Query psy1687
Match_columns 107
No_of_seqs 182 out of 1634
Neff 6.6
Searched_HMMs 46136
Date Sat Aug 17 00:11:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1245 Predicted ATPase, RNas 99.9 2.3E-21 5E-26 156.9 8.8 100 5-104 492-591 (591)
2 PRK13409 putative ATPase RIL; 99.8 1.1E-20 2.3E-25 156.7 11.3 101 5-105 490-590 (590)
3 cd03237 ABC_RNaseL_inhibitor_d 99.8 4E-20 8.6E-25 138.5 10.6 95 5-99 152-246 (246)
4 COG1120 FepC ABC-type cobalami 99.5 3.4E-14 7.5E-19 108.1 8.8 80 4-88 174-257 (258)
5 KOG0063|consensus 99.4 4.8E-13 1E-17 108.4 6.1 98 7-104 495-592 (592)
6 COG4559 ABC-type hemin transpo 99.3 1.3E-11 2.8E-16 92.7 7.0 76 5-86 178-257 (259)
7 COG4604 CeuD ABC-type enteroch 99.2 2.4E-11 5.2E-16 90.6 5.9 64 5-73 172-239 (252)
8 COG1125 OpuBA ABC-type proline 99.2 7.3E-11 1.6E-15 90.6 6.1 62 5-69 172-235 (309)
9 COG4175 ProV ABC-type proline/ 99.0 5.1E-10 1.1E-14 88.1 5.7 53 6-61 202-255 (386)
10 COG0444 DppD ABC-type dipeptid 99.0 8.7E-10 1.9E-14 86.1 5.8 54 5-61 190-244 (316)
11 COG1126 GlnQ ABC-type polar am 98.9 1.5E-09 3.2E-14 81.5 5.1 52 5-60 173-225 (240)
12 COG1116 TauB ABC-type nitrate/ 98.9 1.4E-09 2.9E-14 82.6 4.8 44 5-48 167-210 (248)
13 COG0411 LivG ABC-type branched 98.9 2.3E-09 5E-14 81.2 5.9 54 4-60 185-239 (250)
14 COG1127 Ttg2A ABC-type transpo 98.9 1.9E-09 4.1E-14 81.9 5.2 56 5-63 182-238 (263)
15 COG1122 CbiO ABC-type cobalt t 98.9 3.3E-09 7.3E-14 79.7 5.9 54 5-61 175-229 (235)
16 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 4E-09 8.7E-14 80.3 6.1 52 5-60 176-227 (254)
17 cd03222 ABC_RNaseL_inhibitor T 98.9 1.1E-08 2.5E-13 73.7 7.9 69 5-73 108-176 (177)
18 COG1123 ATPase components of v 98.8 5.8E-09 1.3E-13 86.3 5.9 54 5-61 191-245 (539)
19 COG3842 PotA ABC-type spermidi 98.8 1.1E-08 2.4E-13 81.1 6.0 54 5-61 173-227 (352)
20 PRK15093 antimicrobial peptide 98.8 1.7E-08 3.8E-13 78.5 6.2 53 5-60 195-248 (330)
21 PRK11022 dppD dipeptide transp 98.8 1.9E-08 4.1E-13 78.3 6.3 53 5-60 190-243 (326)
22 PRK09536 btuD corrinoid ABC tr 98.7 4.5E-08 9.8E-13 78.5 8.0 51 5-59 176-227 (402)
23 PRK09473 oppD oligopeptide tra 98.7 2.7E-08 5.9E-13 77.6 6.1 53 5-60 198-251 (330)
24 COG3638 ABC-type phosphate/pho 98.7 2.7E-08 5.8E-13 75.5 5.8 54 5-61 184-238 (258)
25 COG1118 CysA ABC-type sulfate/ 98.7 2.8E-08 6.1E-13 77.9 6.0 54 5-61 174-228 (345)
26 TIGR01186 proV glycine betaine 98.7 3E-08 6.6E-13 78.6 6.1 54 5-61 166-220 (363)
27 PRK11308 dppF dipeptide transp 98.7 3.2E-08 6.9E-13 77.1 6.0 53 5-60 191-244 (327)
28 PRK15079 oligopeptide ABC tran 98.7 3.5E-08 7.6E-13 77.1 6.2 53 5-60 198-251 (331)
29 TIGR03265 PhnT2 putative 2-ami 98.7 4.2E-08 9.1E-13 77.3 6.2 53 5-60 171-224 (353)
