-|+++...|..|++...
T Consensus 32 l~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 32 LDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred HcCCcCEEECCCCCCcee
Confidence 489999999999999763
No 333
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=21.93 E-value=47 Score=27.75 Aligned_cols=15 Identities=40% Similarity=1.004 Sum_probs=12.7
Q ss_pred CCCCCCCCCCeeccc
Q psy16867 200 HVPQCPHCHGDLKPD 214 (275)
Q Consensus 200 ~~P~Cp~Cgg~lrP~ 214 (275)
.-|.||.||.++-|.
T Consensus 155 GRP~CPlCg~PldP~ 169 (177)
T TIGR03847 155 GRPPCPLCGRPIDPD 169 (177)
T ss_pred CCCCCCCCCCCCCCC
Confidence 479999999998764
No 334
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=21.62 E-value=74 Score=25.96 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCC---cEEEEeCcccccc
Q psy16867 28 INKLKQFIEKYN---KILVVTGAGISTE 52 (275)
Q Consensus 28 l~~l~~~l~~a~---~ivv~tGAGiS~~ 52 (275)
-+++.+++++.+ .-||+++||+|+.
T Consensus 41 p~~l~~~~~~~~~~~~~viIa~AG~~a~ 68 (150)
T PF00731_consen 41 PERLLEFVKEYEARGADVIIAVAGMSAA 68 (150)
T ss_dssp HHHHHHHHHHTTTTTESEEEEEEESS--
T ss_pred HHHHHHHHHHhccCCCEEEEEECCCccc
Confidence 345566665543 3599999999753
No 335
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=21.59 E-value=1.3e+02 Score=24.82 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCcEEEEeCccccccCCCCCc
Q psy16867 28 INKLKQFIEKYNKILVVTGAGISTESGIPDY 58 (275)
Q Consensus 28 l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~f 58 (275)
+.++.+-.++.+.-||+++||+++ +||..
T Consensus 42 ~~~~~~~a~~~g~~viIa~AG~aa--~Lpgv 70 (156)
T TIGR01162 42 MLEYAKEAEERGIKVIIAGAGGAA--HLPGM 70 (156)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccc--hhHHH
Confidence 444444444445789999999974 56543
No 336
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.50 E-value=1.2e+02 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
....++++.++|.+|++.||++|.|+..
T Consensus 192 ~~~~i~~~~~~l~~A~rPvi~~G~g~~~ 219 (574)
T PRK06882 192 HKGQIKKALKALLVAKKPVLFVGGGVIT 219 (574)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 4678999999999999999999999853
No 337
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=21.50 E-value=53 Score=26.89 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEecCcchhHhhhc-CCceEEecccccceeeCCCCccc
Q psy16867 124 IITQNVDGLHYKAG-NKKVIEMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 124 viTqNiD~L~~~aG-~~~v~elHG~~~~~~C~~C~~~~ 160 (275)
.+-+.|++|--..- .-.+-.+.|.-+..+|. |+..+
T Consensus 90 ~lm~qV~~l~~~~~h~~~~~~v~~~~~~Y~C~-C~q~~ 126 (156)
T COG3091 90 LLMQQVLGLRFCRTHQFEVQSVRRTTYPYRCQ-CQQHY 126 (156)
T ss_pred HHHHHhCCCCCCccchHHHhhccccceeEEee-cCCcc
Confidence 33444554433321 22344556677888999 99875
No 338
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=21.45 E-value=71 Score=24.50 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=9.6
Q ss_pred ccceeeCCCCccc
Q psy16867 148 AFRVMCLGCDYEI 160 (275)
Q Consensus 148 ~~~~~C~~C~~~~ 160 (275)
....+|+.|++..
T Consensus 40 ~~~~~C~~Cg~~~ 52 (111)
T PF14319_consen 40 FHRYRCEDCGHEK 52 (111)
T ss_pred cceeecCCCCceE
Confidence 3457899999865
No 339
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=21.35 E-value=48 Score=36.15 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCc
Q psy16867 26 SDINKLKQFIEKYNKILVVTGA 47 (275)
Q Consensus 26 ~~l~~l~~~l~~a~~ivv~tGA 47 (275)
...+.+.++-++.+..+|.||.
