RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16867
(275 letters)
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2)
which includes human sirtuin SIRT4 and several bacterial
homologs; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 260
Score = 318 bits (818), Expect = e-110
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 2/219 (0%)
Query: 31 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYW 90
L+ F+ + ++LV+TGAGISTESGIPDYRSEG GLY+R+ RP+ Q+F++S R RYW
Sbjct: 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEG-GLYSRT-FRPMTHQEFMRSPAARQRYW 58
Query: 91 ARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFR 150
AR+FVGWPRFS+ QPNA H AL +E +L +ITQNVDGLH KAG++ V+E+HG+ R
Sbjct: 59 ARSFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHR 118
Query: 151 VMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGD 210
V+CL C + R + Q LE LNP ++ PDGDV++ +E ++ F VP+C C G
Sbjct: 119 VVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVDLEDEQVAGFRVPECERCGGV 178
Query: 211 LKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
LKPD+VFFG+N+PR R+ + D +LVLGSSL V
Sbjct: 179 LKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMV 217
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional.
Length = 285
Score = 263 bits (674), Expect = 3e-88
Identities = 101/225 (44%), Positives = 142/225 (63%), Gaps = 5/225 (2%)
Query: 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRV 85
+ ++ L+ F+E++ ++ V+TGAGIST+SGIPDYR + G + RS P+ +Q F+ S
Sbjct: 7 AALDALQDFVERHPRLFVLTGAGISTDSGIPDYR-DRNGQWKRS--PPITYQAFMGSDAA 63
Query: 86 RIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH 145
R RYWAR+ VGWP F QPNA H+AL ++ ++ ++TQNVDGLH +AG++ VIE+H
Sbjct: 64 RRRYWARSMVGWPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELH 123
Query: 146 GTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCP 205
G V C+GC R + Q +LE NP+ + PDGD ++ F VP CP
Sbjct: 124 GRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAPDGDADLEWAAFDHFRVPACP 183
Query: 206 HCHGDLKPDIVFFGDNIPRHRMEKI-DHLVRSCDGVLVLGSSLTV 249
C G LKPD+VFFG+N+PR R+ L + D VLV+GSSL V
Sbjct: 184 ACGGILKPDVVFFGENVPRERVAAARAALDAA-DAVLVVGSSLMV 227
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 225 bits (576), Expect = 3e-74
Identities = 86/216 (39%), Positives = 114/216 (52%), Gaps = 39/216 (18%)
Query: 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWP 98
+I+V+TGAGISTESGIPD+RS G GL+AR D + F R F G+
Sbjct: 1 KRIVVLTGAGISTESGIPDFRSPG-GLWARLDPEELAFS------PEAFRRDPELFWGFY 53
Query: 99 RFS----SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCL 154
R + QPN H AL ++E KL +ITQNVDGLH +AG+ KVIE+HG+ FRV C
Sbjct: 54 RERRYPLNAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCT 113
Query: 155 GCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPD 214
C E R + Q I + VP+CP C G L+PD
Sbjct: 114 KCGKEYPRDELQ---------------------------ADIDREEVPRCPKCGGLLRPD 146
Query: 215 IVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP 250
+VFFG+++P E + L + D +LV+G+SL V
Sbjct: 147 VVFFGESLPEELDEAAEALAK-ADLLLVIGTSLQVY 181
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 196 bits (500), Expect = 2e-62
Identities = 78/247 (31%), Positives = 113/247 (45%), Gaps = 62/247 (25%)
Query: 27 DINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSD-----------KRPVQ 75
I +L + ++K +I+V+TGAGIS ESGIPD+RS GL+ + P
Sbjct: 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSAN-GLWEEHRPEDVASPEGFARDPEL 60
Query: 76 FQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYK 135
F RR ++ +PNA H AL ++E KL +ITQN+DGLH +
Sbjct: 61 VWKFYNERRRQLL-------------DAKPNAAHRALAELEKLGKLVTVITQNIDGLHER 107
Query: 136 AGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEET 195
AG+K VIE+HG+ R C C D E L P+
Sbjct: 108 AGSKNVIELHGSLLRARCTKCGQTYDLD------EYLKPEP------------------- 142
Query: 196 ISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------ 249
P+CP C G L+PD+V FG+ +P +++ + D +V+G+SL V
Sbjct: 143 ------PRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGL 196
Query: 250 PILVKEH 256
P +EH
Sbjct: 197 PYEAREH 203
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer. Also included in this
superfamily is a group of uncharacterized Sir2-like
proteins which lack certain key catalytic residues and
conserved zinc binding cysteines.
