Query psy16868
Match_columns 109
No_of_seqs 186 out of 1541
Neff 9.5
Searched_HMMs 29240
Date Sat Aug 17 00:08:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kta_A Chromosome segregation 99.8 2.1E-19 7.3E-24 113.8 10.2 89 1-91 2-94 (182)
2 1f2t_A RAD50 ABC-ATPase; DNA d 99.8 2.5E-18 8.6E-23 106.6 7.2 89 1-97 1-89 (149)
3 1e69_A Chromosome segregation 99.7 1.8E-17 6.2E-22 113.7 10.0 94 1-95 1-96 (322)
4 3qks_A DNA double-strand break 99.7 1.4E-17 4.8E-22 107.8 8.0 89 1-97 1-89 (203)
5 3fvq_A Fe(3+) IONS import ATP- 99.7 3.6E-18 1.2E-22 118.8 3.3 80 5-86 4-89 (359)
6 3qkt_A DNA double-strand break 99.7 3E-17 1E-21 113.3 6.8 88 1-96 1-88 (339)
7 3rlf_A Maltose/maltodextrin im 99.7 1.2E-17 4.1E-22 116.9 4.2 77 5-87 3-85 (381)
8 2olj_A Amino acid ABC transpor 99.7 5.8E-18 2E-22 113.6 1.9 80 6-87 25-110 (263)
9 1v43_A Sugar-binding transport 99.7 1.7E-17 5.8E-22 115.9 3.9 76 5-86 11-92 (372)
10 3gfo_A Cobalt import ATP-bindi 99.7 3.2E-18 1.1E-22 115.5 0.2 83 5-89 7-96 (275)
11 1g6h_A High-affinity branched- 99.7 5E-18 1.7E-22 113.4 0.9 79 5-86 7-91 (257)
12 4g1u_C Hemin import ATP-bindin 99.7 1.7E-17 5.8E-22 111.4 2.8 82 5-90 11-98 (266)
13 2pcj_A ABC transporter, lipopr 99.7 3.8E-18 1.3E-22 112.0 -0.4 79 5-87 4-92 (224)
14 1sgw_A Putative ABC transporte 99.7 3E-17 1E-21 107.2 3.7 74 4-87 9-88 (214)
15 1g29_1 MALK, maltose transport 99.7 3.3E-17 1.1E-21 114.5 4.0 83 5-87 3-91 (372)
16 1ji0_A ABC transporter; ATP bi 99.7 1.2E-17 4.2E-22 110.5 1.7 80 5-87 6-91 (240)
17 3tif_A Uncharacterized ABC tra 99.7 3.3E-18 1.1E-22 113.0 -1.2 78 6-87 2-93 (235)
18 3auy_A DNA double-strand break 99.7 1E-16 3.4E-21 111.8 6.2 84 1-94 3-86 (371)
19 2yyz_A Sugar ABC transporter, 99.7 5.2E-17 1.8E-21 113.0 4.0 76 6-87 4-85 (359)
20 2it1_A 362AA long hypothetical 99.6 6.3E-17 2.2E-21 112.7 4.2 76 6-87 4-85 (362)
21 1vpl_A ABC transporter, ATP-bi 99.6 2.5E-17 8.6E-22 110.1 1.8 78 5-87 15-98 (256)
22 1w1w_A Structural maintenance 99.6 6.4E-16 2.2E-20 109.5 9.0 93 1-95 2-110 (430)
23 1z47_A CYSA, putative ABC-tran 99.6 6.2E-17 2.1E-21 112.5 3.5 77 5-87 14-97 (355)
24 1oxx_K GLCV, glucose, ABC tran 99.6 3E-17 1E-21 114.1 1.6 81 6-87 4-92 (353)
25 2ff7_A Alpha-hemolysin translo 99.6 4.6E-17 1.6E-21 108.2 2.4 79 5-87 7-93 (247)
26 1b0u_A Histidine permease; ABC 99.6 1.4E-17 4.9E-22 111.5 -0.3 55 6-60 7-67 (262)
27 1mv5_A LMRA, multidrug resista 99.6 4.5E-17 1.5E-21 108.0 1.9 78 6-87 2-86 (243)
28 2ihy_A ABC transporter, ATP-bi 99.6 3.2E-17 1.1E-21 110.7 0.5 81 5-87 21-107 (279)
29 3tui_C Methionine import ATP-b 99.6 3.7E-17 1.3E-21 113.9 0.2 81 6-87 25-115 (366)
30 2ixe_A Antigen peptide transpo 99.6 6.1E-17 2.1E-21 108.9 1.2 78 6-87 17-103 (271)
31 3d31_A Sulfate/molybdate ABC t 99.6 9.5E-17 3.3E-21 111.3 1.8 75 6-87 2-82 (348)
32 2cbz_A Multidrug resistance-as 99.6 2.3E-16 8E-21 104.3 3.1 65 6-87 4-76 (237)
33 2nq2_C Hypothetical ABC transp 99.6 5E-16 1.7E-20 103.6 4.8 67 5-88 4-77 (253)
34 2pze_A Cystic fibrosis transme 99.6 3.9E-16 1.3E-20 102.7 4.1 67 4-87 5-79 (229)
35 2yz2_A Putative ABC transporte 99.6 1.8E-16 6E-21 106.4 2.1 74 6-86 3-87 (266)
36 2zu0_C Probable ATP-dependent 99.6 1.6E-16 5.3E-21 106.7 1.5 79 6-87 21-107 (267)
37 2d2e_A SUFC protein; ABC-ATPas 99.6 5.5E-17 1.9E-21 108.0 -0.7 78 6-87 4-90 (250)
38 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 2.7E-15 9.1E-20 104.6 7.6 88 1-95 1-88 (365)
39 3nh6_A ATP-binding cassette SU 99.6 1.3E-16 4.4E-21 109.0 0.7 79 5-87 53-138 (306)
40 2o5v_A DNA replication and rep 99.6 5.2E-15 1.8E-19 103.0 8.3 85 1-95 4-88 (359)
41 3gd7_A Fusion complex of cysti 99.6 2.8E-16 9.7E-21 110.4 1.6 78 5-87 19-104 (390)
42 4ad8_A DNA repair protein RECN 99.6 2.4E-15 8.3E-20 108.7 5.7 83 1-97 38-122 (517)
43 2ghi_A Transport protein; mult 99.6 5.7E-16 1.9E-20 103.7 1.1 77 6-87 18-103 (260)
44 2onk_A Molybdate/tungstate ABC 99.5 1.7E-15 5.9E-20 100.3 1.5 74 6-87 2-80 (240)
45 1qhl_A Protein (cell division 99.5 4.3E-16 1.5E-20 102.5 -1.9 58 1-60 5-62 (227)
46 2pjz_A Hypothetical protein ST 99.5 2.5E-15 8.5E-20 100.7 1.3 75 6-88 2-86 (263)
47 2qi9_C Vitamin B12 import ATP- 99.5 1.6E-15 5.6E-20 100.9 0.3 74 6-87 5-83 (249)
48 3b5x_A Lipid A export ATP-bind 99.5 7.8E-15 2.7E-19 107.4 3.6 79 5-87 341-427 (582)
49 4aby_A DNA repair protein RECN 99.5 2.8E-14 9.5E-19 100.3 4.9 69 1-83 38-106 (415)
50 2bbs_A Cystic fibrosis transme 99.5 9.7E-15 3.3E-19 99.1 1.9 64 6-87 41-109 (290)
51 3b60_A Lipid A export ATP-bind 99.5 8.6E-15 2.9E-19 107.2 1.7 79 5-87 341-427 (582)
52 2yl4_A ATP-binding cassette SU 99.5 1.4E-14 4.6E-19 106.4 2.6 78 6-87 342-428 (595)
53 3qf4_B Uncharacterized ABC tra 99.4 1.1E-14 3.6E-19 107.0 0.7 79 5-87 354-439 (598)
54 4a82_A Cystic fibrosis transme 99.4 9.1E-15 3.1E-19 107.0 -0.3 79 5-87 339-425 (578)
55 3qf4_A ABC transporter, ATP-bi 99.4 1.1E-14 3.8E-19 106.7 0.1 79 5-87 341-427 (587)
56 3b85_A Phosphate starvation-in 99.4 4.4E-15 1.5E-19 96.5 -5.0 66 13-86 9-75 (208)
57 3bk7_A ABC transporter ATP-bin 99.4 1.1E-12 3.8E-17 96.6 6.4 67 5-89 357-429 (607)
58 1yqt_A RNAse L inhibitor; ATP- 99.3 1.4E-12 4.9E-17 94.8 6.1 66 5-88 287-358 (538)
59 4f4c_A Multidrug resistance pr 99.3 5.4E-13 1.8E-17 105.0 2.2 78 5-86 1076-1162(1321)
60 3g5u_A MCG1178, multidrug resi 99.3 3.7E-13 1.3E-17 105.7 0.7 79 5-87 387-474 (1284)
61 3g5u_A MCG1178, multidrug resi 99.3 6.3E-13 2.1E-17 104.4 1.5 78 5-86 1030-1116(1284)
62 1htw_A HI0065; nucleotide-bind 99.3 3.3E-13 1.1E-17 84.3 -0.8 35 25-60 33-67 (158)
63 3euj_A Chromosome partition pr 99.2 7.2E-12 2.5E-16 90.1 4.7 56 4-61 10-65 (483)
64 4f4c_A Multidrug resistance pr 99.2 2.1E-12 7E-17 101.8 1.5 78 5-86 415-501 (1321)
65 3sop_A Neuronal-specific septi 99.2 8.3E-12 2.8E-16 83.9 4.0 54 27-87 4-57 (270)
66 3ozx_A RNAse L inhibitor; ATP 99.2 1.7E-11 5.8E-16 89.2 4.3 52 5-57 269-326 (538)
67 1yqt_A RNAse L inhibitor; ATP- 99.2 2.1E-11 7.3E-16 88.7 4.6 48 9-56 25-78 (538)
68 3bk7_A ABC transporter ATP-bin 99.2 1.8E-11 6E-16 90.2 4.1 48 9-56 95-148 (607)
69 2iw3_A Elongation factor 3A; a 99.1 6.8E-12 2.3E-16 96.2 1.3 54 6-59 672-733 (986)
70 1z6g_A Guanylate kinase; struc 99.1 8.1E-12 2.8E-16 81.3 0.7 31 25-58 23-53 (218)
71 2i3b_A HCR-ntpase, human cance 99.1 3.9E-11 1.3E-15 76.8 2.6 56 25-88 1-56 (189)
72 3j16_B RLI1P; ribosome recycli 99.1 1.6E-10 5.5E-15 85.1 5.8 32 25-56 103-134 (608)
73 1s96_A Guanylate kinase, GMP k 99.0 2.7E-11 9.3E-16 79.1 0.6 33 25-57 16-50 (219)
74 3ozx_A RNAse L inhibitor; ATP 99.0 6.4E-11 2.2E-15 86.2 1.8 32 25-56 25-56 (538)
75 1znw_A Guanylate kinase, GMP k 99.0 1.3E-10 4.6E-15 74.7 2.7 26 25-50 20-45 (207)
76 2dpy_A FLII, flagellum-specifi 99.0 1.4E-10 4.8E-15 82.6 2.8 62 25-86 157-222 (438)
77 3aez_A Pantothenate kinase; tr 99.0 2.2E-10 7.6E-15 78.4 3.2 30 25-54 90-119 (312)
78 1u0l_A Probable GTPase ENGC; p 99.0 1.1E-10 3.6E-15 79.4 1.4 59 25-87 169-230 (301)
79 2gza_A Type IV secretion syste 99.0 3.3E-10 1.1E-14 78.8 3.9 56 25-86 175-231 (361)
80 3a00_A Guanylate kinase, GMP k 98.9 4.3E-10 1.5E-14 71.2 3.2 26 25-50 1-26 (186)
81 2eyu_A Twitching motility prot 98.9 2.1E-10 7.1E-15 76.7 1.7 36 25-60 25-61 (261)
82 3szr_A Interferon-induced GTP- 98.9 1.6E-10 5.6E-15 85.1 1.1 62 25-87 45-107 (608)
83 2iw3_A Elongation factor 3A; a 98.9 7.8E-10 2.7E-14 85.0 4.5 43 5-47 435-483 (986)
84 2yv5_A YJEQ protein; hydrolase 98.9 4.1E-10 1.4E-14 76.6 2.4 62 25-89 165-227 (302)
85 4gp7_A Metallophosphoesterase; 98.9 6.9E-10 2.3E-14 69.6 3.1 33 25-57 9-53 (171)
86 1p9r_A General secretion pathw 98.9 1E-10 3.4E-15 82.9 -1.0 35 25-59 167-201 (418)
87 2qm8_A GTPase/ATPase; G protei 98.9 1.2E-10 4.3E-15 80.3 -0.8 36 25-60 55-90 (337)
88 2pt7_A CAG-ALFA; ATPase, prote 98.9 5.3E-10 1.8E-14 77.0 2.3 36 25-60 171-206 (330)
89 2npi_A Protein CLP1; CLP1-PCF1 98.9 4.4E-10 1.5E-14 80.5 1.9 35 25-59 138-174 (460)
90 1rj9_A FTSY, signal recognitio 98.9 7.9E-10 2.7E-14 75.4 3.0 36 25-60 102-137 (304)
91 3tr0_A Guanylate kinase, GMP k 98.9 7.5E-10 2.6E-14 70.6 2.7 26 25-50 7-32 (205)
92 3b9q_A Chloroplast SRP recepto 98.9 6E-10 2E-14 75.9 2.3 36 25-60 100-135 (302)
93 1lvg_A Guanylate kinase, GMP k 98.9 1.1E-09 3.8E-14 70.1 3.3 26 25-50 4-29 (198)
94 3c8u_A Fructokinase; YP_612366 98.9 8.2E-10 2.8E-14 71.1 2.6 33 25-57 22-57 (208)
95 3j16_B RLI1P; ribosome recycli 98.9 8.5E-10 2.9E-14 81.3 2.6 31 25-55 378-408 (608)
96 2qag_B Septin-6, protein NEDD5 98.9 9E-10 3.1E-14 78.2 2.6 43 6-49 17-66 (427)
97 1tq4_A IIGP1, interferon-induc 98.8 1.2E-09 4.1E-14 77.3 2.9 33 27-59 71-103 (413)
98 1ye8_A Protein THEP1, hypothet 98.8 1.2E-09 4.1E-14 69.2 2.5 24 27-50 2-25 (178)
99 3lnc_A Guanylate kinase, GMP k 98.8 1.9E-09 6.4E-14 70.3 3.0 25 25-49 27-52 (231)
100 2ehv_A Hypothetical protein PH 98.8 1.6E-09 5.4E-14 70.8 2.6 31 25-55 30-62 (251)
101 2jeo_A Uridine-cytidine kinase 98.8 1.4E-09 4.9E-14 71.6 2.3 25 25-49 25-49 (245)
102 1sq5_A Pantothenate kinase; P- 98.8 2.1E-09 7.1E-14 73.2 3.2 34 25-58 80-115 (308)
103 2v9p_A Replication protein E1; 98.8 2E-09 6.9E-14 73.5 2.9 30 25-57 126-155 (305)
104 2og2_A Putative signal recogni 98.8 1.5E-09 5.2E-14 75.5 2.3 36 25-60 157-192 (359)
105 4a74_A DNA repair and recombin 98.8 2.3E-09 7.8E-14 69.3 2.9 27 25-51 25-51 (231)
106 3e70_C DPA, signal recognition 98.8 1.7E-09 5.8E-14 74.5 2.3 36 25-60 129-164 (328)
107 3asz_A Uridine kinase; cytidin 98.8 2.2E-09 7.6E-14 68.8 2.6 27 25-51 6-32 (211)
108 1t9h_A YLOQ, probable GTPase E 98.8 4.9E-10 1.7E-14 76.5 -0.5 34 25-58 173-206 (307)
109 1kgd_A CASK, peripheral plasma 98.8 2.9E-09 1E-13 67.1 3.0 28 23-50 3-30 (180)
110 1zp6_A Hypothetical protein AT 98.8 2.2E-09 7.6E-14 67.7 2.3 24 25-48 9-32 (191)
111 2rcn_A Probable GTPase ENGC; Y 98.8 2.2E-09 7.5E-14 74.7 2.4 33 25-57 215-248 (358)
112 2obl_A ESCN; ATPase, hydrolase 98.8 3.2E-09 1.1E-13 73.6 2.7 36 25-60 71-106 (347)
113 2qnr_A Septin-2, protein NEDD5 98.7 4.9E-09 1.7E-13 71.3 3.1 42 12-54 6-48 (301)
114 2yhs_A FTSY, cell division pro 98.7 3.4E-09 1.2E-13 76.5 2.3 35 25-59 293-327 (503)
115 1lw7_A Transcriptional regulat 98.7 2.6E-09 8.8E-14 74.2 1.5 33 25-57 170-206 (365)
116 2bbw_A Adenylate kinase 4, AK4 98.7 2.5E-09 8.5E-14 70.4 0.9 33 25-57 27-62 (246)
117 2oap_1 GSPE-2, type II secreti 98.7 6.5E-09 2.2E-13 75.3 2.7 35 25-59 260-294 (511)
118 1pui_A ENGB, probable GTP-bind 98.7 1.2E-09 4E-14 69.8 -1.2 50 6-56 4-62 (210)
119 2ewv_A Twitching motility prot 98.7 4.9E-09 1.7E-13 73.2 1.6 33 25-57 136-169 (372)
120 3jvv_A Twitching mobility prot 98.7 5.3E-09 1.8E-13 72.7 1.6 32 25-56 123-155 (356)
121 2f1r_A Molybdopterin-guanine d 98.6 3.7E-09 1.2E-13 66.6 0.4 35 26-60 3-40 (171)
122 2j41_A Guanylate kinase; GMP, 98.6 1E-08 3.5E-13 65.3 2.6 30 25-54 6-35 (207)
123 1tf7_A KAIC; homohexamer, hexa 98.6 1E-08 3.5E-13 74.3 2.7 36 25-60 39-76 (525)
124 2qag_C Septin-7; cell cycle, c 98.6 5.9E-09 2E-13 73.9 1.3 48 5-53 11-59 (418)
125 4eun_A Thermoresistant glucoki 98.6 1.3E-08 4.6E-13 65.0 2.7 25 25-49 29-53 (200)
126 3ux8_A Excinuclease ABC, A sub 98.6 7.3E-09 2.5E-13 77.0 1.3 32 25-56 44-96 (670)
127 3tau_A Guanylate kinase, GMP k 98.6 1.9E-08 6.5E-13 64.7 2.7 27 25-51 8-34 (208)
128 3ec2_A DNA replication protein 98.6 1.2E-08 4.1E-13 64.0 1.5 30 25-54 38-67 (180)
129 1nij_A Hypothetical protein YJ 98.6 2.1E-08 7E-13 68.6 2.7 34 26-59 5-46 (318)
130 3uie_A Adenylyl-sulfate kinase 98.6 1.6E-08 5.5E-13 64.6 2.0 30 25-55 25-54 (200)
131 2bdt_A BH3686; alpha-beta prot 98.6 1.6E-08 5.4E-13 63.9 1.7 23 26-48 3-25 (189)
132 4e22_A Cytidylate kinase; P-lo 98.6 1E-08 3.5E-13 67.9 0.8 33 25-57 27-62 (252)
133 1kag_A SKI, shikimate kinase I 98.6 3.3E-08 1.1E-12 61.4 3.0 26 25-50 4-29 (173)
134 2kjq_A DNAA-related protein; s 98.6 3.6E-08 1.2E-12 60.6 3.1 28 24-51 35-62 (149)
135 1cr0_A DNA primase/helicase; R 98.5 3.1E-08 1.1E-12 66.7 2.8 30 25-54 35-64 (296)
136 2w0m_A SSO2452; RECA, SSPF, un 98.5 3.2E-08 1.1E-12 63.8 2.1 32 25-56 23-54 (235)
137 1rz3_A Hypothetical protein rb 98.5 4.1E-08 1.4E-12 62.8 2.4 32 25-56 22-53 (201)
138 3ney_A 55 kDa erythrocyte memb 98.5 6E-08 2.1E-12 62.4 2.9 29 22-50 16-44 (197)
139 1ewq_A DNA mismatch repair pro 98.5 6.4E-08 2.2E-12 73.1 2.6 31 25-55 576-607 (765)
140 1knq_A Gluconate kinase; ALFA/ 98.4 7.4E-08 2.5E-12 60.0 2.3 25 25-49 8-32 (175)
141 3tqc_A Pantothenate kinase; bi 98.4 9.8E-08 3.4E-12 65.5 3.0 24 27-50 94-117 (321)
142 2o8b_B DNA mismatch repair pro 98.4 1E-07 3.5E-12 73.9 3.4 25 25-50 789-813 (1022)
143 1in4_A RUVB, holliday junction 98.4 1.4E-07 4.9E-12 64.7 2.6 31 26-56 52-86 (334)
144 2x8a_A Nuclear valosin-contain 98.4 1.5E-07 5.1E-12 63.1 2.6 24 28-51 47-70 (274)
145 2vp4_A Deoxynucleoside kinase; 98.4 7E-08 2.4E-12 63.0 0.8 24 25-48 20-43 (230)
146 1wb9_A DNA mismatch repair pro 98.4 1.6E-07 5.6E-12 71.2 2.7 26 25-50 607-632 (800)
147 3cr8_A Sulfate adenylyltranfer 98.3 1.1E-07 3.7E-12 69.5 1.6 30 25-54 369-398 (552)
148 3ux8_A Excinuclease ABC, A sub 98.3 5.3E-08 1.8E-12 72.4 -0.1 22 25-46 348-369 (670)
149 1n0w_A DNA repair protein RAD5 98.3 2.4E-07 8.1E-12 60.2 2.8 24 25-48 24-47 (243)
150 1oix_A RAS-related protein RAB 98.3 2.2E-07 7.5E-12 58.7 2.5 25 27-51 31-55 (191)
151 1cke_A CK, MSSA, protein (cyti 98.3 1.5E-07 5E-12 60.8 1.6 32 26-57 6-40 (227)
152 2px0_A Flagellar biosynthesis 98.3 3.5E-07 1.2E-11 62.0 2.7 30 25-54 105-134 (296)
153 2f9l_A RAB11B, member RAS onco 98.3 3.8E-07 1.3E-11 57.8 2.4 24 27-50 7-30 (199)
154 3thx_B DNA mismatch repair pro 98.2 2.4E-07 8.3E-12 71.1 1.6 25 25-49 673-697 (918)
155 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 3.9E-07 1.3E-11 64.1 2.5 23 25-47 20-42 (392)
156 1vma_A Cell division protein F 98.2 3.8E-07 1.3E-11 62.2 2.4 33 25-57 104-136 (306)
157 1nlf_A Regulatory protein REPA 98.2 5.1E-07 1.7E-11 60.3 2.9 26 25-50 30-55 (279)
158 1ixz_A ATP-dependent metallopr 98.2 4.9E-07 1.7E-11 59.4 2.6 23 28-50 52-74 (254)
159 2www_A Methylmalonic aciduria 98.2 4.3E-07 1.5E-11 62.9 2.4 31 25-55 74-104 (349)
160 1pzn_A RAD51, DNA repair and r 98.2 4.8E-07 1.6E-11 62.7 2.6 25 25-49 131-155 (349)
161 2if2_A Dephospho-COA kinase; a 98.2 6E-07 2.1E-11 57.1 2.5 21 27-47 3-23 (204)
162 1iy2_A ATP-dependent metallopr 98.2 6.4E-07 2.2E-11 59.8 2.6 23 28-50 76-98 (278)
163 1jjv_A Dephospho-COA kinase; P 98.2 5.1E-07 1.7E-11 57.6 2.0 21 27-47 4-24 (206)
164 3thx_A DNA mismatch repair pro 98.2 5.7E-07 2E-11 69.2 2.5 24 25-48 662-685 (934)
165 2qt1_A Nicotinamide riboside k 98.2 6.1E-07 2.1E-11 57.3 2.0 25 25-49 21-45 (207)
166 3vaa_A Shikimate kinase, SK; s 98.2 9.1E-07 3.1E-11 56.3 2.7 26 25-50 25-50 (199)
167 2qor_A Guanylate kinase; phosp 98.2 9.1E-07 3.1E-11 56.5 2.8 26 25-50 12-37 (204)
168 1svm_A Large T antigen; AAA+ f 98.2 9E-07 3.1E-11 62.0 2.9 26 25-50 169-194 (377)
