Query psy16868
Match_columns 109
No_of_seqs 186 out of 1541
Neff 9.5
Searched_HMMs 46136
Date Sat Aug 17 00:08:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.7E-19 3.8E-24 121.0 10.7 87 1-88 1-88 (251)
2 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.3E-19 2.8E-24 120.9 7.5 88 3-91 1-88 (243)
3 COG1120 FepC ABC-type cobalami 99.8 4.1E-19 9E-24 119.0 5.6 86 5-94 2-93 (258)
4 COG1126 GlnQ ABC-type polar am 99.8 1.3E-19 2.8E-24 117.9 3.1 80 6-88 3-88 (240)
5 COG3839 MalK ABC-type sugar tr 99.8 1.1E-18 2.3E-23 120.8 5.4 76 5-86 3-84 (338)
6 COG1196 Smc Chromosome segrega 99.7 8.9E-18 1.9E-22 131.6 9.8 88 1-90 1-91 (1163)
7 COG1124 DppF ABC-type dipeptid 99.7 1.1E-18 2.5E-23 115.1 3.8 97 5-104 3-109 (252)
8 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 2.1E-18 4.6E-23 115.2 5.1 83 5-94 4-94 (254)
9 cd03275 ABC_SMC1_euk Eukaryoti 99.7 3E-17 6.4E-22 110.1 10.4 87 3-91 1-89 (247)
10 COG3842 PotA ABC-type spermidi 99.7 4.1E-18 9E-23 118.5 5.3 77 4-86 4-86 (352)
11 cd03278 ABC_SMC_barmotin Barmo 99.7 1.9E-17 4.2E-22 107.8 8.0 87 3-90 1-89 (197)
12 PF02463 SMC_N: RecF/RecN/SMC 99.7 1.2E-16 2.6E-21 105.2 9.6 87 2-89 1-89 (220)
13 cd03279 ABC_sbcCD SbcCD and ot 99.7 4.3E-17 9.2E-22 107.2 7.4 86 1-92 1-91 (213)
14 COG3638 ABC-type phosphate/pho 99.7 9.8E-18 2.1E-22 110.4 3.4 84 5-89 3-93 (258)
15 COG1118 CysA ABC-type sulfate/ 99.7 1.6E-17 3.4E-22 112.9 4.0 79 6-87 3-87 (345)
16 COG1116 TauB ABC-type nitrate/ 99.7 3.2E-17 6.9E-22 108.7 5.2 74 5-87 3-82 (248)
17 KOG0964|consensus 99.7 1.3E-16 2.7E-21 120.1 7.1 90 1-91 1-90 (1200)
18 PRK00064 recF recombination pr 99.7 5.1E-16 1.1E-20 109.1 9.8 86 1-95 1-86 (361)
19 COG1117 PstB ABC-type phosphat 99.7 4E-17 8.6E-22 106.4 3.0 83 3-87 5-98 (253)
20 COG1122 CbiO ABC-type cobalt t 99.7 1.2E-16 2.6E-21 106.4 5.2 83 6-91 4-93 (235)
21 TIGR00618 sbcc exonuclease Sbc 99.7 4.6E-16 9.9E-21 121.1 8.4 90 1-94 1-92 (1042)
22 TIGR02168 SMC_prok_B chromosom 99.7 1.1E-15 2.4E-20 119.0 10.5 85 2-88 1-88 (1179)
23 COG0419 SbcC ATPase involved i 99.6 3.7E-16 8.1E-21 120.3 7.6 92 1-97 1-92 (908)
24 COG1136 SalX ABC-type antimicr 99.6 4.9E-17 1.1E-21 107.2 2.3 84 6-89 2-95 (226)
25 cd03240 ABC_Rad50 The catalyti 99.6 1E-15 2.2E-20 100.1 8.5 84 3-91 1-86 (204)
26 cd03242 ABC_RecF RecF is a rec 99.6 1.7E-15 3.6E-20 102.8 9.3 85 3-96 1-85 (270)
27 PRK14079 recF recombination pr 99.6 2.1E-15 4.6E-20 105.6 9.9 79 1-89 1-79 (349)
28 KOG0018|consensus 99.6 2.2E-16 4.8E-21 119.7 5.1 100 1-107 2-102 (1141)
29 PRK02224 chromosome segregatio 99.6 1.2E-15 2.6E-20 117.0 8.9 87 1-96 1-87 (880)
30 cd03239 ABC_SMC_head The struc 99.6 1.4E-15 3E-20 97.7 7.8 82 3-86 1-82 (178)
31 PRK13537 nodulation ABC transp 99.6 3.3E-16 7.1E-21 108.0 5.2 82 1-87 3-90 (306)
32 COG0410 LivF ABC-type branched 99.6 2.1E-16 4.5E-21 103.8 3.3 78 6-86 4-87 (237)
33 PRK13536 nodulation factor exp 99.6 5.1E-16 1.1E-20 108.4 5.4 79 4-87 40-124 (340)
34 COG1131 CcmA ABC-type multidru 99.6 2.7E-16 5.8E-21 107.9 3.9 79 4-87 3-88 (293)
35 cd03274 ABC_SMC4_euk Eukaryoti 99.6 2.2E-15 4.8E-20 99.1 8.0 51 1-51 1-51 (212)
36 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 2.1E-16 4.6E-21 103.9 3.0 81 7-87 2-92 (218)
37 PRK01156 chromosome segregatio 99.6 2.1E-15 4.6E-20 115.9 8.8 86 1-96 1-86 (895)
38 PRK13634 cbiO cobalt transport 99.6 4.1E-16 9E-21 106.7 4.2 85 5-89 2-97 (290)
39 cd03276 ABC_SMC6_euk Eukaryoti 99.6 3.1E-15 6.6E-20 97.5 7.9 79 3-87 1-79 (198)
40 PRK11650 ugpC glycerol-3-phosp 99.6 8.9E-16 1.9E-20 107.8 5.2 76 5-86 3-85 (356)
41 PRK03918 chromosome segregatio 99.6 3.7E-15 8E-20 114.2 8.8 90 1-96 1-90 (880)
42 cd03296 ABC_CysA_sulfate_impor 99.6 1.7E-15 3.7E-20 101.0 6.2 76 6-87 3-84 (239)
43 PRK13646 cbiO cobalt transport 99.6 5.2E-16 1.1E-20 106.0 3.7 83 6-88 3-96 (286)
44 TIGR03265 PhnT2 putative 2-ami 99.6 9.1E-16 2E-20 107.6 5.0 76 5-86 4-85 (353)
45 PF13555 AAA_29: P-loop contai 99.6 1.3E-15 2.8E-20 81.6 4.4 49 3-53 1-51 (62)
46 PRK14250 phosphate ABC transpo 99.6 1.1E-15 2.4E-20 102.1 4.9 78 5-86 3-86 (241)
47 cd03224 ABC_TM1139_LivF_branch 99.6 5.3E-16 1.1E-20 102.2 3.3 78 6-86 1-84 (222)
48 cd03218 ABC_YhbG The ABC trans 99.6 7.2E-16 1.6E-20 102.2 3.9 78 6-86 1-84 (232)
49 PRK11432 fbpC ferric transport 99.6 1.2E-15 2.6E-20 107.0 5.1 76 5-86 6-87 (351)
50 COG2884 FtsE Predicted ATPase 99.6 7.8E-16 1.7E-20 98.8 3.8 81 6-87 2-89 (223)
51 cd03261 ABC_Org_Solvent_Resist 99.6 7E-16 1.5E-20 102.6 3.7 79 6-86 1-86 (235)
52 COG3845 ABC-type uncharacteriz 99.6 4.7E-16 1E-20 110.9 3.0 81 5-88 4-90 (501)
53 COG1127 Ttg2A ABC-type transpo 99.6 5.9E-16 1.3E-20 102.3 3.2 81 5-86 8-94 (263)
54 cd03219 ABC_Mj1267_LivG_branch 99.6 5.9E-16 1.3E-20 102.9 3.2 78 7-87 2-85 (236)
55 cd03265 ABC_DrrA DrrA is the A 99.6 8.6E-16 1.9E-20 101.2 3.9 77 6-87 1-83 (220)
56 cd03259 ABC_Carb_Solutes_like 99.6 1.1E-15 2.4E-20 100.2 4.5 75 7-87 2-82 (213)
57 PRK10851 sulfate/thiosulfate t 99.6 1.7E-15 3.7E-20 106.2 5.6 75 6-86 3-83 (353)
58 TIGR02169 SMC_prok_A chromosom 99.6 9.8E-15 2.1E-19 114.0 10.2 87 2-89 1-88 (1164)
59 PRK11000 maltose/maltodextrin 99.6 1.7E-15 3.7E-20 106.8 5.4 77 5-87 3-85 (369)
60 COG0411 LivG ABC-type branched 99.6 2.6E-16 5.5E-21 104.1 1.1 78 6-86 5-88 (250)
61 PRK09452 potA putrescine/sperm 99.6 1.6E-15 3.4E-20 107.1 5.1 77 5-87 14-96 (375)
62 TIGR03258 PhnT 2-aminoethylpho 99.6 1.9E-15 4.2E-20 106.3 5.4 78 4-87 4-89 (362)
63 TIGR01288 nodI ATP-binding ABC 99.6 1.4E-15 3E-20 104.7 4.6 77 6-87 5-87 (303)
64 TIGR03410 urea_trans_UrtE urea 99.6 8.6E-16 1.9E-20 101.8 3.4 78 7-87 2-85 (230)
65 PRK13638 cbiO cobalt transport 99.6 9.9E-16 2.1E-20 103.9 3.6 80 6-87 2-87 (271)
66 PRK09536 btuD corrinoid ABC tr 99.6 1.5E-15 3.2E-20 108.0 4.7 79 6-88 4-88 (402)
67 cd03262 ABC_HisP_GlnQ_permease 99.6 1E-15 2.2E-20 100.3 3.5 79 7-87 2-86 (213)
68 TIGR00611 recf recF protein. A 99.6 1.9E-14 4.2E-19 101.3 10.2 81 1-90 1-81 (365)
69 COG1125 OpuBA ABC-type proline 99.6 3.9E-16 8.4E-21 104.1 1.5 77 6-86 2-84 (309)
70 PRK13643 cbiO cobalt transport 99.6 1.2E-15 2.7E-20 104.3 4.0 84 6-89 2-96 (288)
71 cd03277 ABC_SMC5_euk Eukaryoti 99.6 1E-14 2.2E-19 96.1 8.1 81 2-88 2-82 (213)
72 COG1135 AbcC ABC-type metal io 99.6 7.6E-16 1.7E-20 104.9 2.8 82 6-88 2-94 (339)
73 cd03301 ABC_MalK_N The N-termi 99.6 2.8E-15 6.2E-20 98.2 5.4 75 7-87 2-82 (213)
74 PRK10247 putative ABC transpor 99.6 1.8E-15 3.9E-20 100.1 4.5 78 6-87 8-91 (225)
75 PRK11629 lolD lipoprotein tran 99.6 1.1E-15 2.3E-20 101.6 3.3 80 5-86 5-96 (233)
76 PRK10895 lipopolysaccharide AB 99.6 1.7E-15 3.6E-20 101.1 4.2 79 5-86 3-87 (241)
77 PRK13647 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 103.5 3.6 80 5-88 4-90 (274)
78 PRK13644 cbiO cobalt transport 99.6 1.8E-15 4E-20 102.8 4.3 80 6-88 2-88 (274)
79 cd03257 ABC_NikE_OppD_transpor 99.6 2.6E-15 5.7E-20 99.2 4.9 80 6-87 2-92 (228)
80 PRK11614 livF leucine/isoleuci 99.6 1.7E-15 3.7E-20 100.8 4.1 81 4-87 4-90 (237)
81 PRK13641 cbiO cobalt transport 99.6 1.9E-15 4.1E-20 103.3 4.4 83 5-87 2-95 (287)
82 cd03293 ABC_NrtD_SsuB_transpor 99.6 2.2E-15 4.8E-20 99.3 4.5 72 7-87 2-83 (220)
83 cd03263 ABC_subfamily_A The AB 99.6 1.5E-15 3.2E-20 100.0 3.7 76 6-86 1-84 (220)
84 cd03269 ABC_putative_ATPase Th 99.6 2.1E-15 4.6E-20 98.7 4.3 72 7-86 2-79 (210)
85 COG1195 RecF Recombinational D 99.6 1.5E-14 3.2E-19 101.0 8.7 87 1-96 1-87 (363)
86 TIGR00960 3a0501s02 Type II (G 99.6 1.3E-15 2.9E-20 100.0 3.4 81 6-87 2-90 (216)
87 cd03216 ABC_Carb_Monos_I This 99.6 2E-15 4.4E-20 95.6 4.0 76 6-84 1-82 (163)
88 PRK13637 cbiO cobalt transport 99.6 2.7E-15 5.9E-20 102.6 4.8 83 5-89 2-95 (287)
89 PRK13651 cobalt transporter AT 99.6 2.6E-15 5.7E-20 103.5 4.7 56 5-60 2-68 (305)
90 PRK13648 cbiO cobalt transport 99.6 2E-15 4.4E-20 102.3 4.0 83 1-87 3-93 (269)
91 cd03260 ABC_PstB_phosphate_tra 99.6 1.8E-15 3.8E-20 100.1 3.6 80 6-87 1-91 (227)
92 PRK13635 cbiO cobalt transport 99.6 2.4E-15 5.3E-20 102.5 4.3 83 1-87 1-91 (279)
93 cd03226 ABC_cobalt_CbiO_domain 99.6 1.7E-15 3.6E-20 98.9 3.3 73 8-87 2-81 (205)
94 PRK10584 putative ABC transpor 99.6 1.7E-15 3.7E-20 100.2 3.4 82 5-87 6-98 (228)
95 PRK11607 potG putrescine trans 99.6 3.2E-15 6.9E-20 105.6 4.9 77 5-87 19-101 (377)
96 TIGR02211 LolD_lipo_ex lipopro 99.6 1.7E-15 3.7E-20 99.8 3.3 79 6-86 2-92 (221)
97 PRK11701 phnK phosphonate C-P 99.6 2E-15 4.3E-20 101.7 3.7 82 5-87 6-99 (258)
98 cd03230 ABC_DR_subfamily_A Thi 99.6 3.3E-15 7.1E-20 95.3 4.5 76 7-87 2-83 (173)
99 TIGR02314 ABC_MetN D-methionin 99.6 1.9E-15 4E-20 105.7 3.7 81 6-87 2-92 (343)
100 cd03266 ABC_NatA_sodium_export 99.6 2.5E-15 5.4E-20 98.8 4.0 76 6-86 2-87 (218)
101 TIGR02315 ABC_phnC phosphonate 99.6 1.5E-15 3.2E-20 101.4 2.9 81 6-87 2-89 (243)
102 TIGR03608 L_ocin_972_ABC putat 99.6 1E-15 2.2E-20 99.8 2.1 78 9-86 2-85 (206)
103 KOG0933|consensus 99.6 2E-15 4.2E-20 114.1 3.9 88 1-89 1-89 (1174)
104 cd03268 ABC_BcrA_bacitracin_re 99.6 2.7E-15 5.8E-20 98.1 4.0 74 7-86 2-81 (208)
105 TIGR01978 sufC FeS assembly AT 99.6 3E-15 6.6E-20 99.8 4.3 79 6-87 1-87 (243)
106 TIGR02673 FtsE cell division A 99.6 2E-15 4.3E-20 99.1 3.4 81 6-87 2-89 (214)
107 PRK11247 ssuB aliphatic sulfon 99.6 3.3E-15 7.1E-20 100.8 4.5 73 5-86 12-90 (257)
108 cd03256 ABC_PhnC_transporter A 99.6 2.2E-15 4.9E-20 100.3 3.6 80 7-87 2-88 (241)
109 KOG0996|consensus 99.6 2.8E-15 6.1E-20 114.6 4.5 85 1-86 84-169 (1293)
110 PRK13649 cbiO cobalt transport 99.6 2.7E-15 5.9E-20 102.1 4.1 81 6-86 3-94 (280)
111 cd03235 ABC_Metallic_Cations A 99.6 1.8E-15 3.9E-20 99.2 3.1 71 8-87 2-78 (213)
112 PRK13652 cbiO cobalt transport 99.6 3.5E-15 7.5E-20 101.6 4.6 78 6-87 4-88 (277)
113 PRK10253 iron-enterobactin tra 99.6 3.1E-15 6.8E-20 101.2 4.2 80 4-87 6-91 (265)
114 PRK13548 hmuV hemin importer A 99.6 3.7E-15 8E-20 100.5 4.5 79 6-88 3-87 (258)
115 TIGR03522 GldA_ABC_ATP gliding 99.6 2.8E-15 6.2E-20 103.1 4.0 77 6-87 3-85 (301)
116 PRK11248 tauB taurine transpor 99.6 5.1E-15 1.1E-19 99.7 5.1 72 6-86 2-79 (255)
117 TIGR03411 urea_trans_UrtD urea 99.6 3.3E-15 7.2E-20 99.6 4.1 78 6-86 3-86 (242)
118 PRK09493 glnQ glutamine ABC tr 99.6 3.7E-15 7.9E-20 99.4 4.3 79 6-86 2-86 (240)
119 PRK10908 cell division protein 99.6 2.7E-15 5.8E-20 99.0 3.6 81 6-87 2-89 (222)
120 cd03229 ABC_Class3 This class 99.6 3.9E-15 8.5E-20 95.4 4.2 79 7-87 2-86 (178)
121 cd03295 ABC_OpuCA_Osmoprotecti 99.6 3.8E-15 8.2E-20 99.5 4.2 76 7-86 2-84 (242)
122 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 4E-15 8.7E-20 99.0 4.3 77 6-87 2-84 (236)
123 PRK11231 fecE iron-dicitrate t 99.6 3.3E-15 7.1E-20 100.5 3.8 78 6-87 3-86 (255)
124 PRK10619 histidine/lysine/argi 99.6 3.6E-15 7.8E-20 100.4 4.0 87 1-87 1-102 (257)
125 PRK14267 phosphate ABC transpo 99.6 6.5E-15 1.4E-19 98.9 5.2 84 1-87 1-95 (253)
126 COG1129 MglA ABC-type sugar tr 99.6 2.4E-15 5.1E-20 108.5 3.2 80 5-87 8-93 (500)
127 PRK11124 artP arginine transpo 99.6 4.3E-15 9.4E-20 99.1 4.3 82 6-87 3-92 (242)
128 PRK11831 putative ABC transpor 99.6 3.8E-15 8.3E-20 101.0 4.1 81 5-86 7-93 (269)
129 cd03241 ABC_RecN RecN ATPase i 99.5 4.1E-14 9E-19 96.3 9.1 70 3-86 1-70 (276)
130 cd03225 ABC_cobalt_CbiO_domain 99.5 2E-15 4.4E-20 98.8 2.6 76 8-87 2-85 (211)
131 TIGR00972 3a0107s01c2 phosphat 99.5 4.9E-15 1.1E-19 99.2 4.4 80 6-87 2-92 (247)
132 PRK15112 antimicrobial peptide 99.5 6.4E-15 1.4E-19 99.8 5.0 78 6-87 5-97 (267)
133 PRK10575 iron-hydroxamate tran 99.5 4.1E-15 8.9E-20 100.6 4.0 79 5-87 11-95 (265)
134 PRK13633 cobalt transporter AT 99.5 5.2E-15 1.1E-19 100.8 4.5 81 5-88 4-96 (280)
135 PRK10744 pstB phosphate transp 99.5 8.2E-15 1.8E-19 98.8 5.4 81 5-87 13-104 (260)
136 PRK14270 phosphate ABC transpo 99.5 8.1E-15 1.8E-19 98.3 5.4 84 1-87 1-95 (251)
137 COG4167 SapF ABC-type antimicr 99.5 8.8E-16 1.9E-20 98.5 0.6 75 25-103 39-113 (267)
138 TIGR02323 CP_lyasePhnK phospho 99.5 3.9E-15 8.5E-20 99.9 3.8 82 6-87 4-96 (253)
139 PRK13540 cytochrome c biogenes 99.5 5.9E-15 1.3E-19 96.1 4.5 76 6-86 2-83 (200)
140 PRK15093 antimicrobial peptide 99.5 2.6E-15 5.7E-20 104.5 2.9 83 6-90 4-102 (330)
141 PRK09544 znuC high-affinity zi 99.5 8.1E-15 1.8E-19 98.6 5.2 68 5-87 4-77 (251)
142 PRK11153 metN DL-methionine tr 99.5 3.2E-15 6.9E-20 104.5 3.3 81 6-87 2-92 (343)
143 PRK13636 cbiO cobalt transport 99.5 5.4E-15 1.2E-19 100.9 4.4 84 3-88 3-93 (283)
144 PRK13645 cbiO cobalt transport 99.5 8.3E-15 1.8E-19 100.2 5.3 84 4-87 5-100 (289)
145 PRK13650 cbiO cobalt transport 99.5 3.4E-15 7.3E-20 101.7 3.3 79 5-87 4-91 (279)
146 PRK11300 livG leucine/isoleuci 99.5 4.8E-15 1E-19 99.6 4.0 79 5-86 5-89 (255)
147 cd03258 ABC_MetN_methionine_tr 99.5 5.5E-15 1.2E-19 98.1 4.2 80 6-87 2-92 (233)
148 PRK14247 phosphate ABC transpo 99.5 9.8E-15 2.1E-19 97.9 5.4 79 5-87 3-92 (250)
149 cd03250 ABCC_MRP_domain1 Domai 99.5 1.2E-14 2.7E-19 94.7 5.6 63 7-86 2-75 (204)
150 PRK09700 D-allose transporter 99.5 4E-15 8.6E-20 108.5 3.6 81 4-87 4-90 (510)
151 PRK14235 phosphate transporter 99.5 1E-14 2.3E-19 98.7 5.4 81 5-87 19-110 (267)
152 cd03264 ABC_drug_resistance_li 99.5 4.4E-15 9.5E-20 97.3 3.5 76 7-87 2-82 (211)
153 COG4559 ABC-type hemin transpo 99.5 2.4E-15 5.1E-20 98.1 2.1 85 6-94 2-92 (259)
154 cd03246 ABCC_Protease_Secretio 99.5 4.9E-15 1.1E-19 94.5 3.6 76 7-86 2-85 (173)
155 PRK10762 D-ribose transporter 99.5 4.2E-15 9.1E-20 108.2 3.6 79 5-86 4-88 (501)
156 PRK13632 cbiO cobalt transport 99.5 7.2E-15 1.6E-19 99.7 4.6 79 5-87 7-93 (271)
157 PRK14242 phosphate transporter 99.5 1E-14 2.2E-19 98.0 5.2 80 5-86 6-96 (253)
158 COG1123 ATPase components of v 99.5 4.7E-15 1E-19 107.6 3.7 95 6-102 281-392 (539)
159 cd03292 ABC_FtsE_transporter F 99.5 2.8E-15 6E-20 98.3 2.3 80 7-87 2-88 (214)
160 PRK11264 putative amino-acid A 99.5 5.6E-15 1.2E-19 99.0 3.8 81 6-86 4-94 (250)
161 PRK13639 cbiO cobalt transport 99.5 6.4E-15 1.4E-19 100.2 4.1 80 6-87 2-88 (275)
162 PRK14248 phosphate ABC transpo 99.5 1.2E-14 2.7E-19 98.4 5.4 80 6-87 22-112 (268)
163 cd03254 ABCC_Glucan_exporter_l 99.5 4.9E-15 1.1E-19 98.1 3.4 78 5-86 2-86 (229)
164 PRK14241 phosphate transporter 99.5 9.1E-15 2E-19 98.5 4.7 82 4-87 3-95 (258)
165 PRK14273 phosphate ABC transpo 99.5 1.2E-14 2.6E-19 97.6 5.1 81 5-87 7-98 (254)
166 PRK13547 hmuV hemin importer A 99.5 6.4E-15 1.4E-19 100.1 3.8 78 6-87 2-93 (272)
167 PRK10246 exonuclease subunit S 99.5 3.1E-14 6.7E-19 111.0 8.0 89 1-94 1-96 (1047)
168 cd03228 ABCC_MRP_Like The MRP 99.5 4.3E-15 9.3E-20 94.6 2.7 76 7-86 2-85 (171)
169 TIGR03005 ectoine_ehuA ectoine 99.5 4.8E-15 1E-19 99.5 3.1 54 7-60 2-61 (252)
170 cd03251 ABCC_MsbA MsbA is an e 99.5 4.6E-15 9.9E-20 98.5 2.9 76 7-86 2-85 (234)
171 TIGR03873 F420-0_ABC_ATP propo 99.5 7.1E-15 1.5E-19 98.9 3.9 78 6-87 2-85 (256)
172 cd03231 ABC_CcmA_heme_exporter 99.5 9.1E-15 2E-19 95.3 4.3 76 7-87 2-83 (201)
173 PRK13631 cbiO cobalt transport 99.5 8.7E-15 1.9E-19 101.5 4.4 84 5-88 21-127 (320)
174 PRK10418 nikD nickel transport 99.5 1.8E-14 3.9E-19 96.9 5.8 76 5-87 4-89 (254)
175 PRK14253 phosphate ABC transpo 99.5 1.4E-14 3E-19 97.1 5.2 80 5-87 3-93 (249)
176 PRK13538 cytochrome c biogenes 99.5 9.7E-15 2.1E-19 95.3 4.3 76 6-86 2-83 (204)
177 PRK13543 cytochrome c biogenes 99.5 1.5E-14 3.2E-19 95.1 5.2 74 6-86 12-91 (214)
178 PRK14256 phosphate ABC transpo 99.5 2.1E-14 4.5E-19 96.4 6.0 82 4-87 3-95 (252)
179 PRK15439 autoinducer 2 ABC tra 99.5 8E-15 1.7E-19 107.0 4.0 80 5-87 11-96 (510)
180 PRK11308 dppF dipeptide transp 99.5 4.4E-15 9.6E-20 103.2 2.5 85 5-90 5-105 (327)
181 cd03247 ABCC_cytochrome_bd The 99.5 6.1E-15 1.3E-19 94.4 3.0 75 7-86 2-84 (178)
182 PRK11022 dppD dipeptide transp 99.5 4.5E-15 9.7E-20 103.2 2.5 85 6-90 4-102 (326)
183 PRK14262 phosphate ABC transpo 99.5 1.4E-14 3.1E-19 97.1 4.8 80 6-87 4-94 (250)
184 PRK14259 phosphate ABC transpo 99.5 1.1E-14 2.4E-19 98.8 4.2 80 5-86 13-103 (269)
185 cd03217 ABC_FeS_Assembly ABC-t 99.5 1.1E-14 2.4E-19 94.9 4.0 77 7-86 2-86 (200)
186 PRK14238 phosphate transporter 99.5 1.8E-14 3.8E-19 97.8 5.1 80 6-87 25-115 (271)
187 TIGR01189 ccmA heme ABC export 99.5 1.1E-14 2.5E-19 94.6 4.0 75 7-86 2-82 (198)
188 cd03369 ABCC_NFT1 Domain 2 of 99.5 1.2E-14 2.5E-19 95.0 4.0 78 5-86 6-91 (207)
189 PRK14274 phosphate ABC transpo 99.5 2.2E-14 4.7E-19 96.7 5.3 81 5-87 12-103 (259)
190 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 2.3E-14 5E-19 89.1 5.0 52 7-58 2-59 (144)
191 PRK14237 phosphate transporter 99.5 2.1E-14 4.6E-19 97.2 5.2 80 5-86 20-110 (267)
192 PRK14252 phosphate ABC transpo 99.5 2.2E-14 4.7E-19 97.0 5.2 82 5-86 16-108 (265)
193 PRK14240 phosphate transporter 99.5 2.4E-14 5.3E-19 95.9 5.5 81 5-87 3-94 (250)
194 PRK14272 phosphate ABC transpo 99.5 2.7E-14 6E-19 95.7 5.7 82 4-87 3-95 (252)
195 cd03248 ABCC_TAP TAP, the Tran 99.5 1.2E-14 2.6E-19 96.1 3.9 78 5-86 11-97 (226)
196 PRK15079 oligopeptide ABC tran 99.5 7.5E-15 1.6E-19 102.2 3.0 82 6-88 9-109 (331)
197 cd03223 ABCD_peroxisomal_ALDP 99.5 2.9E-14 6.4E-19 90.5 5.4 66 7-87 2-74 (166)
198 cd03290 ABCC_SUR1_N The SUR do 99.5 2E-14 4.3E-19 94.6 4.7 81 7-87 2-89 (218)
199 PRK09580 sufC cysteine desulfu 99.5 1.8E-14 3.8E-19 96.4 4.5 78 6-86 2-87 (248)
200 PHA02562 46 endonuclease subun 99.5 1.1E-13 2.4E-18 101.8 9.1 89 1-96 2-92 (562)
201 cd03245 ABCC_bacteriocin_expor 99.5 1E-14 2.2E-19 96.0 3.3 79 5-87 2-88 (220)
202 PRK15056 manganese/iron transp 99.5 2E-14 4.3E-19 97.6 4.8 76 5-87 6-88 (272)
203 PRK14251 phosphate ABC transpo 99.5 2.6E-14 5.7E-19 95.8 5.3 81 5-87 4-95 (251)
204 PRK09473 oppD oligopeptide tra 99.5 5.4E-15 1.2E-19 102.9 2.0 85 5-90 12-110 (330)
205 PRK14269 phosphate ABC transpo 99.5 1.6E-14 3.6E-19 96.7 4.2 78 6-87 3-89 (246)
206 PRK13640 cbiO cobalt transport 99.5 1.5E-14 3.2E-19 98.8 4.0 79 5-87 5-94 (282)
207 PRK13549 xylose transporter AT 99.5 1.1E-14 2.3E-19 106.2 3.6 79 5-86 5-91 (506)
208 cd03244 ABCC_MRP_domain2 Domai 99.5 1.3E-14 2.8E-19 95.6 3.6 79 5-87 2-88 (221)
209 cd03215 ABC_Carb_Monos_II This 99.5 1.2E-14 2.5E-19 93.5 3.1 75 6-87 5-85 (182)
210 PRK14249 phosphate ABC transpo 99.5 3.3E-14 7.1E-19 95.4 5.4 81 5-87 4-95 (251)
211 cd03294 ABC_Pro_Gly_Bertaine T 99.5 8.2E-15 1.8E-19 99.4 2.5 77 9-86 28-111 (269)
212 COG1119 ModF ABC-type molybden 99.5 7.4E-15 1.6E-19 97.3 2.1 98 5-105 31-134 (257)
213 TIGR02769 nickel_nikE nickel i 99.5 1.6E-14 3.5E-19 97.7 3.8 81 6-87 3-98 (265)
214 PRK11288 araG L-arabinose tran 99.5 1.5E-14 3.3E-19 105.3 3.9 78 6-86 5-88 (501)
215 cd03213 ABCG_EPDR ABCG transpo 99.5 2.4E-14 5.2E-19 92.9 4.4 75 5-86 3-91 (194)
216 cd03252 ABCC_Hemolysin The ABC 99.5 1.3E-14 2.9E-19 96.5 3.2 76 7-86 2-85 (237)
217 TIGR01166 cbiO cobalt transpor 99.5 1.1E-14 2.4E-19 94.0 2.7 61 25-87 18-78 (190)
218 PRK13642 cbiO cobalt transport 99.5 3E-14 6.5E-19 97.0 4.9 79 5-87 4-91 (277)
219 PRK10938 putative molybdenum t 99.5 1.3E-14 2.8E-19 105.4 3.2 78 6-87 4-87 (490)
220 PRK14260 phosphate ABC transpo 99.5 3.6E-14 7.8E-19 95.7 5.2 82 4-87 6-98 (259)
221 TIGR00968 3a0106s01 sulfate AB 99.5 3E-14 6.5E-19 94.9 4.7 74 7-86 2-81 (237)
222 TIGR03740 galliderm_ABC gallid 99.5 3.1E-14 6.8E-19 94.0 4.7 72 7-86 2-79 (223)
223 PRK14243 phosphate transporter 99.5 3.9E-14 8.4E-19 95.8 5.2 79 6-86 11-100 (264)
224 PRK14246 phosphate ABC transpo 99.5 3.6E-14 7.7E-19 95.7 5.0 79 6-87 11-100 (257)
225 TIGR02982 heterocyst_DevA ABC 99.5 2.5E-14 5.3E-19 94.4 4.0 79 6-87 2-92 (220)
226 PRK14254 phosphate ABC transpo 99.5 4E-14 8.6E-19 96.8 5.2 79 6-86 40-129 (285)
227 PRK10419 nikE nickel transport 99.5 2E-14 4.4E-19 97.4 3.7 81 6-87 4-99 (268)
228 PRK14271 phosphate ABC transpo 99.5 2.8E-14 6E-19 97.1 4.3 80 5-87 21-111 (276)
229 PRK11819 putative ABC transpor 99.5 6.8E-14 1.5E-18 103.1 6.6 68 5-87 6-80 (556)
230 PRK14268 phosphate ABC transpo 99.5 3E-14 6.5E-19 96.0 4.4 81 5-87 12-103 (258)
231 TIGR02324 CP_lyasePhnL phospho 99.5 3.1E-14 6.6E-19 94.0 4.3 82 6-87 2-100 (224)
232 cd03253 ABCC_ATM1_transporter 99.5 1.7E-14 3.6E-19 95.9 3.1 76 7-86 2-84 (236)
233 PRK14239 phosphate transporter 99.5 4.5E-14 9.8E-19 94.7 5.2 81 5-87 5-96 (252)
234 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 1.5E-14 3.2E-19 96.3 2.8 76 7-86 2-86 (238)
235 PRK09984 phosphonate/organopho 99.5 2.6E-14 5.7E-19 96.4 4.0 83 5-87 4-96 (262)
236 COG4555 NatA ABC-type Na+ tran 99.5 1.2E-14 2.6E-19 94.2 2.2 73 6-83 2-81 (245)
237 cd03300 ABC_PotA_N PotA is an 99.5 4.4E-14 9.5E-19 93.9 4.9 75 7-87 2-82 (232)
238 PRK10070 glycine betaine trans 99.5 1.8E-14 4E-19 102.4 3.2 68 19-87 43-116 (400)
239 CHL00131 ycf16 sulfate ABC tra 99.5 6.4E-14 1.4E-18 94.0 5.4 78 6-86 8-93 (252)
240 cd03288 ABCC_SUR2 The SUR doma 99.5 3E-14 6.5E-19 96.0 3.7 78 5-86 19-104 (257)
241 PRK14258 phosphate ABC transpo 99.5 7.5E-14 1.6E-18 94.3 5.6 83 3-87 5-98 (261)
242 PRK14275 phosphate ABC transpo 99.5 4.9E-14 1.1E-18 96.4 4.7 81 5-87 39-130 (286)
243 TIGR02633 xylG D-xylose ABC tr 99.5 2.4E-14 5.2E-19 104.2 3.4 79 6-87 2-88 (500)
244 TIGR01188 drrA daunorubicin re 99.5 1.5E-14 3.3E-19 99.5 2.2 69 14-87 3-76 (302)
245 PRK14261 phosphate ABC transpo 99.5 7.3E-14 1.6E-18 93.8 5.5 81 5-87 6-97 (253)
246 cd03232 ABC_PDR_domain2 The pl 99.5 5.6E-14 1.2E-18 91.0 4.7 74 5-86 3-88 (192)
247 PRK15064 ABC transporter ATP-b 99.5 8.2E-14 1.8E-18 102.1 6.1 66 6-86 2-73 (530)
248 PRK13539 cytochrome c biogenes 99.5 6E-14 1.3E-18 91.8 4.9 74 6-86 3-82 (207)
249 PRK14255 phosphate ABC transpo 99.5 7.7E-14 1.7E-18 93.6 5.4 80 6-87 6-96 (252)
250 PRK14236 phosphate transporter 99.5 6.8E-14 1.5E-18 95.0 5.2 80 5-86 25-115 (272)
251 PRK14265 phosphate ABC transpo 99.5 6.1E-14 1.3E-18 95.4 4.9 81 5-87 20-111 (274)
252 PRK15064 ABC transporter ATP-b 99.5 8.5E-14 1.8E-18 102.0 6.0 68 5-87 319-392 (530)
253 PF13476 AAA_23: AAA domain; P 99.5 2.9E-14 6.3E-19 91.9 3.1 49 5-55 1-49 (202)
254 PRK14266 phosphate ABC transpo 99.5 7.6E-14 1.6E-18 93.6 5.2 79 6-86 4-93 (250)
255 PRK14244 phosphate ABC transpo 99.5 8.8E-14 1.9E-18 93.3 5.5 80 5-86 5-95 (251)
256 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 8.8E-14 1.9E-18 102.4 5.9 67 6-87 5-78 (552)
257 TIGR02868 CydC thiol reductant 99.5 3.6E-14 7.7E-19 103.9 3.7 77 5-86 334-417 (529)
258 cd03233 ABC_PDR_domain1 The pl 99.5 6.6E-14 1.4E-18 91.4 4.6 77 5-86 3-92 (202)
259 PRK14245 phosphate ABC transpo 99.5 7.6E-14 1.6E-18 93.6 5.0 81 5-87 3-94 (250)
260 TIGR01186 proV glycine betaine 99.5 1.6E-14 3.4E-19 101.7 1.7 70 14-87 3-81 (363)
261 PRK11144 modC molybdate transp 99.5 5.5E-14 1.2E-18 98.6 4.3 62 25-86 24-85 (352)
262 cd03298 ABC_ThiQ_thiamine_tran 99.5 6.1E-14 1.3E-18 91.9 4.2 57 25-87 24-80 (211)
263 PRK14264 phosphate ABC transpo 99.5 7E-14 1.5E-18 96.4 4.6 81 5-87 45-136 (305)
264 PRK10261 glutathione transport 99.5 4.4E-14 9.6E-19 105.3 3.7 81 6-87 314-411 (623)
265 PF11398 DUF2813: Protein of u 99.5 3.5E-13 7.5E-18 94.8 7.8 52 1-55 1-52 (373)
266 COG0444 DppD ABC-type dipeptid 99.4 1.8E-14 4E-19 98.6 1.2 98 6-103 2-114 (316)
267 COG4604 CeuD ABC-type enteroch 99.4 6.1E-14 1.3E-18 90.8 3.4 55 6-60 2-62 (252)
268 cd03299 ABC_ModC_like Archeal 99.4 1.2E-13 2.6E-18 92.0 4.9 73 7-86 2-80 (235)
269 PRK10771 thiQ thiamine transpo 99.4 1.4E-13 3E-18 91.4 5.2 75 6-86 2-80 (232)
270 COG1137 YhbG ABC-type (unclass 99.4 3.4E-15 7.4E-20 96.6 -2.5 79 5-86 4-88 (243)
271 PRK10938 putative molybdenum t 99.4 5.6E-14 1.2E-18 102.1 3.5 79 5-86 260-345 (490)
272 PRK10869 recombination and rep 99.4 5.5E-13 1.2E-17 98.3 8.7 70 2-85 1-70 (553)
273 PRK15134 microcin C ABC transp 99.4 4.7E-14 1E-18 103.4 3.0 81 5-87 5-102 (529)
274 cd03289 ABCC_CFTR2 The CFTR su 99.4 7.8E-14 1.7E-18 95.0 3.8 78 5-87 2-87 (275)
275 TIGR02142 modC_ABC molybdenum 99.4 8.1E-14 1.8E-18 97.8 3.7 63 25-87 23-85 (354)
276 PRK10982 galactose/methyl gala 99.4 4.3E-14 9.4E-19 102.7 2.3 76 9-87 2-83 (491)
277 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 2E-13 4.2E-18 100.6 5.7 66 6-86 323-394 (552)
278 COG2274 SunT ABC-type bacterio 99.4 6.7E-14 1.5E-18 105.2 3.0 78 5-86 471-556 (709)
279 TIGR01277 thiQ thiamine ABC tr 99.4 2.1E-13 4.5E-18 89.5 4.9 57 25-87 24-80 (213)
280 COG3840 ThiQ ABC-type thiamine 99.4 9.2E-14 2E-18 89.0 3.1 77 7-89 3-83 (231)
281 PRK14263 phosphate ABC transpo 99.4 2.4E-13 5.2E-18 91.9 5.3 80 6-87 9-99 (261)
282 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 4E-14 8.8E-19 93.7 1.2 56 5-60 22-83 (224)
283 COG0396 sufC Cysteine desulfur 99.4 1.5E-13 3.2E-18 90.5 3.7 81 6-89 4-93 (251)
284 TIGR00634 recN DNA repair prot 99.4 1.1E-12 2.5E-17 96.8 8.9 71 2-86 1-71 (563)
285 PRK11819 putative ABC transpor 99.4 2.7E-13 5.8E-18 100.0 5.6 66 6-86 325-396 (556)
286 PRK11147 ABC transporter ATPas 99.4 3.1E-13 6.7E-18 101.0 5.9 67 5-86 319-391 (635)
287 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 1.3E-13 2.7E-18 103.7 3.8 79 5-87 451-537 (686)
288 PRK11176 lipid transporter ATP 99.4 1.2E-13 2.7E-18 102.0 3.4 78 5-86 341-426 (582)
289 PRK10636 putative ABC transpor 99.4 3.6E-13 7.8E-18 100.7 5.8 66 6-86 313-384 (638)
290 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.2E-13 2.7E-18 104.1 3.3 78 5-86 477-562 (710)
291 PRK13541 cytochrome c biogenes 99.4 2.7E-13 5.9E-18 87.9 4.4 54 6-60 2-61 (195)
292 COG4181 Predicted ABC-type tra 99.4 1.4E-13 3E-18 87.5 2.9 82 5-86 6-97 (228)
293 PRK10261 glutathione transport 99.4 1.4E-13 3E-18 102.7 3.2 55 6-60 13-77 (623)
294 COG4152 ABC-type uncharacteriz 99.4 2.4E-13 5.2E-18 90.5 3.9 55 6-60 3-63 (300)
295 COG4674 Uncharacterized ABC-ty 99.4 5.6E-14 1.2E-18 90.8 0.8 82 4-87 4-91 (249)
296 TIGR02633 xylG D-xylose ABC tr 99.4 7.5E-14 1.6E-18 101.6 1.6 78 6-86 258-345 (500)
297 cd03214 ABC_Iron-Siderophores_ 99.4 2.4E-13 5.3E-18 87.2 3.8 53 8-60 2-60 (180)
298 PRK10636 putative ABC transpor 99.4 2.6E-13 5.6E-18 101.4 4.4 54 6-59 2-61 (638)
299 COG4148 ModC ABC-type molybdat 99.4 4.4E-13 9.5E-18 90.7 5.0 63 25-87 24-86 (352)
300 PRK10522 multidrug transporter 99.4 2.6E-13 5.7E-18 99.8 4.4 78 5-86 322-406 (547)
301 TIGR01193 bacteriocin_ABC ABC- 99.4 1.8E-13 3.9E-18 103.2 3.5 78 5-86 473-557 (708)
302 PRK11147 ABC transporter ATPas 99.4 3.2E-13 6.8E-18 100.9 4.7 53 6-58 4-62 (635)
303 TIGR02857 CydD thiol reductant 99.4 2.3E-13 4.9E-18 99.7 3.6 78 5-86 320-405 (529)
304 cd03267 ABC_NatA_like Similar 99.4 3.7E-13 8E-18 89.7 4.4 67 14-85 31-102 (236)
305 TIGR03269 met_CoM_red_A2 methy 99.4 3.2E-13 6.9E-18 98.8 4.3 82 6-87 280-375 (520)
306 cd00267 ABC_ATPase ABC (ATP-bi 99.4 2.8E-13 6E-18 85.1 3.5 56 25-84 25-80 (157)
307 COG4161 ArtP ABC-type arginine 99.4 1.1E-13 2.4E-18 87.4 1.5 81 5-85 2-90 (242)
308 PRK13549 xylose transporter AT 99.4 1.2E-13 2.6E-18 100.7 1.8 78 6-86 260-347 (506)
309 PRK09700 D-allose transporter 99.4 1.2E-13 2.7E-18 100.8 1.7 76 6-86 266-347 (510)
310 TIGR03415 ABC_choXWV_ATP choli 99.4 1.2E-13 2.6E-18 97.7 1.6 75 13-87 33-116 (382)
311 PRK13657 cyclic beta-1,2-gluca 99.4 3.4E-13 7.4E-18 99.9 4.0 78 5-86 334-418 (588)
312 COG4598 HisP ABC-type histidin 99.4 3.5E-14 7.6E-19 91.0 -1.1 83 5-87 6-103 (256)
313 PRK10790 putative multidrug tr 99.4 3.4E-13 7.4E-18 99.9 3.9 78 5-86 340-424 (592)
314 cd03297 ABC_ModC_molybdenum_tr 99.4 3.3E-13 7.2E-18 88.6 3.4 62 25-86 23-84 (214)
315 PRK11160 cysteine/glutathione 99.4 3.4E-13 7.3E-18 99.7 3.8 78 5-86 338-423 (574)
316 cd03291 ABCC_CFTR1 The CFTR su 99.4 1E-12 2.2E-17 89.8 5.9 52 5-57 39-95 (282)
317 PRK14257 phosphate ABC transpo 99.4 7.9E-13 1.7E-17 92.1 5.1 81 5-87 80-173 (329)
318 cd03234 ABCG_White The White s 99.4 3.8E-13 8.3E-18 89.0 3.3 62 18-86 21-90 (226)
319 COG1123 ATPase components of v 99.4 2.3E-13 4.9E-18 99.0 2.4 98 5-102 5-116 (539)
320 TIGR03185 DNA_S_dndD DNA sulfu 99.4 4.2E-12 9E-17 95.2 9.1 85 1-87 1-95 (650)
321 KOG0979|consensus 99.4 4.9E-12 1.1E-16 96.2 9.4 99 3-107 22-120 (1072)
322 TIGR00606 rad50 rad50. This fa 99.4 1.7E-12 3.7E-17 103.3 7.4 84 2-89 2-91 (1311)
323 TIGR00958 3a01208 Conjugate Tr 99.4 4.3E-13 9.3E-18 101.3 3.7 78 5-86 478-564 (711)
324 PRK15134 microcin C ABC transp 99.4 4.1E-13 8.8E-18 98.5 3.4 80 6-87 276-372 (529)
325 TIGR03375 type_I_sec_LssB type 99.4 4.4E-13 9.5E-18 100.9 3.6 78 5-86 463-548 (694)
326 COG0488 Uup ATPase components 99.4 1.3E-12 2.9E-17 95.6 5.9 70 5-89 3-78 (530)
327 PRK11174 cysteine/glutathione 99.4 4.4E-13 9.5E-18 99.2 3.4 77 5-86 349-432 (588)
328 TIGR02203 MsbA_lipidA lipid A 99.4 4.1E-13 9E-18 98.9 3.2 78 5-86 330-415 (571)
329 COG4525 TauB ABC-type taurine 99.3 7.4E-13 1.6E-17 85.8 3.6 73 5-86 3-83 (259)
330 PLN03073 ABC transporter F fam 99.3 2.2E-12 4.8E-17 97.5 6.6 67 5-86 508-581 (718)
331 TIGR02770 nickel_nikD nickel i 99.3 6E-13 1.3E-17 88.3 3.1 57 25-87 12-72 (230)
332 TIGR01192 chvA glucan exporter 99.3 6.5E-13 1.4E-17 98.5 3.6 78 5-86 334-418 (585)
333 COG1132 MdlB ABC-type multidru 99.3 5.1E-13 1.1E-17 98.6 3.0 78 5-86 328-412 (567)
334 TIGR01842 type_I_sec_PrtD type 99.3 7.2E-13 1.6E-17 97.4 3.7 78 5-86 316-401 (544)
335 KOG0057|consensus 99.3 1.1E-12 2.3E-17 95.1 4.5 77 5-86 351-434 (591)
336 TIGR02204 MsbA_rel ABC transpo 99.3 5.9E-13 1.3E-17 98.3 3.2 78 5-86 337-423 (576)
337 cd03222 ABC_RNaseL_inhibitor T 99.3 9.2E-13 2E-17 84.5 3.7 48 12-59 8-59 (177)
338 COG4988 CydD ABC-type transpor 99.3 6.9E-13 1.5E-17 96.5 3.2 77 6-86 321-404 (559)
339 COG4133 CcmA ABC-type transpor 99.3 7.7E-13 1.7E-17 84.9 2.7 36 25-60 28-63 (209)
340 COG4619 ABC-type uncharacteriz 99.3 5.4E-14 1.2E-18 89.1 -2.6 67 16-86 15-86 (223)
341 TIGR01194 cyc_pep_trnsptr cycl 99.3 8.1E-13 1.7E-17 97.4 3.1 78 5-86 337-425 (555)
342 PRK10789 putative multidrug tr 99.3 9.6E-13 2.1E-17 97.3 3.3 78 5-86 313-398 (569)
343 TIGR03269 met_CoM_red_A2 methy 99.3 1.4E-12 3.1E-17 95.4 4.1 54 6-59 1-62 (520)
344 PF00005 ABC_tran: ABC transpo 99.3 2.6E-13 5.6E-18 83.2 -0.5 58 25-86 11-68 (137)
345 PRK10535 macrolide transporter 99.3 1.1E-12 2.4E-17 98.2 2.8 80 5-86 4-95 (648)
346 TIGR01846 type_I_sec_HlyB type 99.3 1.3E-12 2.8E-17 98.4 3.0 78 5-86 455-540 (694)
347 TIGR01257 rim_protein retinal- 99.3 2.4E-12 5.1E-17 105.2 4.6 78 5-87 1937-2022(2272)
348 PTZ00265 multidrug resistance 99.3 1.7E-12 3.7E-17 103.9 3.6 79 5-86 382-469 (1466)
349 TIGR01257 rim_protein retinal- 99.3 2.3E-12 4.9E-17 105.3 4.3 77 5-86 928-1012(2272)
350 PRK10982 galactose/methyl gala 99.3 9.1E-13 2E-17 95.9 1.0 76 6-86 251-332 (491)
351 TIGR00954 3a01203 Peroxysomal 99.3 6.8E-12 1.5E-16 94.2 5.7 67 5-86 451-524 (659)
352 TIGR03771 anch_rpt_ABC anchore 99.3 2.2E-12 4.8E-17 85.3 2.6 54 25-87 6-59 (223)
353 PLN03130 ABC transporter C fam 99.3 3.1E-12 6.6E-17 103.3 3.3 78 5-86 1237-1322(1622)
354 COG1134 TagH ABC-type polysacc 99.3 3.2E-12 6.9E-17 84.8 2.7 44 18-61 41-89 (249)
355 COG4172 ABC-type uncharacteriz 99.3 2.7E-12 5.9E-17 90.7 2.5 87 18-106 301-392 (534)
356 PRK11288 araG L-arabinose tran 99.3 1.4E-12 3E-17 95.1 1.1 60 25-87 279-338 (501)
