Query psy16867
Match_columns 275
No_of_seqs 142 out of 1215
Neff 7.8
Searched_HMMs 29240
Date Sat Aug 17 00:07:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yc5_A NAD-dependent deacetyla 100.0 8.1E-58 2.8E-62 402.2 20.8 214 28-273 3-222 (246)
2 1ma3_A SIR2-AF2, transcription 100.0 2E-57 7E-62 401.1 18.6 217 24-273 1-225 (253)
3 3riy_A NAD-dependent deacetyla 100.0 4.9E-57 1.7E-61 402.3 16.2 235 25-273 8-254 (273)
4 3u31_A SIR2A, transcriptional 100.0 1.6E-56 5.4E-61 400.9 18.6 224 21-273 28-258 (290)
5 1m2k_A Silent information regu 100.0 2.5E-56 8.4E-61 393.3 16.7 211 29-273 3-219 (249)
6 1q1a_A HST2 protein; ternary c 100.0 1.1E-53 3.9E-58 383.9 22.5 219 23-270 3-249 (289)
7 3glr_A NAD-dependent deacetyla 100.0 5.1E-54 1.7E-58 383.2 16.5 213 25-270 8-235 (285)
8 1j8f_A SIRT2, sirtuin 2, isofo 100.0 4E-53 1.4E-57 384.8 21.5 219 23-273 26-261 (323)
9 1q14_A HST2 protein; histone d 100.0 6.3E-53 2.1E-57 387.8 21.4 223 19-270 7-257 (361)
10 1s5p_A NAD-dependent deacetyla 100.0 2.3E-53 7.8E-58 371.4 12.2 202 38-273 1-209 (235)
11 2hjh_A NAD-dependent histone d 100.0 1.6E-51 5.3E-56 379.0 19.3 239 26-272 34-295 (354)
12 4iao_A NAD-dependent histone d 100.0 8.6E-51 3E-55 381.0 20.3 238 26-271 172-432 (492)
13 3k35_A NAD-dependent deacetyla 100.0 8.5E-50 2.9E-54 359.5 15.2 213 23-273 29-248 (318)
14 3pki_A NAD-dependent deacetyla 100.0 1.6E-49 5.4E-54 360.6 13.0 213 23-273 29-248 (355)
15 2lcq_A Putative toxin VAPC6; P 85.3 0.35 1.2E-05 38.7 1.9 11 150-160 132-142 (165)
16 2k5c_A Uncharacterized protein 81.6 1.3 4.4E-05 31.2 3.3 73 150-236 8-80 (95)
17 3na7_A HP0958; flagellar bioge 80.5 1.1 3.9E-05 38.4 3.4 43 139-212 191-233 (256)
18 3cf4_G Acetyl-COA decarboxylas 79.1 2.1 7.1E-05 34.2 4.4 29 23-51 19-47 (170)
19 1lko_A Rubrerythrin all-iron(I 77.9 0.74 2.5E-05 37.8 1.4 13 148-160 153-165 (191)
20 6rxn_A Rubredoxin; electron tr 75.2 2 7E-05 26.8 2.5 14 148-161 2-15 (46)
21 2kdx_A HYPA, hydrogenase/ureas 74.8 1 3.5E-05 34.0 1.3 18 143-160 66-83 (119)
22 4rxn_A Rubredoxin; electron tr 68.6 11 0.00037 24.3 5.0 13 149-161 2-14 (54)
23 1dx8_A Rubredoxin; electron tr 66.9 7 0.00024 26.6 4.0 16 146-161 3-18 (70)
24 1twf_L ABC10-alpha, DNA-direct 65.1 3.8 0.00013 28.0 2.3 11 150-160 28-38 (70)
25 2v3b_B Rubredoxin 2, rubredoxi 64.4 7.4 0.00025 25.2 3.5 13 149-161 2-14 (55)
26 1e8j_A Rubredoxin; iron-sulfur 64.2 7.5 0.00026 24.8 3.5 13 149-161 2-14 (52)
27 3hww_A 2-succinyl-5-enolpyruvy 62.2 10 0.00036 35.8 5.7 45 229-273 271-318 (556)
28 1yuz_A Nigerythrin; rubrythrin 61.3 4.2 0.00014 33.6 2.4 13 148-160 169-181 (202)
29 2kn9_A Rubredoxin; metalloprot 61.1 7.6 0.00026 27.3 3.3 14 148-161 25-38 (81)
30 1s24_A Rubredoxin 2; electron 59.7 8.7 0.0003 27.3 3.5 14 148-161 33-46 (87)
31 3a43_A HYPD, hydrogenase nicke 58.7 4.6 0.00016 31.3 2.1 22 141-162 61-82 (139)
32 4ayb_P DNA-directed RNA polyme 55.5 4.6 0.00016 25.2 1.2 12 150-161 3-14 (48)
33 3pwf_A Rubrerythrin; non heme 55.4 4.1 0.00014 32.7 1.3 12 149-160 137-148 (170)
34 1yk4_A Rubredoxin, RD; electro 55.3 14 0.00048 23.5 3.6 12 150-161 2-13 (52)
35 4feg_A Pyruvate oxidase; carba 54.7 12 0.00041 35.8 4.7 43 230-272 270-313 (603)
36 3h0g_L DNA-directed RNA polyme 54.4 7.3 0.00025 26.0 2.2 11 201-211 38-48 (63)
37 2gnr_A Conserved hypothetical 53.1 3.6 0.00012 32.2 0.6 16 145-160 42-57 (145)
38 3irb_A Uncharacterized protein 51.4 4 0.00014 31.9 0.6 14 147-160 44-57 (145)
39 3eya_A Pyruvate dehydrogenase 49.1 19 0.00064 34.0 5.1 42 230-273 259-300 (549)
40 2jrp_A Putative cytoplasmic pr 48.7 4.3 0.00015 28.5 0.3 11 150-160 18-28 (81)
41 2iht_A Carboxyethylarginine sy 48.6 22 0.00076 33.6 5.5 44 230-273 281-327 (573)
42 2jne_A Hypothetical protein YF 48.1 5.2 0.00018 29.1 0.7 12 201-212 61-72 (101)
43 1ybh_A Acetolactate synthase, 45.3 23 0.00079 33.6 5.1 45 229-273 271-318 (590)
44 2gmg_A Hypothetical protein PF 45.1 6.2 0.00021 29.1 0.8 12 149-160 66-77 (105)
45 1e2b_A Enzyme IIB-cellobiose; 43.6 6.5 0.00022 28.8 0.7 14 39-52 4-17 (106)
46 2vk8_A Pyruvate decarboxylase 42.8 14 0.00046 35.0 3.0 44 229-272 271-317 (563)
47 3lq1_A 2-succinyl-5-enolpyruvy 42.5 34 0.0012 32.4 5.7 42 232-273 285-329 (578)
48 3cvo_A Methyltransferase-like 42.2 31 0.0011 28.2 4.7 40 227-267 21-60 (202)
49 2epq_A POZ-, at HOOK-, and zin 41.3 40 0.0014 19.1 4.0 20 144-163 4-23 (45)
50 1pno_A NAD(P) transhydrogenase 41.0 6.9 0.00024 31.4 0.5 43 214-256 73-118 (180)
51 1ozh_A ALS, acetolactate synth 40.3 34 0.0012 32.3 5.4 44 230-273 268-312 (566)
52 2c31_A Oxalyl-COA decarboxylas 39.5 24 0.00081 33.4 4.1 43 231-273 267-314 (568)
53 1djl_A Transhydrogenase DIII; 39.5 7.2 0.00025 32.1 0.4 44 213-256 94-140 (207)
54 2q28_A Oxalyl-COA decarboxylas 38.0 24 0.00081 33.3 3.8 42 231-272 265-309 (564)
55 3ec1_A YQEH GTPase; atnos1, at 37.8 19 0.00064 32.2 2.9 42 201-243 36-78 (369)
56 3h2y_A GTPase family protein; 36.6 24 0.00082 31.5 3.5 13 200-212 33-45 (368)
57 2fsv_C NAD(P) transhydrogenase 36.5 7.5 0.00026 31.9 0.0 44 213-256 95-141 (203)
58 3eya_A Pyruvate dehydrogenase 36.3 36 0.0012 32.0 4.8 28 23-50 186-213 (549)
59 3j21_g 50S ribosomal protein L 35.2 22 0.00075 22.6 2.1 14 200-213 27-41 (51)
60 2pgn_A Cyclohexane-1,2-dione h 35.0 32 0.0011 32.6 4.3 45 229-273 264-310 (589)
61 2bru_C NAD(P) transhydrogenase 34.8 14 0.00049 29.7 1.4 38 15-52 7-44 (186)
62 1d4o_A NADP(H) transhydrogenas 33.8 25 0.00087 28.2 2.7 43 214-256 72-117 (184)
63 2x7j_A 2-succinyl-5-enolpyruvy 33.7 62 0.0021 30.8 6.0 41 232-273 306-349 (604)
64 2pan_A Glyoxylate carboligase; 32.6 37 0.0013 32.4 4.3 44 229-272 286-332 (616)
65 4feg_A Pyruvate oxidase; carba 32.6 40 0.0014 32.1 4.5 29 22-50 196-224 (603)
66 1ovm_A Indole-3-pyruvate decar 32.1 22 0.00077 33.3 2.6 45 228-272 268-315 (552)
67 2vbf_A Branched-chain alpha-ke 31.5 26 0.00088 33.2 2.9 43 229-271 288-333 (570)
68 2ppt_A Thioredoxin-2; thiredox 31.3 1.4E+02 0.0049 22.3 6.9 65 200-270 33-108 (155)
69 1v5e_A Pyruvate oxidase; oxido 30.7 47 0.0016 31.5 4.6 44 228-274 261-308 (590)
70 2xig_A Ferric uptake regulatio 30.4 28 0.00094 26.8 2.4 52 102-162 58-111 (150)
71 3fxa_A SIS domain protein; str 30.4 34 0.0012 27.2 3.1 32 23-54 29-60 (201)
72 2ywx_A Phosphoribosylaminoimid 30.4 25 0.00085 27.8 2.1 26 27-52 39-64 (157)
73 1n5g_A 38-MER of DNA polymeras 29.9 9.9 0.00034 22.5 -0.2 14 200-213 23-37 (38)
74 2c31_A Oxalyl-COA decarboxylas 28.5 46 0.0016 31.4 4.1 29 22-50 197-225 (568)
75 1ozh_A ALS, acetolactate synth 27.6 53 0.0018 31.0 4.3 29 22-50 191-219 (566)
76 2fiy_A Protein FDHE homolog; F 27.3 37 0.0013 29.8 2.9 16 146-161 204-219 (309)
77 1l8d_A DNA double-strand break 27.3 19 0.00064 26.3 0.9 13 201-213 47-59 (112)
78 2vbi_A Pyruvate decarboxylase; 27.3 29 0.001 32.7 2.5 43 230-272 270-315 (566)
79 2ayj_A 50S ribosomal protein L 26.8 46 0.0016 21.5 2.6 14 147-160 16-29 (56)
80 3sho_A Transcriptional regulat 26.7 61 0.0021 25.2 4.0 31 23-54 24-54 (187)
81 1tvm_A PTS system, galactitol- 26.6 16 0.00053 26.9 0.3 14 39-52 22-35 (113)
82 1q6z_A BFD, BFDC, benzoylforma 26.0 40 0.0014 31.4 3.1 41 229-269 259-303 (528)
83 1ybh_A Acetolactate synthase, 26.0 60 0.002 30.7 4.4 28 23-50 199-226 (590)
84 3eyy_A Putative iron uptake re 25.5 35 0.0012 26.1 2.2 52 102-162 49-102 (145)
85 3nbm_A PTS system, lactose-spe 25.4 20 0.0007 26.3 0.8 15 38-52 6-20 (108)
86 1mzb_A Ferric uptake regulatio 25.4 26 0.00089 26.4 1.4 52 102-162 50-103 (136)
87 2akl_A PHNA-like protein PA012 25.3 18 0.00061 27.7 0.4 14 201-214 44-57 (138)
88 2wvg_A PDC, pyruvate decarboxy 25.1 33 0.0011 32.3 2.4 43 230-272 270-315 (568)
89 1ltl_A DNA replication initiat 25.1 42 0.0015 28.7 2.9 23 138-160 110-144 (279)
90 3s4e_A Dual specificity protei 24.6 29 0.001 26.0 1.6 30 26-55 65-98 (144)
91 3brc_A Conserved protein of un 24.6 44 0.0015 26.0 2.5 25 25-49 23-47 (156)
92 3kzf_A Carbamate kinase; argin 24.5 23 0.00079 31.3 1.0 43 12-60 162-204 (317)
93 2aus_D NOP10, ribosome biogene 24.4 37 0.0013 22.3 1.8 11 202-212 18-28 (60)
94 1twd_A Copper homeostasis prot 24.4 46 0.0016 28.4 2.9 30 23-52 153-182 (256)
95 2k4m_A TR8_protein, UPF0146 pr 24.2 1.4E+02 0.0047 23.4 5.4 40 231-270 30-71 (153)
96 2vbf_A Branched-chain alpha-ke 24.1 49 0.0017 31.2 3.4 28 25-52 215-242 (570)
97 1pft_A TFIIB, PFTFIIBN; N-term 24.0 35 0.0012 21.0 1.6 9 201-209 5-13 (50)
98 3mwm_A ZUR, putative metal upt 23.9 52 0.0018 24.8 2.9 55 102-162 45-99 (139)
99 2xhz_A KDSD, YRBH, arabinose 5 23.7 38 0.0013 26.3 2.2 28 27-54 37-64 (183)
100 1ytl_A Acetyl-COA decarboxylas 23.6 34 0.0012 27.3 1.8 24 26-50 22-46 (174)
101 2riq_A Poly [ADP-ribose] polym 23.5 22 0.00074 28.2 0.6 14 199-212 76-89 (160)
102 1m3s_A Hypothetical protein YC 23.3 54 0.0019 25.5 3.1 31 23-54 22-52 (186)
103 1t9b_A Acetolactate synthase, 23.2 67 0.0023 31.2 4.2 26 25-50 276-301 (677)
104 2bru_C NAD(P) transhydrogenase 23.0 14 0.00049 29.7 -0.5 43 214-256 80-125 (186)
105 1q6z_A BFD, BFDC, benzoylforma 22.8 65 0.0022 29.9 4.0 28 23-50 185-212 (528)
106 2l2q_A PTS system, cellobiose- 22.7 30 0.001 25.1 1.2 13 40-52 6-18 (109)
107 2w57_A Ferric uptake regulatio 22.6 41 0.0014 25.8 2.1 52 102-162 49-102 (150)
108 2q28_A Oxalyl-COA decarboxylas 22.1 44 0.0015 31.4 2.6 28 23-50 196-223 (564)
109 1t9b_A Acetolactate synthase, 21.9 45 0.0015 32.5 2.6 43 231-273 351-405 (677)
110 3nw0_A Non-structural maintena 21.9 34 0.0012 28.7 1.6 18 104-121 134-151 (238)
111 1wig_A KIAA1808 protein; LIM d 21.4 59 0.002 21.4 2.5 16 146-161 1-16 (73)
112 2js4_A UPF0434 protein BB2007; 21.1 37 0.0013 22.9 1.3 15 200-214 7-21 (70)
113 2x7j_A 2-succinyl-5-enolpyruvy 20.6 43 0.0015 31.9 2.2 37 24-60 229-276 (604)
114 1o97_D Electron transferring f 20.6 1E+02 0.0034 27.0 4.4 33 237-269 260-292 (320)
115 1zfo_A LAsp-1; LIM domain, zin 20.5 37 0.0012 18.8 1.0 14 201-214 3-16 (31)
116 2uz1_A Benzaldehyde lyase; thi 20.4 69 0.0023 30.1 3.6 28 23-50 189-216 (563)
117 2kr4_A Ubiquitin conjugation f 20.3 1.1E+02 0.0038 20.8 3.9 14 201-214 48-61 (85)
118 2epr_A POZ-, at HOOK-, and zin 20.3 51 0.0018 19.0 1.8 17 147-163 9-25 (48)
119 2o03_A Probable zinc uptake re 20.2 1.1E+02 0.0037 22.6 4.1 52 102-162 42-95 (131)
120 1vkr_A Mannitol-specific PTS s 20.1 20 0.00069 27.0 -0.2 16 38-53 13-28 (125)
No 1
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=8.1e-58 Score=402.19 Aligned_cols=214 Identities=32% Similarity=0.549 Sum_probs=178.3
Q ss_pred HHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCH
Q psy16867 28 INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNA 107 (275)
Q Consensus 28 l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 107 (275)
+++++++|++|++|||+||||||++|||||||+.+ |+|+++..+.++...|..+|+.+|+||.+.+. .+.+++||.
