RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16867
(275 letters)
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 180 bits (456), Expect = 2e-56
Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 15/229 (6%)
Query: 26 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRV 85
S + ++F K I++++GAG+S ESG+P +R G G + + L
Sbjct: 3 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAG-GYWRKWQ--AQDLATPLAFAHN 59
Query: 86 RIRYWARNFVGWPRFSSFQPNANHYALKQME----DNEKLSYIITQNVDGLHYKAGNKKV 141
R W S +PNA H A+ + E + +ITQN+D LH KAG K +
Sbjct: 60 PSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNL 119
Query: 142 IEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHV 201
+E+HG+ F+ C C + +K +P S + P+ + + + K
Sbjct: 120 LEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDASIPVEKLPR 171
Query: 202 PQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP 250
+ C G L+P +V+FG+N+ +E++D + CD LV+G+S V
Sbjct: 172 CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVY 220
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 155 bits (393), Expect = 2e-46
Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 31/238 (13%)
Query: 18 PKHKPVEESDINKLKQFI--EKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQ 75
K + ++E + + +++ E+ +++ + GAGIST +GIPD+RS GLY +K +
Sbjct: 21 QKERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLP 80
Query: 76 FQDFLKSRRVRIRYWARNFVGWPRF--SSFQPNANHYALKQMEDNEKLSYIITQNVDGLH 133
+ + + ++ F F+P HY ++ ++D L TQN+D L
Sbjct: 81 YPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLE 140
Query: 134 YKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEM 191
AG + ++E HGT + C+ R + +
Sbjct: 141 RIAGLEQEDLVEAHGTFYTSHCVSAS-------------------------CRHEYPLSW 175
Query: 192 SEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 249
+E I P+C C +KPDIVFFG+++P + D +LV+G+SL V
Sbjct: 176 MKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQV 233
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 142 bits (359), Expect = 4e-42
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 30/227 (13%)
Query: 25 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRR 84
E +I K + + K +V TGAGIS ESGIP +R E GL+ + D V K
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGED-GLWRKYDPEEVASISGFKRNP 60
Query: 85 VRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM 144
R + + +PN HYA+ ++E + +ITQN+D LH +AG+++V+E+
Sbjct: 61 ---RAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLEL 117
Query: 145 HGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQC 204
HG+ ++ CL C D +F +
Sbjct: 118 HGSMDKLDCLDCHETYDWSEFVEDFNKGEIP--------------------------RCR 151
Query: 205 PHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI 251
+KP +V FG+ +P+ + + + CD +V+GSSL V
Sbjct: 152 KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYP 198
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 141 bits (357), Expect = 7e-42
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 34/212 (16%)
Query: 40 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPR 99
++LV+TGAGIS ESGI +R+ GL+ V + ++ + +
Sbjct: 3 RVLVLTGAGISAESGIRTFRAAD-GLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQ 61
Query: 100 FSSFQPNANHYALKQMEDN-EKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDY 158
QPNA H AL +++D ++TQN+D LH +AGN VI MHG +V C
Sbjct: 62 QPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ 121
Query: 159 EIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFF 218
+D ++ C L+P +V+F
Sbjct: 122 VLDWTGD------------------------------VTPEDKCHCCQFPAPLRPHVVWF 151
Query: 219 GDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVP 250
G+ +I + D + +G+S V
Sbjct: 152 GEMPLGMD--EIYMALSMADIFIAIGTSGHVY 181
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 137 bits (346), Expect = 4e-40
Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 33/222 (14%)
Query: 30 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRY 89
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + + + +
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 90 WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAF 149
W + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG+
Sbjct: 61 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLR 120
Query: 150 RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHG 209
V C C+ + KI +P+C C
Sbjct: 121 VVRCTSCNNSFEVESAPKI------------------------------PPLPKCDKCGS 150
Query: 210 DLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI 251
L+P +V+ G+ +P +++ V D ++V G+S V
Sbjct: 151 LLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQP 192
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 134 bits (339), Expect = 4e-39
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 31/224 (13%)
Query: 28 INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRI 87
+ + + + + +TGAGIST SGIPD+R G+Y + + F
Sbjct: 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 88 RYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGT 147