357 PRK13409 putative ATPase RIL; 99.3 1.2E-11 2.6E-16 91.8 6.0 64 6-87 341-410 (590)
358 cd03237 ABC_RNaseL_inhibitor_d 99.2 6.8E-12 1.5E-16 84.2 4.2 33 25-57 25-57 (246)
359 PLN03232 ABC transporter C fam 99.2 3.4E-12 7.5E-17 102.5 3.0 78 5-86 1234-1319(1495)
360 PRK10762 D-ribose transporter 99.2 3.1E-12 6.8E-17 93.3 2.4 59 25-86 278-336 (501)
361 PRK13546 teichoic acids export 99.2 7.7E-12 1.7E-16 84.8 4.2 36 25-60 50-85 (264)
362 PRK03695 vitamin B12-transport 99.2 3.8E-12 8.3E-17 85.4 2.7 58 25-87 22-79 (248)
363 PLN03211 ABC transporter G-25; 99.2 4.1E-12 8.9E-17 95.3 2.7 68 12-87 76-150 (659)
364 PTZ00243 ABC transporter; Prov 99.2 5.9E-12 1.3E-16 101.4 3.7 78 5-86 1308-1393(1560)
365 TIGR01184 ntrCD nitrate transp 99.2 3.5E-12 7.6E-17 84.7 2.1 36 25-60 11-46 (230)
366 PRK15177 Vi polysaccharide exp 99.2 5.7E-12 1.2E-16 82.9 2.9 33 25-57 13-45 (213)
367 PRK04863 mukB cell division pr 99.2 2.9E-11 6.3E-16 96.7 7.3 56 2-59 6-61 (1486)
368 PRK13545 tagH teichoic acids e 99.2 1.1E-11 2.3E-16 90.6 4.4 55 6-60 22-85 (549)
369 cd03236 ABC_RNaseL_inhibitor_d 99.2 6.6E-12 1.4E-16 84.7 3.1 46 12-57 8-58 (255)
370 KOG0056|consensus 99.2 8.7E-12 1.9E-16 90.1 3.3 78 5-86 537-621 (790)
371 KOG0055|consensus 99.2 8E-12 1.7E-16 97.3 2.9 78 5-86 350-436 (1228)
372 TIGR00957 MRP_assoc_pro multi 99.2 7.7E-12 1.7E-16 100.7 2.9 78 5-86 1284-1369(1522)
373 KOG0058|consensus 99.2 1.4E-11 2.9E-16 91.7 3.6 78 5-86 465-551 (716)
374 PTZ00265 multidrug resistance 99.2 1.2E-11 2.7E-16 99.1 3.2 47 5-51 1165-1220(1466)
375 PLN03073 ABC transporter F fam 99.2 2.5E-11 5.4E-16 91.9 4.6 54 4-57 176-238 (718)
376 PRK15439 autoinducer 2 ABC tra 99.2 8.3E-12 1.8E-16 91.3 1.8 59 25-86 289-347 (510)
377 COG4107 PhnK ABC-type phosphon 99.2 1.3E-11 2.9E-16 78.9 2.4 93 5-97 6-109 (258)
378 TIGR01271 CFTR_protein cystic 99.2 3.2E-11 6.8E-16 97.1 4.6 77 5-86 1217-1301(1490)
379 TIGR00956 3a01205 Pleiotropic 99.1 2.9E-11 6.3E-16 96.7 3.9 74 6-87 760-846 (1394)
380 COG3950 Predicted ATP-binding 99.1 1.9E-11 4.1E-16 84.8 2.4 51 1-53 1-52 (440)
381 COG0488 Uup ATPase components 99.1 9.9E-11 2.1E-15 85.9 6.0 53 5-57 321-380 (530)
382 COG1101 PhnK ABC-type uncharac 99.1 3.8E-12 8.2E-17 83.4 -1.8 63 25-91 32-94 (263)
383 COG4987 CydC ABC-type transpor 99.1 2E-11 4.2E-16 88.5 1.6 56 5-60 336-399 (573)
384 COG3593 Predicted ATP-dependen 99.1 2E-10 4.3E-15 84.6 6.7 50 1-52 1-50 (581)
385 COG4586 ABC-type uncharacteriz 99.1 2.5E-11 5.3E-16 82.0 1.6 36 25-60 50-85 (325)
386 COG4608 AppF ABC-type oligopep 99.1 9.7E-11 2.1E-15 78.9 4.5 57 5-61 4-75 (268)
387 COG4136 ABC-type uncharacteriz 99.1 1.3E-10 2.9E-15 72.8 4.6 56 25-86 28-86 (213)
388 PF13175 AAA_15: AAA ATPase do 99.1 1E-10 2.2E-15 82.8 4.5 48 3-51 1-48 (415)
389 TIGR00957 MRP_assoc_pro multi 99.1 1.3E-10 2.8E-15 93.8 5.5 53 5-57 636-696 (1522)
390 COG1106 Predicted ATPases [Gen 99.1 8.5E-11 1.8E-15 82.6 3.3 47 2-50 1-47 (371)
391 TIGR01187 potA spermidine/putr 99.1 4.1E-11 9E-16 83.4 1.6 52 30-87 1-52 (325)
392 PRK13409 putative ATPase RIL; 99.1 1.1E-10 2.3E-15 86.9 3.8 46 12-57 81-131 (590)
393 COG4175 ProV ABC-type proline/ 99.1 1.5E-11 3.3E-16 84.5 -1.0 62 25-86 54-115 (386)
394 TIGR01271 CFTR_protein cystic 99.0 2.4E-10 5.2E-15 92.1 4.4 45 25-86 452-496 (1490)
395 KOG0055|consensus 99.0 1.8E-10 4E-15 89.9 3.5 78 5-86 987-1073(1228)
396 COG4637 Predicted ATPase [Gene 99.0 7.3E-11 1.6E-15 81.1 1.1 53 1-56 1-53 (373)
397 KOG0054|consensus 99.0 2.1E-10 4.6E-15 90.9 3.3 78 5-86 1138-1223(1381)
398 COG4615 PvdE ABC-type sideroph 99.0 3.4E-10 7.4E-15 80.1 4.0 57 4-60 321-384 (546)
399 COG4618 ArpD ABC-type protease 99.0 2.1E-10 4.6E-15 82.9 2.6 78 5-86 334-419 (580)
400 PLN03140 ABC transporter G fam 99.0 2.5E-10 5.4E-15 91.8 3.1 63 17-86 178-248 (1470)
401 PLN03130 ABC transporter C fam 99.0 8.9E-10 1.9E-14 89.4 6.1 65 5-86 614-688 (1622)
402 TIGR00955 3a01204 The Eye Pigm 99.0 1.3E-10 2.8E-15 86.8 1.2 64 17-87 38-109 (617)
403 COG4172 ABC-type uncharacteriz 99.0 1.8E-10 3.9E-15 81.6 1.5 96 5-102 6-118 (534)
404 cd03227 ABC_Class2 ABC-type Cl 99.0 4.8E-10 1E-14 70.9 3.3 52 6-57 2-53 (162)
405 PLN03140 ABC transporter G fam 99.0 7.4E-10 1.6E-14 89.1 4.5 63 18-87 894-963 (1470)
406 TIGR00956 3a01205 Pleiotropic 98.9 5.7E-10 1.2E-14 89.5 3.6 64 18-86 75-147 (1394)
407 PLN03232 ABC transporter C fam 98.9 1.2E-09 2.6E-14 88.2 5.4 66 5-86 614-688 (1495)
408 KOG0250|consensus 98.9 4.6E-09 1E-13 81.0 8.0 79 2-86 41-119 (1074)
409 cd03238 ABC_UvrA The excision 98.9 4.9E-10 1.1E-14 71.9 2.3 29 25-57 21-49 (176)
410 PTZ00243 ABC transporter; Prov 98.9 1E-09 2.2E-14 88.8 4.5 55 16-87 672-731 (1560)
411 cd00820 PEPCK_HprK Phosphoenol 98.9 1.3E-09 2.8E-14 64.5 3.4 22 25-46 15-36 (107)
412 cd01130 VirB11-like_ATPase Typ 98.9 4.6E-09 9.9E-14 67.8 4.8 33 25-57 25-57 (186)
413 COG0497 RecN ATPase involved i 98.8 3.3E-08 7.1E-13 72.6 8.8 71 2-86 1-71 (557)
414 cd03283 ABC_MutS-like MutS-lik 98.8 5.2E-09 1.1E-13 68.3 2.9 25 25-49 25-49 (199)
415 TIGR02680 conserved hypothetic 98.8 3.5E-08 7.6E-13 79.3 7.9 49 2-52 3-52 (1353)
416 KOG0059|consensus 98.7 4.1E-09 8.9E-14 81.6 2.3 80 4-86 563-649 (885)
417 KOG0061|consensus 98.7 6.6E-09 1.4E-13 77.7 3.2 63 17-86 43-113 (613)
418 KOG0927|consensus 98.7 7.3E-09 1.6E-13 75.5 3.1 33 25-57 416-448 (614)
419 KOG0962|consensus 98.7 9.6E-09 2.1E-13 80.7 3.9 89 3-95 4-96 (1294)
420 KOG0062|consensus 98.7 6.7E-09 1.4E-13 75.3 2.8 43 5-47 80-128 (582)
421 COG4138 BtuD ABC-type cobalami 98.7 1E-08 2.2E-13 65.9 2.3 35 25-60 25-59 (248)
422 COG3910 Predicted ATPase [Gene 98.7 1.9E-08 4.1E-13 65.1 2.8 29 22-50 34-62 (233)
423 COG5265 ATM1 ABC-type transpor 98.7 1.3E-08 2.7E-13 72.6 2.2 77 6-86 263-346 (497)
424 COG4778 PhnL ABC-type phosphon 98.6 2.5E-08 5.4E-13 63.8 3.0 34 25-58 37-70 (235)
425 KOG2355|consensus 98.6 3.7E-08 8E-13 64.8 3.8 53 5-57 13-72 (291)
426 PRK10078 ribose 1,5-bisphospho 98.6 2.1E-08 4.5E-13 64.7 2.3 27 25-51 2-28 (186)
427 COG4178 ABC-type uncharacteriz 98.6 5.6E-08 1.2E-12 72.1 4.8 53 5-57 392-451 (604)
428 PF13304 AAA_21: AAA domain; P 98.6 7.1E-09 1.5E-13 68.0 0.0 23 27-49 1-23 (303)
429 cd03243 ABC_MutS_homologs The 98.6 3.5E-08 7.7E-13 64.4 2.6 25 25-49 29-53 (202)
430 KOG0927|consensus 98.6 6.6E-08 1.4E-12 70.7 4.1 52 5-56 75-132 (614)
431 TIGR03238 dnd_assoc_3 dnd syst 98.6 1.9E-08 4.1E-13 72.9 1.3 34 25-60 32-66 (504)
432 PRK09825 idnK D-gluconate kina 98.5 5.5E-08 1.2E-12 62.4 2.7 27 25-51 3-29 (176)
433 TIGR02858 spore_III_AA stage I 98.5 5.3E-08 1.1E-12 66.4 2.4 35 26-60 112-146 (270)
434 TIGR00235 udk uridine kinase. 98.5 5.4E-08 1.2E-12 63.7 2.2 27 25-51 6-32 (207)
435 cd03270 ABC_UvrA_I The excisio 98.5 5E-08 1.1E-12 64.8 1.9 18 25-42 21-38 (226)
436 PRK09270 nucleoside triphospha 98.5 8.1E-08 1.8E-12 63.9 2.6 31 25-55 33-63 (229)
437 COG1245 Predicted ATPase, RNas 98.5 1.3E-07 2.9E-12 68.2 3.6 31 25-55 367-397 (591)
438 TIGR02322 phosphon_PhnN phosph 98.5 9.7E-08 2.1E-12 61.0 2.6 27 25-51 1-27 (179)
439 PRK06002 fliI flagellum-specif 98.5 1.9E-07 4.2E-12 67.4 4.2 62 25-87 165-230 (450)
440 TIGR00554 panK_bact pantothena 98.4 1.7E-07 3.6E-12 64.5 2.8 26 25-50 62-87 (290)
441 KOG0060|consensus 98.4 3.4E-07 7.3E-12 67.5 4.1 33 25-57 461-493 (659)
442 cd02025 PanK Pantothenate kina 98.4 1.7E-07 3.7E-12 62.1 2.4 25 27-51 1-25 (220)
443 KOG0065|consensus 98.4 8E-08 1.7E-12 76.0 1.0 66 17-89 804-876 (1391)
444 cd03280 ABC_MutS2 MutS2 homolo 98.4 1.6E-07 3.4E-12 61.2 2.2 21 26-46 29-49 (200)
445 TIGR03263 guanyl_kin guanylate 98.4 1.9E-07 4.1E-12 59.6 2.2 26 25-50 1-26 (180)
446 cd02026 PRK Phosphoribulokinas 98.4 2.5E-07 5.4E-12 63.2 2.8 29 27-55 1-29 (273)
447 PF04310 MukB: MukB N-terminal 98.4 1.6E-07 3.4E-12 61.1 1.7 54 2-57 6-59 (227)
448 COG4170 SapD ABC-type antimicr 98.4 1.8E-07 4E-12 61.8 1.9 68 25-94 33-106 (330)
449 cd02023 UMPK Uridine monophosp 98.4 2.6E-07 5.7E-12 60.0 2.5 23 27-49 1-23 (198)
450 PRK00300 gmk guanylate kinase; 98.3 3.4E-07 7.4E-12 59.6 2.6 26 25-50 5-30 (205)
451 KOG0054|consensus 98.3 9E-07 2E-11 70.9 5.2 53 5-57 518-579 (1381)
452 KOG0066|consensus 98.3 4.5E-07 9.8E-12 65.6 2.9 33 25-57 613-645 (807)
453 cd03282 ABC_MSH4_euk MutS4 hom 98.3 6E-07 1.3E-11 58.9 2.7 25 25-49 29-53 (204)
454 PRK05480 uridine/cytidine kina 98.3 5.9E-07 1.3E-11 58.8 2.4 26 25-50 6-31 (209)
455 smart00382 AAA ATPases associa 98.3 7.3E-07 1.6E-11 53.4 2.6 29 25-53 2-30 (148)
456 TIGR02788 VirB11 P-type DNA tr 98.2 6.7E-07 1.5E-11 62.0 2.5 33 25-57 144-176 (308)
457 COG4938 Uncharacterized conser 98.2 1.3E-06 2.8E-11 59.8 3.7 46 2-50 1-46 (374)
458 cd01131 PilT Pilus retraction 98.2 9E-07 1.9E-11 57.7 2.9 27 26-52 2-28 (198)
459 cd03281 ABC_MSH5_euk MutS5 hom 98.2 7.7E-07 1.7E-11 58.7 2.4 22 26-47 30-51 (213)
460 KOG0064|consensus 98.2 7.1E-07 1.5E-11 65.6 2.4 32 25-56 508-539 (728)
461 PF03193 DUF258: Protein of un 98.2 7.7E-07 1.7E-11 56.3 2.3 33 25-57 35-67 (161)
462 PRK10416 signal recognition pa 98.2 8E-07 1.7E-11 61.9 2.5 33 25-57 114-146 (318)
463 cd03284 ABC_MutS1 MutS1 homolo 98.2 8.3E-07 1.8E-11 58.7 2.5 25 25-49 30-54 (216)
464 PLN02796 D-glycerate 3-kinase 98.2 9.3E-07 2E-11 62.0 2.6 26 27-52 102-127 (347)
465 TIGR02524 dot_icm_DotB Dot/Icm 98.2 1.1E-06 2.4E-11 62.1 2.7 26 25-50 134-159 (358)
466 COG4717 Uncharacterized conser 98.2 1.7E-06 3.7E-11 66.1 3.6 48 1-50 1-49 (984)
467 cd00071 GMPK Guanosine monopho 98.2 1.3E-06 2.9E-11 53.8 2.5 26 27-52 1-26 (137)
468 TIGR01360 aden_kin_iso1 adenyl 98.2 7.2E-07 1.6E-11 57.1 1.2 21 26-46 4-24 (188)
469 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.3E-06 2.8E-11 60.0 2.4 33 25-57 161-193 (287)
470 cd04155 Arl3 Arl3 subfamily. 98.1 1.4E-06 2.9E-11 54.9 2.3 23 26-48 15-37 (173)
471 PRK00098 GTPase RsgA; Reviewed 98.1 1.3E-06 2.8E-11 60.3 2.4 34 24-57 163-196 (298)
472 PF13207 AAA_17: AAA domain; P 98.1 1.5E-06 3.1E-11 52.0 2.3 23 27-49 1-23 (121)
473 PRK08149 ATP synthase SpaL; Va 98.1 2.3E-06 5E-11 61.7 3.6 29 25-53 151-179 (428)
474 PRK07721 fliI flagellum-specif 98.1 2.7E-06 5.9E-11 61.6 3.8 61 25-85 158-222 (438)
475 PRK07960 fliI flagellum-specif 98.1 3.3E-06 7.1E-11 61.2 4.0 65 25-91 175-243 (455)
476 cd04104 p47_IIGP_like p47 (47- 98.1 1.8E-06 3.9E-11 56.1 2.4 27 28-54 4-30 (197)
477 PRK01889 GTPase RsgA; Reviewed 98.1 3E-06 6.5E-11 59.9 3.7 34 25-58 195-228 (356)
478 cd04159 Arl10_like Arl10-like 98.1 1.5E-06 3.2E-11 53.4 1.8 21 28-48 2-22 (159)
479 PRK14721 flhF flagellar biosyn 98.1 2.1E-06 4.4E-11 61.9 2.5 24 25-48 191-214 (420)
480 TIGR00101 ureG urease accessor 98.1 2.6E-06 5.6E-11 55.7 2.8 26 27-52 3-28 (199)
481 cd03287 ABC_MSH3_euk MutS3 hom 98.1 2.3E-06 4.9E-11 56.9 2.5 31 25-55 31-62 (222)
482 smart00534 MUTSac ATPase domai 98.1 2.6E-06 5.5E-11 55.0 2.5 22 27-48 1-22 (185)
483 PRK09862 putative ATP-dependen 98.1 2E-06 4.3E-11 63.2 1.9 33 25-57 210-242 (506)
484 PRK06995 flhF flagellar biosyn 98.1 2.4E-06 5.3E-11 62.4 2.3 28 25-52 256-283 (484)
485 PLN03046 D-glycerate 3-kinase; 98.1 2.7E-06 5.9E-11 61.2 2.5 27 26-52 213-239 (460)
486 smart00053 DYNc Dynamin, GTPas 98.0 3.3E-06 7.2E-11 56.7 2.7 26 24-49 25-50 (240)
487 KOG0066|consensus 98.0 4.1E-06 8.9E-11 60.8 3.2 43 5-47 264-312 (807)
488 PRK14738 gmk guanylate kinase; 98.0 3E-06 6.5E-11 55.6 2.3 24 25-48 13-36 (206)
489 cd03271 ABC_UvrA_II The excisi 98.0 4.4E-06 9.6E-11 56.8 3.2 21 25-45 21-41 (261)
490 cd01876 YihA_EngB The YihA (En 98.0 2.9E-06 6.2E-11 52.6 1.9 19 28-46 2-20 (170)
491 PRK10751 molybdopterin-guanine 98.0 3.3E-06 7.1E-11 54.1 2.2 26 26-51 7-32 (173)
492 PRK03846 adenylylsulfate kinas 98.0 3.7E-06 8E-11 54.7 2.4 27 25-51 24-50 (198)
493 PRK07261 topology modulation p 98.0 4.4E-06 9.6E-11 53.3 2.7 24 27-50 2-25 (171)
494 cd01120 RecA-like_NTPases RecA 98.0 4.5E-06 9.7E-11 51.7 2.6 30 27-56 1-30 (165)
495 COG1245 Predicted ATPase, RNas 98.0 5.6E-06 1.2E-10 60.1 3.4 33 25-57 100-132 (591)
496 PF01926 MMR_HSR1: 50S ribosom 98.0 3.8E-06 8.1E-11 49.9 2.2 21 28-48 2-22 (116)
497 PRK08533 flagellar accessory p 98.0 1.3E-05 2.9E-10 53.4 4.8 28 25-52 24-52 (230)
498 PRK07429 phosphoribulokinase; 98.0 4.4E-06 9.5E-11 58.5 2.6 27 27-53 10-36 (327)
499 PLN02318 phosphoribulokinase/u 98.0 3.9E-06 8.4E-11 62.7 2.4 31 26-57 66-96 (656)
500 PF13671 AAA_33: AAA domain; P 98.0 5E-06 1.1E-10 50.9 2.5 24 27-50 1-24 (143)
No 1
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=1.7e-19 Score=121.03 Aligned_cols=87 Identities=45% Similarity=0.675 Sum_probs=66.7
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCc-ccccccchhhhhhhcCCCCceeeEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+|++|++.||++|.+...+.+|++++++|+||||||||||++||++++.+.. +.++..+ ..+++..........++|
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~-~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASN-LQDLIYKRGQAGITKASV 79 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccC-HHHHhhcCCCCCCcEEEE
Confidence 89999999999999988755578899999999999999999999999998753 4554322 223444333223446799
Q ss_pred EEEEecCCC
Q psy16868 80 EIVFDNTDH 88 (109)
Q Consensus 80 ~~~fq~~~~ 88 (109)
+++||+++.
T Consensus 80 ~~~fq~~~~ 88 (251)
T cd03273 80 TIVFDNSDK 88 (251)
T ss_pred EEEEEcCCc
Confidence 999999643
No 2
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=1.3e-19 Score=120.92 Aligned_cols=88 Identities=76% Similarity=1.207 Sum_probs=66.9
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
|++|+++||++|.+..++.++++++++|+||||||||||++||++++....+..+ .+...+++..+.......+.|+++
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~-~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLR-EEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhh-hhhHHHhEeCCCCCCCceEEEEEE
Confidence 4689999999999888787899999999999999999999999999875555433 221234455544433456889999
Q ss_pred EecCCCCCc
Q psy16868 83 FDNTDHRVP 91 (109)
Q Consensus 83 fq~~~~~~~ 91 (109)
|++++.+++
T Consensus 80 ~~~~~~~~~ 88 (243)
T cd03272 80 FDNSDNRFP 88 (243)
T ss_pred EEcCCCccC
Confidence 998766544
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.77 E-value=4.1e-19 Score=118.97 Aligned_cols=86 Identities=14% Similarity=0.209 Sum_probs=68.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.++++|+ .+|....++++++ |++++|+|||||||||||++|++++.|..|.+.+++.. ..........+.
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~----i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKD----IASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCc----hhhcCHHHHhhh
Confidence 3788898 7898887787776 89999999999999999999999999999999865532 122333445678
Q ss_pred EEEEEecCCCCCceeE
Q psy16868 79 VEIVFDNTDHRVPGFI 94 (109)
Q Consensus 79 i~~~fq~~~~~~~~~~ 94 (109)
+++++|.+...++..+
T Consensus 78 ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 78 LAYVPQSPSAPFGLTV 93 (258)
T ss_pred EEEeccCCCCCCCcEE
Confidence 9999999866655544
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.3e-19 Score=117.91 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=65.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|++.+++++++ |++++|+||+||||||||++|+++..+++|.+.+++.... ........++++
T Consensus 3 i~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~---~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVG---DKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEecc---chhhHHHHHHhc
Confidence 789999 8999999888887 8999999999999999999999999999999986653111 111334457889
Q ss_pred EEEEecCCC
Q psy16868 80 EIVFDNTDH 88 (109)
Q Consensus 80 ~~~fq~~~~ 88 (109)
+||||+.+-
T Consensus 80 GmVFQ~fnL 88 (240)
T COG1126 80 GMVFQQFNL 88 (240)
T ss_pred Ceecccccc
Confidence 999998743
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.1e-18 Score=120.84 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=61.7
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|++..++++++ |++++|+|||||||||||++|+|+..+++|.+.+++.. + .+ .++.++.
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~---v-t~--l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRD---V-TD--LPPEKRG 76 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE---C-CC--CChhHCC
Confidence 5899999 8898863466665 89999999999999999999999999999999866531 1 22 2334788
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+||||+.
T Consensus 77 iamVFQ~y 84 (338)
T COG3839 77 IAMVFQNY 84 (338)
T ss_pred EEEEeCCc
Confidence 99999985
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.75 E-value=8.9e-18 Score=131.59 Aligned_cols=88 Identities=41% Similarity=0.701 Sum_probs=72.1
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCc-ccccccchhhhhhhcCCCC--ceeeE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSDSRQALLHEGTGP--RVVNA 77 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~ 77 (109)
|+|++|.+.||++|.+...+ +|++++++|+||||||||++++||+|++...+ ..++ .+...++++.+... +...+
T Consensus 1 m~lk~i~l~gFKSF~~~~~i-~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lR-a~~~~DlIf~g~~~r~~~~~A 78 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEI-NFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLR-ASKMSDLIFAGSGNRKPANYA 78 (1163)
T ss_pred CeeeEEEEECcccCCCCeee-ecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhh-ccCCcceeeCCCCCCCCCCce
Confidence 89999999999999996645 99999999999999999999999999998663 3444 55567788777653 23358
Q ss_pred EEEEEEecCCCCC
Q psy16868 78 YVEIVFDNTDHRV 90 (109)
Q Consensus 78 ~i~~~fq~~~~~~ 90 (109)
.|.++|.+.+...
T Consensus 79 ~V~l~fdN~d~~~ 91 (1163)
T COG1196 79 EVELTFDNSDNTL 91 (1163)
T ss_pred EEEEEEeCCCCcC
Confidence 9999999988543
No 7
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.1e-18 Score=115.12 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=75.2
Q ss_pred EEEEece-eecCCCe----eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868 5 QVIIHGF-KSYKEQT----VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~----~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
.++++|+ +.|+... ++++++ |+..+|+|++|||||||.++|+|+..|+.|.+.+.+... ......+.
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~---~~~~~~~~ 79 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL---APKKRAKA 79 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc---Cccccchh
Confidence 3788888 7787766 666665 899999999999999999999999999999998665311 11111223
Q ss_pred eeEEEEEEEecCCCCCceeEEEeecceeee
Q psy16868 75 VNAYVEIVFDNTDHRVPGFIRCRSTSVDLY 104 (109)
Q Consensus 75 ~~~~i~~~fq~~~~~~~~~~~~~~~~~~~~ 104 (109)
..+.|.||||+|...+.+++..++...+..
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhh
Confidence 467899999999999988887776665544
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.1e-18 Score=115.19 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=63.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ ..|....++++++ |++++|+||||||||||+++|.|++.|..|.+.+.+. ..........
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~-------~~~~~~~~~~ 76 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK-------PVRKRRKRLR 76 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccc-------cccccccCCe
Confidence 5889999 7888545777776 8899999999999999999999999999999873332 1111111468
Q ss_pred EEEEEecC--CCCCceeE
Q psy16868 79 VEIVFDNT--DHRVPGFI 94 (109)
Q Consensus 79 i~~~fq~~--~~~~~~~~ 94 (109)
|+||+|.. +..+|.++
T Consensus 77 IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 77 IGYVPQKSSVDRSFPITV 94 (254)
T ss_pred EEEcCcccccCCCCCcCH
Confidence 99999965 55566544
No 9
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=3e-17 Score=110.09 Aligned_cols=87 Identities=37% Similarity=0.575 Sum_probs=62.4
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--CceeeEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PRVVNAYVE 80 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~ 80 (109)
|++|++.||++|.+...+ ++...+++|+||||||||||++||++++.+..+.++ .....+++..+.. .....+.|.
T Consensus 1 i~~i~l~nf~~~~~~~~~-~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r-~~~~~~~i~~~~~~~~~~~~~~v~ 78 (247)
T cd03275 1 LKRLELENFKSYKGRHVI-GPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLR-SKNLKDLIYRARVGKPDSNSAYVT 78 (247)
T ss_pred CcEEEEECccccCCCeee-cCCCCeEEEECCCCCCHHHHHHHHHHHhCCCccccc-ccchhhhcccCccccCCCceEEEE
Confidence 468999999999876556 555679999999999999999999999987666655 2222334433321 123367888
Q ss_pred EEEecCCCCCc
Q psy16868 81 IVFDNTDHRVP 91 (109)
Q Consensus 81 ~~fq~~~~~~~ 91 (109)
++|+..+..+.
T Consensus 79 ~~f~~~~~~~~ 89 (247)
T cd03275 79 AVYEDDDGEEK 89 (247)
T ss_pred EEEEcCCCcEE
Confidence 88987655543
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.73 E-value=4.1e-18 Score=118.50 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=64.2
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
..++++|+ +.|++..++++++ |++++|+|||||||||+|++|+|+..|++|.|.+++... .+ .++.++
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i----~~--lpp~kR 77 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI----TD--VPPEKR 77 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC----CC--CChhhc
Confidence 46899999 8999887787776 899999999999999999999999999999998666421 22 334478
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++|||+-
T Consensus 78 ~ig~VFQ~Y 86 (352)
T COG3842 78 PIGMVFQSY 86 (352)
T ss_pred ccceeecCc
Confidence 899999984
No 11
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.73 E-value=1.9e-17 Score=107.76 Aligned_cols=87 Identities=34% Similarity=0.582 Sum_probs=59.8
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--CceeeEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PRVVNAYVE 80 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~ 80 (109)
|+++++.||++|++...+ ++.+++++|+||||||||||+++|++++.+..+.........+++..+.. .....+.|+
T Consensus 1 ~~~~~~~~fr~~~~~~~l-~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (197)
T cd03278 1 LKKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT 79 (197)
T ss_pred CcEEEEeCCcCcCCCeee-ecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE
Confidence 468999999999444335 56655999999999999999999999997653321111112233333322 122357899
Q ss_pred EEEecCCCCC
Q psy16868 81 IVFDNTDHRV 90 (109)
Q Consensus 81 ~~fq~~~~~~ 90 (109)
++||++..++
T Consensus 80 ~vfq~~~~~~ 89 (197)
T cd03278 80 LTFDNSDGRY 89 (197)
T ss_pred EEEEcCCCce
Confidence 9999998774
No 12
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.71 E-value=1.2e-16 Score=105.20 Aligned_cols=87 Identities=38% Similarity=0.622 Sum_probs=58.6
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcc-cccccchhhhhhhc-CCCCceeeEEE
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHSDSRQALLHE-GTGPRVVNAYV 79 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i 79 (109)
+|.+|++.||++|.+.....++++++++|+||||+||||+++||.+++....+ .++ .....+++.. ........+.|
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r-~~~~~~lI~~~~~~~~~~~a~V 79 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR-GSKLKDLINKSGSDQDSKSAEV 79 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT--SSGGTCB--BTTB---SEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHccccccc-cccccccccccccccccccccc
Confidence 58899999999996333233888899999999999999999999998874332 222 2223334444 33334457889
Q ss_pred EEEEecCCCC
Q psy16868 80 EIVFDNTDHR 89 (109)
Q Consensus 80 ~~~fq~~~~~ 89 (109)
...|+..+..
T Consensus 80 ~~~~~~~~~~ 89 (220)
T PF02463_consen 80 ELIFDNSDEE 89 (220)
T ss_dssp EEEEECTTEE
T ss_pred cccccccccc
Confidence 9999877654
No 13
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.71 E-value=4.3e-17 Score=107.17 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=60.9
Q ss_pred CeeeEEEEeceeecCCCeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCc-ccccccchhhhhhhcCCCCcee
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
|++.+|+++||++|.+...+ +|+ +++++|+||||||||||+++|++++++.. +... .....+.+.. ...
T Consensus 1 m~~~~i~l~nf~~y~~~~~i-~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~-~~~~~~~~~~----~~~ 74 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVI-DFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGR-QENLRSVFAP----GED 74 (213)
T ss_pred CEEEEEEEECCcCcCCceEE-eCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCcccccc-chhHHHHhcC----CCc
Confidence 89999999999998776656 565 45999999999999999999998876333 2222 1111122222 234
Q ss_pred eEEEEEEEecCCCCCce
Q psy16868 76 NAYVEIVFDNTDHRVPG 92 (109)
Q Consensus 76 ~~~i~~~fq~~~~~~~~ 92 (109)
...|+++||+++..+..
T Consensus 75 ~~~v~~~f~~~~~~~~~ 91 (213)
T cd03279 75 TAEVSFTFQLGGKKYRV 91 (213)
T ss_pred cEEEEEEEEECCeEEEE
Confidence 78899999998665543
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=9.8e-18 Score=110.38 Aligned_cols=84 Identities=14% Similarity=0.287 Sum_probs=64.7
Q ss_pred EEEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ +.| ...+++++++ |++++|+|++||||||||++|.++..++.|.+.+.+. ...-..+...+..++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~-~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV-QITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEeccc-chhccchHHHHHHHH
Confidence 3789999 889 6666677665 8999999999999999999999999999999885552 111222333445578
Q ss_pred EEEEEEecCCCC
Q psy16868 78 YVEIVFDNTDHR 89 (109)
Q Consensus 78 ~i~~~fq~~~~~ 89 (109)
.|+|+||+++--
T Consensus 82 ~iGmIfQ~~nLv 93 (258)
T COG3638 82 DIGMIFQQFNLV 93 (258)
T ss_pred hceeEeccCCcc
Confidence 899999997543
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.6e-17 Score=112.94 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=59.7
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|. +.|....++++++ |++++|.|||||||||||++|+|++.|+.|.|.++++ ...+-.......++|
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~---~l~D~~~~~~~~R~V 79 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR---VLFDVSNLAVRDRKV 79 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCE---eccchhccchhhcce
Confidence 566666 5566555454443 8999999999999999999999999999999986664 222222334557899
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||+..
T Consensus 80 GfvFQ~YA 87 (345)
T COG1118 80 GFVFQHYA 87 (345)
T ss_pred eEEEechh
Confidence 99999964
No 16
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.2e-17 Score=108.73 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=59.2
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.+.+++. +.|....++.+++ |++++|+||+||||||||++|+|+..|+.|.+...+. -+ ......
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~---~v------~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR---PV------TGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc---cc------CCCCCC
Confidence 4778888 7888877777776 8999999999999999999999999999999774432 11 112567
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
++++||++.
T Consensus 74 ~~~vFQ~~~ 82 (248)
T COG1116 74 IGYVFQEDA 82 (248)
T ss_pred EEEEeccCc
Confidence 899999863
No 17
>KOG0964|consensus
Probab=99.67 E-value=1.3e-16 Score=120.14 Aligned_cols=90 Identities=68% Similarity=1.132 Sum_probs=82.3
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|..+.|++|++|++..++.+|++..++|||.||||||+++.||.++|.....++. ..+..++++.+..+....+.|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk-~E~R~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLK-REERQGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcC-HHHHhhhhhcCCCcceEEEEEE
Confidence 899999999999999999888899999999999999999999999999988777776 5567778888988888899999
Q ss_pred EEEecCCCCCc
Q psy16868 81 IVFDNTDHRVP 91 (109)
Q Consensus 81 ~~fq~~~~~~~ 91 (109)
++|.+++..+|
T Consensus 80 IvF~nsdnr~~ 90 (1200)
T KOG0964|consen 80 IVFDNSDNRLP 90 (1200)
T ss_pred EEEeCcccccC
Confidence 99999988887
No 18
>PRK00064 recF recombination protein F; Reviewed
Probab=99.67 E-value=5.1e-16 Score=109.14 Aligned_cols=86 Identities=24% Similarity=0.427 Sum_probs=64.2
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|++|++.||++|.+.. + ++++++++|+||||+|||||++||+.+..+.+... ....+++..+.. ...|.
T Consensus 1 M~i~~l~i~nfr~~~~~~-l-~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~r~---~~~~~li~~g~~----~~~v~ 71 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELD-L-ELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSHRT---ARDKELIRFGAE----AAVIH 71 (361)
T ss_pred CEEEEEEEeCCCcccceE-E-EecCCeEEEECCCCCCHHHHHHHHHHhCCCCCccC---CChhHHHhcCCC----cEEEE
Confidence 899999999999998766 5 77889999999999999999999999876543331 123445665554 56788
Q ss_pred EEEecCCCCCceeEE
Q psy16868 81 IVFDNTDHRVPGFIR 95 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~ 95 (109)
..|...+....+.+.
T Consensus 72 ~~~~~~~~~~~i~~~ 86 (361)
T PRK00064 72 GRVEKGGRELPLGLE 86 (361)
T ss_pred EEEEeCCcEEEEEEE
Confidence 888655444444444
No 19
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=4e-17 Score=106.35 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=61.4
Q ss_pred eeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCc-----ccccccchhhhhhhcCCC
Q psy16868 3 IKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDES-----TSLRHSDSRQALLHEGTG 71 (109)
Q Consensus 3 i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~-----~~~~~~~~~~~~~~~~~~ 71 (109)
...++++|+ ..|++.+++++++ +.+++|+||+||||||+|+++..+...-. |.+.+.+. ++.....+
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~--ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGK--NIYDPKVD 82 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCe--eccCCCCC
Confidence 346888999 7788888888777 78999999999999999999999877443 55544332 12222233
Q ss_pred CceeeEEEEEEEecCC
Q psy16868 72 PRVVNAYVEIVFDNTD 87 (109)
Q Consensus 72 ~~~~~~~i~~~fq~~~ 87 (109)
.-..++.|+||||.|+
T Consensus 83 ~~~lRr~vGMVFQkPn 98 (253)
T COG1117 83 VVELRRRVGMVFQKPN 98 (253)
T ss_pred HHHHHHHheeeccCCC
Confidence 3455789999999874
No 20
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.2e-16 Score=106.38 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=62.1
Q ss_pred EEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+.++++ ..|.+. .++++++ ++.++|+|+||||||||+++|+|++.|+.|.+...+.... ........+++
T Consensus 4 i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~---~~~~~~~~~~~ 80 (235)
T COG1122 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS---SEKSLLELRQK 80 (235)
T ss_pred EEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc---chhhHHHhhcc
Confidence 667776 567654 5565555 7899999999999999999999999999999864442111 11223345788
Q ss_pred EEEEEecCCCCCc
Q psy16868 79 VEIVFDNTDHRVP 91 (109)
Q Consensus 79 i~~~fq~~~~~~~ 91 (109)
|+++||+|+.++.
T Consensus 81 vG~VfQnpd~q~~ 93 (235)
T COG1122 81 VGLVFQNPDDQLF 93 (235)
T ss_pred eEEEEECcccccc
Confidence 9999999998863
No 21
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=4.6e-16 Score=121.10 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=63.5
Q ss_pred CeeeEEEEeceeecCCCeeEecCCC--CceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDK--RHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~--~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
|++.+|+++||++|.+...+ +|+. ++++|+||||||||||++||++++++........+ .........+.....