30 COG1135 AbcC ABC-type metal io 98.7 2.6E-08 5.5E-13 78.1 4.9 53 5-60 178-231 (339)
31 PRK10851 sulfate/thiosulfate t 98.7 4.4E-08 9.6E-13 77.1 6.3 53 5-60 173-226 (353)
32 TIGR02314 ABC_MetN D-methionin 98.7 3.9E-08 8.5E-13 77.3 6.0 53 5-60 177-230 (343)
33 TIGR03258 PhnT 2-aminoethylpho 98.7 4.5E-08 9.7E-13 77.5 6.4 54 5-61 174-229 (362)
34 cd03236 ABC_RNaseL_inhibitor_d 98.7 9.9E-08 2.1E-12 72.0 7.8 63 5-68 176-238 (255)
35 PRK11650 ugpC glycerol-3-phosp 98.7 4.9E-08 1.1E-12 77.0 6.3 53 5-60 171-224 (356)
36 PRK13637 cbiO cobalt transport 98.7 5.5E-08 1.2E-12 74.2 6.3 53 5-60 181-234 (287)
37 COG1124 DppF ABC-type dipeptid 98.7 3.4E-08 7.4E-13 75.0 4.9 53 5-60 178-231 (252)
38 PRK11432 fbpC ferric transport 98.7 5.5E-08 1.2E-12 76.6 6.1 53 5-60 173-226 (351)
39 COG1123 ATPase components of v 98.6 5.1E-08 1.1E-12 80.8 5.9 54 5-61 466-520 (539)
40 PRK13634 cbiO cobalt transport 98.6 7.1E-08 1.5E-12 73.6 6.1 53 5-60 182-235 (290)
41 TIGR03415 ABC_choXWV_ATP choli 98.6 7.6E-08 1.6E-12 76.8 6.3 53 5-60 201-254 (382)
42 PRK09452 potA putrescine/sperm 98.6 8.8E-08 1.9E-12 76.2 6.1 53 5-60 181-234 (375)
43 PRK13537 nodulation ABC transp 98.6 9.3E-08 2E-12 73.7 6.0 52 5-60 175-227 (306)
44 cd03261 ABC_Org_Solvent_Resist 98.6 7.9E-08 1.7E-12 70.7 5.3 52 5-59 173-225 (235)
45 PRK13643 cbiO cobalt transport 98.6 9.3E-08 2E-12 72.9 5.8 52 5-60 181-233 (288)
46 PRK13646 cbiO cobalt transport 98.6 1.1E-07 2.5E-12 72.3 6.2 53 5-60 182-235 (286)
47 PRK11607 potG putrescine trans 98.6 1.2E-07 2.6E-12 75.4 6.2 53 5-60 186-239 (377)
48 TIGR01187 potA spermidine/putr 98.6 1.3E-07 2.8E-12 73.5 6.2 53 5-60 137-190 (325)
49 PRK13651 cobalt transporter AT 98.6 1.3E-07 2.8E-12 73.0 5.6 52 5-60 202-254 (305)
50 PRK13536 nodulation factor exp 98.5 1.6E-07 3.4E-12 73.7 6.0 52 5-60 209-261 (340)
51 COG1131 CcmA ABC-type multidru 98.5 1.8E-07 4E-12 71.9 6.3 56 4-62 172-228 (293)
52 PRK13652 cbiO cobalt transport 98.5 1.8E-07 4E-12 70.8 6.2 53 5-60 174-227 (277)
53 PRK11000 maltose/maltodextrin 98.5 1.8E-07 3.9E-12 74.0 6.3 53 5-60 170-223 (369)
54 cd03256 ABC_PhnC_transporter A 98.5 2.1E-07 4.5E-12 68.4 6.2 52 5-59 181-233 (241)
55 PRK10261 glutathione transport 98.5 1.5E-07 3.4E-12 78.6 6.2 53 5-60 500-553 (623)
56 PRK13636 cbiO cobalt transport 98.5 1.8E-07 3.9E-12 71.2 5.9 53 5-60 178-231 (283)
57 COG4172 ABC-type uncharacteriz 98.5 1.3E-07 2.9E-12 76.8 5.2 54 5-61 194-248 (534)
58 PRK11144 modC molybdate transp 98.5 2.1E-07 4.6E-12 73.1 6.3 54 5-61 165-219 (352)
59 PRK13647 cbiO cobalt transport 98.5 2.4E-07 5.2E-12 70.2 6.0 50 5-58 175-225 (274)
60 COG4555 NatA ABC-type Na+ tran 98.5 2.1E-07 4.5E-12 69.7 5.5 54 4-61 169-223 (245)