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~-Glw~~~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn~ 78 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPNL 78 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCCH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCC-cccccCCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCCH
Confidence 67899999999999999999999999999999998 99998644456778899999999999987753 446899999
Q ss_pred HHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCC
Q psy16867 108 NHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDG 187 (275)
Q Consensus 108 ~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 187 (275)
+|++|++|++.|++++|||||||+||++||.++|+|+||++...+|+.|++.+..+++.+.
T Consensus 79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~------------------- 139 (246)
T 1yc5_A 79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKK------------------- 139 (246)
T ss_dssp HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHH-------------------
T ss_pred HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999998765443211
Q ss_pred CcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---H---hhhccCcEE
Q psy16867 188 DVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---L---VKEHAKGYL 261 (275)
Q Consensus 188 d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~---~r~~~~~~~ 261 (275)
+....+|+||.|||.|||+||||||.+|++.++++.+++++||++||||||+.|.+ + ++. .++.+
T Consensus 140 --------~~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~-~g~~~ 210 (246)
T 1yc5_A 140 --------LESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVR-SGGKL 210 (246)
T ss_dssp --------TTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHH-HTCEE
T ss_pred --------hccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHH-cCCeE
Confidence 11124899999999999999999999999999999999999999999999999953 2 232 27899
Q ss_pred EEecCCCCCCCC
Q psy16867 262 GKGNVQTTPFSF 273 (275)
Q Consensus 262 v~iN~~~~~~~~ 273 (275)
|.||+++++++.
T Consensus 211 i~IN~~~~~~d~ 222 (246)
T 1yc5_A 211 VIVNLGETPFDD 222 (246)
T ss_dssp EEECSSCCTTGG
T ss_pred EEEeCCCCCCCc
Confidence 999999999864
No 2
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=2e-57 Score=401.07 Aligned_cols=217 Identities=32% Similarity=0.538 Sum_probs=178.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCC-CCCChHHHHhChHHHHHHHHHhhcCCCCCCC
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQFQDFLKSRRVRIRYWARNFVGWPRFSS 102 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (275)
|+.++++++++|++|++|||+||||||++|||||||+.+ |+|.++.. ..++...|..+|+.+|+||.+.+. .+.
T Consensus 1 m~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~-Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~---~~~- 75 (253)
T 1ma3_A 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGED-GLWRKYDPEEVASISGFKRNPRAFWEFSMEMKD---KLF- 75 (253)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECGGGSCC-----------CCSCSSCHHHHTBHHHHTTCHHHHHHHHHHTHH---HHT-
T ss_pred ChHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCC-cccccCChhheecHHHHhcCHHHHHHHHHHHHH---hcc-
Confidence 457799999999999999999999999999999999998 99997532 235677888999999999987753 334
Q ss_pred CCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhcc
Q psy16867 103 FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQE 182 (275)
Q Consensus 103 ~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~ 182 (275)
++||.+|++|++|++.|++++|||||||+||++||.++|+|+||++...+|+.|++.++.+++.+.
T Consensus 76 ~~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~-------------- 141 (253)
T 1ma3_A 76 AEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVED-------------- 141 (253)
T ss_dssp CCCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGTHHH--------------
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999998754432211
Q ss_pred CCCCCCcccchhhhccCCCCCCCCCCC-eecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH------hhh
Q psy16867 183 MRPDGDVEMSEETISKFHVPQCPHCHG-DLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL------VKE 255 (275)
Q Consensus 183 ~~~~~d~~~~~~~~~~~~~P~Cp~Cgg-~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~------~r~ 255 (275)
+....+|+||+||| .|||+||||||.+|++.++.+.+++++||++||||||+.|.+. ++.
T Consensus 142 -------------~~~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~ 208 (253)
T 1ma3_A 142 -------------FNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKK 208 (253)
T ss_dssp -------------HHTTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHH
T ss_pred -------------hccCCCCCCCCCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHH
Confidence 12234899999999 9999999999999999999999999999999999999999532 222
Q ss_pred ccCcEEEEecCCCCCCCC
Q psy16867 256 HAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 256 ~~~~~~v~iN~~~~~~~~ 273 (275)
.++.+|.||+++++++.
T Consensus 209 -~g~~~i~iN~~~~~~d~ 225 (253)
T 1ma3_A 209 -AGAKMIIVNAEPTMADP 225 (253)
T ss_dssp -HTCEEEEEESSCCTTGG
T ss_pred -cCCeEEEEeCCCCCCCC
Confidence 37899999999999864
No 3
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=4.9e-57 Score=402.34 Aligned_cols=235 Identities=29% Similarity=0.506 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCC-CCChHHHHhChHHHHHHHHHhhcCCCCCCCC
Q psy16867 25 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFSSF 103 (275)
Q Consensus 25 ~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (275)
+.++++++++|++|++|||+||||||++|||||||+.+ |+|+++... ..+.+.|..+|+.+|.||.+... .+.++
T Consensus 8 ~~~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~-Glw~~~~~~~l~~~~~f~~~p~~~w~fy~~~~~---~~~~~ 83 (273)
T 3riy_A 8 SSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAG-GYWRKWQAQDLATPLAFAHNPSRVWEFYHYRRE---VMGSK 83 (273)
T ss_dssp BCCHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGG-GEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHH---HHTTC
T ss_pred HHHHHHHHHHHHhCCcEEEEECcccchhhCCCcccccc-chhhhCChhhcCCHHHHhhCHHHHHHHHHHHHH---HhhhC
Confidence 34689999999999999999999999999999999998 999875432 34677888999999999875432 23588
Q ss_pred CCCHHHHHHHHHHH----cCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhh
Q psy16867 104 QPNANHYALKQMED----NEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIE 179 (275)
Q Consensus 104 ~P~~~h~~L~~L~~----~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~ 179 (275)
+||.+|++|++|++ .|++++||||||||||++||+++|+|+||++...+|+.|++.+... .+|.|...
T Consensus 84 ~Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~--------~~p~~~~~ 155 (273)
T 3riy_A 84 EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENY--------KSPICPAL 155 (273)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECC--------CSSSSGGG
T ss_pred CCCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCccccc--------ccchhhhh
Confidence 99999999999985 5899999999999999999999999999999999999999986421 13333333
Q ss_pred hccCCCCCCcccchhhhccCCCCCC--CCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH---hh
Q psy16867 180 SQEMRPDGDVEMSEETISKFHVPQC--PHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL---VK 254 (275)
Q Consensus 180 ~~~~~~~~d~~~~~~~~~~~~~P~C--p~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~---~r 254 (275)
.....|+.+.. ...+....+|+| |.|||.|||+||||||.+|++.++++.+++++||++||||||++|.+. ++
T Consensus 156 ~~~~~~~~~~~--~~~~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~~ 233 (273)
T 3riy_A 156 SGKGAPEPGTQ--DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAP 233 (273)
T ss_dssp TTCCCCSTTCC--CCCCCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHH
T ss_pred hcccCCccccc--ccccccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhHH
Confidence 22223333221 111222348999 789999999999999999999999999999999999999999999743 22
Q ss_pred --hccCcEEEEecCCCCCCCC
Q psy16867 255 --EHAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 255 --~~~~~~~v~iN~~~~~~~~ 273 (275)
...++.++.||+++|+++.
T Consensus 234 ~a~~~g~~~v~IN~~~t~~d~ 254 (273)
T 3riy_A 234 QVAARGVPVAEFNTETTPATN 254 (273)
T ss_dssp HHHHTTCCEEEEESSCCTTGG
T ss_pred HHHHCCCEEEEECCCCCCCCc
Confidence 2247899999999999875
No 4
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=1.6e-56 Score=400.88 Aligned_cols=224 Identities=28% Similarity=0.486 Sum_probs=188.8
Q ss_pred CCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCccc-CCCccccccCCC-CCChHHHHhChHHHHHHHHHhhcCCC
Q psy16867 21 KPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRS-EGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWP 98 (275)
Q Consensus 21 ~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~-~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (275)
+.+...++++++++|++|++|||+||||||++|||||||+ .+ |+|+.+... ..++..|..+|+.+|+||.+...
T Consensus 28 ~~~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~-Glw~~~~p~~~~~~~~f~~~p~~~w~~~~~~~~--- 103 (290)
T 3u31_A 28 KDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSN-SIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISS--- 103 (290)
T ss_dssp CCCEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTT-SGGGGSCHHHHTBHHHHHHCHHHHHHHHHHHHH---
T ss_pred cchhHHHHHHHHHHHHhCCCEEEEeCCccccccCCcccccccc-chhhcCCHHHhhCHHhhhhCHHHHHHHHHHHhh---
Confidence 4466788999999999999999999999999999999999 67 999975422 23567788999999999976653
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhh
Q psy16867 99 RFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMI 178 (275)
Q Consensus 99 ~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~ 178 (275)
. .+++||.+|++|++|++.|++++|||||||+||++||.++|+|+||++...+|+.|++.+..++. |..
T Consensus 104 ~-~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~----------~~~ 172 (290)
T 3u31_A 104 D-YEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKI----------MLQ 172 (290)
T ss_dssp H-SCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTG----------GGS
T ss_pred h-ccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHh----------hhc
Confidence 2 58899999999999999999999999999999999999999999999999999999987643321 100
Q ss_pred hhccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH---hhh
Q psy16867 179 ESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL---VKE 255 (275)
Q Consensus 179 ~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~---~r~ 255 (275)
+ ...+....+|+|| |||.|||+||||||.+|++.++.+.+++++||++||||||++|++. ++.
T Consensus 173 ---------~----~~~~~~~~~P~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~~~ 238 (290)
T 3u31_A 173 ---------K----TSHFMHQLPPECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHF 238 (290)
T ss_dssp ---------T----TSSTTTSSSCBCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHHHH
T ss_pred ---------c----cccccccCCCCCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHHHH
Confidence 0 0111223489999 9999999999999999999999999999999999999999999854 222
Q ss_pred --ccCcEEEEecCCCCCCCC
Q psy16867 256 --HAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 256 --~~~~~~v~iN~~~~~~~~ 273 (275)
..++.+|.||+++++++.
T Consensus 239 a~~~g~~~v~IN~~~t~~~~ 258 (290)
T 3u31_A 239 ACKKKKKIVEINISKTYITN 258 (290)
T ss_dssp HHHTTCCEEEEESSCCTTTT
T ss_pred HHHcCCEEEEECCCCCCCCC
Confidence 236899999999999874
No 5
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=2.5e-56 Score=393.31 Aligned_cols=211 Identities=30% Similarity=0.495 Sum_probs=183.0
Q ss_pred HHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCC-CCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCH
Q psy16867 29 NKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNA 107 (275)
Q Consensus 29 ~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 107 (275)
++++++|++|++|||+||||||++|||||||+.+ |+|+++.. +.++...|..+|+.+|.||.+.+. .+.+++||.
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~-Glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~---~~~~~~Pn~ 78 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRYRPEELANPQAFAKDPEKVWKWYAWRME---KVFNAQPNK 78 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTT-CHHHHSCHHHHSSHHHHHHCHHHHHHHHHHHHH---HHHHCCCCH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCC-cCccCCCHHhcccHHHHhcCHHHHHHHHHHHHH---HhCcCCCCH
Confidence 6789999999999999999999999999999998 99998532 235778888999999999987653 235789999
Q ss_pred HHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCC
Q psy16867 108 NHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDG 187 (275)
Q Consensus 108 ~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 187 (275)
+|++|++|++.|++++|||||||+||++||+++|+|+||++...+|+.|++.+..++
T Consensus 79 ~H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~----------------------- 135 (249)
T 1m2k_A 79 AHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES----------------------- 135 (249)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSS-----------------------
T ss_pred HHHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchh-----------------------
Confidence 999999999999999999999999999999999999999999999999998753211
Q ss_pred CcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHHh---h--hccCcEEE
Q psy16867 188 DVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILV---K--EHAKGYLG 262 (275)
Q Consensus 188 d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~~---r--~~~~~~~v 262 (275)
. + ....+|+||+|||.|||+||||||.+|++.++.+.+++++||++||||||+.|.+.. + ...++.+|
T Consensus 136 ~--~-----~~~~~p~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i 208 (249)
T 1m2k_A 136 A--P-----KIPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAII 208 (249)
T ss_dssp C--C-----CSSSCCBCSSSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEE
T ss_pred h--c-----cCCCCCCCCCCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEE
Confidence 0 1 112379999999999999999999999999999999999999999999999996432 1 22378999
Q ss_pred EecCCCCCCCC
Q psy16867 263 KGNVQTTPFSF 273 (275)
Q Consensus 263 ~iN~~~~~~~~ 273 (275)
.||+++++++.