T Consensus 1 M~~~~L~l~nf~s~~~~~~i-dF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~---~~~~~~~~~~~~~~~ 76 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTI-DFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVI---RSLNSLYAAPSEAAF 76 (1042)
T ss_pred CeeeEEEEeCeeccCCCcee-eecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccc---cccchhhcCCCCCeE
Confidence 99999999999999887656 7876 89999999999999999999999987544321011 001111111223567
Q ss_pred EEEEEecCCCCCceeE
Q psy16868 79 VEIVFDNTDHRVPGFI 94 (109)
Q Consensus 79 i~~~fq~~~~~~~~~~ 94 (109)
|.+.|...+..|.+.+
T Consensus 77 v~l~F~~~g~~y~~~r 92 (1042)
T TIGR00618 77 AELEFSLGTKIYRVHR 92 (1042)
T ss_pred EEEEEEECCEEEEEEE
Confidence 8888977666665444
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.65 E-value=1.1e-15 Score=119.01 Aligned_cols=85 Identities=39% Similarity=0.626 Sum_probs=61.9
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccc-ccccchhhhhhhcCCC--CceeeEE
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS-LRHSDSRQALLHEGTG--PRVVNAY 78 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ 78 (109)
+|.+|++.||++|.+...+ +|++++++|+||||||||||++||.+++....+. ++ .....+++..+.. .+...+.
T Consensus 1 ~i~~l~~~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r-~~~~~~~i~~g~~~~~~~~~~~ 78 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTI-NFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALR-GGKMEDVIFNGSETRKPLSLAE 78 (1179)
T ss_pred CeeEEEEeCccccCCCeeE-EecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhh-hccchhhhcCCCcccCCCCeeE
Confidence 4789999999999876546 8889999999999999999999999999754322 22 2223345555432 2234678
Q ss_pred EEEEEecCCC
Q psy16868 79 VEIVFDNTDH 88 (109)
Q Consensus 79 i~~~fq~~~~ 88 (109)
|.++|++++.
T Consensus 79 v~~~~~~~~~ 88 (1179)
T TIGR02168 79 VELVFDNSDG 88 (1179)
T ss_pred EEEEEecCCC
Confidence 9999987543
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.65 E-value=3.7e-16 Score=120.25 Aligned_cols=92 Identities=29% Similarity=0.421 Sum_probs=69.2
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|++.+|.+.||++|.+...-..+..++++|+|||||||||||+||++++++...... .....+++..+.. ...|.
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~----~~~V~ 75 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEK----SASVE 75 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCc----cEEEE
Confidence 899999999999999766322366899999999999999999999999998766322 1112334444443 47899
Q ss_pred EEEecCCCCCceeEEEe
Q psy16868 81 IVFDNTDHRVPGFIRCR 97 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~~~ 97 (109)
+.|+..+..|.+.+...
T Consensus 76 l~F~~~g~~Y~i~R~~~ 92 (908)
T COG0419 76 LEFEVNGKKYRIEREFR 92 (908)
T ss_pred EEEEECCEEEEEEeeec
Confidence 99997777777766543
No 24
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=4.9e-17 Score=107.19 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=58.1
Q ss_pred EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
++++|+ +.|... .++++++ |++++|+||+||||||||..|.++..|+.|.+.+.+..............+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 346666 545432 3455554 899999999999999999999999999999987665322212111122234
Q ss_pred eEEEEEEEecCCCC
Q psy16868 76 NAYVEIVFDNTDHR 89 (109)
Q Consensus 76 ~~~i~~~fq~~~~~ 89 (109)
+..|+++||+.+--
T Consensus 82 ~~~iGfvFQ~~nLl 95 (226)
T COG1136 82 RKKIGFVFQNFNLL 95 (226)
T ss_pred HHhEEEECccCCCC
Confidence 67799999997543
No 25
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.65 E-value=1e-15 Score=100.13 Aligned_cols=84 Identities=26% Similarity=0.509 Sum_probs=57.3
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccc-cchhhhhhhcCCCCceeeEEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH-SDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
+++|+++||++|.+...+ +|+.++++|+||||+|||||++||++++.+....-.. .....+.+..+ ...+.|++
T Consensus 1 ~~~l~l~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~----~~~~~v~~ 75 (204)
T cd03240 1 IDKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG----EVRAQVKL 75 (204)
T ss_pred CcEEEEECcccccCceEE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC----CCcEEEEE
Confidence 468999999997666546 7887899999999999999999998777543321110 00012223332 23788999
Q ss_pred EEecC-CCCCc
Q psy16868 82 VFDNT-DHRVP 91 (109)
Q Consensus 82 ~fq~~-~~~~~ 91 (109)
+||++ ..++.
T Consensus 76 ~f~~~~~~~~~ 86 (204)
T cd03240 76 AFENANGKKYT 86 (204)
T ss_pred EEEeCCCCEEE
Confidence 99998 33343
No 26
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.7e-15 Score=102.83 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=62.8
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
|.+|+++||++|.+.. + +|++++++|+|||||||||+++||..++.+...... ...+++..+.. .+.|...
T Consensus 1 l~~l~i~nfr~~~~~~-~-~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~---~~~~~i~~~~~----~~~v~~~ 71 (270)
T cd03242 1 LKSLELRNFRNYAELE-L-EFEPGVTVLVGENAQGKTNLLEAISLLATGKSHRTS---RDKELIRWGAE----EAKISAV 71 (270)
T ss_pred CcEEEEeCCcCcceeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHhccCCCCCCC---CHHHHHhcCCC----CEEEEEE
Confidence 4689999999998765 5 788899999999999999999999999876533211 13345555543 6778888
Q ss_pred EecCCCCCceeEEE
Q psy16868 83 FDNTDHRVPGFIRC 96 (109)
Q Consensus 83 fq~~~~~~~~~~~~ 96 (109)
|.......++.+..
T Consensus 72 f~~~~~~~~i~~~~ 85 (270)
T cd03242 72 LERQGGELALELTI 85 (270)
T ss_pred EEeCCCeEEEEEEE
Confidence 87765555555544
No 27
>PRK14079 recF recombination protein F; Provisional
Probab=99.64 E-value=2.1e-15 Score=105.60 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=60.1
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|.+|++.||++|.+.. + +|++++++|+|+||+|||||++||+.++.+... .....+++..+.. ...|.
T Consensus 1 M~i~~l~l~nfRn~~~~~-l-~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs~r----~~~~~~lI~~g~~----~~~v~ 70 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPT-L-AFPPGVTAVVGENAAGKTNLLEAIYLALTGELP----NGRLADLVRFGEG----EAWVH 70 (349)
T ss_pred CEEEEEEEeccCCcccce-E-EeCCCeEEEECCCCCCHHHHHHHHHHHhcCCCC----CCcHHhheecCCC----cEEEE
Confidence 899999999999998876 6 888899999999999999999999988765322 2223445555543 46677
Q ss_pred EEEecCCCC
Q psy16868 81 IVFDNTDHR 89 (109)
Q Consensus 81 ~~fq~~~~~ 89 (109)
..|+..+..
T Consensus 71 ~~~~~~~~~ 79 (349)
T PRK14079 71 AEVETGGGL 79 (349)
T ss_pred EEEEeCCCe
Confidence 777655443
No 28
>KOG0018|consensus
Probab=99.64 E-value=2.2e-16 Score=119.66 Aligned_cols=100 Identities=32% Similarity=0.463 Sum_probs=74.5
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|.+..|++.||++|...+++-+|+ .+|+||||||||||+||+||++++.-.++.++ .....++++ +.+. ++.+.
T Consensus 2 g~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~LR-~~~lkdLIy-g~~i---~~~v~ 75 (1141)
T KOG0018|consen 2 GRLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLR-VSHLKDLIY-GKPI---RKPVT 75 (1141)
T ss_pred CceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcccc-cchHHHHhc-CCcc---CCchh
Confidence 457789999999999999887887 99999999999999999999999998888877 444566676 4332 34455
Q ss_pred EEEecCCCCCc-eeEEEeecceeeeeee
Q psy16868 81 IVFDNTDHRVP-GFIRCRSTSVDLYRCS 107 (109)
Q Consensus 81 ~~fq~~~~~~~-~~~~~~~~~~~~~~~~ 107 (109)
++|+-+++... +.+.+. .....|+++
T Consensus 76 l~Y~~~dg~~~~F~R~I~-~G~seY~ID 102 (1141)
T KOG0018|consen 76 LKYEEGDGETRRFTRAIN-GGTSEYMID 102 (1141)
T ss_pred heeecCCchhhhhhhhhc-CCceeEEEc
Confidence 88888876543 333233 444445543
No 29
>PRK02224 chromosome segregation protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=116.98 Aligned_cols=87 Identities=25% Similarity=0.378 Sum_probs=67.3
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|..|.+.||++|.+.. + +|++++++|+||||||||||++||.+++++.... .+...+++..+.. ...|.
T Consensus 1 M~i~~l~l~nf~~~~~~~-~-~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~---~~~~~~~~~~~~~----~~~v~ 71 (880)
T PRK02224 1 MRFDRVRLENFKCYADAD-L-RLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL---DDTLDDVITIGAE----EAEIE 71 (880)
T ss_pred CeEEEEEEECcccccceE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc---cccHHHHHhCCCC----cEEEE
Confidence 999999999999998766 5 7888999999999999999999999999865432 1112334444432 57899
Q ss_pred EEEecCCCCCceeEEE
Q psy16868 81 IVFDNTDHRVPGFIRC 96 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~~ 96 (109)
+.|.+.+..+.+.++.
T Consensus 72 ~~f~~~~~~~~i~r~~ 87 (880)
T PRK02224 72 LWFEHAGGEYHIERRV 87 (880)
T ss_pred EEEEECCEEEEEEEEE
Confidence 9998877777666554
No 30
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.63 E-value=1.4e-15 Score=97.69 Aligned_cols=82 Identities=41% Similarity=0.576 Sum_probs=56.9
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
|+++++.||++|++.. +....+.+++|+||||+||||+++||+.++........... ...+...........++|+++
T Consensus 1 i~~i~l~nf~~~~~~~-~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~ 78 (178)
T cd03239 1 IKQITLKNFKSYRDET-VVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGS-LLFLAGGGVKAGINSASVEIT 78 (178)
T ss_pred CcEEEEECccCCCCCE-EecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcc-hhhhcccccCCCCceEEEEEE
Confidence 4689999999998887 42443349999999999999999999999987655433111 111112222333447889988
Q ss_pred EecC
Q psy16868 83 FDNT 86 (109)
Q Consensus 83 fq~~ 86 (109)
|++.
T Consensus 79 f~~~ 82 (178)
T cd03239 79 FDKS 82 (178)
T ss_pred EECc
Confidence 8765
No 31
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.63 E-value=3.3e-16 Score=107.98 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=62.8
Q ss_pred CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868 1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+...++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|+.|.+.+.+.. .. . . ...
T Consensus 3 ~~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~--~~-~-~-~~~ 77 (306)
T PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP--VP-S-R-ARH 77 (306)
T ss_pred CCCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe--cc-c-c-hHH
Confidence 33446889999 8898777777776 88999999999999999999999999999998755421 11 1 1 112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.++.|++++|++.
T Consensus 78 ~~~~ig~v~q~~~ 90 (306)
T PRK13537 78 ARQRVGVVPQFDN 90 (306)
T ss_pred HHhcEEEEeccCc
Confidence 3567999999864
No 32
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=2.1e-16 Score=103.78 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=61.4
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ ..|+..+++++++ +++++|+|+||+||||||++|+|+.++.+|.+.+.+.+. ..-.+....+..|
T Consensus 4 L~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~di---t~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI---TGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeec---CCCCHHHHHhCCe
Confidence 678888 6788888888877 899999999999999999999999999999998665422 1222223346678
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++|+|..
T Consensus 81 ~~VPegR 87 (237)
T COG0410 81 AYVPEGR 87 (237)
T ss_pred EeCcccc
Confidence 8888764
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.62 E-value=5.1e-16 Score=108.40 Aligned_cols=79 Identities=22% Similarity=0.256 Sum_probs=61.6
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
..|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... . .. ....+.
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~---~-~~-~~~~~~ 114 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV---P-AR-ARLARA 114 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEEC---C-cc-hHHHhc
Confidence 35889999 8898777777766 899999999999999999999999999999988655311 1 11 112356
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 115 ~ig~v~q~~~ 124 (340)
T PRK13536 115 RIGVVPQFDN 124 (340)
T ss_pred cEEEEeCCcc
Confidence 7999999854
No 34
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.62 E-value=2.7e-16 Score=107.87 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=62.5
Q ss_pred eEEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 4 KQVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 4 ~~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
..+++.|+ +.|+ +..++.+++ |++++|+||||||||||+++|+|++.|++|.+.+.+.. .... ....+
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~----~~~~-~~~~~ 77 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD----VVKE-PAKVR 77 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEe----CccC-HHHHH
Confidence 46888999 8899 577788777 78999999999999999999999999999998855421 1111 22335
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 78 ~~igy~~~~~~ 88 (293)
T COG1131 78 RRIGYVPQEPS 88 (293)
T ss_pred hheEEEccCCC
Confidence 67999999875
No 35
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.62 E-value=2.2e-15 Score=99.09 Aligned_cols=51 Identities=39% Similarity=0.712 Sum_probs=46.0
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
|.|++|+++||++|+...++++++-++++|+|||||||||++++|..++..
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~ 51 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGF 51 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 889999999999999888777777789999999999999999999977553
No 36
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.62 E-value=2.1e-16 Score=103.92 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=54.7
Q ss_pred EEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 7 IIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 7 ~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+...............+
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 56677 56754 44566665 8899999999999999999999999999999875542110000000000123
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..+++++|++.
T Consensus 82 ~~i~~~~q~~~ 92 (218)
T cd03255 82 RHIGFVFQSFN 92 (218)
T ss_pred hcEEEEeeccc
Confidence 56999999853
No 37
>PRK01156 chromosome segregation protein; Provisional
Probab=99.62 E-value=2.1e-15 Score=115.89 Aligned_cols=86 Identities=28% Similarity=0.447 Sum_probs=66.6
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|.|.+|++.||++|.+.. + +|++++++|+|+||||||||++||.+++++.... ....+++..+.. .+.|.
T Consensus 1 M~i~~l~l~NF~s~~~~~-i-~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~~----~~~~~~i~~~~~----~~~V~ 70 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSE-I-EFDTGINIITGKNGAGKSSIVDAIRFALFTDKRT----EKIEDMIKKGKN----NLEVE 70 (895)
T ss_pred CeEEEEEEeCccCCCCce-E-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCccc----ccHHHHhhCCCC----eEEEE
Confidence 899999999999998765 6 8899999999999999999999999988754321 112334444432 68899
Q ss_pred EEEecCCCCCceeEEE
Q psy16868 81 IVFDNTDHRVPGFIRC 96 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~~ 96 (109)
+.|...+..+.+.+..
T Consensus 71 l~f~~~g~~y~i~R~~ 86 (895)
T PRK01156 71 LEFRIGGHVYQIRRSI 86 (895)
T ss_pred EEEEECCEEEEEEEEE
Confidence 9998766666666554
No 38
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=4.1e-16 Score=106.74 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=59.6
Q ss_pred EEEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.++++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+.............
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3778888 67753 23566665 8999999999999999999999999999999886553111000011112
Q ss_pred eeeEEEEEEEecCCCC
Q psy16868 74 VVNAYVEIVFDNTDHR 89 (109)
Q Consensus 74 ~~~~~i~~~fq~~~~~ 89 (109)
..+..|+++||++...
T Consensus 82 ~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQ 97 (290)
T ss_pred HHHhhEEEEeeCchhh
Confidence 2345799999987533
No 39
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.61 E-value=3.1e-15 Score=97.51 Aligned_cols=79 Identities=25% Similarity=0.486 Sum_probs=57.1
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
|.+|++.||++|++.. + +|+.++++|+||||+|||||+++|..++.+............+++..+.. ...|.++
T Consensus 1 i~~l~l~nfr~~~~~~-l-~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~----~~~i~~~ 74 (198)
T cd03276 1 IESITLKNFMCHRHLQ-I-EFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGES----SAKITVT 74 (198)
T ss_pred CeEEEEeCccceeeeE-E-ecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCC----eEEEEEE
Confidence 4689999999997665 5 78888999999999999999999998887654321111112334443332 5778999
Q ss_pred EecCC
Q psy16868 83 FDNTD 87 (109)
Q Consensus 83 fq~~~ 87 (109)
|++..
T Consensus 75 ~~~~~ 79 (198)
T cd03276 75 LKNQG 79 (198)
T ss_pred EEcCC
Confidence 98753
No 40
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=8.9e-16 Score=107.76 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=59.0
Q ss_pred EEEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ +.| .+..++++++ |++++|+|||||||||||++|+|+..|..|.+.+++... ... ++.++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i----~~~--~~~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV----NEL--EPADR 76 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC----CCC--CHHHC
Confidence 4788898 778 5656666665 889999999999999999999999999999988655311 111 12246
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|+++||++
T Consensus 77 ~ig~v~Q~~ 85 (356)
T PRK11650 77 DIAMVFQNY 85 (356)
T ss_pred CEEEEeCCc
Confidence 799999986
No 41
>PRK03918 chromosome segregation protein; Provisional
Probab=99.60 E-value=3.7e-15 Score=114.24 Aligned_cols=90 Identities=27% Similarity=0.352 Sum_probs=65.3
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|.+|.+.||++|.+.. + +|++++++|+|+||+||||+++||.+++++..+.........+++..+.. .+.|.
T Consensus 1 m~i~~l~i~nf~~~~~~~-i-~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~v~ 74 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSV-V-EFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGS----GTEIE 74 (880)
T ss_pred CeeEEEEEeCccCccCce-E-ecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCC----CEEEE
Confidence 899999999999998765 6 78889999999999999999999999998543321101111233433332 67889
Q ss_pred EEEecCCCCCceeEEE
Q psy16868 81 IVFDNTDHRVPGFIRC 96 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~~ 96 (109)
+.|...+..+.+.+..
T Consensus 75 ~~f~~~~~~~~i~R~~ 90 (880)
T PRK03918 75 LKFEKNGRKYRIVRSF 90 (880)
T ss_pred EEEEECCeEEEEEEEE
Confidence 9998766666655544
No 42
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.7e-15 Score=100.98 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=57.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... . ... ..+..+
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~-~~~--~~~~~i 76 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA---T-DVP--VQERNV 76 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---C-cCC--ccccce
Confidence 678888 6787666676665 899999999999999999999999999999987554311 1 111 113569
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 77 ~~v~q~~~ 84 (239)
T cd03296 77 GFVFQHYA 84 (239)
T ss_pred EEEecCCc
Confidence 99999863
No 43
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=5.2e-16 Score=106.03 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=58.4
Q ss_pred EEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
++++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+..............
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 678888 67753 23566665 88999999999999999999999999999998855431100000111122
Q ss_pred eeEEEEEEEecCCC
Q psy16868 75 VNAYVEIVFDNTDH 88 (109)
Q Consensus 75 ~~~~i~~~fq~~~~ 88 (109)
.+..|+++||++..
T Consensus 83 ~~~~ig~v~q~~~~ 96 (286)
T PRK13646 83 VRKRIGMVFQFPES 96 (286)
T ss_pred HHhheEEEecChHh
Confidence 35679999998743
No 44
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.60 E-value=9.1e-16 Score=107.60 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=59.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|.+..++++++ +++++|+|||||||||||++|+|+..|..|.+.+.+.. + .. .++.++.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~---~-~~--~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD---I-TR--LPPQKRD 77 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEE---C-CC--CCHHHCC
Confidence 4888998 7887766666554 89999999999999999999999999999998865531 1 11 1123567
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+++||++
T Consensus 78 ig~v~Q~~ 85 (353)
T TIGR03265 78 YGIVFQSY 85 (353)
T ss_pred EEEEeCCc
Confidence 99999985
No 45
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.60 E-value=1.3e-15 Score=81.56 Aligned_cols=49 Identities=33% Similarity=0.548 Sum_probs=42.3
Q ss_pred eeEEEEeceeecCCCeeEecCC--CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFD--KRHNVVVGRNGSGKSNFFFAIQFVLSDES 53 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~--~~~~~i~G~NG~GKStll~al~~~l~~~~ 53 (109)
++++++.||..|.... + +++ +..++|+|+||+|||||++||..++.+..
T Consensus 1 L~rl~L~Nw~~f~~~~-~-~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGET-I-DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeE-E-eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4689999999998844 5 666 46899999999999999999999999876
No 46
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.1e-15 Score=102.09 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=58.2
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... . .......+..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i---~-~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI---K-TIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh---h-hcChHHhhhc
Confidence 4788888 6776655666665 899999999999999999999999999999988554311 1 1111122457
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||++
T Consensus 79 i~~~~q~~ 86 (241)
T PRK14250 79 IGMVFQQP 86 (241)
T ss_pred EEEEecCc
Confidence 99999985
No 47
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.60 E-value=5.3e-16 Score=102.22 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=54.9
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. +.........+..|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~---~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD---ITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE---cCCCCHHHHHhcCe
Confidence 356677 5676655566655 89999999999999999999999999999998755421 11111111113468
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+++||++
T Consensus 78 ~~~~q~~ 84 (222)
T cd03224 78 GYVPEGR 84 (222)
T ss_pred EEecccc
Confidence 9999986
No 48
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.60 E-value=7.2e-16 Score=102.22 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=55.1
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI---TKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec---ccCCHhHHHhccE
Confidence 356677 6676655566665 889999999999999999999999999999987554311 1101001113468
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+++||++
T Consensus 78 ~~~~q~~ 84 (232)
T cd03218 78 GYLPQEA 84 (232)
T ss_pred EEecCCc
Confidence 9999976
No 49
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.2e-15 Score=106.95 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=59.6
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|+..++.|.+.+++... .. .+..++.
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i----~~--~~~~~r~ 79 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV----TH--RSIQQRD 79 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC----CC--CCHHHCC
Confidence 5788898 7787766566565 899999999999999999999999999999988655311 11 1223567
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+++||++
T Consensus 80 ig~vfQ~~ 87 (351)
T PRK11432 80 ICMVFQSY 87 (351)
T ss_pred EEEEeCCc
Confidence 99999986
No 50
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.60 E-value=7.8e-16 Score=98.75 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=62.7
Q ss_pred EEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
|+++|. +.|..-. ++.+++ ++++.|+||+||||||||+.|++...|+.|.+.+++.....+ .+.+.+..++.
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l-~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRL-KGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccc-cccccchhhhe
Confidence 567788 7776643 555554 899999999999999999999999999999998766433222 33445556889
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|++|||+..
T Consensus 81 IGvVFQD~r 89 (223)
T COG2884 81 IGVVFQDFR 89 (223)
T ss_pred eeeEeeecc
Confidence 999999863
No 51
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=7e-16 Score=102.55 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=55.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC-CCceeeEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-GPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 78 (109)
|+++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... ..... .....+..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~--~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI--SGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc--cccChhhHHHHhcc
Confidence 356677 5676655566665 899999999999999999999999999999987554311 00000 00122457
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+++||++
T Consensus 79 i~~v~q~~ 86 (235)
T cd03261 79 MGMLFQSG 86 (235)
T ss_pred eEEEccCc
Confidence 99999986
No 52
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.59 E-value=4.7e-16 Score=110.93 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=65.3
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.+++.+. +.|....+.++++ |++++|+|+||||||||+++|+|++.|++|.+.++++ -+....+.+..+..
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~---~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK---EVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCE---EeccCCHHHHHHcC
Confidence 5788888 8888766655555 8999999999999999999999999999999987664 23334444556788
Q ss_pred EEEEEecCCC
Q psy16868 79 VEIVFDNTDH 88 (109)
Q Consensus 79 i~~~fq~~~~ 88 (109)
|+||+|++.-
T Consensus 81 IGMVhQHF~L 90 (501)
T COG3845 81 IGMVHQHFML 90 (501)
T ss_pred CcEEeecccc
Confidence 9999999744
No 53
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=5.9e-16 Score=102.29 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=64.4
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++++ ++|++..++++++ |++++|+||+|+||||||+.|.|++.|+.|.+.+.+....-. ........+.+
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~l-s~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQL-SEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhcc-CHHHHHHHHhh
Confidence 5889999 8899988787776 899999999999999999999999999999998665422111 11122344678
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||+.
T Consensus 87 ~GvlFQ~g 94 (263)
T COG1127 87 MGVLFQQG 94 (263)
T ss_pred eeEEeecc
Confidence 99999986
No 54
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.59 E-value=5.9e-16 Score=102.87 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=54.2
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. +.........+..++
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~---~~~~~~~~~~~~~i~ 78 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED---ITGLPPHEIARLGIG 78 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE---CCCCCHHHHHhcCEE
Confidence 45666 5666555566555 88999999999999999999999999999998754421 111110011134589
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
++||++.
T Consensus 79 ~v~q~~~ 85 (236)
T cd03219 79 RTFQIPR 85 (236)
T ss_pred EEecccc
Confidence 9999863
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=8.6e-16 Score=101.23 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=56.1
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ +++++|+||||||||||+++|+|++.|..|.+.+.+... .. . ....+..+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~---~~-~-~~~~~~~i 75 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV---VR-E-PREVRRRI 75 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec---Cc-C-hHHHhhcE
Confidence 356777 6676655666665 899999999999999999999999999999987554211 11 1 11224568
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 76 ~~~~q~~~ 83 (220)
T cd03265 76 GIVFQDLS 83 (220)
T ss_pred EEecCCcc
Confidence 99999864
No 56
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=1.1e-15 Score=100.19 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=54.7
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. .. .....++
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~---~~-~~--~~~~~i~ 75 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV---TG-VP--PERRNIG 75 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc---Cc-Cc--hhhccEE
Confidence 46666 5676555566655 889999999999999999999999999999987554311 11 11 1235689
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
+++|++.
T Consensus 76 ~v~q~~~ 82 (213)
T cd03259 76 MVFQDYA 82 (213)
T ss_pred EEcCchh
Confidence 9999863
No 57
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.59 E-value=1.7e-15 Score=106.22 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=58.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... . .. ...++.|
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i---~-~~--~~~~r~i 76 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV---S-RL--HARDRKV 76 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---C-CC--CHHHCCE
Confidence 678888 7787766666665 899999999999999999999999999999988655311 1 11 1224579
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+++||++
T Consensus 77 ~~v~Q~~ 83 (353)
T PRK10851 77 GFVFQHY 83 (353)
T ss_pred EEEecCc
Confidence 9999985
No 58
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.59 E-value=9.8e-15 Score=114.01 Aligned_cols=87 Identities=36% Similarity=0.581 Sum_probs=62.8
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC-CceeeEEEE
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG-PRVVNAYVE 80 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~ 80 (109)
+|++|.+.||++|.+...+ +|++++++|+|||||||||+++||.++++...+.........+++..+.. .....+.|.
T Consensus 1 ~i~~l~l~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~ 79 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVI-PFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVT 79 (1164)
T ss_pred CeeEEEEeCeeeECCeeEE-eecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEE
Confidence 4789999999999875556 78889999999999999999999999997654321112223345544211 123367888
Q ss_pred EEEecCCCC
Q psy16868 81 IVFDNTDHR 89 (109)
Q Consensus 81 ~~fq~~~~~ 89 (109)
+.|.+....
T Consensus 80 ~~f~~~~~~ 88 (1164)
T TIGR02169 80 VTFKNDDGK 88 (1164)
T ss_pred EEEEcCCCC
Confidence 899887655
No 59
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.7e-15 Score=106.77 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=59.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.+... ... ....+.
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i----~~~--~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM----NDV--PPAERG 76 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC----CCC--CHhHCC
Confidence 4888998 7787766666665 899999999999999999999999999999988555311 111 112356
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 77 i~~v~Q~~~ 85 (369)
T PRK11000 77 VGMVFQSYA 85 (369)
T ss_pred EEEEeCCcc
Confidence 999999863
No 60
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=2.6e-16 Score=104.06 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=61.5
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++++ ++|+...++++++ +++++|+|||||||||++++|+|.+.|+.|.+.+.+.... .-.+....+..|
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it---~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT---GLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccC---CCCHHHHHhccc
Confidence 678898 8899888887776 8999999999999999999999999999999986664211 111222335667
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
.-.||++
T Consensus 82 ~RTFQ~~ 88 (250)
T COG0411 82 ARTFQIT 88 (250)
T ss_pred eeecccc
Confidence 8889986
No 61
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.59 E-value=1.6e-15 Score=107.10 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=59.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|++.+..|.+.+.+... .. .+..++.
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i----~~--~~~~~r~ 87 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI----TH--VPAENRH 87 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC----CC--CCHHHCC
Confidence 4788898 7787766566555 899999999999999999999999999999988655311 11 1122467
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 88 ig~vfQ~~~ 96 (375)
T PRK09452 88 VNTVFQSYA 96 (375)
T ss_pred EEEEecCcc
Confidence 999999863
No 62
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.59 E-value=1.9e-15 Score=106.25 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=60.4
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCc--ccccccchhhhhhhcCCCCcee
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDES--TSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
..|+++|+ +.|....++++++ +++++|+|||||||||||++|+|++.|.. |.+.+.+... .. .+..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~----~~--~~~~ 77 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDL----TH--APPH 77 (362)
T ss_pred eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEEC----CC--CCHH
Confidence 36888998 7887766666665 88999999999999999999999999999 9988655311 11 1122
Q ss_pred eEEEEEEEecCC
Q psy16868 76 NAYVEIVFDNTD 87 (109)
Q Consensus 76 ~~~i~~~fq~~~ 87 (109)
.+.|+++||++.
T Consensus 78 ~r~ig~vfQ~~~ 89 (362)
T TIGR03258 78 KRGLALLFQNYA 89 (362)
T ss_pred HCCEEEEECCcc
Confidence 467999999864
No 63
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.59 E-value=1.4e-15 Score=104.68 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=58.7
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. .....+..|
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~--~~~~~~~~i 79 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV---PS--RARLARVAI 79 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---cc--cHHHHhhcE
Confidence 778888 7787766676665 899999999999999999999999999999987554311 11 111224679
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 80 ~~v~q~~~ 87 (303)
T TIGR01288 80 GVVPQFDN 87 (303)
T ss_pred EEEecccc
Confidence 99999864
No 64
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.59 E-value=8.6e-16 Score=101.78 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=55.1
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+.. +............++
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED---ITKLPPHERARAGIA 78 (230)
T ss_pred EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE---CCCCCHHHHHHhCeE
Confidence 46676 5676555566655 89999999999999999999999999999998755421 111111111135689
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
++||++.
T Consensus 79 ~~~q~~~ 85 (230)
T TIGR03410 79 YVPQGRE 85 (230)
T ss_pred EeccCCc
Confidence 9999863
No 65
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=9.9e-16 Score=103.88 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=57.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... ..........+..|
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i--~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL--DYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc--ccccCCHHHHHhhe
Confidence 567888 6776655565555 889999999999999999999999999999987555311 10111111224569
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 80 ~~v~q~~~ 87 (271)
T PRK13638 80 ATVFQDPE 87 (271)
T ss_pred EEEeeChh
Confidence 99999864
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.58 E-value=1.5e-15 Score=107.98 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=61.0
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.+... .........+.+
T Consensus 4 L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i----~~~~~~~~~~~i 79 (402)
T PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV----EALSARAASRRV 79 (402)
T ss_pred EEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEc----CcCCHHHHhcce
Confidence 788898 7888777777776 899999999999999999999999999999988655311 111112235679
Q ss_pred EEEEecCCC
Q psy16868 80 EIVFDNTDH 88 (109)
Q Consensus 80 ~~~fq~~~~ 88 (109)
++++|++..
T Consensus 80 g~v~q~~~l 88 (402)
T PRK09536 80 ASVPQDTSL 88 (402)
T ss_pred EEEccCCCC
Confidence 999998643
No 67
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.58 E-value=1e-15 Score=100.32 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=55.1
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|....++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... ..........+..|+
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~~~~~~i~ 79 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL--TDDKKNINELRQKVG 79 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC--CccchhHHHHHhcce
Confidence 45666 5566555555554 889999999999999999999999999999987554311 101111112246799
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
+++|++.
T Consensus 80 ~~~q~~~ 86 (213)
T cd03262 80 MVFQQFN 86 (213)
T ss_pred EEecccc
Confidence 9999863
No 68
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=1.9e-14 Score=101.31 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=61.9
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|++.+|++.||++|.+.. + ++++++++|+||||+|||||++||+.+..+.+.+. ....+++..+.. ...|.
T Consensus 1 M~l~~L~i~nFR~~~~~~-l-~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~R~---~~~~~li~~g~~----~~~v~ 71 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVD-L-ELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSHRT---SRDKPLIRFGAE----AFVIE 71 (365)
T ss_pred CEEEEEEEeCCcceeeeE-E-EECCCeEEEECCCCCCHHHHHHHHHHHcccCCccc---cchhhHHhCCCC----eEEEE
Confidence 899999999999998766 5 67788999999999999999999998876654332 123445655544 67788
Q ss_pred EEEecCCCCC
Q psy16868 81 IVFDNTDHRV 90 (109)
Q Consensus 81 ~~fq~~~~~~ 90 (109)
..|...+...
T Consensus 72 ~~~~~~~~~~ 81 (365)
T TIGR00611 72 GRVSKGDREV 81 (365)
T ss_pred EEEEeCCceE
Confidence 8887654443
No 69
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.58 E-value=3.9e-16 Score=104.13 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=62.4
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|. +.|.+..++++++ +++.+|+||+||||||+|++|..++.|++|.+.+++.. ....+....+++|
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~----i~~~d~~~LRr~I 77 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED----ISDLDPVELRRKI 77 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee----cccCCHHHHHHhh
Confidence 578888 8898887777776 89999999999999999999999999999999866531 1233344557889
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+|+.|..
T Consensus 78 GYviQqi 84 (309)
T COG1125 78 GYVIQQI 84 (309)
T ss_pred hhhhhhc
Confidence 9998874
No 70
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.2e-15 Score=104.32 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=57.9
Q ss_pred EEEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ ..|... .++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+..............
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 567777 667521 2566665 89999999999999999999999999999998855531110000011112
Q ss_pred eeEEEEEEEecCCCC
Q psy16868 75 VNAYVEIVFDNTDHR 89 (109)
Q Consensus 75 ~~~~i~~~fq~~~~~ 89 (109)
.+..|+++||++...
T Consensus 82 ~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 82 VRKKVGVVFQFPESQ 96 (288)
T ss_pred HHhhEEEEecCcchh
Confidence 356799999987433
No 71
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=1e-14 Score=96.07 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=58.4
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
.|.+|+++||++|++.. + +++.++++|+|+||+||||||+||+.++..............+++..+.. ...|.+
T Consensus 2 ~i~~i~i~nfr~~~~~~-i-~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~----~~~v~~ 75 (213)
T cd03277 2 SIVRIKLENFVTYDETE-F-RPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCD----EGTIEI 75 (213)
T ss_pred eeEEEEEeCCCCcceeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCC----cEEEEE
Confidence 36789999999996554 5 77788999999999999999999999997654322112223445555543 566777
Q ss_pred EEecCCC
Q psy16868 82 VFDNTDH 88 (109)
Q Consensus 82 ~fq~~~~ 88 (109)
.|+..+.
T Consensus 76 ~~~~~~~ 82 (213)
T cd03277 76 ELYGNPG 82 (213)
T ss_pred EEEeCCC
Confidence 7776543
No 72
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=7.6e-16 Score=104.90 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=62.1
Q ss_pred EEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|++++. +.|.. ..++++++ |++.+|+|.+|||||||+++|.++..|++|.+..++.... ...+...+.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~-~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT-ALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecc-cCChHHHHH
Confidence 566666 66654 34566665 8999999999999999999999999999999886663221 223344455
Q ss_pred eeEEEEEEEecCCC
Q psy16868 75 VNAYVEIVFDNTDH 88 (109)
Q Consensus 75 ~~~~i~~~fq~~~~ 88 (109)
.++.|+|+||+++-
T Consensus 81 ~R~~IGMIFQhFnL 94 (339)
T COG1135 81 LRQKIGMIFQHFNL 94 (339)
T ss_pred HHhhccEEeccccc
Confidence 68899999999754
No 73
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.58 E-value=2.8e-15 Score=98.23 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=54.8
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|....++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. .. ..+..++
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~---~~-~~--~~~~~i~ 75 (213)
T cd03301 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV---TD-LP--PKDRDIA 75 (213)
T ss_pred EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---Cc-CC--cccceEE
Confidence 46666 5666555566655 889999999999999999999999999999987554311 11 11 1135799
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
+++|++.
T Consensus 76 ~~~q~~~ 82 (213)
T cd03301 76 MVFQNYA 82 (213)
T ss_pred EEecChh
Confidence 9999863
No 74
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.58 E-value=1.8e-15 Score=100.12 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=58.0
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+.. +. ..........+
T Consensus 8 i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~-~~~~~~~~~~i 83 (225)
T PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGED---IS-TLKPEIYRQQV 83 (225)
T ss_pred EEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE---cC-cCCHHHHHhcc
Confidence 778888 6787666677666 89999999999999999999999999999998754421 10 11111124578
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 84 ~~~~q~~~ 91 (225)
T PRK10247 84 SYCAQTPT 91 (225)
T ss_pred EEEecccc
Confidence 99998853
No 75
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.1e-15 Score=101.61 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=56.3
Q ss_pred EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC-c
Q psy16868 5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP-R 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 73 (109)
-++++|+ +.|.+ ..++++++ +++++|+||||||||||+++|+|++.|..|.+.+.+... ....... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i--~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM--SKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc--CcCCHHHHH
Confidence 4788888 67754 34566655 889999999999999999999999999999988554311 0000000 0
Q ss_pred -eeeEEEEEEEecC
Q psy16868 74 -VVNAYVEIVFDNT 86 (109)
Q Consensus 74 -~~~~~i~~~fq~~ 86 (109)
..+..|+++||++
T Consensus 83 ~~~~~~i~~v~q~~ 96 (233)
T PRK11629 83 ELRNQKLGFIYQFH 96 (233)
T ss_pred HHHhccEEEEecCc
Confidence 0125699999985
No 76
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.7e-15 Score=101.07 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=58.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+.. +.........+..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED---ISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE---CCCCCHHHHHHhC
Confidence 3788888 6787666676666 89999999999999999999999999999998755421 1110110112356
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|++++|++
T Consensus 80 i~~~~q~~ 87 (241)
T PRK10895 80 IGYLPQEA 87 (241)
T ss_pred eEEeccCC
Confidence 89999986
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.3e-15 Score=103.55 Aligned_cols=80 Identities=16% Similarity=0.335 Sum_probs=58.9
Q ss_pred EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ +.|. ...++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+... ........+.
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~ 79 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV----NAENEKWVRS 79 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEC----CCCCHHHHHh
Confidence 3778888 6775 344566665 899999999999999999999999999999988555311 1111122245
Q ss_pred EEEEEEecCCC
Q psy16868 78 YVEIVFDNTDH 88 (109)
Q Consensus 78 ~i~~~fq~~~~ 88 (109)
.|+++||++..
T Consensus 80 ~i~~v~q~~~~ 90 (274)
T PRK13647 80 KVGLVFQDPDD 90 (274)
T ss_pred hEEEEecChhh
Confidence 79999998743
No 78
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.8e-15 Score=102.79 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=57.3
Q ss_pred EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
++++|+ +.|. ...++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.. +............
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID---TGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE---CCccccHHHHHhh
Confidence 567787 6774 344566665 89999999999999999999999999999998755431 1111111122457
Q ss_pred EEEEEecCCC
Q psy16868 79 VEIVFDNTDH 88 (109)
Q Consensus 79 i~~~fq~~~~ 88 (109)
|+++||++..
T Consensus 79 i~~v~q~~~~ 88 (274)
T PRK13644 79 VGIVFQNPET 88 (274)
T ss_pred eEEEEEChhh
Confidence 9999998753
No 79
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.58 E-value=2.6e-15 Score=99.20 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=56.5
Q ss_pred EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC-CCce
Q psy16868 6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-GPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (109)
|+++|+ ..|.+. .++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... ..... ....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~~~ 79 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL--LKLSRRLRKI 79 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc--cccchhhHHH
Confidence 456777 567543 4566665 899999999999999999999999999999987554311 00000 0112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..+++++|++.
T Consensus 80 ~~~~i~~~~q~~~ 92 (228)
T cd03257 80 RRKEIQMVFQDPM 92 (228)
T ss_pred hhccEEEEecCch
Confidence 3467999999873
No 80
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.7e-15 Score=100.82 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=58.7
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
--++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. +.........+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~---~~~~~~~~~~~~ 80 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKD---ITDWQTAKIMRE 80 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEe---cCCCCHHHHHHh
Confidence 34788888 6787665666665 89999999999999999999999999999998755431 111000111245
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.+++++|++.
T Consensus 81 ~i~~~~q~~~ 90 (237)
T PRK11614 81 AVAIVPEGRR 90 (237)
T ss_pred CEEEeccCcc
Confidence 6899998753
No 81
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=1.9e-15 Score=103.33 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=57.9
Q ss_pred EEEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.. ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.............
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4678888 77853 23566665 8999999999999999999999999999999885543110000000111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 82 ~~~~~ig~v~q~~~ 95 (287)
T PRK13641 82 KLRKKVSLVFQFPE 95 (287)
T ss_pred HHHhceEEEEeChh
Confidence 22457999999864
No 82
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=2.2e-15 Score=99.29 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=53.8
Q ss_pred EEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 7 IIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 7 ~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... . ...
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~------~~~ 72 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV---T------GPG 72 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---c------ccc
Confidence 46666 56765 45566665 889999999999999999999999999999887544211 0 123
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..+++++|.+.
T Consensus 73 ~~i~~v~q~~~ 83 (220)
T cd03293 73 PDRGYVFQQDA 83 (220)
T ss_pred CcEEEEecccc
Confidence 56899998753
No 83
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.57 E-value=1.5e-15 Score=99.99 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=55.0
Q ss_pred EEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
|+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. . ......
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~~-~-~~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI---RT-D-RKAARQ 75 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec---cc-c-hHHHhh
Confidence 356677 56765 45566655 889999999999999999999999999999987554311 11 1 112245
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.++++||++
T Consensus 76 ~i~~v~q~~ 84 (220)
T cd03263 76 SLGYCPQFD 84 (220)
T ss_pred hEEEecCcC
Confidence 699999975
No 84
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=2.1e-15 Score=98.71 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=53.3
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+.... . ..+..++
T Consensus 2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~---~-----~~~~~i~ 73 (210)
T cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD---I-----AARNRIG 73 (210)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh---H-----HHHccEE
Confidence 45666 5565545555554 8899999999999999999999999999999875543111 0 1245689
Q ss_pred EEEecC
Q psy16868 81 IVFDNT 86 (109)
Q Consensus 81 ~~fq~~ 86 (109)
+++|++
T Consensus 74 ~~~q~~ 79 (210)
T cd03269 74 YLPEER 79 (210)
T ss_pred EeccCC
Confidence 999886
No 85
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.57 E-value=1.5e-14 Score=100.98 Aligned_cols=87 Identities=23% Similarity=0.395 Sum_probs=67.0
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|.+.++.+.||++|.+.. + ++++++++|+|+||+|||+||+||..+-.+.+-+. ....+++..+.+ ...|.
T Consensus 1 M~l~~L~L~nFRNy~~~~-l-~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~Rt---~~~~~lir~~~~----~~~i~ 71 (363)
T COG1195 1 MYLLSLLLRNFRNYAELD-L-DLSPGVNVLVGENGQGKTNLLEAIYLLALGRSHRT---SRDKELIRTGAD----EAEIS 71 (363)
T ss_pred CceeeeehhhcCCcccce-e-ccCCCcEEEECCCCCchHHHHHHHHHHccccCccc---cchhHHHhcCCc----cEEEE
Confidence 889999999999999887 6 89999999999999999999999998876654332 124456666665 67777
Q ss_pred EEEecCCCCCceeEEE
Q psy16868 81 IVFDNTDHRVPGFIRC 96 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~~ 96 (109)
...|......+.....
T Consensus 72 ~~v~~~~~~~~~~~~~ 87 (363)
T COG1195 72 ARVQRKGREGTLGLQI 87 (363)
T ss_pred EEEeeccceeeeEEEe
Confidence 7777765555544444
No 86
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.57 E-value=1.3e-15 Score=100.01 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=56.2
Q ss_pred EEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
++++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+...... ........+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRL-RGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhc-ChhHHHHHHH
Confidence 567787 66753 23566665 899999999999999999999999999999987555311100 0000111245
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.++++||++.