T Consensus 485 ~~~~~l~~la~~~~~p~VaT~d 506 (1213)
T TIGR01405 485 EIIKKLIELAKELNKPVVATGD 506 (1213)
T ss_pred HHHHHHHHHHHHhCCCEEEeCC
Confidence 3445555555666667777764
No 340
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=21.12 E-value=56 Score=21.29 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=8.7
Q ss_pred ccceeeCCCCccc
Q psy16867 148 AFRVMCLGCDYEI 160 (275)
Q Consensus 148 ~~~~~C~~C~~~~ 160 (275)
+....|..|....
T Consensus 12 ~~k~ICrkC~ARn 24 (48)
T PRK04136 12 FNKKICMRCNARN 24 (48)
T ss_pred hcccchhcccCCC
Confidence 3456788887754
No 341
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=21.08 E-value=56 Score=29.62 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.7
Q ss_pred cEEEEeCccccccCCCCCc
Q psy16867 40 KILVVTGAGISTESGIPDY 58 (275)
Q Consensus 40 ~ivv~tGAGiS~~sGiP~f 58 (275)
..+..+|+|+|++-|+||-
T Consensus 37 ~ai~~ss~~va~slG~pD~ 55 (290)
T TIGR02321 37 GGIWGSGFELSASYAVPDA 55 (290)
T ss_pred CEEEECHHHHHHHCCCCCc
Confidence 4778889999988999874
No 342
>KOG4126|consensus
Probab=20.94 E-value=1.4e+02 Score=29.31 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=18.8
Q ss_pred HHHHHHHHHH-------hCCcEEEEeCcccccc
Q psy16867 27 DINKLKQFIE-------KYNKILVVTGAGISTE 52 (275)
Q Consensus 27 ~l~~l~~~l~-------~a~~ivv~tGAGiS~~ 52 (275)
..+.|.+.|+ .||+||+|.|-||+.+
T Consensus 54 a~~~l~~~l~~~~~~t~kaKNVIlFlgDGMg~~ 86 (529)
T KOG4126|consen 54 AQEELAKALKLQQRNTRKAKNVILFLGDGMGVS 86 (529)
T ss_pred HHHHHHHHhhcCccccccCceEEEEeeCCCChh
Confidence 4445555543 5889999999999864
No 343
>PRK07586 hypothetical protein; Validated
Probab=20.93 E-value=99 Score=30.04 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=16.4
Q ss_pred HHHHHHhhhCCEEEEEccCc
Q psy16867 228 EKIDHLVRSCDGVLVLGSSL 247 (275)
Q Consensus 228 ~~~~~~~~~~dliLvlGts~ 247 (275)
..+.+.++++|+||.||+.+
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~ 273 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKA 273 (514)
T ss_pred HHHHHHHhcCCEEEEECCCC
Confidence 44556788999999999985
No 344
>PRK09401 reverse gyrase; Reviewed
Probab=20.12 E-value=89 Score=34.11 Aligned_cols=36 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred CCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccC
Q psy16867 202 PQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 246 (275)
Q Consensus 202 P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts 246 (275)
..||.|+....++ ..+.++...+.+.++|.|+ ++|.
T Consensus 693 ~~~~~c~~~~~~~--------k~~~~~~Lr~l~~~~d~Ii-iAtD 728 (1176)
T PRK09401 693 DKCPRCGSTNIED--------KEEIIEALRELALEVDEVL-IATD 728 (1176)
T ss_pred ccccccccccCCC--------HHHHHHHHHHHHhcCCEEE-EccC
Confidence 3678886543111 1346777777778888654 4444
No 345
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=20.04 E-value=39 Score=23.05 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=7.3
Q ss_pred ccccceeeCCCCcc
Q psy16867 146 GTAFRVMCLGCDYE 159 (275)
Q Consensus 146 G~~~~~~C~~C~~~ 159 (275)
+....+.|.+|++.
T Consensus 21 ~~~~~F~CPnCG~~ 34 (59)
T PRK14890 21 EKAVKFLCPNCGEV 34 (59)
T ss_pred CccCEeeCCCCCCe
Confidence 33445556666554
Done!