61 PRK10261 glutathione transport 98.5 2.2E-07 4.8E-12 77.7 6.3 52 5-59 205-257 (623)
62 COG4608 AppF ABC-type oligopep 98.5 1.9E-07 4.1E-12 71.6 5.3 53 5-60 146-199 (268)
63 PRK11153 metN DL-methionine tr 98.5 2.7E-07 5.8E-12 72.2 6.2 53 5-60 177-230 (343)
64 PRK03695 vitamin B12-transport 98.5 4.4E-07 9.6E-12 67.6 7.1 51 5-59 170-221 (248)
65 PRK13631 cbiO cobalt transport 98.5 2.6E-07 5.6E-12 71.8 5.9 52 5-60 213-265 (320)
66 COG3839 MalK ABC-type sugar tr 98.5 2.5E-07 5.4E-12 73.1 5.8 53 6-61 171-224 (338)
67 TIGR01188 drrA daunorubicin re 98.5 3E-07 6.6E-12 70.5 6.1 53 5-61 161-214 (302)
68 COG4138 BtuD ABC-type cobalami 98.5 9.5E-08 2.1E-12 70.7 3.1 71 7-85 171-245 (248)
69 COG3840 ThiQ ABC-type thiamine 98.5 2.6E-07 5.6E-12 68.5 5.4 46 5-50 166-212 (231)
70 cd03296 ABC_CysA_sulfate_impor 98.5 3.2E-07 6.9E-12 67.7 5.9 52 5-59 173-225 (239)
71 PRK15134 microcin C ABC transp 98.5 2.6E-07 5.7E-12 75.5 5.9 52 5-59 462-514 (529)
72 TIGR02142 modC_ABC molybdenum 98.5 3.6E-07 7.8E-12 71.8 6.2 53 5-60 168-221 (354)
73 PRK10070 glycine betaine trans 98.5 3.3E-07 7.2E-12 73.5 6.0 53 5-60 201-254 (400)
74 PRK14250 phosphate ABC transpo 98.5 4.4E-07 9.6E-12 67.2 6.1 52 5-59 168-220 (241)
75 TIGR02315 ABC_phnC phosphonate 98.5 3.7E-07 8E-12 67.2 5.7 51 5-58 182-233 (243)
76 PRK13641 cbiO cobalt transport 98.5 3.9E-07 8.5E-12 69.4 6.0 52 5-60 182-234 (287)
77 TIGR02770 nickel_nikD nickel i 98.4 5.1E-07 1.1E-11 66.3 6.3 53 5-60 162-215 (230)
78 PRK13650 cbiO cobalt transport 98.4 4.5E-07 9.9E-12 68.8 6.0 52 5-60 177-229 (279)
79 PRK11614 livF leucine/isoleuci 98.4 4.5E-07 9.8E-12 66.7 5.8 52 5-60 174-226 (237)
80 TIGR02769 nickel_nikE nickel i 98.4 4E-07 8.6E-12 68.4 5.6 53 5-60 187-240 (265)
81 COG1136 SalX ABC-type antimicr 98.4 4.4E-07 9.6E-12 68.1 5.8 40 5-45 179-219 (226)
82 PRK11300 livG leucine/isoleuci 98.4 5.7E-07 1.2E-11 66.8 6.4 53 5-60 190-243 (255)
83 cd03219 ABC_Mj1267_LivG_branch 98.4 4.6E-07 1E-11 66.5 5.8 50 5-58 180-230 (236)
84 PRK11831 putative ABC transpor 98.4 4.7E-07 1E-11 68.2 6.0 53 5-60 180-233 (269)
85 cd03258 ABC_MetN_methionine_tr 98.4 5.1E-07 1.1E-11 66.2 6.1 51 5-58 177-228 (233)
86 TIGR01288 nodI ATP-binding ABC 98.4 4.4E-07 9.4E-12 69.6 5.9 52 5-60 172-224 (303)
87 PRK13547 hmuV hemin importer A 98.4 1.2E-06 2.7E-11 66.5 8.3 52 5-59 191-243 (272)
88 PRK13645 cbiO cobalt transport 98.4 5E-07 1.1E-11 68.7 6.1 53 5-60 187-240 (289)
89 cd03265 ABC_DrrA DrrA is the A 98.4 5E-07 1.1E-11 65.8 5.8 45 5-49 168-213 (220)
90 PRK13548 hmuV hemin importer A 98.4 5.1E-07 1.1E-11 67.7 5.9 53 5-60 177-230 (258)
91 TIGR03740 galliderm_ABC gallid 98.4 6.8E-07 1.5E-11 65.2 6.4 45 5-50 161-206 (223)