T Consensus 81 ~i~~~~q~~~ 90 (216)
T TIGR00960 81 HIGMVFQDHR 90 (216)
T ss_pred hceEEecCcc
Confidence 7999999863
No 87
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.57 E-value=2e-15 Score=95.58 Aligned_cols=76 Identities=14% Similarity=0.262 Sum_probs=53.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++.+++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~---~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV---SFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC---CcCCHHHHHhcCe
Confidence 356677 6676655566655 899999999999999999999999999999887554211 1100011123468
Q ss_pred EEEEe
Q psy16868 80 EIVFD 84 (109)
Q Consensus 80 ~~~fq 84 (109)
+++||
T Consensus 78 ~~~~q 82 (163)
T cd03216 78 AMVYQ 82 (163)
T ss_pred EEEEe
Confidence 88887
No 88
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=2.7e-15 Score=102.60 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=59.0
Q ss_pred EEEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+.... .......
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~--~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT--DKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECC--CcCccHH
Confidence 3778888 67753 23566665 8999999999999999999999999999999885553111 0000111
Q ss_pred eeeEEEEEEEecCCCC
Q psy16868 74 VVNAYVEIVFDNTDHR 89 (109)
Q Consensus 74 ~~~~~i~~~fq~~~~~ 89 (109)
..+..|+++||++...
T Consensus 80 ~~~~~ig~v~q~~~~~ 95 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQ 95 (287)
T ss_pred HHhhceEEEecCchhc
Confidence 2356799999987433
No 89
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=2.6e-15 Score=103.48 Aligned_cols=56 Identities=16% Similarity=0.378 Sum_probs=46.1
Q ss_pred EEEEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 5 QVIIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 5 ~i~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
.|+++|+ ..|.+. .++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g 68 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIF 68 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEec
Confidence 3778888 677542 3566665 899999999999999999999999999999987543
No 90
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=2e-15 Score=102.26 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=60.3
Q ss_pred CeeeEEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC
Q psy16868 1 MYIKQVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 1 M~i~~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (109)
|+...|+++|+ +.|.+. .++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... .....
T Consensus 3 ~~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~----~~~~~ 78 (269)
T PRK13648 3 DKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI----TDDNF 78 (269)
T ss_pred CCCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----CcCCH
Confidence 44456889998 778642 2465555 899999999999999999999999999999988554311 11111
Q ss_pred ceeeEEEEEEEecCC
Q psy16868 73 RVVNAYVEIVFDNTD 87 (109)
Q Consensus 73 ~~~~~~i~~~fq~~~ 87 (109)
...+..++++||++.
T Consensus 79 ~~~~~~i~~v~q~~~ 93 (269)
T PRK13648 79 EKLRKHIGIVFQNPD 93 (269)
T ss_pred HHHHhheeEEEeChH
Confidence 123457999999874
No 91
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.57 E-value=1.8e-15 Score=100.12 Aligned_cols=80 Identities=11% Similarity=0.216 Sum_probs=56.2
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh-----ccCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL-----SDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++ .+..|.+.+.+.... ........
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~--~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY--DLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh--hcchHHHH
Confidence 356777 5676655666665 8999999999999999999999999 888998875553111 00100112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..|+++||++.
T Consensus 79 ~~~~i~~~~q~~~ 91 (227)
T cd03260 79 LRRRVGMVFQKPN 91 (227)
T ss_pred HHhhEEEEecCch
Confidence 2456899999863
No 92
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=2.4e-15 Score=102.46 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=60.3
Q ss_pred CeeeEEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC
Q psy16868 1 MYIKQVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 1 M~i~~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (109)
|+-.-++++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .....
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i----~~~~~ 76 (279)
T PRK13635 1 MKEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL----SEETV 76 (279)
T ss_pred CCCceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC----CcCcH
Confidence 44335888998 67853 33566665 899999999999999999999999999999988655311 11111
Q ss_pred ceeeEEEEEEEecCC
Q psy16868 73 RVVNAYVEIVFDNTD 87 (109)
Q Consensus 73 ~~~~~~i~~~fq~~~ 87 (109)
......|+++||++.
T Consensus 77 ~~~~~~i~~~~q~~~ 91 (279)
T PRK13635 77 WDVRRQVGMVFQNPD 91 (279)
T ss_pred HHHhhheEEEEeCHH
Confidence 122457999999874
No 93
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.57 E-value=1.7e-15 Score=98.90 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=53.3
Q ss_pred Eece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 8 IHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 8 i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. ...+..|+
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~----~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KA----KERRKSIG 74 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh---hh----HHhhcceE
Confidence 3455 55655 45566555 899999999999999999999999999999987554311 11 11245699
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
++||++.
T Consensus 75 ~~~q~~~ 81 (205)
T cd03226 75 YVMQDVD 81 (205)
T ss_pred EEecChh
Confidence 9999863
No 94
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.57 E-value=1.7e-15 Score=100.24 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=56.7
Q ss_pred EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC-Cc
Q psy16868 5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG-PR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 73 (109)
-|+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+...... .... ..
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~ 84 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQM-DEEARAK 84 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccC-CHHHHHH
Confidence 4778888 67764 23566665 899999999999999999999999999999987554311000 0000 00
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
.....++++||++.
T Consensus 85 ~~~~~i~~~~q~~~ 98 (228)
T PRK10584 85 LRAKHVGFVFQSFM 98 (228)
T ss_pred HHhheEEEEEcccc
Confidence 11256999998863
No 95
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.2e-15 Score=105.63 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=59.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|+..+..|.+.+.+.. + .. .++.++.
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~---i-~~--~~~~~r~ 92 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD---L-SH--VPPYQRP 92 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE---C-CC--CCHHHCC
Confidence 3788898 7787655555554 89999999999999999999999999999998865531 1 11 1223567
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 93 ig~vfQ~~~ 101 (377)
T PRK11607 93 INMMFQSYA 101 (377)
T ss_pred EEEEeCCCc
Confidence 999999863
No 96
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.57 E-value=1.7e-15 Score=99.79 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=54.8
Q ss_pred EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC-CCce
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-GPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (109)
|+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... ..... ....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~--~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL--SKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh--hhcCHhHHHH
Confidence 567777 66753 24566555 899999999999999999999999999999987554311 00000 0000
Q ss_pred -eeEEEEEEEecC
Q psy16868 75 -VNAYVEIVFDNT 86 (109)
Q Consensus 75 -~~~~i~~~fq~~ 86 (109)
....|+++||++
T Consensus 80 ~~~~~i~~v~q~~ 92 (221)
T TIGR02211 80 LRNKKLGFIYQFH 92 (221)
T ss_pred HHHhcEEEEeccc
Confidence 125699999985
No 97
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.56 E-value=2e-15 Score=101.72 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=59.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhh--hhcCCCCce--
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQAL--LHEGTGPRV-- 74 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~-- 74 (109)
-|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+..... +. ......
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~-~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY-ALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc-cCCHHHHH
Confidence 4889999 7787666666665 89999999999999999999999999999998755431000 11 111000
Q ss_pred --eeEEEEEEEecCC
Q psy16868 75 --VNAYVEIVFDNTD 87 (109)
Q Consensus 75 --~~~~i~~~fq~~~ 87 (109)
.+..++++||++.
T Consensus 85 ~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 85 RLLRTEWGFVHQHPR 99 (258)
T ss_pred HHhhcceEEEeeCcc
Confidence 1356999999874
No 98
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=3.3e-15 Score=95.32 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=54.2
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|....++++++ +++++|+|+||||||||+++|+|++.+..|.+.+.+.... . .. ...+..++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~---~-~~-~~~~~~i~ 76 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK---K-EP-EEVKRRIG 76 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc---c-ch-HhhhccEE
Confidence 45566 4565544555554 8899999999999999999999999999999875543111 1 11 12246799
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
++||++.
T Consensus 77 ~~~q~~~ 83 (173)
T cd03230 77 YLPEEPS 83 (173)
T ss_pred EEecCCc
Confidence 9999863
No 99
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.56 E-value=1.9e-15 Score=105.65 Aligned_cols=81 Identities=14% Similarity=0.255 Sum_probs=58.1
Q ss_pred EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
|+++|+ +.|.. ..++++++ |++++|+||||||||||+++|++++.|+.|.+.+.+....-. ........
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~-~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL-SNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHHHHH
Confidence 677888 67742 34677766 899999999999999999999999999999988655311100 01111123
Q ss_pred eEEEEEEEecCC
Q psy16868 76 NAYVEIVFDNTD 87 (109)
Q Consensus 76 ~~~i~~~fq~~~ 87 (109)
++.|+++||++.
T Consensus 81 r~~Ig~v~Q~~~ 92 (343)
T TIGR02314 81 RRQIGMIFQHFN 92 (343)
T ss_pred hcCEEEEECCcc
Confidence 567999999863
No 100
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.56 E-value=2.5e-15 Score=98.81 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=56.1
Q ss_pred EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
|+++|+ +.|.+. .++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+.... . .....
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~--~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV---K--EPAEA 76 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcc---c--CHHHH
Confidence 567777 667654 4566655 8999999999999999999999999999999875543111 1 11122
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..++++||++
T Consensus 77 ~~~i~~~~q~~ 87 (218)
T cd03266 77 RRRLGFVSDST 87 (218)
T ss_pred HhhEEEecCCc
Confidence 45799999986
No 101
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.56 E-value=1.5e-15 Score=101.36 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=56.8
Q ss_pred EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
|+++|+ ..|. +..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+...... ........+..
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKL-RGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhC-CHHHHHHHHhh
Confidence 567787 6776 555666666 889999999999999999999999999999987554311100 00000112456
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
++++||++.
T Consensus 81 i~~v~q~~~ 89 (243)
T TIGR02315 81 IGMIFQHYN 89 (243)
T ss_pred eEEEcCCCc
Confidence 899998753
No 102
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.56 E-value=1e-15 Score=99.84 Aligned_cols=78 Identities=15% Similarity=0.324 Sum_probs=52.4
Q ss_pred ece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 9 HGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 9 ~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
+|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+...............+..++++
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 81 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYL 81 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEE
Confidence 345 4565545566555 8999999999999999999999999999999875543110000000011124578999
Q ss_pred EecC
Q psy16868 83 FDNT 86 (109)
Q Consensus 83 fq~~ 86 (109)
+|++
T Consensus 82 ~q~~ 85 (206)
T TIGR03608 82 FQNF 85 (206)
T ss_pred ecch
Confidence 9875
No 103
>KOG0933|consensus
Probab=99.56 E-value=2e-15 Score=114.11 Aligned_cols=88 Identities=42% Similarity=0.651 Sum_probs=75.9
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhcc-CcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSD-ESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+|+.|.+.+|++|..++++.+|++.+++|+|-||||||++|++||+++.- ....++ ....+++++......-.++.|
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VR-A~nlqeLIyk~GQAGiTkAsV 79 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVR-ASNLQELIYKNGQAGITKASV 79 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHH-HHHHHHHHHhcCcccceeEEE
Confidence 899999999999999999889999999999999999999999999999984 445566 555788888776666668999
Q ss_pred EEEEecCCCC
Q psy16868 80 EIVFDNTDHR 89 (109)
Q Consensus 80 ~~~fq~~~~~ 89 (109)
.++|++.+..
T Consensus 80 sVvFdNtdk~ 89 (1174)
T KOG0933|consen 80 SVVFDNTDKA 89 (1174)
T ss_pred EEEecCCCcc
Confidence 9999986543
No 104
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.56 E-value=2.7e-15 Score=98.09 Aligned_cols=74 Identities=14% Similarity=0.213 Sum_probs=54.6
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ +.|.+..++++++ +++++|+||||||||||+++|+|++.+..|.+.+.+.... .. ......++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~~---~~~~~~i~ 75 (208)
T cd03268 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ---KN---IEALRRIG 75 (208)
T ss_pred EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCccc---ch---HHHHhhEE
Confidence 46676 5676555566555 8999999999999999999999999999999885543111 10 11245689
Q ss_pred EEEecC
Q psy16868 81 IVFDNT 86 (109)
Q Consensus 81 ~~fq~~ 86 (109)
++||++
T Consensus 76 ~~~q~~ 81 (208)
T cd03268 76 ALIEAP 81 (208)
T ss_pred EecCCC
Confidence 999875
No 105
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.56 E-value=3e-15 Score=99.78 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=54.1
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++ .+..|.+.+.+... .........+.
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~---~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL---LELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEec---CCCCHHHhhcc
Confidence 356677 6676655666665 8899999999999999999999995 68889887554211 11000011133
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.+++++|++.
T Consensus 78 ~i~~v~q~~~ 87 (243)
T TIGR01978 78 GLFLAFQYPE 87 (243)
T ss_pred ceEeeecccc
Confidence 4888898864
No 106
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.56 E-value=2e-15 Score=99.06 Aligned_cols=81 Identities=16% Similarity=0.285 Sum_probs=55.7
Q ss_pred EEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
|+++|+ +.| .+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+....-. ........+..
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRL-RGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC-CHHHHHHHHhh
Confidence 567777 667 3445566655 889999999999999999999999999999987544211000 00000112456
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
+++++|++.
T Consensus 81 i~~~~q~~~ 89 (214)
T TIGR02673 81 IGVVFQDFR 89 (214)
T ss_pred eEEEecChh
Confidence 899998863
No 107
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.56 E-value=3.3e-15 Score=100.82 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=56.6
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+.. + ...+..
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~---~------~~~~~~ 82 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP---L------AEARED 82 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE---H------HHhhCc
Confidence 4788898 7787666666665 88999999999999999999999999999988743321 0 112356
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||++
T Consensus 83 i~~v~q~~ 90 (257)
T PRK11247 83 TRLMFQDA 90 (257)
T ss_pred eEEEecCc
Confidence 89999985
No 108
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=2.2e-15 Score=100.31 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=55.4
Q ss_pred EEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 7 IIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 7 ~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+...... ........+..+
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~~~~i 80 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKL-KGKALRQLRRQI 80 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecccc-CHhHHHHHHhcc
Confidence 56677 56765 55666665 899999999999999999999999999999887554211000 000011124578
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 81 ~~~~q~~~ 88 (241)
T cd03256 81 GMIFQQFN 88 (241)
T ss_pred EEEcccCc
Confidence 99998763
No 109
>KOG0996|consensus
Probab=99.56 E-value=2.8e-15 Score=114.60 Aligned_cols=85 Identities=33% Similarity=0.604 Sum_probs=70.1
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce-eeEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV-VNAYV 79 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 79 (109)
|+|..|.+.||++|...+++.+|+..+++||||||||||+++++|.+++.-..+.++ ......+++.....+. ..+.|
T Consensus 84 L~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR-~~klS~LIh~S~~~~~l~SCsV 162 (1293)
T KOG0996|consen 84 LMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIR-SKKLSALIHKSDGHPNLQSCSV 162 (1293)
T ss_pred eeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHh-HHHHHHHHhccCCCCCCcceeE
Confidence 467889999999999999899999999999999999999999999999987777777 4546667765544333 34889
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++-||--
T Consensus 163 ~vhFq~i 169 (1293)
T KOG0996|consen 163 EVHFQKI 169 (1293)
T ss_pred EEeeeee
Confidence 9888864
No 110
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=2.7e-15 Score=102.14 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=55.8
Q ss_pred EEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ +.|.. ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+..............
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 667787 67753 23465555 88999999999999999999999999999998755431110000011112
Q ss_pred eeEEEEEEEecC
Q psy16868 75 VNAYVEIVFDNT 86 (109)
Q Consensus 75 ~~~~i~~~fq~~ 86 (109)
.+..|++++|++
T Consensus 83 ~~~~i~~~~q~~ 94 (280)
T PRK13649 83 IRKKVGLVFQFP 94 (280)
T ss_pred HHhheEEEeeCh
Confidence 245699999986
No 111
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.56 E-value=1.8e-15 Score=99.21 Aligned_cols=71 Identities=25% Similarity=0.287 Sum_probs=52.8
Q ss_pred Eece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868 8 IHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 8 i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.... ..+..+++
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------KERKRIGY 72 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH---------HHHhheEE
Confidence 4455 4565544565555 8899999999999999999999999999999875543111 12456899
Q ss_pred EEecCC
Q psy16868 82 VFDNTD 87 (109)
Q Consensus 82 ~fq~~~ 87 (109)
++|++.
T Consensus 73 v~q~~~ 78 (213)
T cd03235 73 VPQRRS 78 (213)
T ss_pred eccccc
Confidence 999864
No 112
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=3.5e-15 Score=101.57 Aligned_cols=78 Identities=26% Similarity=0.389 Sum_probs=58.1
Q ss_pred EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
++++|+ +.|. ...++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+... ...........
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~ 79 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI----TKENIREVRKF 79 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----CcCCHHHHHhh
Confidence 778888 7784 334566665 899999999999999999999999999999988554311 11111223467
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
++++||++.
T Consensus 80 i~~v~q~~~ 88 (277)
T PRK13652 80 VGLVFQNPD 88 (277)
T ss_pred eEEEecCcc
Confidence 999999874
No 113
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3.1e-15 Score=101.15 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=59.6
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
..|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... . .........
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~---~-~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI---Q-HYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh---h-hCCHHHHhh
Confidence 35788898 7787766677776 899999999999999999999999999999887554211 1 111111234
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 82 ~i~~v~q~~~ 91 (265)
T PRK10253 82 RIGLLAQNAT 91 (265)
T ss_pred heEEeeccCc
Confidence 6899999864
No 114
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.56 E-value=3.7e-15 Score=100.49 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=57.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... . ..........+
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~---~-~~~~~~~~~~i 78 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL---A-DWSPAELARRR 78 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc---c-cCCHHHhhhhe
Confidence 677888 6777666676665 889999999999999999999999999999987544211 1 11111123568
Q ss_pred EEEEecCCC
Q psy16868 80 EIVFDNTDH 88 (109)
Q Consensus 80 ~~~fq~~~~ 88 (109)
+++||++..
T Consensus 79 ~~~~q~~~~ 87 (258)
T PRK13548 79 AVLPQHSSL 87 (258)
T ss_pred EEEccCCcC
Confidence 999998643
No 115
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.56 E-value=2.8e-15 Score=103.09 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=59.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. . .. .....+..+
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~--~-~~--~~~~~~~~i 77 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED--V-LQ--NPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--c-cc--ChHHHHhce
Confidence 778888 7887776777766 88999999999999999999999999999998755421 1 11 111234679
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|.+.
T Consensus 78 g~~~q~~~ 85 (301)
T TIGR03522 78 GYLPEHNP 85 (301)
T ss_pred EEecCCCC
Confidence 99999863
No 116
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.1e-15 Score=99.70 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=54.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... . . ....+
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~-~-----~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV---E-G-----PGAER 72 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---C-C-----CCCcE
Confidence 567777 6676655566665 899999999999999999999999999999987544211 0 1 12347
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+++||++
T Consensus 73 ~~v~q~~ 79 (255)
T PRK11248 73 GVVFQNE 79 (255)
T ss_pred EEEeCCC
Confidence 8999875
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.56 E-value=3.3e-15 Score=99.65 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=56.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.|.+|.+.+.+... .........+..+
T Consensus 3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~---~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL---TGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec---CCCCHHHHHhcCe
Confidence 678888 6776655666665 889999999999999999999999999999988554211 1100001113468
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+++||++
T Consensus 80 ~~~~q~~ 86 (242)
T TIGR03411 80 GRKFQKP 86 (242)
T ss_pred eEecccc
Confidence 9999875
No 118
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.56 E-value=3.7e-15 Score=99.38 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=56.7
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... ..........+..+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV--NDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC--CcCChhHHHHhhce
Confidence 567777 6676655666665 899999999999999999999999999999988554311 10001111224579
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|++
T Consensus 80 ~~~~q~~ 86 (240)
T PRK09493 80 GMVFQQF 86 (240)
T ss_pred EEEeccc
Confidence 9999875
No 119
>PRK10908 cell division protein FtsE; Provisional
Probab=99.56 E-value=2.7e-15 Score=99.01 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=56.6
Q ss_pred EEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
|+++|+ +.| ....++++++ +++++|+||||||||||+++|+|++.+..|.+.+.+....-. ........+..
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL-KNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-ChhHHHHHHhh
Confidence 567788 667 4455566665 899999999999999999999999999999987554311000 00001112457
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
+++++|++.
T Consensus 81 i~~~~q~~~ 89 (222)
T PRK10908 81 IGMIFQDHH 89 (222)
T ss_pred eEEEecCcc
Confidence 899999863
No 120
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=3.9e-15 Score=95.37 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=54.6
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|.+..++++++ +++++|+||||||||||+++|+|++.+..|.+.+.+.... ............++
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~~~~~~~~i~ 79 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT--DLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc--ccchhHHHHhhcEE
Confidence 45666 4565555565554 8999999999999999999999999999999875543111 00000112346799
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
+++|++.
T Consensus 80 ~~~q~~~ 86 (178)
T cd03229 80 MVFQDFA 86 (178)
T ss_pred EEecCCc
Confidence 9998764
No 121
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=3.8e-15 Score=99.46 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=54.4
Q ss_pred EEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 7 IIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 7 ~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
+++|+ ..|.+ ..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... . .......+..+
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~-~~~~~~~~~~i 77 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI---R-EQDPVELRRKI 77 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEc---C-cCChHHhhcce
Confidence 45666 56665 45565555 899999999999999999999999999999987554311 1 11111224578
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|++
T Consensus 78 ~~~~q~~ 84 (242)
T cd03295 78 GYVIQQI 84 (242)
T ss_pred EEEccCc
Confidence 9999975
No 122
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.55 E-value=4e-15 Score=99.02 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=56.1
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... . .... .....+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i---~-~~~~-~~~~~i 76 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL---R-RAPR-AALARL 76 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc---c-cCCh-hhhhhE
Confidence 567777 6676655666665 899999999999999999999999999999987554211 1 1111 112468
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 77 ~~~~q~~~ 84 (236)
T TIGR03864 77 GVVFQQPT 84 (236)
T ss_pred EEeCCCCC
Confidence 99999753
No 123
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=3.3e-15 Score=100.49 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=57.4
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.... . .........+
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~-~~~~~~~~~i 78 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS---M-LSSRQLARRL 78 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhH---H-CCHHHHhhhe
Confidence 678888 7787766677665 8899999999999999999999999999998875542111 1 0111123468
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 79 ~~~~q~~~ 86 (255)
T PRK11231 79 ALLPQHHL 86 (255)
T ss_pred EEecccCC
Confidence 99999864
No 124
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.55 E-value=3.6e-15 Score=100.40 Aligned_cols=87 Identities=22% Similarity=0.370 Sum_probs=61.4
Q ss_pred CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhh-------
Q psy16868 1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLH------- 67 (109)
Q Consensus 1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~------- 67 (109)
|.-..|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.......
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CCCccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 34456889999 7787666666665 8999999999999999999999999999998875553111000
Q ss_pred --cCCCCceeeEEEEEEEecCC
Q psy16868 68 --EGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 68 --~~~~~~~~~~~i~~~fq~~~ 87 (109)
........+..|++++|++.
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~ 102 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFN 102 (257)
T ss_pred cccchHHHHHhhceEEEecCcc
Confidence 00001122457999999863
No 125
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=6.5e-15 Score=98.88 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=59.7
Q ss_pred CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcC
Q psy16868 1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEG 69 (109)
Q Consensus 1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~ 69 (109)
|+. .|+++|+ +.|....++++++ |++++|+||||||||||+++|+|++.+. .|.+.+.+... ....
T Consensus 1 ~~~-~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i--~~~~ 77 (253)
T PRK14267 1 MKF-AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI--YSPD 77 (253)
T ss_pred Ccc-eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc--cccc
Confidence 555 5889999 7787666677766 8999999999999999999999999863 78887554311 0000
Q ss_pred CCCceeeEEEEEEEecCC
Q psy16868 70 TGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 70 ~~~~~~~~~i~~~fq~~~ 87 (109)
......+..|+++||++.
T Consensus 78 ~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPN 95 (253)
T ss_pred cChHHHhhceeEEecCCc
Confidence 111122457999999863
No 126
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2.4e-15 Score=108.45 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=65.4
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-++++|. ++|...+++++++ |++++|+|.||||||||++.|+|.+.|+.|.+.++++. .....+.......
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~---~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKP---VAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEE---ccCCCHHHHHhCC
Confidence 4789999 9999988888777 89999999999999999999999999999999866542 2222333344678
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|.+++|+..
T Consensus 85 I~~V~QEl~ 93 (500)
T COG1129 85 IATVHQELS 93 (500)
T ss_pred cEEEeechh
Confidence 999999864
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=4.3e-15 Score=99.15 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=58.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhh--cCCCCceeeE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLH--EGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 77 (109)
|+++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+....... ........+.
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence 678888 6787666677666 8999999999999999999999999999999875553110000 0000111245
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|++++|++.
T Consensus 83 ~i~~~~q~~~ 92 (242)
T PRK11124 83 NVGMVFQQYN 92 (242)
T ss_pred heEEEecCcc
Confidence 6899999763
No 128
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.55 E-value=3.8e-15 Score=100.96 Aligned_cols=81 Identities=11% Similarity=0.218 Sum_probs=57.4
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+....-. ........+..
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAM-SRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccc-ChhhHHHHhhc
Confidence 3788888 6787665566665 889999999999999999999999999999987554211000 00001112356
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||++
T Consensus 86 i~~v~q~~ 93 (269)
T PRK11831 86 MSMLFQSG 93 (269)
T ss_pred EEEEeccc
Confidence 89999985
No 129
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=4.1e-14 Score=96.31 Aligned_cols=70 Identities=29% Similarity=0.485 Sum_probs=53.2
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
|.+|+++||++|++.. + +|++++++|+|||||||||+++||++++..... .+++..+.. ...|...
T Consensus 1 l~~l~i~nf~~~~~~~-i-~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~~--------~~~~~~~~~----~~~v~~~ 66 (276)
T cd03241 1 LLELSIKNFALIEELE-L-DFEEGLTVLTGETGAGKSILLDALSLLLGGRAS--------ADLIRSGAE----KAVVEGV 66 (276)
T ss_pred CcEEEEeCccceeeeE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCCh--------HHHhhCCCC----eEEEEEE
Confidence 4689999999997765 6 788899999999999999999999999876421 223444433 4557777
Q ss_pred EecC
Q psy16868 83 FDNT 86 (109)
Q Consensus 83 fq~~ 86 (109)
|...
T Consensus 67 ~~~~ 70 (276)
T cd03241 67 FDIS 70 (276)
T ss_pred EecC
Confidence 7654
No 130
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.55 E-value=2e-15 Score=98.79 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=52.9
Q ss_pred Eece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 8 IHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 8 i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++|+ +.|.. ..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+.. +. ..+....+..|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~-~~~~~~~~~~i 77 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD---LT-KLSLKELRRKV 77 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE---cc-cCCHHHHHhhc
Confidence 3455 45554 44455554 88999999999999999999999999999998755421 11 11111224568
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 78 ~~~~q~~~ 85 (211)
T cd03225 78 GLVFQNPD 85 (211)
T ss_pred eEEecChh
Confidence 99999863
No 131
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.55 E-value=4.9e-15 Score=99.21 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=56.2
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
++++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.|. .|.+.+.+... .........
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~--~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI--YDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEc--cccccchHH
Confidence 567777 6676655566655 8999999999999999999999999987 89887554311 100011112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..|+++||++.
T Consensus 80 ~~~~i~~v~q~~~ 92 (247)
T TIGR00972 80 LRRRVGMVFQKPN 92 (247)
T ss_pred HHhheEEEecCcc
Confidence 2457999999853
No 132
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.55 E-value=6.4e-15 Score=99.79 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=56.7
Q ss_pred EEEece-eecCC---------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC
Q psy16868 6 VIIHGF-KSYKE---------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT 70 (109)
Q Consensus 6 i~i~n~-~~~~~---------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~ 70 (109)
|+++|+ +.|.. ..++++++ +++++|+||||||||||+++|+|++.|..|.+.+.+... .. .
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~-~ 80 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL---HF-G 80 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC---CC-C
Confidence 778888 67742 23566665 899999999999999999999999999999987554311 11 1
Q ss_pred CCceeeEEEEEEEecCC
Q psy16868 71 GPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 71 ~~~~~~~~i~~~fq~~~ 87 (109)
........|+++||++.
T Consensus 81 ~~~~~~~~i~~v~q~~~ 97 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPS 97 (267)
T ss_pred chhhHhccEEEEecCch
Confidence 11122356999999864
No 133
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=4.1e-15 Score=100.58 Aligned_cols=79 Identities=13% Similarity=0.163 Sum_probs=58.6
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... .. ......+..
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~~-~~~~~~~~~ 86 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL---ES-WSSKAFARK 86 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh---hh-CCHHHHhhh
Confidence 4788888 6787666677666 899999999999999999999999999999987554311 11 111122456
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
++++||++.
T Consensus 87 i~~v~q~~~ 95 (265)
T PRK10575 87 VAYLPQQLP 95 (265)
T ss_pred eEEeccCCC
Confidence 899998753
No 134
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=5.2e-15 Score=100.84 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=58.9
Q ss_pred EEEEece-eecCC------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC
Q psy16868 5 QVIIHGF-KSYKE------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 5 ~i~i~n~-~~~~~------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~ 72 (109)
-++++|+ +.|.+ ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.. +......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~---i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD---TSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe---ccccccH
Confidence 3788888 77853 34566665 88999999999999999999999999999998855431 1111111
Q ss_pred ceeeEEEEEEEecCCC
Q psy16868 73 RVVNAYVEIVFDNTDH 88 (109)
Q Consensus 73 ~~~~~~i~~~fq~~~~ 88 (109)
...+..++++||++..
T Consensus 81 ~~~~~~i~~v~q~~~~ 96 (280)
T PRK13633 81 WDIRNKAGMVFQNPDN 96 (280)
T ss_pred HHHhhheEEEecChhh
Confidence 1234679999998743
No 135
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=8.2e-15 Score=98.85 Aligned_cols=81 Identities=14% Similarity=0.280 Sum_probs=58.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.++++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++. |..|.+.+.+.. +........
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~--~~~~~~~~~ 90 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN--ILTPKQDIA 90 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE--ccccccchH
Confidence 5788898 6787666676665 89999999999999999999999986 367888755431 110111112
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 91 ~~~~~i~~~~q~~~ 104 (260)
T PRK10744 91 LLRAKVGMVFQKPT 104 (260)
T ss_pred HHhcceEEEecCCc
Confidence 23467999999863
No 136
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=8.1e-15 Score=98.35 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=58.8
Q ss_pred CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcC
Q psy16868 1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEG 69 (109)
Q Consensus 1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~ 69 (109)
|++ .++++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|+..+ ..|.+.+.+... ....
T Consensus 1 ~~~-~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i--~~~~ 77 (251)
T PRK14270 1 MKI-KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI--YDKD 77 (251)
T ss_pred Ccc-EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec--cccc
Confidence 444 4788898 6787666666665 899999999999999999999999874 578877544211 1011
Q ss_pred CCCceeeEEEEEEEecCC
Q psy16868 70 TGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 70 ~~~~~~~~~i~~~fq~~~ 87 (109)
......+..++++||++.
T Consensus 78 ~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPN 95 (251)
T ss_pred ccHHHHHhheEEEecCCC
Confidence 111122457999999863
No 137
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.55 E-value=8.8e-16 Score=98.53 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=57.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCCCCCceeEEEeecceee
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDL 103 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~~ 103 (109)
+...+|+|.||||||||.++|+|.+.|++|.+.+++... .+. +...+...|.|+||+|+..+.++.++.+.....
T Consensus 39 ~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L--~~~--Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~P 113 (267)
T COG4167 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL--HFG--DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFP 113 (267)
T ss_pred CcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc--ccc--chHhhhhheeeeecCCccccChhhhhhhHhcch
Confidence 788999999999999999999999999999988665321 111 122235679999999999998877766554433
No 138
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.54 E-value=3.9e-15 Score=99.93 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=57.5
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhh-hcCCCCc----e
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALL-HEGTGPR----V 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~-~~~~~~~----~ 74 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+...... ....... .
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRL 83 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHh
Confidence 678888 6777655566665 899999999999999999999999999999987544210000 0011110 1
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
....|++++|++.
T Consensus 84 ~~~~i~~~~q~~~ 96 (253)
T TIGR02323 84 MRTEWGFVHQNPR 96 (253)
T ss_pred hhcceEEEEeCcc
Confidence 1346899999864
No 139
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.54 E-value=5.9e-15 Score=96.08 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=56.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|+..+..|.+.+.+... .. .....+..+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~---~~--~~~~~~~~i 76 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI---KK--DLCTYQKQL 76 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc---cc--CHHHHHhhe
Confidence 567777 6676666676666 899999999999999999999999999999987554311 11 111224568
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|.+
T Consensus 77 ~~~~q~~ 83 (200)
T PRK13540 77 CFVGHRS 83 (200)
T ss_pred EEecccc
Confidence 8888864
No 140
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.6e-15 Score=104.45 Aligned_cols=83 Identities=24% Similarity=0.285 Sum_probs=56.5
Q ss_pred EEEece-eecC----CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc----cCcccccccchhhhhhhcCC-
Q psy16868 6 VIIHGF-KSYK----EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS----DESTSLRHSDSRQALLHEGT- 70 (109)
Q Consensus 6 i~i~n~-~~~~----~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~----~~~~~~~~~~~~~~~~~~~~- 70 (109)
|+++|+ +.|. ...++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+.. +.....
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~--i~~~~~~ 81 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID--LLRLSPR 81 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE--CCcCCHH
Confidence 778888 6773 334566665 89999999999999999999999986 467877755431 110000
Q ss_pred C-CceeeEEEEEEEecCCCCC
Q psy16868 71 G-PRVVNAYVEIVFDNTDHRV 90 (109)
Q Consensus 71 ~-~~~~~~~i~~~fq~~~~~~ 90 (109)
. .......|+++||++...+
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l 102 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCL 102 (330)
T ss_pred HHHHHhCCCEEEEecCcchhc
Confidence 0 0011346999999986443
No 141
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.54 E-value=8.1e-15 Score=98.58 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=54.8
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+ ...
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---------------~~~ 68 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------------KLR 68 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---------------ccC
Confidence 4788998 7787666666655 899999999999999999999999999999876321 235
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
++++||++.
T Consensus 69 i~~v~q~~~ 77 (251)
T PRK09544 69 IGYVPQKLY 77 (251)
T ss_pred EEEeccccc
Confidence 888888753
No 142
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=3.2e-15 Score=104.51 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=57.1
Q ss_pred EEEece-eecC----CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 6 VIIHGF-KSYK----EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 6 i~i~n~-~~~~----~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
|+++|+ ++|. ...++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+....-. ........
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~-~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAL-SEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcC-CHHHHHHH
Confidence 567888 6776 245566665 899999999999999999999999999999987554311000 00000112
Q ss_pred eEEEEEEEecCC
Q psy16868 76 NAYVEIVFDNTD 87 (109)
Q Consensus 76 ~~~i~~~fq~~~ 87 (109)
+..|+++||++.
T Consensus 81 ~~~ig~v~q~~~ 92 (343)
T PRK11153 81 RRQIGMIFQHFN 92 (343)
T ss_pred hcCEEEEeCCCc
Confidence 467999999864
No 143
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=5.4e-15 Score=100.92 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=60.6
Q ss_pred eeEEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 3 IKQVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 3 i~~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
-.-|+++|+ ..|. ...++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.... .........
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~--~~~~~~~~~ 80 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID--YSRKGLMKL 80 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECC--CCcchHHHH
Confidence 345788998 7785 344666665 8999999999999999999999999999999885553211 011111123
Q ss_pred eEEEEEEEecCCC
Q psy16868 76 NAYVEIVFDNTDH 88 (109)
Q Consensus 76 ~~~i~~~fq~~~~ 88 (109)
+..|+++||++..
T Consensus 81 ~~~ig~v~q~~~~ 93 (283)
T PRK13636 81 RESVGMVFQDPDN 93 (283)
T ss_pred HhhEEEEecCcch
Confidence 4679999998743
No 144
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=8.3e-15 Score=100.22 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=58.8
Q ss_pred eEEEEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhh-hhcCCC
Q psy16868 4 KQVIIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQAL-LHEGTG 71 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~-~~~~~~ 71 (109)
..|+++|+ +.|.+. .++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+..... ......
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 46888998 778653 2566665 88999999999999999999999999999998754421100 000001
Q ss_pred CceeeEEEEEEEecCC
Q psy16868 72 PRVVNAYVEIVFDNTD 87 (109)
Q Consensus 72 ~~~~~~~i~~~fq~~~ 87 (109)
....+..|++++|++.
T Consensus 85 ~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 85 VKRLRKEIGLVFQFPE 100 (289)
T ss_pred HHHHhccEEEEEeCcc
Confidence 1122457999999863
No 145
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=3.4e-15 Score=101.73 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=58.4
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+... ........
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i----~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL----TEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC----CcCcHHHH
Confidence 4788888 77753 23566665 899999999999999999999999999999988555311 11111223
Q ss_pred eEEEEEEEecCC
Q psy16868 76 NAYVEIVFDNTD 87 (109)
Q Consensus 76 ~~~i~~~fq~~~ 87 (109)
+..++++||++.
T Consensus 80 ~~~i~~v~q~~~ 91 (279)
T PRK13650 80 RHKIGMVFQNPD 91 (279)
T ss_pred HhhceEEEcChH
Confidence 457999999874
No 146
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=4.8e-15 Score=99.56 Aligned_cols=79 Identities=14% Similarity=0.249 Sum_probs=57.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-++++|+ +.|.+..++.+++ |++++|+||||||||||+++|+|++.+..|.+.+.+.. +.........+..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~---~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH---IEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE---CCCCCHHHHHhcC
Confidence 3778888 6787666676665 89999999999999999999999999999998755431 1110000111335
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||++
T Consensus 82 i~~~~q~~ 89 (255)
T PRK11300 82 VVRTFQHV 89 (255)
T ss_pred eEEeccCc
Confidence 78888875
No 147
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=5.5e-15 Score=98.10 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=57.1
Q ss_pred EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcC-CCCce
Q psy16868 6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEG-TGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 74 (109)
|+++|+ +.|.+. .++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... .... .....
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL--TLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc--ccCCHHHHHH
Confidence 567888 677654 5666665 899999999999999999999999999999987554311 1000 00011
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..|++++|++.
T Consensus 80 ~~~~i~~~~q~~~ 92 (233)
T cd03258 80 ARRRIGMIFQHFN 92 (233)
T ss_pred HHhheEEEccCcc
Confidence 2456899998863
No 148
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=9.8e-15 Score=97.86 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=57.7
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.++++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++.+ ..|.+.+.+... . .....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i---~-~~~~~ 78 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI---F-KMDVI 78 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEEC---C-cCCHH
Confidence 4788888 6787666666665 889999999999999999999999874 578877554311 1 11112
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 79 ~~~~~i~~v~q~~~ 92 (250)
T PRK14247 79 ELRRRVQMVFQIPN 92 (250)
T ss_pred HHhccEEEEeccCc
Confidence 23467999999864
No 149
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.54 E-value=1.2e-14 Score=94.75 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=49.7
Q ss_pred EEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 7 IIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 7 ~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
+++|+ +.|.+. .++++++ |++++|+||||||||||+++|+|+..+..|.+.+.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------------- 66 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------- 66 (204)
T ss_pred EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---------------
Confidence 46666 566543 4566665 899999999999999999999999999999876332
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 67 --~i~~~~q~~ 75 (204)
T cd03250 67 --SIAYVSQEP 75 (204)
T ss_pred --EEEEEecCc
Confidence 478888775
No 150
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.54 E-value=4e-15 Score=108.54 Aligned_cols=81 Identities=12% Similarity=0.251 Sum_probs=59.2
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. +.........+.
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~---i~~~~~~~~~~~ 80 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN---YNKLDHKLAAQL 80 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE---CCCCCHHHHHHC
Confidence 34889999 7887766677666 88999999999999999999999999999998755421 111000001124
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 81 ~i~~v~q~~~ 90 (510)
T PRK09700 81 GIGIIYQELS 90 (510)
T ss_pred CeEEEeeccc
Confidence 6999999853
No 151
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-14 Score=98.74 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=58.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+... ........
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i--~~~~~~~~ 96 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI--YDPRLDVV 96 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC--cccccchH
Confidence 5788898 7787666666665 899999999999999999999999874 678887554311 10001111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..++++||++.
T Consensus 97 ~~~~~i~~v~q~~~ 110 (267)
T PRK14235 97 ELRARVGMVFQKPN 110 (267)
T ss_pred HHhhceEEEecCCC
Confidence 23467999999863
No 152
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=4.4e-15 Score=97.27 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=53.4
Q ss_pred EEece-eecCCCeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
+++|+ +.|.+..++++++ .++++|+||||||||||+++|+|++.+..|.+.+.+... . ... ...+..+++
T Consensus 2 ~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~-~~~-~~~~~~i~~ 76 (211)
T cd03264 2 QLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV---L-KQP-QKLRRRIGY 76 (211)
T ss_pred EEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcc---c-cch-HHHHhheEE
Confidence 45666 5565545555554 339999999999999999999999999999987554311 1 111 122467899
Q ss_pred EEecCC
Q psy16868 82 VFDNTD 87 (109)
Q Consensus 82 ~fq~~~ 87 (109)
++|++.
T Consensus 77 ~~q~~~ 82 (211)
T cd03264 77 LPQEFG 82 (211)
T ss_pred ecCCCc
Confidence 999864
No 153
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.4e-15 Score=98.13 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=59.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+.+|+ .+...+.++++++ |++++|+||||+||||||++|+|-+.|+.|.+.+++. ..+..........-
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~----~l~~~~~~~lA~~r 77 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGV----PLNSWPPEELARHR 77 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCc----ChhhCCHHHHHHHh
Confidence 566676 5556666566555 8999999999999999999999999999999875542 22222222223345
Q ss_pred EEEEecCCCCCceeE
Q psy16868 80 EIVFDNTDHRVPGFI 94 (109)
Q Consensus 80 ~~~fq~~~~~~~~~~ 94 (109)
++++|+..-.|++.+
T Consensus 78 aVlpQ~s~laFpFtv 92 (259)
T COG4559 78 AVLPQNSSLAFPFTV 92 (259)
T ss_pred hhcccCcccccceEH
Confidence 667777766666543
No 154
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.54 E-value=4.9e-15 Score=94.52 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=53.2
Q ss_pred EEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 7 IIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 7 ~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+++|+ ..|.+ ..++++++ +++++|+||||||||||+++|+|++.+..|.+.+.+... ........+..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~----~~~~~~~~~~~ 77 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI----SQWDPNELGDH 77 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEc----ccCCHHHHHhh
Confidence 45666 55653 23455544 889999999999999999999999999999987554211 11111122457
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||++
T Consensus 78 i~~~~q~~ 85 (173)
T cd03246 78 VGYLPQDD 85 (173)
T ss_pred eEEECCCC
Confidence 89999876
No 155
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.54 E-value=4.2e-15 Score=108.24 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=58.3
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~---~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV---TFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---CCCCHHHHHhCC
Confidence 3788998 7887766677666 899999999999999999999999999999987554211 000000111346
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||++
T Consensus 81 i~~v~q~~ 88 (501)
T PRK10762 81 IGIIHQEL 88 (501)
T ss_pred EEEEEcch
Confidence 89999985
No 156
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=7.2e-15 Score=99.70 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=57.6
Q ss_pred EEEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
-++++|+ +.|. ...++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... ........+
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i----~~~~~~~~~ 82 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI----SKENLKEIR 82 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec----CcCCHHHHh
Confidence 3778888 6774 334566655 889999999999999999999999999999987554311 111111224
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 83 ~~i~~v~q~~~ 93 (271)
T PRK13632 83 KKIGIIFQNPD 93 (271)
T ss_pred cceEEEEeCHH
Confidence 57999999863
No 157
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-14 Score=97.96 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=56.2
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+... ........
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i--~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI--YDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc--cccccCHH
Confidence 4778888 6787655666665 89999999999999999999999864 4678877554311 00001111
Q ss_pred eeeEEEEEEEecC
Q psy16868 74 VVNAYVEIVFDNT 86 (109)
Q Consensus 74 ~~~~~i~~~fq~~ 86 (109)
..+..|++++|++
T Consensus 84 ~~~~~i~~v~q~~ 96 (253)
T PRK14242 84 ELRRRVGMVFQKP 96 (253)
T ss_pred HHhhcEEEEecCC
Confidence 2245799999985
No 158
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.54 E-value=4.7e-15 Score=107.64 Aligned_cols=95 Identities=19% Similarity=0.244 Sum_probs=70.0
Q ss_pred EEEece-eecCC-----------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc
Q psy16868 6 VIIHGF-KSYKE-----------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE 68 (109)
Q Consensus 6 i~i~n~-~~~~~-----------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~ 68 (109)
++++|+ +.|.. ..++++++ |+..+|+|++|||||||.++|++++.|+.|.+.+.+.. ....