Length = 222
Score = 194 bits (495), Expect = 5e-62
Identities = 75/219 (34%), Positives = 106/219 (48%), Gaps = 43/219 (19%)
Query: 39 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWP 98
+++V TGAGISTESGIPD+R G GL+ R D + F R F +
Sbjct: 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFS------PEAFRRDPELFWLFY 54
Query: 99 RFS-----SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNK--KVIEMHGTAFRV 151
+ +PN H AL ++E KL IITQNVDGLH +AG++ +VIE+HG+ RV
Sbjct: 55 KERRYTPLDAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRV 114
Query: 152 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 211
C C E R + + + P+CP C G L
Sbjct: 115 RCTSCGKEYPRDEVLE------------------------------REKPPRCPKCGGLL 144
Query: 212 KPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP 250
+PD+V FG+ +P+ ++ + D VLV+G+SLTV
Sbjct: 145 RPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVY 183
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 188 bits (479), Expect = 3e-60
Identities = 74/208 (35%), Positives = 104/208 (50%), Gaps = 37/208 (17%)
Query: 46 GAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRY----WARNFVGWPRFS 101
GAGISTESGIPD+RS+ GLYA+ K + + S + AR + P
Sbjct: 1 GAGISTESGIPDFRSDD-GLYAKLAKEELASPEAFFSNPYLVWDPFYNIARELLPGP--- 56
Query: 102 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEID 161
QPN HY + ++ED KL +ITQN+DGLH +AG+KKV+E+HG+ + C+ C +
Sbjct: 57 -AQPNPAHYFIAELEDKGKLLRLITQNIDGLHERAGSKKVVELHGSFAKARCVSCHKKYT 115
Query: 162 RHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDN 221
+ + D VP+C C G LKPDIVFFG+N
Sbjct: 116 G------------------ETLPERIDAAK---------VPKCDKCGGLLKPDIVFFGEN 148
Query: 222 IPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
+P + V D ++V+G+SL V
Sbjct: 149 LPDK-FFRAYEDVEEADLLIVIGTSLKV 175
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 163 bits (416), Expect = 1e-49
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 58/239 (24%)
Query: 27 DINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYA--------------RSDKR 72
+ ++ Q +++ +I+V+TGAGIS ESGIPD+RS+ GL++ R D
Sbjct: 1 PLEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKD-GLWSDKYDPEDLASPSGFRRD-- 57
Query: 73 PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGL 132
P DF R QPN HYAL ++ED KL IITQN+DGL
Sbjct: 58 PELVWDFYSERL-------------RLLYLAQPNKAHYALAELEDKGKLLRIITQNIDGL 104
Query: 133 HYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMS 192
H +AG+K VIE+HG+ RV C C + + +I+ E
Sbjct: 105 HERAGSKNVIELHGSLKRVRCSKCGNQYYD------------EDVIKFIE---------- 142
Query: 193 EETISKFHVPQCPHCHGD-LKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP 250
+P+CP C G L+PD+V+FG+ +P +++ ++ D ++V+G+SL V
Sbjct: 143 -----DGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVY 196
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 152 bits (385), Expect = 2e-45
Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 35 IEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFL-KSRRVRIRYWARN 93
+ K K +V+TGAGISTESGIPD+RS GL+ + D V D+ ++ R++
Sbjct: 1 LTKSRKTVVLTGAGISTESGIPDFRSPD-GLWKKYDPEEVASIDYFYRNPEEFWRFYKEI 59
Query: 94 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMC 153
+G QPN HY L ++E + IITQN+DGLH +AG+K VIE+HGT C
Sbjct: 60 ILG---LLEAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYC 116
Query: 154 LGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKP 213
+ C + D LE++ E VP+CP C G ++P
Sbjct: 117 VNCGSKYD-------LEEV---------------KYAKKHE------VPRCPKCGGIIRP 148
Query: 214 DIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------PILVKEHAKGYLGKGNVQ 267
D+V FG+ +P+ + + + D +VLGSSL V P++ KE L N
Sbjct: 149 DVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKE-NGAKLVIVNAD 207
Query: 268 TTPFSFL 274
TPF ++
Sbjct: 208 ETPFDYI 214
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 143 bits (362), Expect = 6e-42
Identities = 70/221 (31%), Positives = 102/221 (46%), Gaps = 56/221 (25%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYARSD-----------KRPVQFQDFLKSRRVRIR 88
+++V+TGAGIS ESGIP +R GL+AR D + P +F RR +
