BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16868
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97690|SMC3_RAT Structural maintenance of chromosomes protein 3 OS=Rattus
norvegicus GN=Smc3 PE=1 SV=1
Length = 1191
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIKQVII GF+SY++QT+V+PF +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR +
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90
>sp|Q5R4K5|SMC3_PONAB Structural maintenance of chromosomes protein 3 OS=Pongo abelii
GN=SMC3 PE=2 SV=1
Length = 1217
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIKQVII GF+SY++QT+V+PF +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR +
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90
>sp|Q9CW03|SMC3_MOUSE Structural maintenance of chromosomes protein 3 OS=Mus musculus
GN=Smc3 PE=1 SV=2
Length = 1217
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIKQVII GF+SY++QT+V+PF +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR +
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90
>sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens
GN=SMC3 PE=1 SV=2
Length = 1217
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIKQVII GF+SY++QT+V+PF +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR +
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90
>sp|O97594|SMC3_BOVIN Structural maintenance of chromosomes protein 3 OS=Bos taurus
GN=SMC3 PE=1 SV=1
Length = 1218
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIKQVII GF+SY++QT+V+PF +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR +
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90
>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
GN=smc3 PE=1 SV=2
Length = 1209
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIKQVII GF+SY++QT+V+PF +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR +
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90
>sp|Q00737|SUDA_EMENI Chromosome segregation protein sudA OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=sudA PE=2 SV=3
Length = 1215
Score = 135 bits (339), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/91 (69%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MY+KQ+II GFKSYK+QTV+EPF +HNV+VGRNGSGKSNFF AI+FVLSD T L +
Sbjct: 1 MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGR-E 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
RQALLHEG+G V++AYVEI+FDN+D R P
Sbjct: 60 ERQALLHEGSGSAVMSAYVEIIFDNSDERFP 90
>sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3 OS=Arabidopsis
thaliana GN=SMC3 PE=2 SV=1
Length = 1204
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/91 (67%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M+IKQVII GFKSYKEQ E F + N VVG NGSGKSNFF AI+FVLSD +LR S+
Sbjct: 1 MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLR-SE 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
R ALLHEG G +VV+A+VEIVFDN+D+R P
Sbjct: 60 DRHALLHEGAGHQVVSAFVEIVFDNSDNRFP 90
>sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm3 PE=1 SV=1
Length = 1194
Score = 120 bits (301), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/91 (62%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYI +++I GFKSYK+ TV+EP HNV+VGRNGSGKSNFF AI+FVLSD T L +
Sbjct: 1 MYITKIVIQGFKSYKDYTVIEPLSPHHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLSR-E 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
RQALLHEG G V++AYVE+ F N D+R P
