BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1687
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P61222|ABCE1_MOUSE ATP-binding cassette sub-family E member 1 OS=Mus musculus GN=Abce1
PE=2 SV=1
Length = 599
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 88/101 (87%)
Query: 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
+ +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct: 499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 558
Query: 66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct: 559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNK 64
L + R +++ + VVEHD + YLSD + G PS + P ++ G+N
Sbjct: 252 RLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINI 311
Query: 65 FLS 67
FL
Sbjct: 312 FLD 314
>sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1
PE=1 SV=1
Length = 599
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 88/101 (87%)
Query: 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
+ +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct: 499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 558
Query: 66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct: 559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNK 64
L + R +++ + VVEHD + YLSD + G PS + P ++ G+N
Sbjct: 252 RLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINI 311
Query: 65 FLS 67
FL
Sbjct: 312 FLD 314
>sp|Q8LPJ4|AB2E_ARATH ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2
PE=2 SV=1
Length = 605
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 81/98 (82%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
+VIKRFILHAKKT FVVEHDFIMATYL+DRVIV+EG PSI AN PQ+LL+GMN FLS
Sbjct: 508 KVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSIDCTANCPQSLLSGMNLFLSH 567
Query: 69 LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
L ITFRRDP NFRPRINK S KD EQK AG Y++ ++
Sbjct: 568 LNITFRRDPTNFRPRINKLESTKDREQKSAGSYYYLDD 605
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67
QV+ R +L VVEHD + YLSD + G P + P ++ G+N FL+
Sbjct: 257 QVV-RSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLA 314
>sp|Q9LID6|AB1E_ARATH ABC transporter E family member 1 OS=Arabidopsis thaliana GN=ABCE1
PE=2 SV=1
Length = 603
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 84/98 (85%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
+VIKRFILHAKKT F+VEHDFIMATYL+DRVIV+EG P++ +A++PQ+LL+GMN FLS
Sbjct: 506 KVIKRFILHAKKTAFIVEHDFIMATYLADRVIVYEGQPAVKCIAHSPQSLLSGMNHFLSH 565
Query: 69 LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
L ITFRRDP NFRPRINK S+KD EQK AG Y++ ++
Sbjct: 566 LNITFRRDPTNFRPRINKLESIKDKEQKTAGSYYYLDD 603
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
QVI+ + H VVEHD + YLSD V G P + P ++ G+N FL+
Sbjct: 257 QVIRSLLRHDSYV-IVVEHDLSVLDYLSDFVCCLYGKPGAYGVVTLPFSVREGINVFLAG 315
Query: 69 L----GITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFF 103
+ FR + F R+++ D E K +Y +
Sbjct: 316 FIPTENLRFRDESLTF--RVSETTQENDGEVKSYARYKY 352
>sp|Q03195|RLI1_YEAST Translation initiation factor RLI1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RLI1 PE=1 SV=1
Length = 608
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 78/97 (80%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
+VI+RFILH KKT F+VEHDFIMATYL+D+VIVFEG PS + A AP++LL G N+FL
Sbjct: 508 KVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKN 567
Query: 69 LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYE 105
L +TFRRDPN+FRPRINK +S D EQK +G YFF +
Sbjct: 568 LNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNYFFLD 604
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 11 IKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS--- 67
I R +L K VEHD + YLSD V + G PS+ + P ++ G+N FL
Sbjct: 263 IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHI 322
Query: 68 -LLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFY 104
+ FR + FR ++ +D + A + F Y
Sbjct: 323 PAENLRFRTEALQFR----IADATEDLQNDSASRAFSY 356