169 2cvh_A DNA repair and recombin 98.2 8.8E-07 3E-11 56.6 2.6 23 25-47 20-42 (220)
170 2vf7_A UVRA2, excinuclease ABC 98.2 3.6E-07 1.2E-11 69.6 0.7 26 25-50 523-549 (842)
171 2pez_A Bifunctional 3'-phospho 98.1 9.5E-07 3.2E-11 55.2 2.4 27 25-51 5-31 (179)
172 1sxj_E Activator 1 40 kDa subu 98.1 9.1E-07 3.1E-11 60.5 2.5 30 28-57 39-69 (354)
173 1tf7_A KAIC; homohexamer, hexa 98.1 1.1E-06 3.9E-11 63.6 2.9 28 25-52 281-308 (525)
174 3t61_A Gluconokinase; PSI-biol 98.1 1.3E-06 4.5E-11 55.5 2.8 26 25-50 18-43 (202)
175 3nwj_A ATSK2; P loop, shikimat 98.1 1.3E-06 4.4E-11 58.0 2.9 45 6-50 18-73 (250)
176 3m6a_A ATP-dependent protease 98.1 1.1E-06 3.6E-11 64.1 2.4 33 25-57 108-140 (543)
177 1odf_A YGR205W, hypothetical 3 98.1 1.1E-06 3.9E-11 59.4 2.0 27 25-51 31-57 (290)
178 1ls1_A Signal recognition part 98.1 1.4E-06 4.8E-11 59.0 2.3 34 24-57 97-130 (295)
179 1zu4_A FTSY; GTPase, signal re 98.0 1.7E-06 5.8E-11 59.3 2.3 34 25-58 105-138 (320)
180 2yvu_A Probable adenylyl-sulfa 98.0 2.1E-06 7.1E-11 53.9 2.4 30 25-54 13-42 (186)
181 2p67_A LAO/AO transport system 98.0 2.1E-06 7.2E-11 59.1 2.4 31 25-55 56-86 (341)
182 1np6_A Molybdopterin-guanine d 98.0 2.7E-06 9.2E-11 53.6 2.6 26 26-51 7-32 (174)
183 3lda_A DNA repair protein RAD5 98.0 2.5E-06 8.4E-11 60.2 2.5 27 25-51 178-206 (400)
184 1ex7_A Guanylate kinase; subst 98.0 2.9E-06 9.8E-11 54.0 2.6 24 26-49 2-25 (186)
185 2wji_A Ferrous iron transport 98.0 2.1E-06 7.3E-11 52.7 1.9 23 27-49 5-27 (165)
186 3kb2_A SPBC2 prophage-derived 98.0 3E-06 1E-10 52.2 2.5 24 27-50 3-26 (173)
187 1m7g_A Adenylylsulfate kinase; 98.0 1.8E-06 6.1E-11 55.4 1.3 30 25-54 25-54 (211)
188 2gj8_A MNME, tRNA modification 97.9 3.2E-06 1.1E-10 52.4 2.0 24 26-49 5-28 (172)
189 1qhx_A CPT, protein (chloramph 97.9 4.5E-06 1.6E-10 51.8 2.7 26 25-50 3-28 (178)
190 2ygr_A Uvrabc system protein A 97.9 2.9E-06 9.8E-11 65.6 1.9 22 25-46 668-689 (993)
191 2wjg_A FEOB, ferrous iron tran 97.9 3.7E-06 1.3E-10 52.3 2.1 22 27-48 9-30 (188)
192 1udx_A The GTP-binding protein 97.9 1.6E-06 5.5E-11 61.4 0.4 25 25-49 157-181 (416)
193 3k1j_A LON protease, ATP-depen 97.9 5.3E-06 1.8E-10 61.1 3.1 29 25-53 60-88 (604)
194 1ega_A Protein (GTP-binding pr 97.9 2.6E-06 8.9E-11 57.7 1.4 25 25-49 8-32 (301)
195 2dr3_A UPF0273 protein PH0284; 97.9 6E-06 2.1E-10 53.5 2.8 24 25-48 23-46 (247)
196 1via_A Shikimate kinase; struc 97.9 5.9E-06 2E-10 51.3 2.7 24 27-50 6-29 (175)
197 1lv7_A FTSH; alpha/beta domain 97.9 5.6E-06 1.9E-10 54.4 2.6 25 26-50 46-70 (257)
198 2ze6_A Isopentenyl transferase 97.9 5.7E-06 1.9E-10 54.7 2.5 24 27-50 3-26 (253)
199 2r6f_A Excinuclease ABC subuni 97.9 3E-06 1E-10 65.3 1.1 22 25-46 650-671 (972)
200 3lw7_A Adenylate kinase relate 97.9 5.1E-06 1.8E-10 50.9 2.0 19 27-45 3-21 (179)
201 3cm0_A Adenylate kinase; ATP-b 97.9 4.2E-06 1.4E-10 52.3 1.6 24 26-49 5-28 (186)
202 2zej_A Dardarin, leucine-rich 97.9 4E-06 1.4E-10 52.4 1.3 22 27-48 4-25 (184)
203 4eaq_A DTMP kinase, thymidylat 97.8 8.1E-06 2.8E-10 53.3 2.8 27 25-51 26-52 (229)
204 1q3t_A Cytidylate kinase; nucl 97.8 9E-06 3.1E-10 53.0 2.8 25 25-49 16-40 (236)
205 1sxj_C Activator 1 40 kDa subu 97.8 8.4E-06 2.9E-10 55.8 2.7 26 28-53 49-74 (340)
206 2jaq_A Deoxyguanosine kinase; 97.8 8.2E-06 2.8E-10 51.4 2.5 23 27-49 2-24 (205)
207 1kht_A Adenylate kinase; phosp 97.8 8E-06 2.7E-10 51.0 2.4 26 25-50 3-28 (192)
208 1ly1_A Polynucleotide kinase; 97.8 7.4E-06 2.5E-10 50.7 2.1 22 26-47 3-24 (181)
209 1gtv_A TMK, thymidylate kinase 97.8 4.1E-06 1.4E-10 53.4 0.7 24 27-50 2-25 (214)
210 3t34_A Dynamin-related protein 97.8 9.2E-06 3.1E-10 56.2 2.5 24 25-48 34-57 (360)
211 1j8m_F SRP54, signal recogniti 97.8 1.1E-05 3.7E-10 54.8 2.7 33 25-57 98-130 (297)
212 1gvn_B Zeta; postsegregational 97.8 8.8E-06 3E-10 54.8 2.2 25 25-49 33-57 (287)
213 2rhm_A Putative kinase; P-loop 97.8 9.4E-06 3.2E-10 50.8 2.2 25 25-49 5-29 (193)
214 2p5t_B PEZT; postsegregational 97.8 7.1E-06 2.4E-10 54.1 1.6 26 25-50 32-57 (253)
215 3iij_A Coilin-interacting nucl 97.8 1.2E-05 4.2E-10 50.0 2.6 25 25-49 11-35 (180)
216 3hr8_A Protein RECA; alpha and 97.8 1.1E-05 3.6E-10 56.2 2.4 31 25-55 61-91 (356)
217 1y63_A LMAJ004144AAA protein; 97.8 1.2E-05 4.1E-10 50.5 2.4 24 25-48 10-33 (184)
218 1xjc_A MOBB protein homolog; s 97.8 1.4E-05 4.7E-10 50.2 2.6 26 26-51 5-30 (169)
219 1vht_A Dephospho-COA kinase; s 97.8 1.1E-05 3.7E-10 51.8 2.2 22 26-47 5-26 (218)
220 3lxx_A GTPase IMAP family memb 97.7 1.2E-05 4E-10 52.4 2.3 24 27-50 31-54 (239)
221 3trf_A Shikimate kinase, SK; a 97.7 1.6E-05 5.4E-10 49.6 2.8 25 26-50 6-30 (185)
222 3r20_A Cytidylate kinase; stru 97.7 1.4E-05 4.7E-10 52.6 2.5 24 26-49 10-33 (233)
223 3k53_A Ferrous iron transport 97.7 1.1E-05 3.8E-10 53.6 2.1 24 27-50 5-28 (271)
224 1nks_A Adenylate kinase; therm 97.7 1.3E-05 4.5E-10 50.0 2.3 24 27-50 3-26 (194)
225 2ffh_A Protein (FFH); SRP54, s 97.7 1.5E-05 5.1E-10 56.6 2.6 34 24-57 97-130 (425)
226 1mky_A Probable GTP-binding pr 97.7 1.2E-05 4.3E-10 57.0 2.1 23 27-49 182-204 (439)
227 2w58_A DNAI, primosome compone 97.7 2.2E-05 7.5E-10 49.7 3.1 27 26-52 55-81 (202)
228 3pqc_A Probable GTP-binding pr 97.7 2.8E-05 9.6E-10 48.3 3.5 24 26-49 24-47 (195)
229 3pih_A Uvrabc system protein A 97.7 1.6E-05 5.4E-10 61.2 2.7 18 25-42 610-627 (916)
230 2dhr_A FTSH; AAA+ protein, hex 97.7 1.6E-05 5.5E-10 57.5 2.5 23 28-50 67-89 (499)
231 3cf0_A Transitional endoplasmi 97.7 1.9E-05 6.6E-10 53.3 2.8 26 25-50 49-74 (301)
232 1uf9_A TT1252 protein; P-loop, 97.7 1.7E-05 5.7E-10 50.1 2.3 23 26-48 9-31 (203)
233 3ake_A Cytidylate kinase; CMP 97.7 1.9E-05 6.6E-10 49.9 2.5 24 27-50 4-27 (208)
234 2v54_A DTMP kinase, thymidylat 97.7 2E-05 6.7E-10 49.8 2.5 25 25-49 4-28 (204)
235 4fcw_A Chaperone protein CLPB; 97.7 2.2E-05 7.5E-10 52.7 2.7 29 26-54 48-76 (311)
236 2ohf_A Protein OLA1, GTP-bindi 97.7 1.9E-05 6.4E-10 55.7 2.4 24 25-48 22-45 (396)
237 2qtf_A Protein HFLX, GTP-bindi 97.7 1.5E-05 5E-10 55.5 1.8 24 27-50 181-204 (364)
238 2z0h_A DTMP kinase, thymidylat 97.7 1.9E-05 6.7E-10 49.5 2.2 23 27-49 2-24 (197)
239 2c95_A Adenylate kinase 1; tra 97.7 2.7E-05 9.3E-10 48.8 2.9 25 25-49 9-33 (196)
240 2wwf_A Thymidilate kinase, put 97.6 2.3E-05 8E-10 49.7 2.5 25 25-49 10-34 (212)
241 2vli_A Antibiotic resistance p 97.6 2.8E-05 9.6E-10 48.3 2.8 26 25-50 5-30 (183)
242 3kl4_A SRP54, signal recogniti 97.6 1.5E-05 5.2E-10 56.7 1.7 32 25-56 97-128 (433)
243 3bos_A Putative DNA replicatio 97.6 2.7E-05 9.2E-10 50.0 2.8 27 25-51 52-78 (242)
244 1tev_A UMP-CMP kinase; ploop, 97.6 2E-05 6.9E-10 49.2 2.1 24 26-49 4-27 (196)
245 2ged_A SR-beta, signal recogni 97.6 2.4E-05 8.3E-10 48.8 2.4 24 26-49 49-72 (193)
246 2plr_A DTMP kinase, probable t 97.6 2.4E-05 8.3E-10 49.5 2.4 26 25-50 4-29 (213)
247 2bwj_A Adenylate kinase 5; pho 97.6 2.7E-05 9.3E-10 48.9 2.5 25 25-49 12-36 (199)
248 4ag6_A VIRB4 ATPase, type IV s 97.6 3.5E-05 1.2E-09 53.7 3.2 33 25-57 35-67 (392)
249 2qby_A CDC6 homolog 1, cell di 97.6 3.4E-05 1.2E-09 52.8 3.0 27 25-51 45-71 (386)
250 1nn5_A Similar to deoxythymidy 97.6 3E-05 1E-09 49.3 2.6 25 25-49 9-33 (215)
251 1ypw_A Transitional endoplasmi 97.6 2.2E-05 7.7E-10 59.6 2.2 27 25-51 238-264 (806)
252 1fnn_A CDC6P, cell division co 97.6 3.6E-05 1.2E-09 52.9 3.0 26 27-52 46-71 (389)
253 1z2a_A RAS-related protein RAB 97.6 3.2E-05 1.1E-09 46.9 2.4 22 28-49 8-29 (168)
254 1e6c_A Shikimate kinase; phosp 97.6 3.6E-05 1.2E-09 47.4 2.6 24 26-49 3-26 (173)
255 1l8q_A Chromosomal replication 97.6 3.7E-05 1.3E-09 52.1 2.9 25 26-50 38-62 (324)
256 3b9p_A CG5977-PA, isoform A; A 97.6 3.5E-05 1.2E-09 51.5 2.7 26 25-50 54-79 (297)
257 2ga8_A Hypothetical 39.9 kDa p 97.6 3.9E-05 1.3E-09 53.4 2.9 23 28-50 27-49 (359)
258 2ce2_X GTPase HRAS; signaling 97.6 3.6E-05 1.2E-09 46.3 2.5 22 28-49 6-27 (166)
259 2iyv_A Shikimate kinase, SK; t 97.6 4.5E-05 1.5E-09 47.6 2.9 24 26-49 3-26 (184)
260 2dyk_A GTP-binding protein; GT 97.6 3.6E-05 1.2E-09 46.4 2.4 23 27-49 3-25 (161)
261 1g16_A RAS-related protein SEC 97.6 3.9E-05 1.3E-09 46.6 2.5 22 28-49 6-27 (170)
262 1kao_A RAP2A; GTP-binding prot 97.6 3.7E-05 1.3E-09 46.4 2.4 22 28-49 6-27 (167)
263 1zak_A Adenylate kinase; ATP:A 97.6 4.7E-05 1.6E-09 49.0 3.0 25 26-50 6-30 (222)
264 1m2o_B GTP-binding protein SAR 97.5 3.9E-05 1.3E-09 48.1 2.5 23 26-48 24-46 (190)
265 1qf9_A UMP/CMP kinase, protein 97.5 3.5E-05 1.2E-09 48.0 2.3 24 26-49 7-30 (194)
266 3fb4_A Adenylate kinase; psych 97.5 3.3E-05 1.1E-09 49.3 2.2 22 28-49 3-24 (216)
267 1z0j_A RAB-22, RAS-related pro 97.5 3.9E-05 1.3E-09 46.6 2.4 23 27-49 8-30 (170)
268 1ek0_A Protein (GTP-binding pr 97.5 4E-05 1.4E-09 46.5 2.4 22 28-49 6-27 (170)
269 1u8z_A RAS-related protein RAL 97.5 4E-05 1.4E-09 46.3 2.4 23 27-49 6-28 (168)
270 1z08_A RAS-related protein RAB 97.5 4E-05 1.4E-09 46.6 2.4 23 27-49 8-30 (170)
271 1jbk_A CLPB protein; beta barr 97.5 4.5E-05 1.6E-09 47.0 2.7 26 25-50 43-68 (195)
272 2pbr_A DTMP kinase, thymidylat 97.5 3.6E-05 1.2E-09 48.1 2.2 23 27-49 2-24 (195)
273 3b1v_A Ferrous iron uptake tra 97.5 3E-05 1E-09 51.9 1.9 22 27-48 5-26 (272)
274 2fn4_A P23, RAS-related protei 97.5 4.4E-05 1.5E-09 46.8 2.5 23 27-49 11-33 (181)
275 2nzj_A GTP-binding protein REM 97.5 3.2E-05 1.1E-09 47.2 1.9 23 27-49 6-28 (175)
276 1zd8_A GTP:AMP phosphotransfer 97.5 4.4E-05 1.5E-09 49.3 2.6 24 26-49 8-31 (227)
277 1wms_A RAB-9, RAB9, RAS-relate 97.5 4.3E-05 1.5E-09 46.8 2.4 23 27-49 9-31 (177)
278 1ky3_A GTP-binding protein YPT 97.5 4.3E-05 1.5E-09 46.9 2.4 23 27-49 10-32 (182)
279 1c1y_A RAS-related protein RAP 97.5 4.4E-05 1.5E-09 46.2 2.4 21 28-48 6-26 (167)
280 1a7j_A Phosphoribulokinase; tr 97.5 4.4E-05 1.5E-09 51.5 2.6 25 26-50 6-30 (290)
281 2erx_A GTP-binding protein DI- 97.5 3.9E-05 1.3E-09 46.6 2.1 21 28-48 6-26 (172)
282 3dl0_A Adenylate kinase; phosp 97.5 4E-05 1.4E-09 49.0 2.2 22 28-49 3-24 (216)
283 1svi_A GTP-binding protein YSX 97.5 4.2E-05 1.4E-09 47.7 2.2 23 26-48 24-46 (195)
284 2z4s_A Chromosomal replication 97.5 4.9E-05 1.7E-09 54.0 2.8 25 26-50 131-155 (440)
285 1fzq_A ADP-ribosylation factor 97.5 4.3E-05 1.5E-09 47.5 2.2 22 27-48 18-39 (181)
286 1r2q_A RAS-related protein RAB 97.5 5E-05 1.7E-09 46.0 2.4 22 27-48 8-29 (170)
287 2pt5_A Shikimate kinase, SK; a 97.5 4.4E-05 1.5E-09 46.8 2.1 23 27-49 2-24 (168)
288 1f6b_A SAR1; gtpases, N-termin 97.5 4.2E-05 1.4E-09 48.3 2.0 22 26-47 26-47 (198)
289 1ukz_A Uridylate kinase; trans 97.5 4.5E-05 1.5E-09 48.2 2.2 25 25-49 15-39 (203)
290 2cxx_A Probable GTP-binding pr 97.5 4.3E-05 1.5E-09 47.3 2.1 22 28-49 4-25 (190)
291 2lkc_A Translation initiation 97.5 4.3E-05 1.5E-09 46.8 2.0 23 26-48 9-31 (178)
292 2y8e_A RAB-protein 6, GH09086P 97.5 5.5E-05 1.9E-09 46.3 2.5 22 27-48 16-37 (179)
293 3q85_A GTP-binding protein REM 97.5 4.1E-05 1.4E-09 46.6 1.9 21 28-48 5-25 (169)
294 2oil_A CATX-8, RAS-related pro 97.5 5.1E-05 1.7E-09 47.4 2.4 23 27-49 27-49 (193)
295 3bc1_A RAS-related protein RAB 97.5 5.2E-05 1.8E-09 46.9 2.4 23 27-49 13-35 (195)
296 3clv_A RAB5 protein, putative; 97.5 5.2E-05 1.8E-09 47.2 2.4 23 27-49 9-31 (208)
297 4dsu_A GTPase KRAS, isoform 2B 97.5 5.3E-05 1.8E-09 46.8 2.4 22 28-49 7-28 (189)
298 1upt_A ARL1, ADP-ribosylation 97.5 5.4E-05 1.8E-09 46.0 2.4 22 27-48 9-30 (171)
299 2qag_A Septin-2, protein NEDD5 97.5 2.5E-05 8.6E-10 54.2 1.0 22 27-48 39-60 (361)
300 2cdn_A Adenylate kinase; phosp 97.5 5.6E-05 1.9E-09 47.8 2.5 25 25-49 20-44 (201)
301 1njg_A DNA polymerase III subu 97.5 6.5E-05 2.2E-09 47.8 2.8 25 26-50 46-70 (250)
302 3q72_A GTP-binding protein RAD 97.5 5.2E-05 1.8E-09 45.9 2.2 21 28-48 5-25 (166)
303 1moz_A ARL1, ADP-ribosylation 97.5 3.7E-05 1.3E-09 47.4 1.5 21 27-47 20-40 (183)
304 3lxw_A GTPase IMAP family memb 97.5 4.6E-05 1.6E-09 50.1 2.0 23 27-49 23-45 (247)
305 1r8s_A ADP-ribosylation factor 97.5 6.1E-05 2.1E-09 45.6 2.4 22 28-49 3-24 (164)
306 2zr9_A Protein RECA, recombina 97.5 6.6E-05 2.3E-09 52.0 2.8 26 25-50 61-86 (349)
307 2xb4_A Adenylate kinase; ATP-b 97.4 5.3E-05 1.8E-09 49.0 2.2 23 27-49 2-24 (223)
308 3t1o_A Gliding protein MGLA; G 97.4 6.3E-05 2.2E-09 46.7 2.4 24 27-50 16-39 (198)
309 2bme_A RAB4A, RAS-related prot 97.4 6.7E-05 2.3E-09 46.4 2.5 23 27-49 12-34 (186)
310 2hxs_A RAB-26, RAS-related pro 97.4 6E-05 2E-09 46.2 2.3 23 27-49 8-30 (178)
311 2a9k_A RAS-related protein RAL 97.4 6.4E-05 2.2E-09 46.3 2.4 23 27-49 20-42 (187)
312 3con_A GTPase NRAS; structural 97.4 6.4E-05 2.2E-09 46.7 2.4 23 27-49 23-45 (190)
313 1z0f_A RAB14, member RAS oncog 97.4 6.5E-05 2.2E-09 45.9 2.4 23 27-49 17-39 (179)
314 2g6b_A RAS-related protein RAB 97.4 6.5E-05 2.2E-09 46.1 2.4 24 27-50 12-35 (180)
315 1aky_A Adenylate kinase; ATP:A 97.4 7.7E-05 2.6E-09 47.9 2.8 24 26-49 5-28 (220)
316 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 5.6E-05 1.9E-09 50.0 2.2 24 26-49 5-28 (260)
317 1uj2_A Uridine-cytidine kinase 97.4 6.8E-05 2.3E-09 49.3 2.5 25 26-50 23-47 (252)
318 3h4m_A Proteasome-activating n 97.4 7.2E-05 2.5E-09 49.6 2.7 26 25-50 51-76 (285)
319 1m7b_A RND3/RHOE small GTP-bin 97.4 7.2E-05 2.5E-09 46.4 2.5 23 27-49 9-31 (184)
320 1zuh_A Shikimate kinase; alpha 97.4 7.8E-05 2.7E-09 45.8 2.6 25 26-50 8-32 (168)
321 1nrj_B SR-beta, signal recogni 97.4 6.8E-05 2.3E-09 47.7 2.4 25 26-50 13-37 (218)
322 3tw8_B RAS-related protein RAB 97.4 6E-05 2E-09 46.2 2.1 22 27-48 11-32 (181)
323 3iev_A GTP-binding protein ERA 97.4 4.9E-05 1.7E-09 51.6 1.8 24 25-48 10-33 (308)
324 2ce7_A Cell division protein F 97.4 6.4E-05 2.2E-09 54.1 2.4 25 26-50 50-74 (476)
325 1wf3_A GTP-binding protein; GT 97.4 5.7E-05 1.9E-09 51.2 2.0 23 26-48 8-30 (301)
326 2bov_A RAla, RAS-related prote 97.4 7.3E-05 2.5E-09 46.9 2.4 23 27-49 16-38 (206)
327 2gf0_A GTP-binding protein DI- 97.4 7.7E-05 2.6E-09 46.6 2.5 22 27-48 10-31 (199)
328 2fg5_A RAB-22B, RAS-related pr 97.4 7.7E-05 2.6E-09 46.6 2.5 23 27-49 25-47 (192)
329 2efe_B Small GTP-binding prote 97.4 7.5E-05 2.5E-09 45.9 2.4 23 27-49 14-36 (181)
330 3iby_A Ferrous iron transport 97.4 6.4E-05 2.2E-09 49.8 2.2 22 27-48 3-24 (256)
331 1vg8_A RAS-related protein RAB 97.4 7.7E-05 2.6E-09 46.9 2.4 23 27-49 10-32 (207)
332 2grj_A Dephospho-COA kinase; T 97.4 6.9E-05 2.4E-09 47.7 2.2 24 26-49 13-36 (192)
333 2p65_A Hypothetical protein PF 97.4 5.6E-05 1.9E-09 46.6 1.7 26 25-50 43-68 (187)
334 2gf9_A RAS-related protein RAB 97.4 8E-05 2.7E-09 46.4 2.4 23 27-49 24-46 (189)
335 2e87_A Hypothetical protein PH 97.4 4.2E-05 1.4E-09 52.8 1.2 25 25-49 167-191 (357)
336 3tkl_A RAS-related protein RAB 97.4 8.1E-05 2.8E-09 46.4 2.4 23 27-49 18-40 (196)
337 3oes_A GTPase rhebl1; small GT 97.4 8.5E-05 2.9E-09 46.8 2.5 24 27-50 26-49 (201)