Sbjct: 60 ERQALLHEGPGATVMSAYVEVTFANADNRFP 90
>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1
SV=1
Length = 1230
Score = 105 bits (263), Expect = 7e-23, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIK+VII GFK+Y+ +T+++ F NV++G NGSGKSNFF AI+FVLSD+ ++L+ +
Sbjct: 1 MYIKRVIIKGFKTYRNETIIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKR-E 59
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDH 88
RQ L+H+G+G V++A VEIVF + DH
Sbjct: 60 ERQGLIHQGSGGSVMSASVEIVFHDPDH 87
>sp|Q552D9|SMC3_DICDI Structural maintenance of chromosome protein 3 OS=Dictyostelium
discoideum GN=smc3 PE=3 SV=1
Length = 1437
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 1 MYIKQVIIHGFKSYKEQTVVE-PFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59
M+IK + I GF+SYK+Q NVV GRNG+GKSN F AI+F+L D + +S
Sbjct: 1 MFIKFIFIKGFRSYKDQGFTSITLHPGFNVVTGRNGAGKSNLFAAIRFLLGDLNVG-NNS 59
Query: 60 DSRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
+ R LLH G + YVEIVFDN+DHR P
Sbjct: 60 EDRLKLLHSYGGNTMQTGYVEIVFDNSDHRFP 91
>sp|Q8I1U7|SMC3_PLAF7 Structural maintenance of chromosomes protein 3 homolog
OS=Plasmodium falciparum (isolate 3D7) GN=PFD0685c PE=3
SV=1
Length = 1193
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIKQ+ + GF++YK +T ++ F + N +VG NGSGKSN AI+F+LSD +
Sbjct: 1 MYIKQIRLKGFRTYKNETTID-FTRGINCIVGFNGSGKSNILLAIEFILSDV------CE 53
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTD 87
+Q LHEG G V N YVEI+FDN++
Sbjct: 54 YKQIYLHEGIGNAVRNCYVEIIFDNSE 80
>sp|Q54PK4|SMC2_DICDI Structural maintenance of chromosomes protein 2 OS=Dictyostelium
discoideum GN=smc2 PE=3 SV=1
Length = 1184
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYI+ +II GFKSY +TV+E FD N + G NGSGKSN +I FVL + S D
Sbjct: 1 MYIEDIIIDGFKSYANRTVIEGFDPTFNAITGLNGSGKSNILDSICFVLGISNLSQVRVD 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
S Q L+++ + A V I F+N+D +
Sbjct: 61 SLQELVYKKGQAGITKASVTITFNNSDKK 89
>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1
SV=1
Length = 1170
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 53/87 (60%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M ++++II GFKSY +TV+ +D + N + G NGSGKSN AI FVL S S +
Sbjct: 1 MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTD 87
S Q L+++ V A V IVFDNTD
Sbjct: 61 SLQDLIYKRGQAGVTKASVTIVFDNTD 87
>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus
GN=SMC2 PE=2 SV=1
Length = 1189
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 52/89 (58%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYIK +++ GFKSY ++T + FD N + G NGSGKSN +I F+L + S +
Sbjct: 1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
S Q L+++ V A V I FDN+D +
Sbjct: 61 SLQDLVYKNGQAGVNKATVSITFDNSDKK 89
>sp|Q8CG48|SMC2_MOUSE Structural maintenance of chromosomes protein 2 OS=Mus musculus
GN=Smc2 PE=1 SV=2
Length = 1191
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MY+K +I+ GFKSY ++T V FD N + G NGSGKSN +I F+L + S +
Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
+ Q L+++ + A V I FDN+D +
Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKK 89
>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens
GN=SMC2 PE=1 SV=2
Length = 1197
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M+IK +I+ GFKSY ++T V FD N + G NGSGKSN +I F+L + S +
Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
+ Q L+++ + A V I FDN+D +
Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKK 89