T Consensus 281 l~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~--~~~~ 358 (539)
T COG1123 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD--LDLT 358 (539)
T ss_pred eEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc--cccc
Confidence 567777 55652 23455555 89999999999999999999999999999998866643 2222
Q ss_pred CCCCceeeEEEEEEEecCCCCCceeEEEeeccee
Q psy16868 69 GTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVD 102 (109)
Q Consensus 69 ~~~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~ 102 (109)
.......++.+.++||+|...+.+.........+
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence 3333345678999999999998877766554433
No 159
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.53 E-value=2.8e-15 Score=98.30 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=54.3
Q ss_pred EEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 7 IIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 7 ~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+...... ........+..+
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~i 80 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDL-RGRAIPYLRRKI 80 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccC-CHHHHHHHHHhe
Confidence 45666 56643 34566555 889999999999999999999999999999987544211000 000001124579
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 81 ~~v~q~~~ 88 (214)
T cd03292 81 GVVFQDFR 88 (214)
T ss_pred EEEecCch
Confidence 99999863
No 160
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.53 E-value=5.6e-15 Score=98.97 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=57.5
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc-C---CCCcee
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE-G---TGPRVV 75 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 75 (109)
++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+........ . ......
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQL 83 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHh
Confidence 788888 6787666666665 88999999999999999999999999999988754431110000 0 001122
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..+++++|++
T Consensus 84 ~~~i~~v~q~~ 94 (250)
T PRK11264 84 RQHVGFVFQNF 94 (250)
T ss_pred hhhEEEEecCc
Confidence 45789999985
No 161
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=6.4e-15 Score=100.17 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=57.0
Q ss_pred EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
|+++|+ +.|. ...++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+.... ............
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~--~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK--YDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc--cccchHHHHHhh
Confidence 567777 6675 334566665 8999999999999999999999999999999885553111 011111122467
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 80 i~~v~q~~~ 88 (275)
T PRK13639 80 VGIVFQNPD 88 (275)
T ss_pred eEEEeeChh
Confidence 999999864
No 162
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.2e-14 Score=98.36 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=56.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
++++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+.. +.........
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~~~ 99 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN--ILDSNINVVN 99 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE--cccccccHHH
Confidence 678888 6787766677665 89999999999999999999999864 577887754421 1100111112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..++++||++.
T Consensus 100 ~~~~i~~v~q~~~ 112 (268)
T PRK14248 100 LRREIGMVFQKPN 112 (268)
T ss_pred HhccEEEEecCCc
Confidence 2457999999863
No 163
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=4.9e-15 Score=98.09 Aligned_cols=78 Identities=14% Similarity=0.304 Sum_probs=56.3
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+... .. ......+.
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~~-~~~~~~~~ 77 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI---RD-ISRKSLRS 77 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH---HH-cCHHHHhh
Confidence 4778888 67754 33566555 889999999999999999999999999999987554211 11 11112245
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.++++||++
T Consensus 78 ~i~~~~q~~ 86 (229)
T cd03254 78 MIGVVLQDT 86 (229)
T ss_pred hEEEecCCc
Confidence 689999875
No 164
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=9.1e-15 Score=98.48 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=58.3
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCC
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~ 72 (109)
..++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+ ..|.+.+.+... .......
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~--~~~~~~~ 80 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL--YGPGVDP 80 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec--cccccCh
Confidence 46889999 7787666666665 899999999999999999999999874 588887544211 0000111
Q ss_pred ceeeEEEEEEEecCC
Q psy16868 73 RVVNAYVEIVFDNTD 87 (109)
Q Consensus 73 ~~~~~~i~~~fq~~~ 87 (109)
...+..++++||++.
T Consensus 81 ~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 81 VAVRRTIGMVFQRPN 95 (258)
T ss_pred HHHhcceEEEccccc
Confidence 122457999999753
No 165
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.2e-14 Score=97.63 Aligned_cols=81 Identities=11% Similarity=0.188 Sum_probs=57.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~ 73 (109)
-|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+. .|.+.+.+... ........
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i--~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI--YSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEec--ccccccHH
Confidence 3778888 6777655666665 8999999999999999999999999864 78877544311 00011111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|++++|++.
T Consensus 85 ~~~~~i~~v~q~~~ 98 (254)
T PRK14273 85 ELRRKIGMVFQTPN 98 (254)
T ss_pred HHhhceEEEeeccc
Confidence 23467999999864
No 166
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.53 E-value=6.4e-15 Score=100.14 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=55.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC--------cccccccchhhhhhhcCCC
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE--------STSLRHSDSRQALLHEGTG 71 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~--------~~~~~~~~~~~~~~~~~~~ 71 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+. .|.+.+.+... . ...
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~---~-~~~ 77 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL---A-AID 77 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc---c-cCC
Confidence 677888 6777666676666 8899999999999999999999999887 78777544211 0 111
Q ss_pred CceeeEEEEEEEecCC
Q psy16868 72 PRVVNAYVEIVFDNTD 87 (109)
Q Consensus 72 ~~~~~~~i~~~fq~~~ 87 (109)
.......++++||++.
T Consensus 78 ~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 78 APRLARLRAVLPQAAQ 93 (272)
T ss_pred HHHHHhhcEEecccCC
Confidence 1112345788998864
No 167
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.53 E-value=3.1e-14 Score=111.01 Aligned_cols=89 Identities=22% Similarity=0.354 Sum_probs=63.0
Q ss_pred CeeeEEEEeceeecCCCeeEecCC------CCceEEEecCCCCcchHHHHHHHhhccCccccccc-chhhhhhhcCCCCc
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFD------KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS-DSRQALLHEGTGPR 73 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~------~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~-~~~~~~~~~~~~~~ 73 (109)
|++.+|+++||.+|.+...+ +|+ +++++|+|||||||||||+||++++++........ ....+++..+.
T Consensus 1 Mk~~~l~~~nf~s~~~~~~i-df~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~--- 76 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKI-DFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDT--- 76 (1047)
T ss_pred CcceEEEeecceeEcCCceE-EEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCC---
Confidence 99999999999999765445 553 68999999999999999999999998754432101 11122222222
Q ss_pred eeeEEEEEEEecCCCCCceeE
Q psy16868 74 VVNAYVEIVFDNTDHRVPGFI 94 (109)
Q Consensus 74 ~~~~~i~~~fq~~~~~~~~~~ 94 (109)
....|.+.|......|.+.+
T Consensus 77 -~~~~v~~~F~~~~~~y~~~~ 96 (1047)
T PRK10246 77 -AECLAEVEFEVKGEAYRAFW 96 (1047)
T ss_pred -cceEEEEEEEECCeEEEEEe
Confidence 26788999977666665554
No 168
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=4.3e-15 Score=94.63 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=53.0
Q ss_pred EEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 7 IIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 7 ~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+++|+ +.|.+. .++++++ +++++|+||||||||||+++|+|++.+..|.+.+.+.... .......+..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~----~~~~~~~~~~ 77 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR----DLDLESLRKN 77 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh----hcCHHHHHhh
Confidence 45666 556543 3454444 8999999999999999999999999999998875543111 1111122456
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||++
T Consensus 78 i~~~~~~~ 85 (171)
T cd03228 78 IAYVPQDP 85 (171)
T ss_pred EEEEcCCc
Confidence 89999876
No 169
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.53 E-value=4.8e-15 Score=99.50 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=44.4
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (252)
T TIGR03005 2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG 61 (252)
T ss_pred EEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 56676 5666555566555 899999999999999999999999999999887554
No 170
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=4.6e-15 Score=98.49 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=53.4
Q ss_pred EEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 7 IIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 7 ~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+++|+ ..|.+. .++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. ......+..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~-~~~~~~~~~ 77 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV---RD-YTLASLRRQ 77 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh---hh-CCHHHHHhh
Confidence 46666 566543 3455544 889999999999999999999999999999987554311 11 111122456
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
++++||++
T Consensus 78 i~~~~q~~ 85 (234)
T cd03251 78 IGLVSQDV 85 (234)
T ss_pred EEEeCCCC
Confidence 88998875
No 171
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.53 E-value=7.1e-15 Score=98.91 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=56.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.... ..........+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~----~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH----GLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc----cCCHHHHhhhe
Confidence 466777 6676666666665 8999999999999999999999999999998875443111 11111123468
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 78 ~~~~q~~~ 85 (256)
T TIGR03873 78 ALVEQDSD 85 (256)
T ss_pred EEecccCc
Confidence 89998863
No 172
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.53 E-value=9.1e-15 Score=95.29 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=54.5
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... .. .....+..++
T Consensus 2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~~--~~~~~~~~i~ 76 (201)
T cd03231 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL---DF--QRDSIARGLL 76 (201)
T ss_pred EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec---cc--ccHHhhhheE
Confidence 45666 5566555566655 899999999999999999999999999999987554311 11 1112345788
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
+++|.+.
T Consensus 77 ~~~q~~~ 83 (201)
T cd03231 77 YLGHAPG 83 (201)
T ss_pred Eeccccc
Confidence 9988753
No 173
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=8.7e-15 Score=101.49 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=59.1
Q ss_pred EEEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhh------
Q psy16868 5 QVIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLH------ 67 (109)
Q Consensus 5 ~i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~------ 67 (109)
.|+++|+ ..|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+....-..
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 3778888 67753 23566665 8999999999999999999999999999999886542110000
Q ss_pred -c---C--CCCceeeEEEEEEEecCCC
Q psy16868 68 -E---G--TGPRVVNAYVEIVFDNTDH 88 (109)
Q Consensus 68 -~---~--~~~~~~~~~i~~~fq~~~~ 88 (109)
. . ......+..|+++||++..
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~ 127 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEY 127 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchh
Confidence 0 0 0112235679999998743
No 174
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.53 E-value=1.8e-14 Score=96.91 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=56.6
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc----CcccccccchhhhhhhcCCCCce
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD----ESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
.|+++|+ +.| +..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+.... ....
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~------~~~~ 76 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA------PCAL 76 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc------cccc
Confidence 5888998 677 444566655 899999999999999999999999988 8888875443111 1111
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
....|+++||++.
T Consensus 77 ~~~~i~~v~q~~~ 89 (254)
T PRK10418 77 RGRKIATIMQNPR 89 (254)
T ss_pred ccceEEEEecCCc
Confidence 2356999999864
No 175
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.4e-14 Score=97.07 Aligned_cols=80 Identities=15% Similarity=0.262 Sum_probs=56.8
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+ ..|.+.+.+.. +.......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED---IYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE---cccccchH
Confidence 4778888 6787666677666 899999999999999999999999885 36777644421 10011111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..++++||++.
T Consensus 80 ~~~~~i~~~~q~~~ 93 (249)
T PRK14253 80 DLRIKVGMVFQKPN 93 (249)
T ss_pred HHHhheeEEecCCC
Confidence 23456999999863
No 176
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.53 E-value=9.7e-15 Score=95.32 Aligned_cols=76 Identities=8% Similarity=0.066 Sum_probs=54.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|....++.+++ +++++|+|+||||||||+++|+|++.|..|.+.+.+.... .. .......+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~---~~--~~~~~~~~ 76 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR---RQ--RDEYHQDL 76 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc---cc--hHHhhhhe
Confidence 566777 6676655566665 8899999999999999999999999999999875543111 00 01123457
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|.+
T Consensus 77 ~~~~~~~ 83 (204)
T PRK13538 77 LYLGHQP 83 (204)
T ss_pred EEeCCcc
Confidence 8888764
No 177
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.53 E-value=1.5e-14 Score=95.15 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=56.2
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++.+++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... ... .....+
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i---~~~----~~~~~i 84 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---TRG----DRSRFM 84 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc---cch----hhhhce
Confidence 778888 6787666666665 899999999999999999999999999999987554311 111 123468
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|.+
T Consensus 85 ~~~~q~~ 91 (214)
T PRK13543 85 AYLGHLP 91 (214)
T ss_pred EEeecCc
Confidence 8888864
No 178
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.1e-14 Score=96.42 Aligned_cols=82 Identities=17% Similarity=0.357 Sum_probs=58.2
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--c---CcccccccchhhhhhhcCCCC
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--D---ESTSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~---~~~~~~~~~~~~~~~~~~~~~ 72 (109)
..|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++. | ..|.+.+.+.. +.......
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~--i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD--IYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEE--cccccCCh
Confidence 45888998 7787666677766 89999999999999999999999985 3 47887755431 11111111
Q ss_pred ceeeEEEEEEEecCC
Q psy16868 73 RVVNAYVEIVFDNTD 87 (109)
Q Consensus 73 ~~~~~~i~~~fq~~~ 87 (109)
...+..++++||++.
T Consensus 81 ~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 81 VSIRRRVGMVFQKPN 95 (252)
T ss_pred HHhhccEEEEecCCC
Confidence 123567999999864
No 179
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.52 E-value=8e-15 Score=107.02 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=58.3
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. +.........+..
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP---CARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE---CCCCCHHHHHhCC
Confidence 3788998 7787766676665 88999999999999999999999999999998754421 1110000111245
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 88 i~~v~q~~~ 96 (510)
T PRK15439 88 IYLVPQEPL 96 (510)
T ss_pred EEEEeccCc
Confidence 899999863
No 180
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4.4e-15 Score=103.23 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=59.1
Q ss_pred EEEEece-eecCC----------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc
Q psy16868 5 QVIIHGF-KSYKE----------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE 68 (109)
Q Consensus 5 ~i~i~n~-~~~~~----------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~ 68 (109)
-|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+....-. .
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~-~ 83 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA-D 83 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC-C
Confidence 3678888 66742 34566665 899999999999999999999999999999987655311000 0
Q ss_pred CCCCceeeEEEEEEEecCCCCC
Q psy16868 69 GTGPRVVNAYVEIVFDNTDHRV 90 (109)
Q Consensus 69 ~~~~~~~~~~i~~~fq~~~~~~ 90 (109)
.......+..|+++||++...+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhc
Confidence 0011122457999999985443
No 181
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.52 E-value=6.1e-15 Score=94.43 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=53.4
Q ss_pred EEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 7 IIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 7 ~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+++|+ +.|... .++++++ |++++|+||||||||||+++|+|+..+..|.+.+.+...... ....+..
T Consensus 2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-----~~~~~~~ 76 (178)
T cd03247 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-----EKALSSL 76 (178)
T ss_pred EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-----HHHHHhh
Confidence 45666 556543 3455554 899999999999999999999999999999987555321111 1112456
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
+++++|++
T Consensus 77 i~~~~q~~ 84 (178)
T cd03247 77 ISVLNQRP 84 (178)
T ss_pred EEEEccCC
Confidence 89999875
No 182
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4.5e-15 Score=103.16 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=57.0
Q ss_pred EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc----CcccccccchhhhhhhcCCC
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD----ESTSLRHSDSRQALLHEGTG 71 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~----~~~~~~~~~~~~~~~~~~~~ 71 (109)
|+++|+ ..|.. ..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+....-......
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 788888 67765 34677766 899999999999999999999999973 67777755431100000000
Q ss_pred CceeeEEEEEEEecCCCCC
Q psy16868 72 PRVVNAYVEIVFDNTDHRV 90 (109)
Q Consensus 72 ~~~~~~~i~~~fq~~~~~~ 90 (109)
.......|+++||++...+
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l 102 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSL 102 (326)
T ss_pred HHHhCCCEEEEecCchhhc
Confidence 0011246999999975433
No 183
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.4e-14 Score=97.09 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=56.2
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+... .........
T Consensus 4 l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~--~~~~~~~~~ 81 (250)
T PRK14262 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI--YDPQLDVTE 81 (250)
T ss_pred EEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc--ccchhhHHH
Confidence 778888 6777656666665 899999999999999999999999873 678877544211 000011112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..++++||++.
T Consensus 82 ~~~~i~~~~q~~~ 94 (250)
T PRK14262 82 YRKKVGMVFQKPT 94 (250)
T ss_pred hhhhEEEEecCCc
Confidence 2457999999863
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.1e-14 Score=98.78 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=56.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++. |..|.+.+.+.. +........
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~--i~~~~~~~~ 90 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTD--LYDPRVDPV 90 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE--cccccCCHH
Confidence 3778888 6787666666665 89999999999999999999999986 477887754421 100001111
Q ss_pred eeeEEEEEEEecC
Q psy16868 74 VVNAYVEIVFDNT 86 (109)
Q Consensus 74 ~~~~~i~~~fq~~ 86 (109)
..+..|+++||++
T Consensus 91 ~~~~~i~~v~q~~ 103 (269)
T PRK14259 91 EVRRRIGMVFQQP 103 (269)
T ss_pred HHhhceEEEccCC
Confidence 2245699999986
No 185
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.52 E-value=1.1e-14 Score=94.90 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=53.1
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|+. .|..|.+.+.+... .........+..
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~---~~~~~~~~~~~~ 78 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI---TDLPPEERARLG 78 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEEC---CcCCHHHHhhCc
Confidence 45666 5666555566665 8899999999999999999999994 68889887554311 110111111345
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
+++++|.+
T Consensus 79 i~~v~q~~ 86 (200)
T cd03217 79 IFLAFQYP 86 (200)
T ss_pred EEEeecCh
Confidence 89999875
No 186
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.8e-14 Score=97.83 Aligned_cols=80 Identities=14% Similarity=0.320 Sum_probs=56.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+.. +.........
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--~~~~~~~~~~ 102 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN--IFDKSYSVEE 102 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEE--cccccccHHH
Confidence 778888 6777655566665 89999999999999999999999987 578888754421 1100111112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..++++||++.
T Consensus 103 ~~~~i~~v~q~~~ 115 (271)
T PRK14238 103 LRTNVGMVFQKPN 115 (271)
T ss_pred HhhhEEEEecCCc
Confidence 2457999999863
No 187
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.52 E-value=1.1e-14 Score=94.56 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=53.4
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ +.|....++++++ +++++|+||||||||||+++|+|++.|..|.+.+.+.... . .. ......++
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~---~-~~-~~~~~~i~ 76 (198)
T TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA---E-QR-DEPHRNIL 76 (198)
T ss_pred EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc---c-ch-HHhhhheE
Confidence 45666 5666655566655 8999999999999999999999999999998875543111 1 01 11235688
Q ss_pred EEEecC
Q psy16868 81 IVFDNT 86 (109)
Q Consensus 81 ~~fq~~ 86 (109)
+++|.+
T Consensus 77 ~~~q~~ 82 (198)
T TIGR01189 77 YLGHLP 82 (198)
T ss_pred EeccCc
Confidence 888764
No 188
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.51 E-value=1.2e-14 Score=95.04 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=57.2
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.++++|+ ..|.+ ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... . .......+
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~-~~~~~~~~ 81 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI---S-TIPLEDLR 81 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEh---H-HCCHHHHH
Confidence 5778888 66764 24566655 899999999999999999999999999999987555311 1 11111224
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|+++||++
T Consensus 82 ~~i~~v~q~~ 91 (207)
T cd03369 82 SSLTIIPQDP 91 (207)
T ss_pred hhEEEEecCC
Confidence 5799999986
No 189
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.2e-14 Score=96.73 Aligned_cols=81 Identities=16% Similarity=0.340 Sum_probs=56.6
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
-|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+.. +........
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~--~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN--ILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE--ccccccCHH
Confidence 4788888 6777655666655 899999999999999999999999863 47887755431 110011111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 90 ~~~~~i~~v~q~~~ 103 (259)
T PRK14274 90 ELRKNIGMVFQKGN 103 (259)
T ss_pred HHhhceEEEecCCc
Confidence 22457999999853
No 190
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.51 E-value=2.3e-14 Score=89.11 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=41.9
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH 58 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~ 58 (109)
+++|+ ..|.+..++++++ +++++|+|+||||||||+++|+|++.+..|.+.+
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 59 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 45666 4565545555554 8999999999999999999999999999998763
No 191
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.1e-14 Score=97.25 Aligned_cols=80 Identities=13% Similarity=0.255 Sum_probs=56.8
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+.. +........
T Consensus 20 ~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID--INRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE--cccccCChH
Confidence 4778888 6777666666665 89999999999999999999999986 367887754421 110011111
Q ss_pred eeeEEEEEEEecC
Q psy16868 74 VVNAYVEIVFDNT 86 (109)
Q Consensus 74 ~~~~~i~~~fq~~ 86 (109)
..+..|+++||++
T Consensus 98 ~~~~~i~~v~q~~ 110 (267)
T PRK14237 98 EMRKHIGMVFQRP 110 (267)
T ss_pred HHhcceEEEecCC
Confidence 2255799999975
No 192
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.2e-14 Score=97.04 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=56.2
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+ .+|.+.+.+.............
T Consensus 16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 4778888 6787656666665 899999999999999999999999874 5777764432111100000111
Q ss_pred eeeEEEEEEEecC
Q psy16868 74 VVNAYVEIVFDNT 86 (109)
Q Consensus 74 ~~~~~i~~~fq~~ 86 (109)
..+..|++++|++
T Consensus 96 ~~~~~i~~~~q~~ 108 (265)
T PRK14252 96 EVRMRISMVFQKP 108 (265)
T ss_pred HHhccEEEEccCC
Confidence 2345789999875
No 193
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.4e-14 Score=95.93 Aligned_cols=81 Identities=12% Similarity=0.245 Sum_probs=57.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+ ..|.+.+.+... ........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~--~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI--YKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc--cccccchH
Confidence 4788898 7787666676665 899999999999999999999998753 478877554311 10011111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..++++||++.
T Consensus 81 ~~~~~i~~~~q~~~ 94 (250)
T PRK14240 81 QLRKRVGMVFQQPN 94 (250)
T ss_pred HHhccEEEEecCCc
Confidence 23457999999853
No 194
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.7e-14 Score=95.74 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=58.0
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCCC
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~~ 72 (109)
.-++++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.|. .|.+.+.+.... ......
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~--~~~~~~ 80 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY--GPRVDP 80 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc--cCccCH
Confidence 35888998 7787666676665 8899999999999999999999998764 688775442110 000111
Q ss_pred ceeeEEEEEEEecCC
Q psy16868 73 RVVNAYVEIVFDNTD 87 (109)
Q Consensus 73 ~~~~~~i~~~fq~~~ 87 (109)
...+..++++||++.
T Consensus 81 ~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 81 VAMRRRVGMVFQKPN 95 (252)
T ss_pred HHhhceeEEEeccCc
Confidence 123567999999863
No 195
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.51 E-value=1.2e-14 Score=96.08 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=56.0
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.++++|+ ..|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.... . ......
T Consensus 11 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~-~~~~~~ 86 (226)
T cd03248 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS---Q-YEHKYL 86 (226)
T ss_pred eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchH---H-cCHHHH
Confidence 4678888 66754 23455555 8999999999999999999999999999999875543111 1 111122
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..++++||++
T Consensus 87 ~~~i~~~~q~~ 97 (226)
T cd03248 87 HSKVSLVGQEP 97 (226)
T ss_pred HhhEEEEeccc
Confidence 45689999875
No 196
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.51 E-value=7.5e-15 Score=102.24 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=57.6
Q ss_pred EEEece-eecCC-------------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhh
Q psy16868 6 VIIHGF-KSYKE-------------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALL 66 (109)
Q Consensus 6 i~i~n~-~~~~~-------------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~ 66 (109)
|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+....-.
T Consensus 9 l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~ 88 (331)
T PRK15079 9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM 88 (331)
T ss_pred EEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcC
Confidence 678888 66742 34566665 899999999999999999999999999999988655311000
Q ss_pred hcCCCCceeeEEEEEEEecCCC
Q psy16868 67 HEGTGPRVVNAYVEIVFDNTDH 88 (109)
Q Consensus 67 ~~~~~~~~~~~~i~~~fq~~~~ 88 (109)
........+..|+++||++..
T Consensus 89 -~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 89 -KDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred -CHHHHHHHhCceEEEecCchh
Confidence 000111124579999999743
No 197
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.51 E-value=2.9e-14 Score=90.48 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=50.2
Q ss_pred EEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 7 IIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 7 ~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
+++|+ ..|.+ ..++++++ +++++|+|+||||||||+++|+|++.+..|.+.+.+ ...+
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~---------------~~~i 66 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE---------------GEDL 66 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---------------CceE
Confidence 45566 45642 34565555 899999999999999999999999999999876321 2568
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 67 ~~~~q~~~ 74 (166)
T cd03223 67 LFLPQRPY 74 (166)
T ss_pred EEECCCCc
Confidence 88998753
No 198
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.51 E-value=2e-14 Score=94.63 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=53.1
Q ss_pred EEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 7 IIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 7 ~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
.+.|+ ..|. ...++++++ +++++|+||||||||||+++|+|++.+..|.+.+.+...............+..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 34555 4564 233455554 8999999999999999999999999999999875543111000000011123568
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|++.
T Consensus 82 ~~~~q~~~ 89 (218)
T cd03290 82 AYAAQKPW 89 (218)
T ss_pred EEEcCCCc
Confidence 99999863
No 199
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.51 E-value=1.8e-14 Score=96.43 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=54.9
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++ .+..|.+.+.+... .........+.
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~---~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL---LELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCcc---ccCCHHHHhhc
Confidence 567788 6776655666665 8899999999999999999999995 58889887554211 11011111134
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.+++++|++
T Consensus 79 ~i~~~~q~~ 87 (248)
T PRK09580 79 GIFMAFQYP 87 (248)
T ss_pred ceEEEecCc
Confidence 688899886
No 200
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.51 E-value=1.1e-13 Score=101.84 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=63.0
Q ss_pred CeeeEEEEeceeecCCCe-eEecCC-CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 1 MYIKQVIIHGFKSYKEQT-VVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~-~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
|+|.+|+++||++|++.. .+ +|+ .++++|+||||+|||||++||++++++...... . ...++.... .....
T Consensus 2 ~~~~~l~l~nf~s~~~~~~~i-~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~~-~--~~~~~~~~~---~~~~~ 74 (562)
T PHA02562 2 LKFKKIRYKNILSVGNQPIEI-QLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDI-K--KGQLINSIN---KKDLL 74 (562)
T ss_pred ceEEEEEEEcccccCCCceEE-EEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCcC-C--HHHhhccCC---CCcEE
Confidence 678999999999998753 35 676 589999999999999999999999976432211 0 112222111 12577
Q ss_pred EEEEEecCCCCCceeEEE
Q psy16868 79 VEIVFDNTDHRVPGFIRC 96 (109)
Q Consensus 79 i~~~fq~~~~~~~~~~~~ 96 (109)
|.+.|+..+..+.+.+..
T Consensus 75 v~l~f~~~~~~y~i~R~~ 92 (562)
T PHA02562 75 VELWFEYGEKEYYIKRGI 92 (562)
T ss_pred EEEEEEECCEEEEEEEec
Confidence 888998776666665543
No 201
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.51 E-value=1e-14 Score=96.01 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=55.9
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.++++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|+..+..|.+.+.+... .. ......+
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~---~~-~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI---RQ-LDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEh---HH-CCHHHHH
Confidence 4677888 66754 33455554 899999999999999999999999999999887554311 11 0111123
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..+++++|++.
T Consensus 78 ~~i~~~~q~~~ 88 (220)
T cd03245 78 RNIGYVPQDVT 88 (220)
T ss_pred hhEEEeCCCCc
Confidence 56899999863
No 202
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2e-14 Score=97.61 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=57.1
Q ss_pred EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ +.|. +..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. .....
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i---~~----~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT---RQ----ALQKN 78 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh---HH----hhccc
Confidence 4788898 7784 455566665 899999999999999999999999999999987554321 11 11124
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.+++++|++.
T Consensus 79 ~i~~v~q~~~ 88 (272)
T PRK15056 79 LVAYVPQSEE 88 (272)
T ss_pred eEEEeccccc
Confidence 6899999864
No 203
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.6e-14 Score=95.84 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=56.7
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ ..|....++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+.. .........
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~--~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN--IYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE--cccccchHH
Confidence 4788888 6787666666655 89999999999999999999999986 367887754431 110011111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..+++++|++.
T Consensus 82 ~~~~~i~~~~q~~~ 95 (251)
T PRK14251 82 ELRKEVGMVFQQPT 95 (251)
T ss_pred HhhccEEEEecCCc
Confidence 22457999999853
No 204
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.51 E-value=5.4e-15 Score=102.93 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=57.8
Q ss_pred EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC---cccccccchhhhhhhcCCC
Q psy16868 5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSDSRQALLHEGTG 71 (109)
Q Consensus 5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~~~~~~~~~~~~ 71 (109)
.|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.+. .|.+.+.+....-. ....
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~-~~~~ 90 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL-PEKE 90 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC-CHHH
Confidence 4788888 67742 34566665 8999999999999999999999999875 78887555311100 0000
Q ss_pred Cc-eeeEEEEEEEecCCCCC
Q psy16868 72 PR-VVNAYVEIVFDNTDHRV 90 (109)
Q Consensus 72 ~~-~~~~~i~~~fq~~~~~~ 90 (109)
.. .....|+++||++...+
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l 110 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSL 110 (330)
T ss_pred HHHHhcCCEEEEEcCchhhc
Confidence 00 11247999999985433
No 205
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.6e-14 Score=96.65 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=56.2
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc---cCcccccccchhhhhhhcCCCCceee
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS---DESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
++++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+... . .......+
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i---~-~~~~~~~~ 78 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV---K-NQDVVALR 78 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec---c-cCCHHHHh
Confidence 567888 6777655566665 89999999999999999999999974 5788887554311 1 11112234
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|+++||++.
T Consensus 79 ~~i~~~~q~~~ 89 (246)
T PRK14269 79 KNVGMVFQQPN 89 (246)
T ss_pred hhEEEEecCCc
Confidence 67999999863
No 206
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1.5e-14 Score=98.76 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=56.4
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCc---ccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDES---TSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~---~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|.. |.+.+.+.. + ......
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~---~-~~~~~~ 80 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT---L-TAKTVW 80 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE---C-CcCCHH
Confidence 4788888 67753 23565555 89999999999999999999999998876 777654421 1 111111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 81 ~~~~~ig~v~q~~~ 94 (282)
T PRK13640 81 DIREKVGIVFQNPD 94 (282)
T ss_pred HHHhheEEEEECHH
Confidence 22457999999874
No 207
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=1.1e-14 Score=106.22 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=57.3
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc--CcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+ ..|.+.+.+... .........+
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~---~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL---QASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC---CCCCHHHHHH
Confidence 4889998 7787766677666 889999999999999999999999986 688887544211 1100000113
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|+++||++
T Consensus 82 ~~i~~v~q~~ 91 (506)
T PRK13549 82 AGIAIIHQEL 91 (506)
T ss_pred CCeEEEEecc
Confidence 5699999985
No 208
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.50 E-value=1.3e-14 Score=95.60 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=56.6
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.++++|+ +.|.. ..++++++ |++++|+||||||||||+++|+|+..+..|.+.+.+... . .......+
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~-~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI---S-KIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh---H-hCCHHHHh
Confidence 4678888 66753 23455555 899999999999999999999999999999987554311 1 11112224
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..++++||++.
T Consensus 78 ~~i~~~~q~~~ 88 (221)
T cd03244 78 SRISIIPQDPV 88 (221)
T ss_pred hhEEEECCCCc
Confidence 57899999864
No 209
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.50 E-value=1.2e-14 Score=93.48 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=52.5
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.| ++++++ ++.++|+|+||||||||+++|+|++.+..|.+.+.+... .........+..+
T Consensus 5 l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~~~~~~~~~~~~i 77 (182)
T cd03215 5 LEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV---TRRSPRDAIRAGI 77 (182)
T ss_pred EEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC---CccCHHHHHhCCe
Confidence 677777 555 344443 889999999999999999999999999999987554211 1100011124568
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 78 ~~~~q~~~ 85 (182)
T cd03215 78 AYVPEDRK 85 (182)
T ss_pred EEecCCcc
Confidence 99999753
No 210
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.3e-14 Score=95.41 Aligned_cols=81 Identities=16% Similarity=0.308 Sum_probs=57.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+. .|.+.+.+.. .........
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~--~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN--IYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEE--ccccccChH
Confidence 4778888 6777655566665 8999999999999999999999999876 4777644421 110011111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..++++||++.
T Consensus 82 ~~~~~i~~v~q~~~ 95 (251)
T PRK14249 82 NLRKRVGMVFQQPN 95 (251)
T ss_pred HhhceEEEEecCCc
Confidence 23567999999864
No 211
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=8.2e-15 Score=99.37 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=52.7
Q ss_pred ece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC-ceeeEEEEE
Q psy16868 9 HGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP-RVVNAYVEI 81 (109)
Q Consensus 9 ~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 81 (109)
.|+ +.|++..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+....-. ..... ......|++
T Consensus 28 ~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~-~~~~~~~~~~~~i~~ 106 (269)
T cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAM-SRKELRELRRKKISM 106 (269)
T ss_pred hhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcccc-ChhhhhhhhcCcEEE
Confidence 355 5566665566665 899999999999999999999999999999987554311000 00000 011346899
Q ss_pred EEecC
Q psy16868 82 VFDNT 86 (109)
Q Consensus 82 ~fq~~ 86 (109)
++|++
T Consensus 107 v~q~~ 111 (269)
T cd03294 107 VFQSF 111 (269)
T ss_pred EecCc
Confidence 99975
No 212
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.50 E-value=7.4e-15 Score=97.32 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=68.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|. ..|..+.++.+++ ++.++|+|||||||||||+.+++...|.+|.+.+.+. ......-....++.
T Consensus 31 li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~---~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR---RFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeee---eccCCcchHHHHHH
Confidence 4788888 7788888888887 8999999999999999999999999998888764432 11111111445677
Q ss_pred EEEEEecCCCCCceeEEEeecceeeee
Q psy16868 79 VEIVFDNTDHRVPGFIRCRSTSVDLYR 105 (109)
Q Consensus 79 i~~~fq~~~~~~~~~~~~~~~~~~~~~ 105 (109)
|++|...-...++.....+.....++.
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~ 134 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFF 134 (257)
T ss_pred hCccCHHHHhhcccccccceeeeeccc
Confidence 887764444444444445554444443
No 213
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.50 E-value=1.6e-14 Score=97.69 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=56.2
Q ss_pred EEEece-eecC---------CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC
Q psy16868 6 VIIHGF-KSYK---------EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT 70 (109)
Q Consensus 6 i~i~n~-~~~~---------~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~ 70 (109)
|+++|+ +.|. +..++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+...... ...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~ 81 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL-DRK 81 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-CHH
Confidence 667777 6674 244566666 899999999999999999999999999999987554311000 000
Q ss_pred CCceeeEEEEEEEecCC
Q psy16868 71 GPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 71 ~~~~~~~~i~~~fq~~~ 87 (109)
.....+..|+++||++.
T Consensus 82 ~~~~~~~~i~~v~q~~~ 98 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSP 98 (265)
T ss_pred HHHHHhhceEEEecChh
Confidence 00112456999999863
No 214
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.5e-14 Score=105.30 Aligned_cols=78 Identities=15% Similarity=0.289 Sum_probs=57.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..|
T Consensus 5 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i---~~~~~~~~~~~~i 81 (501)
T PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM---RFASTTAALAAGV 81 (501)
T ss_pred EEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC---CCCCHHHHHhCCE
Confidence 778888 6787666676666 889999999999999999999999999999987554311 1000111124569
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+++||++
T Consensus 82 ~~v~q~~ 88 (501)
T PRK11288 82 AIIYQEL 88 (501)
T ss_pred EEEEech
Confidence 9999975
No 215
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.50 E-value=2.4e-14 Score=92.93 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=56.5
Q ss_pred EEEEece-eecCC------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCC
Q psy16868 5 QVIIHGF-KSYKE------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGT 70 (109)
Q Consensus 5 ~i~i~n~-~~~~~------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~ 70 (109)
.|+++|+ +.|.. ..++.+++ +++++|+||||||||||+++|+|++ .+..|.+.+.+.... .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~---~-- 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---K-- 77 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc---h--
Confidence 4778888 67764 44566665 8899999999999999999999999 899999875543111 1
Q ss_pred CCceeeEEEEEEEecC
Q psy16868 71 GPRVVNAYVEIVFDNT 86 (109)
Q Consensus 71 ~~~~~~~~i~~~fq~~ 86 (109)
...+..++++||++
T Consensus 78 --~~~~~~i~~~~q~~ 91 (194)
T cd03213 78 --RSFRKIIGYVPQDD 91 (194)
T ss_pred --HhhhheEEEccCcc
Confidence 12245689999885
No 216
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.50 E-value=1.3e-14 Score=96.47 Aligned_cols=76 Identities=22% Similarity=0.268 Sum_probs=53.0
Q ss_pred EEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 7 IIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 7 ~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+++|+ ..|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.... . ......+..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~-~~~~~~~~~ 77 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA---L-ADPAWLRRQ 77 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH---h-cCHHHHhhc
Confidence 45666 55642 23455554 8999999999999999999999999999999875543111 1 111112456
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+++||++
T Consensus 78 i~~~~q~~ 85 (237)
T cd03252 78 VGVVLQEN 85 (237)
T ss_pred EEEEcCCc
Confidence 89999985
No 217
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.50 E-value=1.1e-14 Score=94.03 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=44.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|++++|+||||||||||+++|+|++.+..|.+.+.+... ..........+..++++||++.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~--~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL--DYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc--cccccchHHHHhhEEEEecChh
Confidence 889999999999999999999999999999987554311 1111111122456899999863
No 218
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=3e-14 Score=96.98 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=58.4
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
-|+++|+ ..|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.. +. .......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~---i~-~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL---LT-AENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE---CC-cCCHHHH
Confidence 3788888 67753 22566665 89999999999999999999999999999998865531 11 1111223
Q ss_pred eEEEEEEEecCC
Q psy16868 76 NAYVEIVFDNTD 87 (109)
Q Consensus 76 ~~~i~~~fq~~~ 87 (109)
+..|+++||++.
T Consensus 80 ~~~i~~v~q~~~ 91 (277)
T PRK13642 80 RRKIGMVFQNPD 91 (277)
T ss_pred hcceEEEEECHH
Confidence 567999999864
No 219
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.49 E-value=1.3e-14 Score=105.43 Aligned_cols=78 Identities=18% Similarity=0.073 Sum_probs=56.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. .. ..........+
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~--~~--~~~~~~~~~~i 79 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSH--IT--RLSFEQLQKLV 79 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcc--cc--cCCHHHHHHHh
Confidence 788998 7887666666665 89999999999999999999999999999988743321 10 00111113458
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 80 ~~~~q~~~ 87 (490)
T PRK10938 80 SDEWQRNN 87 (490)
T ss_pred ceeccCcc
Confidence 88898754
No 220
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3.6e-14 Score=95.68 Aligned_cols=82 Identities=12% Similarity=0.263 Sum_probs=57.4
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCC
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~ 72 (109)
..|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+.. +.......
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN--IYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEe--ccccccch
Confidence 45788898 6787655666665 899999999999999999999999875 36877754421 11001111
Q ss_pred ceeeEEEEEEEecCC
Q psy16868 73 RVVNAYVEIVFDNTD 87 (109)
Q Consensus 73 ~~~~~~i~~~fq~~~ 87 (109)
...+..|+++||++.
T Consensus 84 ~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 84 NRLRRQIGMVFQRPN 98 (259)
T ss_pred HhhhhheEEEecccc
Confidence 122457999999863
No 221
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.49 E-value=3e-14 Score=94.94 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=53.6
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... . .. ......++
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~---~-~~--~~~~~~i~ 75 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA---T-RV--HARDRKIG 75 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc---C-cC--ChhhcCEE
Confidence 45565 5566555566655 889999999999999999999999999999887544211 1 11 11245789
Q ss_pred EEEecC
Q psy16868 81 IVFDNT 86 (109)
Q Consensus 81 ~~fq~~ 86 (109)
+++|++
T Consensus 76 ~~~q~~ 81 (237)
T TIGR00968 76 FVFQHY 81 (237)
T ss_pred EEecCh
Confidence 999875
No 222
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.49 E-value=3.1e-14 Score=93.96 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=52.7
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ +.|....++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. + ... ....++
T Consensus 2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~---~-~~~----~~~~~~ 73 (223)
T TIGR03740 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP---W-TRK----DLHKIG 73 (223)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe---c-ccc----ccccEE
Confidence 45666 5566555565554 88999999999999999999999999999988754421 1 111 124688
Q ss_pred EEEecC
Q psy16868 81 IVFDNT 86 (109)
Q Consensus 81 ~~fq~~ 86 (109)
++||++
T Consensus 74 ~~~q~~ 79 (223)
T TIGR03740 74 SLIESP 79 (223)
T ss_pred EEcCCC
Confidence 999875
No 223
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3.9e-14 Score=95.82 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=55.5
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+.. +.........
T Consensus 11 l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~~~ 88 (264)
T PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN--LYAPDVDPVE 88 (264)
T ss_pred EEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE--ccccccChHH
Confidence 678888 6777656666665 89999999999999999999999976 257887754421 1000111112
Q ss_pred eeEEEEEEEecC
Q psy16868 75 VNAYVEIVFDNT 86 (109)
Q Consensus 75 ~~~~i~~~fq~~ 86 (109)
.+..|+++||++
T Consensus 89 ~~~~i~~v~q~~ 100 (264)
T PRK14243 89 VRRRIGMVFQKP 100 (264)
T ss_pred HhhhEEEEccCC
Confidence 245699999985
No 224
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3.6e-14 Score=95.72 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=57.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC-----CCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-----GPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~ 74 (109)
+.++|+ ++|++..++++++ +++++|+|+||||||||+++|+|+..+..|.+...+. ....+. ....
T Consensus 11 i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~---~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK---VLYFGKDIFQIDAIK 87 (257)
T ss_pred eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCE---EEECCcccccCCHHH
Confidence 678888 7888777677766 8899999999999999999999999998887653332 111111 1112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..+++++|++.
T Consensus 88 ~~~~i~~~~q~~~ 100 (257)
T PRK14246 88 LRKEVGMVFQQPN 100 (257)
T ss_pred HhcceEEEccCCc
Confidence 3567999999864
No 225
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.49 E-value=2.5e-14 Score=94.35 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=55.2
Q ss_pred EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--Cc
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PR 73 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 73 (109)
++++|+ ..|.+ ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... ..... ..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~---~~~~~~~~~ 78 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQEL---YGASEKELV 78 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEh---HhcCHhHHH
Confidence 456666 55653 34566655 889999999999999999999999999999987544311 11100 01
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..++.|+++||++.
T Consensus 79 ~~~~~i~~~~q~~~ 92 (220)
T TIGR02982 79 QLRRNIGYIFQAHN 92 (220)
T ss_pred HHHhheEEEcCChh
Confidence 22467999999863
No 226
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=4e-14 Score=96.79 Aligned_cols=79 Identities=15% Similarity=0.315 Sum_probs=56.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+... .........
T Consensus 40 l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i--~~~~~~~~~ 117 (285)
T PRK14254 40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV--YDADVDPVA 117 (285)
T ss_pred EEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc--cccccchHh
Confidence 678888 6777666666665 89999999999999999999999986 5788887554311 100111112
Q ss_pred eeEEEEEEEecC
Q psy16868 75 VNAYVEIVFDNT 86 (109)
Q Consensus 75 ~~~~i~~~fq~~ 86 (109)
.+..++++||++
T Consensus 118 ~~~~i~~v~q~~ 129 (285)
T PRK14254 118 LRRRIGMVFQKP 129 (285)
T ss_pred hhccEEEEecCC
Confidence 346799999986
No 227
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.49 E-value=2e-14 Score=97.42 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=57.4
Q ss_pred EEEece-eecC---------CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC
Q psy16868 6 VIIHGF-KSYK---------EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT 70 (109)
Q Consensus 6 i~i~n~-~~~~---------~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~ 70 (109)
|+++|+ +.|. +..++++++ |++++|+||||||||||+++|+|++.+.+|.+.+.+...... ...
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~-~~~ 82 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL-NRA 82 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-Chh
Confidence 778888 6776 245566665 889999999999999999999999999999987554211000 000
Q ss_pred CCceeeEEEEEEEecCC
Q psy16868 71 GPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 71 ~~~~~~~~i~~~fq~~~ 87 (109)
.....+..++++||++.
T Consensus 83 ~~~~~~~~i~~v~q~~~ 99 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSI 99 (268)
T ss_pred HHHHHHhcEEEEEcChh
Confidence 00112457999999864
No 228
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=2.8e-14 Score=97.15 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=56.7
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ +++++|+|+||||||||+++|+|++.| ..|.+.+.+... .......