T Consensus 209 ~IN~~~~~~d~ 219 (249)
T 1m2k_A 209 EINPDETPLTP 219 (249)
T ss_dssp EECSSCCTTGG
T ss_pred EEeCCCCCCCc
Confidence 99999999864
No 6
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=1.1e-53 Score=383.89 Aligned_cols=219 Identities=30% Similarity=0.452 Sum_probs=178.4
Q ss_pred CcHHHHHHHHHHHHh--CCcEEEEeCccccccCCCCCcccCCCccccccCCC-------CCChHHHHhChHHHHHHHHHh
Q psy16867 23 VEESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-------PVQFQDFLKSRRVRIRYWARN 93 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~--a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 93 (275)
.++.++++++++|++ |++|||+||||||++|||||||+.+.|+|...... .++...|..+|+.+|.||.+.
T Consensus 3 ~~~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~ 82 (289)
T 1q1a_A 3 STEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82 (289)
T ss_dssp CTHHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHH
Confidence 466889999999999 99999999999999999999999843999874321 234556889999888888664
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHHHHHh
Q psy16867 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILED 171 (275)
Q Consensus 94 ~~~~~~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~ 171 (275)
+ ..+++||.+|++|++|++.|++++||||||||||++||. ++|+|+||++..++|+.|++.+..+++...+..
T Consensus 83 ~-----~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~ 157 (289)
T 1q1a_A 83 Y-----PGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAE 157 (289)
T ss_dssp C-----SSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTC
T ss_pred h-----hCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhh
Confidence 3 248899999999999999999999999999999999995 589999999999999999988766554332210
Q ss_pred cCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHH---HH----------HhhhCC
Q psy16867 172 LNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKI---DH----------LVRSCD 238 (275)
Q Consensus 172 ~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~---~~----------~~~~~d 238 (275)
. +...+|+||+|||.|||+||||||.+|+..++.+ .+ .+.+||
T Consensus 158 --------------~----------~~~~~P~C~~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~D 213 (289)
T 1q1a_A 158 --------------H----------PIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQP 213 (289)
T ss_dssp --------------S----------SCCSCCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCC
T ss_pred --------------c----------cCCCCccCCCCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCC
Confidence 0 1124899999999999999999999998764433 33 356899
Q ss_pred EEEEEccCccchHH---hhhcc-CcEEEEecCCCCC
Q psy16867 239 GVLVLGSSLTVPIL---VKEHA-KGYLGKGNVQTTP 270 (275)
Q Consensus 239 liLvlGts~~v~~~---~r~~~-~~~~v~iN~~~~~ 270 (275)
++||||||++|++. ++... ++.+|.||+++++
T Consensus 214 lllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~ 249 (289)
T 1q1a_A 214 LVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVG 249 (289)
T ss_dssp EEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCT
T ss_pred EEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999843 33333 6899999999986
No 7
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=5.1e-54 Score=383.23 Aligned_cols=213 Identities=31% Similarity=0.524 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHh--CCcEEEEeCccccccCCCCCcccCCCccccccCCCC-------CChHHHHhChHHHHHHHHHhhc
Q psy16867 25 ESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-------VQFQDFLKSRRVRIRYWARNFV 95 (275)
Q Consensus 25 ~~~l~~l~~~l~~--a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 95 (275)
...++.++++|++ |++|||+||||||++|||||||+++.|+|....... ++...|..+|+.+|.|+...+
T Consensus 8 ~~~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~~- 86 (285)
T 3glr_A 8 KLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELY- 86 (285)
T ss_dssp CCCHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHHS-
T ss_pred ccCHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHhh-
Confidence 4469999999997 899999999999999999999998449998753222 345567889988777765432
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhc--CCceEEecccccceeeCCCCcccchhHHHHHHHhcC
Q psy16867 96 GWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLN 173 (275)
Q Consensus 96 ~~~~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG--~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~ 173 (275)
. .+++||.+|++|++|++.|++.+||||||||||++|| +++|+|+||++...+|+.|++.+....+...
T Consensus 87 --~--~~a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~----- 157 (285)
T 3glr_A 87 --P--GNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRAD----- 157 (285)
T ss_dssp --T--TSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHH-----
T ss_pred --h--ccCCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHH-----
Confidence 2 4789999999999999999999999999999999999 5799999999999999999998765443221
Q ss_pred ChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHH-
Q psy16867 174 PDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPIL- 252 (275)
Q Consensus 174 p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~- 252 (275)
+....+|+||.|||.|||+||||||.+|...+ .+.+.+.+||++||||||++|++.
T Consensus 158 ----------------------i~~~~~P~C~~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDlllviGTSl~V~Paa 214 (285)
T 3glr_A 158 ----------------------VMADRVPRCPVCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADLLLILGTSLEVEPFA 214 (285)
T ss_dssp ----------------------HHTTCCCBCTTTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSEEEEESCCCCEETTG
T ss_pred ----------------------hhcCCCCCCCCCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCEEEEeCCCCccccHH
Confidence 12235899999999999999999999998766 446778999999999999999753
Q ss_pred --hhh-ccCcEEEEecCCCCC
Q psy16867 253 --VKE-HAKGYLGKGNVQTTP 270 (275)
Q Consensus 253 --~r~-~~~~~~v~iN~~~~~ 270 (275)
+.. ..++.+|.||++++.
T Consensus 215 ~l~~~~~~~~~~v~IN~~~~~ 235 (285)
T 3glr_A 215 SLTEAVRSSVPRLLINRDLVG 235 (285)
T ss_dssp GGGGSSCTTSCEEEEESSCCT
T ss_pred HHHHHHhCCCcEEEECCCCcC
Confidence 222 225689999999985
No 8
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=4e-53 Score=384.84 Aligned_cols=219 Identities=28% Similarity=0.485 Sum_probs=183.3
Q ss_pred CcHHHHHHHHHHHHh--CCcEEEEeCccccccCCCCCcccCCCccccccCCCC-------CChHHHHhChHHHHHHHHHh
Q psy16867 23 VEESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-------VQFQDFLKSRRVRIRYWARN 93 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~--a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 93 (275)
.....++.++++|++ |++|||+||||||++|||||||+++.|+|....... ++...|..+|+.+|.||...
T Consensus 26 ~~~~~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~ 105 (323)
T 1j8f_A 26 LDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKEL 105 (323)
T ss_dssp CSSSSHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHH
Confidence 344569999999997 899999999999999999999998339999854322 24456778999888887433
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhc--CCceEEecccccceeeCC--CCcccchhHHHHHH
Q psy16867 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAFRVMCLG--CDYEIDRHKFQKIL 169 (275)
Q Consensus 94 ~~~~~~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG--~~~v~elHG~~~~~~C~~--C~~~~~~~~~~~~~ 169 (275)
+ . .+++||.+|++|++|++.|++++|||||||+||++|| .++|+|+||++...+|+. |++.+..+...+.
T Consensus 106 ~---~--~~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~- 179 (323)
T 1j8f_A 106 Y---P--GQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEK- 179 (323)
T ss_dssp S---S--SSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHH-
T ss_pred h---h--CcCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHh-
Confidence 2 1 4899999999999999999999999999999999999 479999999999999999 9998765443221
Q ss_pred HhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccc
Q psy16867 170 EDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249 (275)
Q Consensus 170 ~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v 249 (275)
+....+|+||+|||.|||+||||||.+|+..++.+.+++++||++||||||++|
T Consensus 180 --------------------------i~~~~~P~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V 233 (323)
T 1j8f_A 180 --------------------------IFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQV 233 (323)
T ss_dssp --------------------------HHTTCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCS
T ss_pred --------------------------hccCCCCCCcCCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCccc
Confidence 122358999999999999999999999999999999999999999999999999
Q ss_pred hHH---hhhcc-CcEEEEecCCCCCCCC
Q psy16867 250 PIL---VKEHA-KGYLGKGNVQTTPFSF 273 (275)
Q Consensus 250 ~~~---~r~~~-~~~~v~iN~~~~~~~~ 273 (275)
++. +++.. ++.++.||+++++.+.
T Consensus 234 ~P~a~l~~~~~~~~~~v~IN~~~t~~~~ 261 (323)
T 1j8f_A 234 QPFASLISKAPLSTPRLLINKEKAGQSD 261 (323)
T ss_dssp HHHHHHHTTSCTTCCEEEEESSCCCCCC
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCCc
Confidence 854 33333 4677899999998754
No 9
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=6.3e-53 Score=387.78 Aligned_cols=223 Identities=29% Similarity=0.438 Sum_probs=167.5
Q ss_pred CCCCCcHHHHHHHHHHHHh--CCcEEEEeCccccccCCCCCcccCCCccccccCCCC-------CChHHHHhChHHHHHH
Q psy16867 19 KHKPVEESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-------VQFQDFLKSRRVRIRY 89 (275)
Q Consensus 19 ~~~~~~~~~l~~l~~~l~~--a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~ 89 (275)
.+++.++..++.++++|++ |++|||+||||||++|||||||+.+.|+|....... ++...|..+|+.+|.|
T Consensus 7 ~~~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~~f~~~ 86 (361)
T 1q14_A 7 VSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL 86 (361)
T ss_dssp CSSCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHHHHHHH
Confidence 3445667889999999999 999999999999999999999998339998754322 2445678899888887
Q ss_pred HHHhhcCCCCCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHH
Q psy16867 90 WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQK 167 (275)
Q Consensus 90 ~~~~~~~~~~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~ 167 (275)
|.+.+ ..+++||.+|++|++|++.|++++||||||||||++||. ++|+|+||++..++|+.|++.+....+..
T Consensus 87 ~~~~~-----~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~ 161 (361)
T 1q14_A 87 AKELY-----PGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKS 161 (361)
T ss_dssp HTTTS-----CCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHH
T ss_pred HHHHh-----hCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHH
Confidence 75432 248899999999999999999999999999999999995 58999999999999999998876554432
Q ss_pred HHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHH-------------Hh
Q psy16867 168 ILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDH-------------LV 234 (275)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~-------------~~ 234 (275)
.+.. . ....+|+||.|||.|||+||||||.+|...++.+.+ .+
T Consensus 162 ~~~~--------------~----------~~~~~P~Cp~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~ 217 (361)
T 1q14_A 162 KLAE--------------H----------PIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKH 217 (361)
T ss_dssp HTTS--------------S----------SCSCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC-------
T ss_pred HHhh--------------c----------ccCCCCCCcCCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhh
Confidence 2110 0 112379999999999999999999999887665554 45
Q ss_pred hhCCEEEEEccCccchHH---hhhcc-CcEEEEecCCCCC
Q psy16867 235 RSCDGVLVLGSSLTVPIL---VKEHA-KGYLGKGNVQTTP 270 (275)
Q Consensus 235 ~~~dliLvlGts~~v~~~---~r~~~-~~~~v~iN~~~~~ 270 (275)
.+||++||||||++|++. ++... ++.+|.||+++++
T Consensus 218 ~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~ 257 (361)
T 1q14_A 218 PQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVG 257 (361)
T ss_dssp -CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCH
T ss_pred ccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCcc
Confidence 689999999999999853 33322 6899999999985
No 10
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=2.3e-53 Score=371.40 Aligned_cols=202 Identities=29% Similarity=0.439 Sum_probs=161.1
Q ss_pred CCcEEEEeCccccccCCCCCcccCCCccccccCC-CCCChHHHHhChHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHH
Q psy16867 38 YNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQME 116 (275)
Q Consensus 38 a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~h~~L~~L~ 116 (275)
|++|||+||||||++|||||||+.+ |+|+++.. +..+...|..+|+.+|+||.+...... -.+++||.+|++|++|+
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~-Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~-~~~a~Pn~~H~~La~L~ 78 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAAD-GLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQ-QPEIQPNAAHLALAKLQ 78 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSS-CEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHT-STTCCCCHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCC-CCccCCCHhHcccHHHHhhCHHHHHHHHHHHHHHhh-hcCCCCCHHHHHHHHHH
Confidence 6899999999999999999999998 99997532 235678889999999999986543211 03699999999999999
Q ss_pred H-cCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhh
Q psy16867 117 D-NEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEET 195 (275)
Q Consensus 117 ~-~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~ 195 (275)
+ .|++++|||||||+||++||+++|+|+||++...+|+.|++.+...+ +
T Consensus 79 ~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~-----------------------~------- 128 (235)
T 1s5p_A 79 DALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG-----------------------D------- 128 (235)
T ss_dssp HHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS-----------------------C-------
T ss_pred HhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh-----------------------h-------
Confidence 8 69999999999999999999999999999999999999998653211 0
Q ss_pred hccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchH---Hhhhc--cCcEEEEecCCCCC
Q psy16867 196 ISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI---LVKEH--AKGYLGKGNVQTTP 270 (275)
Q Consensus 196 ~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~---~~r~~--~~~~~v~iN~~~~~ 270 (275)
+....+|.|+.|||.|||+||||||. + ..++++.+++++||++||||||++|.+ ++++. .++.++.||+++++
T Consensus 129 ~~~~~~p~c~~Cgg~lrP~vv~FGE~-p-~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~ 206 (235)
T 1s5p_A 129 VTPEDKCHCCQFPAPLRPHVVWFGEM-P-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQ 206 (235)
T ss_dssp CCSSCCC-------CEEEEECCTTSC-C-SSHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC
T ss_pred ccCCCCCCCCCCCCeecCcEEEeCCC-H-HHHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCC
Confidence 11234899999999999999999999 6 468899999999999999999999953 33332 26899999999999
Q ss_pred CCC
Q psy16867 271 FSF 273 (275)
Q Consensus 271 ~~~ 273 (275)
++.
T Consensus 207 ~~~ 209 (235)
T 1s5p_A 207 VGN 209 (235)
T ss_dssp ---
T ss_pred CCc
Confidence 875
No 11
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-51 Score=379.04 Aligned_cols=239 Identities=27% Similarity=0.394 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCC-------CCCChHHHHhChHHHHHHHHHhhcCCC
Q psy16867 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-------RPVQFQDFLKSRRVRIRYWARNFVGWP 98 (275)
Q Consensus 26 ~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (275)
+.++.++++|++|++|||+||||||++|||||||+.+ |+|..... ..+++..|..+|+.+|.|+. ..+.
T Consensus 34 ~~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~-Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~~---~~~~ 109 (354)
T 2hjh_A 34 FTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSE-GFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIAN---MVLP 109 (354)
T ss_dssp CSHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTT-SHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHGG---GGCC
T ss_pred HHHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcc-hHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHHH---HHcc
Confidence 4699999999999999999999999999999999998 99987421 23567788899988776652 2122
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHHHHHhcC-Ch
Q psy16867 99 RFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLN-PD 175 (275)
Q Consensus 99 ~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~-p~ 175 (275)
..++||.+|++|++|++.|++++||||||||||++||. ++|+|+||+++..+|+.|+..+..+.+.+.+...+ |.