Sbjct: 2 RVVVLTGAGISAESGIPTFRDAD-GLWARFDPEELATPEAFARDPELVWEFYNWRRRKA- 59
Query: 89 YWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTA 148
QPN H AL ++E +ITQNVDGLH +AG++ VIE+HG+
Sbjct: 60 ------------LRAQPNPAHLALAELERRLPNVLLITQNVDGLHERAGSRNVIELHGSL 107
Query: 149 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCH 208
FRV C C Y + E I + +P+CP C
Sbjct: 108 FRVRCSSCGYVGEN------------------------------NEEIPEEELPRCPKCG 137
Query: 209 GDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
G L+P +V+FG+++P + + + D LV+G+S V
Sbjct: 138 GLLRPGVVWFGESLP-LALLEAVEALAKADLFLVIGTSGVV 177
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes
human sirtuins SIRT1-3 and yeast Hst1-4; and are members
of the SIR2 family of proteins, silent information
regulator 2 (Sir2) enzymes which catalyze NAD+-dependent
protein/histone deacetylation. Sir2 proteins have been
shown to regulate gene silencing, DNA repair, and life
span. The most-studied function, gene silencing,
involves the inactivation of chromosome domains
containing key regulatory genes by packaging them into a
specialized chromatin structure that is inaccessible to
DNA-binding proteins. The nuclear SIRT1 has been shown
to target the p53 tumor suppressor protein for
deacetylation to suppress DNA damage, and the
cytoplasmic SIRT2 homolog has been shown to target
alpha-tubulin for deacetylation for the maintenance of
cell integrity.
Length = 235
Score = 130 bits (328), Expect = 1e-36
Identities = 74/224 (33%), Positives = 104/224 (46%), Gaps = 51/224 (22%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYAR--SDKRPVQFQDFLKSRRVRIRYWARNFVGW 97
KI+V+ GAGIST +GIPD+RS G GLYA P F I Y+ +N
Sbjct: 2 KIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMF------DISYFRKN---- 51
Query: 98 PR-FSS---------FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMH 145
PR F + F+P+ HY +K +ED L TQN+D L AG + ++IE H
Sbjct: 52 PRPFYALAKELYPGQFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAH 111
Query: 146 GTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCP 205
G+ C+ C ++ MR E I VP+CP
Sbjct: 112 GSFATAHCIKCKHKYP------------------GDWMR---------EDIFNQEVPKCP 144
Query: 206 HCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
C G +KPDIVFFG+++P ++ D ++V+G+SL V
Sbjct: 145 RCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKV 188
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 129 bits (326), Expect = 1e-36
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 43/223 (19%)
Query: 31 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQF--QDFLKSRRVR- 86
L+ ++ +I+ TGAG+ST SGIPDYRS+ GLY K P DFL+ +
Sbjct: 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKN-GLYNEIYKYSPEYLLSHDFLEREPEKF 59
Query: 87 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 146
++ N F +PN H + ++E L +ITQN+DGLH KAG+K V+E HG
Sbjct: 60 YQFVKENLY----FPDAKPNIIHQKMAELE-KMGLKAVITQNIDGLHQKAGSKNVVEFHG 114
Query: 147 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 206
+ +R+ C C K E L P
Sbjct: 115 SLYRIYCTVC------GKTVDWEEYLK---------------------------SPYHAK 141
Query: 207 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
C G ++PDIV + + + +E+ + D ++++G+S V
Sbjct: 142 CGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVV 184
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 128 bits (323), Expect = 5e-36
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 38/224 (16%)
Query: 31 LKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRI 87
+K+F+E N+ + +TGAGIST SGIPD+R G+Y + + DF S
Sbjct: 1 MKEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQ-GIYKKYPQNVFDI-DFFYSHPEEF 58
Query: 88 RYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGT 147
+A+ + +P + +PN H L ++E+ + +ITQN+D LH KAG+KKVIE+HG
Sbjct: 59 YRFAKEGI-FPMLEA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGN 116
Query: 148 AFRVMCLGC--DYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCP 205
C+ C Y ++ D++ E + K VP+C
Sbjct: 117 VEEYYCVRCGKRYTVE-------------DVI----------------EKLEKSDVPRCD 147
Query: 206 HCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