>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis
thaliana GN=SMC2-1 PE=2 SV=2
Length = 1175
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M+IK++ + GFKSY +TVV FD N + G NGSGKSN +I FVL + +
Sbjct: 1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTD-HRVP 91
+ Q L+++ + A V + FDN++ HR P
Sbjct: 61 NLQELVYKQGQAGITKATVSVTFDNSERHRSP 92
>sp|P50533|SMC2_XENLA Structural maintenance of chromosomes protein 2 OS=Xenopus laevis
GN=smc2 PE=1 SV=1
Length = 1203
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M++K +II GFKSY ++T + FD N + G NGSGKSN +I F+L + + +
Sbjct: 1 MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
+ Q L+++ + A V I FDN D +
Sbjct: 61 NLQDLVYKNGQAGITKATVSITFDNYDKK 89
>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut14 PE=1 SV=2
Length = 1172
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 52/87 (59%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M I+++II GFKSY +TV+ +D + N + G NGSGKSN AI FVL + S +
Sbjct: 1 MKIEELIIDGFKSYAVRTVISNWDDQFNAITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTD 87
+ Q L+++ + A V IVF+N D
Sbjct: 61 NLQDLIYKRGQAGITRASVTIVFNNRD 87
>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis
thaliana GN=SMC2-2 PE=2 SV=1
Length = 1171
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M+IK++ + GFKSY +TVV FD N + G NGSGKSN +I FVL + +
Sbjct: 1 MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTD-HRVP 91
+ Q L+++ + A V + FDN++ +R P
Sbjct: 61 NLQELVYKQGQAGITRATVSVTFDNSERNRSP 92
>sp|Q8IED2|SMC2_PLAF7 Structural maintenance of chromosomes protein 2 OS=Plasmodium
falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1
Length = 1218
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MYI+++I+ GFKSY +TV+ PF + N + G NGSGKSN AI FV+ + +L +
Sbjct: 1 MYIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
L+++ + V I F+N + P
Sbjct: 61 RLDELIYKQGQAGITKGSVTIKFNNEEKPSP 91
>sp|Q09591|MIX1_CAEEL Mitotic chromosome and X-chromosome-associated protein mix-1
OS=Caenorhabditis elegans GN=mix-1 PE=1 SV=2
Length = 1244
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS-DESTSLRHS 59
M+IK + + GFKSY++ T + F N + G NGSGKSN +I F++ ++ ++R
Sbjct: 1 MHIKSIHLDGFKSYQKHTDILDFSPTFNAITGYNGSGKSNILDSICFIMGINKLDNIRAK 60
Query: 60 DSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGF 93
+ + H GT A V++ FDNTD R F
Sbjct: 61 SMHELISHGGT-----KAIVQVRFDNTDKRCSPF 89
>sp|A9II65|SMC_BORPD Chromosome partition protein Smc OS=Bordetella petrii (strain
ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=smc PE=3 SV=2
Length = 1176
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M + Q+ + GFKS+ + TV+ P + VVG NG GKSN A+++VL + S +
Sbjct: 1 MRLTQLKLAGFKSFVDPTVI-PVPSQLVGVVGPNGCGKSNIIDAVRWVLGEAKASELRGE 59
Query: 61 SRQALLHEGTGPR--VVNAYVEIVFDNTDHRVPG 92
S Q ++ G+G R A VE+VFDN++ R G
Sbjct: 60 SMQDVIFNGSGNRKPAARASVEMVFDNSEGRAAG 93
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1
SV=2
Length = 1177
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
YI+++ + GFKSY + VV PF K +VG NGSGKSN AI FVL S +
Sbjct: 3 YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR 62
Query: 62 RQALLHEGTG--PRVVNAYVEIVFDNTDHRVP 91
L+ G+ P A V I F+N D P
Sbjct: 63 ISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFP 94
>sp|Q81ZL2|SMC_COXBU Chromosome partition protein Smc OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=smc PE=3 SV=1
Length = 1169
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MY+K + + GFKS+ + T++ P N +VG NG GKSN A+++V+ + S