>sp|O60102|RLI1_SCHPO Translation initiation factor rli1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rli1 PE=3 SV=1
Length = 593
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 75/97 (77%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
+VI+RFI++++KT F+VEHDFIMATYL+DRVI+FEG PS N PQ+LL GMN FL
Sbjct: 496 KVIRRFIVNSRKTAFIVEHDFIMATYLADRVILFEGQPSRDARCNPPQSLLTGMNTFLKN 555
Query: 69 LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYE 105
L +TFRRDPN RPRINK +S D EQK AG YFF E
Sbjct: 556 LDVTFRRDPNTLRPRINKFDSQMDQEQKNAGNYFFLE 592
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 13 RFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFL 66
R +L VVEHD + YLSD V V G PS+ + P ++ G+N FL
Sbjct: 263 RSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREGINIFL 316
>sp|Q58129|Y719_METJA Uncharacterized ABC transporter ATP-binding protein MJ0719
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0719
PE=3 SV=1
Length = 600
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 59/98 (60%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
+VI+R + FVV+HD + Y+SDR IVF G P + ++P N +G NKFL
Sbjct: 503 KVIRRIADEKEAGMFVVDHDILFQDYISDRFIVFSGEPGKFGVGSSPMNKRDGANKFLKE 562
Query: 69 LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
+ ITFRRDP RPR NK S +D QK G+Y++ +E
Sbjct: 563 MQITFRRDPETGRPRANKEGSQRDIMQKEKGEYYYVDE 600
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 24 VVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF----LSLLGITFRRDPNN 79
VVEHD I+ YLSD + + G PS + + P+++ G+N++ L I FR++P
Sbjct: 274 VVEHDLIVLDYLSDYIHIMYGVPSAYGIVSMPKSVRVGINEYLYGELREENIRFRKEPII 333
Query: 80 FRPR 83
F R
Sbjct: 334 FEKR 337
>sp|Q4J8Z2|OTC_SULAC Ornithine carbamoyltransferase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=argF PE=3 SV=1
Length = 306
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 51 LANAPQNLLNGMNKFLSLLGITFR-RDPNNFRPRINKNNSVKDCEQKRAGQYFFYEEP 107
+ + N+L + +F+S +G+ R P FRP+ +++ +K FYE+P
Sbjct: 156 IGDGTDNVLTSLMEFVSKMGLELRVASPKEFRPKQEVWRRIEEESEKSGAIIEFYEDP 213
>sp|Q8PP41|SSUB1_XANAC Aliphatic sulfonates import ATP-binding protein SsuB 1
OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=ssuB1 PE=3 SV=1
Length = 252
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 23 FVVEHDFIMATYLSDRVIVFEGSPSISTLANA 54
+V HD A YLSDRVIV G P T+A+A
Sbjct: 188 LLVTHDIDEAVYLSDRVIVIGGQP--GTIAHA 217
>sp|Q5JJY4|P2C04_ORYSJ Protein kinase and PP2C-like domain-containing protein OS=Oryza
sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1
Length = 657
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 1 MFPLHLTLQVIKRFIL-HAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59
+ P+ L + R + HA+ +++ DF L+D++ V E +PS+ + +L
Sbjct: 82 VLPIELDHPGLARLVAAHARPPNYLMFFDFFEPPNLADKIHVEEWNPSVQQVVTIATDLA 141
Query: 60 NGMNKFLSLLGITFR 74
+ ++L++LGI R
Sbjct: 142 KAL-QYLNILGIVHR 155
>sp|Q5WCI1|SSUB2_BACSK Aliphatic sulfonates import ATP-binding protein SsuB 2 OS=Bacillus
clausii (strain KSM-K16) GN=ssuB2 PE=3 SV=1
Length = 256
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43
Q+++R L + T +V HD A L+DR+IV E
Sbjct: 174 QLVERLWLIHRFTALLVTHDVSEAVMLADRIIVIE 208
>sp|Q57855|Y412_METJA Uncharacterized ABC transporter ATP-binding protein MJ0412
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0412
PE=3 SV=1
Length = 267
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 19 KKTGFVVEHDFIMATYLSDRVIVFEGSPS 47
KKT F V H A YLSDRV+V P
Sbjct: 198 KKTVFFVTHSVDEAVYLSDRVVVLTARPG 226
>sp|Q3K6R9|HMUV_PSEPF Hemin import ATP-binding protein HmuV OS=Pseudomonas fluorescens
(strain Pf0-1) GN=hmuV PE=3 SV=1
Length = 255
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59
H TLQ ++ F V+ HD +A DR+++ EG ++ + PQ +L
Sbjct: 175 HTTLQAVREFADRGAAV-LVILHDLNLAARYCDRILLLEGGRPVAL--DTPQQVL 226
>sp|Q5NN23|SSUB_ZYMMO Aliphatic sulfonates import ATP-binding protein SsuB OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=ssuB PE=3 SV=1