T Consensus 110 --~~~~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~P~ 187 (354)
T 2hjh_A 110 --PEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPL 187 (354)
T ss_dssp --CCSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCCCB
T ss_pred --ccCCCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccCCCc
Confidence 36789999999999999999999999999999999995 79999999999999999999887766665554332 32
Q ss_pred hhhhh---ccCCCC------CCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccC
Q psy16867 176 LMIES---QEMRPD------GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 246 (275)
Q Consensus 176 ~~~~~---~~~~~~------~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts 246 (275)
+.... ....++ ++..+... . ....+.|..|||.|||+||||||.+|...++.+.+++.+||++||||||
T Consensus 188 Cp~C~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTS 265 (354)
T 2hjh_A 188 CPYCYKKRREYFPEGYNNKVGVAASQGS-M-SERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTS 265 (354)
T ss_dssp CTTTHHHHHHHCCC-------------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCC
T ss_pred Cccccccccccccccccccccccccccc-c-ccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcC
Confidence 22110 000011 11111111 1 1235678999999999999999999999999999999999999999999
Q ss_pred ccchHH---hhhc-cCcEEEEecCCCCCCC
Q psy16867 247 LTVPIL---VKEH-AKGYLGKGNVQTTPFS 272 (275)
Q Consensus 247 ~~v~~~---~r~~-~~~~~v~iN~~~~~~~ 272 (275)
++|++. ++.. .++.+|.||+++++.+
T Consensus 266 L~V~Paa~lv~~~~~~~~~v~IN~~~t~~~ 295 (354)
T 2hjh_A 266 LKVAPVSEIVNMVPSHVPQVLINRDPVKHA 295 (354)
T ss_dssp CCEETGGGHHHHSCTTSCEEEEESSCCTTS
T ss_pred CCchhHHHHHHHHhcCCcEEEEcCCCCCCC
Confidence 999853 3332 2679999999998753
No 12
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-51 Score=381.01 Aligned_cols=238 Identities=26% Similarity=0.346 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCC-------CCCChHHHHhChHHHHHHHHHhhcCCC
Q psy16867 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-------RPVQFQDFLKSRRVRIRYWARNFVGWP 98 (275)
Q Consensus 26 ~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (275)
..+++++++|++|++|||+||||||++|||||||+.+ |+|..... ..++...|..+|+.+|.++.. . +.
T Consensus 172 ~~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~-GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~Fy~~~r~-~--~~ 247 (492)
T 4iao_A 172 FTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSE-GFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANM-V--LP 247 (492)
T ss_dssp CSHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTT-SHHHHHHTSCCSCGGGGGBHHHHHHCHHHHHHHGGG-G--CC
T ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCccccCch-HHHHhhhhcCCCCHHHhcCHHHHhhChHHHHHHHHH-h--hC
Confidence 5789999999999999999999999999999999998 99987522 234667888999876554321 1 11
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHHHHHhc-CCh
Q psy16867 99 RFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDL-NPD 175 (275)
Q Consensus 99 ~~~~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~-~p~ 175 (275)
..++||.+|++|++|++.|++.+||||||||||++||. ++|+|+||++...+|+.|++.+..+.+.+.+... .|.
T Consensus 248 --~~~~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~P~ 325 (492)
T 4iao_A 248 --PEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPL 325 (492)
T ss_dssp --CSSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCCCB
T ss_pred --CcCCCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCCCC
Confidence 36789999999999999999999999999999999994 7999999999999999999998877666555433 333
Q ss_pred hhhhh---------ccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccC
Q psy16867 176 LMIES---------QEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 246 (275)
Q Consensus 176 ~~~~~---------~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts 246 (275)
+.... ....++++.+... ......|.|+.|||.|||+||||||.+|...++.+.+.+.+||++||||||
T Consensus 326 Cp~Cg~~~~~~~~~~~~~~dg~~~~~~--~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTS 403 (492)
T 4iao_A 326 CPYCYKKRREYFPEGYNNKVGVAASQG--SMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTS 403 (492)
T ss_dssp CTTTHHHHHHHSTTCCCCC----------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCC
T ss_pred Ccccccccccccccccccccccccccc--cccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccC
Confidence 33221 0112222222111 122346899999999999999999999999999999999999999999999
Q ss_pred ccchHHh---hh-ccCcEEEEecCCCCCC
Q psy16867 247 LTVPILV---KE-HAKGYLGKGNVQTTPF 271 (275)
Q Consensus 247 ~~v~~~~---r~-~~~~~~v~iN~~~~~~ 271 (275)
++|++.+ .. +.++.+|.||+++++-
T Consensus 404 L~VyPaA~Lv~~a~~~~p~ViIN~ept~~ 432 (492)
T 4iao_A 404 LKVAPVSEIVNMVPSHVPQVLINRDPVKH 432 (492)
T ss_dssp CCEETGGGHHHHSBTTSCEEEEESSCCTT
T ss_pred CCccchhhHHHHHhcCCcEEEEcCCCCCC
Confidence 9998543 22 2357899999999863
No 13
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-50 Score=359.47 Aligned_cols=213 Identities=28% Similarity=0.462 Sum_probs=164.8
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSS 102 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (275)
.+++++++++++|++|++|||+||||||++|||||||+.+ |+|+..... .+|.. ...+.+
T Consensus 29 ~l~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~-Glw~~~~~~--------~~p~~-----------~~~f~~ 88 (318)
T 3k35_A 29 ELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPH-GVWTMEERG--------LAPKF-----------DTTFES 88 (318)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTT-CHHHHHTTT--------CCCCC-----------SSCTTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCC-Ccchhhhcc--------CCHHH-----------HHHhhh
Confidence 4578999999999999999999999999999999999998 999863211 12210 012358
Q ss_pred CCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhh
Q psy16867 103 FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIES 180 (275)
Q Consensus 103 ~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~ 180 (275)
++||.+|++|++|++.|++++||||||||||++||. ++|+|+||+++..+|+.|++.+.+..+....
T Consensus 89 a~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~----------- 157 (318)
T 3k35_A 89 ARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTM----------- 157 (318)
T ss_dssp CCCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCC-----------
T ss_pred CCCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhc-----------
Confidence 899999999999999999999999999999999996 6899999999999999999987543210000
Q ss_pred ccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHHhhh-----
Q psy16867 181 QEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKE----- 255 (275)
Q Consensus 181 ~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~~r~----- 255 (275)
...++++. . .....+.|+.|||.|||+||||||.+|.+.++.+.+.+++||++||||||++|...++.
T Consensus 158 -~~~p~~~~--C----~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~ 230 (318)
T 3k35_A 158 -GLKATGRL--C----TVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATK 230 (318)
T ss_dssp -SSCEEEEE--C----CC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHH
T ss_pred -ccCCCCCc--C----cccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHH
Confidence 00000000 0 00013456789999999999999999999999999999999999999999999743221
Q ss_pred ccCcEEEEecCCCCCCCC
Q psy16867 256 HAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 256 ~~~~~~v~iN~~~~~~~~ 273 (275)
..+..++.||+++|++|.
T Consensus 231 ~~G~~vviIN~~~t~~d~ 248 (318)
T 3k35_A 231 RRGGRLVIVNLQPTKHDR 248 (318)
T ss_dssp HTTCEEEEECSSCCTTGG
T ss_pred hcCCEEEEECCCCCCCCC
Confidence 236899999999999875
No 14
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=1.6e-49 Score=360.57 Aligned_cols=213 Identities=29% Similarity=0.452 Sum_probs=168.3
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCcccCCCccccccCCCCCChHHHHhChHHHHHHHHHhhcCCCCCCC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSS 102 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (275)
.++++++.++++|++|++|||+||||||++|||||||+.+ |+|+..... .++. + +..+.+
T Consensus 29 ~l~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~-Glw~~~~~~--------~~p~---------~--~~~f~~ 88 (355)
T 3pki_A 29 ELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPH-GVWTMEERG--------LAPK---------F--DTTFES 88 (355)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTT-CHHHHHHTT--------CCCC---------C--SSCTTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCC-Cccchhhcc--------CChH---------H--HHHHhh
Confidence 4578999999999999999999999999999999999998 999853210 1121 0 013358
Q ss_pred CCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcC--CceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhh
Q psy16867 103 FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIES 180 (275)
Q Consensus 103 ~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~ 180 (275)
++||.+|++|++|++.|++.+||||||||||++||. ++|+|+||+++..+|+.|++.+.+..+..
T Consensus 89 a~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~------------- 155 (355)
T 3pki_A 89 ARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVG------------- 155 (355)
T ss_dssp CCCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCS-------------
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhh-------------
Confidence 899999999999999999999999999999999995 68999999999999999999875432100
Q ss_pred ccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccchHHhhh-----
Q psy16867 181 QEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPILVKE----- 255 (275)
Q Consensus 181 ~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~~~~r~----- 255 (275)
......+.... .....+.|+.|||.|||+||||||.+|...++.+.+.+++||++||||||++|...+..
T Consensus 156 -~~~~~~~~~~C----~~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~ 230 (355)
T 3pki_A 156 -TMGLKATGRLC----TVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATK 230 (355)
T ss_dssp -CCSSCEEEEEC----CCCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHH
T ss_pred -hcccCCCCCcc----ccccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHH
Confidence 00000000000 00013456799999999999999999999999999999999999999999999743221
Q ss_pred ccCcEEEEecCCCCCCCC
Q psy16867 256 HAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 256 ~~~~~~v~iN~~~~~~~~ 273 (275)
..+..++.||+++|+++.
T Consensus 231 ~~G~~vviIN~~pT~~d~ 248 (355)
T 3pki_A 231 RRGGRLVIVNLQPTKHDR 248 (355)
T ss_dssp HTTCEEEEECSSCCTTGG
T ss_pred hcCCEEEEECCCCCCCCC
Confidence 236899999999999875
No 15
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=85.32 E-value=0.35 Score=38.70 Aligned_cols=11 Identities=36% Similarity=1.153 Sum_probs=9.5
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
..+|..|++.+
T Consensus 132 ~y~C~~Cg~~~ 142 (165)
T 2lcq_A 132 RYVCIGCGRKF 142 (165)
T ss_dssp CEEESSSCCEE
T ss_pred EEECCCCCCcc
Confidence 56899999987
No 16
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=81.58 E-value=1.3 Score=31.15 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=41.9
Q ss_pred ceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeecccEeEeCCCCCHhHHHH
Q psy16867 150 RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEK 229 (275)
Q Consensus 150 ~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~ 229 (275)
...|.-|+....+.++....-.....-... .|.+-=-+.++.+ .-+||.||.. |||..+|.+..++
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~~en~~ei~-------kDr~~Fl~~~e~F-~FkCP~CgEE------FyG~~Lp~~EaeK 73 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEEIV-------KDRERFLAQVEEF-VFKCPVCGEE------FYGKTLPRREAEK 73 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHT-------TCHHHHHHHHHHS-EEECTTTCCE------EETTSSCTTTHHH
T ss_pred cccCCcCCCccCHHHHHHHHHhhccHHHHH-------hhHHHHHHHHHHH-hhcCCCccHH------HhcccCChHHHHH
Confidence 458999999998887764332111000000 0000000011111 6789999875 7899999887777
Q ss_pred HHHHhhh
Q psy16867 230 IDHLVRS 236 (275)
Q Consensus 230 ~~~~~~~ 236 (275)
..+.++.
T Consensus 74 VFELLNd 80 (95)
T 2k5c_A 74 VFELLND 80 (95)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 7777663
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.55 E-value=1.1 Score=38.38 Aligned_cols=43 Identities=19% Similarity=0.501 Sum_probs=29.3
Q ss_pred CceEEecccccceeeCCCCcccchhHHHHHHHhcCChhhhhhccCCCCCCcccchhhhccCCCCCCCCCCCeec
Q psy16867 139 KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLK 212 (275)
Q Consensus 139 ~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~P~Cp~Cgg~lr 212 (275)
--|+.++|. .|..|+-..+...+.... ....+..||+||..|-
T Consensus 191 ~avv~v~~~----~C~GC~~~lppq~~~~i~---------------------------~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 191 TSIVTIKKQ----ACGGCFIRLNDKIYTEVL---------------------------TSGDMITCPYCGRILY 233 (256)
T ss_dssp GSEEECBTT----BCTTTCCBCCHHHHHHHH---------------------------HSSSCEECTTTCCEEE
T ss_pred ceEEEeeCC----ccCCCCeeeCHHHHHHHH---------------------------CCCCEEECCCCCeeEE
Confidence 357788775 699999987655443211 1234889999998763
No 18
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=79.10 E-value=2.1 Score=34.17 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIST 51 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~ 51 (275)
.....+++++++|++|++-+|++|.|+..
T Consensus 19 ~~~~~v~~aa~~L~~AkrPvil~G~g~~~ 47 (170)
T 3cf4_G 19 SKAVSPEMAAKIISKAKRPLLMVGTLALD 47 (170)
T ss_dssp CEECCHHHHHHHHHHCSSEEEEECSTTCC
T ss_pred cCHHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 34456999999999999999999999763
No 19
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=77.91 E-value=0.74 Score=37.83 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=10.7
Q ss_pred ccceeeCCCCccc
Q psy16867 148 AFRVMCLGCDYEI 160 (275)
Q Consensus 148 ~~~~~C~~C~~~~ 160 (275)
...++|..||+.+
T Consensus 153 ~~~~~C~~CG~~~ 165 (191)
T 1lko_A 153 ATKWRCRNCGYVH 165 (191)
T ss_dssp EEEEEETTTCCEE
T ss_pred CceEEECCCCCEe
Confidence 4468999999976
No 20
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=75.24 E-value=2 Score=26.84 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.2
Q ss_pred ccceeeCCCCcccc
Q psy16867 148 AFRVMCLGCDYEID 161 (275)
Q Consensus 148 ~~~~~C~~C~~~~~ 161 (275)
+...+|..|++.++
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 35679999999874
No 21
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=74.77 E-value=1 Score=34.00 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=12.5
Q ss_pred EecccccceeeCCCCccc
Q psy16867 143 EMHGTAFRVMCLGCDYEI 160 (275)
Q Consensus 143 elHG~~~~~~C~~C~~~~ 160 (275)
++.---...+|..|++.+
T Consensus 66 ~i~~~p~~~~C~~CG~~~ 83 (119)
T 2kdx_A 66 DIVDEKVELECKDCSHVF 83 (119)
T ss_dssp EEEEECCEEECSSSSCEE
T ss_pred EEEeccceEEcCCCCCEE
Confidence 344334467899999986
No 22
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=68.60 E-value=11 Score=24.29 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=10.6
Q ss_pred cceeeCCCCcccc
Q psy16867 149 FRVMCLGCDYEID 161 (275)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (275)
...+|..|++.|+
T Consensus 2 ~~y~C~vCGyvYd 14 (54)
T 4rxn_A 2 KKYTCTVCGYIYD 14 (54)
T ss_dssp CCEEETTTCCEEC
T ss_pred CceECCCCCeEEC
Confidence 4579999999874
No 23
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=66.86 E-value=7 Score=26.61 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.6
Q ss_pred ccccceeeCCCCcccc
Q psy16867 146 GTAFRVMCLGCDYEID 161 (275)
Q Consensus 146 G~~~~~~C~~C~~~~~ 161 (275)
..+...+|..|++.++
T Consensus 3 ~~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 3 IDEGKYECEACGYIYE 18 (70)
T ss_dssp CCSSCEEETTTCCEEC
T ss_pred CCCceEEeCCCCEEEc
Confidence 3456789999999874
No 24
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=65.08 E-value=3.8 Score=27.96 Aligned_cols=11 Identities=18% Similarity=0.839 Sum_probs=9.0
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
...|..|+.+.