R+ +PN H L ++E+ + +ITQN+D LH +AG+KKVIE+HG
Sbjct: 62 RFAKEG---IFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGN 118
Query: 148 AFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHC 207
C+ C+ + K LE VP C C
Sbjct: 119 VEEYYCVRCEKKYTVEDVIKKLES---------------------------SDVPLCDDC 151
Query: 208 HGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVPI 251
+ ++P+IVFFG+N+P+ + + L ++VLGSSL V
Sbjct: 152 NSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYP 195
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 132 bits (332), Expect = 1e-37
Identities = 61/246 (24%), Positives = 96/246 (39%), Gaps = 43/246 (17%)
Query: 24 EESDINKLKQFIE--KYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK 81
E + K+ ++ K++ + GAGIST GIPD+RS G GLY + + + + +
Sbjct: 4 TEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVF 63
Query: 82 SRRV--RIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNK 139
+F+P+ HY LK +D + L + TQN+D L +AG K
Sbjct: 64 DVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVK 123
Query: 140 --KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETIS 197
+IE HG+ C+GC F+ L +
Sbjct: 124 DDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAE------------------------HP 159
Query: 198 KFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDH-------------LVRSCDGVLVLG 244
+C C +KP IVFFG+++P E + V+V+G
Sbjct: 160 IKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVG 219
Query: 245 SSLTVP 250
+SL V
Sbjct: 220 TSLAVY 225
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 28.7 bits (63), Expect = 0.67
Identities = 18/150 (12%), Positives = 39/150 (26%), Gaps = 13/150 (8%)
Query: 117 DNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDL 176
D++K +Y + ++ Y + K E G ++D+ + ++D D
Sbjct: 5 DDQKSAYALGASLG--RYMENSLKEQEKLGI-----------KLDKDQLIAGVQDAFADK 51
Query: 177 MIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRS 236
S + S + + ++ +
Sbjct: 52 SKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVY 111
Query: 237 CDGVLVLGSSLTVPILVKEHAKGYLGKGNV 266
G + V + KG L G
Sbjct: 112 QVVEAGKGEAPKDSDTVVVNYKGTLIDGKE 141
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD
{Escherichia coli [TaxId: 562]}
Length = 390
Score = 28.1 bits (61), Expect = 1.3
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 28 INKLKQFIEKYNKILVVTGAGISTESGIPD 57
I L++ I ++L+ G G ++G+ D
Sbjct: 22 IAGLREQIPHDARVLITYGGGSVKKTGVLD 51
>d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus
[TaxId: 63363]}
Length = 151
Score = 26.2 bits (58), Expect = 3.2
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 95 VGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHY------KAGNKKVIEMHGTA 148
G+ + + L E E L + L Y + + I +
Sbjct: 7 KGFDKLDHYFRTELDIDLTD-ETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALAD-- 63
Query: 149 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKF 199
+ + E FQKI +D+ D ++E P ++ + E+ S++
Sbjct: 64 ---LNITKALEEHIKNFQKIEQDMGVDELLEYIAFIPPVEMNVGEDLKSEY 111
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal
domain {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 191
Score = 26.3 bits (57), Expect = 3.6
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 5/122 (4%)
Query: 105 PNANHYALKQME---DNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEID 161
+K + + K D + ++ L
Sbjct: 22 EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA 81
Query: 162 RHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDN 221
++E ++ + + PD ++M E ++KF+ HGDL V +
Sbjct: 82 WEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY--HRGIVHGDLSQYNVLVSEE 139
Query: 222 IP 223
Sbjct: 140 GI 141
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus
thermophilus [TaxId: 274]}
Length = 148
Score = 25.8 bits (57), Expect = 4.3
Identities = 11/90 (12%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 116 EDNEKLSYIITQNVDGLHY------KAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKIL 169
D +++S + + L K + +I + + + +F+++
Sbjct: 23 NDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPD-----LPIAKGLQETLQEFRRMD 77
Query: 170 EDLNPDLMIESQEMRPDGDVEMSEETISKF 199
L ++++ P D+E++E+ +
Sbjct: 78 TALELKPVLDALAALPPLDLEVAEDVRNLL 107
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.1 bits (54), Expect = 6.4
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 166 QKILEDLNPDLMIESQEMRPDG----DVEMSEETISKFHVPQCPHCHGDLKP 213
+ I + +E+ E G +E + ++ V +C C L
Sbjct: 9 EIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGM 60
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 24.1 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 191 MSEETISKFHVPQCPHCH 208
MS+ I F P CPHC
Sbjct: 1 MSKVKIELFTSPMCPHCP 18
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.422
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,084,003
Number of extensions: 53181
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 28
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)