92 TIGR03269 met_CoM_red_A2 methy 98.4 5.1E-07 1.1E-11 73.6 6.3 53 5-60 464-517 (520)
93 PRK13639 cbiO cobalt transport 98.4 4.8E-07 1E-11 68.5 5.8 52 5-60 174-226 (275)
94 PRK15134 microcin C ABC transp 98.4 4.2E-07 9.2E-12 74.3 5.8 52 5-59 193-245 (529)
95 cd03294 ABC_Pro_Gly_Bertaine T 98.4 6.1E-07 1.3E-11 67.7 6.3 53 5-60 197-250 (269)
96 PRK10771 thiQ thiamine transpo 98.4 6.7E-07 1.4E-11 65.7 6.3 53 5-60 166-219 (232)
97 cd03298 ABC_ThiQ_thiamine_tran 98.4 5.1E-07 1.1E-11 65.3 5.6 43 5-47 165-208 (211)
98 TIGR03410 urea_trans_UrtE urea 98.4 6E-07 1.3E-11 65.7 5.9 51 5-58 168-219 (230)
99 cd03301 ABC_MalK_N The N-termi 98.4 5.5E-07 1.2E-11 65.1 5.6 44 5-48 167-211 (213)
100 COG1134 TagH ABC-type polysacc 98.4 7.3E-07 1.6E-11 67.7 6.3 55 8-66 187-242 (249)
101 PRK10253 iron-enterobactin tra 98.4 7.3E-07 1.6E-11 67.0 6.3 53 5-60 180-233 (265)
102 PRK09984 phosphonate/organopho 98.4 6.8E-07 1.5E-11 66.9 6.1 51 5-58 189-240 (262)
103 PRK11701 phnK phosphonate C-P 98.4 6.8E-07 1.5E-11 66.7 6.0 52 5-59 188-240 (258)
104 TIGR03005 ectoine_ehuA ectoine 98.4 7.4E-07 1.6E-11 66.2 6.1 52 5-59 183-235 (252)
105 PRK10619 histidine/lysine/argi 98.4 6.9E-07 1.5E-11 66.6 5.9 51 5-59 189-240 (257)
106 COG4172 ABC-type uncharacteriz 98.4 5.2E-07 1.1E-11 73.4 5.5 53 5-60 463-516 (534)
107 cd03224 ABC_TM1139_LivF_branch 98.4 7.8E-07 1.7E-11 64.6 5.9 50 5-58 169-219 (222)
108 cd03259 ABC_Carb_Solutes_like 98.4 6.7E-07 1.5E-11 64.7 5.5 43 5-47 167-210 (213)
109 cd03297 ABC_ModC_molybdenum_tr 98.4 7.1E-07 1.5E-11 64.7 5.7 44 5-48 168-212 (214)
110 PRK10418 nikD nickel transport 98.4 8.2E-07 1.8E-11 66.2 6.0 53 5-60 177-230 (254)
111 cd03295 ABC_OpuCA_Osmoprotecti 98.4 9.5E-07 2.1E-11 65.3 6.2 52 5-59 172-224 (242)
112 PRK14258 phosphate ABC transpo 98.4 9.9E-07 2.1E-11 66.1 6.4 53 5-60 187-245 (261)
113 cd03257 ABC_NikE_OppD_transpor 98.4 7.6E-07 1.6E-11 64.8 5.5 43 5-47 182-225 (228)
114 PRK13638 cbiO cobalt transport 98.4 8.8E-07 1.9E-11 66.7 6.0 52 5-60 173-225 (271)
115 cd03260 ABC_PstB_phosphate_tra 98.4 6.8E-07 1.5E-11 65.3 5.2 43 5-49 178-221 (227)
116 TIGR01184 ntrCD nitrate transp 98.4 9.2E-07 2E-11 65.2 5.9 46 5-50 151-197 (230)
117 PRK14268 phosphate ABC transpo 98.4 9.2E-07 2E-11 66.1 5.9 51 5-60 191-242 (258)
118 PRK15112 antimicrobial peptide 98.4 8.5E-07 1.8E-11 66.8 5.8 53 5-60 186-239 (267)
119 PRK10575 iron-hydroxamate tran 98.4 9.2E-07 2E-11 66.4 5.9 53 5-60 184-237 (265)
120 PRK13546 teichoic acids export 98.4 1.3E-06 2.7E-11 66.2 6.7 60 5-68 180-240 (264)
121 COG1245 Predicted ATPase, RNas 98.4 1.4E-06 2.9E-11 71.8 7.2 72 5-77 250-325 (591)
122 TIGR03873 F420-0_ABC_ATP propo 98.4 2.7E-06 5.8E-11 63.4 8.3 52 5-60 174-226 (256)