T Consensus 28 ~Y~C~~CG~~~ 38 (70)
T 1twf_L 28 KYICAECSSKL 38 (70)
T ss_dssp CEECSSSCCEE
T ss_pred EEECCCCCCcc
Confidence 45799999975
No 25
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=64.40 E-value=7.4 Score=25.16 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.6
Q ss_pred cceeeCCCCcccc
Q psy16867 149 FRVMCLGCDYEID 161 (275)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (275)
...+|..|++.+.
T Consensus 2 ~~y~C~~CGyvYd 14 (55)
T 2v3b_B 2 RKWQCVVCGFIYD 14 (55)
T ss_dssp CEEEETTTCCEEE
T ss_pred CcEEeCCCCeEEC
Confidence 4579999999874
No 26
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=64.20 E-value=7.5 Score=24.80 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=10.6
Q ss_pred cceeeCCCCcccc
Q psy16867 149 FRVMCLGCDYEID 161 (275)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (275)
...+|..|++.+.
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4679999999874
No 27
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=62.17 E-value=10 Score=35.85 Aligned_cols=45 Identities=18% Similarity=-0.027 Sum_probs=32.1
Q ss_pred HHHHHhhhCCEEEEEccCccch---HHhhhccCcEEEEecCCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVP---ILVKEHAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~---~~~r~~~~~~~v~iN~~~~~~~~ 273 (275)
.+.+.+.++|+||.+|+.+.-. .........++|.|+.++..++.
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 318 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDP 318 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSEEEEEESSCSCCCT
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCeEEEECCCCccCCC
Confidence 4556778999999999998532 23333334589999998877654
No 28
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=61.35 E-value=4.2 Score=33.61 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.9
Q ss_pred ccceeeCCCCccc
Q psy16867 148 AFRVMCLGCDYEI 160 (275)
Q Consensus 148 ~~~~~C~~C~~~~ 160 (275)
...++|..|++.+
T Consensus 169 ~~~~~C~~CG~i~ 181 (202)
T 1yuz_A 169 DKFHLCPICGYIH 181 (202)
T ss_dssp CCEEECSSSCCEE
T ss_pred CcEEEECCCCCEE
Confidence 4578999999976
No 29
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=61.09 E-value=7.6 Score=27.27 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=11.7
Q ss_pred ccceeeCCCCcccc
Q psy16867 148 AFRVMCLGCDYEID 161 (275)
Q Consensus 148 ~~~~~C~~C~~~~~ 161 (275)
....+|..|++.|+
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 46789999999874
No 30
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=59.70 E-value=8.7 Score=27.34 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=11.7
Q ss_pred ccceeeCCCCcccc
Q psy16867 148 AFRVMCLGCDYEID 161 (275)
Q Consensus 148 ~~~~~C~~C~~~~~ 161 (275)
+...+|..|++.|+
T Consensus 33 m~~y~C~vCGyvYD 46 (87)
T 1s24_A 33 YLKWICITCGHIYD 46 (87)
T ss_dssp CCEEEETTTTEEEE
T ss_pred CceEECCCCCeEec
Confidence 56789999999874
No 31
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=58.67 E-value=4.6 Score=31.30 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=15.7
Q ss_pred eEEecccccceeeCCCCcccch
Q psy16867 141 VIEMHGTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 141 v~elHG~~~~~~C~~C~~~~~~ 162 (275)
-.++.---...+|.+|++.+..
T Consensus 61 ~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp EEEEEEECCEEEETTTCCEEEG
T ss_pred EEEEEecCCcEECCCCCCEEec
Confidence 4455555567899999998754
No 32
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=55.46 E-value=4.6 Score=25.23 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=8.5
Q ss_pred ceeeCCCCcccc
Q psy16867 150 RVMCLGCDYEID 161 (275)
Q Consensus 150 ~~~C~~C~~~~~ 161 (275)
...|..|+++++
T Consensus 3 iY~C~rCg~~fs 14 (48)
T 4ayb_P 3 VYRCGKCWKTFT 14 (48)
T ss_dssp --CCCCTTTTCC
T ss_pred EEEeeccCCCcc
Confidence 357999999875
No 33
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=55.36 E-value=4.1 Score=32.73 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.9
Q ss_pred cceeeCCCCccc
Q psy16867 149 FRVMCLGCDYEI 160 (275)
Q Consensus 149 ~~~~C~~C~~~~ 160 (275)
..++|..||+.+
T Consensus 137 ~~~~C~~CG~i~ 148 (170)
T 3pwf_A 137 KVYICPICGYTA 148 (170)
T ss_dssp CEEECTTTCCEE
T ss_pred CeeEeCCCCCee
Confidence 457899999976
No 34
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=55.29 E-value=14 Score=23.50 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.9
Q ss_pred ceeeCCCCcccc
Q psy16867 150 RVMCLGCDYEID 161 (275)
Q Consensus 150 ~~~C~~C~~~~~ 161 (275)
..+|..|++.+.
T Consensus 2 ~~~C~~CGyvYd 13 (52)
T 1yk4_A 2 KLSCKICGYIYD 13 (52)
T ss_dssp EEEESSSSCEEE
T ss_pred cEEeCCCCeEEC
Confidence 478999999874
No 35
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=54.73 E-value=12 Score=35.83 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=31.3
Q ss_pred HHHHhhhCCEEEEEccCccchHHhh-hccCcEEEEecCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVK-EHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r-~~~~~~~v~iN~~~~~~~ 272 (275)
+.+.+.++|+||.+|+.+......+ .+.+.++|.|+.++..++
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 313 (603)
T 4feg_A 270 ANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLG 313 (603)
T ss_dssp HHHHHHHCSEEEEESCCCTTTTTTTTTTTCSEEEEEESCGGGTT
T ss_pred HHHHHHhCCEEEEECCCCCcccccccCCCCCeEEEEeCCHHHhC
Confidence 4556789999999999987533322 233689999999887665
No 36
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=54.42 E-value=7.3 Score=25.99 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=8.9
Q ss_pred CCCCCCCCCee
Q psy16867 201 VPQCPHCHGDL 211 (275)
Q Consensus 201 ~P~Cp~Cgg~l 211 (275)
.-+|+.||..+
T Consensus 38 ~iRC~~CG~RI 48 (63)
T 3h0g_L 38 VIRCRECGHRV 48 (63)
T ss_dssp CCCCSSSCCCC
T ss_pred ceECCCCCcEE
Confidence 56999999764
No 37
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=53.14 E-value=3.6 Score=32.22 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=11.7
Q ss_pred cccccceeeCCCCccc
Q psy16867 145 HGTAFRVMCLGCDYEI 160 (275)
Q Consensus 145 HG~~~~~~C~~C~~~~ 160 (275)
.|.+...+|..|++.+
T Consensus 42 ~g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIF 57 (145)
T ss_dssp TTCCEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEE
Confidence 3455667899999865
No 38
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=51.35 E-value=4 Score=31.89 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=10.0
Q ss_pred cccceeeCCCCccc
Q psy16867 147 TAFRVMCLGCDYEI 160 (275)
Q Consensus 147 ~~~~~~C~~C~~~~ 160 (275)
.+-..+|..|++.+
T Consensus 44 rL~~~rC~~CG~~~ 57 (145)
T 3irb_A 44 KIIGSKCSKCGRIF 57 (145)
T ss_dssp CCEEEECTTTCCEE
T ss_pred eEEEEEeCCCCcEE
Confidence 33456799999865
No 39
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=49.13 E-value=19 Score=33.96 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhhccCcEEEEecCCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~~~~~~~v~iN~~~~~~~~ 273 (275)
+.+.+.++|+||.+|+.+..... .+.+.++|.|+.++..++.
T Consensus 259 ~~~~~~~aDlvl~iG~~~~~~~~--~~~~~~~i~id~d~~~~~~ 300 (549)
T 3eya_A 259 GFHTMMNADTLVLLGTQFPYRAF--YPTDAKIIQIDINPASIGA 300 (549)
T ss_dssp HHHHHHHCSEEEEESCCCCCGGG--SCSSSEEEEEESCGGGTTS
T ss_pred HHHHHHhCCEEEEECCCCCcccc--CCCCCeEEEEeCCHHHhCC
Confidence 44567899999999998864322 2335789999988876653
No 40
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=48.66 E-value=4.3 Score=28.54 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=7.4
Q ss_pred ceeeCCCCccc
Q psy16867 150 RVMCLGCDYEI 160 (275)
Q Consensus 150 ~~~C~~C~~~~ 160 (275)
..+|..|+..+
T Consensus 18 ~~~C~~C~~~~ 28 (81)
T 2jrp_A 18 TAHCETCAKDF 28 (81)
T ss_dssp EEECTTTCCEE
T ss_pred ceECccccccC
Confidence 45677777765
No 41
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=48.58 E-value=22 Score=33.65 Aligned_cols=44 Identities=11% Similarity=0.000 Sum_probs=30.4
Q ss_pred HHHHhhhCCEEEEEccC-ccchHHhhh-c-cCcEEEEecCCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSS-LTVPILVKE-H-AKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts-~~v~~~~r~-~-~~~~~v~iN~~~~~~~~ 273 (275)
+.+.+.++|+||.+|+. +....+... . .+.++|.|+.++..++.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 327 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPR 327 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHCCSSCCEEEEEESSCCSCTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccCCCCCCeEEEEeCCHHHhCC
Confidence 45567889999999998 643211111 1 35799999999887654
No 42
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=48.12 E-value=5.2 Score=29.08 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=9.3
Q ss_pred CCCCCCCCCeec
Q psy16867 201 VPQCPHCHGDLK 212 (275)
Q Consensus 201 ~P~Cp~Cgg~lr 212 (275)
.+.||.|+.+|.
T Consensus 61 ~a~CPdC~q~Le 72 (101)
T 2jne_A 61 KALCPDCHQPLQ 72 (101)
T ss_dssp EEECTTTCSBCE
T ss_pred cccCcchhhHHH
Confidence 578999987764
No 43
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=45.34 E-value=23 Score=33.64 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=31.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~~~ 273 (275)
.+.+.+.++|+||.+|+.+..... -....+.++|.|+.++..++.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 318 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGK 318 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTTS
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhCC
Confidence 345567889999999998854321 112235789999999887654
No 44
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.12 E-value=6.2 Score=29.10 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=9.8
Q ss_pred cceeeCCCCccc
Q psy16867 149 FRVMCLGCDYEI 160 (275)
Q Consensus 149 ~~~~C~~C~~~~ 160 (275)
...+|-+|+..+
T Consensus 66 ~p~~C~~CG~~F 77 (105)
T 2gmg_A 66 KPAQCRKCGFVF 77 (105)
T ss_dssp CCCBBTTTCCBC
T ss_pred ECcChhhCcCee
Confidence 456899999986
No 45
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=43.62 E-value=6.5 Score=28.82 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=12.2
Q ss_pred CcEEEEeCcccccc
Q psy16867 39 NKILVVTGAGISTE 52 (275)
Q Consensus 39 ~~ivv~tGAGiS~~ 52 (275)
++|++.+|+|+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 47999999999875
No 46
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=42.79 E-value=14 Score=35.01 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=29.2
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.+.++|+||.+|+.+.-..+ .....+..+|.|+.++..++
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 317 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIR 317 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEET
T ss_pred HHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEEC
Confidence 345577899999999998843321 11122568899988875443
No 47
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=42.51 E-value=34 Score=32.41 Aligned_cols=42 Identities=7% Similarity=-0.203 Sum_probs=30.2
Q ss_pred HHhhhCCEEEEEccCccch---HHhhhccCcEEEEecCCCCCCCC
Q psy16867 232 HLVRSCDGVLVLGSSLTVP---ILVKEHAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 232 ~~~~~~dliLvlGts~~v~---~~~r~~~~~~~v~iN~~~~~~~~ 273 (275)
+.+.++|+||.+|+.+... .+.+...+.++|.|+.++..++.
T Consensus 285 ~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 329 (578)
T 3lq1_A 285 IDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDP 329 (578)
T ss_dssp HHHTCCSEEEEESSCCSCHHHHHHHHHCCSSEEEEECTTCCCCCT
T ss_pred cccCCCCEEEEeCCcccchhHHHHHhcCCCCEEEEECCCCCcCCC
Confidence 3567899999999975432 34443346899999999876653
No 48
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=42.19 E-value=31 Score=28.24 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=27.8
Q ss_pred HHHHHHHhhhCCEEEEEccCccchHHhhhccCcEEEEecCC
Q psy16867 227 MEKIDHLVRSCDGVLVLGSSLTVPILVKEHAKGYLGKGNVQ 267 (275)
Q Consensus 227 ~~~~~~~~~~~dliLvlGts~~v~~~~r~~~~~~~v~iN~~ 267 (275)
.+-....+.++..|||+|||.++-.+++.+ ++.++.|-.+
T Consensus 21 ~~~L~~~l~~a~~VLEiGtGySTl~lA~~~-~g~VvtvE~d 60 (202)
T 3cvo_A 21 AEALRMAYEEAEVILEYGSGGSTVVAAELP-GKHVTSVESD 60 (202)
T ss_dssp HHHHHHHHHHCSEEEEESCSHHHHHHHTST-TCEEEEEESC
T ss_pred HHHHHHHhhCCCEEEEECchHHHHHHHHcC-CCEEEEEeCC
Confidence 333444667899999999997666667644 5677766543
No 49
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.30 E-value=40 Score=19.14 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=14.3
Q ss_pred ecccccceeeCCCCcccchh
Q psy16867 144 MHGTAFRVMCLGCDYEIDRH 163 (275)
Q Consensus 144 lHG~~~~~~C~~C~~~~~~~ 163 (275)
.|-.-....|..|++.+...