C G ++P+IVFFG+ +P+ + + L ++V+GSSL V
Sbjct: 148 DCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVV 191
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 124 bits (314), Expect = 4e-35
Identities = 72/243 (29%), Positives = 96/243 (39%), Gaps = 60/243 (24%)
Query: 39 NKILVVTGAGISTESGIPDYRS-EGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGW 97
++V TGAGIST +GIPD+R GV DK R W
Sbjct: 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKG------------RRRFSW------- 41
Query: 98 PRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLG 155
RF +P H AL ++E L ++I+QNVDGLH ++G +K+ E+HG F +C
Sbjct: 42 -RFRRAEPTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKS 100
Query: 156 C--DYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKP 213
C +Y D + GD E +C C G LK
Sbjct: 101 CGPEYVRDD-------------------VVETRGDKETG---------RRCHACGGILKD 132
Query: 214 DIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV------PILVKEHAKGYLGKGNVQ 267
IV FG+ +P D L LG+SL V P+ G L N+Q
Sbjct: 133 TIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAG-GRLVIVNLQ 191
Query: 268 TTP 270
TP
Sbjct: 192 PTP 194
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 108 bits (270), Expect = 5e-28
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 33/222 (14%)
Query: 31 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPV-QFQDFLKSRRVRIRY 89
L I K ++ +TG+G S ES IP +R ++++ D + F K +I
Sbjct: 21 LADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPE-KIWE 79
Query: 90 WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAF 149
R+ + N H AL +E L +++TQNVDGLH ++GN KVI +HG+ F
Sbjct: 80 VIRDIS---SDYEIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVF 136
Query: 150 RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFH--VPQCPHC 207
C C I + KI M ++T H P+CP C
Sbjct: 137 EARCCTCRKTI---QLNKI----------------------MLQKTSHFMHQLPPECP-C 170
Query: 208 HGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
G KP+++ FG+ IP+ +++ + + CD +LV+G+S +V
Sbjct: 171 GGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSV 212
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 102 bits (256), Expect = 3e-26
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 46/223 (20%)
Query: 35 IEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQD-FLKSRRVRIRYW--- 90
++ I ++TGAGIS ESGI +R GL+ V D FL++ + R++
Sbjct: 1 MKACRCITILTGAGISAESGISTFRDGN-GLWENHRVEDVATPDAFLRNPALVQRFYNER 59
Query: 91 ARNFVGWPRFSSFQPNANHYALKQMEDNEKLSY--IITQNVDGLHYKAGNKKVIEMHGTA 148
R + SS +PN H+AL ++E + ++TQNVD LH +AG+ V+ MHG
Sbjct: 60 RRALL----SSSVKPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGEL 115
Query: 149 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCH 208
+V C H F + E G +C C
Sbjct: 116 LKVRCTA-----TGHVF-------------DWTEDVVHG-------------SSRCKCCG 144
Query: 209 --GDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
G L+P IV+FG+ +P + M++I+ ++ D + +G+S V
Sbjct: 145 CVGTLRPHIVWFGE-MPLY-MDEIESVMSKTDLFVAVGTSGNV 185
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 103 bits (258), Expect = 1e-25
Identities = 74/237 (31%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 23 VEESDINKLKQFIEKYN--KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQ----- 75
V E L ++IE+ N KILV+ GAGIS +GIPD+RS G+YA+ K +
Sbjct: 12 VGEPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDA 71
Query: 76 FQDFLKSRRVRIRY-WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHY 134
F L + + Y AR WP FQP A H+ ++ + D +L TQN+DGL
Sbjct: 72 FSLTLLREKPEVFYSIAREMDLWP--GHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLER 129
Query: 135 KAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMS 192
AG ++E HG+ C+ C + D+E +
Sbjct: 130 AAGVPPSLLVEAHGSFSAASCIEC-----HTPY----------------------DIEQA 162
Query: 193 EETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
VP C C G +KPD+VFFG+N+P + H + + +L++G+SL V
Sbjct: 163 YLEARSGKVPHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQV 218
>gnl|CDD|223390 COG0313, COG0313, Predicted methyltransferases [General function
prediction only].