338 3ihw_A Centg3; RAS, centaurin, 97.4 8.2E-05 2.8E-09 46.4 2.4 23 27-49 22-44 (184)
339 1e4v_A Adenylate kinase; trans 97.4 7.8E-05 2.7E-09 47.7 2.3 22 28-49 3-24 (214)
340 2dby_A GTP-binding protein; GD 97.4 7.7E-05 2.6E-09 52.1 2.4 23 27-49 3-25 (368)
341 2f6r_A COA synthase, bifunctio 97.4 7.3E-05 2.5E-09 50.1 2.3 22 26-47 76-97 (281)
342 1mh1_A RAC1; GTP-binding, GTPa 97.4 8.7E-05 3E-09 45.7 2.4 23 27-49 7-29 (186)
343 3kkq_A RAS-related protein M-R 97.4 8.8E-05 3E-09 45.8 2.4 22 27-48 20-41 (183)
344 2cjw_A GTP-binding protein GEM 97.4 8.7E-05 3E-09 46.7 2.4 22 27-48 8-29 (192)
345 1ltq_A Polynucleotide kinase; 97.4 7.4E-05 2.5E-09 50.0 2.2 22 26-47 3-24 (301)
346 2xtp_A GTPase IMAP family memb 97.4 7.6E-05 2.6E-09 49.0 2.2 23 26-48 23-45 (260)
347 3t5g_A GTP-binding protein RHE 97.4 9.5E-05 3.3E-09 45.5 2.5 22 27-48 8-29 (181)
348 1z06_A RAS-related protein RAB 97.4 9E-05 3.1E-09 46.1 2.4 23 27-49 22-44 (189)
349 1jwy_B Dynamin A GTPase domain 97.4 7.4E-05 2.5E-09 50.3 2.1 25 25-49 24-48 (315)
350 2ew1_A RAS-related protein RAB 97.4 9.4E-05 3.2E-09 47.0 2.5 23 27-49 28-50 (201)
351 2dy1_A Elongation factor G; tr 97.4 8.7E-05 3E-09 55.3 2.6 32 25-56 9-42 (665)
352 2bcg_Y Protein YP2, GTP-bindin 97.3 9.8E-05 3.4E-09 46.6 2.5 23 27-49 10-32 (206)
353 1sxj_D Activator 1 41 kDa subu 97.3 9.4E-05 3.2E-09 50.3 2.5 25 26-50 59-83 (353)
354 3dz8_A RAS-related protein RAB 97.3 0.0001 3.4E-09 46.0 2.5 23 27-49 25-47 (191)
355 3tlx_A Adenylate kinase 2; str 97.3 8.4E-05 2.9E-09 48.7 2.2 24 25-48 29-52 (243)
356 3n70_A Transport activator; si 97.3 0.00011 3.8E-09 44.4 2.6 26 25-50 24-49 (145)
357 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00011 3.7E-09 48.0 2.7 26 25-50 39-64 (262)
358 3i8s_A Ferrous iron transport 97.3 8.5E-05 2.9E-09 49.6 2.2 23 27-49 5-27 (274)
359 2a5j_A RAS-related protein RAB 97.3 9.9E-05 3.4E-09 46.1 2.4 23 27-49 23-45 (191)
360 3llm_A ATP-dependent RNA helic 97.3 0.00011 3.8E-09 47.7 2.6 23 25-47 76-98 (235)
361 3cph_A RAS-related protein SEC 97.3 0.0001 3.5E-09 46.5 2.4 23 27-49 22-44 (213)
362 2wsm_A Hydrogenase expression/ 97.3 0.0001 3.5E-09 47.0 2.4 24 26-49 31-54 (221)
363 3d3q_A TRNA delta(2)-isopenten 97.3 0.0001 3.6E-09 50.9 2.5 25 26-50 8-32 (340)
364 1zd9_A ADP-ribosylation factor 97.3 0.00011 3.7E-09 45.8 2.4 23 27-49 24-46 (188)
365 1x3s_A RAS-related protein RAB 97.3 0.00011 3.7E-09 45.7 2.4 23 27-49 17-39 (195)
366 3bwd_D RAC-like GTP-binding pr 97.3 0.00011 3.7E-09 45.2 2.4 23 27-49 10-32 (182)
367 2atv_A RERG, RAS-like estrogen 97.3 0.00011 3.7E-09 46.1 2.4 23 27-49 30-52 (196)
368 2p5s_A RAS and EF-hand domain 97.3 0.00011 3.6E-09 46.3 2.4 23 27-49 30-52 (199)
369 3a1s_A Iron(II) transport prot 97.3 9E-05 3.1E-09 49.1 2.1 23 27-49 7-29 (258)
370 2aka_B Dynamin-1; fusion prote 97.3 9.3E-05 3.2E-09 49.4 2.2 26 25-50 26-51 (299)
371 3reg_A RHO-like small GTPase; 97.3 0.00011 3.8E-09 45.9 2.4 23 27-49 25-47 (194)
372 2h17_A ADP-ribosylation factor 97.3 9.6E-05 3.3E-09 45.7 2.0 22 27-48 23-44 (181)
373 1zj6_A ADP-ribosylation factor 97.3 0.0001 3.5E-09 45.8 2.2 22 27-48 18-39 (187)
374 1zbd_A Rabphilin-3A; G protein 97.3 9.8E-05 3.3E-09 46.4 2.1 23 27-49 10-32 (203)
375 2fv8_A H6, RHO-related GTP-bin 97.3 0.00012 4.1E-09 46.4 2.5 23 27-49 27-49 (207)
376 1gwn_A RHO-related GTP-binding 97.3 0.00012 4.1E-09 46.6 2.5 24 27-50 30-53 (205)
377 3t15_A Ribulose bisphosphate c 97.3 0.00014 4.7E-09 49.0 2.9 26 26-51 37-62 (293)
378 2o52_A RAS-related protein RAB 97.3 9.8E-05 3.4E-09 46.6 2.0 22 27-48 27-48 (200)
379 1ksh_A ARF-like protein 2; sma 97.3 8.1E-05 2.8E-09 46.1 1.6 22 27-48 20-41 (186)
380 3be4_A Adenylate kinase; malar 97.3 0.00012 4.1E-09 47.0 2.3 24 26-49 6-29 (217)
381 3t5d_A Septin-7; GTP-binding p 97.3 0.00011 3.7E-09 48.9 2.2 20 28-47 11-30 (274)
382 1jal_A YCHF protein; nucleotid 97.3 0.00012 4.2E-09 51.0 2.4 22 27-48 4-25 (363)
383 2fu5_C RAS-related protein RAB 97.3 8.6E-05 2.9E-09 45.8 1.5 22 27-48 10-31 (183)
384 3cbq_A GTP-binding protein REM 97.3 9E-05 3.1E-09 46.7 1.6 22 27-48 25-46 (195)
385 3c5c_A RAS-like protein 12; GD 97.3 0.00014 4.7E-09 45.4 2.4 23 27-49 23-45 (187)
386 2gco_A H9, RHO-related GTP-bin 97.3 0.00014 4.9E-09 45.8 2.5 23 27-49 27-49 (201)
387 2fh5_B SR-beta, signal recogni 97.3 0.00014 4.7E-09 46.1 2.4 24 27-50 9-32 (214)
388 3zvl_A Bifunctional polynucleo 97.2 0.0001 3.5E-09 52.1 1.9 25 25-49 258-282 (416)
389 3syl_A Protein CBBX; photosynt 97.2 0.00017 5.7E-09 48.4 2.9 25 26-50 68-92 (309)
390 2iwr_A Centaurin gamma 1; ANK 97.2 9.2E-05 3.2E-09 45.5 1.5 23 27-49 9-31 (178)
391 2qmh_A HPR kinase/phosphorylas 97.2 0.00018 6.3E-09 46.3 2.8 27 22-48 31-57 (205)
392 3crm_A TRNA delta(2)-isopenten 97.2 0.00014 4.9E-09 49.9 2.4 25 26-50 6-30 (323)
393 2atx_A Small GTP binding prote 97.2 0.00016 5.5E-09 45.1 2.5 23 27-49 20-42 (194)
394 2qu8_A Putative nucleolar GTP- 97.2 0.0001 3.4E-09 47.5 1.6 23 26-48 30-52 (228)
395 2il1_A RAB12; G-protein, GDP, 97.2 0.00013 4.6E-09 45.6 2.1 22 27-48 28-49 (192)
396 3exa_A TRNA delta(2)-isopenten 97.2 0.00013 4.4E-09 50.1 2.1 25 26-50 4-28 (322)
397 1ofh_A ATP-dependent HSL prote 97.2 0.00019 6.6E-09 47.8 2.9 26 25-50 50-75 (310)
398 3llu_A RAS-related GTP-binding 97.2 0.00014 4.7E-09 45.7 2.0 22 27-48 22-43 (196)
399 2f7s_A C25KG, RAS-related prot 97.2 0.00013 4.3E-09 46.4 1.8 22 27-48 27-48 (217)
400 1ak2_A Adenylate kinase isoenz 97.2 0.00017 5.8E-09 46.8 2.5 25 25-49 16-40 (233)
401 2hf9_A Probable hydrogenase ni 97.2 0.0002 7E-09 45.8 2.8 25 26-50 39-63 (226)
402 2r62_A Cell division protease 97.2 8.6E-05 2.9E-09 48.9 1.1 25 26-50 45-69 (268)
403 2v3c_C SRP54, signal recogniti 97.2 0.00023 7.8E-09 50.7 3.3 25 26-50 100-124 (432)
404 2j1l_A RHO-related GTP-binding 97.2 0.00016 5.6E-09 46.0 2.3 22 27-48 36-57 (214)
405 2h92_A Cytidylate kinase; ross 97.2 0.00022 7.5E-09 45.6 2.9 24 26-49 4-27 (219)
406 3def_A T7I23.11 protein; chlor 97.2 0.00015 5.2E-09 47.9 2.2 23 27-49 38-60 (262)
407 3umf_A Adenylate kinase; rossm 97.2 0.00016 5.3E-09 47.0 2.1 25 25-49 29-53 (217)
408 2chg_A Replication factor C sm 97.2 0.00019 6.7E-09 45.1 2.5 24 26-49 39-62 (226)
409 1ypw_A Transitional endoplasmi 97.2 0.00011 3.8E-09 55.9 1.6 28 25-52 511-538 (806)
410 2h57_A ADP-ribosylation factor 97.2 0.00013 4.5E-09 45.4 1.7 23 27-49 23-45 (190)
411 3lv8_A DTMP kinase, thymidylat 97.2 0.00023 7.7E-09 46.8 2.8 26 25-50 27-52 (236)
412 4dhe_A Probable GTP-binding pr 97.2 5.3E-05 1.8E-09 48.3 -0.2 23 26-48 30-52 (223)
413 4b4t_K 26S protease regulatory 97.2 0.00018 6.3E-09 51.1 2.5 25 27-51 208-232 (428)
414 2q3h_A RAS homolog gene family 97.2 0.00018 6.1E-09 45.1 2.2 22 27-48 22-43 (201)
415 2hup_A RAS-related protein RAB 97.2 0.0002 6.9E-09 45.2 2.5 23 27-49 31-53 (201)
416 2v1u_A Cell division control p 97.2 0.00018 6E-09 49.3 2.4 25 25-49 44-68 (387)
417 3hws_A ATP-dependent CLP prote 97.2 0.00022 7.6E-09 49.1 2.9 26 25-50 51-76 (363)
418 2b6h_A ADP-ribosylation factor 97.2 0.00018 6E-09 45.1 2.2 21 27-47 31-51 (192)
419 4bas_A ADP-ribosylation factor 97.2 0.00017 5.7E-09 45.0 2.1 24 26-49 18-41 (199)
420 3uk6_A RUVB-like 2; hexameric 97.2 0.00023 7.8E-09 48.8 2.9 26 26-51 71-96 (368)
421 3foz_A TRNA delta(2)-isopenten 97.2 0.00016 5.5E-09 49.5 2.1 26 25-50 10-35 (316)
422 1d2n_A N-ethylmaleimide-sensit 97.2 0.00018 6.2E-09 47.6 2.2 25 26-50 65-89 (272)
423 1h65_A Chloroplast outer envel 97.1 0.00018 6.3E-09 47.7 2.2 23 27-49 41-63 (270)
424 4gzl_A RAS-related C3 botulinu 97.1 0.00023 7.8E-09 45.0 2.5 22 27-48 32-53 (204)
425 3v9p_A DTMP kinase, thymidylat 97.1 0.00023 8E-09 46.5 2.6 26 25-50 25-50 (227)
426 3cpj_B GTP-binding protein YPT 97.1 0.00021 7.2E-09 45.8 2.4 23 27-49 15-37 (223)
427 4b4t_M 26S protease regulatory 97.1 0.00021 7.3E-09 50.9 2.5 26 26-51 216-241 (434)
428 3p32_A Probable GTPase RV1496/ 97.1 0.00023 7.9E-09 49.2 2.5 25 26-50 80-104 (355)
429 3cnl_A YLQF, putative uncharac 97.1 0.00021 7.1E-09 47.6 2.2 24 27-50 101-124 (262)
430 3a8t_A Adenylate isopentenyltr 97.1 0.00019 6.7E-09 49.5 2.1 25 26-50 41-65 (339)
431 4tmk_A Protein (thymidylate ki 97.1 0.0003 1E-08 45.5 2.8 26 25-50 3-28 (213)
432 4edh_A DTMP kinase, thymidylat 97.1 0.00024 8.1E-09 45.9 2.4 26 25-50 6-31 (213)
433 3dm5_A SRP54, signal recogniti 97.1 0.00025 8.4E-09 50.7 2.6 28 25-52 100-127 (443)
434 4b4t_L 26S protease subunit RP 97.1 0.00024 8.1E-09 50.7 2.5 27 26-52 216-242 (437)
435 3q3j_B RHO-related GTP-binding 97.1 0.00024 8.3E-09 45.3 2.4 23 27-49 29-51 (214)
436 2yc2_C IFT27, small RAB-relate 97.1 9.1E-05 3.1E-09 46.5 0.3 22 27-48 22-43 (208)
437 2g3y_A GTP-binding protein GEM 97.1 0.00019 6.6E-09 46.1 1.9 21 27-47 39-59 (211)
438 2x77_A ADP-ribosylation factor 97.1 0.00017 5.7E-09 44.8 1.5 20 27-46 24-43 (189)
439 2j0v_A RAC-like GTP-binding pr 97.1 0.00027 9.2E-09 44.7 2.5 23 27-49 11-33 (212)
440 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00027 9.3E-09 48.2 2.7 24 26-49 46-69 (322)
441 2r6a_A DNAB helicase, replicat 97.1 0.00027 9.3E-09 50.3 2.7 27 25-51 203-229 (454)
442 3eie_A Vacuolar protein sortin 97.1 0.00022 7.5E-09 48.5 2.2 25 26-50 52-76 (322)
443 3ice_A Transcription terminati 97.1 0.00028 9.6E-09 49.9 2.7 26 25-50 174-199 (422)
444 2qgz_A Helicase loader, putati 97.1 0.00029 1E-08 47.8 2.8 25 26-50 153-177 (308)
445 3sr0_A Adenylate kinase; phosp 97.1 0.00024 8.2E-09 45.7 2.2 23 28-50 3-25 (206)
446 1v5w_A DMC1, meiotic recombina 97.1 0.00024 8.3E-09 48.9 2.2 24 25-48 122-145 (343)
447 2ius_A DNA translocase FTSK; n 97.1 0.00039 1.3E-08 50.5 3.3 26 22-47 163-189 (512)
448 4b4t_J 26S protease regulatory 97.0 0.00028 9.7E-09 49.8 2.5 27 26-52 183-209 (405)
449 2ocp_A DGK, deoxyguanosine kin 97.0 0.00027 9.3E-09 46.0 2.2 24 26-49 3-26 (241)
450 1um8_A ATP-dependent CLP prote 97.0 0.00036 1.2E-08 48.3 2.9 26 25-50 72-97 (376)
451 3pfi_A Holliday junction ATP-d 97.0 0.00043 1.5E-08 47.0 3.1 26 26-51 56-81 (338)
452 2r44_A Uncharacterized protein 97.0 0.00025 8.7E-09 48.1 2.0 28 25-52 46-73 (331)
453 3d8b_A Fidgetin-like protein 1 97.0 0.00036 1.2E-08 48.2 2.7 26 25-50 117-142 (357)
454 2bjv_A PSP operon transcriptio 97.0 0.00048 1.6E-08 45.3 3.2 26 25-50 29-54 (265)
455 3pvs_A Replication-associated 97.0 0.00028 9.5E-09 50.4 2.2 26 27-52 52-77 (447)
456 2z43_A DNA repair and recombin 97.0 0.00039 1.3E-08 47.4 2.7 25 25-49 107-131 (324)
457 2qby_B CDC6 homolog 3, cell di 97.0 0.00041 1.4E-08 47.6 2.9 25 25-49 45-69 (384)
458 3co5_A Putative two-component 97.0 0.00021 7E-09 43.1 1.1 25 25-49 27-51 (143)
459 2qp9_X Vacuolar protein sortin 97.0 0.00043 1.5E-08 47.8 2.9 25 26-50 85-109 (355)
460 3tmk_A Thymidylate kinase; pho 97.0 0.00047 1.6E-08 44.7 2.9 27 25-51 5-31 (216)
461 1hqc_A RUVB; extended AAA-ATPa 97.0 0.00046 1.6E-08 46.4 2.9 25 26-50 39-63 (324)
462 3pxg_A Negative regulator of g 97.0 0.00039 1.3E-08 49.7 2.6 25 25-49 201-225 (468)
463 3pih_A Uvrabc system protein A 96.9 0.00049 1.7E-08 53.1 3.2 37 4-42 2-41 (916)
464 4djt_A GTP-binding nuclear pro 96.9 8.5E-05 2.9E-09 47.3 -0.8 22 27-48 13-34 (218)
465 1g41_A Heat shock protein HSLU 96.9 0.00052 1.8E-08 49.0 3.1 28 25-52 50-77 (444)
466 3tqf_A HPR(Ser) kinase; transf 96.9 0.00045 1.5E-08 43.6 2.5 26 22-47 13-38 (181)
467 1g8p_A Magnesium-chelatase 38 96.9 0.00034 1.1E-08 47.5 2.0 25 26-50 46-70 (350)
468 3ld9_A DTMP kinase, thymidylat 96.9 0.00043 1.5E-08 45.1 2.4 27 25-51 21-47 (223)
469 3eph_A TRNA isopentenyltransfe 96.9 0.00038 1.3E-08 49.2 2.2 25 26-50 3-27 (409)
470 2orw_A Thymidine kinase; TMTK, 96.9 0.00053 1.8E-08 43.2 2.6 24 25-48 3-27 (184)
471 1tue_A Replication protein E1; 96.9 0.00035 1.2E-08 45.3 1.7 24 27-50 60-83 (212)
472 4dcu_A GTP-binding protein ENG 96.9 0.00021 7.3E-09 50.8 0.8 24 25-48 23-46 (456)
473 3th5_A RAS-related C3 botulinu 95.9 0.00016 5.3E-09 45.6 0.0 22 27-48 32-53 (204)
474 4b4t_I 26S protease regulatory 96.9 0.00052 1.8E-08 48.9 2.5 26 26-51 217-242 (437)
475 3geh_A MNME, tRNA modification 96.9 0.00051 1.8E-08 49.2 2.5 23 27-49 226-248 (462)
476 2vf7_A UVRA2, excinuclease ABC 96.8 0.00058 2E-08 52.3 2.9 18 25-42 36-53 (842)
477 2zan_A Vacuolar protein sortin 96.8 0.00051 1.7E-08 48.8 2.4 24 26-49 168-191 (444)
478 2x2e_A Dynamin-1; nitration, h 96.8 0.00022 7.6E-09 49.1 0.5 25 25-49 31-55 (353)
479 1jr3_A DNA polymerase III subu 96.8 0.00061 2.1E-08 46.6 2.7 26 26-51 39-64 (373)
480 1wxq_A GTP-binding protein; st 96.8 0.00043 1.5E-08 48.7 2.0 22 28-49 3-24 (397)
481 2r6f_A Excinuclease ABC subuni 96.8 0.00069 2.3E-08 52.5 3.2 37 4-42 22-61 (972)
482 3l0i_B RAS-related protein RAB 96.8 0.00015 5.3E-09 45.5 -0.5 21 27-47 35-55 (199)
483 1puj_A YLQF, conserved hypothe 96.8 0.00053 1.8E-08 46.0 2.2 23 27-49 122-144 (282)
484 4b4t_H 26S protease regulatory 96.8 0.00047 1.6E-08 49.5 2.0 27 25-51 243-269 (467)
485 3gj0_A GTP-binding nuclear pro 96.8 0.00041 1.4E-08 44.2 1.5 22 27-48 17-39 (221)
486 1sxj_A Activator 1 95 kDa subu 96.7 0.00078 2.7E-08 48.7 2.8 25 26-50 78-102 (516)
487 4hlc_A DTMP kinase, thymidylat 96.7 0.00073 2.5E-08 43.3 2.4 25 26-50 3-27 (205)
488 3e1s_A Exodeoxyribonuclease V, 96.7 0.0008 2.7E-08 49.4 2.8 26 25-50 204-229 (574)
489 3vfd_A Spastin; ATPase, microt 96.7 0.00072 2.5E-08 47.1 2.4 25 26-50 149-173 (389)
490 2qen_A Walker-type ATPase; unk 96.7 0.00078 2.7E-08 45.4 2.5 24 25-48 31-54 (350)
491 1p5z_B DCK, deoxycytidine kina 96.7 0.00028 9.5E-09 46.6 0.2 25 25-49 24-48 (263)
492 2i1q_A DNA repair and recombin 96.7 0.00071 2.4E-08 45.9 2.2 24 25-48 98-121 (322)
493 1yrb_A ATP(GTP)binding protein 96.7 0.001 3.6E-08 43.4 2.9 26 25-50 14-39 (262)
494 2c9o_A RUVB-like 1; hexameric 96.7 0.00093 3.2E-08 47.6 2.8 25 26-50 64-88 (456)
495 1ko7_A HPR kinase/phosphatase; 96.7 0.001 3.5E-08 45.5 2.9 26 22-47 141-166 (314)
496 3r7w_A Gtpase1, GTP-binding pr 96.7 0.00068 2.3E-08 45.9 1.9 22 27-48 5-26 (307)
497 1sky_E F1-ATPase, F1-ATP synth 96.7 0.00071 2.4E-08 48.7 2.1 26 25-50 151-176 (473)
498 2fna_A Conserved hypothetical 96.7 0.00087 3E-08 45.2 2.4 24 26-49 31-54 (357)
499 2j37_W Signal recognition part 96.7 0.00087 3E-08 48.6 2.5 26 25-50 101-126 (504)
500 2qpt_A EH domain-containing pr 96.6 0.00075 2.6E-08 49.3 2.1 24 26-49 66-89 (550)
No 1
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.81 E-value=2.1e-19 Score=113.78 Aligned_cols=89 Identities=39% Similarity=0.591 Sum_probs=65.8
Q ss_pred CeeeEEEEeceeecC--CCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--Cceee
Q psy16868 1 MYIKQVIIHGFKSYK--EQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PRVVN 76 (109)
Q Consensus 1 M~i~~i~i~n~~~~~--~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 76 (109)
|+|.+|+++||++|. +.. + +|++++++|+||||||||||++||++++.+..+.........+++..+.. .+...