T Consensus 4 ~h~~~k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 4 GSSGEKPYSCPVCGLRFKRK 23 (45)
T ss_dssp CCSSCCSSEETTTTEECSCH
T ss_pred CcCCCCCCcCCCCCcccCCH
Confidence 35555567899999987543
No 50
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=40.99 E-value=6.9 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=33.5
Q ss_pred cEeEeCCCCCHh---HHHHHHHHhhhCCEEEEEccCccchHHhhhc
Q psy16867 214 DIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVPILVKEH 256 (275)
Q Consensus 214 ~vv~f~E~~~~~---~~~~~~~~~~~~dliLvlGts~~v~~~~r~~ 256 (275)
||+|-.-.+|-+ .++++...+.+.|++||||..-.|.+.+++.
T Consensus 73 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~d 118 (180)
T 1pno_A 73 NVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTD 118 (180)
T ss_dssp HHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTC
T ss_pred eEEEEeeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhccC
Confidence 666655556654 4778888999999999999999998776643
No 51
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=40.33 E-value=34 Score=32.27 Aligned_cols=44 Identities=18% Similarity=-0.028 Sum_probs=28.8
Q ss_pred HHHHhhhCCEEEEEccCccchHHhhh-ccCcEEEEecCCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSLTVPILVKE-HAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~~v~~~~r~-~~~~~~v~iN~~~~~~~~ 273 (275)
+.+.+.++|+||.+|+.+........ +.+..+|.|+.++..++.
T Consensus 268 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 312 (566)
T 1ozh_A 268 GDRLLQLADLVICIGYSPVEYEPAMWNSGNATLVHIDVLPAYEER 312 (566)
T ss_dssp HHHHHHHCSEEEEESCCGGGSCGGGTCCSCSEEEEEESSCCCCBT
T ss_pred HHHHHHhCCEEEEECCCCCcCCccccCCCCCcEEEEeCCHHHhCC
Confidence 34567789999999995422211111 225789999999877654
No 52
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=39.47 E-value=24 Score=33.38 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=29.2
Q ss_pred HHHhhhCCEEEEEccCccchHH---h-hhc-cCcEEEEecCCCCCCCC
Q psy16867 231 DHLVRSCDGVLVLGSSLTVPIL---V-KEH-AKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 231 ~~~~~~~dliLvlGts~~v~~~---~-r~~-~~~~~v~iN~~~~~~~~ 273 (275)
.+.+.++|+||.+|+.+.-... . ... .+.++|.|+.++..++.
T Consensus 267 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~ 314 (568)
T 2c31_A 267 AFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDS 314 (568)
T ss_dssp HHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTS
T ss_pred HhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcC
Confidence 3467789999999998853211 1 111 36789999998876643
No 53
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=39.45 E-value=7.2 Score=32.07 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=34.5
Q ss_pred ccEeEeCCCCCHh---HHHHHHHHhhhCCEEEEEccCccchHHhhhc
Q psy16867 213 PDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVPILVKEH 256 (275)
Q Consensus 213 P~vv~f~E~~~~~---~~~~~~~~~~~~dliLvlGts~~v~~~~r~~ 256 (275)
.||+|-.-.+|-+ .++++...+.+.|++||||..-.|.+.+++.
T Consensus 94 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~d 140 (207)
T 1djl_A 94 LNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQED 140 (207)
T ss_dssp HHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHC
T ss_pred CcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccccC
Confidence 4666666666654 5788888999999999999999998777653
No 54
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=37.99 E-value=24 Score=33.30 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHHhhhCCEEEEEccCccch-HHhh--hccCcEEEEecCCCCCCC
Q psy16867 231 DHLVRSCDGVLVLGSSLTVP-ILVK--EHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 231 ~~~~~~~dliLvlGts~~v~-~~~r--~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.++|+||.+|+.+.-. ...+ ...+.++|.|+.++..++
T Consensus 265 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 309 (564)
T 2q28_A 265 SFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEID 309 (564)
T ss_dssp HHHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGGGTT
T ss_pred HhHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHHHhc
Confidence 34677899999999988532 1111 123578999998887665
No 55
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=37.81 E-value=19 Score=32.24 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=8.9
Q ss_pred CCCCCCCCCeecccEeEeCCCCCHhHHHHHHH-HhhhCCEEEEE
Q psy16867 201 VPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDH-LVRSCDGVLVL 243 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~vv~f~E~~~~~~~~~~~~-~~~~~dliLvl 243 (275)
...|.+|.....=+-+.-- .++.+.+.+..+ ...+++++|.|
T Consensus 36 ~~~C~RC~~l~hy~~~~~v-~~~~e~f~~~L~~~~~~~~lil~V 78 (369)
T 3ec1_A 36 EVICQRCFRLKHYNEVQDV-PLDDDDFLSMLHRIGESKALVVNI 78 (369)
T ss_dssp ------------------------CHHHHHHHHHHHHCCEEEEE
T ss_pred CEEchhHHHhhccccccCC-cCCHHHHHHHHHHhhccCcEEEEE
Confidence 5889999765443322211 133333444333 33667655443
No 56
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=36.57 E-value=24 Score=31.52 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCCCCCCCCCeec
Q psy16867 200 HVPQCPHCHGDLK 212 (275)
Q Consensus 200 ~~P~Cp~Cgg~lr 212 (275)
..+.|.+|.....
T Consensus 33 ~~~~C~Rc~~l~h 45 (368)
T 3h2y_A 33 EQVICQRCFRLKH 45 (368)
T ss_dssp -------------
T ss_pred CCcEEhhhhhhhc
Confidence 3689999976544
No 57
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=36.48 E-value=7.5 Score=31.87 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=34.2
Q ss_pred ccEeEeCCCCCHh---HHHHHHHHhhhCCEEEEEccCccchHHhhhc
Q psy16867 213 PDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVPILVKEH 256 (275)
Q Consensus 213 P~vv~f~E~~~~~---~~~~~~~~~~~~dliLvlGts~~v~~~~r~~ 256 (275)
.||+|-.-..|-+ .++++...+.+.|++||||..-.|.+.+++.
T Consensus 95 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~d 141 (203)
T 2fsv_C 95 MNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTD 141 (203)
T ss_dssp HHHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSC
T ss_pred ccEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcC
Confidence 4666666566654 4778888999999999999999998776643
No 58
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=36.29 E-value=36 Score=31.95 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|++|++.+|++|.|.+
T Consensus 186 ~~~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 186 PEEEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCch
Confidence 3467899999999999999999999985
No 59
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.18 E-value=22 Score=22.58 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=10.2
Q ss_pred CCCCCCCCCCe-ecc
Q psy16867 200 HVPQCPHCHGD-LKP 213 (275)
Q Consensus 200 ~~P~Cp~Cgg~-lrP 213 (275)
.+-.|.+||.. |||
T Consensus 27 gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 27 GAKKCRKCGYKRLRP 41 (51)
T ss_dssp TCSSCSSSSSCCCEE
T ss_pred CceecCCCCCccccc
Confidence 36789999864 665
No 60
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=35.03 E-value=32 Score=32.65 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=30.2
Q ss_pred HHHHHhhhCCEEEEEccCccchHH-hhh-ccCcEEEEecCCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL-VKE-HAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~-~r~-~~~~~~v~iN~~~~~~~~ 273 (275)
.+.+.+.++|+||.+|+.+....+ ... ..+.++|.|+.++..++.
T Consensus 264 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 310 (589)
T 2pgn_A 264 SANDMMAAADFVLVLGSRLSDWGIAQGYITKMPKFVHVDTDPAVLGT 310 (589)
T ss_dssp HHHHHHHHCSEEEEESCCCCTTTTTTTTTCCCCSEEEEESCGGGTTS
T ss_pred HHHHHHhhCCEEEEECCCcccccccccccCCCCeEEEEeCCHHHHCC
Confidence 344567789999999998753221 121 135789999988876553
No 61
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=34.79 E-value=14 Score=29.69 Aligned_cols=38 Identities=8% Similarity=0.212 Sum_probs=22.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 15 SFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 15 ~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
+.-+++.+....+.++++++|++|+++||.-|=||.++
T Consensus 7 ~~~~~~g~~~~~~~~~~a~~l~~A~~ViIVPGYGmAVA 44 (186)
T 2bru_C 7 HSSQEVGEHREITAEETAELLKNSHSVIITPGYGMAVA 44 (186)
T ss_dssp -------------CHHHHHHHHHCSEEEEECSBHHHHT
T ss_pred cccccCCceeecCHHHHHHHHHhCCeEEEECChHHHHH
Confidence 34455566777888999999999999999988888765
No 62
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=33.77 E-value=25 Score=28.23 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=31.3
Q ss_pred cEeEeCCCCCHh---HHHHHHHHhhhCCEEEEEccCccchHHhhhc
Q psy16867 214 DIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVPILVKEH 256 (275)
Q Consensus 214 ~vv~f~E~~~~~---~~~~~~~~~~~~dliLvlGts~~v~~~~r~~ 256 (275)
||+|-.-.+|-+ .++++...+.+.|++||||..-.|.+.+++.
T Consensus 72 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~d 117 (184)
T 1d4o_A 72 NVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQED 117 (184)
T ss_dssp HHHHHHHTCCGGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHC
T ss_pred eEEEEEecCCHHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccC
Confidence 444443344433 4778888999999999999999998766653
No 63
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=33.66 E-value=62 Score=30.76 Aligned_cols=41 Identities=12% Similarity=-0.072 Sum_probs=28.4
Q ss_pred HHhhhCCEEEEEccCccch---HHhhhccCcEEEEecCCCCCCCC
Q psy16867 232 HLVRSCDGVLVLGSSLTVP---ILVKEHAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 232 ~~~~~~dliLvlGts~~v~---~~~r~~~~~~~v~iN~~~~~~~~ 273 (275)
+.++ +|+||.+|+.+... .+.....+.++|.|+.++..++.
T Consensus 306 ~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 349 (604)
T 2x7j_A 306 RKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDP 349 (604)
T ss_dssp HHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEEEEECTTCCCCCT
T ss_pred hhcC-CCEEEEECCcCccHHHHHHHhhCCCCeEEEECCCCCccCC
Confidence 3454 89999999988533 23332225689999999887654
No 64
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=32.63 E-value=37 Score=32.38 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=29.4
Q ss_pred HHHHHhhhCCEEEEEccCccchH---HhhhccCcEEEEecCCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPI---LVKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~---~~r~~~~~~~v~iN~~~~~~~ 272 (275)
.+.+.+.++|+||.+|+.+.-.. +-....+.++|.|+.++..++
T Consensus 286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 332 (616)
T 2pan_A 286 YGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIG 332 (616)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTT
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhC
Confidence 34556788999999999886311 111223578899998876554
No 65
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=32.58 E-value=40 Score=32.12 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 22 PVEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 22 ~~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
.+....+++++++|++|++.+|++|.|.+
T Consensus 196 ~~~~~~i~~~~~~l~~A~rPvIl~G~g~~ 224 (603)
T 4feg_A 196 EPDVQAVTRLTQTLLAAERPLIYYGIGAR 224 (603)
T ss_dssp BCCHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEECCCch
Confidence 35578899999999999999999999984
No 66
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=32.11 E-value=22 Score=33.35 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCEEEEEccCc---cchHHhhhccCcEEEEecCCCCCCC
Q psy16867 228 EKIDHLVRSCDGVLVLGSSL---TVPILVKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 228 ~~~~~~~~~~dliLvlGts~---~v~~~~r~~~~~~~v~iN~~~~~~~ 272 (275)
..+.+.+.++|+||.+|+.+ .+........+..+|.|+.++..++
T Consensus 268 ~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 315 (552)
T 1ovm_A 268 GAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG 315 (552)
T ss_dssp HHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET
T ss_pred HHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC
No 67
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=31.53 E-value=26 Score=33.15 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHhhhCCEEEEEccCccchHH---hhhccCcEEEEecCCCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPIL---VKEHAKGYLGKGNVQTTPF 271 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~---~r~~~~~~~v~iN~~~~~~ 271 (275)
.+.+.+.++|+||.+|+.+.-..+ .....+.++|.|+.++..+
T Consensus 288 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 333 (570)
T 2vbf_A 288 SLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGII 333 (570)
T ss_dssp HHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEE
T ss_pred HHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHh
Confidence 345677889999999998744322 1112246788888876543
No 68
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=31.33 E-value=1.4e+02 Score=22.30 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=34.9
Q ss_pred CCCCCCCCCCeeccc-EeEeCCCCCHhHHHHHHHHhhhCCEEEEEccCccch---------HHhhhc-cCcEEEEecCCC
Q psy16867 200 HVPQCPHCHGDLKPD-IVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP---------ILVKEH-AKGYLGKGNVQT 268 (275)
Q Consensus 200 ~~P~Cp~Cgg~lrP~-vv~f~E~~~~~~~~~~~~~~~~~dliLvlGts~~v~---------~~~r~~-~~~~~v~iN~~~ 268 (275)
..|.|..|+..+-+. ++- +....++.+. -...-+||.+.++.--+ .+.++. .+..++.||.+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~----l~~~~f~~~~--~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~ 106 (155)
T 2ppt_A 33 AGPKCGICGAGLITGKVAG----IDPAILARAE--RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA 106 (155)
T ss_dssp SCCBCTTTCCBSCCSSEEE----CCHHHHHHHT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CCCCCCcCCccccCCCCcc----CCHHHHHHHH--hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 368899998776433 222 2233333322 11234666777666544 233332 257888888776
Q ss_pred CC
Q psy16867 269 TP 270 (275)
Q Consensus 269 ~~ 270 (275)
.+
T Consensus 107 ~~ 108 (155)
T 2ppt_A 107 HP 108 (155)
T ss_dssp ST
T ss_pred cH
Confidence 43
No 69
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=30.72 E-value=47 Score=31.54 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCEEEEEccCccchH----HhhhccCcEEEEecCCCCCCCCC
Q psy16867 228 EKIDHLVRSCDGVLVLGSSLTVPI----LVKEHAKGYLGKGNVQTTPFSFL 274 (275)
Q Consensus 228 ~~~~~~~~~~dliLvlGts~~v~~----~~r~~~~~~~v~iN~~~~~~~~~ 274 (275)
..+.+.+.++|+||.+|+.+.... .. .+.++|.|+.++..+...