Sbjct: 1 MYLKTIKLAGFKSFVDPTLI-PIRGSMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQ 59
Query: 61 SRQALLHEGTGPR--VVNAYVEIVFDNTDHRVPG 92
S ++ GT R V A +E+ FDN++ R+ G
Sbjct: 60 SMSDVIFNGTTSRKPVGKASIELHFDNSEGRIGG 93
>sp|Q5H054|SMC_XANOR Chromosome partition protein Smc OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=smc PE=3 SV=2
Length = 1167
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M + + + GFKS+ + T + +VG NG GKSN A+++V+ + S S D
Sbjct: 1 MRLSTIKLSGFKSFVDPTTLH-LPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGD 59
Query: 61 SRQALLHEGTGPR--VVNAYVEIVFDNTDHRVPG 92
S ++ G+ R V A VE++FDN+DH + G
Sbjct: 60 SLTDVIFSGSSARKPVSQATVELIFDNSDHTISG 93
>sp|Q88WJ9|SMC_LACPL Chromosome partition protein Smc OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=smc PE=3
SV=1
Length = 1185
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHS 59
M +K + I GFKS+ ++T ++ F +VG NGSGKSN AI++VL +++ SLR +
Sbjct: 1 MQLKSLEISGFKSFADKTKID-FQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGT 59
Query: 60 DSRQALLHEGTGPRVVN-AYVEIVFDNTDHRVP 91
+ + +N A V I FDN+DH +P
Sbjct: 60 KMTDVIFAGSANRKPLNMAKVTITFDNSDHFLP 92
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
++K + I FKSYK + ++ PF +R ++G NGSGKSN AI FVL +++++LR
Sbjct: 3 FLKLIEIENFKSYKGRQIIGPF-QRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTL 61
Query: 62 RQALLHEGTG-PRVVNAYVEIVF 83
R + G P A+V +V+
Sbjct: 62 RDLIHGAPVGKPAANRAFVSMVY 84
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
++K + I FKSYK + ++ PF +R ++G NGSGKSN AI FVL +++++LR
Sbjct: 3 FLKLIEIENFKSYKGRQIIGPF-QRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTL 61
Query: 62 RQALLHEGTG-PRVVNAYVEIVF 83
R + G P A+V +V+
Sbjct: 62 RDLIHGAPVGKPAANRAFVSMVY 84
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
++K + I FKSYK + ++ PF +R ++G NGSGKSN AI FVL +++++LR
Sbjct: 3 FLKLIEIENFKSYKGRQIIGPF-QRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTL 61
Query: 62 RQALLHEGTG-PRVVNAYVEIVF 83
R + G P A+V +V+
Sbjct: 62 RDLIHGAPVGKPAANRAFVSMVY 84
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
++K + I FKSYK + ++ PF +R ++G NGSGKSN AI FVL +++++LR
Sbjct: 3 FLKLIEIENFKSYKGRQIIGPF-QRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTL 61
Query: 62 RQALLHEGTG-PRVVNAYVEIVF 83
R + G P A+V +V+
Sbjct: 62 RDLIHGAPVGKPAANRAFVSMVY 84
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus
laevis GN=smc1a PE=1 SV=1
Length = 1232
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
++K + I FKSYK + ++ PF R ++G NGSGKSN AI FVL +++++LR
Sbjct: 3 FLKLIEIENFKSYKGRQIIGPF-HRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTL 61
Query: 62 RQALLHEGTG-PRVVNAYVEIVF--DNTDHRV 90
R + G P A+V +V+ D+ + +V
Sbjct: 62 RDLIHGAPVGKPAANRAFVSMVYSEDSGEEKV 93
>sp|A9BZW2|SMC_DELAS Chromosome partition protein Smc OS=Delftia acidovorans (strain
DSM 14801 / SPH-1) GN=smc PE=3 SV=2
Length = 1175
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M + + + GFKS+ E T + VVG NG GKSN A+++VL + S +
Sbjct: 1 MRLNSIKLSGFKSFAEPTNFM-LPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGE 59
Query: 61 SRQALLHEGTGPR--VVNAYVEIVFDNTDHRVPG 92
S Q ++ GT R + VE+VFDN+DHR G
Sbjct: 60 SMQDVIFNGTTHRKPASRSSVELVFDNSDHRAGG 93
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
+YIK++++ FKSY + V PF K + VVG NGSGKSN A+ FV + +R +
Sbjct: 24 LYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNK 83
Query: 61 SRQALLHEGT 70