T Consensus 2 M~i~~l~i~nf~~~~~~~~~-~-~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (182)
T 3kta_A 2 PYIEKLELKGFKSYGNKKVV-I-PFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKY 79 (182)
T ss_dssp CEEEEEEEESBGGGCSSCEE-E-ECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSC
T ss_pred ceEEEEEEeCeEeecCccEE-E-ecCCCcEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCce
Confidence 789999999999994 443 5 78777999999999999999999999998876654323333344444322 11246
Q ss_pred EEEEEEEecCCCCCc
Q psy16868 77 AYVEIVFDNTDHRVP 91 (109)
Q Consensus 77 ~~i~~~fq~~~~~~~ 91 (109)
+.|.++||++...++
T Consensus 80 ~~v~~~f~~~~~~~~ 94 (182)
T 3kta_A 80 AEVAIYFNNEDRGFP 94 (182)
T ss_dssp EEEEEEEECTTCCSS
T ss_pred EEEEEEEeCCCcccc
Confidence 789999999876553
No 2
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=99.75 E-value=2.5e-18 Score=106.55 Aligned_cols=89 Identities=24% Similarity=0.405 Sum_probs=63.8
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|.+|+++||++|.+.. + +|++++++|+||||||||||++||.+++.+.... + .....+++..+. ....|.
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~~-r-~~~~~~~~~~~~----~~~~v~ 72 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI-K-DIKKDEFTKVGA----RDTYID 72 (149)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSCC-T-TSSCCCSCSTTC----CCEEEE
T ss_pred CEEEEEEEeCcccCcceE-E-EcCCCeEEEECCCCCCHHHHHHHHHHHHcCCccc-c-cCCHHHheecCC----CcEEEE
Confidence 999999999999998754 5 7888899999999999999999999988653111 1 111122333332 257888
Q ss_pred EEEecCCCCCceeEEEe
Q psy16868 81 IVFDNTDHRVPGFIRCR 97 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~~~ 97 (109)
+.|...+..+.+.++..
T Consensus 73 ~~f~~~~~~~~i~R~~~ 89 (149)
T 1f2t_A 73 LIFEKDGTKYRITRRFL 89 (149)
T ss_dssp EEEEETTEEEEEEEEEC
T ss_pred EEEEECCEEEEEEEEEc
Confidence 88877665566655543
No 3
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.73 E-value=1.8e-17 Score=113.67 Aligned_cols=94 Identities=31% Similarity=0.573 Sum_probs=62.6
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--CceeeEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PRVVNAY 78 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 78 (109)
|+|++|+++||++|.+...+ +|++++++|+||||||||||++||.+++....+.-.......+++..+.. .......
T Consensus 1 M~l~~L~i~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~ 79 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY 79 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred CeEeEEEEeCceeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEE
Confidence 89999999999999654436 78777999999999999999999999985433221101222334443331 2224688
Q ss_pred EEEEEecCCCCCceeEE
Q psy16868 79 VEIVFDNTDHRVPGFIR 95 (109)
Q Consensus 79 i~~~fq~~~~~~~~~~~ 95 (109)
|.++|+..+..+.+.++
T Consensus 80 v~~~f~~~~~~~~i~r~ 96 (322)
T 1e69_A 80 VELVFEENGEEITVARE 96 (322)
T ss_dssp EEEEEESSSCEEEEEEE
T ss_pred EEEEEEeCCeEEEEEEE
Confidence 99999887654444433
No 4
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=99.73 E-value=1.4e-17 Score=107.78 Aligned_cols=89 Identities=24% Similarity=0.426 Sum_probs=67.6
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|.+|++.||++|.+.. + +|++++++|+|||||||||+++||.+++.+... .+ .....+++..+.. .+.|.
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~~-~r-~~~~~~~i~~~~~----~~~v~ 72 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR-IK-DIKKDEFTKVGAR----DTYID 72 (203)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHTTSC-CT-TCCHHHHHTSCSS----CEEEE
T ss_pred CEEEEEEEECCcCccceE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCcc-cc-cccchhhhccCCC----cEEEE
Confidence 999999999999998754 6 788899999999999999999999999986422 11 1112345554432 67899
Q ss_pred EEEecCCCCCceeEEEe
Q psy16868 81 IVFDNTDHRVPGFIRCR 97 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~~~ 97 (109)
+.|+..+..+.+.++..
T Consensus 73 l~f~~~~~~~~i~R~~~ 89 (203)
T 3qks_A 73 LIFEKDGTKYRITRRFL 89 (203)
T ss_dssp EEEEETTEEEEEEEEEE
T ss_pred EEEEECCEEEEEEEEEE
Confidence 99998776676666554
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.70 E-value=3.6e-18 Score=118.80 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=62.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|++..++++++ |++++|+|||||||||||++|+|++.|+.|.+.+.+... .......+..++.
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i--~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI--FSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE--ESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC--cccccccchhhCC
Confidence 4889999 8898877777666 899999999999999999999999999999998665321 1111122233567
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+++||++
T Consensus 82 ig~vfQ~~ 89 (359)
T 3fvq_A 82 LGYLVQEG 89 (359)
T ss_dssp CEEECTTC
T ss_pred EEEEeCCC
Confidence 99999986
No 6
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.69 E-value=3e-17 Score=113.29 Aligned_cols=88 Identities=24% Similarity=0.436 Sum_probs=64.8
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|++.+|+++||++|.+.. + +|++++++|+||||||||||++||++++..... .. .....+++..+. ..+.|.
T Consensus 1 M~i~~l~l~nF~~~~~~~-i-~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~-~~-~~~~~~~~~~~~----~~~~v~ 72 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR-IK-DIKKDEFTKVGA----RDTYID 72 (339)
T ss_dssp CEEEEEEEEEETTEEEEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCC-CT-TCCHHHHBCTTC----SEEEEE
T ss_pred CeEEEEEEEcccCccCeE-E-cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc-cC-cCCHHHHhcCCC----CeEEEE
Confidence 899999999999998755 6 788899999999999999999999998875321 11 111233343333 267899
Q ss_pred EEEecCCCCCceeEEE
Q psy16868 81 IVFDNTDHRVPGFIRC 96 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~~ 96 (109)
+.|+.....+.+.++.
T Consensus 73 ~~~~~~~~~~~i~r~~ 88 (339)
T 3qkt_A 73 LIFEKDGTKYRITRRF 88 (339)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEEEECCEEEEEEEEE
Confidence 9998876666555544
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.69 E-value=1.2e-17 Score=116.89 Aligned_cols=77 Identities=25% Similarity=0.288 Sum_probs=61.3
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|....++++++ |++++|+|||||||||||++|+|++.|+.|.+.+.+... ... +..++.
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~----~~~--~~~~r~ 76 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM----NDT--PPAERG 76 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTC--CGGGSC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC----CCC--CHHHCC
Confidence 3889999 8898877777665 899999999999999999999999999999998655321 111 112456
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 77 ig~VfQ~~~ 85 (381)
T 3rlf_A 77 VGMVFQSYA 85 (381)
T ss_dssp EEEECTTCC
T ss_pred EEEEecCCc
Confidence 999999873
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.68 E-value=5.8e-18 Score=113.55 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=59.8
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.... .........++.|
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~--~~~~~~~~~~~~i 102 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK--AKDTNLNKVREEV 102 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS--STTCCHHHHHHHE
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC--CccccHHHHhCcE
Confidence 789999 7887766676665 8899999999999999999999999999999886553211 0111111123569
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 103 ~~v~Q~~~ 110 (263)
T 2olj_A 103 GMVFQRFN 110 (263)
T ss_dssp EEECSSCC
T ss_pred EEEeCCCc
Confidence 99999863
No 9
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.68 E-value=1.7e-17 Score=115.94 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=58.1
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|.+..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.+... ...+ ..++.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~--~~~r~ 84 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV----TYLP--PKDRN 84 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--GGGGT
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC----CCCC--hhhCc
Confidence 4889999 7898766666665 899999999999999999999999999999998655311 1111 12456
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+++||++
T Consensus 85 ig~v~Q~~ 92 (372)
T 1v43_A 85 ISMVFQSY 92 (372)
T ss_dssp EEEEEC--
T ss_pred EEEEecCc
Confidence 99999986
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.68 E-value=3.2e-18 Score=115.45 Aligned_cols=83 Identities=18% Similarity=0.328 Sum_probs=61.1
Q ss_pred EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
-|+++|+ +.|... .++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.... .........+.
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~--~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID--YSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC--CSHHHHHHHHH
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC--cccccHHHHhC
Confidence 4899999 788653 4677766 8999999999999999999999999999999886553211 00001112245
Q ss_pred EEEEEEecCCCC
Q psy16868 78 YVEIVFDNTDHR 89 (109)
Q Consensus 78 ~i~~~fq~~~~~ 89 (109)
.|+++||++...
T Consensus 85 ~ig~v~Q~~~~~ 96 (275)
T 3gfo_A 85 SIGIVFQDPDNQ 96 (275)
T ss_dssp SEEEECSSGGGT
T ss_pred cEEEEEcCcccc
Confidence 799999987543
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.67 E-value=5e-18 Score=113.44 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=59.7
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI---TNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC---TTCCHHHHHHHT
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---CCCCHHHHHhCC
Confidence 3889999 7898777777776 899999999999999999999999999999988555311 110000111346
Q ss_pred EEEEEecC
Q psy16868 79 VEIVFDNT 86 (109)
Q Consensus 79 i~~~fq~~ 86 (109)
|+++||++
T Consensus 84 i~~v~q~~ 91 (257)
T 1g6h_A 84 IVRTFQTP 91 (257)
T ss_dssp EEECCCCC
T ss_pred EEEEccCC
Confidence 99999986
No 12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.67 E-value=1.7e-17 Score=111.41 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=62.4
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+.
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~~~~~~~~~~ 86 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL----NSWQPKALART 86 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEET----TTSCHHHHHHH
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC----CcCCHHHHhhe
Confidence 4889999 7888877777766 899999999999999999999999999999988655311 11111122345
Q ss_pred EEEEEecCCCCC
Q psy16868 79 VEIVFDNTDHRV 90 (109)
Q Consensus 79 i~~~fq~~~~~~ 90 (109)
++++||++...+
T Consensus 87 i~~v~q~~~~~~ 98 (266)
T 4g1u_C 87 RAVMRQYSELAF 98 (266)
T ss_dssp EEEECSCCCCCS
T ss_pred EEEEecCCccCC
Confidence 899999875433
No 13
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.67 E-value=3.8e-18 Score=111.96 Aligned_cols=79 Identities=14% Similarity=0.244 Sum_probs=59.2
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc---ee
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR---VV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~ 75 (109)
-|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... ...... ..
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~ 79 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV----DYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC----CSSCHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----CCCCHHHHHHH
Confidence 4889999 7887766677665 899999999999999999999999999999988554211 111100 11
Q ss_pred -eEEEEEEEecCC
Q psy16868 76 -NAYVEIVFDNTD 87 (109)
Q Consensus 76 -~~~i~~~fq~~~ 87 (109)
...|+++||++.
T Consensus 80 ~~~~i~~v~q~~~ 92 (224)
T 2pcj_A 80 RNRKLGFVFQFHY 92 (224)
T ss_dssp HHHHEEEECSSCC
T ss_pred HhCcEEEEecCcc
Confidence 246999999863
No 14
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.67 E-value=3e-17 Score=107.16 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=59.5
Q ss_pred eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
..|+++|+ +.|++ .++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.... . .+.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------~---~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------K---VKG 78 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------G---GGG
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------h---hcC
Confidence 35889999 78877 7677665 8999999999999999999999999999999886553211 1 245
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 79 ~i~~v~q~~~ 88 (214)
T 1sgw_A 79 KIFFLPEEII 88 (214)
T ss_dssp GEEEECSSCC
T ss_pred cEEEEeCCCc
Confidence 6999999864
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.66 E-value=3.3e-17 Score=114.48 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=60.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|++..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.+............+..++.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 4889999 7897766676665 899999999999999999999999999999998655321100000001112456
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 83 ig~v~Q~~~ 91 (372)
T 1g29_1 83 IAMVFQSYA 91 (372)
T ss_dssp EEEECSCCC
T ss_pred EEEEeCCCc
Confidence 999999863
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.66 E-value=1.2e-17 Score=110.53 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=59.0
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|....++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .........+..
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI---TNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC---TTCCHHHHHHTT
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC---CCCCHHHHHhCC
Confidence 3889999 7887766676665 899999999999999999999999999999988554311 110000011234
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 83 i~~v~q~~~ 91 (240)
T 1ji0_A 83 IALVPEGRR 91 (240)
T ss_dssp EEEECSSCC
T ss_pred EEEEecCCc
Confidence 999999863
No 17
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.66 E-value=3.3e-18 Score=113.02 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=56.0
Q ss_pred EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc--
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR-- 73 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (109)
|+++|+ +.|.. ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... ......
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT----NDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----TTCCHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEc----ccCCHHHH
Confidence 577787 67753 23566655 899999999999999999999999999999988554311 111100
Q ss_pred --eeeEEEEEEEecCC
Q psy16868 74 --VVNAYVEIVFDNTD 87 (109)
Q Consensus 74 --~~~~~i~~~fq~~~ 87 (109)
..+..|+++||++.
T Consensus 78 ~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFN 93 (235)
T ss_dssp HHHHHHHEEEECTTCC
T ss_pred HHHhhccEEEEecCCc
Confidence 11245999999874
No 18
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.66 E-value=1e-16 Score=111.84 Aligned_cols=84 Identities=27% Similarity=0.471 Sum_probs=62.5
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|++.+|+++||++|.+.. + +|++++++|+|+||||||||++||++++.+.... ....+++..+.. .+.|.
T Consensus 3 M~l~~L~l~nFr~~~~~~-i-~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~r~----~~~~~~ir~g~~----~~~V~ 72 (371)
T 3auy_A 3 MILKEIRMNNFKSHVNSR-I-KFEKGIVAIIGENGSGKSSIFEAVFFALFGAGSN----FNYDTIITKGKK----SVYVE 72 (371)
T ss_dssp EEEEEEEEEEETTEEEEE-E-ECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-C----CCTTTTBCTTCS----EEEEE
T ss_pred cEEeEEEEEccccccceE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCc----cchHhhccCCCC----cEEEE
Confidence 668899999999997654 6 8888999999999999999999999977655211 112335555433 67889
Q ss_pred EEEecCCCCCceeE
Q psy16868 81 IVFDNTDHRVPGFI 94 (109)
Q Consensus 81 ~~fq~~~~~~~~~~ 94 (109)
++|...+..+.+.+
T Consensus 73 ~~f~~~~~~~~i~r 86 (371)
T 3auy_A 73 LDFEVNGNNYKIIR 86 (371)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEEEE
Confidence 99987655555544
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.65 E-value=5.2e-17 Score=113.03 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=59.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|++..++++++ |++++|+|||||||||||++|+|++.|+.|.+.+.+... .... ..++.|
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~--~~~r~i 77 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV----NDIP--PKYREV 77 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--GGGTTE
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC----CCCC--hhhCcE
Confidence 788998 7887766666665 899999999999999999999999999999998655311 1111 123569
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 78 g~v~Q~~~ 85 (359)
T 2yyz_A 78 GMVFQNYA 85 (359)
T ss_dssp EEECSSCC
T ss_pred EEEecCcc
Confidence 99999863
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.65 E-value=6.3e-17 Score=112.71 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=59.4
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|++..++++++ |++++|+|||||||||||++|+|++.|+.|.+.+.+... .... ..++.|
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~--~~~r~i 77 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV----TELP--PKDRNV 77 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--GGGTTE
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC----CcCC--HhHCcE
Confidence 788999 7888766676665 899999999999999999999999999999988655311 1111 123569
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 78 g~v~Q~~~ 85 (362)
T 2it1_A 78 GLVFQNWA 85 (362)
T ss_dssp EEECTTCC
T ss_pred EEEecCcc
Confidence 99999863
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.65 E-value=2.5e-17 Score=110.05 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=59.6
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... .. .....+..
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~---~~--~~~~~~~~ 89 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV---VE--EPHEVRKL 89 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEET---TT--CHHHHHTT
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC---Cc--cHHHHhhc
Confidence 4788998 7887766676665 889999999999999999999999999999988555311 11 11112346
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 90 i~~v~q~~~ 98 (256)
T 1vpl_A 90 ISYLPEEAG 98 (256)
T ss_dssp EEEECTTCC
T ss_pred EEEEcCCCC
Confidence 999999864
No 22
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.65 E-value=6.4e-16 Score=109.49 Aligned_cols=93 Identities=32% Similarity=0.423 Sum_probs=59.2
Q ss_pred CeeeEEEEeceeecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC-------
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP------- 72 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~------- 72 (109)
|+|.+|++.||++|.+...+ ++. +++++|+||||||||||++||++++.+.+...+ .....+++..+...
T Consensus 2 m~i~~l~~~~~~~~~~~~~~-~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~~R-~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 2 GRLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLR-SNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp CCEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CeeEEEEEeCEEEECCceeE-EecCCCEEEEECCCCCCHHHHHHHHHhhhccccccch-hhhHHHHHhcCCccceeeEEe
Confidence 78999999999989765435 565 689999999999999999999999987654333 22234455544310
Q ss_pred --------ceeeEEEEEEEecCCCCCceeEE
Q psy16868 73 --------RVVNAYVEIVFDNTDHRVPGFIR 95 (109)
Q Consensus 73 --------~~~~~~i~~~fq~~~~~~~~~~~ 95 (109)
.+....|...|+.....+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~i~r~ 110 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQKGNKLVELMRI 110 (430)
T ss_dssp ---------CCEEEEEEEEEETTEEEEEEEE
T ss_pred cccccccCCcccccceeeeccCCcEEEEEEE
Confidence 01246677777654433344333
No 23
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.64 E-value=6.2e-17 Score=112.50 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=59.5
Q ss_pred EEEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ +.| ++..++++++ |++++|+|||||||||||++|+|++.|..|.+.+.+... . .. +..++
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i---~-~~--~~~~r 87 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV---T-DL--PPQKR 87 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC---T-TC--CGGGS
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC---C-cC--ChhhC
Confidence 4788999 788 6655566665 899999999999999999999999999999988655311 1 11 12246
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 88 ~ig~v~Q~~~ 97 (355)
T 1z47_A 88 NVGLVFQNYA 97 (355)
T ss_dssp SEEEECGGGC
T ss_pred cEEEEecCcc
Confidence 7999999863
No 24
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.64 E-value=3e-17 Score=114.07 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=59.7
Q ss_pred EEEece-eecCCCe--eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYKEQT--VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~~~--~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
|+++|+ +.|++.. ++++++ |++++|+|||||||||||++|+|++.|..|.+.+.+...... .....+..++
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-~~~~~~~~~r 82 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN-GKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEET-TEESSCGGGS
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccc-ccccCChhhC
Confidence 788888 7887665 676665 899999999999999999999999999999988655321100 0000122246
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 83 ~ig~v~Q~~~ 92 (353)
T 1oxx_K 83 KIGMVFQTWA 92 (353)
T ss_dssp CEEEEETTSC
T ss_pred CEEEEeCCCc
Confidence 7999999863
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.64 E-value=4.6e-17 Score=108.24 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=59.2
Q ss_pred EEEEece-eec--CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSY--KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~--~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ +.| ....++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... ........+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~----~~~~~~~~~ 82 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL----ALADPNWLR 82 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET----TTSCHHHHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh----hhCCHHHHH
Confidence 5788999 788 3455676665 899999999999999999999999999999988654311 111111224
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|+++||++.
T Consensus 83 ~~i~~v~Q~~~ 93 (247)
T 2ff7_A 83 RQVGVVLQDNV 93 (247)
T ss_dssp HHEEEECSSCC
T ss_pred hcEEEEeCCCc
Confidence 56999999864
No 26
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.64 E-value=1.4e-17 Score=111.54 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=48.3
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 67 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 67 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 889999 7887766676665 899999999999999999999999999999988655
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.63 E-value=4.5e-17 Score=107.99 Aligned_cols=78 Identities=10% Similarity=0.182 Sum_probs=57.1
Q ss_pred EEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 6 VIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 6 i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
|+++|+ +.| .+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... ........+..
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~ 77 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI----DNISLENWRSQ 77 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES----TTTSCSCCTTT
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh----hhCCHHHHHhh
Confidence 677888 678 4455566555 889999999999999999999999999999988655311 11111122456
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 78 i~~v~q~~~ 86 (243)
T 1mv5_A 78 IGFVSQDSA 86 (243)
T ss_dssp CCEECCSSC
T ss_pred EEEEcCCCc
Confidence 899999863
No 28
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.63 E-value=3.2e-17 Score=110.73 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=59.5
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
-|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... ..........++.
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~--~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP--GKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC--C---CCHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc--ccccCCHHHHcCc
Confidence 3788999 7887766677665 899999999999999999999999999999988554311 0001111112356
Q ss_pred EEEEEecCC
Q psy16868 79 VEIVFDNTD 87 (109)
Q Consensus 79 i~~~fq~~~ 87 (109)
|+++||++.
T Consensus 99 i~~v~Q~~~ 107 (279)
T 2ihy_A 99 IGFVSHSLL 107 (279)
T ss_dssp EEEECHHHH
T ss_pred EEEEEcCcc
Confidence 999999854
No 29
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.62 E-value=3.7e-17 Score=113.90 Aligned_cols=81 Identities=12% Similarity=0.245 Sum_probs=58.1
Q ss_pred EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
|+++|+ +.|.. ..++++++ |++++|+||||||||||+++|+|++.|+.|.+.+.+...... ........
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~-~~~~~~~~ 103 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL-SESELTKA 103 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSC-CHHHHHHH
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHHHHH
Confidence 788898 77853 24566665 899999999999999999999999999999988655311100 00001112
Q ss_pred eEEEEEEEecCC
Q psy16868 76 NAYVEIVFDNTD 87 (109)
Q Consensus 76 ~~~i~~~fq~~~ 87 (109)
++.|+++||++.
T Consensus 104 r~~Ig~v~Q~~~ 115 (366)
T 3tui_C 104 RRQIGMIFQHFN 115 (366)
T ss_dssp HTTEEEECSSCC
T ss_pred hCcEEEEeCCCc
Confidence 356999999874
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.62 E-value=6.1e-17 Score=108.94 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=58.1
Q ss_pred EEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 6 VIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 6 i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
|+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+... . .......+
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i---~-~~~~~~~~ 92 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPL---V-QYDHHYLH 92 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG---G-GBCHHHHH
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEc---c-cCCHHHHh
Confidence 788898 77865 45566655 889999999999999999999999999999988655311 1 11111224
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|+++||++.
T Consensus 93 ~~i~~v~Q~~~ 103 (271)
T 2ixe_A 93 TQVAAVGQEPL 103 (271)
T ss_dssp HHEEEECSSCC
T ss_pred ccEEEEecCCc
Confidence 56999999863
No 31
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.61 E-value=9.5e-17 Score=111.32 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=58.1
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV 79 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (109)
|+++|+ +.|++. ++++++ |++++|+|||||||||||++|+|++.|..|.+.+.+... . . .+..++.|
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i---~-~--~~~~~r~i 74 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV---T-D--LSPEKHDI 74 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC---T-T--SCHHHHTC
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEEC---C-C--CchhhCcE
Confidence 678888 788766 676665 899999999999999999999999999999988655311 1 1 12224569
Q ss_pred EEEEecCC
Q psy16868 80 EIVFDNTD 87 (109)
Q Consensus 80 ~~~fq~~~ 87 (109)
+++||++.