T Consensus 261 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~i~id~d~~~~~~~ 308 (590)
T 1v5e_A 261 KPANETILEADTVLFAGSNFPFSEVEGTFR---NVDNFIQIDIDPAMLGKR 308 (590)
T ss_dssp HHHHHHHHHCSEEEEESCCCTTTTTTTTTT---TCSEEEEEESCGGGTTSS
T ss_pred HHHHHHHHhCCEEEEECCCCcchhccccCC---CCCeEEEEeCCHHHHCCC
No 70
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.45 E-value=28 Score=26.85 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEe--cccccceeeCCCCcccch
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM--HGTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 162 (275)
...+.-.|+.|..|.+.|.+..+-..|-- ..|++ +..=+++.|..|++....
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~---------~~Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKSG---------RRYEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTTE---------EEEEESCSCCCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCCc---------eEEEecCCCCceEEEECCCCCEEEe
Confidence 55677889999999998988776554421 23333 122358999999997654
No 71
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=30.43 E-value=34 Score=27.20 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccccCC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTESG 54 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sG 54 (275)
.....++++.+.|.+++.-|++.|.|-|...+
T Consensus 29 l~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A 60 (201)
T 3fxa_A 29 TSEEALVKTVEKIAECTGKIVVAGCGTSGVAA 60 (201)
T ss_dssp SCHHHHHHHHHHHHHCSSCEEEECCTHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEecHHHHHH
Confidence 34578999999999996566788999885543
No 72
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=30.36 E-value=25 Score=27.78 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 27 DINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 27 ~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
..+++.++.++++.-||++|||+++.
T Consensus 39 ~p~~~~~~~~~a~~~ViIa~AG~aa~ 64 (157)
T 2ywx_A 39 TPELVEEIVKNSKADVFIAIAGLAAH 64 (157)
T ss_dssp CHHHHHHHHHHCCCSEEEEEEESSCC
T ss_pred CHHHHHHHHHhcCCCEEEEEcCchhh
Confidence 35667778887777889999999753
No 73
>1n5g_A 38-MER of DNA polymerase alpha catalytic subunit; zinc finger protein, DNA binding domain, transferase; NMR {Synthetic} SCOP: g.67.1.1
Probab=29.86 E-value=9.9 Score=22.47 Aligned_cols=14 Identities=43% Similarity=1.058 Sum_probs=11.3
Q ss_pred CCCCCCCCC-Ceecc
Q psy16867 200 HVPQCPHCH-GDLKP 213 (275)
Q Consensus 200 ~~P~Cp~Cg-g~lrP 213 (275)
..|.||.|+ |.|++
T Consensus 23 ~gp~C~~C~~g~l~~ 37 (38)
T 1n5g_A 23 TGPLCPACMKATLQP 37 (38)
T ss_dssp SCTTSTTCHHHHHTT
T ss_pred CCccCCCcCceEeEe
Confidence 479999998 77765
No 74
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=28.50 E-value=46 Score=31.37 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=25.6
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 22 PVEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 22 ~~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
.+....++++++.|++|++.+|++|.|..
T Consensus 197 ~~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 225 (568)
T 2c31_A 197 IPAEDAIARAADLIKNAKRPVIMLGKGAA 225 (568)
T ss_dssp CCCHHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECcccc
Confidence 34567899999999999999999999985
No 75
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=27.61 E-value=53 Score=30.96 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 22 PVEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 22 ~~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
.+....+++++++|++|++.+|++|.|..
T Consensus 191 ~~~~~~i~~~~~~l~~a~rpvil~G~g~~ 219 (566)
T 1ozh_A 191 AAPDDAIDQVAKLIAQAKNPIFLLGLMAS 219 (566)
T ss_dssp CSCHHHHHHHHHHHHHCSSEEEEECGGGG
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 34567899999999999999999999975
No 76
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.33 E-value=37 Score=29.81 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=12.4
Q ss_pred ccccceeeCCCCcccc
Q psy16867 146 GTAFRVMCLGCDYEID 161 (275)
Q Consensus 146 G~~~~~~C~~C~~~~~ 161 (275)
+...++.|+-|+.++.
T Consensus 204 ~G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 204 TGLRYLSCSLCACEWH 219 (309)
T ss_dssp CCEEEEEETTTCCEEE
T ss_pred CCcEEEEeCCCCCEEe
Confidence 5666899999998763
No 77
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.31 E-value=19 Score=26.26 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.7
Q ss_pred CCCCCCCCCeecc
Q psy16867 201 VPQCPHCHGDLKP 213 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP 213 (275)
.-.||.||..+.|
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3469999999986
No 78
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=27.26 E-value=29 Score=32.71 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHhhhCCEEEEEccCc---cchHHhhhccCcEEEEecCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSL---TVPILVKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~---~v~~~~r~~~~~~~v~iN~~~~~~~ 272 (275)
+.+.+.++|+||.+|+.+ .+....+...+.++|.|+.++..++
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 315 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVD 315 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEET
T ss_pred HHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeC
No 79
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=26.83 E-value=46 Score=21.47 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=10.5
Q ss_pred cccceeeCCCCccc
Q psy16867 147 TAFRVMCLGCDYEI 160 (275)
Q Consensus 147 ~~~~~~C~~C~~~~ 160 (275)
+++.+.|..|....
T Consensus 16 ~~~k~ICrkC~ARn 29 (56)
T 2ayj_A 16 VFLKKVCRKCGALN 29 (56)
T ss_dssp SCCCEEETTTCCEE
T ss_pred HhchhhhccccCcC
Confidence 45677899998865
No 80
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=26.72 E-value=61 Score=25.16 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccccCC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTESG 54 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sG 54 (275)
.....++++.+.|.+++ -|++.|.|-|...+
T Consensus 24 l~~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a 54 (187)
T 3sho_A 24 TQPEAIEAAVEAICRAD-HVIVVGMGFSAAVA 54 (187)
T ss_dssp CCHHHHHHHHHHHHHCS-EEEEECCGGGHHHH
T ss_pred CCHHHHHHHHHHHHhCC-EEEEEecCchHHHH
Confidence 45678999999999997 56778899886544
No 81
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=26.58 E-value=16 Score=26.94 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=12.2
Q ss_pred CcEEEEeCcccccc
Q psy16867 39 NKILVVTGAGISTE 52 (275)
Q Consensus 39 ~~ivv~tGAGiS~~ 52 (275)
++|++.+|+|+|++
T Consensus 22 kkIlvvC~sG~gTS 35 (113)
T 1tvm_A 22 RKIIVACGGAVATS 35 (113)
T ss_dssp EEEEEESCSCSSHH
T ss_pred cEEEEECCCCHHHH
Confidence 47999999999975
No 82
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=26.05 E-value=40 Score=31.42 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHhhhCCEEEEEccCccchHHh---h-hccCcEEEEecCCCC
Q psy16867 229 KIDHLVRSCDGVLVLGSSLTVPILV---K-EHAKGYLGKGNVQTT 269 (275)
Q Consensus 229 ~~~~~~~~~dliLvlGts~~v~~~~---r-~~~~~~~v~iN~~~~ 269 (275)
.+.+.+.++|+||.+|+.+....+. + .+.+.++|.|+.++.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~ 303 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPL 303 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHH
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHH
Confidence 4556788999999999987543221 1 123578888888764
No 83
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=26.02 E-value=60 Score=30.75 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....+++++++|++|++.+|++|.|..
T Consensus 199 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 226 (590)
T 1ybh_A 199 PEDSHLEQIVRLISESKKPVLYVGGGCL 226 (590)
T ss_dssp CCHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECcccc
Confidence 3567899999999999999999999975
No 84
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.45 E-value=35 Score=26.10 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEec--ccccceeeCCCCcccch
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 162 (275)
...+.-.|+.|..|.+.|.+..+-..|- ...|++. ..=.++.|..|++....
T Consensus 49 ~is~~TVYR~L~~L~e~Glv~~i~~~~~---------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 49 GINISTVYRTLELLEELGLVSHAHLGHG---------APTYHLADRHHHIHLVCRDCTNVIEA 102 (145)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEECGGG---------CEEEEETTSCCSEEEEESSSSCEEEE
T ss_pred CCCHhHHHHHHHHHHHCCcEEEEEeCCC---------ceEEEeCCCCCceEEEECCCCCEEEe
Confidence 5567788999999999888766554331 1223321 22357899999997643
No 85
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=25.39 E-value=20 Score=26.26 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.3
Q ss_pred CCcEEEEeCcccccc
Q psy16867 38 YNKILVVTGAGISTE 52 (275)
Q Consensus 38 a~~ivv~tGAGiS~~ 52 (275)
..+|+++++||+|++
T Consensus 6 ~mkIlL~C~aGmSTs 20 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSA 20 (108)
T ss_dssp CEEEEEEESSSSHHH
T ss_pred CceEEEECCCCCCHH
Confidence 347999999999865
No 86
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.39 E-value=26 Score=26.40 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEec--ccccceeeCCCCcccch
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 162 (275)
...+...|+.|..|.+.|.+..+-..| ....|++. ..=.++.|..|++....
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~---------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG---------GHAVFELADSGHHDHMVCVDTGEVIEF 103 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS---------SSCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC---------CceEEEeCCCCcceEEEECCCCCEEEe
Confidence 556778899999999988775543322 12334432 12247899999997654
No 87
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=25.30 E-value=18 Score=27.71 Aligned_cols=14 Identities=29% Similarity=0.921 Sum_probs=9.6
Q ss_pred CCCCCCCCCeeccc
Q psy16867 201 VPQCPHCHGDLKPD 214 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~ 214 (275)
.-.||.|+....|.
T Consensus 44 l~vCPeC~hEW~~~ 57 (138)
T 2akl_A 44 LLVCPECAHEWSPN 57 (138)
T ss_dssp SEEETTTTEEECTT
T ss_pred eEECCccccccCCc
Confidence 56788888766533
No 88
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=25.13 E-value=33 Score=32.33 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHhhhCCEEEEEccCc---cchHHhhhccCcEEEEecCCCCCCC
Q psy16867 230 IDHLVRSCDGVLVLGSSL---TVPILVKEHAKGYLGKGNVQTTPFS 272 (275)
Q Consensus 230 ~~~~~~~~dliLvlGts~---~v~~~~r~~~~~~~v~iN~~~~~~~ 272 (275)
+.+.+.++|+||.+|+.+ .+....+...+.++|.|+.++..++
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 315 (568)
T 2wvg_A 270 VEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVN 315 (568)
T ss_dssp HHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEET
T ss_pred HHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcC
No 89
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=25.08 E-value=42 Score=28.70 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=18.0
Q ss_pred CCceEEecccccc------------eeeCCCCccc
Q psy16867 138 NKKVIEMHGTAFR------------VMCLGCDYEI 160 (275)
Q Consensus 138 ~~~v~elHG~~~~------------~~C~~C~~~~ 160 (275)
..+++.+.|-+.+ ++|..|++..
T Consensus 110 igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~ 144 (279)
T 1ltl_A 110 IGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHH 144 (279)
T ss_dssp TTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEE
T ss_pred CCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEE
Confidence 3688888888765 5899999764
No 90
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=24.59 E-value=29 Score=26.02 Aligned_cols=30 Identities=33% Similarity=0.425 Sum_probs=20.8
Q ss_pred HHHHHHHHHH----HhCCcEEEEeCccccccCCC
Q psy16867 26 SDINKLKQFI----EKYNKILVVTGAGISTESGI 55 (275)
Q Consensus 26 ~~l~~l~~~l----~~a~~ivv~tGAGiS~~sGi 55 (275)
..++++.++| ++.+.|+|.+-||+|.++.+
T Consensus 65 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~~ 98 (144)
T 3s4e_A 65 SYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAI 98 (144)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHH
Confidence 4455555555 44578999999999987543
No 91
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.57 E-value=44 Score=25.99 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCccc
Q psy16867 25 ESDINKLKQFIEKYNKILVVTGAGI 49 (275)
Q Consensus 25 ~~~l~~l~~~l~~a~~ivv~tGAGi 49 (275)
...++.+++.|.+|++|||.|..+-
T Consensus 23 ~EEv~~Ir~~I~nakkIvV~t~N~k 47 (156)
T 3brc_A 23 SEEVEAIRKYIRSARRTVVPNWNAE 47 (156)
T ss_dssp HHHHHHHHHHHHHCSCEEECCCCHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCCch
Confidence 4678999999999999999777653
No 92
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=24.45 E-value=23 Score=31.31 Aligned_cols=43 Identities=28% Similarity=0.510 Sum_probs=31.8
Q ss_pred CCccccCCCCCCcHHHHHHHHHHHHhCCcEEEEeCccccccCCCCCccc
Q psy16867 12 RSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRS 60 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sGiP~fr~ 60 (275)
--+|.+|+..|..--+.+.+..+|+ .+.|+|++|-| |||.+.+
T Consensus 162 g~RrvV~sP~P~~iVe~~~I~~LL~-~G~IvI~aGGg-----GiPv~~~ 204 (317)
T 3kzf_A 162 GWRVVVPSPRPLEIVEYGVIKTLID-NNVLVICTNGG-----GIPCKRE 204 (317)
T ss_dssp CCCCEECCCCEEEETTHHHHHHHHH-TTCEEECCGGG-----CEEEEEC
T ss_pred CeeeecCCCCCcceECHHHHHHHHH-CCCEEEEeCCC-----CCCcccC
Confidence 3456888888877777777777776 67788888766 7776655
No 93
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=24.43 E-value=37 Score=22.28 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=8.5
Q ss_pred CCCCCCCCeec
Q psy16867 202 PQCPHCHGDLK 212 (275)
Q Consensus 202 P~Cp~Cgg~lr 212 (275)
..||.||+...
T Consensus 18 ~~CP~CG~~t~ 28 (60)
T 2aus_D 18 ETCPVCGEKTK 28 (60)
T ss_dssp SBCTTTCSBCE
T ss_pred ccCcCCCCccC
Confidence 46999998764
No 94
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=24.41 E-value=46 Score=28.41 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
.-...++.|+++++.++.|.|+.|+|+..+
T Consensus 153 ~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~ 182 (256)
T 1twd_A 153 DALQGLSKIMELIAHRDAPIIMAGAGVRAE 182 (256)
T ss_dssp STTTTHHHHHHHHTSSSCCEEEEESSCCTT
T ss_pred CHHHHHHHHHHHHHhhCCcEEEecCCcCHH
Confidence 345678888888887779999999999853
No 95
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=24.20 E-value=1.4e+02 Score=23.37 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=24.8
Q ss_pred HHHhhhCCEEEEEccCccc--hHHhhhccCcEEEEecCCCCC
Q psy16867 231 DHLVRSCDGVLVLGSSLTV--PILVKEHAKGYLGKGNVQTTP 270 (275)
Q Consensus 231 ~~~~~~~dliLvlGts~~v--~~~~r~~~~~~~v~iN~~~~~ 270 (275)
.+.....+-+||||+|... ....++..+..++.+.+.+..
