RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16868
(109 letters)
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 83.2 bits (204), Expect = 8e-21
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR 62
+ + + FKSY+ T V + ++G NGSGKSN AI FVL S LR S+
Sbjct: 3 LVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLR-SNIL 61
Query: 63 QALLHEGTGPRVVNAYVEIVFDNTD 87
+ L++ G N +DN
Sbjct: 62 KDLIYRGVL----NDENSDDYDNEG 82
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 81.9 bits (201), Expect = 1e-20
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
YI+++ + GFKSY + VV PF K +VG NGSGKSN AI FVL S +
Sbjct: 2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRAS 61
Query: 61 SRQALLHEGTG--PRVVNAYVEIVFDNTDHRVP 91
L+ G+ P A V I F+N D P
Sbjct: 62 RISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFP 94
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 81.2 bits (199), Expect = 2e-20
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M +K++ + GFKS+ +++ F R +VG NGSGKSN AI++V ++S +
Sbjct: 1 MRLKKLYLKGFKSFGRPSLIG-FSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRAS 59
Query: 61 SRQALLHEGT--GPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRC 106
+ ++ G+ P +AYVE+VF+ + + T + Y
Sbjct: 60 EKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELKRTGENTYYL 107
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 70.6 bits (171), Expect = 2e-16
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
M +++V + F+S+ + V F + N+++G+NGSGKS+ AI L
Sbjct: 1 MKLERVTVKNFRSHSDTVV--EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDI 56
Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRCSYG 109
+ G ++ E S + + G
Sbjct: 57 KKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVG 105
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 62.0 bits (149), Expect = 1e-13
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
+ + + + + +T D+ + G NG+GKS A L + T L +
Sbjct: 2 GKFRSLTLINWNGFFARTF--DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 59
Query: 61 SRQALLHEGTGPRVV-------NAYVEIVFDNTDHR 89
+ +A G+ + + Y + N+ H+
Sbjct: 60 TTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQ 95
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 60.5 bits (145), Expect = 8e-13
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55
M +++V + F+S+ + V F + N+++G+NGSGKS+ AI L
Sbjct: 1 MKLERVTVKNFRSHSDTVV--EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI 53
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.3 bits (60), Expect = 0.31
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 12 KSYKEQTVVEPFD---KRHNVV--VGRNGSGKSNFFFAI 45
K ++ +++ + + +G NG+GK+ I
Sbjct: 10 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRII 48
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.8 bits (59), Expect = 0.46
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 12 KSYKEQTVVEPFD---KRHNVV--VGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALL 66
K + E T V K + +G +G GK+ I + + D A
Sbjct: 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP 70
Query: 67 HEGTGPRVVNAYVEIVFDN 85
+G + + +VF +
Sbjct: 71 EKGIFVPPKDRDIAMVFQS 89
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.8 bits (59), Expect = 0.54
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 12 KSYKEQTVVEPFD---KRHNVV--VGRNGSGKSNFFFAI 45
K++ E V + + V VG +G GKS I
Sbjct: 8 KAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI 46
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 26.7 bits (59), Expect = 0.55
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 12 KSYKEQTVVEPFD---KRHNVV--VGRNGSGKSNFFFAI 45
K + T V + K + +G +G GK+ I
Sbjct: 14 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMI 52
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.8 bits (58), Expect = 0.57
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 24 DKRHNVVVGRNGSGKSNFFFAI 45
+ RH +V G G+GKS +
Sbjct: 49 EPRHLLVNGATGTGKSVLLREL 70
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.5 bits (57), Expect = 0.59
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Query: 29 VVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDH 88
++ G G GK+ I L + + R + TG + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTG-FRIITTEGKKKIFSSK 62
Query: 89 RVPGFIRCRSTSVDLYRC 106
S V++
Sbjct: 63 FFTSKKLVGSYGVNVQYF 80
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.4 bits (58), Expect = 0.61
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 12 KSYKEQTVVEPFD---KRHNVV--VGRNGSGKSNFFFAI 45
Y ++ D R +V +G NG+GK+ AI
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAI 52
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 26.5 bits (57), Expect = 0.68
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 29 VVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDH 88
++ G+ GSGK++ AI + + +Q + +V Y + V +
Sbjct: 36 LLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNF---DELVKLYEKDVVKHVTP 92
Query: 89 RVPGFIRCRSTSVDLYRCSYG 109
+ + +
Sbjct: 93 YSNRMTEAIISRLSDQGYNLV 113
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 0.74
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 12 KSYKEQTVVEPFD---KRHNVV--VGRNGSGKSNFFFAI 45
K + E ++ + +V +G NGSGKS I
Sbjct: 12 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVI 50
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.6 bits (56), Expect = 0.96
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 54 TSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSV 101
S + + LL EG+ + V ++E +R T+V
Sbjct: 3 PSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAV 50
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.0 bits (57), Expect = 0.97
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 12 KSYKEQTVVEPFD---KRHNVV--VGRNGSGKSNFFFAI---------QFVLSDESTSLR 57
K Y V++ + +V+ +G +GSGKS F I +++ ++ +L
Sbjct: 10 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLV 69
Query: 58 HSDSRQALLHEGTGPRVVNAYVEIVFDN 85
Q + + R++ + +VF +