Length = 275
Score = 30.6 bits (70), Expect = 0.70
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 16 FIPKHKPVEESDINKLKQFIEKYNKILVVTGAG 48
I H+ E+ + KL ++K + +V+ AG
Sbjct: 55 LISYHEHNEKEKLPKLIPLLKKGKSVALVSDAG 87
>gnl|CDD|225724 COG3183, COG3183, Predicted restriction endonuclease [Defense
mechanisms].
Length = 272
Score = 29.8 bits (67), Expect = 1.2
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 140 KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKF 199
I +HGT C C++ FQK ++ IE P + E
Sbjct: 189 AAIAIHGTV----CDVCEF-----DFQKKYGEIGKGY-IEVHHKIPIAEFEGEYHVNPLT 238
Query: 200 H-VPQCPHCHG 209
P CP+CH
Sbjct: 239 DLAPLCPNCHK 249
>gnl|CDD|238697 cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized
Sir2-like proteins which lack certain key catalytic
residues and conserved zinc binding cysteines; and are
members of the SIR2 superfamily of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation.
Length = 242
Score = 29.7 bits (67), Expect = 1.3
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 46 GAGISTESGIPDYRS-------------EGVGLYARSDKRPVQFQDFLKSRRVRIRYWAR 92
GAG+S SG+PD+++ +G + A+ + ++ + L+ I
Sbjct: 8 GAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIG-IKI 66
Query: 93 NFVGWPRFS-SFQPNANHYAL-KQMEDNEKLSYIITQNVDGL---HYKAGNKKV 141
N V + F+P+ H L + +NE IIT N D L K NK V
Sbjct: 67 NAVLEEKTRPDFEPSPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVV 120
>gnl|CDD|183485 PRK12380, PRK12380, hydrogenase nickel incorporation protein HybF;
Provisional.
Length = 113
Score = 28.8 bits (64), Expect = 1.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 200 HVPQCPHCHGD 210
H QCPHCHG+
Sbjct: 85 HDAQCPHCHGE 95
>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional.
Length = 235
Score = 29.8 bits (68), Expect = 1.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 163 HKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKF 199
HK +K LE + ++ EM P VE+S E + +F
Sbjct: 178 HKVKKALEAAGIEFLVAELEMIPQNPVELSGEDLEQF 214
>gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional.
Length = 600
Score = 29.7 bits (67), Expect = 1.7
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 106 NANHYALKQMEDNEKLSYIIT---------QNVDGLHYKAGNKKVIEMHGTAFRVMCLG- 155
NA Y KQ+ EKL ++T + LH +KK ++ TAF V LG
Sbjct: 97 NAGDYKFKQI-AQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFGLGD 155
Query: 156 CDYEIDRHKFQKILEDLNPDLM-IESQEM--RPDGDVEMSEE 194
YE F + +D + L + ++ + R D DVE
Sbjct: 156 TSYE----FFCQAGKDFDSKLAELGAERLLDRVDADVEYQAA 193
>gnl|CDD|182745 PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.
Length = 263
Score = 29.0 bits (65), Expect = 2.6
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 20/78 (25%)
Query: 45 TGAGISTESGIPDYRSEGVGLY---ARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFS 101
GA + + DY + + L +R D V FQ+F+K +P S
Sbjct: 133 AGAPVQSGDANTDY-NAAIALVQDKSRQDDAIVAFQNFVKK--------------YPD-S 176
Query: 102 SFQPNANHYALKQMEDNE 119
++QPNAN Y L Q+ N+
Sbjct: 177 TYQPNAN-YWLGQLNYNK 193
>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily;
ERdj5, also known as JPDI and macrothioredoxin, is a
protein containing an N-terminal DnaJ domain and four
redox active TRX domains. This subfamily is comprised of
the first TRX domain of ERdj5 located after the DnaJ
domain at the N-terminal half of the protein. ERdj5 is a
ubiquitous protein localized in the endoplasmic
reticulum (ER) and is abundant in secretory cells. It's
transcription is induced during ER stress. It interacts
with BiP through its DnaJ domain in an ATP-dependent
manner. BiP, an ER-resident member of the Hsp70
chaperone family, functions in ER-associated degradation
and protein translocation.