T Consensus 30 ~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A 71 (153)
T 2k4m_A 30 IRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH 71 (153)
T ss_dssp HHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS
T ss_pred HhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccc
Confidence 3344445799999999984 334443345566666655544
No 96
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=24.06 E-value=49 Score=31.16 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy16867 25 ESDINKLKQFIEKYNKILVVTGAGISTE 52 (275)
Q Consensus 25 ~~~l~~l~~~l~~a~~ivv~tGAGiS~~ 52 (275)
...++++++.|++|++.+|++|.|+..+
T Consensus 215 ~~~i~~~~~~l~~a~rpvil~G~g~~~~ 242 (570)
T 2vbf_A 215 QVILSKIEESLKNAQKPVVIAGHEVISF 242 (570)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCEEEECcCcccc
Confidence 5679999999999999999999998743
No 97
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.00 E-value=35 Score=20.96 Aligned_cols=9 Identities=33% Similarity=0.999 Sum_probs=7.2
Q ss_pred CCCCCCCCC
Q psy16867 201 VPQCPHCHG 209 (275)
Q Consensus 201 ~P~Cp~Cgg 209 (275)
...||.|++
T Consensus 5 ~~~CP~C~~ 13 (50)
T 1pft_A 5 QKVCPACES 13 (50)
T ss_dssp CCSCTTTSC
T ss_pred cEeCcCCCC
Confidence 457999988
No 98
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.93 E-value=52 Score=24.83 Aligned_cols=55 Identities=9% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEecccccceeeCCCCcccch
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~ 162 (275)
...+.-.|+.|..|.+.|.+..+-..+--..|+.... ++.=+++.|..|++....
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~~------~~~H~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCST------GDHHHHLVCRACGKAVEV 99 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCSC------SSCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECCC------CCCccEEEECCCCCEeec
Confidence 5567788999999999888866554322112221110 012346999999997654
No 99
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=23.69 E-value=38 Score=26.33 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCcEEEEeCccccccCC
Q psy16867 27 DINKLKQFIEKYNKILVVTGAGISTESG 54 (275)
Q Consensus 27 ~l~~l~~~l~~a~~ivv~tGAGiS~~sG 54 (275)
.++++.+.|.+++.-|++.|.|-|...+
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a 64 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHIG 64 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHHH
Confidence 8999999999997567778999886543
No 100
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=23.62 E-value=34 Score=27.31 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred HHHHHH-HHHHHhCCcEEEEeCcccc
Q psy16867 26 SDINKL-KQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 26 ~~l~~l-~~~l~~a~~ivv~tGAGiS 50 (275)
..++++ +++|++|++-||++|. +.
T Consensus 22 ~~i~~a~a~lI~~AkRPvIl~Gg-v~ 46 (174)
T 1ytl_A 22 LEKGKPVANMIKKAKRPLLIVGP-DM 46 (174)
T ss_dssp CCCHHHHHHHHHHCSSEEEEECS-CC
T ss_pred ccHHHHHHHHHHcCCCCEEEECC-CC
Confidence 348898 9999999999999998 65
No 101
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=23.54 E-value=22 Score=28.25 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCeec
Q psy16867 199 FHVPQCPHCHGDLK 212 (275)
Q Consensus 199 ~~~P~Cp~Cgg~lr 212 (275)
+.++.||.|+|.++
T Consensus 76 Gal~~CP~C~G~l~ 89 (160)
T 2riq_A 76 GALLPCEECSGQLV 89 (160)
T ss_dssp CEECCCTTTCCCEE
T ss_pred CCCCCCCCCCCEEE
Confidence 45899999998654
No 102
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.25 E-value=54 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCccccccCC
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGISTESG 54 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS~~sG 54 (275)
.....++++++.|.++++| ++.|.|-|...+
T Consensus 22 l~~~~i~~~~~~i~~a~~I-~i~G~G~S~~~A 52 (186)
T 1m3s_A 22 ISNEEADQLADHILSSHQI-FTAGAGRSGLMA 52 (186)
T ss_dssp CCHHHHHHHHHHHHHCSCE-EEECSHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCeE-EEEecCHHHHHH
Confidence 4567899999999999864 467888885443
No 103
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=23.21 E-value=67 Score=31.19 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 25 ESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 25 ~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
...+++++++|++|++.+|++|.|+.
T Consensus 276 ~~~i~~a~~~L~~AkrPvIl~G~g~~ 301 (677)
T 1t9b_A 276 MQSINKAADLINLAKKPVLYVGAGIL 301 (677)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECGGGG
T ss_pred HHHHHHHHHHHHhCCCeEEEECcccc
Confidence 56799999999999999999999984
No 104
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=23.00 E-value=14 Score=29.67 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=30.4
Q ss_pred cEeEeCCCCCHh---HHHHHHHHhhhCCEEEEEccCccchHHhhhc
Q psy16867 214 DIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVPILVKEH 256 (275)
Q Consensus 214 ~vv~f~E~~~~~---~~~~~~~~~~~~dliLvlGts~~v~~~~r~~ 256 (275)
||+|-.-.+|-+ .++++...+.+.|++||||..-.|.+.+++.
T Consensus 80 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~d 125 (186)
T 2bru_C 80 NVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDD 125 (186)
T ss_dssp HHHHHHHTCCTTTEEESCCCHHHHHHCSEEEECBCGGGGCGGGTTS
T ss_pred eEEEEecCCCHHHHhhHHHHhcccccCCEEEEeccccccCccccCC
Confidence 455544444433 3456677888999999999999998777653
No 105
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=22.82 E-value=65 Score=29.91 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....++++++.|++|++.+|++|.|+.
T Consensus 185 ~~~~~i~~~~~~l~~a~rpvil~G~g~~ 212 (528)
T 1q6z_A 185 LNDQDLDILVKALNSASNPAIVLGPDVD 212 (528)
T ss_dssp CCHHHHHHHHHHHHHCSSCEEEECHHHH
T ss_pred CCHHHHHHHHHHHhcCCCeEEEECCccc
Confidence 4567899999999999999999999964
No 106
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.65 E-value=30 Score=25.08 Aligned_cols=13 Identities=62% Similarity=0.935 Sum_probs=11.2
Q ss_pred cEEEEeCcccccc
Q psy16867 40 KILVVTGAGISTE 52 (275)
Q Consensus 40 ~ivv~tGAGiS~~ 52 (275)
+|++.+|+|+|++
T Consensus 6 kIlvvC~~G~~TS 18 (109)
T 2l2q_A 6 NILLVCGAGMSTS 18 (109)
T ss_dssp EEEEESSSSCSSC
T ss_pred EEEEECCChHhHH
Confidence 4899999999875
No 107
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.58 E-value=41 Score=25.85 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEec--ccccceeeCCCCcccch
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 162 (275)
...+.-.|+.|..|.+.|.+..+-..+ ....|++. ..=+++.|..|++....
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~---------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEG---------GKSVFELSTQHHHDHLVCLDCGEVIEF 102 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGG---------GCEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC---------CceEEEecCCCceeEEEECCCCCEEEe
Confidence 556778899999999988776554322 12234431 12347899999997654
No 108
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=22.13 E-value=44 Score=31.40 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....++++++.|++|++.+|++|.|..
T Consensus 196 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (564)
T 2q28_A 196 PCPKSVTSAISLLAKAERPLIILGKGAA 223 (564)
T ss_dssp ECHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcccc
Confidence 4467899999999999999999999985
No 109
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=21.94 E-value=45 Score=32.46 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=26.7
Q ss_pred HHHhhhCCEEEEEccCccch---HHhhh---------ccCcEEEEecCCCCCCCC
Q psy16867 231 DHLVRSCDGVLVLGSSLTVP---ILVKE---------HAKGYLGKGNVQTTPFSF 273 (275)
Q Consensus 231 ~~~~~~~dliLvlGts~~v~---~~~r~---------~~~~~~v~iN~~~~~~~~ 273 (275)
.+.+.++|+||.||+.+.-. .+... .....+|.|+.++..++.
T Consensus 351 ~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~ 405 (677)
T 1t9b_A 351 NLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINK 405 (677)
T ss_dssp HHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSS
T ss_pred HHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCC
Confidence 34677899999999987531 11111 112238888888776543
No 110
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.90 E-value=34 Score=28.74 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHcCCc
Q psy16867 104 QPNANHYALKQMEDNEKL 121 (275)
Q Consensus 104 ~P~~~h~~L~~L~~~~~~ 121 (275)
+.+.+=..|.+|++.|-+
T Consensus 134 ~~~eae~lL~~lv~~gWl 151 (238)
T 3nw0_A 134 RKKEAEQVLQKFVQNKWL 151 (238)
T ss_dssp CHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHHhcch
Confidence 344667788888876554
No 111
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.42 E-value=59 Score=21.40 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=12.5
Q ss_pred ccccceeeCCCCcccc
Q psy16867 146 GTAFRVMCLGCDYEID 161 (275)
Q Consensus 146 G~~~~~~C~~C~~~~~ 161 (275)
|+.....|..|+..+.
T Consensus 1 ~s~~~~~C~~C~~~I~ 16 (73)
T 1wig_A 1 GSSGSSGCDSCEKYIT 16 (73)
T ss_dssp CCCSCCSCSSSCCCCS
T ss_pred CCcCcCCcccCCCEec
Confidence 5677788999998763
No 112
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.07 E-value=37 Score=22.89 Aligned_cols=15 Identities=33% Similarity=0.833 Sum_probs=12.0
Q ss_pred CCCCCCCCCCeeccc
Q psy16867 200 HVPQCPHCHGDLKPD 214 (275)
Q Consensus 200 ~~P~Cp~Cgg~lrP~ 214 (275)
.+-.||.|++.|+.+
T Consensus 7 ~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 7 DILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCBCTTTCCBEEEE
T ss_pred hheECCCCCCcCEEe
Confidence 367899999988744
No 113
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=20.64 E-value=43 Score=31.87 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEEeCcccccc-----------CCCCCccc
Q psy16867 24 EESDINKLKQFIEKYNKILVVTGAGISTE-----------SGIPDYRS 60 (275)
Q Consensus 24 ~~~~l~~l~~~l~~a~~ivv~tGAGiS~~-----------sGiP~fr~ 60 (275)
....+++++++|++|++.||++|.|.... .|+|.+..
T Consensus 229 ~~~~i~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~lae~~~~PV~~t 276 (604)
T 2x7j_A 229 DRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILAD 276 (604)
T ss_dssp CTGGGHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred ChhhHHHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHHHhcCceEEEc
Confidence 44679999999999999999999998432 37887654
No 114
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=20.59 E-value=1e+02 Score=27.05 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=26.2
Q ss_pred CCEEEEEccCccchHHhhhccCcEEEEecCCCC
Q psy16867 237 CDGVLVLGSSLTVPILVKEHAKGYLGKGNVQTT 269 (275)
Q Consensus 237 ~dliLvlGts~~v~~~~r~~~~~~~v~iN~~~~ 269 (275)
|+|.|-+|.|-+++.++-=..-..+|.||.+++
T Consensus 260 ~~lYiA~GISGAiQHlaGm~~s~~IVAIN~D~~ 292 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPG 292 (320)
T ss_dssp CSEEEEESCCCCHHHHHHHTTCSEEEEECSCTT
T ss_pred cceEEEEeccCcHHHHhhcccCCEEEEEeCCCC
Confidence 499999999999997744322368999999876
No 115
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.48 E-value=37 Score=18.77 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=10.8
Q ss_pred CCCCCCCCCeeccc
Q psy16867 201 VPQCPHCHGDLKPD 214 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~ 214 (275)
.++|+.|+..+-|.
T Consensus 3 ~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 3 NPNCARCGKIVYPT 16 (31)
T ss_dssp CCBCSSSCSBCCGG
T ss_pred CCcCCccCCEEecc
Confidence 36899999887654
No 116
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=20.44 E-value=69 Score=30.08 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy16867 23 VEESDINKLKQFIEKYNKILVVTGAGIS 50 (275)
Q Consensus 23 ~~~~~l~~l~~~l~~a~~ivv~tGAGiS 50 (275)
+....++++++.|++|++.+|++|.|..
T Consensus 189 ~~~~~v~~~~~~l~~a~rpvil~G~g~~ 216 (563)
T 2uz1_A 189 PDPADLDQALALLRKAERPVIVLGSEAS 216 (563)
T ss_dssp CCHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4567899999999999999999999985
No 117
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=20.34 E-value=1.1e+02 Score=20.75 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=10.8
Q ss_pred CCCCCCCCCeeccc
Q psy16867 201 VPQCPHCHGDLKPD 214 (275)
Q Consensus 201 ~P~Cp~Cgg~lrP~ 214 (275)
...||.|+..+...
T Consensus 48 ~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 48 SPTDPFNRQMLTES 61 (85)
T ss_dssp CSBCTTTCCBCCGG
T ss_pred CCCCCCCcCCCChH
Confidence 46899999887653
No 118
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.29 E-value=51 Score=19.03 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=12.3
Q ss_pred cccceeeCCCCcccchh
Q psy16867 147 TAFRVMCLGCDYEIDRH 163 (275)
Q Consensus 147 ~~~~~~C~~C~~~~~~~ 163 (275)
.-....|..|++.+...
T Consensus 9 ~~k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 9 TRKQVACEICGKIFRDV 25 (48)
T ss_dssp CCCSEEETTTTEEESSH
T ss_pred CCcCeeCCCCCcccCCH
Confidence 34457899999987544
No 119
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.18 E-value=1.1e+02 Score=22.60 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEecCcchhHhhhcCCceEEe--cccccceeeCCCCcccch
Q psy16867 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM--HGTAFRVMCLGCDYEIDR 162 (275)
Q Consensus 102 ~~~P~~~h~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 162 (275)
...+...|+.|..|.+.|.+..+-..|- ...|+. ++.=.++.|..|++....
T Consensus 42 ~is~~TVYR~L~~L~e~Glv~~~~~~~~---------~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 42 NIGLTTVYRTLQSMASSGLVDTLHTDTG---------ESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp CCCHHHHHHHHHHHHTTTSEEEEECTTS---------CEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCEEEEEeCCC---------ceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 5567788999999999887766544332 223443 123457899999997653
No 120
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=20.12 E-value=20 Score=26.96 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.2
Q ss_pred CCcEEEEeCccccccC
Q psy16867 38 YNKILVVTGAGISTES 53 (275)
Q Consensus 38 a~~ivv~tGAGiS~~s 53 (275)
-++|++.+|+|++++.
T Consensus 13 ~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 13 VRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCEEEECCSSSSHHHH
T ss_pred ccEEEEECCCcHHHHH
Confidence 4679999999999763
Done!