T Consensus 75 g~v~Q~~~ 82 (348)
T 3d31_A 75 AFVYQNYS 82 (348)
T ss_dssp EEECTTCC
T ss_pred EEEecCcc
Confidence 99999863
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.61 E-value=2.3e-16 Score=104.26 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=53.0
Q ss_pred EEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
|+++|+ +.|. +..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----------------- 66 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----------------- 66 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----------------
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----------------
Confidence 788888 7786 344566655 899999999999999999999999999999987332
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 67 ~i~~v~Q~~~ 76 (237)
T 2cbz_A 67 SVAYVPQQAW 76 (237)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEcCCCc
Confidence 2888888763
No 33
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.61 E-value=5e-16 Score=103.58 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=55.4
Q ss_pred EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
-|+++|+ +.|. +..++++++ |++++|+||||||||||+++|+|++.|..|.+. .+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-----------------~~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-----------------VYQ 66 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----------------ECS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----------------Eec
Confidence 3889999 7887 666677665 899999999999999999999999999999864 124
Q ss_pred EEEEEEecCCC
Q psy16868 78 YVEIVFDNTDH 88 (109)
Q Consensus 78 ~i~~~fq~~~~ 88 (109)
.|+++||++..
T Consensus 67 ~i~~v~q~~~~ 77 (253)
T 2nq2_C 67 SIGFVPQFFSS 77 (253)
T ss_dssp CEEEECSCCCC
T ss_pred cEEEEcCCCcc
Confidence 58999998643
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.60 E-value=3.9e-16 Score=102.70 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=54.0
Q ss_pred eEEEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 4 KQVIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 4 ~~i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
..|+++|+ +.|. +..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 35889999 7784 344566665 899999999999999999999999999999987332
Q ss_pred eEEEEEEEecCC
Q psy16868 76 NAYVEIVFDNTD 87 (109)
Q Consensus 76 ~~~i~~~fq~~~ 87 (109)
.|++++|++.
T Consensus 70 --~i~~v~q~~~ 79 (229)
T 2pze_A 70 --RISFCSQFSW 79 (229)
T ss_dssp --CEEEECSSCC
T ss_pred --EEEEEecCCc
Confidence 3788888763
No 35
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.60 E-value=1.8e-16 Score=106.42 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=56.2
Q ss_pred EEEece-eecC--C---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868 6 VIIHGF-KSYK--E---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV 74 (109)
Q Consensus 6 i~i~n~-~~~~--~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (109)
|+++|+ +.|. . ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+.... .. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~--~~-----~ 75 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK--GY-----E 75 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECC--HH-----H
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECc--hH-----H
Confidence 678888 7786 3 34566665 8999999999999999999999999999999885543110 00 1
Q ss_pred eeEEEEEEEecC
Q psy16868 75 VNAYVEIVFDNT 86 (109)
Q Consensus 75 ~~~~i~~~fq~~ 86 (109)
.+..|+++||++
T Consensus 76 ~~~~i~~v~q~~ 87 (266)
T 2yz2_A 76 IRRNIGIAFQYP 87 (266)
T ss_dssp HGGGEEEECSSG
T ss_pred hhhhEEEEeccc
Confidence 234699999985
No 36
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.60 E-value=1.6e-16 Score=106.74 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=56.7
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|++ .|..|.+.+.+... .........+.
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i---~~~~~~~~~~~ 97 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL---LALSPEDRAGE 97 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG---GGSCHHHHHHH
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC---CcCCHHHHhhC
Confidence 788898 7887766676665 8999999999999999999999994 57889887555311 11000001123
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 98 ~i~~v~Q~~~ 107 (267)
T 2zu0_C 98 GIFMAFQYPV 107 (267)
T ss_dssp TEEEECSSCC
T ss_pred CEEEEccCcc
Confidence 4899999874
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.59 E-value=5.5e-17 Score=107.98 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=56.5
Q ss_pred EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHh--hccCcccccccchhhhhhhcCCCCc-eee
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFV--LSDESTSLRHSDSRQALLHEGTGPR-VVN 76 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~--l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (109)
|+++|+ +.|.+..++++++ |++++|+||||||||||+++|+|+ +.|..|.+.+.+... . ..... ..+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~---~-~~~~~~~~~ 79 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI---L-ELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEC---T-TSCHHHHHH
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEEC---C-CCCHHHHHh
Confidence 788898 7887766677665 899999999999999999999998 678889988554311 0 11100 012
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..++++||++.
T Consensus 80 ~~i~~v~q~~~ 90 (250)
T 2d2e_A 80 KGLFLAFQYPV 90 (250)
T ss_dssp TTBCCCCCCCC
T ss_pred CcEEEeccCCc
Confidence 34788888764
No 38
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.59 E-value=2.7e-15 Score=104.60 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=61.3
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|++.++++.||++|.+.. + +|+.++++|+||||||||||++||++++++...... .. .+...... ......|.
T Consensus 1 M~~~~l~~~~f~~~~~~~-i-~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~-~~--~~~~~~~~--~~~~~~v~ 73 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVD-I-EFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYP-NS--YDYVNRNA--VDGTARLV 73 (365)
T ss_dssp CEEEEEEEEEETTEEEEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCS-SG--GGGBCTTC--TTCEEEEE
T ss_pred CeeEEEEEeCccCccceE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccc-Cc--chhhhccC--CCCcEEEE
Confidence 899999999999998765 5 777679999999999999999999999986533211 11 11111111 11256777
Q ss_pred EEEecCCCCCceeEE
Q psy16868 81 IVFDNTDHRVPGFIR 95 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~ 95 (109)
+.|......+.+.+.
T Consensus 74 ~~f~~~g~~y~v~R~ 88 (365)
T 3qf7_A 74 FQFERGGKRYEIIRE 88 (365)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEECCEEEEEEEE
Confidence 888776655555543
No 39
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.59 E-value=1.3e-16 Score=109.03 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=59.9
Q ss_pred EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ ..|. ...++++++ |++++|+||||||||||+++|++++.|..|.+.+++... ........+.
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i----~~~~~~~~r~ 128 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI----SQVTQASLRS 128 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET----TSBCHHHHHH
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc----ccCCHHHHhc
Confidence 4788998 7885 345676665 899999999999999999999999999999988655311 1112222356
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|+++||++.
T Consensus 129 ~i~~v~Q~~~ 138 (306)
T 3nh6_A 129 HIGVVPQDTV 138 (306)
T ss_dssp TEEEECSSCC
T ss_pred ceEEEecCCc
Confidence 7999999863
No 40
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.58 E-value=5.2e-15 Score=102.98 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=62.2
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|++|++.||++|.+.. + .++.++++|+||||||||||++||+++..+. -. .....+++..+.. ...|.
T Consensus 4 M~i~~L~l~~~~~~~~~~-~-~~~~g~~~i~G~nG~GKttll~ai~~~~~g~-~R---~~~~~~lI~~g~~----~~~V~ 73 (359)
T 2o5v_A 4 VRLSALSTLNYRNLAPGT-L-NFPEGVTGIYGENGAGKTNLLEAAYLALTGQ-TD---APRIEQLIQAGET----EAYVR 73 (359)
T ss_dssp CCEEEEEEESBTTCCSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHSC-CC---CSSGGGGBCTTCS----CEEEE
T ss_pred cEEeEEEEeCccceeeeE-E-EEcCCeEEEECCCCCChhHHHHHHHHhccCC-CC---CCCHHHHhccCCC----cEEEE
Confidence 789999999999997655 5 7776799999999999999999999988654 22 2224445655544 47777
Q ss_pred EEEecCCCCCceeEE
Q psy16868 81 IVFDNTDHRVPGFIR 95 (109)
Q Consensus 81 ~~fq~~~~~~~~~~~ 95 (109)
..|+.....+.+.+.
T Consensus 74 ~~~~~~~~~~~i~~~ 88 (359)
T 2o5v_A 74 ADLQQGGSLSIQEVG 88 (359)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEecCCceEEEEEE
Confidence 777765544444443
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.58 E-value=2.8e-16 Score=110.36 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=58.1
Q ss_pred EEEEece-eec--CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSY--KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~--~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ +.| ....++++++ |++++|+|||||||||||++|+|++. ..|.+.+.+... ........+
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i----~~~~~~~~r 93 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSW----DSITLEQWR 93 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBT----TSSCHHHHH
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEEC----CcCChHHHh
Confidence 4889999 788 4455666665 89999999999999999999999998 789888555311 111212224
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
+.|+++||++.
T Consensus 94 r~ig~v~Q~~~ 104 (390)
T 3gd7_A 94 KAFGVIPQKVF 104 (390)
T ss_dssp HTEEEESCCCC
T ss_pred CCEEEEcCCcc
Confidence 56999999863
No 42
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.57 E-value=2.4e-15 Score=108.74 Aligned_cols=83 Identities=16% Similarity=0.239 Sum_probs=60.1
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+|.+|+++||+.|.+.. + +|++++++|+|+|||||||||+||++++..... .+++..+.. .+.|.
T Consensus 38 M~l~~L~i~nf~~~~~~~-l-~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~--------~~~i~~g~~----~a~v~ 103 (517)
T 4ad8_A 38 PRLSRLEIRNLATITQLE-L-ELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIRSGEK----ELLVT 103 (517)
T ss_dssp CCCCEEEEESBTTBSCEE-E-ECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC--------GGGBCTTCS----EEEEE
T ss_pred ceeeeeecccccceeeEE-E-ecCCCeEEEEcCCCCCHHHHHHHHHHHhcCCcH--------HHHhcCCCC----cEEEE
Confidence 789999999999998766 6 788789999999999999999999999986432 224555544 67888
Q ss_pred EEE-ecC-CCCCceeEEEe
Q psy16868 81 IVF-DNT-DHRVPGFIRCR 97 (109)
Q Consensus 81 ~~f-q~~-~~~~~~~~~~~ 97 (109)
.+| ... +..+.+.+...
T Consensus 104 ~~f~~~~~~~~~~i~r~~~ 122 (517)
T 4ad8_A 104 GFWGDGDESEADSASRRLS 122 (517)
T ss_dssp EEC--------CEEEEEEE
T ss_pred EEEEecCCCCeEEEEEEEe
Confidence 888 654 33444444433
No 43
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.55 E-value=5.7e-16 Score=103.66 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=55.4
Q ss_pred EEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 6 VIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 6 i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
|+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++.+ .|.+.+.+... . .......+
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i---~-~~~~~~~~ 92 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNV---N-KYNRNSIR 92 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEG---G-GBCHHHHH
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEh---h-hcCHHHHh
Confidence 788888 77865 23566555 899999999999999999999999986 79887554311 1 11111124
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|+++||++.
T Consensus 93 ~~i~~v~Q~~~ 103 (260)
T 2ghi_A 93 SIIGIVPQDTI 103 (260)
T ss_dssp TTEEEECSSCC
T ss_pred ccEEEEcCCCc
Confidence 56999999863
No 44
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.52 E-value=1.7e-15 Score=100.30 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=53.0
Q ss_pred EEEece-eecCCCeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+++|+ +.|+.. +++++ .++++|+||||||||||+++|+|++.|..|.+.+.+... .. . ...+..|+
T Consensus 2 l~~~~l~~~y~~~--l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~-~--~~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGNF--RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI---TP-L--PPERRGIG 73 (240)
T ss_dssp CEEEEEEEEETTE--EEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC---TT-S--CTTTSCCB
T ss_pred EEEEEEEEEeCCE--EeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---Cc-C--chhhCcEE
Confidence 567777 667542 44433 489999999999999999999999999999988655311 11 1 11135689
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
++||++.
T Consensus 74 ~v~q~~~ 80 (240)
T 2onk_A 74 FVPQDYA 80 (240)
T ss_dssp CCCSSCC
T ss_pred EEcCCCc
Confidence 9999863
No 45
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.51 E-value=4.3e-16 Score=102.48 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=46.0
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|++..|++.||..|.... + +|+.++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus 5 ~k~~~l~l~~~~~~~~~~-~-~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFART-F-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp CEEEEEEEEEETTEEEEE-E-CHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred ceeeEEEEEeeecccCCE-E-EEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 889999999995543333 4 555678999999999999999999999999999887554
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.51 E-value=2.5e-15 Score=100.74 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=54.4
Q ss_pred EEEece-eecCC----CeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 6 VIIHGF-KSYKE----QTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 6 i~i~n~-~~~~~----~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
|+++|+ +.|.+ ..++++++ |++++|+||||||||||+++|+|++ |..|.+.+.+... ... .. +
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~---~~~---~~-~ 73 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEV---RKI---RN-Y 73 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEG---GGC---SC-C
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEEC---cch---HH-h
Confidence 567777 66754 44454443 7899999999999999999999999 9999988655321 111 11 4
Q ss_pred EEEE-EEEecCCC
Q psy16868 77 AYVE-IVFDNTDH 88 (109)
Q Consensus 77 ~~i~-~~fq~~~~ 88 (109)
..|+ ++||++..
T Consensus 74 ~~i~~~v~Q~~~l 86 (263)
T 2pjz_A 74 IRYSTNLPEAYEI 86 (263)
T ss_dssp TTEEECCGGGSCT
T ss_pred hheEEEeCCCCcc
Confidence 5688 99998753
No 47
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.50 E-value=1.6e-15 Score=100.92 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=52.3
Q ss_pred EEEeceeecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 6 VIIHGFKSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 6 i~i~n~~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
++++|+... .++++++ |++++|+||||||||||+++|+|++.|. |.+.+.+... .. ......+..|+
T Consensus 5 l~~~~l~~~---~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~---~~-~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES---TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPL---EA-WSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET---TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEG---GG-SCHHHHHHHEE
T ss_pred EEEEceEEE---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEEC---Cc-CCHHHHhceEE
Confidence 677777221 2354444 8899999999999999999999999999 9988655311 11 11112235699
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
++||++.
T Consensus 77 ~v~q~~~ 83 (249)
T 2qi9_C 77 YLSQQQT 83 (249)
T ss_dssp EECSCCC
T ss_pred EECCCCc
Confidence 9999874
No 48
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.50 E-value=7.8e-15 Score=107.40 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=59.8
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ ..|.+ ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+++... ...+....+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~----~~~~~~~~~ 416 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV----RDYKLTNLR 416 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh----hhCCHHHHh
Confidence 4788898 78864 44566665 899999999999999999999999999999988655321 111122235
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 417 ~~i~~v~Q~~~ 427 (582)
T 3b5x_A 417 RHFALVSQNVH 427 (582)
T ss_pred cCeEEEcCCCc
Confidence 67999999863
No 49
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.48 E-value=2.8e-14 Score=100.26 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=53.0
Q ss_pred CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|++..|++.||+.+.+.. + .+++++++|+|||||||||||+||++++.+..+. +++..+.. ...|.
T Consensus 38 m~l~~L~i~nf~~l~~v~-l-~~~~G~~~lvG~NGaGKStLl~aI~~l~~~~~~~--------~~i~~g~~----~~~v~ 103 (415)
T 4aby_A 38 PRLSRLEIRNLATITQLE-L-ELGGGFCAFTGETGAGKSIIVDALGLLLGGRANH--------DLIRSGEK----ELLVT 103 (415)
T ss_dssp CCCCEEEEEEETTEEEEE-E-ECCSSEEEEEESHHHHHHHHTHHHHHHTTCCCCG--------GGBCTTCS----EEEEE
T ss_pred cEeeeehhccccceeeEE-E-ecCCCcEEEECCCCCCHHHHHHHHHHHhCCCccH--------HHhcCCCC----eEEEE
Confidence 778899999998887666 5 6665599999999999999999999999875432 23444433 56666
Q ss_pred EEE
Q psy16868 81 IVF 83 (109)
Q Consensus 81 ~~f 83 (109)
..|
T Consensus 104 ~~~ 106 (415)
T 4aby_A 104 GFW 106 (415)
T ss_dssp EEC
T ss_pred EEE
Confidence 666
No 50
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.47 E-value=9.7e-15 Score=99.08 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=43.9
Q ss_pred EEEeceeecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868 6 VIIHGFKSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE 80 (109)
Q Consensus 6 i~i~n~~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (109)
|+++|+.. ....++++++ |++++|+||||||||||+++|+|++.|..|.+.+.+ .|+
T Consensus 41 l~~~~l~~-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----------------~i~ 102 (290)
T 2bbs_A 41 LSFSNFSL-LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------------RIS 102 (290)
T ss_dssp ----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------------CEE
T ss_pred EEEEEEEE-cCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------------EEE
Confidence 56667621 1233455554 899999999999999999999999999999987322 388
Q ss_pred EEEecCC
Q psy16868 81 IVFDNTD 87 (109)
Q Consensus 81 ~~fq~~~ 87 (109)
++||++.
T Consensus 103 ~v~Q~~~ 109 (290)
T 2bbs_A 103 FCSQNSW 109 (290)
T ss_dssp EECSSCC
T ss_pred EEeCCCc
Confidence 8888763
No 51
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.47 E-value=8.6e-15 Score=107.18 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=59.1
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ ..|.+ ..++++++ |+.++|+||||||||||+++|+|++.|..|.+.+++... ...+....+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~----~~~~~~~~~ 416 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL----REYTLASLR 416 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET----TTBCHHHHH
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEc----cccCHHHHH
Confidence 3788898 77863 44566665 899999999999999999999999999999988655311 111112234
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 417 ~~i~~v~Q~~~ 427 (582)
T 3b60_A 417 NQVALVSQNVH 427 (582)
T ss_dssp HTEEEECSSCC
T ss_pred hhCeEEccCCc
Confidence 56999999874
No 52
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.46 E-value=1.4e-14 Score=106.37 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=58.9
Q ss_pred EEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 6 VIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 6 i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
|+++|+ ..|.+ ..++++++ |+.++|+||||||||||+++|+|++.|..|.+.+++... ........+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i----~~~~~~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI----RQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEET----TTBCHHHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEh----hhCCHHHHH
Confidence 889998 78864 24676665 899999999999999999999999999999988655311 111112234
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 418 ~~i~~v~Q~~~ 428 (595)
T 2yl4_A 418 SKIGTVSQEPI 428 (595)
T ss_dssp HSEEEECSSCC
T ss_pred hceEEEccCCc
Confidence 56999999874
No 53
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.44 E-value=1.1e-14 Score=107.02 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=58.9
Q ss_pred EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868 5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA 77 (109)
Q Consensus 5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (109)
.|+++|+ ..|.+ ..++++++ |+.++|+||||||||||+++|+|++.|..|.+.+++... ........+.
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i----~~~~~~~~r~ 429 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI----RKIKRSSLRS 429 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG----GGSCHHHHHH
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEh----hhCCHHHHHh
Confidence 4788898 67854 33455554 899999999999999999999999999999988655321 1112222356
Q ss_pred EEEEEEecCC
Q psy16868 78 YVEIVFDNTD 87 (109)
Q Consensus 78 ~i~~~fq~~~ 87 (109)
.|++++|++.
T Consensus 430 ~i~~v~Q~~~ 439 (598)
T 3qf4_B 430 SIGIVLQDTI 439 (598)
T ss_dssp HEEEECTTCC
T ss_pred ceEEEeCCCc
Confidence 7999999873
No 54
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.43 E-value=9.1e-15 Score=107.00 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=59.3
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.++++|+ ..|.+ ..++++++ |+.++|+||||||||||+++|.|++.|..|.+.+++... ........+
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~----~~~~~~~~r 414 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI----KDFLTGSLR 414 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG----GGSCHHHHH
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh----hhCCHHHHh
Confidence 4788898 77854 34566665 899999999999999999999999999999988655321 111222235
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 415 ~~i~~v~Q~~~ 425 (578)
T 4a82_A 415 NQIGLVQQDNI 425 (578)
T ss_dssp HTEEEECSSCC
T ss_pred hheEEEeCCCc
Confidence 57999999863
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.43 E-value=1.1e-14 Score=106.73 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=59.4
Q ss_pred EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868 5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN 76 (109)
Q Consensus 5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (109)
.|+++|+ ..|.+ ..++++++ |+.++|+||||||||||+++|.+++.|..|.+.+++... ...+....+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i----~~~~~~~~r 416 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV----RTVKLKDLR 416 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG----GGBCHHHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc----ccCCHHHHH
Confidence 4788998 77843 34566665 899999999999999999999999999999988655321 111222235
Q ss_pred EEEEEEEecCC
Q psy16868 77 AYVEIVFDNTD 87 (109)
Q Consensus 77 ~~i~~~fq~~~ 87 (109)
..|++++|++.
T Consensus 417 ~~i~~v~Q~~~ 427 (587)
T 3qf4_A 417 GHISAVPQETV 427 (587)
T ss_dssp HHEEEECSSCC
T ss_pred hheEEECCCCc
Confidence 67999999873
No 56
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.37 E-value=4.4e-15 Score=96.48 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=44.4
Q ss_pred ecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868 13 SYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 13 ~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
+|++..+++++. +++++|+||||||||||+++|+|+ .|..|.+.. . . .... ....+..|+++||++
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~-~---~-~~~~--~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR-I---I-LTRP--AVEAGEKLGFLPGTL 75 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE-E---E-EEEC--SCCTTCCCCSSCC--
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee-E---E-ecCC--chhhhcceEEecCCH
Confidence 344444455555 889999999999999999999999 998998751 1 1 1111 111245688889876
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.35 E-value=1.1e-12 Score=96.55 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=52.9
Q ss_pred EEEEece-eecCCCeeEecC-----CCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPF-----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~-----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.++++|+ +.|++.. +... .|++++|+||||||||||+++|+|++.|..|.+.+ ...
T Consensus 357 ~l~~~~l~~~~~~~~-l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-----------------~~~ 418 (607)
T 3bk7_A 357 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------------DLT 418 (607)
T ss_dssp EEEECCEEEECSSCE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----------------CCC
T ss_pred EEEEeceEEEecceE-EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------------eeE
Confidence 4778888 6777654 5443 28999999999999999999999999999998762 124
Q ss_pred EEEEEecCCCC
Q psy16868 79 VEIVFDNTDHR 89 (109)
Q Consensus 79 i~~~fq~~~~~ 89 (109)
|++++|++...
T Consensus 419 i~~v~Q~~~~~ 429 (607)
T 3bk7_A 419 VAYKPQYIKAE 429 (607)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEecCccCC
Confidence 89999986543
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.34 E-value=1.4e-12 Score=94.82 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=52.0
Q ss_pred EEEEece-eecCCCeeEecC-----CCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868 5 QVIIHGF-KSYKEQTVVEPF-----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY 78 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~-----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (109)
.++++|+ ..|++.. +..+ .|++++|+||||||||||+++|+|++.|..|.+.+ ...
T Consensus 287 ~l~~~~l~~~~~~~~-l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-----------------~~~ 348 (538)
T 1yqt_A 287 LVTYPRLVKDYGSFR-LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-----------------DLT 348 (538)
T ss_dssp EEEECCEEEEETTEE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----------------CCC
T ss_pred EEEEeeEEEEECCEE-EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------------Cce
Confidence 3677888 5676643 5443 28999999999999999999999999999998761 124
Q ss_pred EEEEEecCCC
Q psy16868 79 VEIVFDNTDH 88 (109)
Q Consensus 79 i~~~fq~~~~ 88 (109)
|++++|++..
T Consensus 349 i~~v~Q~~~~ 358 (538)
T 1yqt_A 349 VAYKPQYIKA 358 (538)
T ss_dssp EEEECSSCCC
T ss_pred EEEEecCCcC
Confidence 8999998754
No 59
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.30 E-value=5.4e-13 Score=105.01 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=61.1
Q ss_pred EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|+ .+|.+. .++++++ |+.++|+||+|||||||+++|.+++.|..|.+.+++. .....+....
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~----di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS----EIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTE----ETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCE----EhhhCCHHHH
Confidence 4888998 678542 4577666 8999999999999999999999999999999986553 2223333344
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|++|+|+|
T Consensus 1152 R~~i~~V~Qdp 1162 (1321)
T 4f4c_A 1152 RSQIAIVSQEP 1162 (1321)
T ss_dssp HTTEEEECSSC
T ss_pred HhheEEECCCC
Confidence 67799999987
No 60
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.29 E-value=3.7e-13 Score=105.72 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=59.8
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|+ ..|.+ ..++++++ |+.++|+||||||||||+++|.+++.|..|.+.+++... ........