+ L+H T
Sbjct: 84 VSE-LIHNST 92
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHS 59
M++K++ + GFKS+ E+ V+ F K VVG NGSGKSN AI++VL ++S SLR
Sbjct: 1 MFLKRLDVIGFKSFAERISVD-FVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGG 59
Query: 60 DSRQALLHEGTGPRVVN-AYVEIVFDNTDHRVPGFIRCRSTSVDLYR 105
+ + +N A V + DN DH +P S + +YR
Sbjct: 60 KMEDIIFAGSDSRKRLNLAEVTLTLDNDDHFLPIDFHEVSVTRRVYR 106
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
YI+++++ GFKSY + P + VVG NG+GKSN AI F L S + +
Sbjct: 6 YIEKIVVEGFKSYGTKRKEIPLGEGFIAVVGPNGAGKSNIGDAISFALGLSSAKALRAKN 65
Query: 62 RQALLHEGTGPRVVNAYVEIVFDN 85
L+ G + +AYVE+ F N
Sbjct: 66 LSYLIFSKNGQKADHAYVEVHFKN 89
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum
subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM
8532 / LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHS 59
MY+K V I+GFKS+ ++ ++ F++ +VG NGSGKSN A+ +VL ++S ++R
Sbjct: 1 MYLKAVEINGFKSFGDKVYID-FNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAK 59
Query: 60 DSRQALLHEGTGPR-VVNAYVEIVFDNTD 87
+S+ + G + A V ++ DN D
Sbjct: 60 ESQDVIFSGGKEKKPATKAEVSLIIDNAD 88
>sp|Q920F6|SMC1B_MOUSE Structural maintenance of chromosomes protein 1B OS=Mus musculus
GN=Smc1b PE=1 SV=1
Length = 1248
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
+++ +++ FKS++ + V+ PF KR ++G NGSGKSN A+ FV+ +++T+LR +
Sbjct: 3 HLELLLVENFKSWRGRQVIGPF-KRFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKNI 61
Query: 62 RQALLHEGTG-PRVVNAYVEIVF 83
++ + TG P +A V I++
Sbjct: 62 QELIHGAHTGKPVSSSASVTIIY 84
>sp|Q73VM3|SMC_MYCPA Chromosome partition protein Smc OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=smc
PE=3 SV=2
Length = 1196
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MY+K + + GFKS+ T + F+ VVG NGSGKSN A+ +V+ ++
Sbjct: 1 MYLKSLTLKGFKSFASPTTLR-FEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGG 59
Query: 61 SRQALLHEGTGPR--VVNAYVEIVFDNTDHRVP 91
+ ++ GT R + A V + DN+D+ +P
Sbjct: 60 KMEDVIFAGTSSRAPLGRAEVTVTIDNSDNALP 92
>sp|Q9CBT5|SMC_MYCLE Chromosome partition protein Smc OS=Mycobacterium leprae (strain
TN) GN=smc PE=3 SV=1
Length = 1203
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MY+K + + GFKS+ T + F+ VVG NGSGKSN A+ +V+ ++
Sbjct: 1 MYLKSLTLKGFKSFASPTTLR-FEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGS 59
Query: 61 SRQALLHEGTGPR--VVNAYVEIVFDNTDHRVP 91
+ ++ GT R + A V ++ DN+D+ +P
Sbjct: 60 KMEDVIFAGTLSRAPLGRAEVTLIIDNSDNVLP 92
>sp|Q10970|SMC_MYCTU Chromosome partition protein Smc OS=Mycobacterium tuberculosis
GN=smc PE=3 SV=2
Length = 1205
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MY+K + + GFKS+ T + F+ VVG NGSGKSN A+ +V+ ++
Sbjct: 1 MYLKSLTLKGFKSFAAPTTLR-FEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGG 59
Query: 61 SRQALLHEGTGPR--VVNAYVEIVFDNTDHRVP 91
+ ++ GT R + A V + DN+D+ +P
Sbjct: 60 KMEDVIFAGTSSRAPLGRAEVTVSIDNSDNALP 92
>sp|E1X022|SMC_BACMS Chromosome partition protein Smc OS=Bacteriovorax marinus (strain
ATCC BAA-682 / DSM 15412 / SJ) GN=smc PE=3 SV=2
Length = 1226
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M +K+++I GFKS+K++T + FD +VG NG GKSN A+ +V+ ++S
Sbjct: 1 MKLKRLVIQGFKSFKDRTTIH-FDDGITGIVGPNGCGKSNIVDALFWVMGEQSAKHLRGK 59
Query: 61 SRQALLHEGTGPRVVNAYVE--IVFDNTDHR 89
S + L+ G+ AY E +V N D +
Sbjct: 60 SMKDLIFAGSSKYNPGAYAEATLVLGNDDGK 90
>sp|P41004|SMC4_SCHPO Structural maintenance of chromosomes protein 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut3 PE=1 SV=2