Length = 101
Score = 27.5 bits (61), Expect = 2.8
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 186 DGDVEMSEETISKFHVPQCPHCHGDLKP 213
D V E F+ P+C HCH DL P
Sbjct: 12 DAAVNSGEIWFVNFYSPRCSHCH-DLAP 38
>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
Provisional.
Length = 420
Score = 28.5 bits (65), Expect = 3.6
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 14 ISFIPKHKPVEESDINKLKQFIEKYNKI-LVVTG------AGIS---TESGIP 56
+ + ++ ++ +DI L F ++ I L V G AGI +G+P
Sbjct: 37 TALLAENVVIDVTDIEALVAFAKE-EGIDLTVVGPEAPLVAGIVDAFRAAGLP 88
>gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in
SKI-1-like proteins. SKI-1 (type I membrane-bound
subtilisin-kexin-isoenzyme) proteins are secretory
Ca2+-dependent serine proteinases cleave at nonbasic
residues: Thr, Leu, and Lys. SKI-1s play a critical
role in the regulation of the synthesis and metabolism
of cholesterol and fatty acid metabolism. Members of
the peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 255
Score = 28.2 bits (63), Expect = 4.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 205 PHCHGDLKPDIVFFGDNI 222
P +G +KPDIV +G +
Sbjct: 180 PGGYGRVKPDIVTYGSGV 197
>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family.
This enzyme catalyzes the conversion of D-ribulose
5-phosphate into D-xylulose 5-phosphate.
Length = 201
Score = 27.7 bits (62), Expect = 5.9
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 176 LMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL--------KPDIVFFGDNIPRHRM 227
LM+E + E + IS FH H H + K +V N P +
Sbjct: 64 LMVEEPDRIIPDFAEAGADIIS-FHAEASDHPHRTIQLIKEAGAKAGLVL---N-PATPL 118
Query: 228 EKIDHLVRSCDGVLVL 243
+ I++L+ D VL++
Sbjct: 119 DAIEYLLDDLDLVLLM 134
>gnl|CDD|149635 pfam08646, Rep_fac-A_C, Replication factor-A C terminal domain.
This domain is found at the C terminal of replication
factor A. Replication factor A (RPA) binds
single-stranded DNA and is involved in replication,
repair, and recombination of DNA.
Length = 146
Score = 27.2 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 138 NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKIL 169
NKKV E +R C CD E K++ IL
Sbjct: 27 NKKVTEQGDGTWR--CEKCDKEFPEPKYRYIL 56
>gnl|CDD|188261 TIGR02949, anti_SigH_actin, anti-sigma factor, TIGR02949 family.
This group of anti-sigma factors are associated in an
apparent operon with a family of sigma-70 family sigma
factors (TIGR02947). They and appear by homology, tree
building, bidirectional best hits and one-to-a-genome
distribution, to represent a conserved family. This
family is restricted to the Actinobacteria
[Transcription, Transcription factors].
Length = 84
Score = 26.3 bits (58), Expect = 6.2
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 188 DVEMSEETISKF--HVPQCPHC 207
D E +E+ + H+ CP C
Sbjct: 21 DGECTEDDAERLRRHLAACPEC 42
>gnl|CDD|128971 smart00732, YqgFc, Likely ribonuclease with RNase H fold. YqgF
proteins are likely to function as an alternative to
RuvC in most bacteria, and could be the principal
holliday junction resolvases in low-GC Gram-positive
bacteria. In Spt6p orthologues, the catalytic residues
are substituted indicating that they lack enzymatic
functions.
Length = 99
Score = 26.4 bits (59), Expect = 6.4
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 17 IPKHKPVEESDINKLKQFIEKYNKILVVTGA 47
+ E D +LK+ I+KY L+V G
Sbjct: 30 VIPRTNKEA-DAARLKKLIKKYQPDLIVIGL 59
>gnl|CDD|233589 TIGR01828, pyru_phos_dikin, pyruvate, phosphate dikinase. This
model represents pyruvate,phosphate dikinase, also
called pyruvate,orthophosphate dikinase. It is similar
in sequence to other PEP-utilizing enzymes [Energy
metabolism, Other].