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i----~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDI----RTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEG----GGSCHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEH----HhCCHHHH
Confidence 4788898 77854 24566665 899999999999999999999999999999988655321 11122233
Q ss_pred eEEEEEEEecCC
Q psy16868 76 NAYVEIVFDNTD 87 (109)
Q Consensus 76 ~~~i~~~fq~~~ 87 (109)
+..|++++|++.
T Consensus 463 r~~i~~v~Q~~~ 474 (1284)
T 3g5u_A 463 REIIGVVSQEPV 474 (1284)
T ss_dssp HHHEEEECSSCC
T ss_pred HhheEEEcCCCc
Confidence 556999999873
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.28 E-value=6.3e-13 Score=104.43 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=59.3
Q ss_pred EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.++++|+ ..|.+. .++++++ |+.++|+||||||||||+++|.+++.|..|.+.+++... ........
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i----~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI----KQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCT----TSSCHHHH
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEc----ccCCHHHH
Confidence 4788888 677542 3566666 899999999999999999999999999999998655321 11222233
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|++++|++
T Consensus 1106 r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A 1106 RAQLGIVSQEP 1116 (1284)
T ss_dssp TTSCEEEESSC
T ss_pred HhceEEECCCC
Confidence 56799999997
No 62
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.26 E-value=3.3e-13 Score=84.26 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=31.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++++|+||||||||||+++|++++ |..|.+...+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 7899999999999999999999999 8888877444
No 63
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.23 E-value=7.2e-12 Score=90.06 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=41.7
Q ss_pred eEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccch
Q psy16868 4 KQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61 (109)
Q Consensus 4 ~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~ 61 (109)
.++.+.|+..+.+.. + .+..++++|+|||||||||||++|+|++.|..|.+.+.+.
T Consensus 10 ~~l~~~~~~~l~~vs-l-~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 10 RSLTLINWNGFFART-F-DFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp EEEEEEEETTEEEEE-E-ECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred eEEEEeccccccceE-E-EEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 345555553344333 3 3334899999999999999999999999999999886553
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.22 E-value=2.1e-12 Score=101.77 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=60.0
Q ss_pred EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868 5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV 75 (109)
Q Consensus 5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (109)
.|+++|. .+|.. ..++++++ |+.++|+||+|||||||+++|.+.+.|..|.+..++. .....+....
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~----~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV----DVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE----ETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc----cchhccHHHH
Confidence 4788888 67743 34566665 8999999999999999999999999999999885543 1222233334
Q ss_pred eEEEEEEEecC
Q psy16868 76 NAYVEIVFDNT 86 (109)
Q Consensus 76 ~~~i~~~fq~~ 86 (109)
+..|++|+|++
T Consensus 491 r~~i~~v~Q~~ 501 (1321)
T 4f4c_A 491 RKNVAVVSQEP 501 (1321)
T ss_dssp HHHEEEECSSC
T ss_pred hhcccccCCcc
Confidence 56799999987
No 65
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.21 E-value=8.3e-12 Score=83.86 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
.++|+||||||||||+++|+++..+..|.+.+.+.. + ........+++++|.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~---i----~~~~~~~~i~~v~q~~~ 57 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK---I----PKTVEIKAIGHVIEEGG 57 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------C----CCCCSCCEEEESCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc---c----CcceeeeeeEEEeecCC
Confidence 368999999999999999999999999987744321 1 11122467899998753
No 66
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.17 E-value=1.7e-11 Score=89.22 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=42.7
Q ss_pred EEEEece-eecCCCeeEecC-----CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPF-----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~-----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.+++.|+ +.|++.. +... .|++++|+||||||||||+++|+|++.|..|.+.
T Consensus 269 ~l~~~~l~~~~~~~~-l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 326 (538)
T 3ozx_A 269 KMKWTKIIKKLGDFQ-LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT 326 (538)
T ss_dssp EEEECCEEEEETTEE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE
T ss_pred eEEEcceEEEECCEE-EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4677787 6777654 4332 2899999999999999999999999999999876
No 67
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.16 E-value=2.1e-11 Score=88.68 Aligned_cols=48 Identities=21% Similarity=0.130 Sum_probs=39.6
Q ss_pred ece-eecCCC-eeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 9 HGF-KSYKEQ-TVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 9 ~n~-~~~~~~-~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
+|+ +.|... .++.+++ |++++|+||||||||||+++|+|++.|..|.+
T Consensus 25 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~ 78 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78 (538)
T ss_dssp CCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred cCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 366 677664 2566663 78999999999999999999999999988874
No 68
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.16 E-value=1.8e-11 Score=90.24 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=40.5
Q ss_pred ece-eecCCCe-eEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 9 HGF-KSYKEQT-VVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 9 ~n~-~~~~~~~-~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
+|+ +.|+... ++.+++ |++++|+||||||||||+++|+|++.|..|.+
T Consensus 95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~ 148 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148 (607)
T ss_dssp GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence 677 7787652 566664 78999999999999999999999999988884
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.14 E-value=6.8e-12 Score=96.24 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=45.2
Q ss_pred EEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868 6 VIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59 (109)
Q Consensus 6 i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~ 59 (109)
|+++|+ +.|.. ..++++++ |++++|+||||||||||+++|+|++.|..|.+.+.
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 788898 67854 34466655 89999999999999999999999999999988743
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.12 E-value=8.1e-12 Score=81.33 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=27.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH 58 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~ 58 (109)
+++++|+||||||||||+++|++++ + |.+.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 7899999999999999999999988 4 66653
No 71
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.08 E-value=3.9e-11 Score=76.80 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=40.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDH 88 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~ 88 (109)
++.++|+||||||||||+++|++++. ..| +.+.+... . ........+++++|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~----~--~~~~~~~~ig~~~~~~~g 56 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT----E--EVRQGGRRIGFDVVTLSG 56 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC----C--EEETTSSEEEEEEEETTS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec----c--hhHhhhceEEEEEEeccc
Confidence 47899999999999999999999998 777 66443211 1 111124678899988633
No 72
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.6e-10 Score=85.15 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=30.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
|++++|+|||||||||||++|+|++.|..|.+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 89999999999999999999999999999987
No 73
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.04 E-value=2.7e-11 Score=79.11 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc--Cccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~ 57 (109)
|++++|+||||||||||+++|++.+++ ..+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~ 50 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS 50 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEE
Confidence 789999999999999999999999875 344443
No 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.02 E-value=6.4e-11 Score=86.21 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=30.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
|++++|+||||||||||+++|+|++.|..|.+
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 78999999999999999999999999999986
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.00 E-value=1.3e-10 Score=74.75 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
|++++|+||||||||||+++|++++.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999999985
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.00 E-value=1.4e-10 Score=82.57 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=44.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchh----hhhhhcCCCCceeeEEEEEEEecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR----QALLHEGTGPRVVNAYVEIVFDNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~fq~~ 86 (109)
|+.++|+||||||||||+++|+++..+..|.+...+.. .++.............|.+++|+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~ 222 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPAD 222 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCC
Confidence 88999999999999999999999999998887755431 111111111112356799999864
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.98 E-value=2.2e-10 Score=78.36 Aligned_cols=30 Identities=23% Similarity=0.066 Sum_probs=27.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
+++++|+||||||||||+++|++++.+..|
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 679999999999999999999999987543
No 78
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.97 E-value=1.1e-10 Score=79.45 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=36.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccc---cchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH---SDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
+++++|+||||||||||+++|+++..+..|.+.. .+. + +..... ......++++||.|.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~--~-~t~~~~-~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGR--H-TTTTAQ-LLKFDFGGYVVDTPG 230 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCC-EEECTTSCEEESSCS
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCC--C-ceeeeE-EEEcCCCCEEEECcC
Confidence 7899999999999999999999999999998874 221 1 111111 111124789999875
No 79
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.97 E-value=3.3e-10 Score=78.84 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=40.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEE-ecC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVF-DNT 86 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f-q~~ 86 (109)
++.++|+||||||||||+++|.+++.+..|.+.+.+. ..+ .....+..+++++ |.+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~-~e~-----~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV-PEL-----FLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS-SCC-----CCTTCSSEEEEECC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc-ccc-----CccccCCEEEEeecCcc
Confidence 7899999999999999999999999998898874432 111 1111245688888 654
No 80
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.94 E-value=4.3e-10 Score=71.25 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=24.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|+||||||||||+++|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46889999999999999999999987
No 81
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.93 E-value=2.1e-10 Score=76.71 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC-cccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE-STSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~-~~~~~~~~ 60 (109)
+++++|+||||||||||+++|.+++.+. .|.+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 7899999999999999999999999887 78876443
No 82
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.93 E-value=1.6e-10 Score=85.10 Aligned_cols=62 Identities=18% Similarity=0.025 Sum_probs=36.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc-CcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD-ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD 87 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~ 87 (109)
-..++|+||||||||||+++|+|++.| ..|.+.+.+...... ........+..|+++||++.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~-~~~~~~~~~~~i~~v~Q~~~ 107 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLK-KLVNEDKWRGKVSYQDYEIE 107 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEE-ECSSSSCCEEEESCC---CC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEe-cCCccccceeEEeeeccccc
Confidence 356999999999999999999999877 688887554321111 11112234678999998753
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.92 E-value=7.8e-10 Score=85.03 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=35.6
Q ss_pred EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHH
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~ 47 (109)
.+...|+ +.|++..++++++ |++++|+||||||||||+++|++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4555677 7787776676665 89999999999999999999995
No 84
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.91 E-value=4.1e-10 Score=76.63 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee-EEEEEEEecCCCC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN-AYVEIVFDNTDHR 89 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~fq~~~~~ 89 (109)
+.+++|+||||+|||||+++|. .+.+..|.+........-... ...... ..+++++|.|.-.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~--~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTT--GVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCC--CEEEEEETTTEEEESSCCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCcee--eEEEEEcCCCcEEEECcCcC
Confidence 7899999999999999999999 888999998741100000100 011111 1478999988543
No 85
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.90 E-value=6.9e-10 Score=69.59 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=28.4
Q ss_pred CCceEEEecCCCCcchHHH------------HHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFF------------AIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~------------al~~~l~~~~~~~~ 57 (109)
+++++|+||||||||||++ .+.+++.+..+...
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~ 53 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQT 53 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGG
T ss_pred CEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchh
Confidence 7899999999999999999 78888877766544
No 86
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.90 E-value=1e-10 Score=82.90 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=31.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~ 59 (109)
+++++|+|||||||||||++|.+.+.+..|.+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 67899999999999999999999999888877643
No 87
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.89 E-value=1.2e-10 Score=80.29 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++++|+|+||||||||+++|.+++.+..|.+.+.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 679999999999999999999999998888776443
No 88
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.88 E-value=5.3e-10 Score=76.96 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=33.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
++.++|+||||||||||+++|++++.+..|.+.+.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 789999999999999999999999999989887544
No 89
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.88 E-value=4.4e-10 Score=80.48 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=31.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc-c-cccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST-S-LRHS 59 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~-~-~~~~ 59 (109)
|++++|+||||||||||+++|++++.+..| . +.++
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vd 174 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYIN 174 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEc
Confidence 899999999999999999999999998888 7 6643
No 90
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.88 E-value=7.9e-10 Score=75.38 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=32.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++++|+|||||||||++..|++++.+..|.+.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 679999999999999999999999999888877544
No 91
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.88 E-value=7.5e-10 Score=70.59 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=24.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
|++++|+||||||||||+++|+++++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 68999999999999999999999863
No 92
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.88 E-value=6e-10 Score=75.92 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++++|+|||||||||+++.|++++.+..|.+.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 789999999999999999999999998888877443
No 93
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.87 E-value=1.1e-09 Score=70.15 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..++|+||||||||||+++|.+++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 57899999999999999999999875
No 94
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.87 E-value=8.2e-10 Score=71.10 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc---Cccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD---ESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~---~~~~~~ 57 (109)
+++++|+||||||||||+++|++++.+ ..+.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~ 57 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 679999999999999999999999985 345444
No 95
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.85 E-value=8.5e-10 Score=81.34 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+++++|+||||||||||+++|+|++.|..|.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 4789999999999999999999999998885
No 96
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=9e-10 Score=78.16 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=30.0
Q ss_pred EEEeceeecCCCeeEecCC-----CCc--eEEEecCCCCcchHHHHHHHhh
Q psy16868 6 VIIHGFKSYKEQTVVEPFD-----KRH--NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 6 i~i~n~~~~~~~~~l~~~~-----~~~--~~i~G~NG~GKStll~al~~~l 49 (109)
+++.+-+.|+... +.+++ |++ ++|+||||||||||+++|+|+.
T Consensus 17 l~~~~~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 17 VPLAGHVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCCCCCC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEeeEEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3444444565543 44433 778 9999999999999999999884
No 97
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.84 E-value=1.2e-09 Score=77.30 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=30.4
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~ 59 (109)
+++|+||||||||||+++|+|++.+..|.+...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~ 103 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 103 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEEC
Confidence 999999999999999999999999999987633
No 98
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.83 E-value=1.2e-09 Score=69.15 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=22.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+||||||||||+++|++++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999985
No 99
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.82 E-value=1.9e-09 Score=70.31 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=17.4
Q ss_pred CCceEEEecCCCCcchHHHHHH-Hhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQ-FVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~-~~l 49 (109)
+++++|+||||||||||+++|+ +++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 7899999999999999999999 987
No 100
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.81 E-value=1.6e-09 Score=70.85 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=25.5
Q ss_pred CCceEEEecCCCCcchHHHHHH--HhhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQ--FVLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~--~~l~~~~~~ 55 (109)
|++++|+||||||||||+++|+ +++.+..+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~ 62 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPG 62 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 7899999999999999999999 663444443
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.81 E-value=1.4e-09 Score=71.62 Aligned_cols=25 Identities=32% Similarity=0.159 Sum_probs=23.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+||||||||||+++|++++
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999976
No 102
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.81 E-value=2.1e-09 Score=73.22 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc--cCcccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS--DESTSLRH 58 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~--~~~~~~~~ 58 (109)
+.+++|+|+||||||||+++|++++. +..|.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 57999999999999999999999988 77777664
No 103
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.80 E-value=2e-09 Score=73.45 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=27.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
|++++|+||||||||||+++|++++ .|.+.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~ 155 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL 155 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH---TCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc---CceEE
Confidence 8899999999999999999999998 56654
No 104
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.80 E-value=1.5e-09 Score=75.52 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=32.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++++|+|||||||||++..|++++.+..|.+.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 789999999999999999999999998888876443
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.79 E-value=2.3e-09 Score=69.27 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+++++|+||||||||||+++|++.+.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999999996654
No 106
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.79 E-value=1.7e-09 Score=74.49 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=32.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
+++++|+|||||||||++..|++++.+..|.+.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 689999999999999999999999999888876443
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.79 E-value=2.2e-09 Score=68.85 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|+||||||||||+++|++++.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999998764
No 108
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.79 E-value=4.9e-10 Score=76.54 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=22.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH 58 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~ 58 (109)
+++++|+|+||+|||||+++|.+.+.+..|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 7899999999999999999999999988888763
No 109
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.78 E-value=2.9e-09 Score=67.11 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=25.2
Q ss_pred CCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 23 FDKRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 23 ~~~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+.+++|+||||||||||+++|.+.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999999875
No 110
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.78 E-value=2.2e-09 Score=67.74 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+++++|+||||||||||+++|++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999999999987
No 111
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.77 E-value=2.2e-09 Score=74.69 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc-cCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS-DESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~-~~~~~~~ 57 (109)
+++++|+||||+|||||+++|.+.+. +..|.+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 78999999999999999999999998 8888876
No 112
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.75 E-value=3.2e-09 Score=73.58 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=32.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~ 60 (109)
|+.++|+||||||||||+++|+++..+..|.+...+
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 899999999999999999999999998888765433
No 113
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.73 E-value=4.9e-09 Score=71.26 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=20.2
Q ss_pred eecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHh-hccCcc
Q psy16868 12 KSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFV-LSDEST 54 (109)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~-l~~~~~ 54 (109)
+.|....++.+++ =.++|+|+||+|||||+++|.+. +.+..|
T Consensus 6 ~~~~~~~~l~~~~-~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 6 NQVHRKSVKKGFE-FTLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp ------------C-EEEEEEEETTSSHHHHHHHHHC--------
T ss_pred ceECCEEEEcCCC-EEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 4566655565555 33489999999999999999987 677666
No 114
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.73 E-value=3.4e-09 Score=76.45 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~ 59 (109)
+.+++|+|+||||||||++.|++++.+..|.+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 67999999999999999999999999888887743
No 115
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.72 E-value=2.6e-09 Score=74.21 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=29.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCc----cccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES----TSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~----~~~~ 57 (109)
++.++|+||||||||||+++|++++.+.. |.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~ 206 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREF 206 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHH
Confidence 57899999999999999999999999877 6654
No 116
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.70 E-value=2.5e-09 Score=70.39 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=28.4
Q ss_pred CCceEEEecCCCCcchHHHHHH---HhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQ---FVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~---~~l~~~~~~~~ 57 (109)
+.+++|+||||||||||+++|+ ++..+..|.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~ 62 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFL 62 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHH
Confidence 5789999999999999999999 87777666554
No 117
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.69 E-value=6.5e-09 Score=75.32 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS 59 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~ 59 (109)
+..++|+|||||||||++++|++++.+..+.+...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 67899999999999999999999999888876633
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.68 E-value=1.2e-09 Score=69.80 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=27.6
Q ss_pred EEEece-eecCCCeeEecCC---CCceEEEecCCCCcchHHHHHHHhh-----ccCcccc
Q psy16868 6 VIIHGF-KSYKEQTVVEPFD---KRHNVVVGRNGSGKSNFFFAIQFVL-----SDESTSL 56 (109)
Q Consensus 6 i~i~n~-~~~~~~~~l~~~~---~~~~~i~G~NG~GKStll~al~~~l-----~~~~~~~ 56 (109)
|+++|+ +.|.. .++.+++ +..++|+|+||+|||||+++|.+.. .+..|..
T Consensus 4 l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~ 62 (210)
T 1pui_A 4 LNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62 (210)
T ss_dssp -------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred hhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc
Confidence 677777 56643 2243444 5679999999999999999999877 4555543
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.67 E-value=4.9e-09 Score=73.21 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=29.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC-ccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE-STSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~-~~~~~ 57 (109)
+++++|+|||||||||++++|.+++.+. .|.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~ 169 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 169 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE
Confidence 6789999999999999999999999876 67764
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.66 E-value=5.3e-09 Score=72.71 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=28.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC-cccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE-STSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~-~~~~ 56 (109)
+++++|+||||||||||+++|.+++.+. .+.+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 6799999999999999999999999876 4544
No 121
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.65 E-value=3.7e-09 Score=66.62 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=29.4
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccC---cccccccc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSD 60 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~ 60 (109)
+.++|+|+||||||||+++|.+++.+. .|.+.+++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 468999999999999999999999987 67777543
No 122
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.65 E-value=1e-08 Score=65.27 Aligned_cols=30 Identities=23% Similarity=0.058 Sum_probs=26.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
+.+++|+|||||||||++++|++.+.+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 678999999999999999999998855433
No 123
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.65 E-value=1e-08 Score=74.31 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=31.2
Q ss_pred CCceEEEecCCCCcchHHHH--HHHhhccCcccccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFA--IQFVLSDESTSLRHSD 60 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~a--l~~~l~~~~~~~~~~~ 60 (109)
|++++|+||||||||||+++ ++|++.+..|.+.+.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 78999999999999999999 6899987778776443
No 124
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.64 E-value=5.9e-09 Score=73.86 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=33.8
Q ss_pred EEEEece-eecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868 5 QVIIHGF-KSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES 53 (109)
Q Consensus 5 ~i~i~n~-~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~ 53 (109)
.|.+.|+ +.|....++.+++ =-++|+|+||+|||||+++|++...+..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vs-f~I~lvG~sGaGKSTLln~L~g~~~~~~ 59 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFE-FTLMVVGESGLGKSTLINSLFLTDLYSP 59 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCC-EEEEEECCTTSSHHHHHHHHTTCCCCCC
T ss_pred cEEEEecceeECCEEEecCCC-EEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 3677888 7787666565655 2359999999999999999999876433
No 125
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.63 E-value=1.3e-08 Score=64.96 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=23.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|+||||||||+++|++.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999999999876
No 126
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.62 E-value=7.3e-09 Score=76.98 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=20.6
Q ss_pred CCceEEEecCCCCcchHH---------------------HHHHHhhccCcccc
Q psy16868 25 KRHNVVVGRNGSGKSNFF---------------------FAIQFVLSDESTSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll---------------------~al~~~l~~~~~~~ 56 (109)
+++++|+||||||||||+ +.+.++..+..+.+
T Consensus 44 Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i 96 (670)
T 3ux8_A 44 GKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI 96 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEE
T ss_pred CCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccce
Confidence 899999999999999998 77777776664433
No 127
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.60 E-value=1.9e-08 Score=64.73 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|+||||||||||+++|+..+.+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 678999999999999999999998764
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.58 E-value=1.2e-08 Score=64.00 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
++.++|+||||+|||||+++|++.+.+..|
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999874444
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.58 E-value=2.1e-08 Score=68.61 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=28.4
Q ss_pred CceEEEecCCCCcchHHHHHHHhh--------ccCccccccc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL--------SDESTSLRHS 59 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l--------~~~~~~~~~~ 59 (109)
++++|+|+||||||||++.|.+.. .+..|.+.++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~id 46 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVD 46 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCcc
Confidence 478999999999999999999986 5677776643
No 130
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.58 E-value=1.6e-08 Score=64.57 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=26.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+.+++|+|+|||||||++++|++.+. ..|.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~ 54 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGK 54 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence 68999999999999999999999886 3343
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.57 E-value=1.6e-08 Score=63.85 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.8
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
++++|+||||||||||+++|+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999873
No 132
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.57 E-value=1e-08 Score=67.90 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=28.6
Q ss_pred CCceEEEecCCCCcchHHHHHH---HhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQ---FVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~---~~l~~~~~~~~ 57 (109)
+.+++|+|||||||||++++|+ ++..+..|.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 5789999999999999999999 77777777654
No 133
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.56 E-value=3.3e-08 Score=61.38 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|+|+|||||||++++|+..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999999865
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.56 E-value=3.6e-08 Score=60.63 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 24 DKRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 24 ~~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
.++.++|+||||+|||||+++|++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999998875
No 135
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.55 E-value=3.1e-08 Score=66.71 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=27.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
|++++|+||||+|||||+..|++.+.+..|
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999987755
No 136
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.52 E-value=3.2e-08 Score=63.78 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=27.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
+++++|+||||||||||+..|++.+.+..+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v 54 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 68999999999999999999998776544443
No 137
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.51 E-value=4.1e-08 Score=62.79 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=27.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
+.+++|+|+|||||||++++|.+.+.+..+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 56899999999999999999999886554443
No 138
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.49 E-value=6e-08 Score=62.37 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=25.7
Q ss_pred cCCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 22 PFDKRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 22 ~~~~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+.+.+++|+||||||||||+++|.....