Length = 1324
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
+ + ++ + FKSY +V PF + +VG NGSGKSN A+ FV ++ LR S
Sbjct: 124 LVVYELRLTNFKSYAGTQIVGPFHPSFSSIVGPNGSGKSNVIDALLFVFGFRASKLRQSK 183
Query: 61 SRQALLHE-GTGPRVVNAYVEIVFDNTD 87
+ AL+H+ T P + + VEI F +
Sbjct: 184 A-SALIHKSATHPSLDSCDVEITFKEVN 210
>sp|Q24U48|SMC_DESHY Chromosome partition protein Smc OS=Desulfitobacterium hafniense
(strain Y51) GN=smc PE=3 SV=1
Length = 1198
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
+++K + I GFKS+ ++ +E + +VVVG NGSGKSN AI++VL ++S
Sbjct: 9 VFLKSITIQGFKSFADKVKLE-LGQGLSVVVGPNGSGKSNVADAIRWVLGEQSAKNLRGS 67
Query: 61 SRQALLHEGTGPR--VVNAYVEIVFDNTDHRVP 91
+ ++ G+ R V A V + FDN+ P
Sbjct: 68 KMEDVIFSGSSVRRPVGMAEVSLFFDNSTGIFP 100
>sp|C4ZJU1|SMC_THASP Chromosome partition protein Smc OS=Thauera sp. (strain MZ1T)
GN=smc PE=3 SV=2
Length = 1208
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 1 MYIKQVIIHGFKSYKE-QTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59
M + ++ + GFK++ + TV+ P + VVG NG GKSN A+++VL + S
Sbjct: 1 MRLSKLKLAGFKTFVDPTTVLTPGNLVG--VVGPNGCGKSNIIDAVRWVLGETRASALRG 58
Query: 60 DSRQALLHEGTGPR--VVNAYVEIVFDNTDHRVPG 92
+S Q ++ G+ R V A VE+VFDN + R G
Sbjct: 59 ESMQDVIFNGSTTRKPVSRASVELVFDNAEGRAAG 93
>sp|Q6N1B7|SMC_RHOPA Chromosome partition protein Smc OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=smc PE=3 SV=2
Length = 1154
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 1 MYIKQVIIHGFKSYKEQT--VVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLR 57
M + ++ +HGFKS+ E T ++EP VVG NG GKSN A+++ + + S SLR
Sbjct: 1 MKLTRLRLHGFKSFVEPTDFMIEP---GLTGVVGPNGCGKSNLVEALRWAMGETSHKSLR 57
Query: 58 HSDSRQALLHEGTGPRVVNAYVEIVF--DNTDHRVPG 92
+D A++ G+G R + E+V DN+D P
Sbjct: 58 ATD-MDAVIFAGSGNRPARNHAEVVMSIDNSDRTAPA 93
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1
SV=1
Length = 1418
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
++I ++++ FKSY + VV PF + VVG NGSGKSN ++ FV + +R D
Sbjct: 154 LFINELVLENFKSYAGKQVVGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMRQ-D 212
Query: 61 SRQALLHEGTG-PRV----VNAYVEIVFDNT------DHRVPGFIRCR 97
L+H+ P + V + + V D + D PG I R
Sbjct: 213 RLSDLIHKSEAFPSLQSCSVAVHFQYVIDESSGTSRIDEEKPGLIITR 260
>sp|Q8KBS6|SMC_CHLTE Chromosome partition protein Smc OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=smc PE=3 SV=1
Length = 1183
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
MY+ ++ + GFKS+ + + FDK +VG NG GK+N AI++VL ++ + L S
Sbjct: 1 MYLSKIELFGFKSFAHRVRIH-FDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSMLLRSP 59
Query: 61 SRQALLHEGTGPRVVNAYVE--IVFDNTDHRVPGFIRCRSTSVDLYR 105
+ ++ GT ++ E I +NT + +P + + LYR
Sbjct: 60 KMENIIFNGTKRLKPLSFTEVSITIENTRNILPTEYTEVTVTRRLYR 106
>sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=smc PE=3 SV=1
Length = 1140
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
YI+++ H FKS++ + V+ F K NV+ G NGSGKSN + FVL +S +D
Sbjct: 4 YIERIEAHNFKSFRRKKVIN-FTKGLNVISGPNGSGKSNIGDMLLFVLGTKSIHAVRADR 62
Query: 62 RQALLHEGTGPRVVNAYVEIVFDNTDHR 89
L+ +G+G V + F + D R
Sbjct: 63 LSDLVSKGSGNE---CSVSVTFRSDDGR 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,414,333
Number of Sequences: 539616
Number of extensions: 1540935
Number of successful extensions: 5234
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 5059
Number of HSP's gapped (non-prelim): 312
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)