Sbjct: 70 RDKDGQLKVADKNQLRLLRTRLTMVFQH 97
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.7 bits (56), Expect = 1.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 29 VVVGRNGSGKSNFFFAIQFVLSDE 52
+VG NG+GKS + + S +
Sbjct: 29 HLVGPNGAGKSTLLARMAGMTSGK 52
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 25.5 bits (55), Expect = 1.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 29 VVVGRNGSGKSNFFFAIQFVLSDESTSL 56
V G GSGKS+F ++ + ++E +
Sbjct: 60 AVTGETGSGKSSFINTLRGIGNEEEGAA 87
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 25.4 bits (55), Expect = 1.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 29 VVVGRNGSGKSNFFFAI 45
V++G G+GKS F I
Sbjct: 28 VLLGPTGAGKSVFLELI 44
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 25.5 bits (55), Expect = 1.7
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 22 PFDKRHNVV--VGRNGSGKS 39
P K N+ VG GSGK+
Sbjct: 5 PVLKDRNLWFLVGLQGSGKT 24
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.2 bits (54), Expect = 1.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 29 VVVGRNGSGKSNFFFAI 45
+V+G+ G GKS+ +I
Sbjct: 36 LVMGKGGVGKSSTVNSI 52
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.0 bits (54), Expect = 1.9
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 29 VVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE 68
V++G G+GK+ F I +S + L
Sbjct: 30 VILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP 69
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 25.3 bits (55), Expect = 1.9
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 29 VVVGRNGSGKS 39
+ G GSGK+
Sbjct: 66 AITGSTGSGKT 76
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 24.9 bits (54), Expect = 2.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 29 VVVGRNGSGKSNFFFAIQFVLSDESTSLR 57
+VGR+GSGKS IQ E+ +
Sbjct: 33 GIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.4 bits (53), Expect = 3.3
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 29 VVVGRNGSGKS 39
G +G GKS
Sbjct: 32 AFAGPSGGGKS 42
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 24.5 bits (53), Expect = 3.4
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 29 VVVGRNGSGKSNFFFAI 45
G NG GK+ I
Sbjct: 31 NFHGPNGIGKTTLLKTI 47
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 24.6 bits (53), Expect = 3.5
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 23 FDKRHNVVVGRNGSGKSNF 41
DK +N++ NG
Sbjct: 297 GDKSYNLISFANGIFGCCC 315
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 24.4 bits (53), Expect = 3.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 29 VVVGRNGSGKSNFFFAI 45
VG +G GKS I
Sbjct: 48 AFVGMSGGGKSTLINLI 64
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 24.3 bits (52), Expect = 4.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 29 VVVGRNGSGKSNFFFAI 45
++G +G+GK+ F I
Sbjct: 35 GILGPSGAGKTTFMRII 51
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 24.1 bits (52), Expect = 4.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 29 VVVGRNGSGKSNFFFAI 45
+VG NGSGKS +
Sbjct: 44 ALVGPNGSGKSTVAALL 60
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 23.9 bits (51), Expect = 4.8
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGR 33
+++ + F+ E+ +EP++K H + V R
Sbjct: 195 EVERELSEYFEV-IERLNLEPYEKDHALFVVR 225
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 23.8 bits (50), Expect = 4.9
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 26 RHNVVVGRNGSGKS 39
RH + G G GK+
Sbjct: 2 RHVFLTGPPGVGKT 15
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 23.8 bits (50), Expect = 5.1
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 29 VVVGRNGSGKSNFFFAIQFVLS 50
+V G+GKS A+Q
Sbjct: 33 ALVSPGGAGKS--MLALQLAAQ 52
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 377
Score = 23.8 bits (51), Expect = 5.2
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 23 FDKRHNVVVGRNGSGKSNF 41
FDK +V +GS +
Sbjct: 294 FDKTLQFIVAEDGSCGLVY 312
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 23.8 bits (51), Expect = 5.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 23 FDKRHNVVVGRNGSGKSNF 41
+DK VVGR+G+
Sbjct: 295 YDKSLQFVVGRDGTCGVVC 313
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 23.6 bits (51), Expect = 5.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 29 VVVGRNGSGKS 39
+VGR+GSGKS
Sbjct: 45 ALVGRSGSGKS 55
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 23.4 bits (49), Expect = 6.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 29 VVVGRNGSGKSNFFFAI 45
V+VG GK+ +
Sbjct: 6 VMVGLPARGKTYISKKL 22
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 23.5 bits (49), Expect = 7.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 24 DKRHNVVVGRNGSGKS 39
+KR+ +VG G+GKS
Sbjct: 1 EKRNIFLVGPMGAGKS 16
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 23.2 bits (49), Expect = 9.2
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
+ + ++ F + V G++G GKS+ AI L + +
Sbjct: 73 IGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL 132
Query: 61 SR 62
R
Sbjct: 133 GR 134
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 23.1 bits (49), Expect = 9.4
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 22 PFDKRHNVV--VGRNGSGKS 39
P + + VV VG NG GK+
Sbjct: 1 PVEPKGRVVLVVGVNGVGKT 20
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 22.9 bits (48), Expect = 9.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 29 VVVGRNGSGKSNFFFAIQFVLSDEST 54
+++G SGKS F ++ + + T
Sbjct: 6 LLLGAGESGKSTFLKQMRIIHGQDPT 31
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 23.1 bits (48), Expect = 9.6
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 29 VVVGRNGSGKSNFFFAI 45
++ G SGK++ +
Sbjct: 7 IIAGPQNSGKTSLLTLL 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.412
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,318
Number of extensions: 15882
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 54
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.6 bits)