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45588999999999999999999998764
No 139
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.45 E-value=6.4e-08 Score=73.07 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=27.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc-cCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS-DESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~-~~~~~ 55 (109)
+++++|+|||||||||+|++|+++.. +..|.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 78999999999999999999999874 55554
No 140
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.44 E-value=7.4e-08 Score=59.99 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|+|||||||++++|+..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999875
No 141
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.44 E-value=9.8e-08 Score=65.54 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=23.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++|+||||||||||+++|.+++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999999986
No 142
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.43 E-value=1e-07 Score=73.85 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++++|+|||||||||+|++| |++.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 479999999999999999999 7765
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.37 E-value=1.4e-07 Score=64.69 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=26.1
Q ss_pred CceEEEecCCCCcchHHHHHHHhh----ccCcccc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL----SDESTSL 56 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l----~~~~~~~ 56 (109)
+.++|+||||+|||||+++|++.+ .+..|.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 678999999999999999999998 4444544
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.37 E-value=1.5e-07 Score=63.11 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=22.5
Q ss_pred eEEEecCCCCcchHHHHHHHhhcc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l~~ 51 (109)
++|+||||||||||+++|++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 899999999999999999998765
No 145
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.36 E-value=7e-08 Score=62.97 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+.+++|.|+|||||||++++|++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 679999999999999999999887
No 146
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.35 E-value=1.6e-07 Score=71.18 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++++|+|||||||||+|++|+++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 67999999999999999999999753
No 147
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.35 E-value=1.1e-07 Score=69.55 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=27.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
+.+++|+|+||||||||+++|++.+.+..|
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 678999999999999999999999987665
No 148
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.34 E-value=5.3e-08 Score=72.38 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.3
Q ss_pred CCceEEEecCCCCcchHHHHHH
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQ 46 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~ 46 (109)
+++++|+||||||||||+++|.
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 8999999999999999998764
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.33 E-value=2.4e-07 Score=60.19 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=22.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+++++|+||||+|||||+..|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999999984
No 150
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.33 E-value=2.2e-07 Score=58.69 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.5
Q ss_pred ceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
.++|+|+||+|||||++.+.+...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998764
No 151
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.32 E-value=1.5e-07 Score=60.78 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.8
Q ss_pred CceEEEecCCCCcchHHHHHHHhh---ccCccccc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL---SDESTSLR 57 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l---~~~~~~~~ 57 (109)
..++|+|++||||||+.+.|+..+ ....|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence 468999999999999999999876 34445543
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.28 E-value=3.5e-07 Score=62.05 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=26.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
+.+++|+|+||+||||++..|++.+.+..|
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 679999999999999999999999876445
No 153
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.25 E-value=3.8e-07 Score=57.77 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.4
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|+||+|||||+++|.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999753
No 154
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.25 E-value=2.4e-07 Score=71.11 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+++++|+|||||||||+|++|+++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHHH
Confidence 6899999999999999999998654
No 155
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.25 E-value=3.9e-07 Score=64.10 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.9
Q ss_pred CCceEEEecCCCCcchHHHHHHH
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~ 47 (109)
+..++|+|+||+|||||+++|.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 57899999999999999999999
No 156
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.25 E-value=3.8e-07 Score=62.22 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+.+++|+|+||+||||++..|++.+.+..+.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 578999999999999999999999987666554
No 157
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.24 E-value=5.1e-07 Score=60.34 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++++|+||||||||||+..|++.+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999998765
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.23 E-value=4.9e-07 Score=59.45 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.6
Q ss_pred eEEEecCCCCcchHHHHHHHhhc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l~ 50 (109)
++|+||||+|||||+++|++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999875
No 159
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.23 E-value=4.3e-07 Score=62.87 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+..++|+|++|||||||+++|.+.+.+..+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~ 104 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHK 104 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCe
Confidence 4678999999999999999999987655443
No 160
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.23 E-value=4.8e-07 Score=62.66 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
++++.|+||||||||||+..|++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999987
No 161
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.20 E-value=6e-07 Score=57.10 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=19.7
Q ss_pred ceEEEecCCCCcchHHHHHHH
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~ 47 (109)
.++|+|+|||||||+.+.|+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 478999999999999999998
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.20 E-value=6.4e-07 Score=59.79 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.6
Q ss_pred eEEEecCCCCcchHHHHHHHhhc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l~ 50 (109)
++|+||||+|||||+++|++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 78999999999999999999875
No 163
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.19 E-value=5.1e-07 Score=57.57 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=19.6
Q ss_pred ceEEEecCCCCcchHHHHHHH
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~ 47 (109)
+++|+|+|||||||+.+.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 164
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.19 E-value=5.7e-07 Score=69.20 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+++++|+|||||||||+|++|+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999999443
No 165
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.17 E-value=6.1e-07 Score=57.29 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|++||||||++++|+..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999875
No 166
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=9.1e-07 Score=56.32 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..++|+|++||||||+.++|+..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999997653
No 167
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.17 E-value=9.1e-07 Score=56.50 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|+||+|||||||.+.|...+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 67899999999999999999987663
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.16 E-value=9e-07 Score=61.97 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=23.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
++.++|+||||||||||+++|++.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 67999999999999999999998764
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.16 E-value=8.8e-07 Score=56.63 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCceEEEecCCCCcchHHHHHHH
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~ 47 (109)
+++++|+||||+|||||+..|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999988
No 170
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.15 E-value=3.6e-07 Score=69.63 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCcchHHHH-HHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFA-IQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~a-l~~~l~ 50 (109)
|++++|+|+||||||||+++ |++++.
T Consensus 523 Geiv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 523 GVMTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp SSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred CCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999997 777764
No 171
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.14 E-value=9.5e-07 Score=55.19 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|+|++||||||+.++|+..+.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 567899999999999999999987743
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=9.1e-07 Score=60.54 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=24.7
Q ss_pred eEEEecCCCCcchHHHHHHH-hhccCccccc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQF-VLSDESTSLR 57 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~-~l~~~~~~~~ 57 (109)
++|+||||+||||++++|++ ++.+..|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 88999999999999999999 5666666654
No 173
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.13 E-value=1.1e-06 Score=63.61 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=25.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
+++++|+|+||||||||+.++++...+.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 7899999999999999999999998764
No 174
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.12 E-value=1.3e-06 Score=55.53 Aligned_cols=26 Identities=38% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+++|+|++||||||+.+.|+..+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987753
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.12 E-value=1.3e-06 Score=57.99 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=26.8
Q ss_pred EEEece-e-ec-CCCeeEecCC--------CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 6 VIIHGF-K-SY-KEQTVVEPFD--------KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 6 i~i~n~-~-~~-~~~~~l~~~~--------~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
++++|+ . .| ....++++++ ++.++|+|++||||||+.++|+..+.
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 556665 2 45 3344444442 67999999999999999999998654
No 176
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.11 E-value=1.1e-06 Score=64.14 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+..++|+||||+|||||+++|+..+.+..+.+.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 678999999999999999999999987766655
No 177
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.08 E-value=1.1e-06 Score=59.38 Aligned_cols=27 Identities=30% Similarity=0.198 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|+|++|||||||++.|..++.+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 568999999999999999999998874
No 178
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.07 E-value=1.4e-06 Score=59.04 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=29.4
Q ss_pred CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 24 DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 24 ~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.+++++|+|+||+||||++..|++++.+..+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4678999999999999999999999987666654
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.05 E-value=1.7e-06 Score=59.33 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH 58 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~ 58 (109)
+.+++|+|+||+||||++..|++.+.+..+.+.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6789999999999999999999999876666553
No 180
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.03 E-value=2.1e-06 Score=53.92 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=25.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
+.+++|+|++||||||+.+.|+..+....+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~ 42 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGY 42 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 578899999999999999999988765433
No 181
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.02 E-value=2.1e-06 Score=59.13 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=26.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+.+++|+|++|+|||||+++|++.+.+..+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~ 86 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLK 86 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 5689999999999999999999988654443
No 182
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.01 E-value=2.7e-06 Score=53.58 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
.+++|+|++|||||||++.|...+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 56899999999999999999987653
No 183
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.00 E-value=2.5e-06 Score=60.20 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=22.1
Q ss_pred CCceEEEecCCCCcchHHHHH--HHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAI--QFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al--~~~l~~ 51 (109)
+++++|+||||||||||+..| .+++++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence 789999999999999999955 444443
No 184
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.00 E-value=2.9e-06 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.4
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
..++|+||+|+|||||++.|.--.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999986543
No 185
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.99 E-value=2.1e-06 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|++|+|||||++++.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 186
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.99 E-value=3e-06 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=21.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987653
No 187
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.98 E-value=1.8e-06 Score=55.42 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=25.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
+.+++|+|++||||||+.+.|...+.+..|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 678899999999999999999988764333
No 188
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.94 E-value=3.2e-06 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.2
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
..++|+|++|+|||||+++|.+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 467999999999999999998754
No 189
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.94 E-value=4.5e-06 Score=51.78 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|+|++||||||+.++|+-.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35688999999999999999987654
No 190
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.93 E-value=2.9e-06 Score=65.59 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.5
Q ss_pred CCceEEEecCCCCcchHHHHHH
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQ 46 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~ 46 (109)
|++++|+|+||||||||+++|.
T Consensus 668 GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 668 GVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999853
No 191
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.92 E-value=3.7e-06 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|++|+|||||+++|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.92 E-value=1.6e-06 Score=61.43 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+..++|+|+|||||||||++|+++.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 5789999999999999999998874
No 193
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.92 E-value=5.3e-06 Score=61.06 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=26.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES 53 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~ 53 (109)
+..++|+||||+|||||+++|++++.+..
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 67899999999999999999999997655
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.92 E-value=2.6e-06 Score=57.74 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+..++|+|++|+|||||+++|.+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4578999999999999999998863
No 195
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.90 E-value=6e-06 Score=53.53 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+++++|+||||+|||||+..++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999996655443
No 196
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.90 E-value=5.9e-06 Score=51.33 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|++||||||+.++|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999987653
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=5.6e-06 Score=54.42 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.2
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.-++|+||+|+|||||+++|+..+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999998765
No 198
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.88 E-value=5.7e-06 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++|+||+|||||||.++|+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 578999999999999999987654
No 199
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.87 E-value=3e-06 Score=65.33 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.6
Q ss_pred CCceEEEecCCCCcchHHHHHH
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQ 46 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~ 46 (109)
|++++|+|+||||||||+++|.
T Consensus 650 Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 650 GTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSEEECCBCTTSSHHHHHTTTH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999864
No 200
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.87 E-value=5.1e-06 Score=50.92 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.9
Q ss_pred ceEEEecCCCCcchHHHHH
Q psy16868 27 HNVVVGRNGSGKSNFFFAI 45 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al 45 (109)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 201
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.86 E-value=4.2e-06 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.+++|+|++||||||+.+.|+-.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998533
No 202
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.85 E-value=4e-06 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 203
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.85 E-value=8.1e-06 Score=53.29 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|.|++||||||+++.|...+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 568899999999999999999988764
No 204
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.83 E-value=9e-06 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|++||||||+.+.|+..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999999754
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=8.4e-06 Score=55.79 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.1
Q ss_pred eEEEecCCCCcchHHHHHHHhhccCc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVLSDES 53 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l~~~~ 53 (109)
.+|+||+|+||||++++++..+.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 88999999999999999999876543
No 206
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.83 E-value=8.2e-06 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999998854
No 207
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.83 E-value=8e-06 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999987554
No 208
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.82 E-value=7.4e-06 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.7
Q ss_pred CceEEEecCCCCcchHHHHHHH
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~ 47 (109)
.+++|.|++||||||+.+.|+-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3578999999999999999986
No 209
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.80 E-value=4.1e-06 Score=53.41 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.6
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988775
No 210
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.80 E-value=9.2e-06 Score=56.15 Aligned_cols=24 Identities=33% Similarity=0.238 Sum_probs=21.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
-..++|+|++|||||||+++|.+.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999994
No 211
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.79 E-value=1.1e-05 Score=54.78 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
+.+++++|+||+||||++..|++.+....+.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 568899999999999999999999876555443
No 212
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.79 E-value=8.8e-06 Score=54.84 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+||+||||||+.+.|.--+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999997544
No 213
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.78 E-value=9.4e-06 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|++||||||+.+.|+-.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999997654
No 214
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.77 E-value=7.1e-06 Score=54.13 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|+|++||||||+.+.|+..+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46788999999999999999988764
No 215
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.77 E-value=1.2e-05 Score=50.03 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=21.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+..++|+|++||||||+.++|+-.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998554
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.77 E-value=1.1e-05 Score=56.19 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=25.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~ 55 (109)
+.++.|+||+|+|||||+..++..+.+..+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 5689999999999999999998877654443
No 217
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.76 E-value=1.2e-05 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+..++|+|++||||||+.++|+-.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999999876
No 218
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.76 E-value=1.4e-05 Score=50.18 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=22.8
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
.+++|+|++|||||||+..|...+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 46789999999999999999888754
No 219
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.75 E-value=1.1e-05 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.202 Sum_probs=20.1
Q ss_pred CceEEEecCCCCcchHHHHHHH
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~ 47 (109)
-+++|+|++||||||+.+.|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 220
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.75 E-value=1.2e-05 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=21.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|++|+|||||+++|.+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 478999999999999999988654
No 221
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.75 E-value=1.6e-05 Score=49.65 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..++|+|+.||||||+.++|+-.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999986653
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.74 E-value=1.4e-05 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.2
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 223
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.74 E-value=1.1e-05 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|++|+|||||+++|.+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 468999999999999999987643
No 224
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.73 E-value=1.3e-05 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++|.|+.||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987654
No 225
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.72 E-value=1.5e-05 Score=56.62 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.7
Q ss_pred CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 24 DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 24 ~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
.+.+++++|+||+||||++..|++.+.+..+.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3678999999999999999999999987655544
No 226
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.71 E-value=1.2e-05 Score=56.97 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=21.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+||+|||||+++|.+..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999875
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.71 E-value=2.2e-05 Score=49.68 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.3
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
..+.|.||+|+|||+|+++|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 568899999999999999999877543
No 228
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.70 E-value=2.8e-05 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
-.++|+|+.|+|||||++.+.+--
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 468899999999999999997653
No 229
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.70 E-value=1.6e-05 Score=61.23 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=17.5
Q ss_pred CCceEEEecCCCCcchHH
Q psy16868 25 KRHNVVVGRNGSGKSNFF 42 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll 42 (109)
|++++|+|+||||||||+
T Consensus 610 Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 610 GVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CcEEEEEccCCCChhhhH
Confidence 899999999999999997
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.70 E-value=1.6e-05 Score=57.53 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.5
Q ss_pred eEEEecCCCCcchHHHHHHHhhc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l~ 50 (109)
++|+||||+|||||+++|++.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999875
No 231
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.69 E-value=1.9e-05 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|+||+|+|||+|+++|+..+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45688999999999999999998764
No 232
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.69 E-value=1.7e-05 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.6
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
.+++|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46899999999999999999865
No 233
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.68 E-value=1.9e-05 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.5
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+++|.|++||||||+.++|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 688999999999999999988654
No 234
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.67 E-value=2e-05 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998765
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=2.2e-05 Score=52.68 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=24.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDEST 54 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~~~ 54 (109)
..++|+||+|+|||+++++|+..+....+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 46889999999999999999998865433
No 236
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.66 E-value=1.9e-05 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+..++|+|+||+|||||+++|.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999987
No 237
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.66 E-value=1.5e-05 Score=55.54 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.4
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|++|+|||||+++|.+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 488999999999999999998654
No 238
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.65 E-value=1.9e-05 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 239
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.65 E-value=2.7e-05 Score=48.80 Aligned_cols=25 Identities=32% Similarity=0.229 Sum_probs=21.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|+.||||||+.+.|+-.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997654
No 240
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.64 E-value=2.3e-05 Score=49.75 Aligned_cols=25 Identities=28% Similarity=0.149 Sum_probs=21.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998654
No 241
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.64 E-value=2.8e-05 Score=48.29 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=17.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|.|++||||||+.+.|+-.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999975543
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.64 E-value=1.5e-05 Score=56.72 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~ 56 (109)
+.+++++|++|+||||++..|+..+....+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 56889999999999999999998887654443
No 243
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.64 E-value=2.7e-05 Score=49.99 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+..++|.||+|+|||||+++++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999877653
No 244
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.64 E-value=2e-05 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=20.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.+++|+|++||||||+.+.|+-.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999987543
No 245
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.63 E-value=2.4e-05 Score=48.79 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.1
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
-.++|+|+.|+|||||+.++.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998764
No 246
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.63 E-value=2.4e-05 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|.|+.||||||+.+.|+-.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999987654
No 247
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.62 E-value=2.7e-05 Score=48.91 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|+.||||||+.+.|+-.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997654
No 248
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.61 E-value=3.5e-05 Score=53.72 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=26.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR 57 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~ 57 (109)
...++|+|++||||||+++.|...+....+.+.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 467899999999999999999887765444443
No 249
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.60 E-value=3.4e-05 Score=52.80 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+..++|+||+|+|||||+++++..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999987643
No 250
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.60 E-value=3e-05 Score=49.27 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=21.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|+.||||||+.+.|+-.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998654
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=2.2e-05 Score=59.63 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+..++|+||+|||||||+++|++.+..
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 467889999999999999999998653
No 252
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.59 E-value=3.6e-05 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
.++|+||+|+|||||+++++..+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 78899999999999999999887653
No 253
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.58 E-value=3.2e-05 Score=46.89 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.6
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|+|+.|+|||||++++.+-.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998753
No 254
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.58 E-value=3.6e-05 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999998654
No 255
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.58 E-value=3.7e-05 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||+|+|||||+++|+..+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 5788999999999999999998774
No 256
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.57 E-value=3.5e-05 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|.||+|+||||++++|+..+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998764
No 257
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.57 E-value=3.9e-05 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.3
Q ss_pred eEEEecCCCCcchHHHHHHHhhc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l~ 50 (109)
++|+|++||||||+.++|+..+.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 88999999999999999998765
No 258
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.57 E-value=3.6e-05 Score=46.33 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.5
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++++|+.|+|||||++++.+-.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6899999999999999997653
No 259
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.57 E-value=4.5e-05 Score=47.56 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=20.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999997654
No 260
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.56 E-value=3.6e-05 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998653
No 261
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.56 E-value=3.9e-05 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|+|+.|+|||||++++.+--
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998653
No 262
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.55 E-value=3.7e-05 Score=46.39 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.4
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|+|+.|+|||||++++..-.
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999987643
No 263
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.55 E-value=4.7e-05 Score=48.98 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+++|+|+.||||||+.+.|+-.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999976553
No 264
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.55 E-value=3.9e-05 Score=48.13 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=20.4
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
-.++|+|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999863
No 265
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.55 E-value=3.5e-05 Score=48.01 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.8
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.+++|+|+.||||||+.+.|+-.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999997644
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.55 E-value=3.3e-05 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.1
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|+|+.||||||+.+.|+--+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999996544
No 267
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.55 E-value=3.9e-05 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998754
No 268
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.54 E-value=4e-05 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.5
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++++|+.|+|||||++++.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997654
No 269
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.54 E-value=4e-05 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++++|+.|+|||||++++.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 36899999999999999998653
No 270
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.54 E-value=4e-05 Score=46.61 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998653
No 271
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.54 E-value=4.5e-05 Score=47.00 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|+||.|+|||+++++++..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999987763
No 272
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.53 E-value=3.6e-05 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997754
No 273
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.53 E-value=3e-05 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|++|+|||||+++|.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999875
No 274
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.53 E-value=4.4e-05 Score=46.82 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 275
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.53 E-value=3.2e-05 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.5
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 36899999999999999997653
No 276
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.53 E-value=4.4e-05 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.8
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.+++|+|+.||||||+.+.|+-.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999997543
No 277
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.52 E-value=4.3e-05 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999997653
No 278
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.52 E-value=4.3e-05 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 46899999999999999998754
No 279
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.52 E-value=4.4e-05 Score=46.20 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.1
Q ss_pred eEEEecCCCCcchHHHHHHHh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~ 48 (109)
++|+|+.|+|||||++++.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 280
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.52 E-value=4.4e-05 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=18.4
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
-+++|.|++||||||+.+.|.-.+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999987543
No 281
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.51 E-value=3.9e-05 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.0
Q ss_pred eEEEecCCCCcchHHHHHHHh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~ 48 (109)
++++|+.|+|||||++++.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 282
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.51 E-value=4e-05 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=19.0
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|+|+.||||||+.+.|+--+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999996543
No 283
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.50 E-value=4.2e-05 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.4
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
-.++|+|+.|+|||||+++|.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999764
No 284
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.50 E-value=4.9e-05 Score=54.02 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.3
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||+|+|||||+++|+..+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998773
No 285
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.50 E-value=4.3e-05 Score=47.51 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.7
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 286
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.49 E-value=5e-05 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.4
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++++.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999864
No 287
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.49 E-value=4.4e-05 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998754
No 288
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.49 E-value=4.2e-05 Score=48.32 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.5
Q ss_pred CceEEEecCCCCcchHHHHHHH
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~ 47 (109)
-.++|+|++|+|||||++++.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999865
No 289
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.48 E-value=4.5e-05 Score=48.25 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=20.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
..+++|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999987543
No 290
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.48 E-value=4.3e-05 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.4
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|+|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999997653
No 291
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.48 E-value=4.3e-05 Score=46.83 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.3
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
-.++|+|+.|+|||||++++.+-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999764
No 292
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.48 E-value=5.5e-05 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.5
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++++.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999754
No 293
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.48 E-value=4.1e-05 Score=46.59 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.8
Q ss_pred eEEEecCCCCcchHHHHHHHh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~ 48 (109)
++|+|+.|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999998754
No 294
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.48 E-value=5.1e-05 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 295
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.48 E-value=5.2e-05 Score=46.94 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998643
No 296
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.48 E-value=5.2e-05 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.4
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998764
No 297
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.48 E-value=5.3e-05 Score=46.82 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.5
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|+|+.|+|||||+++|.+-.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999998644
No 298
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.48 E-value=5.4e-05 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=19.5
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+..-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 299
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.47 E-value=2.5e-05 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.3
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|++|+|||||+++|.+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3689999999999999998665
No 300
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.47 E-value=5.6e-05 Score=47.85 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+-+++|+|+.||||||+.+.|+-.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998654
No 301
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.46 E-value=6.5e-05 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.8
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..++|.||.|+|||||+++++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999987664
No 302
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.46 E-value=5.2e-05 Score=45.94 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.6
Q ss_pred eEEEecCCCCcchHHHHHHHh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~ 48 (109)
++|+|+.|+|||||++.+.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 689999999999999998653
No 303
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.46 E-value=3.7e-05 Score=47.40 Aligned_cols=21 Identities=24% Similarity=0.708 Sum_probs=18.7
Q ss_pred ceEEEecCCCCcchHHHHHHH
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~ 47 (109)
.++|+|++|+|||||++.+..
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999863
No 304
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.46 E-value=4.6e-05 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|++|+|||||+++|.+.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 305
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.45 E-value=6.1e-05 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=19.4
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++++|+.|+|||||++.+.+-.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999997644
No 306
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.45 E-value=6.6e-05 Score=51.96 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=21.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.++.|.||+|+|||||+..++....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999888775543
No 307
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.45 E-value=5.3e-05 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999997644
No 308
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.44 E-value=6.3e-05 Score=46.74 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=20.6
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999887654
No 309
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.44 E-value=6.7e-05 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46899999999999999997654
No 310
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.44 E-value=6e-05 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 36899999999999999998653
No 311
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.44 E-value=6.4e-05 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999998643
No 312
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.44 E-value=6.4e-05 Score=46.73 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++++|+.|+|||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 313
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.43 E-value=6.5e-05 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47889999999999999998654
No 314
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=6.5e-05 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.5
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|+.|+|||||++++.+-..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 468999999999999999976543
No 315
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.43 E-value=7.7e-05 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
-.++|+|+.||||||+.+.|+-.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999997654
No 316
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.43 E-value=5.6e-05 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.1
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.+++|+|++||||||+.+.|+-.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998764
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.42 E-value=6.8e-05 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.210 Sum_probs=21.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
-+++|.|+.||||||+.+.|+-.+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3688999999999999999987543
No 318
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.42 E-value=7.2e-05 Score=49.62 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|.||+|+|||+|+++|+..+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35688999999999999999988764
No 319
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.42 E-value=7.2e-05 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 320
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.42 E-value=7.8e-05 Score=45.83 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=21.7
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..++|+|+.||||||+.+.|+-.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999987543
No 321
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.42 E-value=6.8e-05 Score=47.71 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
-.++|+|+.|+|||||+.+|.+-..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999987653
No 322
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.41 E-value=6e-05 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.467 Sum_probs=19.2
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++++.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998654
No 323
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.41 E-value=4.9e-05 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
.++++|+|+.|+|||||+++|.+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 478999999999999999999875
No 324
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.41 E-value=6.4e-05 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.-+.|+||+|+|||+|+++|++...