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i---~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI---FNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEc---cccchhH
Confidence 3678888 7787666666665 899999999999999999999999885 578776544211 0100111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 98 ~~~~~i~~v~q~~~ 111 (276)
T PRK14271 98 EFRRRVGMLFQRPN 111 (276)
T ss_pred HHhhheEEeccCCc
Confidence 22457999999853
No 229
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.49 E-value=6.8e-14 Score=103.11 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=56.0
Q ss_pred EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
-|+++|+ +.|. +..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.. ..
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~---------------~~ 70 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP---------------GI 70 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------------CC
Confidence 5889999 7887 566677776 899999999999999999999999999999876211 13
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|++++|++.
T Consensus 71 ~i~~v~Q~~~ 80 (556)
T PRK11819 71 KVGYLPQEPQ 80 (556)
T ss_pred EEEEEecCCC
Confidence 5899999863
No 230
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3e-14 Score=96.02 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=56.7
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+... ........
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i--~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI--YEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEc--ccccchHH
Confidence 4778888 6777655566665 889999999999999999999999874 688877544211 00111111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..++++||++.
T Consensus 90 ~~~~~i~~v~q~~~ 103 (258)
T PRK14268 90 ELRKNVGMVFQKPN 103 (258)
T ss_pred HHhhhEEEEecCCc
Confidence 22456999999763
No 231
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.49 E-value=3.1e-14 Score=94.03 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=54.9
Q ss_pred EEEece-eecCC-------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchh--hhhhhcCC
Q psy16868 6 VIIHGF-KSYKE-------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR--QALLHEGT 70 (109)
Q Consensus 6 i~i~n~-~~~~~-------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~--~~~~~~~~ 70 (109)
|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.. .+......
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 567777 66742 24566665 89999999999999999999999999999988754210 01110000
Q ss_pred CC--ceeeEEEEEEEecCC
Q psy16868 71 GP--RVVNAYVEIVFDNTD 87 (109)
Q Consensus 71 ~~--~~~~~~i~~~fq~~~ 87 (109)
.. ......++++||++.
T Consensus 82 ~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred HHHHHHHhcceEEEecccc
Confidence 00 011356899999864
No 232
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.7e-14 Score=95.91 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=52.9
Q ss_pred EEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 7 IIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 7 ~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
+++|+ ..|. ...++++++ |++++|+||||||||||+++|+|++.+..|.+.+.+.... .......+..+
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~----~~~~~~~~~~i 77 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR----EVTLDSLRRAI 77 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh----hCCHHHHHhhE
Confidence 45666 5564 333455554 8999999999999999999999999999999875542111 11111224568
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+++||++
T Consensus 78 ~~~~q~~ 84 (236)
T cd03253 78 GVVPQDT 84 (236)
T ss_pred EEECCCC
Confidence 8888885
No 233
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.49 E-value=4.5e-14 Score=94.69 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=56.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--c---CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--D---ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~---~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
-|+++|+ ..|.+..++++++ |++++|+||||||||||+++|+|+.. | ..|.+.+.+... ........
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~--~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI--YSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC--cCcccchH
Confidence 4788888 6787655566665 88999999999999999999999853 5 378877554211 10011111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..++++||++.
T Consensus 83 ~~~~~i~~v~q~~~ 96 (252)
T PRK14239 83 DLRKEIGMVFQQPN 96 (252)
T ss_pred hhhhcEEEEecCCc
Confidence 22457999999863
No 234
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.49 E-value=1.5e-14 Score=96.31 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=52.8
Q ss_pred EEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 7 IIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 7 ~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
+++|+ ..|.+ ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+... . .......+.
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~---~-~~~~~~~~~ 77 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI---R-DLNLRWLRS 77 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEeh---h-hcCHHHHHh
Confidence 46666 55643 23455544 899999999999999999999999999999987555311 1 111111235
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.++++||++
T Consensus 78 ~i~~~~q~~ 86 (238)
T cd03249 78 QIGLVSQEP 86 (238)
T ss_pred hEEEECCch
Confidence 689999875
No 235
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.49 E-value=2.6e-14 Score=96.45 Aligned_cols=83 Identities=13% Similarity=0.239 Sum_probs=57.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC---cccccccchhhhhhh-cCCCCce
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSDSRQALLH-EGTGPRV 74 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~~~~~~~~-~~~~~~~ 74 (109)
-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|. .|.+.+.+....... .......
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 4788888 6787666676666 8999999999999999999999999865 477775543110000 0001112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..++++||++.
T Consensus 84 ~~~~i~~~~q~~~ 96 (262)
T PRK09984 84 SRANTGYIFQQFN 96 (262)
T ss_pred HHhheEEEccccc
Confidence 2456899999863
No 236
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.2e-14 Score=94.17 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=55.4
Q ss_pred EEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+++.++ ++|++.. ++.+++ |++++|.|||||||||+|++|+.++.|++|.+..++- .. ...+...+..
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~----d~-~~~p~~vrr~ 76 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV----DT-VRDPSFVRRK 76 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeec----cc-ccChHHHhhh
Confidence 567777 7888753 455554 8999999999999999999999999999999884431 11 1223345778
Q ss_pred EEEEE
Q psy16868 79 VEIVF 83 (109)
Q Consensus 79 i~~~f 83 (109)
|+++|
T Consensus 77 IGVl~ 81 (245)
T COG4555 77 IGVLF 81 (245)
T ss_pred cceec
Confidence 99998
No 237
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=4.4e-14 Score=93.86 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=53.7
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
.++|+ .+|.+..++++++ |++++|+|+||||||||+++|+|.+.+..|.+.+.+... . ... .....++
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~---~-~~~--~~~~~i~ 75 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI---T-NLP--PHKRPVN 75 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc---C-cCC--hhhcceE
Confidence 45666 5565555565554 889999999999999999999999999999887544211 1 111 1145689
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
+++|++.
T Consensus 76 ~~~q~~~ 82 (232)
T cd03300 76 TVFQNYA 82 (232)
T ss_pred EEecccc
Confidence 9998853
No 238
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.8e-14 Score=102.41 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=47.2
Q ss_pred eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC-ceeeEEEEEEEecCC
Q psy16868 19 VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP-RVVNAYVEIVFDNTD 87 (109)
Q Consensus 19 ~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~fq~~~ 87 (109)
++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+....-. ..... ...+..++++||++.
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~-~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI-SDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcC-CHHHHHHHHhCCEEEEECCCc
Confidence 455554 899999999999999999999999999999987554311000 00000 011346999999863
No 239
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.48 E-value=6.4e-14 Score=93.97 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=54.2
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHh--hccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFV--LSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
|+++|+ ..|.+..++.+++ |++++|+|+||||||||+++|+|+ +.+..|.+.+.+... ...........
T Consensus 8 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~---~~~~~~~~~~~ 84 (252)
T CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI---LDLEPEERAHL 84 (252)
T ss_pred EEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc---ccCChhhhhee
Confidence 788888 6776655666665 899999999999999999999998 467889887544211 11011111123
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.++++||++
T Consensus 85 ~~~~~~q~~ 93 (252)
T CHL00131 85 GIFLAFQYP 93 (252)
T ss_pred eEEEEeccc
Confidence 477888875
No 240
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.47 E-value=3e-14 Score=95.99 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=57.0
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ ..|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+.. +. .......+
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~--i~--~~~~~~~~ 94 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGID--IS--KLPLHTLR 94 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEE--hh--hCCHHHHh
Confidence 5788888 67764 34566655 89999999999999999999999999999998755431 11 11111224
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 95 ~~i~~v~q~~ 104 (257)
T cd03288 95 SRLSIILQDP 104 (257)
T ss_pred hhEEEECCCC
Confidence 5689999886
No 241
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=7.5e-14 Score=94.26 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=56.5
Q ss_pred eeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCC
Q psy16868 3 IKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTG 71 (109)
Q Consensus 3 i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~ 71 (109)
|..|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|++.+. .|.+.+.+.. +......
T Consensus 5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~--i~~~~~~ 82 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN--IYERRVN 82 (261)
T ss_pred cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEE--hhccccc
Confidence 456889998 6786655566665 8999999999999999999999999874 4555433321 1000111
Q ss_pred CceeeEEEEEEEecCC
Q psy16868 72 PRVVNAYVEIVFDNTD 87 (109)
Q Consensus 72 ~~~~~~~i~~~fq~~~ 87 (109)
....+..++++||++.
T Consensus 83 ~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 83 LNRLRRQVSMVHPKPN 98 (261)
T ss_pred hHHhhccEEEEecCCc
Confidence 1122456899998753
No 242
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=4.9e-14 Score=96.39 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=56.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|+.. +..|.+.+.+... ........
T Consensus 39 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i--~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI--YGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEh--hhcccchH
Confidence 3678888 6776655566655 89999999999999999999999864 3788887554311 10001111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..++++||++.
T Consensus 117 ~~~~~i~~v~q~~~ 130 (286)
T PRK14275 117 LLRKKIGMVFQKPN 130 (286)
T ss_pred HhhhcEEEECCCCC
Confidence 22457999999863
No 243
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.47 E-value=2.4e-14 Score=104.23 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=55.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc--CcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.+ ..|.+.+.+.. +.........+.
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~---~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP---LKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE---CCCCCHHHHHhC
Confidence 577888 6787666666665 889999999999999999999999876 68887754421 111000001134
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 79 ~i~~v~q~~~ 88 (500)
T TIGR02633 79 GIVIIHQELT 88 (500)
T ss_pred CEEEEeeccc
Confidence 6999999863
No 244
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.47 E-value=1.5e-14 Score=99.49 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=49.3
Q ss_pred cCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 14 YKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 14 ~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|++..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. .....+..|++++|++.
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~--~~~~~~~~i~~~~q~~~ 76 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV---VR--EPRKVRRSIGIVPQYAS 76 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc---cc--CHHHHHhhcEEecCCCC
Confidence 44444455444 889999999999999999999999999999988554311 11 11122456999999753
No 245
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=7.3e-14 Score=93.83 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=56.2
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ ..|.+..++++++ |++++|+||||||||||+++|+|++.+ ..|.+.+.+... ........
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~--~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI--MDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc--cccccchh
Confidence 4778888 6787666666665 889999999999999999999998753 368777544211 11000111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 84 ~~~~~i~~~~q~~~ 97 (253)
T PRK14261 84 ALRRKIGMVFQRPN 97 (253)
T ss_pred hhhceEEEEecCCc
Confidence 22467999999863
No 246
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=5.6e-14 Score=91.05 Aligned_cols=74 Identities=7% Similarity=0.076 Sum_probs=53.8
Q ss_pred EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--cCcccccccchhhhhhhcCCCC
Q psy16868 5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--DESTSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~~~~~~~~~~~~~~~~~~~~~~ 72 (109)
.|+++|+ ..|.+ ..++++++ +++++|+||||||||||+++|+|+.. +..|.+.+.+... .
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~---~----- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL---D----- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh---H-----
Confidence 4678888 67754 44566665 88999999999999999999999863 6788877544311 1
Q ss_pred ceeeEEEEEEEecC
Q psy16868 73 RVVNAYVEIVFDNT 86 (109)
Q Consensus 73 ~~~~~~i~~~fq~~ 86 (109)
...+..+++++|++
T Consensus 75 ~~~~~~i~~~~q~~ 88 (192)
T cd03232 75 KNFQRSTGYVEQQD 88 (192)
T ss_pred HHhhhceEEecccC
Confidence 11245689999875
No 247
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=8.2e-14 Score=102.12 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=53.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.+ ...|
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------~~~i 66 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP---------------NERL 66 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------------CCEE
Confidence 677888 6787666677766 899999999999999999999999999889876321 1348
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|.+
T Consensus 67 ~~~~q~~ 73 (530)
T PRK15064 67 GKLRQDQ 73 (530)
T ss_pred EEEeccC
Confidence 8888875
No 248
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.47 E-value=6e-14 Score=91.82 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=54.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|+..+..|.+.+.+.... . . . .+..+
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~-~-~-~~~~~ 75 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID----D-P-D-VAEAC 75 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc----c-h-h-hHhhc
Confidence 678888 6777665666665 8999999999999999999999999999999875543111 0 0 1 24457
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|.+
T Consensus 76 ~~~~~~~ 82 (207)
T PRK13539 76 HYLGHRN 82 (207)
T ss_pred EEecCCC
Confidence 7777653
No 249
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=7.7e-14 Score=93.63 Aligned_cols=80 Identities=13% Similarity=0.217 Sum_probs=55.5
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--c---CcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--D---ESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~---~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|+.. + ..|.+.+.+... .........
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~--~~~~~~~~~ 83 (252)
T PRK14255 6 ITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI--YAPNEDVVQ 83 (252)
T ss_pred EEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEc--ccccccHHH
Confidence 678888 6787655676665 88999999999999999999999864 3 478877544311 000111112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..|++++|++.
T Consensus 84 ~~~~i~~~~q~~~ 96 (252)
T PRK14255 84 LRKQVGMVFQQPN 96 (252)
T ss_pred hcCeEEEEECCCc
Confidence 2457999999853
No 250
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=6.8e-14 Score=95.00 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=56.6
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+.. +........
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~--i~~~~~~~~ 102 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN--IYDKKVDVA 102 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE--CcccccCHH
Confidence 4778888 6776655566655 899999999999999999999999873 68887754431 111111111
Q ss_pred eeeEEEEEEEecC
Q psy16868 74 VVNAYVEIVFDNT 86 (109)
Q Consensus 74 ~~~~~i~~~fq~~ 86 (109)
..+..+++++|++
T Consensus 103 ~~~~~i~~v~q~~ 115 (272)
T PRK14236 103 ELRRRVGMVFQRP 115 (272)
T ss_pred HHhccEEEEecCC
Confidence 2356799999875
No 251
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=6.1e-14 Score=95.38 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=56.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++.+ ..|.+.+.+... ........
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l--~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI--YDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec--ccccchhH
Confidence 4778888 6777655666665 899999999999999999999999863 468776544211 00001111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 98 ~~~~~i~~v~q~~~ 111 (274)
T PRK14265 98 KLRRQVGMVFQRPN 111 (274)
T ss_pred HHhhcEEEEccCCc
Confidence 22467999999863
No 252
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=8.5e-14 Score=102.05 Aligned_cols=68 Identities=16% Similarity=0.346 Sum_probs=55.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+ ...
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------------~~~ 383 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE---------------NAN 383 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC---------------ceE
Confidence 4788898 7787666666665 899999999999999999999999999999876321 246
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
+++++|++.
T Consensus 384 i~~~~q~~~ 392 (530)
T PRK15064 384 IGYYAQDHA 392 (530)
T ss_pred EEEEccccc
Confidence 889998754
No 253
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.47 E-value=2.9e-14 Score=91.86 Aligned_cols=49 Identities=37% Similarity=0.659 Sum_probs=40.8
Q ss_pred EEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 5 QVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 5 ~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+|+++||++|.+.. + +|++++++|+||||+||||+++||.+++++....
T Consensus 1 ~i~i~nf~~~~~~~-i-~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLE-I-DFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEE-E-E--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceE-E-EcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 58999999997766 6 8888999999999999999999999999876543
No 254
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=7.6e-14 Score=93.56 Aligned_cols=79 Identities=11% Similarity=0.260 Sum_probs=55.2
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--c---CcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--D---ESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~---~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
++++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++. + ..|.+.+.+... .........
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i--~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDI--YDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEc--ccccccHHH
Confidence 778888 6777655666665 89999999999999999999999875 3 678877554311 000011112
Q ss_pred eeEEEEEEEecC
Q psy16868 75 VNAYVEIVFDNT 86 (109)
Q Consensus 75 ~~~~i~~~fq~~ 86 (109)
.+..++++||++
T Consensus 82 ~~~~i~~~~q~~ 93 (250)
T PRK14266 82 LRKKVGMVFQKP 93 (250)
T ss_pred HhhheEEEecCC
Confidence 245799999885
No 255
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=8.8e-14 Score=93.35 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=54.7
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.-+++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|+.. +..|.+.+.+.. +........
T Consensus 5 ~~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID--VYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe--hHhcccchH
Confidence 3456777 5676555566665 89999999999999999999999985 357887754431 111111111
Q ss_pred eeeEEEEEEEecC
Q psy16868 74 VVNAYVEIVFDNT 86 (109)
Q Consensus 74 ~~~~~i~~~fq~~ 86 (109)
..+..++++||++
T Consensus 83 ~~~~~i~~v~q~~ 95 (251)
T PRK14244 83 LLRAKVGMVFQKP 95 (251)
T ss_pred HHhhhEEEEecCc
Confidence 2245799999985
No 256
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.47 E-value=8.8e-14 Score=102.42 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=54.4
Q ss_pred EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
++++|+ +.|. +..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.. ...
T Consensus 5 i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------------~~~ 69 (552)
T TIGR03719 5 YTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---------------GIK 69 (552)
T ss_pred EEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------------CCE
Confidence 788898 7786 555676666 889999999999999999999999999999876211 246
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|++++|++.
T Consensus 70 i~~v~Q~~~ 78 (552)
T TIGR03719 70 VGYLPQEPQ 78 (552)
T ss_pred EEEEeccCC
Confidence 899999863
No 257
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.46 E-value=3.6e-14 Score=103.87 Aligned_cols=77 Identities=12% Similarity=0.229 Sum_probs=60.4
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+||||||||||+++|++++.|..|.+.+++.... .. ....+.
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~----~~-~~~lr~ 408 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS----SL-QDELRR 408 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh----hH-HHHHHh
Confidence 5888888 67865 34677776 8999999999999999999999999999999986653221 11 233467
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 409 ~i~~V~Q~~ 417 (529)
T TIGR02868 409 RISVFAQDA 417 (529)
T ss_pred heEEEccCc
Confidence 899999987
No 258
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=6.6e-14 Score=91.37 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=55.1
Q ss_pred EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc---cCcccccccchhhhhhhcCCC
Q psy16868 5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS---DESTSLRHSDSRQALLHEGTG 71 (109)
Q Consensus 5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~---~~~~~~~~~~~~~~~~~~~~~ 71 (109)
.+.++|+ +.|.. ..++++++ +++++|+|+||||||||+++|+|++. +..|.+.+.+.... . .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~---~-~- 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK---E-F- 77 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc---c-c-
Confidence 4677887 66753 34565554 88999999999999999999999998 78898875442111 0 0
Q ss_pred CceeeEEEEEEEecC
Q psy16868 72 PRVVNAYVEIVFDNT 86 (109)
Q Consensus 72 ~~~~~~~i~~~fq~~ 86 (109)
....+..+++++|++
T Consensus 78 ~~~~~~~i~~~~q~~ 92 (202)
T cd03233 78 AEKYPGEIIYVSEED 92 (202)
T ss_pred hhhhcceEEEEeccc
Confidence 112345789999875
No 259
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=7.6e-14 Score=93.61 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=54.9
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh---cc--CcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL---SD--ESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l---~~--~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ +.|.+..++++++ |++++|+|+||||||||+++|+|+. ++ ..|.+.+.+.. +........
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRN--IYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEe--cccccccHH
Confidence 3678888 6777666666655 8999999999999999999999973 33 36887754421 111111111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 81 ~~~~~i~~v~q~~~ 94 (250)
T PRK14245 81 ELRKNVGMVFQRPN 94 (250)
T ss_pred HHhhheEEEecCCc
Confidence 22456999999863
No 260
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.46 E-value=1.6e-14 Score=101.66 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=50.4
Q ss_pred cCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce----eeEEEEEEEe
Q psy16868 14 YKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV----VNAYVEIVFD 84 (109)
Q Consensus 14 ~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~fq 84 (109)
|+...++++++ |++++|+||||||||||+++|+|++.|+.|.+.+.+... . ...... .+..|+++||
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i---~-~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI---M-KQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEEC---C-cCCHHHHHHHHhCcEEEEEC
Confidence 44444455554 899999999999999999999999999999988655311 1 111111 1467999999
Q ss_pred cCC
Q psy16868 85 NTD 87 (109)
Q Consensus 85 ~~~ 87 (109)
++.
T Consensus 79 ~~~ 81 (363)
T TIGR01186 79 QFA 81 (363)
T ss_pred CCc
Confidence 863
No 261
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.46 E-value=5.5e-14 Score=98.62 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=44.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
+++++|+||||||||||+++|+|++.|..|.+.+.+............+..++.|+++||++
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 85 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA 85 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCc
Confidence 89999999999999999999999999999998755431100000011122346799999986
No 262
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=6.1e-14 Score=91.86 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|++++|+||||||||||+++|+|++.+..|.+.+.+... . ... ..+..++++||++.
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~---~-~~~--~~~~~i~~~~q~~~ 80 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV---T-AAP--PADRPVSMLFQENN 80 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc---C-cCC--HhHccEEEEecccc
Confidence 899999999999999999999999999999987544211 1 111 11356999999864
No 263
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=7e-14 Score=96.40 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=57.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|.++|+ ..|.+..++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+.. +........
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~--i~~~~~~~~ 122 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD--IYQDGVNLV 122 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE--cccccccHH
Confidence 3778888 6787665566555 89999999999999999999999985 578888755431 110111111
Q ss_pred eeeEEEEEEEecCC
Q psy16868 74 VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 ~~~~~i~~~fq~~~ 87 (109)
..+..++++||++.
T Consensus 123 ~~~~~i~~v~q~~~ 136 (305)
T PRK14264 123 ELRKRVGMVFQSPN 136 (305)
T ss_pred HHhhceEEEccCCc
Confidence 22457999999863
No 264
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.4e-14 Score=105.29 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=57.3
Q ss_pred EEEece-eecCC-----------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc
Q psy16868 6 VIIHGF-KSYKE-----------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE 68 (109)
Q Consensus 6 i~i~n~-~~~~~-----------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~ 68 (109)
|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.|..|.+.+.+....-. .
T Consensus 314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~-~ 392 (623)
T PRK10261 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL-S 392 (623)
T ss_pred EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC-C
Confidence 778888 67741 34566665 899999999999999999999999999999988655311000 0
Q ss_pred CCCCceeeEEEEEEEecCC
Q psy16868 69 GTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 69 ~~~~~~~~~~i~~~fq~~~ 87 (109)
.......+..|+++||++.
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~ 411 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPY 411 (623)
T ss_pred HHHHHHhcCCeEEEecCch
Confidence 0000112457999999874
No 265
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=99.45 E-value=3.5e-13 Score=94.81 Aligned_cols=52 Identities=29% Similarity=0.537 Sum_probs=46.1
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
|++++|+|+||++++... + .++ +.++|+|+|++||||+|+||+.++.+....
T Consensus 1 M~l~~i~i~~FRgi~~~~-~-~l~-~~t~liG~N~~GKss~l~Al~~~l~~~~~~ 52 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLS-L-PLD-DNTVLIGENNWGKSSLLDALSLLLSPSRRL 52 (373)
T ss_pred CeEEEEEEeccCccceEE-E-Eec-CceEEEcCCCccHhHHHHHHHHHhCCCccc
Confidence 999999999999998866 5 665 789999999999999999999999887443
No 266
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.8e-14 Score=98.59 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=64.4
Q ss_pred EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCC
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGT 70 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~ 70 (109)
++++|+ ..|.. ..++++++ +++.+|+|++||||||+..||.+++++. .|.+.+.+...--.....
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 455665 34433 34566665 8999999999999999999999999832 345554443110010111
Q ss_pred CCceeeEEEEEEEecCCCCCceeEEEeecceee
Q psy16868 71 GPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDL 103 (109)
Q Consensus 71 ~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~~ 103 (109)
...-+...|+++||+|...+.+..+...+..+.
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~ 114 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEV 114 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHH
Confidence 112346789999999999988777776655443
No 267
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=6.1e-14 Score=90.80 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=48.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
++++|+ +.|....++++++ |++++|+|||||||||||.+++.++...+|.+.+.+
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g 62 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG 62 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEee
Confidence 578898 8898887777776 899999999999999999999999999999887544
No 268
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=1.2e-13 Score=91.98 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=52.0
Q ss_pred EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
+++|+ ..|.+. ++++++ +++++|+|+||||||||+++|+|++.+..|.+.+.+... .... .....++
T Consensus 2 ~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~----~~~~--~~~~~i~ 74 (235)
T cd03299 2 KVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI----TNLP--PEKRDIS 74 (235)
T ss_pred eeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc----CcCC--hhHcCEE
Confidence 45555 455443 355554 889999999999999999999999999999887554211 1111 1245799
Q ss_pred EEEecC
Q psy16868 81 IVFDNT 86 (109)
Q Consensus 81 ~~fq~~ 86 (109)
++||++
T Consensus 75 ~~~q~~ 80 (235)
T cd03299 75 YVPQNY 80 (235)
T ss_pred EEeecC
Confidence 999985
No 269
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.4e-13 Score=91.42 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=51.8
Q ss_pred EEEece-eecCCCeeEecCC---CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD---KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~---~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
++++|+ +.|.....-.+++ |++++|+||||||||||+++|+|++.+..|.+.+.+... . ... .....+++
T Consensus 2 l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~-~~~--~~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDH---T-TTP--PSRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeec---C-cCC--hhhccEEE
Confidence 456777 5665432101222 899999999999999999999999999999987554311 1 111 11356899
Q ss_pred EEecC
Q psy16868 82 VFDNT 86 (109)
Q Consensus 82 ~fq~~ 86 (109)
+||++
T Consensus 76 ~~q~~ 80 (232)
T PRK10771 76 LFQEN 80 (232)
T ss_pred Eeccc
Confidence 99875
No 270
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=3.4e-15 Score=96.59 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=61.9
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.+.+.|+ ++|+.++++.+++ |++++|.|||||||||.+.++.|+..+.+|.+.+++.+.. .-......+..
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT---~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDIT---KLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccc---cCChHHHhhcC
Confidence 5788999 8999998887776 8999999999999999999999999999999885553211 11111223567
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+|.+|.+
T Consensus 81 igYLpQE~ 88 (243)
T COG1137 81 IGYLPQEA 88 (243)
T ss_pred cccccccc
Confidence 88888876
No 271
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.44 E-value=5.6e-14 Score=102.09 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=56.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-CcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-ESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|+.++ ..|.+.+.+.. ..........+.
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~---~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR---RGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc---CCCCCCHHHHHh
Confidence 3788898 7787666677766 899999999999999999999998764 57888755431 111111111245
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 337 ~i~~v~q~~ 345 (490)
T PRK10938 337 HIGYVSSSL 345 (490)
T ss_pred hceEECHHH
Confidence 689999875
No 272
>PRK10869 recombination and repair protein; Provisional
Probab=99.44 E-value=5.5e-13 Score=98.25 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=54.8
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
|+.+|+++||..|.+.. + +|++++++|+||||||||+|++||+.++..... ...+..+.. .+.|..
T Consensus 1 ML~~L~I~nf~~i~~~~-i-~f~~glnvitGetGaGKS~ildAi~~llG~r~~--------~~~ir~g~~----~a~Ve~ 66 (553)
T PRK10869 1 MLAQLTISNFAIVRELE-I-DFQSGMTVITGETGAGKSIAIDALGLCLGGRAE--------ASMVRPGAT----RADLCA 66 (553)
T ss_pred CccEEEEcccccceeeE-E-ecCCCcEEEECCCCCChHHHHHHHHHHhCCCcc--------cccccCCCC----cEEEEE
Confidence 47899999999997666 6 888999999999999999999999999853221 123444433 678888
Q ss_pred EEec
Q psy16868 82 VFDN 85 (109)
Q Consensus 82 ~fq~ 85 (109)
+|..
T Consensus 67 ~F~~ 70 (553)
T PRK10869 67 RFSL 70 (553)
T ss_pred EEec
Confidence 8865
No 273
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.44 E-value=4.7e-14 Score=103.36 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=56.1
Q ss_pred EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcC
Q psy16868 5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEG 69 (109)
Q Consensus 5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~ 69 (109)
-++++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.+ ..|.+.+.+... ....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i--~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL--LHAS 82 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec--ccCC
Confidence 3788888 77853 34566665 899999999999999999999999986 578877544211 0000
Q ss_pred CC-C-ceeeEEEEEEEecCC
Q psy16868 70 TG-P-RVVNAYVEIVFDNTD 87 (109)
Q Consensus 70 ~~-~-~~~~~~i~~~fq~~~ 87 (109)
.. . ......|+++||++.
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred HHHHHHHhcCceEEEecCch
Confidence 00 0 011246999999864
No 274
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.44 E-value=7.8e-14 Score=94.99 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=56.3
Q ss_pred EEEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ ..|. ...++++++ |++++|+|+||||||||+++|++++. ..|.+.+++.... .......+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~----~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWN----SVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhh----hCCHHHHh
Confidence 4778888 6773 334566665 89999999999999999999999997 6788875553111 11112235
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|+++||++.
T Consensus 77 ~~i~~v~q~~~ 87 (275)
T cd03289 77 KAFGVIPQKVF 87 (275)
T ss_pred hhEEEECCCcc
Confidence 67999999863
No 275
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.44 E-value=8.1e-14 Score=97.84 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=45.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|++++|+||||||||||+++|+|++.|..|.+.+.+...............+..|+++||++.
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~ 85 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCc
Confidence 789999999999999999999999999999987555321100000011223457999999863
No 276
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.43 E-value=4.3e-14 Score=102.73 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=52.6
Q ss_pred ece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 9 HGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 9 ~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
+|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..++++
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI---DFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEEC---CCCCHHHHHhCCEEEE
Confidence 345 4565555566555 889999999999999999999999999999987554311 1000001113568999
Q ss_pred EecCC
Q psy16868 83 FDNTD 87 (109)
Q Consensus 83 fq~~~ 87 (109)
||++.
T Consensus 79 ~q~~~ 83 (491)
T PRK10982 79 HQELN 83 (491)
T ss_pred ecccc
Confidence 99863
No 277
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.43 E-value=2e-13 Score=100.60 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=53.5
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+ ...|
T Consensus 323 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~---------------~~~i 387 (552)
T TIGR03719 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE---------------TVKL 387 (552)
T ss_pred EEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC---------------ceEE
Confidence 778888 6787666666665 899999999999999999999999999999876311 1258
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|++
T Consensus 388 ~~v~q~~ 394 (552)
T TIGR03719 388 AYVDQSR 394 (552)
T ss_pred EEEeCCc
Confidence 8999875
No 278
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.43 E-value=6.7e-14 Score=105.20 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=61.9
Q ss_pred EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.++++|. .+|... .++.+++ |+.++|+|+||||||||++.|.|++.|..|.+.+++. ....-+....+
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~----dl~~i~~~~lR 546 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV----DLNDIDLASLR 546 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----eHHhcCHHHHH
Confidence 5888888 677655 3455555 8999999999999999999999999999999996553 33334445568
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
+.|++|.|++
T Consensus 547 ~~ig~V~Q~~ 556 (709)
T COG2274 547 RQVGYVLQDP 556 (709)
T ss_pred hheeEEcccc
Confidence 8999999986
No 279
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.43 E-value=2.1e-13 Score=89.55 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=44.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|++++|+||||||||||+++|+|++.+..|.+.+.+.. +.. . ...+..++++||++.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~~-~--~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS---HTG-L--APYQRPVSMLFQENN 80 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE---ccc-C--ChhccceEEEeccCc
Confidence 89999999999999999999999999999998755431 111 1 112466999999863
No 280
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.42 E-value=9.2e-14 Score=88.97 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=54.0
Q ss_pred EEece-eecCCCeeEecCC---CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 7 IIHGF-KSYKEQTVVEPFD---KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 7 ~i~n~-~~~~~~~~l~~~~---~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
.+.+. .+|....--.++. +++++|+||+|||||||++.|+|...|.+|.+..++... . ..++.++=|.|+
T Consensus 3 ~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~----t--~~~P~~RPVSml 76 (231)
T COG3840 3 ALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH----T--ASPPAERPVSML 76 (231)
T ss_pred cccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeec----C--cCCcccCChhhh
Confidence 34555 4566654111222 899999999999999999999999999999988554311 1 122335668999
Q ss_pred EecCCCC
Q psy16868 83 FDNTDHR 89 (109)
Q Consensus 83 fq~~~~~ 89 (109)
||..+--
T Consensus 77 FQEnNLF 83 (231)
T COG3840 77 FQENNLF 83 (231)
T ss_pred hhccccc
Confidence 9986543
No 281
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=2.4e-13 Score=91.90 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=53.9
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
+.+++. ..|++..++++++ |++++|+|+||||||||+++|+|++.| ..|.+.+.+... .........
T Consensus 9 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i--~~~~~~~~~ 86 (261)
T PRK14263 9 MDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV--YGKGVDPVV 86 (261)
T ss_pred EEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec--cccccchHh
Confidence 445555 4566555566665 899999999999999999999999976 578877554311 100011112
Q ss_pred eeEEEEEEEecCC
Q psy16868 75 VNAYVEIVFDNTD 87 (109)
Q Consensus 75 ~~~~i~~~fq~~~ 87 (109)
.+..++++||++.
T Consensus 87 ~~~~i~~v~q~~~ 99 (261)
T PRK14263 87 VRRYIGMVFQQPN 99 (261)
T ss_pred hhhceEEEecCCc
Confidence 2456999999863
No 282
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.42 E-value=4e-14 Score=93.69 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=46.3
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
.+.++|+ ..|.+..++++++ +++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus 22 ~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 83 (224)
T cd03220 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83 (224)
T ss_pred hhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 3556666 6677776677665 899999999999999999999999999999887544
No 283
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.5e-13 Score=90.50 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=59.0
Q ss_pred EEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--cCcccccccchhhhhhhcCCCCceee
Q psy16868 6 VIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--DESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 6 i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
++++|+ ....++ .+++.++ +++++|.||||||||||..+|+|.-. .+.|.+.+.++. +..-......+
T Consensus 4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ged---I~~l~~~ERAr 80 (251)
T COG0396 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED---ILELSPDERAR 80 (251)
T ss_pred eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcc---cccCCHhHHHh
Confidence 788888 666664 6677666 89999999999999999999999863 677888766642 21222222335
Q ss_pred EEEEEEEecCCCC
Q psy16868 77 AYVEIVFDNTDHR 89 (109)
Q Consensus 77 ~~i~~~fq~~~~~ 89 (109)
+.|.+-||.|..-
T Consensus 81 ~GifLafQ~P~ei 93 (251)
T COG0396 81 AGIFLAFQYPVEI 93 (251)
T ss_pred cCCEEeecCCccC
Confidence 6788899998543
No 284
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.42 E-value=1.1e-12 Score=96.82 Aligned_cols=71 Identities=24% Similarity=0.375 Sum_probs=55.4
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
||..|++.||+.|.+.. + +|++++++|+||||||||+|++||.+++..... ..++..+.. .+.|..
T Consensus 1 Ml~~l~i~nf~~~~~~~-i-~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~~--------~~~i~~~~~----~~~v~~ 66 (563)
T TIGR00634 1 MLTELRINNFALIRVLT-V-EFERGLTVLTGETGAGKSMIIDALSLLGGQRAG--------ASRVRSGEN----RAVVEG 66 (563)
T ss_pred CceEEEEcceeeeeeeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhCcCch--------HHHhcCCCC----eEEEEE
Confidence 47899999999997766 6 788999999999999999999999999865421 224444433 677888
Q ss_pred EEecC
Q psy16868 82 VFDNT 86 (109)
Q Consensus 82 ~fq~~ 86 (109)
+|+.+
T Consensus 67 ~f~~~ 71 (563)
T TIGR00634 67 RFTTE 71 (563)
T ss_pred EEccC
Confidence 88653
No 285
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.42 E-value=2.7e-13 Score=99.97 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=53.6
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+ ...|
T Consensus 325 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------------~~~i 389 (556)
T PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE---------------TVKL 389 (556)
T ss_pred EEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC---------------ceEE
Confidence 778888 7787666666666 899999999999999999999999999999876311 1258
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|++
T Consensus 390 ~~v~q~~ 396 (556)
T PRK11819 390 AYVDQSR 396 (556)
T ss_pred EEEeCch
Confidence 8999875
No 286
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.42 E-value=3.1e-13 Score=101.00 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=53.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|++.|..|.+.+ +. ...
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~--------------~~~ 383 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT--------------KLE 383 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC--------------CcE
Confidence 3788888 7787766676666 8899999999999999999999999999998762 11 125
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|++++|++
T Consensus 384 i~y~~q~~ 391 (635)
T PRK11147 384 VAYFDQHR 391 (635)
T ss_pred EEEEeCcc
Confidence 78888864
No 287
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.42 E-value=1.3e-13 Score=103.74 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=60.8
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+|+||||||||++.|+|++.|..|.+.+++.. ....+....+
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~----i~~~~~~~lr 526 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD----LAGLDVQAVR 526 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE----cCcCCHHHHH
Confidence 5888998 67842 34566666 89999999999999999999999999999999865531 1222233446
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 527 ~~i~~v~Q~~~ 537 (686)
T TIGR03797 527 RQLGVVLQNGR 537 (686)
T ss_pred hccEEEccCCc
Confidence 78999999873
No 288
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.41 E-value=1.2e-13 Score=102.01 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=58.9
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.++++|+ ..|.+ ..++++++ |+.++|+|+||||||||+++|+|+++|..|.+.+++... ........+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i----~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL----RDYTLASLR 416 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh----hhcCHHHHH
Confidence 5888888 67754 33566665 899999999999999999999999999999998655321 111222235
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 417 ~~i~~v~Q~~ 426 (582)
T PRK11176 417 NQVALVSQNV 426 (582)
T ss_pred hhceEEccCc
Confidence 6799999986
No 289
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=3.6e-13 Score=100.69 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=53.7
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.. ...|
T Consensus 313 l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i 377 (638)
T PRK10636 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK---------------GIKL 377 (638)
T ss_pred EEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC---------------CEEE
Confidence 778888 7787766677666 899999999999999999999999999999876321 1358
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|+.
T Consensus 378 gy~~Q~~ 384 (638)
T PRK10636 378 GYFAQHQ 384 (638)
T ss_pred EEecCcc
Confidence 8888864
No 290
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.41 E-value=1.2e-13 Score=104.06 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=60.2
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+|+||||||||+++|+|++.|..|.+.+++... ...+....+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i----~~~~~~~lr 552 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPR----EEIPREVLA 552 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeH----HHCCHHHHH
Confidence 5788888 67864 34566666 899999999999999999999999999999998655311 122223346
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 553 ~~i~~v~Q~~ 562 (710)
T TIGR03796 553 NSVAMVDQDI 562 (710)
T ss_pred hheeEEecCC
Confidence 7899999986
No 291
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=2.7e-13 Score=87.93 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=43.2
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|+++|+ +.|.+..++ +++ |++++|+|+||||||||+++|+|++.+..|.+.+.+
T Consensus 2 l~~~~l~~~~~~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (195)
T PRK13541 2 LSLHQLQFNIEQKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN 61 (195)
T ss_pred eEEEEeeEEECCcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 456777 566654433 344 889999999999999999999999999999987544
No 292
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.41 E-value=1.4e-13 Score=87.49 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=57.8
Q ss_pred EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868 5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
.|+++++ +...+ ..++++++ ++.++|+||+||||||||-.++|+-.+++|.++..++...-...+....-
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 4666666 43332 23455554 89999999999999999999999999999999866643222222222333
Q ss_pred eeEEEEEEEecC
Q psy16868 75 VNAYVEIVFDNT 86 (109)
Q Consensus 75 ~~~~i~~~fq~~ 86 (109)
+.+.|++|||+.
T Consensus 86 R~~~vGfVFQSF 97 (228)
T COG4181 86 RARHVGFVFQSF 97 (228)
T ss_pred hccceeEEEEee
Confidence 457899999985
No 293
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.4e-13 Score=102.68 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=45.4
Q ss_pred EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.+..|.+.+.+
T Consensus 13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g 77 (623)
T PRK10261 13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77 (623)
T ss_pred EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECC
Confidence 788888 77852 34566665 899999999999999999999999999889876433
No 294
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=2.4e-13 Score=90.46 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=50.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++.++ ++|++..++++++ |++.+++|+|||||||.+++|.+++.++.|.+.+.+
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g 63 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG 63 (300)
T ss_pred eEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcC
Confidence 788999 8999998888776 899999999999999999999999999999988554
No 295
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=5.6e-14 Score=90.84 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=57.5
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
..+++.|+ .+|+...++.+++ |++.+|+||||+||||+|++|+|-..|+.|.+.+.+. .++..... ..-.+.
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~-~dl~~~~e-~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGD-TDLTKLPE-HRIARA 81 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCc-hhhccCCH-HHHHHh
Confidence 35677777 6676666555554 8999999999999999999999999999999886552 22222211 122245
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+=-||-|.
T Consensus 82 GIGRKFQ~Pt 91 (249)
T COG4674 82 GIGRKFQKPT 91 (249)
T ss_pred ccCccccCCe
Confidence 6676777663
No 296
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.40 E-value=7.5e-14 Score=101.63 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=54.5
Q ss_pred EEEece-eec---CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-CcccccccchhhhhhhcCCCCcee
Q psy16868 6 VIIHGF-KSY---KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-ESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 6 i~i~n~-~~~---~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
|+++|+ ..| ....++++++ |++++|+||||||||||+++|+|++.| ..|.+.+.+... .........
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~---~~~~~~~~~ 334 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV---DIRNPAQAI 334 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC---CCCCHHHHH
Confidence 778888 566 2334566665 899999999999999999999999985 789887544211 110011112
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|++++|++
T Consensus 335 ~~~i~~v~q~~ 345 (500)
T TIGR02633 335 RAGIAMVPEDR 345 (500)
T ss_pred hCCCEEcCcch
Confidence 45689999985
No 297
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.40 E-value=2.4e-13 Score=87.21 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=42.0
Q ss_pred Eece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 8 IHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 8 i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
++|+ +.|.+..++++++ +++++|+||||||||||+++|+|++.+..|.+.+.+
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g 60 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 3455 4565544555554 889999999999999999999999999999887544
No 298
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2.6e-13 Score=101.45 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=47.1
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~ 59 (109)
|+++|+ ++|+...++++++ |++++|+|||||||||||++|+|.+.|..|.+.+.
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~ 61 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFP 61 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence 678888 7888777677776 89999999999999999999999999999987643
No 299
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=4.4e-13 Score=90.75 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=48.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
.++++|.|++|||||||+++|+|+..|..|.+..++....-...+...+..+++|+||||+..
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR 86 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR 86 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc
Confidence 389999999999999999999999999999998665411111122334556789999999863
No 300
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.40 E-value=2.6e-13 Score=99.78 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=59.6
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.++++|+ .+|.+ ..++++++ |+.++|+||||||||||++.|+|++.|..|.+.+++... ........+.
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~----~~~~~~~~~~ 397 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV----TAEQPEDYRK 397 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC----CCCCHHHHhh
Confidence 5888888 67854 34577766 899999999999999999999999999999988655311 1122223356
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 398 ~i~~v~q~~ 406 (547)
T PRK10522 398 LFSAVFTDF 406 (547)
T ss_pred heEEEecCh
Confidence 799999986
No 301
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.40 E-value=1.8e-13 Score=103.22 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=60.1
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+|+||||||||++.|+|++.|+.|.+.+++... ...+....+.
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i----~~~~~~~lr~ 548 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL----KDIDRHTLRQ 548 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH----HHcCHHHHHH
Confidence 4788888 67753 34566666 899999999999999999999999999999998665321 1222333467
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 549 ~i~~v~Q~~ 557 (708)
T TIGR01193 549 FINYLPQEP 557 (708)
T ss_pred heEEEecCc
Confidence 899999986
No 302
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.39 E-value=3.2e-13 Score=100.94 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=46.9
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH 58 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~ 58 (109)
|+++|+ ++|.+..++++++ |++++|+|||||||||||++|+|++.|..|.+.+
T Consensus 4 l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred EEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 788998 7888776677766 8899999999999999999999999999998764
No 303
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.39 E-value=2.3e-13 Score=99.65 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=59.5
Q ss_pred EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+. .++++++ |+.++|+||||||||||+++|+|+.+|..|.+.+++... ........+
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i----~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL----ADADADSWR 395 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh----hhCCHHHHH
Confidence 5888888 678652 3566665 899999999999999999999999999999988554311 112223345
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
+.|++++|++
T Consensus 396 ~~i~~v~Q~~ 405 (529)
T TIGR02857 396 DQIAWVPQHP 405 (529)
T ss_pred hheEEEcCCC
Confidence 6799999986
No 304
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.39 E-value=3.7e-13 Score=89.71 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=48.0
Q ss_pred cCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEec
Q psy16868 14 YKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDN 85 (109)
Q Consensus 14 ~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~ 85 (109)
|....++++++ +++++|+|+||||||||+++|+|++.|..|.+.+.+.. ... ........++++++.