Length = 856
Score = 28.1 bits (63), Expect = 7.2
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 33/128 (25%)
Query: 127 QNVDGLHYKAGNK--------KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMI 178
+ V+GL GN + I+M G I F++ILE + + +
Sbjct: 113 ETVEGLAKLTGNARFAYDSYRRFIQMFGDVV--------LGIPHELFEQILEAMKEEKGV 164
Query: 179 ESQEMRPDGDVEMSEETISKFH----------VPQCPHCHGDLKPDIVFFGDNIPR---- 224
++ D + +E I K+ PQ P +L VF N PR
Sbjct: 165 ---KLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVY 221
Query: 225 HRMEKIDH 232
R+ I
Sbjct: 222 RRLNDIPE 229
>gnl|CDD|107262 cd06267, PBP1_LacI_sugar_binding_like, Ligand binding domain of the
LacI tanscriptional regulator family belonging to the
type I periplasmic-binding fold protein superfamily.
Ligand binding domain of the LacI tanscriptional
regulator family belonging to the type I
periplasmic-binding fold protein superfamily. In most
cases, ligands are monosaccharide including lactose,
ribose, fructose, xylose, arabinose, galactose/glucose,
and other sugars. The LacI family of proteins consists
of transcriptional regulators related to the lac
repressor. In this case, the domain sugar binding
changes the DNA binding activity of the repressor
domain.
Length = 264
Score = 27.6 bits (62), Expect = 7.5
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 215 IVFFGDNIPRHRMEKIDHLV-RSCDGVLVLGSSLTVPILVKEHAKG 259
++ D P E ++ L+ R DG+++ S L +L + A G
Sbjct: 33 LLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDELLEELAALG 78
>gnl|CDD|216150 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase.
Members of this family are involved in modifying bases
in RNA molecules. They carry out the conversion of
uracil bases to pseudouridine. This family includes
RluD, a pseudouridylate synthase that converts specific
uracils to pseudouridine in 23S rRNA. RluA from E. coli
converts bases in both rRNA and tRNA.
Length = 149
Score = 27.0 bits (60), Expect = 7.8
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 57 DYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWA 91
D + G+ L A+ + + R+V Y A
Sbjct: 44 DRNTSGLLLLAKDGEAANKLNKLFPERKVEKEYLA 78
>gnl|CDD|226340 COG3819, COG3819, Predicted membrane protein [Function unknown].
Length = 229
Score = 27.4 bits (61), Expect = 7.9
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 34 FIEKYNKILVVTGAGIST--ESGIP 56
FI K+N ILVV AGI T SG+
Sbjct: 16 FILKFNPILVVVVAGIVTGLVSGMS 40
>gnl|CDD|188398 TIGR03882, cyclo_dehyd_2, bacteriocin biosynthesis cyclodehydratase
domain. This model describes a ThiF-like domain of a
fusion protein found in clusters associated with the
production of TOMMs (thiazole/oxazole-modified
microcins), small bacteriocins with characteristic
heterocycle modifications. This domain is presumed to
act as a cyclodehydratase, as do members of the SagC
family modeled by TIGR03603.
Length = 164
Score = 26.9 bits (60), Expect = 8.1
Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 202 PQCPHCHGDLKPD 214
PQCP C GDL D
Sbjct: 110 PQCPVC-GDLPED 121
>gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
Length = 323
Score = 27.6 bits (62), Expect = 8.7
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 28 INKLKQFIEKYNKILVVTGAGI 49
+ +L + +++ + L+VT +
Sbjct: 11 LEELGEELKRLGRALIVTDPSL 32
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 27.3 bits (61), Expect = 9.5
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 18 PKHKPVEESD-----INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGV 63
P H+ EE D I L++ ++KY+ +L+ TG S + GIP GV
Sbjct: 96 PLHE--EEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGV 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.422
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,269,168
Number of extensions: 1365183
Number of successful extensions: 1757
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1724
Number of HSP's successfully gapped: 60
Length of query: 275
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 179
Effective length of database: 6,679,618
Effective search space: 1195651622
Effective search space used: 1195651622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)