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3478999999999999999998764
No 325
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.41 E-value=5.7e-05 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.8
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
..++|+|++|+|||||+++|.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 326
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.40 E-value=7.3e-05 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999997654
No 327
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=7.7e-05 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++++.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999874
No 328
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=7.7e-05 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 329
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.40 E-value=7.5e-05 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 46899999999999999998653
No 330
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.40 E-value=6.4e-05 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|..|+|||||+++|.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999876
No 331
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.39 E-value=7.7e-05 Score=46.92 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 46899999999999999998754
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.39 E-value=6.9e-05 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.1
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
-+++|+|+.||||||+.+.|+-.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998663
No 333
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.39 E-value=5.6e-05 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
...+.|+||.|+|||+++++++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999988764
No 334
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.39 E-value=8e-05 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+--
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998654
No 335
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.38 E-value=4.2e-05 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
.-.++|+|++|+|||||+++|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999998754
No 336
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.38 E-value=8.1e-05 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 337
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.38 E-value=8.5e-05 Score=46.78 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.7
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|+.|+|||||++++.+-..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 478999999999999999987543
No 338
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.38 E-value=8.2e-05 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=19.5
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999998876643
No 339
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.38 E-value=7.8e-05 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=19.4
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|.|+.||||||+.+.|+-.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999997644
No 340
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.38 E-value=7.7e-05 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.7
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|++|+|||||+++|.+.-
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999874
No 341
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.38 E-value=7.3e-05 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=19.6
Q ss_pred CceEEEecCCCCcchHHHHHHH
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~ 47 (109)
-+++|+|+.||||||+.+.|.-
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999973
No 342
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.37 E-value=8.7e-05 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.7
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999987543
No 343
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.37 E-value=8.8e-05 Score=45.76 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.5
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+..-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999854
No 344
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.37 E-value=8.7e-05 Score=46.67 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.5
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|++|+|||||+..+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 345
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.37 E-value=7.4e-05 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.6
Q ss_pred CceEEEecCCCCcchHHHHHHH
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~ 47 (109)
.+++|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999985
No 346
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.36 E-value=7.6e-05 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.3
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
-.++|+|+.|+|||||++.|.+-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999864
No 347
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.36 E-value=9.5e-05 Score=45.52 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.3
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+..-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4689999999999999999743
No 348
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.36 E-value=9e-05 Score=46.11 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999987643
No 349
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.36 E-value=7.4e-05 Score=50.32 Aligned_cols=25 Identities=36% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
-..++|+|+.|+|||||+++|.+.-
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 4578999999999999999998764
No 350
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=9.4e-05 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999987654
No 351
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.35 E-value=8.7e-05 Score=55.34 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc--Ccccc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSL 56 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~ 56 (109)
+..++|+|++|+|||||+++|.+.... ..|.+
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 467899999999999999999987653 34444
No 352
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.35 E-value=9.8e-05 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998754
No 353
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=9.4e-05 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||+|+||||++++++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999988764
No 354
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.34 E-value=0.0001 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.34 E-value=8.4e-05 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.4
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+-.++|+|+.||||||+.+.|+--
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999753
No 356
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.34 E-value=0.00011 Score=44.35 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|.||+|+|||++.++|.....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 45688999999999999999987653
No 357
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.34 E-value=0.00011 Score=48.01 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|.||.|+|||+++++|+..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999988764
No 358
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.33 E-value=8.5e-05 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|..|+|||||+++|.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998753
No 359
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.33 E-value=9.9e-05 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..--
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 360
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.00011 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.6
Q ss_pred CCceEEEecCCCCcchHHHHHHH
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~ 47 (109)
++.+++.||+||||||++..+..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 68899999999999998776643
No 361
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.33 E-value=0.0001 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++.+--
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998653
No 362
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.32 E-value=0.0001 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.3
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
..++|+|+.|+|||||+..|...+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
No 363
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.32 E-value=0.0001 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+++|+||+|||||||...|+-.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3688999999999999999988764
No 364
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.32 E-value=0.00011 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 365
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00011 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++++..-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997654
No 366
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.32 E-value=0.00011 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997643
No 367
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=0.00011 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..--
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 368
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.31 E-value=0.00011 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999997653
No 369
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.31 E-value=9e-05 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||+++|.+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999998753
No 370
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.31 E-value=9.3e-05 Score=49.35 Aligned_cols=26 Identities=23% Similarity=0.084 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
...++|+|..|+|||||+++|.+.-.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 34689999999999999999987643
No 371
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.31 E-value=0.00011 Score=45.88 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 372
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.30 E-value=9.6e-05 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=19.7
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 373
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.30 E-value=0.0001 Score=45.76 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=19.5
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999853
No 374
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.30 E-value=9.8e-05 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999987653
No 375
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.30 E-value=0.00012 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+--
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 376
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.30 E-value=0.00012 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|+.|+|||||++.+.+-..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 377
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.29 E-value=0.00014 Score=49.00 Aligned_cols=26 Identities=19% Similarity=-0.018 Sum_probs=21.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
..+.|.||+|+|||+|.++|+..+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45667799999999999999988753
No 378
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.29 E-value=9.8e-05 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.8
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4688999999999999998754
No 379
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.28 E-value=8.1e-05 Score=46.09 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++++|+.|+|||||++.+.+-
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 380
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.27 E-value=0.00012 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
-.++|+|+.||||||+.+.|+-.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999997654
No 381
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.27 E-value=0.00011 Score=48.89 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.1
Q ss_pred eEEEecCCCCcchHHHHHHH
Q psy16868 28 NVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~ 47 (109)
++|+|++|+|||||+++|.+
T Consensus 11 I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999854
No 382
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.26 E-value=0.00012 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|.+++|||||+++|.+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999984
No 383
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.26 E-value=8.6e-05 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=8.8
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+..-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999998754
No 384
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.26 E-value=9e-05 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999998643
No 385
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.26 E-value=0.00014 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999987654
No 386
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.25 E-value=0.00014 Score=45.77 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 387
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.25 E-value=0.00014 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.7
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++|+|+.|+|||||+..+..-..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999987543
No 388
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.25 E-value=0.0001 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|+|++||||||+.+.|+--+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678899999999999999986543
No 389
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.25 E-value=0.00017 Score=48.35 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|+||.|+|||++.++++..+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999988774
No 390
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.24 E-value=9.2e-05 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999998753
No 391
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.23 E-value=0.00018 Score=46.31 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.4
Q ss_pred cCCCCceEEEecCCCCcchHHHHHHHh
Q psy16868 22 PFDKRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 22 ~~~~~~~~i~G~NG~GKStll~al~~~ 48 (109)
.+.+..++|+||+|+|||||...|.--
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 444678899999999999999888654
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.23 E-value=0.00014 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.7
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+++|+||+|||||||...|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3678999999999999999987653
No 393
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.23 E-value=0.00016 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 394
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.23 E-value=0.0001 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
-.++|+|+.|+|||||++++.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999764
No 395
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.22 E-value=0.00013 Score=45.59 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=18.7
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998654
No 396
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.22 E-value=0.00013 Score=50.08 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+++|+||+|||||||...|+-.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4678999999999999999986653
No 397
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.21 E-value=0.00019 Score=47.81 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|+||.|+|||+++++|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998774
No 398
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.21 E-value=0.00014 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.2
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999987664
No 399
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.20 E-value=0.00013 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.4
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++++.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.20 E-value=0.00017 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+..++|+|+.||||||+.+.|+-.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998654
No 401
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.20 E-value=0.0002 Score=45.76 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..++|+|..|+|||||+..+.....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999987653
No 402
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.20 E-value=8.6e-05 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.-+.|.||+|+|||+|+++|+..+.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3467899999999999999998764
No 403
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.20 E-value=0.00023 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+++|+|++|+||||++..|+..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999998764
No 404
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.20 E-value=0.00016 Score=46.04 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.0
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999754
No 405
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.20 E-value=0.00022 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.3
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998765
No 406
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.19 E-value=0.00015 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||+++|.+--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 407
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.18 E-value=0.00016 Score=47.04 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.++.|+||.||||+|..+.|+--+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999999999887654
No 408
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.18 E-value=0.00019 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
..+.|.||.|+|||+++++++..+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 348899999999999999998765
No 409
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.18 E-value=0.00011 Score=55.86 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
+..++|+||+|+|||||.++|+..+...
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678899999999999999999987543
No 410
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.17 E-value=0.00013 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.2
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987654
No 411
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.17 E-value=0.00023 Score=46.82 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|.|++||||||+++.|.-.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999977664
No 412
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.17 E-value=5.3e-05 Score=48.31 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred CceEEEecCCCCcchHHHHHHHh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~ 48 (109)
-.++|+|+.|+|||||+++|.+-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46889999999999999999765
No 413
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00018 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
-+.|.||.|+|||+|.+||+.-+..
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999987653
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.17 E-value=0.00018 Score=45.12 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.0
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+..-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 415
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.17 E-value=0.0002 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.8
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47899999999999999987643
No 416
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.17 E-value=0.00018 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+..+.|.||.|+||||+++++...+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998766
No 417
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.16 E-value=0.00022 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|.||+|+|||++.++|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46788999999999999999998764
No 418
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.16 E-value=0.00018 Score=45.13 Aligned_cols=21 Identities=19% Similarity=0.613 Sum_probs=18.7
Q ss_pred ceEEEecCCCCcchHHHHHHH
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~ 47 (109)
.++|+|+.|+|||||++.+..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999854
No 419
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.16 E-value=0.00017 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
..++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999987643
No 420
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.16 E-value=0.00023 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
..+.|.||.|+|||+++++++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999988763
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.16 E-value=0.00016 Score=49.47 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|+||+|||||||...|+-.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35788999999999999999986654
No 422
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.15 E-value=0.00018 Score=47.55 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||.|+|||+|.++|+..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4577889999999999999988754
No 423
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.14 E-value=0.00018 Score=47.65 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.0
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++++|+.|+|||||+++|.+--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47789999999999999998643
No 424
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.13 E-value=0.00023 Score=45.05 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.4
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||+..+..-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
No 425
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.13 E-value=0.00023 Score=46.49 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=19.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|.|+.||||||+++.|.-.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999876654
No 426
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00021 Score=45.76 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46899999999999999998654
No 427
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00021 Score=50.88 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.4
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
.-+.|.||.|||||+|.+||+.-+..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 45788999999999999999987653
No 428
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.11 E-value=0.00023 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.0
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..++|+|+.|+|||||+..|+..+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999987763
No 429
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.11 E-value=0.00021 Score=47.58 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.++++|.+|+|||||+++|.+...
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred heEEeCCCCCCHHHHHHHHhcccc
Confidence 678999999999999999987544
No 430
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.11 E-value=0.00019 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.1
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+++|+||.|+|||||...|+--+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4789999999999999999987664
No 431
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.10 E-value=0.0003 Score=45.52 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|-|+.||||||+++.|.-.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999987765
No 432
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.10 E-value=0.00024 Score=45.92 Aligned_cols=26 Identities=23% Similarity=0.112 Sum_probs=22.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+.+++|.|+.||||||+++.|.-.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999977664
No 433
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.10 E-value=0.00025 Score=50.68 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
+.+++++|++|+||||++..|+..+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 4688899999999999999998877543
No 434
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00024 Score=50.68 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
.=+.|.||.|||||+|.+||+.-+...
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 457789999999999999999876543
No 435
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.10 E-value=0.00024 Score=45.33 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.1
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..--
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 436
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.09 E-value=9.1e-05 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=3.9
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++++.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999998765
No 437
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.00019 Score=46.12 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.9
Q ss_pred ceEEEecCCCCcchHHHHHHH
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~ 47 (109)
.++|+|++|+|||||+..+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999874
No 438
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.09 E-value=0.00017 Score=44.82 Aligned_cols=20 Identities=15% Similarity=0.590 Sum_probs=18.1
Q ss_pred ceEEEecCCCCcchHHHHHH
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQ 46 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~ 46 (109)
.++++|+.|+|||||++++.
T Consensus 24 ~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999984
No 439
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00027 Score=44.71 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.9
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||++.+..-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999987643
No 440
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.00027 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.-+.|.||.|+|||+|+++++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 457889999999999999999876
No 441
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.08 E-value=0.00027 Score=50.33 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+++++|.|++|+|||||+..|+.....
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988876653
No 442
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.08 E-value=0.00022 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.8
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.-+.|.||.|+|||+|+++|+..+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC
Confidence 4578899999999999999988764
No 443
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.08 E-value=0.00028 Score=49.87 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
|+..+|+|++|+|||||+..|+..+.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHh
Confidence 78999999999999999999988764
No 444
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.08 E-value=0.00029 Score=47.81 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.1
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||.|+|||+|+.+|+..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999988765
No 445
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.08 E-value=0.00024 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.5
Q ss_pred eEEEecCCCCcchHHHHHHHhhc
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l~ 50 (109)
++|+||.||||+|..+.|+--+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 57899999999999999876543
No 446
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.06 E-value=0.00024 Score=48.89 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+.++.|.||+|+|||||+..++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988875
No 447
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.05 E-value=0.00039 Score=50.49 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.0
Q ss_pred cCC-CCceEEEecCCCCcchHHHHHHH
Q psy16868 22 PFD-KRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 22 ~~~-~~~~~i~G~NG~GKStll~al~~ 47 (109)
++. ....+|.|++||||||++++|..
T Consensus 163 dL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 163 DLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EcccCceEEEECCCCCCHHHHHHHHHH
Confidence 443 57889999999999999999865
No 448
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00028 Score=49.82 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.1
Q ss_pred CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
.=+.|.||.|+|||.|.+||+.-+...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 457889999999999999999876543
No 449
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00027 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.+++|.|+.||||||+++.|+-.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 467899999999999999998766
No 450
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.03 E-value=0.00036 Score=48.26 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.7
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
...+.|+||.|+|||++.++|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998774
No 451
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.02 E-value=0.00043 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.3
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
..+.|.||.|+|||+++++|+..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999877643
No 452
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.01 E-value=0.00025 Score=48.07 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
+..+.|.||.|+|||+|+++|+..+...
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 5678899999999999999999877543
No 453
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.01 E-value=0.00036 Score=48.16 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
...+.|.||.|+|||+|+++|+..+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 35678999999999999999987754
No 454
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.01 E-value=0.00048 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
+..+.|.||.|+|||++.++|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 46788999999999999999988765
No 455
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.00 E-value=0.00028 Score=50.35 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.6
Q ss_pred ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
.+.|.||+|+|||||.++|+..+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 47889999999999999999887543
No 456
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.99 E-value=0.00039 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.378 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.++.|.|++|+|||||+..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 6789999999999999999887653
No 457
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.98 E-value=0.00041 Score=47.60 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+..+.|.||.|+|||||+++++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998765
No 458
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.98 E-value=0.00021 Score=43.09 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=21.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+..+.|.||.|+|||++.++|....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 4568899999999999999987543
No 459
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.97 E-value=0.00043 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.-+.|.||.|+|||+|.++|+..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3478899999999999999998764
No 460
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.97 E-value=0.00047 Score=44.70 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|.|+.||||||+++.|.-.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 567899999999999999999887754
No 461
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.96 E-value=0.00046 Score=46.43 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.9
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||.|+|||+++++|+..+.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999987654
No 462
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.96 E-value=0.00039 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
....+|+||+|+|||++.++|+..+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999999886
No 463
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.95 E-value=0.00049 Score=53.13 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=24.6
Q ss_pred eEEEEeceeec--CCCeeEecCC-CCceEEEecCCCCcchHH
Q psy16868 4 KQVIIHGFKSY--KEQTVVEPFD-KRHNVVVGRNGSGKSNFF 42 (109)
Q Consensus 4 ~~i~i~n~~~~--~~~~~l~~~~-~~~~~i~G~NG~GKStll 42 (109)
+.|.+++-+.. ++.. + ++. +.+++|+|.+|||||||.
T Consensus 2 ~~i~i~gar~hNLkni~-~-~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 2 NEIVVKGARVHNLKNIT-V-RIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CEEEEESBCSTTCCSBC-C-EEETTSEEEEEESTTSSSHHHH
T ss_pred CcEEEeCccccccCcce-e-ccCCCcEEEEECCCCCcHHHHH
Confidence 35777765322 2222 2 111 689999999999999994
No 464
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.95 E-value=8.5e-05 Score=47.26 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.9
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||+++|.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998743
No 465
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.94 E-value=0.00052 Score=49.02 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE 52 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~~ 52 (109)
..-+.|+||+|+||||+.++|+..+...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3568899999999999999999987643
No 466
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.94 E-value=0.00045 Score=43.63 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.5
Q ss_pred cCCCCceEEEecCCCCcchHHHHHHH
Q psy16868 22 PFDKRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 22 ~~~~~~~~i~G~NG~GKStll~al~~ 47 (109)
.+.+.-++|.|++|+||||+.-++..
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45577789999999999999887754
No 467
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.93 E-value=0.00034 Score=47.53 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.3
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||.|+|||+++++|+..+.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4588999999999999999998775
No 468
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.92 E-value=0.00043 Score=45.13 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.+++|.|+.||||||+.+.|.-.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 668899999999999999999876543
No 469
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.92 E-value=0.00038 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+++|+||+|+|||||...|+-.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4678999999999999999987654
No 470
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.89 E-value=0.00053 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.2
Q ss_pred CCceEEEecCCCCcchHH-HHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFF-FAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll-~al~~~ 48 (109)
+.+.+++||.|+||||++ +.+..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999997 555444
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.89 E-value=0.00035 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceEEEecCCCCcchHHHHHHHhhc
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+|.||.|+||||+..+|+..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999988875
No 472
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.89 E-value=0.00021 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.1
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
...++|+|++|+|||||+++|.+-
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 357899999999999999999764
No 473
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.92 E-value=0.00016 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.0
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||++.+..-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4789999999999999888653
No 474
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00052 Score=48.90 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.5
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
.=+.|.||.|+|||+|.+||+.-+..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred CCCceECCCCchHHHHHHHHHHHhCC
Confidence 45788999999999999999987653
No 475
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.85 E-value=0.00051 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++|+|+.|+|||||+++|.+--
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998863
No 476
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.85 E-value=0.00058 Score=52.28 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=17.0
Q ss_pred CCceEEEecCCCCcchHH
Q psy16868 25 KRHNVVVGRNGSGKSNFF 42 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll 42 (109)
+.+++|+|.+|||||||.
T Consensus 36 ~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 36 DALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp SSEEEEESSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 699999999999999995
No 477
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.84 E-value=0.00051 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
.-+.|.||.|+|||+|+++|+..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999876
No 478
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.84 E-value=0.00022 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
...++|+|..++|||||+++|.+.-
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998754
No 479
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.84 E-value=0.00061 Score=46.58 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
..+.|.||.|+||||++++++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34789999999999999999887653
No 480
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.83 E-value=0.00043 Score=48.68 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=18.8
Q ss_pred eEEEecCCCCcchHHHHHHHhh
Q psy16868 28 NVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 28 ~~i~G~NG~GKStll~al~~~l 49 (109)
++|+|.+++|||||+++|.+.-
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 6899999999999999998754
No 481
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.83 E-value=0.00069 Score=52.54 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=24.5
Q ss_pred eEEEEeceee--cCCCeeEecCC-CCceEEEecCCCCcchHH
Q psy16868 4 KQVIIHGFKS--YKEQTVVEPFD-KRHNVVVGRNGSGKSNFF 42 (109)
Q Consensus 4 ~~i~i~n~~~--~~~~~~l~~~~-~~~~~i~G~NG~GKStll 42 (109)
..|.+++-+. .++.. + ++. +.+++|+|.+|||||||.
T Consensus 22 ~~I~i~gar~hNLkni~-v-~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 22 DKIIVKGARAHNLKNID-V-EIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CEEEEEEECSSSCCSEE-E-EEETTSEEEEEESTTSSHHHHH
T ss_pred ceEEEeccccccCCcee-e-eccCCcEEEEECCCCCCHHHHH
Confidence 3566665532 23323 2 222 689999999999999994
No 482
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.81 E-value=0.00015 Score=45.51 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.2
Q ss_pred ceEEEecCCCCcchHHHHHHH
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~ 47 (109)
.++|+|+.|+|||||++++.+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999988754
No 483
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.81 E-value=0.00053 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.3
Q ss_pred ceEEEecCCCCcchHHHHHHHhh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~l 49 (109)
.++++|.+|+|||||+++|.+..
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEecCCCchHHHHHHHhcCc
Confidence 47899999999999999998654
No 484
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.00047 Score=49.52 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLSD 51 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~~ 51 (109)
+.-+.|.||.|+|||+|.+||+.-+..
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 345778899999999999999987654
No 485
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.79 E-value=0.00041 Score=44.23 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.5
Q ss_pred ceEEEecCCCCcchHHHH-HHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFA-IQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~a-l~~~ 48 (109)
.++|+|+.|+|||||++. +.+-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999998 4443
No 486
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.00078 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.0
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||.|+||||++++++..+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5688899999999999999988763
No 487
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.74 E-value=0.00073 Score=43.33 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.6
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.+++|=|+-||||||+++.|.-.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5678889999999999999987663
No 488
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.73 E-value=0.0008 Score=49.45 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.+|.|++|+||||++.+|...+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999987664
No 489
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.73 E-value=0.00072 Score=47.07 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.8
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+.|.||.|+|||+|.++|+..+.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4678899999999999999987754
No 490
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.71 E-value=0.00078 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.9
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+..++|.||.|+|||||++.+..-
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 478899999999999999988654
No 491
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.71 E-value=0.00028 Score=46.56 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.8
Q ss_pred CCceEEEecCCCCcchHHHHHHHhh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l 49 (109)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999987665
No 492
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.69 E-value=0.00071 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHh
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~ 48 (109)
+.++.|.|++|+|||+|+..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888753
No 493
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.69 E-value=0.001 Score=43.38 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=22.2
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
..+++++|+.|+||||++..|+..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999987665
No 494
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.69 E-value=0.00093 Score=47.57 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.4
Q ss_pred CceEEEecCCCCcchHHHHHHHhhc
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
.-+.|.||.|+|||++.++|+..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4578899999999999999998876
No 495
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.69 E-value=0.001 Score=45.50 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=22.0
Q ss_pred cCCCCceEEEecCCCCcchHHHHHHH
Q psy16868 22 PFDKRHNVVVGRNGSGKSNFFFAIQF 47 (109)
Q Consensus 22 ~~~~~~~~i~G~NG~GKStll~al~~ 47 (109)
.+.+.-++|+|++|+||||+..+|..
T Consensus 141 ~~~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 141 DVYGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHh
Confidence 44567789999999999999988876
No 496
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.67 E-value=0.00068 Score=45.88 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.1
Q ss_pred ceEEEecCCCCcchHHHHHHHh
Q psy16868 27 HNVVVGRNGSGKSNFFFAIQFV 48 (109)
Q Consensus 27 ~~~i~G~NG~GKStll~al~~~ 48 (109)
.++|+|+.|+|||||+..+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999997654
No 497
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.67 E-value=0.00071 Score=48.70 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
++..+|+|++|+|||||+..|.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhh
Confidence 78899999999999999999877654
No 498
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.66 E-value=0.00087 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.0
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
..++|.||.|+|||||++.+..-.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999987654
No 499
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.66 E-value=0.00087 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868 25 KRHNVVVGRNGSGKSNFFFAIQFVLS 50 (109)
Q Consensus 25 ~~~~~i~G~NG~GKStll~al~~~l~ 50 (109)
...++|+|++|+||||++..|+..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999986654
No 500
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.64 E-value=0.00075 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.4
Q ss_pred CceEEEecCCCCcchHHHHHHHhh
Q psy16868 26 RHNVVVGRNGSGKSNFFFAIQFVL 49 (109)
Q Consensus 26 ~~~~i~G~NG~GKStll~al~~~l 49 (109)
..++|+|..|+|||||+++|.+.-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999998754
Done!