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~---~~~--~~~~~~~~i~~~~~~ 102 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV---PWK--RRKKFLRRIGVVFGQ 102 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE---ccc--cchhhcccEEEEcCC
Confidence 44445566655 89999999999999999999999999999998754421 111 111224568888854
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.39 E-value=3.2e-13 Score=98.83 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=55.7
Q ss_pred EEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccccc-chh-hhhhhcC-CC
Q psy16868 6 VIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS-DSR-QALLHEG-TG 71 (109)
Q Consensus 6 i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~-~~~-~~~~~~~-~~ 71 (109)
|+++|+ +.|.. ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+. +.. .++.... ..
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~ 359 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359 (520)
T ss_pred EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhh
Confidence 778888 67742 34566665 89999999999999999999999999999998753 210 0010000 00
Q ss_pred CceeeEEEEEEEecCC
Q psy16868 72 PRVVNAYVEIVFDNTD 87 (109)
Q Consensus 72 ~~~~~~~i~~~fq~~~ 87 (109)
....+..|+++||++.
T Consensus 360 ~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 360 RGRAKRYIGILHQEYD 375 (520)
T ss_pred HHHHhhhEEEEccCcc
Confidence 0111346999999853
No 306
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=2.8e-13 Score=85.09 Aligned_cols=56 Identities=25% Similarity=0.195 Sum_probs=40.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEe
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFD 84 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq 84 (109)
+++++|+|+||+|||||+++|+|++.+..|.+.+.+.... ..........++++||
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~----~~~~~~~~~~i~~~~q 80 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA----KLPLEELRRRIGYVPQ 80 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc----cCCHHHHHhceEEEee
Confidence 7899999999999999999999999999998875542110 0011112356788877
No 307
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=1.1e-13 Score=87.41 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=60.2
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcC--CCCceee
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEG--TGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 76 (109)
.|+++|+ ..|+..+++++++ |+..+++||+|+|||||++.|..+..|.+|.+...++.-++-... +.....+
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 4778888 6788877776665 889999999999999999999999999999877554322221111 1123446
Q ss_pred EEEEEEEec
Q psy16868 77 AYVEIVFDN 85 (109)
Q Consensus 77 ~~i~~~fq~ 85 (109)
..|+||||.
T Consensus 82 ~~vgmvfqq 90 (242)
T COG4161 82 RNVGMVFQQ 90 (242)
T ss_pred Hhhhhhhhh
Confidence 789999986
No 308
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.2e-13 Score=100.75 Aligned_cols=78 Identities=6% Similarity=0.050 Sum_probs=54.1
Q ss_pred EEEece-eecC---CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-cCcccccccchhhhhhhcCCCCcee
Q psy16868 6 VIIHGF-KSYK---EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-DESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 6 i~i~n~-~~~~---~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
|+++|+ +.|. ...++++++ |++++|+|+||||||||+++|+|++. +..|.+.+.+.. + .........
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~--~-~~~~~~~~~ 336 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP--V-KIRNPQQAI 336 (506)
T ss_pred EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEE--C-CCCCHHHHH
Confidence 678888 6673 234455555 89999999999999999999999998 488998754421 1 100000112
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|++++|++
T Consensus 337 ~~~i~~v~q~~ 347 (506)
T PRK13549 337 AQGIAMVPEDR 347 (506)
T ss_pred HCCCEEeCcch
Confidence 34689999985
No 309
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.2e-13 Score=100.77 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=52.7
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|. .++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.. +.........+..|
T Consensus 266 l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~---~~~~~~~~~~~~~i 340 (510)
T PRK09700 266 FEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD---ISPRSPLDAVKKGM 340 (510)
T ss_pred EEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE---CCCCCHHHHHHCCc
Confidence 778887 4443 2355554 89999999999999999999999999999998754421 11100001123468
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
+++||++
T Consensus 341 ~~v~q~~ 347 (510)
T PRK09700 341 AYITESR 347 (510)
T ss_pred EEccCcc
Confidence 9999974
No 310
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.38 E-value=1.2e-13 Score=97.72 Aligned_cols=75 Identities=20% Similarity=0.153 Sum_probs=50.2
Q ss_pred ecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhh--hhhhcC-CCCc-eeeEEEEEEE
Q psy16868 13 SYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQ--ALLHEG-TGPR-VVNAYVEIVF 83 (109)
Q Consensus 13 ~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~--~~~~~~-~~~~-~~~~~i~~~f 83 (109)
.|+...++++++ |++++|+|+||||||||+++|+|++.|+.|.+.+.+... +..... .... ..+..|+++|
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 344444455544 899999999999999999999999999999988554210 111000 0001 1125799999
Q ss_pred ecCC
Q psy16868 84 DNTD 87 (109)
Q Consensus 84 q~~~ 87 (109)
|++.
T Consensus 113 Q~~~ 116 (382)
T TIGR03415 113 QKFA 116 (382)
T ss_pred CCCc
Confidence 9863
No 311
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.38 E-value=3.4e-13 Score=99.86 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=59.9
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ ..|.+ ..++++++ |+.++|+|+||||||||++.|+|+..|..|.+.+++... ........+.
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i----~~~~~~~~r~ 409 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI----RTVTRASLRR 409 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh----hhCCHHHHHh
Confidence 4788888 67754 34566666 899999999999999999999999999999988655311 1222233467
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 410 ~i~~v~Q~~ 418 (588)
T PRK13657 410 NIAVVFQDA 418 (588)
T ss_pred heEEEecCc
Confidence 799999986
No 312
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=3.5e-14 Score=90.97 Aligned_cols=83 Identities=22% Similarity=0.373 Sum_probs=63.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC--------
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-------- 70 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-------- 70 (109)
.+++.|+ +.|++..+++.++ |+++.|+|.+||||||+|+||..+..|..|.+..+++...+.....
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 6888999 8999887777776 8999999999999999999999999999999886654332222211
Q ss_pred -CCceeeEEEEEEEecCC
Q psy16868 71 -GPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 71 -~~~~~~~~i~~~fq~~~ 87 (109)
.....+...+||||+.+
T Consensus 86 ~q~~r~Rs~L~mVFQ~FN 103 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFN 103 (256)
T ss_pred HHHHHHHHHhhHhhhhcc
Confidence 11233567899999864
No 313
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.38 E-value=3.4e-13 Score=99.91 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=59.7
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.++++|. ..|.+ ..++++++ |+.++|+|+||||||||+++|+|++.|..|.+.+++... ...+....+.
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i----~~~~~~~l~~ 415 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL----SSLSHSVLRQ 415 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh----hhCCHHHHHh
Confidence 4788887 56754 34566666 899999999999999999999999999999988655311 2222334467
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 416 ~i~~v~Q~~ 424 (592)
T PRK10790 416 GVAMVQQDP 424 (592)
T ss_pred heEEEccCC
Confidence 899999987
No 314
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=3.3e-13 Score=88.59 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
.++++|+||||||||||+++|+|++.|..|.+.+.+...............+..+++++|++
T Consensus 23 ~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred ceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 48999999999999999999999999999998755431100000001111245789999886
No 315
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.38 E-value=3.4e-13 Score=99.75 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=59.7
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ ..|.+ ..++++++ |+.++|+||||||||||++.|++++.|..|.+.+++.. ....+....+
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~----i~~~~~~~~r 413 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP----IADYSEAALR 413 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE----hhhCCHHHHH
Confidence 4788888 67754 34566666 89999999999999999999999999999998865531 1122223346
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 414 ~~i~~v~Q~~ 423 (574)
T PRK11160 414 QAISVVSQRV 423 (574)
T ss_pred hheeEEcccc
Confidence 7799999986
No 316
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.38 E-value=1e-12 Score=89.83 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=41.5
Q ss_pred EEEEeceeecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 5 QVIIHGFKSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 5 ~i~i~n~~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.|+++|+... ...++++++ |++++|+|+||||||||+++|+|++.|..|.+.
T Consensus 39 ~l~i~nls~~-~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~ 95 (282)
T cd03291 39 NLFFSNLCLV-GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK 95 (282)
T ss_pred eEEEEEEEEe-cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4677777322 334465555 889999999999999999999999999999876
No 317
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=7.9e-13 Score=92.10 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=56.2
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCC
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTG 71 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~ 71 (109)
.|+++|+ ..|.+ ..++++++ |++++|+|+||||||||+++|+++.. +..|.+.+.+... ......
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i--~~~~~~ 157 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT--RSKKIS 157 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc--cccccc
Confidence 4778888 67743 34566665 89999999999999999999999986 3578877554311 000111
Q ss_pred CceeeEEEEEEEecCC
Q psy16868 72 PRVVNAYVEIVFDNTD 87 (109)
Q Consensus 72 ~~~~~~~i~~~fq~~~ 87 (109)
....+..++++||++.
T Consensus 158 ~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 158 SLELRTRIGMVFQKPT 173 (329)
T ss_pred hHhhhccEEEEecCCc
Confidence 1123567999999864
No 318
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.37 E-value=3.8e-13 Score=89.01 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=46.3
Q ss_pred eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc---cCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS---DESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
.++++++ +++++|+||||||||||+++|+|++. +..|.+.+.+.... ....+..++++||++
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~-------~~~~~~~i~~~~q~~ 90 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK-------PDQFQKCVAYVRQDD 90 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC-------hHHhcccEEEeCCCC
Confidence 3455554 88999999999999999999999998 88898875442111 112356789999875
No 319
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.37 E-value=2.3e-13 Score=98.99 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=68.1
Q ss_pred EEEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC----cccccccchhhhhhhcCC
Q psy16868 5 QVIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE----STSLRHSDSRQALLHEGT 70 (109)
Q Consensus 5 ~i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~----~~~~~~~~~~~~~~~~~~ 70 (109)
-|+++|+ ..|... .++++++ |++++|+|++||||||+..+|.++++.. .|.+.+.+....-.....
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5788887 556443 3566666 8999999999999999999999999866 577776553111111111
Q ss_pred CCceeeEEEEEEEecCCCCCceeEEEeeccee
Q psy16868 71 GPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVD 102 (109)
Q Consensus 71 ~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~ 102 (109)
........|+++||+|...+.+..+...+..+
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 12234578999999999888776655554443
No 320
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.37 E-value=4.2e-12 Score=95.22 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=56.4
Q ss_pred CeeeEEEEeceeecCCCeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCccc--cccc----chhhhhhhcCC
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS--LRHS----DSRQALLHEGT 70 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~--~~~~----~~~~~~~~~~~ 70 (109)
|+|.+|.+.||+.|.+.+.+ +|+ ..+++|+||||+|||||++||.+++++.... ..-. ......+....
T Consensus 1 M~i~~l~l~nf~~~~~~~~~-~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~ 79 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTF-DLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQA 79 (650)
T ss_pred CcccEEEEeceEEEcCCcee-eeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccC
Confidence 99999999999888765434 443 2489999999999999999999999765432 1100 00111222221
Q ss_pred CCceeeEEEEEEEecCC
Q psy16868 71 GPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 71 ~~~~~~~~i~~~fq~~~ 87 (109)
.....+.|+++|.+..
T Consensus 80 -~~~~~~~V~l~f~~~~ 95 (650)
T TIGR03185 80 -GKTNPASITLTFSVVE 95 (650)
T ss_pred -CCCCCeEEEEEEEEcc
Confidence 1234678999997654
No 321
>KOG0979|consensus
Probab=99.37 E-value=4.9e-12 Score=96.15 Aligned_cols=99 Identities=22% Similarity=0.339 Sum_probs=72.9
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV 82 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (109)
|-+|++.||..|.... + .+.+.++.|+||||+||||++-|||..+.++..-+-.......++..|.. ..+|++.
T Consensus 22 IvrI~l~NF~Ty~~~e-~-~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~----~g~IEI~ 95 (1072)
T KOG0979|consen 22 IVRIELHNFLTYDHTE-F-LPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGED----EGYIEIE 95 (1072)
T ss_pred eEEEEEeeeeeeeeee-e-cCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCc----cceEEEE
Confidence 5689999999887655 4 55578999999999999999999999998665333224445567777776 6788888
Q ss_pred EecCCCCCceeEEEeecceeeeeee
Q psy16868 83 FDNTDHRVPGFIRCRSTSVDLYRCS 107 (109)
Q Consensus 83 fq~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
.-+.+....+.+.+.......|.+|
T Consensus 96 l~~~~e~~~ItR~I~~~k~S~y~iN 120 (1072)
T KOG0979|consen 96 LKDKDETLTITRLISRDKESKYFIN 120 (1072)
T ss_pred EecCCCceEEEEEEeecCCcceeec
Confidence 7777666666665555555555544
No 322
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=1.7e-12 Score=103.27 Aligned_cols=84 Identities=17% Similarity=0.366 Sum_probs=55.9
Q ss_pred eeeEEEEeceeecCC----CeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC--CCcee
Q psy16868 2 YIKQVIIHGFKSYKE----QTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT--GPRVV 75 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~----~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~ 75 (109)
++.+|.|.||++|.+ .+.+ +|+.++++|+||||||||||++||++++++....-. .+ ..++.... .....
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I-~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~-~g--~~~i~~~~~~~~~~~ 77 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQII-DFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGT-KG--NTFVHDPKVAQETDV 77 (1311)
T ss_pred ccceeeeeceecCCCccccceee-ecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CC--ceEecCCCcCccHhh
Confidence 467899999999963 4446 788899999999999999999999988864321100 00 01121111 11234
Q ss_pred eEEEEEEEecCCCC
Q psy16868 76 NAYVEIVFDNTDHR 89 (109)
Q Consensus 76 ~~~i~~~fq~~~~~ 89 (109)
.+.|.++|++.++.
T Consensus 78 ~a~V~l~F~~~~g~ 91 (1311)
T TIGR00606 78 RAQIRLQFRDVNGE 91 (1311)
T ss_pred hheeEEEEEcCCCC
Confidence 67899999754443
No 323
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.36 E-value=4.3e-13 Score=101.30 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=59.5
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|+ ..|.+ ..++++++ |+.++|+||||||||||+++|.+++.|..|.+.+++... ..-.....
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i----~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL----VQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH----HhcCHHHH
Confidence 5888988 67753 34566666 899999999999999999999999999999988655311 11122334
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|++++|++
T Consensus 554 r~~i~~v~Q~~ 564 (711)
T TIGR00958 554 HRQVALVGQEP 564 (711)
T ss_pred HhhceEEecCc
Confidence 56799999986
No 324
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.36 E-value=4.1e-13 Score=98.47 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=54.4
Q ss_pred EEEece-eecC-----------CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc
Q psy16868 6 VIIHGF-KSYK-----------EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE 68 (109)
Q Consensus 6 i~i~n~-~~~~-----------~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~ 68 (109)
|+++|+ +.|. +..++++++ |++++|+||||||||||+++|+|+++ ..|.+.+.+...... .
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~-~ 353 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL-N 353 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc-c
Confidence 677887 6674 234566666 89999999999999999999999985 788887544211000 0
Q ss_pred CCCCceeeEEEEEEEecCC
Q psy16868 69 GTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 69 ~~~~~~~~~~i~~~fq~~~ 87 (109)
.......+..|+++||++.
T Consensus 354 ~~~~~~~~~~i~~v~q~~~ 372 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPN 372 (529)
T ss_pred hhhHHHhhhceEEEEeCch
Confidence 0000112356999999863
No 325
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.36 E-value=4.4e-13 Score=100.94 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=60.0
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+|+||||||||++.|+|++.|..|.+.+++.. ....+....+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~----l~~~~~~~lr 538 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD----IRQIDPADLR 538 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE----hhhCCHHHHH
Confidence 5888888 77853 33566666 89999999999999999999999999999998855531 1222233346
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 539 ~~i~~v~Q~~ 548 (694)
T TIGR03375 539 RNIGYVPQDP 548 (694)
T ss_pred hccEEECCCh
Confidence 7899999986
No 326
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.36 E-value=1.3e-12 Score=95.58 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=56.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|++.|+ ..|.++.++.+.+ |+.++|||+|||||||||++|+|.+.|..|.+.... ..+
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~---------------~~~ 67 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------------GLR 67 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC---------------Cce
Confidence 3888999 8898887776665 899999999999999999999999999999876111 246
Q ss_pred EEEEEecCCCC
Q psy16868 79 VEIVFDNTDHR 89 (109)
Q Consensus 79 i~~~fq~~~~~ 89 (109)
|+++.|++...
T Consensus 68 v~~l~Q~~~~~ 78 (530)
T COG0488 68 VGYLSQEPPLD 78 (530)
T ss_pred EEEeCCCCCcC
Confidence 77887776543
No 327
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.36 E-value=4.4e-13 Score=99.24 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=57.8
Q ss_pred EEEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ ..| .+..++++++ |+.++|+||||||||||++.|++++ |..|.+.+++.. ..+.+....+.
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~----i~~~~~~~lr~ 423 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIE----LRELDPESWRK 423 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEe----cccCCHHHHHh
Confidence 4788887 344 4445666665 8999999999999999999999999 889998855531 12222333467
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 424 ~i~~v~Q~~ 432 (588)
T PRK11174 424 HLSWVGQNP 432 (588)
T ss_pred heEEecCCC
Confidence 899999987
No 328
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.35 E-value=4.1e-13 Score=98.95 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=58.7
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.++++|+ .+|.+ ..++++++ |+.++|+|+||||||||+++|+|+..|..|.+.+++... ........+
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i----~~~~~~~~~ 405 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL----ADYTLASLR 405 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH----HhcCHHHHH
Confidence 5888888 67754 33455554 899999999999999999999999999999998655321 122223346
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 406 ~~i~~v~Q~~ 415 (571)
T TIGR02203 406 RQVALVSQDV 415 (571)
T ss_pred hhceEEccCc
Confidence 7799999987
No 329
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=7.4e-13 Score=85.80 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=54.1
Q ss_pred EEEEece-eecCCCe--eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKEQT--VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~--~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.+.++++ -+|..+. ++.+++ +++++++||+||||||||+.++|+..|..|.+..++. ...+. .
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r----~i~gP-----g 73 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR----RIEGP-----G 73 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE----eccCC-----C
Confidence 4666777 6676654 455555 8999999999999999999999999999999874432 11111 3
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
+.-++|||++
T Consensus 74 aergvVFQ~~ 83 (259)
T COG4525 74 AERGVVFQNE 83 (259)
T ss_pred ccceeEeccC
Confidence 4458899986
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.34 E-value=2.2e-12 Score=97.48 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=52.7
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ +.|.+ ..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.. ..
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~---------------~~ 572 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA---------------KV 572 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC---------------ce
Confidence 3778888 67753 34566665 889999999999999999999999999999876211 24
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 573 ~igyv~Q~~ 581 (718)
T PLN03073 573 RMAVFSQHH 581 (718)
T ss_pred eEEEEeccc
Confidence 688899875
No 331
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.34 E-value=6e-13 Score=88.32 Aligned_cols=57 Identities=21% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc----CcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD----ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
+++++|+||||||||||+++|+|++.| ..|.+.+.+.... .. ......|++++|++.
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~---~~---~~~~~~i~~~~q~~~ 72 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL---PL---SIRGRHIATIMQNPR 72 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEech---hh---hhhhheeEEEecCch
Confidence 889999999999999999999999998 7888875543111 10 111357999999874
No 332
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.34 E-value=6.5e-13 Score=98.45 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=58.3
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.++++|+ ..|.+ ..++.+++ |+.++|+||||||||||++.|+|++.|..|.+.+++... ...+....+.
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~----~~~~~~~~~~ 409 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI----NTVTRESLRK 409 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh----hhCCHHHHHh
Confidence 4788888 67864 33455555 899999999999999999999999999999988554311 1112223356
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.+++++|++
T Consensus 410 ~i~~v~q~~ 418 (585)
T TIGR01192 410 SIATVFQDA 418 (585)
T ss_pred heEEEccCC
Confidence 799999986
No 333
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.34 E-value=5.1e-13 Score=98.57 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=61.1
Q ss_pred EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|. ..|. +..++++++ |+.++|+||+|||||||++.|.+++.+..|.+..++. ..........+.
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~----dI~~i~~~~lr~ 403 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGI----DIRDISLDSLRK 403 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCE----ehhhcCHHHHHH
Confidence 4888998 7787 455666666 8999999999999999999999999999999985332 222233344578
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++++|++
T Consensus 404 ~I~~V~Qd~ 412 (567)
T COG1132 404 RIGIVSQDP 412 (567)
T ss_pred hccEEcccc
Confidence 899999986
No 334
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.34 E-value=7.2e-13 Score=97.43 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=58.0
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.++++|+ ..|.+ ..++++++ |+.++|+||||||||||+++|+|.+.|..|.+.+++... ........+
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i----~~~~~~~~~ 391 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL----KQWDRETFG 391 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh----hhCCHHHHh
Confidence 4788888 67753 34566665 899999999999999999999999999999987554311 111222335
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..+++++|++
T Consensus 392 ~~i~~v~q~~ 401 (544)
T TIGR01842 392 KHIGYLPQDV 401 (544)
T ss_pred hheEEecCCc
Confidence 6799999985
No 335
>KOG0057|consensus
Probab=99.34 E-value=1.1e-12 Score=95.07 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=61.4
Q ss_pred EEEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|++.|. ..|.+.+ +++.++ |+.++|+|+|||||||++++|...+. .+|.+..++.+. +.......+.
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~di----k~~~~~SlR~ 425 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDI----KEVSLESLRQ 425 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeH----hhhChHHhhh
Confidence 5788888 7787766 777776 89999999999999999999999998 889988666422 2233444578
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++|+|+.
T Consensus 426 ~Ig~VPQd~ 434 (591)
T KOG0057|consen 426 SIGVVPQDS 434 (591)
T ss_pred heeEeCCcc
Confidence 899999985
No 336
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.34 E-value=5.9e-13 Score=98.26 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=57.8
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+|+||||||||+++|+|++.|..|.+.+++... ........
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i----~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL----RQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH----HhcCHHHH
Confidence 5888888 67753 23455555 899999999999999999999999999999988555311 11122223
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..+++++|++
T Consensus 413 ~~~i~~~~Q~~ 423 (576)
T TIGR02204 413 RARMALVPQDP 423 (576)
T ss_pred HHhceEEccCC
Confidence 56799999986
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.34 E-value=9.2e-13 Score=84.54 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=38.3
Q ss_pred eecCCCeeEecC----CCCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868 12 KSYKEQTVVEPF----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59 (109)
Q Consensus 12 ~~~~~~~~l~~~----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~ 59 (109)
+.|++..++.+. .+++++|+||||||||||+++|+|++.|..|.+.+.
T Consensus 8 ~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 59 (177)
T cd03222 8 KRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD 59 (177)
T ss_pred EEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEEC
Confidence 455555444332 288999999999999999999999999999998743
No 338
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=6.9e-13 Score=96.50 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=57.1
Q ss_pred EEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
++.+|+ ..|.+. .++.+++ ++.++|+|+||||||||+++|.|++.|..|.+.+++... .+.....-++.
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l----~~l~~~~~~k~ 396 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL----RDLSPEAWRKQ 396 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc----cccCHHHHHhH
Confidence 344588 677664 4455665 899999999999999999999999999999998665322 12222223567
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
+.++.|+|
T Consensus 397 i~~v~Q~p 404 (559)
T COG4988 397 ISWVSQNP 404 (559)
T ss_pred eeeeCCCC
Confidence 88888887
No 339
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.7e-13 Score=84.85 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=33.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
++.+.|.||||+||||||++|+|++.|..|++.+.+
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence 899999999999999999999999999999988553
No 340
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.32 E-value=5.4e-14 Score=89.11 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=47.6
Q ss_pred CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 16 EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 16 ~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
+..++++++ |+..+|+||+|||||||+++++.+..|++|.+.+.++. + ....+...++.|+++-|.|
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~---v-s~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGED---V-STLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcc---c-cccChHHHHHHHHHHHcCc
Confidence 344555555 89999999999999999999999999999998866541 1 1222233345566555544
No 341
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.32 E-value=8.1e-13 Score=97.43 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred EEEEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc
Q psy16868 5 QVIIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (109)
.|+++|+ .+|.+. .++++++ |+.++|+||||||||||++.|++++.|..|.+.+++... ......
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i----~~~~~~ 412 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAV----SADSRD 412 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC----CCCCHH
Confidence 5888888 778642 2566665 899999999999999999999999999999988554311 111222
Q ss_pred eeeEEEEEEEecC
Q psy16868 74 VVNAYVEIVFDNT 86 (109)
Q Consensus 74 ~~~~~i~~~fq~~ 86 (109)
..+..+++++|++
T Consensus 413 ~~~~~i~~v~q~~ 425 (555)
T TIGR01194 413 DYRDLFSAIFADF 425 (555)
T ss_pred HHHhhCcEEccCh
Confidence 2356789999875
No 342
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.32 E-value=9.6e-13 Score=97.26 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=56.7
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|. .+|.. ..++++++ |+.++|+||||||||||+++|+|++.|..|.+.+++... ...+....+
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~----~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL----TKLQLDSWR 388 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEH----hhCCHHHHH
Confidence 3677776 56643 33465655 899999999999999999999999999999988554311 111222335
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 389 ~~i~~v~q~~ 398 (569)
T PRK10789 389 SRLAVVSQTP 398 (569)
T ss_pred hheEEEccCC
Confidence 6789999885
No 343
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.32 E-value=1.4e-12 Score=95.38 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=43.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCccccccc
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHS 59 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~ 59 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++ .|..|.+.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 356777 6776655666665 8999999999999999999999997 5888887643
No 344
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.30 E-value=2.6e-13 Score=83.15 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=43.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
+++++|+|+||||||||+++|+|...+..|.+.+.+.... .......+..+++++|++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~----~~~~~~~~~~i~~~~~~~ 68 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDIS----DIDIEELRRRIGYVPQDP 68 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGT----TSHHHHHHHTEEEEESSH
T ss_pred CCEEEEEccCCCccccceeeeccccccccccccccccccc----cccccccccccccccccc
Confidence 7899999999999999999999999999999875442111 111222356788888873
No 345
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.30 E-value=1.1e-12 Score=98.24 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=56.7
Q ss_pred EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC--
Q psy16868 5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP-- 72 (109)
Q Consensus 5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 72 (109)
-|+++|+ +.|.+ ..++++++ +++++|+|+||||||||+++|+|++++..|.+.+++.... ......
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~--~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA--TLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcC--cCCHHHHH
Confidence 4788898 67743 23566655 8999999999999999999999999999999875543111 000000
Q ss_pred ceeeEEEEEEEecC
Q psy16868 73 RVVNAYVEIVFDNT 86 (109)
Q Consensus 73 ~~~~~~i~~~fq~~ 86 (109)
...+..++++||++
T Consensus 82 ~~~~~~i~~v~q~~ 95 (648)
T PRK10535 82 QLRREHFGFIFQRY 95 (648)
T ss_pred HHHhccEEEEeCCc
Confidence 01145799999987
No 346
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.30 E-value=1.3e-12 Score=98.45 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=58.6
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ ..|.+ ..++++++ |+.++|+|+||||||||+++|+|+..|..|.+.+++... ...+....+
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i----~~~~~~~~r 530 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL----AIADPAWLR 530 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh----hhCCHHHHH
Confidence 5788888 67753 33566665 899999999999999999999999999999998655311 112222335
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 531 ~~i~~v~q~~ 540 (694)
T TIGR01846 531 RQMGVVLQEN 540 (694)
T ss_pred HhCeEEccCC
Confidence 6799999985
No 347
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.30 E-value=2.4e-12 Score=105.17 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=59.4
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ +.|++ ..++++++ |++++|+||||||||||+++|+|++.|+.|.+.+.+... .. .....+
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i---~~--~~~~~r 2011 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI---LT--NISDVH 2011 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC---cc--hHHHHh
Confidence 4788999 78875 45677766 899999999999999999999999999999988655311 11 111224
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 2012 ~~IGy~pQ~~~ 2022 (2272)
T TIGR01257 2012 QNMGYCPQFDA 2022 (2272)
T ss_pred hhEEEEecccc
Confidence 57999999853
No 348
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.29 E-value=1.7e-12 Score=103.93 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=58.7
Q ss_pred EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|+ ..|... .++++++ |+.++|+||||||||||+++|++++.|..|.+.+.+. .++ ........
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g-~~i--~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS-HNL--KDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCC-cch--hhCCHHHH
Confidence 5888998 778642 4566666 8999999999999999999999999999999885321 111 11122223
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|++++|++
T Consensus 459 r~~Ig~V~Q~~ 469 (1466)
T PTZ00265 459 RSKIGVVSQDP 469 (1466)
T ss_pred HHhccEecccc
Confidence 56799999986
No 349
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.29 E-value=2.3e-12 Score=105.28 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=58.8
Q ss_pred EEEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ +.|. +..++++++ |++++|+|+||||||||+++|+|++.|+.|.+.+.+... .. .....+
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI---~~--~~~~~r 1002 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI---ET--NLDAVR 1002 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEEC---cc--hHHHHh
Confidence 5788999 7784 355677766 899999999999999999999999999999987554311 11 111234
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
+.+++++|++
T Consensus 1003 ~~IG~~pQ~~ 1012 (2272)
T TIGR01257 1003 QSLGMCPQHN 1012 (2272)
T ss_pred hcEEEEecCC
Confidence 6799999986
No 350
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.27 E-value=9.1e-13 Score=95.86 Aligned_cols=76 Identities=7% Similarity=0.109 Sum_probs=50.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ ..+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..+
T Consensus 251 i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i---~~~~~~~~~~~~i 325 (491)
T PRK10982 251 LEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI---NNHNANEAINHGF 325 (491)
T ss_pred EEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEEC---CCCCHHHHHHCCC
Confidence 677777 332 22344444 899999999999999999999999999999987544211 0000001113447
Q ss_pred EEEEecC
Q psy16868 80 EIVFDNT 86 (109)
Q Consensus 80 ~~~fq~~ 86 (109)
++++|++
T Consensus 326 ~~~~q~~ 332 (491)
T PRK10982 326 ALVTEER 332 (491)
T ss_pred EEcCCch
Confidence 7888764
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.27 E-value=6.8e-12 Score=94.23 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=52.5
Q ss_pred EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ ..|. +..++++++ |+.++|+||||||||||+++|+|+.++..|.+... .+.
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~---------------~~~ 515 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP---------------AKG 515 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeec---------------CCC
Confidence 4788888 6674 345677666 89999999999999999999999998888876511 035
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.+++++|++
T Consensus 516 ~i~~v~Q~~ 524 (659)
T TIGR00954 516 KLFYVPQRP 524 (659)
T ss_pred cEEEECCCC
Confidence 688888886
No 352
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.27 E-value=2.2e-12 Score=85.29 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=43.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|++++|+|+||||||||+++|+|++.+..|.+.+++... ......++++||++.
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---------~~~~~~i~~v~q~~~ 59 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP---------GKGWRHIGYVPQRHE 59 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc---------hHhhCcEEEeccccc
Confidence 789999999999999999999999999999987554311 012356899999864
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=99.26 E-value=3.1e-12 Score=103.29 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=61.7
Q ss_pred EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+. .++++++ |+.++|+|++|||||||+++|.+++.|..|.+.+++. .....+....+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~----dI~~i~l~~LR 1312 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGC----DISKFGLMDLR 1312 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCE----ecccCCHHHHH
Confidence 4888998 778643 4677776 8999999999999999999999999999999986553 22223334456
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|+|
T Consensus 1313 ~~IsiVpQdp 1322 (1622)
T PLN03130 1313 KVLGIIPQAP 1322 (1622)
T ss_pred hccEEECCCC
Confidence 7899999997
No 354
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=3.2e-12 Score=84.84 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=37.7
Q ss_pred eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccch
Q psy16868 18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61 (109)
Q Consensus 18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~ 61 (109)
.+|++++ |+.++|+|+||||||||++.|+|++.|+.|.+...+.
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~ 89 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK 89 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce
Confidence 3455555 8999999999999999999999999999999875543
No 355
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.25 E-value=2.7e-12 Score=90.67 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=66.5
Q ss_pred eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCCCCCce
Q psy16868 18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPG 92 (109)
Q Consensus 18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~~~~~ 92 (109)
.++++++ ++..+|+|++|||||||=.||..++.+. |.+.|.++..+-. ......+.++.+.+|||+|.+.+.+
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~-~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL-SRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc-ChhhhhhhhhhceEEEeCCCCCCCc
Confidence 3455554 8899999999999999999999999887 9988777543322 2233455678899999999999988
Q ss_pred eEEEeecceeeeee
Q psy16868 93 FIRCRSTSVDLYRC 106 (109)
Q Consensus 93 ~~~~~~~~~~~~~~ 106 (109)
+....+...++.++
T Consensus 379 RmtV~qII~EGL~v 392 (534)
T COG4172 379 RMTVGQIIEEGLRV 392 (534)
T ss_pred ccCHHHHhhhhhhh
Confidence 88777666655443
No 356
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.4e-12 Score=95.11 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=43.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..|++++|++.
T Consensus 279 Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~---~~~~~~~~~~~~i~~~~q~~~ 338 (501)
T PRK11288 279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI---DIRSPRDAIRAGIMLCPEDRK 338 (501)
T ss_pred CcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEEC---CCCCHHHHHhCCCEEcCcCHh
Confidence 899999999999999999999999999999987544211 111111112356889998753
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.25 E-value=1.2e-11 Score=91.85 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=49.9
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
++++|+ +.|.+.. +++++ |++++|+||||||||||+++|+|++.|..|.+.+. ..|
T Consensus 341 l~~~~ls~~~~~~~-l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-----------------~~i 402 (590)
T PRK13409 341 VEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-----------------LKI 402 (590)
T ss_pred EEEcceEEEECCEE-EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------------eeE
Confidence 677888 6676543 54433 89999999999999999999999999999987521 147
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
++++|+..
T Consensus 403 ~y~~Q~~~ 410 (590)
T PRK13409 403 SYKPQYIK 410 (590)
T ss_pred EEeccccc
Confidence 88888754
No 358
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.25 E-value=6.8e-12 Score=84.25 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=31.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
|++++|+||||||||||+++|+|++.|..|.+.
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~ 57 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE 57 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence 789999999999999999999999999999876
No 359
>PLN03232 ABC transporter C family member; Provisional
Probab=99.25 E-value=3.4e-12 Score=102.50 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=61.0
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+|++|||||||+++|.+++.|..|.+.+++.. .........+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~d----i~~i~~~~lR 1309 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD----VAKFGLTDLR 1309 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEE----hhhCCHHHHH
Confidence 4888998 77854 24677776 89999999999999999999999999999999865532 1222233346
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|+|
T Consensus 1310 ~~i~iVpQdp 1319 (1495)
T PLN03232 1310 RVLSIIPQSP 1319 (1495)
T ss_pred hhcEEECCCC
Confidence 7899999987
No 360
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.24 E-value=3.1e-12 Score=93.29 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=43.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
|++++|+||||||||||+++|+|++.|..|.+.+.+.. +.........+..|++++|++
T Consensus 278 Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~---i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 278 GEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHE---VVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEE---CCCCCHHHHHHCCCEEecCcc
Confidence 89999999999999999999999999999998755421 111000011234699999986
No 361
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.24 E-value=7.7e-12 Score=84.78 Aligned_cols=36 Identities=31% Similarity=0.220 Sum_probs=32.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|++++|+||||||||||+++|+|++.+..|.+.+.+
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g 85 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 899999999999999999999999999999876433
No 362
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.24 E-value=3.8e-12 Score=85.42 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=41.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|++++|+|+||||||||+++|+|++. ..|.+.+.+.. +. ..........++++||++.
T Consensus 22 Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~---i~-~~~~~~~~~~i~~v~q~~~ 79 (248)
T PRK03695 22 GEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQP---LE-AWSAAELARHRAYLSQQQT 79 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEe---cC-cCCHHHHhhheEEecccCc
Confidence 89999999999999999999999985 47887754431 11 1111112345889998753
No 363
>PLN03211 ABC transporter G-25; Provisional
Probab=99.23 E-value=4.1e-12 Score=95.35 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=50.0
Q ss_pred eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC--cccccccchhhhhhhcCCCCceeeEEEEEEEe
Q psy16868 12 KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE--STSLRHSDSRQALLHEGTGPRVVNAYVEIVFD 84 (109)
Q Consensus 12 ~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq 84 (109)
+.|.++.++++++ |++++|+||||||||||+++|+|.+.+. .|.+.+++... . ....+.+++++|
T Consensus 76 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~----~----~~~~~~i~yv~Q 147 (659)
T PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP----T----KQILKRTGFVTQ 147 (659)
T ss_pred ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC----c----hhhccceEEECc
Confidence 3565666777776 7899999999999999999999998774 78877554311 0 011346899998
Q ss_pred cCC
Q psy16868 85 NTD 87 (109)
Q Consensus 85 ~~~ 87 (109)
++.
T Consensus 148 ~~~ 150 (659)
T PLN03211 148 DDI 150 (659)
T ss_pred ccc
Confidence 753
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.23 E-value=5.9e-12 Score=101.44 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=61.3
Q ss_pred EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+. .++++++ |+.++|+|++|||||||+++|.+++.+..|.+.+++.. .........+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~d----i~~i~l~~LR 1383 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGRE----IGAYGLRELR 1383 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----cccCCHHHHH
Confidence 4888998 778653 3677776 89999999999999999999999999999999865532 1222333456
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|++
T Consensus 1384 ~~I~iVpQdp 1393 (1560)
T PTZ00243 1384 RQFSMIPQDP 1393 (1560)
T ss_pred hcceEECCCC
Confidence 7899999997
No 365
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.23 E-value=3.5e-12 Score=84.73 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=33.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 46 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG 46 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 889999999999999999999999999999987544
No 366
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.23 E-value=5.7e-12 Score=82.94 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+++++|+||||||||||+++|+|++.|.+|.+.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 889999999999999999999999999999874
No 367
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.23 E-value=2.9e-11 Score=96.66 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=48.7
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~ 59 (109)
+|++|.+.||.+|.+.. + +|++++++|+|+||+||||+|+||++++.+..+.+.++
T Consensus 6 ki~~l~l~N~~~~~~~~-~-~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~ 61 (1486)
T PRK04863 6 KFRSLTLVNWNGFFART-F-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR 61 (1486)
T ss_pred eeeEEEEecccCccceE-E-EecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEEC
Confidence 47899999999998775 6 88888999999999999999999999998887766543
No 368
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.22 E-value=1.1e-11 Score=90.62 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=42.1
Q ss_pred EEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 6 VIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 6 i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++.|+ ..|... .++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus 22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G 85 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85 (549)
T ss_pred eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 445555 344442 3455555 899999999999999999999999999999887443
No 369
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.22 E-value=6.6e-12 Score=84.74 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=36.9
Q ss_pred eecCCC-eeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 12 KSYKEQ-TVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 12 ~~~~~~-~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
++|.+. .++++++ |++++|+||||||||||+++|+|++.|..|.+.
T Consensus 8 ~~y~~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 8 HRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred eeecCcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 455443 2344443 789999999999999999999999999999874
No 370
>KOG0056|consensus
Probab=99.21 E-value=8.7e-12 Score=90.14 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=61.9
Q ss_pred EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
+|+++|. ..|.+. .++.+++ |+.++|+||+|+||||+|+.|-...+.++|.+.+++++...+.. ...+.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~----~SLRs 612 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ----SSLRS 612 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH----HHHHH
Confidence 5788888 778764 4566766 88999999999999999999999999999999877764433322 23478
Q ss_pred EEEEEEecC
Q psy16868 78 YVEIVFDNT 86 (109)
Q Consensus 78 ~i~~~fq~~ 86 (109)
.|++|+|+.
T Consensus 613 ~IGVVPQDt 621 (790)
T KOG0056|consen 613 SIGVVPQDT 621 (790)
T ss_pred hcCcccCcc
Confidence 899999985
No 371
>KOG0055|consensus
Probab=99.20 E-value=8e-12 Score=97.32 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=60.3
Q ss_pred EEEEece-eecCCCe---eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKEQT---VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~---~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|. .+|..++ ++.+++ |+.++|+|||||||||++..|.++..|..|.+..++.+. .....+..
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di----~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDI----RNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccc----hhcchHHH
Confidence 5788888 6786653 344444 899999999999999999999999999999998655322 22233445
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|++|+|.|
T Consensus 426 r~~iglV~QeP 436 (1228)
T KOG0055|consen 426 RSQIGLVSQEP 436 (1228)
T ss_pred HhhcCeeeech
Confidence 67899999997
No 372
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.20 E-value=7.7e-12 Score=100.68 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=61.2
Q ss_pred EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+. .++++++ |+.++|+|++|||||||+.+|.+++.+..|.+.+++. ..........+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~----dI~~i~~~~LR 1359 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL----NIAKIGLHDLR 1359 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE----EccccCHHHHH
Confidence 4888998 778653 3566666 8999999999999999999999999999999986553 22222333457
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|+|
T Consensus 1360 ~~i~iVpQdp 1369 (1522)
T TIGR00957 1360 FKITIIPQDP 1369 (1522)
T ss_pred hcCeEECCCC
Confidence 7899999997
No 373
>KOG0058|consensus
Probab=99.19 E-value=1.4e-11 Score=91.70 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=60.7
Q ss_pred EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|. ..|..+ .++++++ |+.++||||||+||||+...|..++.|++|.+..++. ...+-+....
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~----~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV----PISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe----ehhhcCHHHH
Confidence 5788888 778665 3566665 8999999999999999999999999999999986553 2222233344
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
++.|++|-|.|
T Consensus 541 r~~Ig~V~QEP 551 (716)
T KOG0058|consen 541 RRKIGLVGQEP 551 (716)
T ss_pred HHHeeeeeccc
Confidence 67899998876
No 374
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.18 E-value=1.2e-11 Score=99.11 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=40.0
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+||+|||||||++.|.+++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4888998 77853 34566666 899999999999999999999999998
No 375
>PLN03073 ABC transporter F family; Provisional
Probab=99.18 E-value=2.5e-11 Score=91.88 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=43.4
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh---ccCccccc
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL---SDESTSLR 57 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l---~~~~~~~~ 57 (109)
..|+++|+ +.|.+..++++++ |+.++|+|+|||||||||++|+|.. .|..+.+.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~ 238 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL 238 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE
Confidence 35889999 8897777777776 8899999999999999999999853 24455543
No 376
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.17 E-value=8.3e-12 Score=91.31 Aligned_cols=59 Identities=5% Similarity=0.032 Sum_probs=42.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
|++++|+||||||||||+++|+|++.|..|.+.+.+.. +.........+..|++++|++
T Consensus 289 Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~---i~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK15439 289 GEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE---INALSTAQRLARGLVYLPEDR 347 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE---CCCCCHHHHHhCCcEECCCCh
Confidence 89999999999999999999999999999998754421 111000001134688888864
No 377
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.3e-11 Score=78.94 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=63.2
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccch---hhhhhhcCCC--Cc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS---RQALLHEGTG--PR 73 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~---~~~~~~~~~~--~~ 73 (109)
-++++++ +.|.......+++ +++.+|+|++||||||||.+|++-+.|+.|.+.+... ..++..-.+. ..
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 3677888 7787654343433 8999999999999999999999999999998764321 1111111111 12
Q ss_pred eeeEEEEEEEecCCCCCceeEEEe
Q psy16868 74 VVNAYVEIVFDNTDHRVPGFIRCR 97 (109)
Q Consensus 74 ~~~~~i~~~fq~~~~~~~~~~~~~ 97 (109)
..+...++|-|+|.+.+...+...
T Consensus 86 L~RTeWG~VhQnP~DGLRm~VSAG 109 (258)
T COG4107 86 LLRTEWGFVHQNPRDGLRMQVSAG 109 (258)
T ss_pred HhhhccceeecCccccceeeeccC
Confidence 224567999999977765555433
No 378
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.16 E-value=3.2e-11 Score=97.05 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=59.4
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ .+|.+ ..++++++ |+.++|+|++|||||||+.+|.+++. ..|.+.+++. ..........+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~----di~~i~~~~lR 1291 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV----SWNSVTLQTWR 1291 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE----EcccCCHHHHH
Confidence 5888998 77864 34677776 89999999999999999999999986 7898885553 11222333457
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
..|++++|+|
T Consensus 1292 ~~is~IpQdp 1301 (1490)
T TIGR01271 1292 KAFGVIPQKV 1301 (1490)
T ss_pred hceEEEeCCC
Confidence 7899999997
No 379
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.15 E-value=2.9e-11 Score=96.74 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=53.9
Q ss_pred EEEece-eecC----CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc---cCcccccccchhhhhhhcCCCC
Q psy16868 6 VIIHGF-KSYK----EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS---DESTSLRHSDSRQALLHEGTGP 72 (109)
Q Consensus 6 i~i~n~-~~~~----~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~---~~~~~~~~~~~~~~~~~~~~~~ 72 (109)
++++|+ ..+. ...++++++ |++++|+|||||||||||++|+|.+. +..|.+.+++... .