Length = 240
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43
++I+ L K T +V HD A YL+DRVI E
Sbjct: 167 KLIESLWLEQKFTVLLVTHDVSEAVYLADRVIALE 201
>sp|C3PND5|MURG_RICAE UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Rickettsia africae (strain ESF-5) GN=murG
PE=3 SV=1
Length = 376
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 15 ILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59
+L +KTG+ +E + I A L+D+++ +P I L +A QNLL
Sbjct: 316 LLEDEKTGWCLEQNNISAGKLADKILELISNPKI--LEDASQNLL 358
>sp|Q92I58|MURG_RICCN UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=murG PE=3 SV=1
Length = 376
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 15 ILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59
+L +KTG+ +E + I A L+D+++ +P I L +A QNLL
Sbjct: 316 LLEDEKTGWCLEQNNISAGKLADKILELISNPKI--LEDASQNLL 358
>sp|C4K2A6|MURG_RICPU UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Rickettsia peacockii (strain Rustic)
GN=murG PE=3 SV=1
Length = 376
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 15 ILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59
+L +KTG+ +E + I A L+D+++ +P I L +A QNLL
Sbjct: 316 LLEDEKTGWCLEQNNISAGKLADKILDLISNPKI--LEDASQNLL 358
>sp|Q123S8|Y4324_POLSJ UPF0173 metal-dependent hydrolase Bpro_4324 OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=Bpro_4324 PE=3 SV=1
Length = 273
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 42 FEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINKNNSV 90
F +P ++ L P + MN+ + LLGI P N PR NK+ ++
Sbjct: 87 FADAPELALLNQVPMHAPGDMNQTVGLLGIL----PPNLVPRFNKSGTI 131
>sp|A8GRZ6|MURG_RICRS UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Rickettsia rickettsii (strain Sheila
Smith) GN=murG PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 15 ILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59
+L +KTG+ +E + I A L+D+++ +P I L +A QNLL
Sbjct: 316 LLADEKTGWCLEQNNISAGKLADKILDLISNPKI--LEDASQNLL 358
>sp|B0BXF6|MURG_RICRO UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Rickettsia rickettsii (strain Iowa)
GN=murG PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 15 ILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59
+L +KTG+ +E + I A L+D+++ +P I L +A QNLL
Sbjct: 316 LLADEKTGWCLEQNNISAGKLADKILDLISNPKI--LEDASQNLL 358
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 16 LHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFR 74
+ AK G V +++ TYL ++ S + L+ A N++N +F LG+ F+
Sbjct: 287 MQAKSNGVVSFDNYLQKTYLKTGSLITNSCRSAAILSGADSNIINISTEFGKNLGLAFQ 345
>sp|Q49Z71|MURA1_STAS1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=murA1 PE=3 SV=1
Length = 419
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 30 IMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINKNNS 89
I A L++ + EG P IS + +LL +N L G+T DPN NN
Sbjct: 31 IPAAILAEDKVTIEGLPEISDVETL-VSLLGDLNIKTELDGMTLNVDPNEIENAPLPNNK 89
Query: 90 VKDCEQKRAGQY 101
V E RA Y
Sbjct: 90 V---ESLRASYY 98
>sp|P32500|NDC1_YEAST Nucleoporin NDC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NDC1 PE=1 SV=1
Length = 655
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMN 63
+ L + V ++ +H K GF FI+ LS + +V++G S+ ++
Sbjct: 73 VSLLIIVTRKNYMHVKNFGFANSLTFILGQLLSVKFLVYQGVYSMGSI------------ 120
Query: 64 KFLS-LLGITFRRDPNNFRP 82
LS +LG+ F R + ++P
Sbjct: 121 -LLSFVLGVVFGRGGSGWKP 139
>sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2
Length = 22152
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 47 SISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINK 86
S+ + N+PQNL N N+ L+ L T D P INK
Sbjct: 4502 SMEPVTNSPQNLNNPSNEILATLAAT--TDIETIHPSINK 4539
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,234,580
Number of Sequences: 539616
Number of extensions: 1438417
Number of successful extensions: 3926
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3907
Number of HSP's gapped (non-prelim): 33
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)