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~----~---- 831 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL----D---- 831 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC----C----
Confidence 567777 5553 345677776 78999999999999999999999987 4668877544311 1
Q ss_pred ceeeEEEEEEEecCC
Q psy16868 73 RVVNAYVEIVFDNTD 87 (109)
Q Consensus 73 ~~~~~~i~~~fq~~~ 87 (109)
...++.+++++|++.
T Consensus 832 ~~~~~~i~yv~Q~~~ 846 (1394)
T TIGR00956 832 SSFQRSIGYVQQQDL 846 (1394)
T ss_pred hhhhcceeeeccccc
Confidence 113567899999853
No 380
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=99.15 E-value=1.9e-11 Score=84.81 Aligned_cols=51 Identities=25% Similarity=0.525 Sum_probs=43.9
Q ss_pred CeeeEEEEeceeecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSDES 53 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~~~ 53 (109)
|++.+|.+.||+.|.+-. + .++ ++.+.|+||||+||||+|+||.-++.+-.
T Consensus 1 mrLrkiSl~nfr~f~~ld-i-tf~e~~ttIivgpNGsGKTtvLdair~aL~~fi 52 (440)
T COG3950 1 MRLRKISLNNFRCFLNLD-I-TFGESETTIIVGPNGSGKTTVLDAIRNALNKFI 52 (440)
T ss_pred Cccchhhhhhhhhhhhce-e-ecCCCceEEEECCCCCChhhHHHHHHHHHHhhc
Confidence 889999999999998766 4 555 56999999999999999999999887543
No 381
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.14 E-value=9.9e-11 Score=85.91 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=44.6
Q ss_pred EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.++++|+ +.|.+. .++.+++ ++.++|+||||+||||||+.|.+.+.+..|.+.
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~ 380 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence 4778888 788653 5566666 899999999999999999999999999888765
No 382
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.12 E-value=3.8e-12 Score=83.45 Aligned_cols=63 Identities=21% Similarity=0.177 Sum_probs=47.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCCCCCc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~~~~ 91 (109)
++++.|+|.||||||||+.+|+|-+.+++|.+..++.+. ...+...+...++-|||+|.....
T Consensus 32 g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dV----tk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 32 GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV----TKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred CceEEEEcCCCccHHHHHHHhhCccccCCceEEECceec----ccCCHHHHhhHHHHHhcchhhCCc
Confidence 899999999999999999999999999999998554321 222222234457778999866543
No 383
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2e-11 Score=88.51 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=48.5
Q ss_pred EEEEece-eecCCCe--eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 5 QVIIHGF-KSYKEQT--VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~--~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
.++++|. ..|.+.+ ++++|+ |+.++|+|++||||||+++.|++.+.+++|.+..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 4788888 6787654 677776 899999999999999999999999999999998655
No 384
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=99.11 E-value=2e-10 Score=84.59 Aligned_cols=50 Identities=32% Similarity=0.597 Sum_probs=46.1
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
|+|+++++.||+++.+.. + .++++.++|||+|-+||||+|+||..++.+.
T Consensus 1 M~L~~v~I~nFR~i~~ls-l-~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~ 50 (581)
T COG3593 1 MHLERVKIKNFRGINRLS-L-EFEEGLNVLIGENNSGKSSLLDALRLLLDPE 50 (581)
T ss_pred CcceeEEecccceeeeee-e-eecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence 899999999999998877 5 7877899999999999999999999999875
No 385
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.11 E-value=2.5e-11 Score=82.02 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|++++++|+|||||||+|++|.|++.|++|.+...+
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 899999999999999999999999999999988544
No 386
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.11 E-value=9.7e-11 Score=78.90 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=44.9
Q ss_pred EEEEece-eecCC---------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccch
Q psy16868 5 QVIIHGF-KSYKE---------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61 (109)
Q Consensus 5 ~i~i~n~-~~~~~---------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~ 61 (109)
-++++|+ +.|.. ..++++++ ++..+|+|+|||||||+-++|.+++.|+.|.+.+.+.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~ 75 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK 75 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCc
Confidence 3667776 44432 23455555 8999999999999999999999999999999987654
No 387
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.10 E-value=1.3e-10 Score=72.76 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=41.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCc---ccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES---TSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
|+++.|.||+|||||||+..+.|.+.+.. |.+..+++..+ ..+...+.|++.||++
T Consensus 28 GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~------~lPa~qRq~GiLFQD~ 86 (213)
T COG4136 28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD------MLPAAQRQIGILFQDA 86 (213)
T ss_pred CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc------ccchhhhheeeeeccc
Confidence 89999999999999999999999998764 44432332111 1233367899999986
No 388
>PF13175 AAA_15: AAA ATPase domain
Probab=99.10 E-value=1e-10 Score=82.83 Aligned_cols=48 Identities=31% Similarity=0.625 Sum_probs=40.5
Q ss_pred eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
|++++++|||+|++...+ +++.++++|+|.|||||||+|+||..+..+
T Consensus 1 ik~i~IkNfR~i~~~~~i-~~~~~itiiiG~N~sGKT~IL~aL~~~~~~ 48 (415)
T PF13175_consen 1 IKKIRIKNFRSIKDSGEI-NFDEDITIIIGENNSGKTNILEALDLFFNG 48 (415)
T ss_pred CcEEEEecccccCcccee-ecCCceEEEEccCCCCHHHHHHHHHHhcCc
Confidence 568999999999988326 887789999999999999999999555443
No 389
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.10 E-value=1.3e-10 Score=93.76 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=44.3
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.++++|. ..|.+ ..++++++ |+.++|+||||||||||+++|.|.+.+..|.+.
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~ 696 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE
Confidence 4788888 67753 33566665 899999999999999999999999999999876
No 390
>COG1106 Predicted ATPases [General function prediction only]
Probab=99.08 E-value=8.5e-11 Score=82.64 Aligned_cols=47 Identities=40% Similarity=0.683 Sum_probs=41.1
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
||.+++++||++|++.. +.++ +.+++|+|+||||||+|++||..+..
T Consensus 1 MI~~~~IkNFkSf~e~~-~~~~-~~in~I~G~N~sGKSNlleAl~f~~~ 47 (371)
T COG1106 1 MIKSFKIKNFKSFRELE-LEDF-GKINIIYGANGAGKSNLLEALYFLKG 47 (371)
T ss_pred CceEEEecccccHHHhh-hccc-cceEEEEcCCCCchhHHHHHHHHHHH
Confidence 47899999999999877 4455 69999999999999999999988764
No 391
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.07 E-value=4.1e-11 Score=83.37 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=39.1
Q ss_pred EEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 30 VVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 30 i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|+||||||||||+++|+|++.+..|.+.+.+... ... ....+.|+++||++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i----~~~--~~~~~~i~~v~q~~~ 52 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV----TNV--PPHLRHINMVFQSYA 52 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEEC----CCC--CHHHCCEEEEecCcc
Confidence 5899999999999999999999999988555311 111 112456999999863
No 392
>PRK13409 putative ATPase RIL; Provisional
Probab=99.07 E-value=1.1e-10 Score=86.91 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=38.1
Q ss_pred eecCCC-eeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 12 KSYKEQ-TVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 12 ~~~~~~-~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
..|+.. .++++++ |++++|+||||||||||+++|+|++.|..|.+.
T Consensus 81 ~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 81 HRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred EEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 356542 3466665 789999999999999999999999999999975
No 393
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.06 E-value=1.5e-11 Score=84.55 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
|++.+|.|-+|||||||+++|+.+..|+.|.+.+.+.+..-.....-..-++..++||||+.
T Consensus 54 GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 89999999999999999999999999999998866542211111111223367899999986
No 394
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.03 E-value=2.4e-10 Score=92.12 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=38.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
|++++|+|||||||||||++|.|.+.+..|.+.+.+ .|++++|++
T Consensus 452 G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-----------------~iayv~Q~~ 496 (1490)
T TIGR01271 452 GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----------------RISFSPQTS 496 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-----------------EEEEEeCCC
Confidence 899999999999999999999999999999876322 377888775
No 395
>KOG0055|consensus
Probab=99.02 E-value=1.8e-10 Score=89.93 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=61.7
Q ss_pred EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|. ..|..+ .++.+++ |+.++||||+||||||++..|...++|..|.+..++. ...+.+....
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~----dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV----DIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc----ccccCCHHHH
Confidence 5888888 778664 3555665 8999999999999999999999999999999985542 2234444556
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..+++|-|.|
T Consensus 1063 R~~i~lVsQEP 1073 (1228)
T KOG0055|consen 1063 RKQIGLVSQEP 1073 (1228)
T ss_pred HHhcceeccCc
Confidence 78899999987
No 396
>COG4637 Predicted ATPase [General function prediction only]
Probab=99.02 E-value=7.3e-11 Score=81.06 Aligned_cols=53 Identities=28% Similarity=0.630 Sum_probs=44.4
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
|++..|.++||+++++.. + ++ ..+++|+|.||+||||+++++..+-..-.|.+
T Consensus 1 ~~l~si~vknyRs~r~l~-l-ei-~~~nviIGANGaGKSn~~~~l~~l~~a~~g~l 53 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLD-L-EI-RRVNVIIGANGAGKSNFYDALRLLADAVRGNL 53 (373)
T ss_pred CccchhhhhcchhHHhcc-c-cc-cceEEEEcCCCCchhHHHHHHHHHHHHHhhhH
Confidence 889999999999998765 4 55 48999999999999999999988866555543
No 397
>KOG0054|consensus
Probab=99.01 E-value=2.1e-10 Score=90.87 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=62.6
Q ss_pred EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
+|+++|+ .+|++. .++++++ ++.++|+|+.|||||||+.||-.+..+..|+|..++ +....-.....+
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDg----vdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDG----VDISKIGLHDLR 1213 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcC----eecccccHHHHH
Confidence 5889999 778765 4566665 789999999999999999999999999999998544 333334444568
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
.++++++|+|
T Consensus 1214 srlsIIPQdP 1223 (1381)
T KOG0054|consen 1214 SRLSIIPQDP 1223 (1381)
T ss_pred hcCeeeCCCC
Confidence 8999999997
No 398
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.01 E-value=3.4e-10 Score=80.13 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=45.8
Q ss_pred eEEEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 4 KQVIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+.|+++|. ..|.+.. .+.+++ |+++.|+|.|||||||++..|.|+..|++|.+..++
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg 384 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence 46888888 5676542 122333 899999999999999999999999999999988655
No 399
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.99 E-value=2.1e-10 Score=82.88 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=55.5
Q ss_pred EEEEeceeecC---CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGFKSYK---EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~~~~~---~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.+.++++.... ++.++.+++ |+..+|+||+|||||||.++|.|...|..|.+++++- ++. ..+.....
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga--~l~--qWd~e~lG 409 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA--DLR--QWDREQLG 409 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch--hhh--cCCHHHhc
Confidence 35556553221 123345554 8999999999999999999999999999999996552 122 23333456
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
+.|+|.+|+-
T Consensus 410 ~hiGYLPQdV 419 (580)
T COG4618 410 RHIGYLPQDV 419 (580)
T ss_pred cccCcCcccc
Confidence 7899999975
No 400
>PLN03140 ABC transporter G family member; Provisional
Probab=98.99 E-value=2.5e-10 Score=91.75 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=46.4
Q ss_pred CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC---cccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 17 QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 17 ~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
..++++++ |++++|+|||||||||||++|+|.+.+. .|.+.+++... ... ..+..+++++|++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~----~~~---~~~~~i~yv~Q~d 248 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRL----NEF---VPRKTSAYISQND 248 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEec----hhh---cccceeEEecccc
Confidence 34566666 8899999999999999999999999887 78877544211 111 1145689999975
No 401
>PLN03130 ABC transporter C family member; Provisional
Probab=98.98 E-value=8.9e-10 Score=89.40 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=51.7
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCc-ccccccchhhhhhhcCCCCce
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (109)
.|+++|. ..|.+ ..++++++ |+.++|+||+|||||||+++|.|.+.+.. |.+.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~----------------- 676 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV----------------- 676 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-----------------
Confidence 4788887 67753 33566665 89999999999999999999999999988 7764
Q ss_pred eeEEEEEEEecC
Q psy16868 75 VNAYVEIVFDNT 86 (109)
Q Consensus 75 ~~~~i~~~fq~~ 86 (109)
.+..|+++.|++
T Consensus 677 l~~~Iayv~Q~p 688 (1622)
T PLN03130 677 IRGTVAYVPQVS 688 (1622)
T ss_pred EcCeEEEEcCcc
Confidence 134688888876
No 402
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.98 E-value=1.3e-10 Score=86.82 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=45.9
Q ss_pred CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC---cccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 17 QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 17 ~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
+.++++++ |++++|+|||||||||||++|+|...+. .|.+.+++.... ....++.+++++|++.
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-------~~~~~~~i~yv~Q~~~ 109 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-------AKEMRAISAYVQQDDL 109 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-------HHHHhhhceeeccccc
Confidence 34566666 8899999999999999999999988764 566664442111 1122456899999863
No 403
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.97 E-value=1.8e-10 Score=81.61 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=65.0
Q ss_pred EEEEece-eecC----CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcC
Q psy16868 5 QVIIHGF-KSYK----EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEG 69 (109)
Q Consensus 5 ~i~i~n~-~~~~----~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~ 69 (109)
-+.++|+ ..|. ...++++++ |+..+|+|++|||||-...+|.++++.. +|.+.+.+.. ++...
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~d--ll~~s 83 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGED--LLAAS 83 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChh--hhcCC
Confidence 5778887 5665 344555554 8999999999999999999999999742 3555555431 22111
Q ss_pred --CCCceeeEEEEEEEecCCCCCceeEEEeeccee
Q psy16868 70 --TGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVD 102 (109)
Q Consensus 70 --~~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~ 102 (109)
.-..-+..+|+|+||.|...+.+..++..+..+
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E 118 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHH
Confidence 112223467999999999888766655555444
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.97 E-value=4.8e-10 Score=70.91 Aligned_cols=52 Identities=29% Similarity=0.406 Sum_probs=38.7
Q ss_pred EEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 6 VIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 6 i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+.+.+|+.|.....+...++.+++|+||||+||||+++++.+++....+...
T Consensus 2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~ 53 (162)
T cd03227 2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATR 53 (162)
T ss_pred ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 5667787765544452233459999999999999999999999887665543
No 405
>PLN03140 ABC transporter G family member; Provisional
Probab=98.95 E-value=7.4e-10 Score=89.10 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=44.1
Q ss_pred eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc--CcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
.++++++ |++++|+|||||||||||++|+|...+ ..|.+.+++.. ......++.+++++|++.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~-------~~~~~~~~~igyv~Q~d~ 963 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP-------KKQETFARISGYCEQNDI 963 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc-------CChHHhhhheEEEccccc
Confidence 4677776 789999999999999999999998653 35665533311 011112356899999853
No 406
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.94 E-value=5.7e-10 Score=89.51 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred eeEecCC-----CCceEEEecCCCCcchHHHHHHHhh----ccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL----SDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
.++++++ |++++|+|||||||||||++|+|.+ .+..|.+.+++...... . ...+..+++++|++
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~----~-~~~r~~i~yv~Q~d 147 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI----K-KHYRGDVVYNAETD 147 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH----H-hhcCceeEEecccc
Confidence 4566666 8899999999999999999999987 35678887655321100 0 11245699999975
No 407
>PLN03232 ABC transporter C family member; Provisional
Probab=98.94 E-value=1.2e-09 Score=88.24 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=51.1
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.++++|. ..|.. ..++++++ |+.++|+||+|||||||+++|.|.+.+..|.+. ..
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------------~~ 677 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------------VI 677 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------------Ee
Confidence 4778887 67753 33566666 899999999999999999999999998877532 12
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|+++.|++
T Consensus 678 ~~~Iayv~Q~p 688 (1495)
T PLN03232 678 RGSVAYVPQVS 688 (1495)
T ss_pred cCcEEEEcCcc
Confidence 34688888876
No 408
>KOG0250|consensus
Probab=98.94 E-value=4.6e-09 Score=80.96 Aligned_cols=79 Identities=27% Similarity=0.465 Sum_probs=63.9
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
+|..|++.||.++.+.. + .|...++.|+|+||||||-+|-||+..+.........+....+++.++.. .+.|.+
T Consensus 41 ~I~sI~L~NFMCHsnL~-I-eFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~----~A~IsI 114 (1074)
T KOG0250|consen 41 KIESIHLTNFMCHSNLL-I-EFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCS----SAKISI 114 (1074)
T ss_pred eEEEEEEeeecccccce-e-ccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCc----ceEEEE
Confidence 46789999998888775 5 88888999999999999999999999998765544435556778888876 678888
Q ss_pred EEecC
Q psy16868 82 VFDNT 86 (109)
Q Consensus 82 ~fq~~ 86 (109)
+..+.
T Consensus 115 tL~N~ 119 (1074)
T KOG0250|consen 115 TLSNS 119 (1074)
T ss_pred EEecC
Confidence 88774
No 409
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.93 E-value=4.9e-10 Score=71.88 Aligned_cols=29 Identities=34% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+++++|+|||||||||||++|. +..|.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il----~~~G~v~ 49 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL----YASGKAR 49 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh----hcCCcEE
Confidence 7899999999999999999984 2456654
No 410
>PTZ00243 ABC transporter; Provisional
Probab=98.93 E-value=1e-09 Score=88.85 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 16 EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 16 ~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
+..++++++ |++++|+|||||||||||++|.|.+.+..|.+.. ...|++++|++.
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~-----------------~~~i~yv~Q~~~ 731 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA-----------------ERSIAYVPQQAW 731 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-----------------CCeEEEEeCCCc
Confidence 334455554 8999999999999999999999999999898651 135889998863
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.91 E-value=1.3e-09 Score=64.51 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.6
Q ss_pred CCceEEEecCCCCcchHHHHHH
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQ 46 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~ 46 (109)
++.++|+||||||||||++++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 6899999999999999999986
No 412
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.86 E-value=4.6e-09 Score=67.79 Aligned_cols=33 Identities=18% Similarity=0.432 Sum_probs=29.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
++.++|+|||||||||++++|++++.+..+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ 57 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIIT 57 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 788999999999999999999999988777665
No 413
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.82 E-value=3.3e-08 Score=72.64 Aligned_cols=71 Identities=28% Similarity=0.472 Sum_probs=55.9
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI 81 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (109)
|+..|+|+||--+.... + +|..++++|+|+.|+|||-+++||..++...... ++++.+.. ++.|..
T Consensus 1 ML~~LsIknfaiIe~L~-l-eF~~GltVlTGETGAGKSIiidAl~lllG~ra~~--------~~VR~G~~----~a~v~a 66 (557)
T COG0497 1 MLLELSIKNFAIIEELE-L-EFEKGLTVLTGETGAGKSIIIDALGLLLGGRADA--------SLVRHGAK----RAEVEA 66 (557)
T ss_pred CCcEEeeeheeeeeeee-e-eccCCceEEecCCCCcHhHHHHHHHHHhCCCCCc--------chhcCCCc----eeEEEE
Confidence 36789999998777766 5 8889999999999999999999999998765332 14555554 677777
Q ss_pred EEecC
Q psy16868 82 VFDNT 86 (109)
Q Consensus 82 ~fq~~ 86 (109)
+|..+
T Consensus 67 ~F~~~ 71 (557)
T COG0497 67 IFDLD 71 (557)
T ss_pred EecCC
Confidence 77665
No 414
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.77 E-value=5.2e-09 Score=68.33 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+++++|+||||||||||+++|++..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999998765
No 415
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.76 E-value=3.5e-08 Score=79.28 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=40.0
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHh-hccC
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFV-LSDE 52 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~-l~~~ 52 (109)
++.++-+.||..|.+.. + +|+++.++|+|+|||||||+|++|..+ +.+.
T Consensus 3 ~~~R~gliN~~~~~~~~-~-~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~ 52 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQE-F-WFRDGRLLLRGNNGAGKSKVLELLLPFLLDGK 52 (1353)
T ss_pred eeeeEEEEEeccccceE-E-ecCCCeEEEECCCCCcHHHHHHHHHHHHhcCC
Confidence 35678899998888765 6 898899999999999999999996644 4443
No 416
>KOG0059|consensus
Probab=98.75 E-value=4.1e-09 Score=81.63 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=56.0
Q ss_pred eEEEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 4 KQVIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
..+.+.|+ +.|.... +++.++ ++..++.|+|||||||++++|.|...++.|.+...+. -+..........
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~---~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGH---DITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecC---ccccccchhhhh
Confidence 45677777 5665543 333333 8999999999999999999999999999998774321 111111222246
Q ss_pred EEEEEEEecC
Q psy16868 77 AYVEIVFDNT 86 (109)
Q Consensus 77 ~~i~~~fq~~ 86 (109)
+.+++++|..
T Consensus 640 ~~iGyCPQ~d 649 (885)
T KOG0059|consen 640 KQLGYCPQFD 649 (885)
T ss_pred hhcccCCchh
Confidence 7799999984
No 417
>KOG0061|consensus
Probab=98.74 E-value=6.6e-09 Score=77.74 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=45.8
Q ss_pred CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc---CcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 17 QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD---ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 17 ~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
++++++++ |++++|.||+||||||||++|+|-..+ ..|.+..++. ....+..+..+++|.|++
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~-------~~~~~~~~~~s~yV~QdD 113 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR-------PRDSRSFRKISGYVQQDD 113 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc-------cCchhhhhheeEEEcccc
Confidence 45677776 789999999999999999999998874 3556553331 122233466789999875
No 418
>KOG0927|consensus
Probab=98.73 E-value=7.3e-09 Score=75.54 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
...+++||||||||||||+.+++.+.|..|.+.
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs 448 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhcccccccccc
Confidence 578999999999999999999999999999876
No 419
>KOG0962|consensus
Probab=98.73 E-value=9.6e-09 Score=80.68 Aligned_cols=89 Identities=21% Similarity=0.433 Sum_probs=58.9
Q ss_pred eeEEEEeceeecCCC--eeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC--CCceeeEE
Q psy16868 3 IKQVIIHGFKSYKEQ--TVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT--GPRVVNAY 78 (109)
Q Consensus 3 i~~i~i~n~~~~~~~--~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 78 (109)
|.++.|.+.++|++. +.+ .|..++++|+||||+||||++++|-.+..+....-. . ...++.+.. ......+.
T Consensus 4 i~klsI~GIRSf~~~d~~~i-~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpns-k--~~~FiHdpkIage~ev~Aq 79 (1294)
T KOG0962|consen 4 IDKLSIRGIRSFDDKDRNTI-EFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNS-K--GGSFIHDPKVAGETEVRAQ 79 (1294)
T ss_pred hHhhHhhcccccCCccccee-eecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCC-c--CCCCCCCccccchhhhhhe
Confidence 556788889888764 445 555799999999999999999999887753322110 0 012333322 12344688
Q ss_pred EEEEEecCCCCCceeEE
Q psy16868 79 VEIVFDNTDHRVPGFIR 95 (109)
Q Consensus 79 i~~~fq~~~~~~~~~~~ 95 (109)
|.+-|.+.++..-...+
T Consensus 80 vkL~f~~~~G~~~~~~R 96 (1294)
T KOG0962|consen 80 VKLAFTDVNGETMICTR 96 (1294)
T ss_pred eeeeeecCCCcEEEeeh
Confidence 99999988777644433
No 420
>KOG0062|consensus
Probab=98.73 E-value=6.7e-09 Score=75.34 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=35.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHH
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~ 47 (109)
.|.+.+| ..|+.+.++..-+ |...+|+|+||+||||||+||+-
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 5777888 7888776553333 78899999999999999999987
No 421
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.68 E-value=1e-08 Score=65.88 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=29.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|++.-++||||||||||+-+++|+++. +|.+.+.+
T Consensus 25 Ge~~HliGPNGaGKSTLLA~lAGm~~~-sGsi~~~G 59 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAG 59 (248)
T ss_pred ceEEEEECCCCccHHHHHHHHhCCCCC-CceEEECC
Confidence 788889999999999999999999765 46666554
No 422
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.65 E-value=1.9e-08 Score=65.07 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=26.1
Q ss_pred cCCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 22 PFDKRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 22 ~~~~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+|...++.|+|.||+||||||+||+-...
T Consensus 34 eF~apIT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred cccCceEEEEcCCCccHHHHHHHHHhhcc
Confidence 56689999999999999999999987765
No 423
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.3e-08 Score=72.59 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=54.7
Q ss_pred EEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
+.+.+. ..|.. +..+.+++ ++.++++|++|+||||+++.|...+++++|.+..++++...+. ....++.
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt----q~slR~a 338 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT----QQSLRRA 338 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH----HHHHHHH
Confidence 344444 34443 33444444 7899999999999999999999999999999886655332222 2234678
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|++++|+.
T Consensus 339 Ig~VPQDt 346 (497)
T COG5265 339 IGIVPQDT 346 (497)
T ss_pred hCcCcccc
Confidence 99999985
No 424
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=2.5e-08 Score=63.82 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=31.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH 58 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~ 58 (109)
|+.+++.||+|+||||||++|++-+.+..|.+..
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v 70 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV 70 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEE
Confidence 8999999999999999999999999999998763
No 425
>KOG2355|consensus
Probab=98.63 E-value=3.7e-08 Score=64.78 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=38.1
Q ss_pred EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.|+++|+ ..|... ..+.+|+ +....++|.|||||||||+.|+|----..+.+.
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~ 72 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQ 72 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEE
Confidence 5788888 667654 3344665 678889999999999999999885433334443
No 426
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.62 E-value=2.1e-08 Score=64.66 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|+||||||||||+++|+..+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 467899999999999999999888754
No 427
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.61 E-value=5.6e-08 Score=72.12 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=39.3
Q ss_pred EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.|+++|+ ....+. ..+.+.+ |+...|.|+||||||||++||+|+-+..+|.+.
T Consensus 392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~ 451 (604)
T COG4178 392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS 451 (604)
T ss_pred eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCcee
Confidence 4666776 333332 2233333 899999999999999999999999987778765
No 428
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.61 E-value=7.1e-09 Score=67.97 Aligned_cols=23 Identities=57% Similarity=0.868 Sum_probs=0.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
+++|+|+|||||||+|+||..++
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp -----------------------
T ss_pred CCccccccccccccccccccccc
Confidence 47899999999999999999885
No 429
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.58 E-value=3.5e-08 Score=64.36 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
++.++|+||||+||||+|++|++..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHH
Confidence 5799999999999999999999543
No 430
>KOG0927|consensus
Probab=98.57 E-value=6.6e-08 Score=70.68 Aligned_cols=52 Identities=27% Similarity=0.345 Sum_probs=38.9
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
-+++.|+ .+|....++.+.. ++.++|+|+|||||||+|++|++...|...++
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 3566666 5565554443332 88999999999999999999999988765543
No 431
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.57 E-value=1.9e-08 Score=72.91 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc-cccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~-~~~~~~ 60 (109)
|++++|+|||||||||||+ .++..+..| .+.+.+
T Consensus 32 GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg 66 (504)
T TIGR03238 32 SSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA 66 (504)
T ss_pred CCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence 8999999999999999999 567777777 466444
No 432
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.54 E-value=5.5e-08 Score=62.39 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+++++|+|+||||||||+++|++++.+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 678999999999999999999998865
No 433
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.52 E-value=5.3e-08 Score=66.36 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=31.2
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
..++|+||||||||||+++|++++.+..|.+.+.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g 146 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG 146 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC
Confidence 46799999999999999999999999999877554
No 434
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.51 E-value=5.4e-08 Score=63.72 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=24.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|+|+||||||||+++|++++.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 578999999999999999999998864
No 435
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.51 E-value=5e-08 Score=64.77 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=17.4
Q ss_pred CCceEEEecCCCCcchHH
Q psy16868 25 KRHNVVVGRNGSGKSNFF 42 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll 42 (109)
+++++|+|+||||||||+
T Consensus 21 Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 21 NKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 899999999999999996
No 436
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.49 E-value=8.1e-08 Score=63.85 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+.+++|.|+||||||||+++|+.++.+..+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 4689999999999999999999999877665
No 437
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.48 E-value=1.3e-07 Score=68.22 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=29.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+++++++||||-||||+++.|+|.+.|..|.
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 7899999999999999999999999998774
No 438
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.48 E-value=9.7e-08 Score=60.98 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|+||||||||||+++|+..+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 357899999999999999999998754
No 439
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=1.9e-07 Score=67.44 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=42.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccch----hhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS----RQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
|+.++|+|++|+|||||+.+|+++..+..+.+...+. ...+...... ...+..|.++||..+
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~-~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA-DNLKKAVAVVATSDE 230 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH-HhhCCeEEEEEcCCC
Confidence 8899999999999999999999998887776543221 1111111111 113467999999764
No 440
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.42 E-value=1.7e-07 Score=64.51 Aligned_cols=26 Identities=27% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+-+++|.|+|||||||++++|.+++.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999986
No 441
>KOG0060|consensus
Probab=98.40 E-value=3.4e-07 Score=67.54 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+....|+||||||||+|+++++++-+...|.+.
T Consensus 461 g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~ 493 (659)
T KOG0060|consen 461 GQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLT 493 (659)
T ss_pred CCeEEEECCCCCchhHHHHHHhcccccCCCeEE
Confidence 778889999999999999999999887888765
No 442
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.40 E-value=1.7e-07 Score=62.11 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.6
Q ss_pred ceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+++|.|+||||||||++.|..++..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999853
No 443
>KOG0065|consensus
Probab=98.40 E-value=8e-08 Score=76.00 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=43.6
Q ss_pred CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc--CcccccccchhhhhhhcCCCCceeeEEEEEEEecCCCC
Q psy16868 17 QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHR 89 (109)
Q Consensus 17 ~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~~ 89 (109)
+++|.+++ |-+|+|+|+|||||||||++|++=... -.|.+.++|. ........+.++++-|++.+.
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~-------p~~q~tF~R~~GYvqQ~DiH~ 876 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGF-------PKDQETFARVSGYVEQQDIHS 876 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCe-------eCchhhhccccceeecccccC
Confidence 45566666 569999999999999999999876421 1233332221 111133467789999987665
No 444
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.40 E-value=1.6e-07 Score=61.23 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.8
Q ss_pred CceEEEecCCCCcchHHHHHH
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQ 46 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~ 46 (109)
+.++|+||||+|||||+++|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 379999999999999999998
No 445
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.38 E-value=1.9e-07 Score=59.59 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|+||||||||||++.|+....
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 46789999999999999999998653
No 446
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.37 E-value=2.5e-07 Score=63.19 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+++|+|+||||||||+++|++++.+..+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~ 29 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVT 29 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceE
Confidence 47899999999999999999998765543
No 447
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.37 E-value=1.6e-07 Score=61.13 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=39.5
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
++..+.+-||..|-.+. + +++.-++.|.|.||+||||+|-|....+-|....+.
T Consensus 6 k~~SLtlVNwNG~fart-f-dLd~lvTtL~G~NGAGKsT~m~Af~taLIPD~~~l~ 59 (227)
T PF04310_consen 6 KFRSLTLVNWNGFFART-F-DLDELVTTLSGGNGAGKSTTMAAFITALIPDQTLLH 59 (227)
T ss_dssp EEEEEEEECETTECEEE-E-EHHCCCCCCCCSTTCCHHHHHHHHHHHHS--TTT--
T ss_pred ccceEEEEeecCeeeeE-e-ehhhheEeeecCCCCcchhhHHHHHHHhcccceEEe
Confidence 45678888885554444 4 666778999999999999999999888877655444
No 448
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.37 E-value=1.8e-07 Score=61.83 Aligned_cols=68 Identities=26% Similarity=0.288 Sum_probs=44.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC----cccccccchhhhhhh--cCCCCceeeEEEEEEEecCCCCCceeE
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE----STSLRHSDSRQALLH--EGTGPRVVNAYVEIVFDNTDHRVPGFI 94 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~fq~~~~~~~~~~ 94 (109)
|++-+++|++|||||-+.++|+++.... ..++++.+ .+++. ..+..+.....|.|+||+|..-+.++.
T Consensus 33 GEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~--idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~ 106 (330)
T COG4170 33 GEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD--IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSE 106 (330)
T ss_pred ceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccccc--chhhcCChHHhhhhhccchhhhhcCchhhcChHH
Confidence 8999999999999999999999998643 22333222 11111 111122334568999999876555443
No 449
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.36 E-value=2.6e-07 Score=59.95 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=21.6
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
+++|+|++|||||||.++|..++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 450
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.33 E-value=3.4e-07 Score=59.59 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=23.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|+||+|||||||+++|+..+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 67899999999999999999999874
No 451
>KOG0054|consensus
Probab=98.33 E-value=9e-07 Score=70.91 Aligned_cols=53 Identities=26% Similarity=0.276 Sum_probs=41.1
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.++++|. .++.+ ...+++++ |++++|+|+-||||||||.||.|-+...+|.+.
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~ 579 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA 579 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE
Confidence 4566665 45543 11355555 899999999999999999999999998888866
No 452
>KOG0066|consensus
Probab=98.30 E-value=4.5e-07 Score=65.63 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
...++|+||||.||||||..|.|-+.|..|..+
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~R 645 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR 645 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhh
Confidence 467999999999999999999999999988765
No 453
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.27 E-value=6e-07 Score=58.89 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+++++|+||||+||||++++|+++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998664
No 454
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.25 E-value=5.9e-07 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|.|++|||||||.++|...+.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999883
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.25 E-value=7.3e-07 Score=53.39 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=25.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES 53 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~ 53 (109)
+..+.|+||+|+||||++++|+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 35788999999999999999999887653
No 456
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.24 E-value=6.7e-07 Score=62.00 Aligned_cols=33 Identities=18% Similarity=0.451 Sum_probs=28.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+..++|+|++|||||||+++|.+.+++..+.+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ 176 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIIT 176 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEE
Confidence 678999999999999999999999887666544
No 457
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1.3e-06 Score=59.82 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=38.0
Q ss_pred eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+|.+++++||+.|.+.. + .+ ..+++++|||.+||||.+.+|...+.
T Consensus 1 mi~sl~l~nfk~y~n~~-i-~l-~~ltVF~G~NssGKSt~iqsl~li~s 46 (374)
T COG4938 1 MILSLSLKNFKPYINGK-I-IL-KPLTVFIGPNSSGKSTTIQSLYLIYS 46 (374)
T ss_pred CcceeeecCccceecce-E-EE-ecceEEEcCCCCchhHHHHHHHHHHH
Confidence 36789999999996654 3 44 48899999999999999999987765
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.23 E-value=9e-07 Score=57.71 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
++++|+||+||||||++.+|...+.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578999999999999999988877643
No 459
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.22 E-value=7.7e-07 Score=58.71 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred CceEEEecCCCCcchHHHHHHH
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~ 47 (109)
...+|+||||+||||+|++|..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999984
No 460
>KOG0064|consensus
Probab=98.22 E-value=7.1e-07 Score=65.59 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
|-...|+||||||||+|++.|.|+-+-..|.+
T Consensus 508 G~hLLItGPNGCGKSSLfRILggLWPvy~g~L 539 (728)
T KOG0064|consen 508 GMHLLITGPNGCGKSSLFRILGGLWPVYNGLL 539 (728)
T ss_pred CceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence 55677889999999999999999877655543
No 461
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.22 E-value=7.7e-07 Score=56.35 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+..++|+|++|+|||||+++|.+-..-..+.++
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 689999999999999999999887655555544
No 462
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.22 E-value=8e-07 Score=61.93 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+.+++|+||||+||||++..|++.+.+..+.+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~ 146 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL 146 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 678999999999999999999999886655555
No 463
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.22 E-value=8.3e-07 Score=58.68 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=22.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
.++++|+||||+||||+|++|+++.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH
Confidence 4789999999999999999998654
No 464
>PLN02796 D-glycerate 3-kinase
Probab=98.20 E-value=9.3e-07 Score=62.05 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.6
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
+++|+|++|||||||+++|.+++.+.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 48999999999999999999999753
No 465
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.18 E-value=1.1e-06 Score=62.15 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++++|+||+||||||++.+|...+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 58899999999999999999998874
No 466
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=1.7e-06 Score=66.07 Aligned_cols=48 Identities=31% Similarity=0.542 Sum_probs=42.0
Q ss_pred CeeeEEEEeceeecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
|+|.+|+|-+|..|.+.+ + +|. .++.+|.|+|-+|||||+-.|.-+++
T Consensus 1 MrI~sl~I~gYGKFs~r~-~-df~~s~f~vI~G~NEAGKSTl~sFI~smlF 49 (984)
T COG4717 1 MRIQSLEIVGYGKFSERH-F-DFGESKFQVIYGENEAGKSTLFSFIHSMLF 49 (984)
T ss_pred CceeEEEeeeccchhhhh-h-hccCCceEEEecCccccHHHHHHHHHHHHc
Confidence 899999999998888877 6 555 45999999999999999999888776
No 467
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.17 E-value=1.3e-06 Score=53.79 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
+++|+||+|||||||++.|+..+.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 46899999999999999999876543
No 468
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.16 E-value=7.2e-07 Score=57.09 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=19.7
Q ss_pred CceEEEecCCCCcchHHHHHH
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQ 46 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~ 46 (109)
.+++|+|++||||||+++.|+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999998
No 469
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.15 E-value=1.3e-06 Score=60.04 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+..++++|+||+|||||+++|.+......|.+.
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~ 193 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEIS 193 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhcccccee
Confidence 678999999999999999999999887777664
No 470
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.15 E-value=1.4e-06 Score=54.93 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=21.0
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
-.++|+|++|+|||||+++|.+.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 35899999999999999999986
No 471
>PRK00098 GTPase RsgA; Reviewed
Probab=98.15 E-value=1.3e-06 Score=60.33 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=29.7
Q ss_pred CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 24 DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 24 ~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.+..++|+|+||+|||||+++|.+......|.+.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~ 196 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEIS 196 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCccee
Confidence 3778999999999999999999988877777765
No 472
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.15 E-value=1.5e-06 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
+++|.|++||||||+.+.|+--+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998765
No 473
>PRK08149 ATP synthase SpaL; Validated
Probab=98.14 E-value=2.3e-06 Score=61.70 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=25.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES 53 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~ 53 (109)
|+.++|+|+||+|||||+++|++...+..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv 179 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEADV 179 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence 89999999999999999999998776553
No 474
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.13 E-value=2.7e-06 Score=61.60 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=41.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhh----hhhhcCCCCceeeEEEEEEEec
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQ----ALLHEGTGPRVVNAYVEIVFDN 85 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~fq~ 85 (109)
++.++|+|+||+|||||+++|++...+..+.+...+... ++.............|.++.+.
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 789999999999999999999999988877665433211 1222212222235567777644
No 475
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.12 E-value=3.3e-06 Score=61.21 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=41.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCc---ccccccch-hhhhhhcCCCCceeeEEEEEEEecCCCCCc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES---TSLRHSDS-RQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~fq~~~~~~~ 91 (109)
++.++|+|+||+|||||+++|++...+.. +.+-..+. ..+++.... ........++|++..++-+
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~--~~~~~~~tvVv~~~ad~~~ 243 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENIL--GAEGRARSVVIAAPADVSP 243 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhc--CcCCCceEEEEEECCCCCH
Confidence 78999999999999999999999887663 33322221 111111111 1223567888888766543
No 476
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.11 E-value=1.8e-06 Score=56.11 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=22.8
Q ss_pred eEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
++|+|++|+|||||+++|.+...+..+
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~ 30 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEG 30 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 689999999999999999987654433
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=98.11 E-value=3e-06 Score=59.92 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH 58 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~ 58 (109)
++.++|+|+||+|||||+++|.+...+..|.+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~ 228 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVRE 228 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEE
Confidence 5789999999999999999999999988888763
No 478
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.11 E-value=1.5e-06 Score=53.37 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=19.5
Q ss_pred eEEEecCCCCcchHHHHHHHh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~ 48 (109)
++|+|++|+|||||+++|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 589999999999999999886
No 479
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=2.1e-06 Score=61.86 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=22.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+++++|+||||+||||++..|++.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999999875
No 480
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.09 E-value=2.6e-06 Score=55.69 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
.++|+|++|||||||++.+...+.+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~ 28 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQK 28 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 57899999999999999999887654
No 481
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.09 E-value=2.3e-06 Score=56.90 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=25.4
Q ss_pred CCceEEEecCCCCcchHHHHHHH-hhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQF-VLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~-~l~~~~~~ 55 (109)
+++++|+||||+||||++++|++ .+.+..|.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~ 62 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGS 62 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999999 33344443
No 482
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.08 E-value=2.6e-06 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.2
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
+.+|+||||+||||+++.++..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999843
No 483
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.06 E-value=2e-06 Score=63.24 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=29.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
++.++|+|+||+|||||++.|.+++++..+...
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~ 242 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEA 242 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEE
Confidence 678999999999999999999999998776543
No 484
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.06 E-value=2.4e-06 Score=62.44 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=24.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
+.+++|+||||+||||++..|++.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh
Confidence 6799999999999999999999877543
No 485
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.05 E-value=2.7e-06 Score=61.19 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
-+++|.|++|||||||+++|.+++.+.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~ 239 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVT 239 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 467899999999999999999988654
No 486
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.04 E-value=3.3e-06 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCCceEEEecCCCCcchHHHHHHHhh
Q psy16868 24 DKRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 24 ~~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+-..++++|++|+||||++++|++..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 34578999999999999999999973
No 487
>KOG0066|consensus
Probab=98.04 E-value=4.1e-06 Score=60.82 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=32.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHH
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~ 47 (109)
.|++.|| .+-....++.+-+ |...+|+||||-||||||+.|+.
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~ 312 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAA 312 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHh
Confidence 4778888 5554444333333 78899999999999999999864
No 488
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.04 E-value=3e-06 Score=55.58 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+.+++|+||+|||||||+++|.-.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 678899999999999999999643
No 489
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.04 E-value=4.4e-06 Score=56.77 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.4
Q ss_pred CCceEEEecCCCCcchHHHHH
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAI 45 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al 45 (109)
+.+++|+|.+|||||||++.+
T Consensus 21 g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred CcEEEEECCCCCchHHHHHHH
Confidence 799999999999999999755
No 490
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.02 E-value=2.9e-06 Score=52.56 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=18.1
Q ss_pred eEEEecCCCCcchHHHHHH
Q psy16868 28 NVVVGRNGSGKSNFFFAIQ 46 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~ 46 (109)
++|+|++|+|||||++.|.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 5899999999999999998
No 491
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.02 E-value=3.3e-06 Score=54.12 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
.+++|+|++|||||||++.|...+.+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhh
Confidence 57899999999999999999988875
No 492
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.01 E-value=3.7e-06 Score=54.73 Aligned_cols=27 Identities=30% Similarity=0.226 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|+|++|||||||.++|...+.+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 678999999999999999999998754
No 493
>PRK07261 topology modulation protein; Provisional
Probab=98.01 E-value=4.4e-06 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.7
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|++|||||||.+.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 368999999999999999986653
No 494
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.01 E-value=4.5e-06 Score=51.66 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=24.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
+++|.|++|+||||++..++.......+.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v 30 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV 30 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 468999999999999999988876544433
No 495
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.01 E-value=5.6e-06 Score=60.06 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
|.+++|+|+||.||||.++.|+|-+.|..|...
T Consensus 100 G~V~GilG~NGiGKsTalkILaGel~PNLG~~~ 132 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYE 132 (591)
T ss_pred CcEEEEEcCCCccHHHHHHHHhCccccCCCCCC
Confidence 789999999999999999999999999888654
No 496
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.01 E-value=3.8e-06 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.2
Q ss_pred eEEEecCCCCcchHHHHHHHh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~ 48 (109)
++|+|+.|+|||||+++|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999963
No 497
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.99 E-value=1.3e-05 Score=53.42 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCcchH-HHHHHHhhccC
Q psy16868 25 KRHNVVVGRNGSGKSNF-FFAIQFVLSDE 52 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStl-l~al~~~l~~~ 52 (109)
+.+++|+|+|||||||| ++.+++++.+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g 52 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG 52 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 68999999999999999 68888776543
No 498
>PRK07429 phosphoribulokinase; Provisional
Probab=97.99 E-value=4.4e-06 Score=58.49 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDES 53 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~~ 53 (109)
+++|.|++||||||+++.|+.++.+..
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 688999999999999999999987654
No 499
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.99 E-value=3.9e-06 Score=62.70 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
-+++|.||||||||||+++|.+.+. ..+.+.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp-~vgvIs 96 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP-SIAVIS 96 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC-CcEEEE
Confidence 3788999999999999999999873 344444
No 500
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.99 E-value=5e-06 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
++.++|++||||||+.+.|...+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 467899999999999999986554
Done!