123 PRK13633 cobalt transporter AT 98.4 8.6E-07 1.9E-11 67.2 5.6 53 5-61 181-234 (280)
124 COG4598 HisP ABC-type histidin 98.3 8E-07 1.7E-11 66.1 5.1 53 5-61 189-242 (256)
125 COG4525 TauB ABC-type taurine 98.3 1.3E-06 2.7E-11 65.6 6.2 52 5-56 169-220 (259)
126 PRK11264 putative amino-acid A 98.3 1.1E-06 2.4E-11 65.0 6.0 51 5-59 181-232 (250)
127 cd03218 ABC_YhbG The ABC trans 98.3 1.1E-06 2.4E-11 64.3 5.9 51 5-59 170-221 (232)
128 TIGR02323 CP_lyasePhnK phospho 98.3 1.3E-06 2.8E-11 64.9 6.0 52 5-59 185-237 (253)
129 PRK09493 glnQ glutamine ABC tr 98.3 1.3E-06 2.9E-11 64.3 5.8 51 5-59 173-224 (240)
130 PRK09544 znuC high-affinity zi 98.3 1.5E-06 3.3E-11 65.1 6.2 52 5-59 157-208 (251)
131 TIGR03269 met_CoM_red_A2 methy 98.3 1.3E-06 2.8E-11 71.2 6.3 54 5-61 205-259 (520)
132 PRK13640 cbiO cobalt transport 98.3 1.2E-06 2.6E-11 66.5 5.6 52 5-60 180-232 (282)
133 cd03299 ABC_ModC_like Archeal 98.3 1.8E-06 3.9E-11 63.7 6.3 53 5-60 166-219 (235)
134 PRK13649 cbiO cobalt transport 98.3 1.3E-06 2.9E-11 66.0 5.7 52 5-60 182-234 (280)
135 PRK10419 nikE nickel transport 98.3 1.4E-06 3E-11 65.8 5.6 53 5-60 188-241 (268)
136 TIGR03771 anch_rpt_ABC anchore 98.3 1.5E-06 3.2E-11 63.8 5.5 52 5-60 150-201 (223)
137 PRK14245 phosphate ABC transpo 98.3 1.6E-06 3.4E-11 64.4 5.7 51 5-60 183-234 (250)
138 PRK11231 fecE iron-dicitrate t 98.3 4.8E-06 1E-10 62.0 8.2 52 5-60 175-227 (255)
139 PRK14273 phosphate ABC transpo 98.3 1.9E-06 4.1E-11 64.1 6.0 51 5-60 187-238 (254)
140 PRK14242 phosphate transporter 98.3 1.6E-06 3.6E-11 64.3 5.6 50 5-59 186-236 (253)
141 PRK13642 cbiO cobalt transport 98.3 1.9E-06 4.1E-11 65.3 6.0 52 5-60 177-229 (277)
142 cd03235 ABC_Metallic_Cations A 98.3 2.1E-06 4.6E-11 62.1 5.9 43 5-48 169-211 (213)
143 PRK13549 xylose transporter AT 98.3 1.2E-06 2.6E-11 71.3 5.2 45 5-50 442-487 (506)
144 TIGR03864 PQQ_ABC_ATP ABC tran 98.3 2.3E-06 5E-11 63.0 6.1 52 5-60 169-221 (236)
145 cd03300 ABC_PotA_N PotA is an 98.3 2.5E-06 5.4E-11 62.8 6.2 53 5-60 167-220 (232)
146 TIGR03522 GldA_ABC_ATP gliding 98.3 1.8E-06 3.8E-11 66.3 5.6 51 5-60 170-221 (301)
147 cd03293 ABC_NrtD_SsuB_transpor 98.3 2.4E-06 5.1E-11 62.3 6.0 45 5-49 168-215 (220)
148 PRK10895 lipopolysaccharide AB 98.3 2.4E-06 5.1E-11 63.0 6.0 52 5-60 174-226 (241)
149 TIGR01277 thiQ thiamine ABC tr 98.3 2.3E-06 4.9E-11 62.2 5.8 46 5-50 165-211 (213)
150 TIGR03411 urea_trans_UrtD urea 98.3 2.3E-06 5.1E-11 63.0 5.9 50 5-59 180-230 (242)
151 cd03268 ABC_BcrA_bacitracin_re 98.3 2E-06 4.4E-11 62.0 5.4 43 5-48 163-206 (208)
152 PRK14267 phosphate ABC transpo 98.3 2.6E-06 5.6E-11 63.3 6.1 50 5-59 186-236 (253)
153 PRK11247 ssuB aliphatic sulfon 98.3 2.1E-06 4.5E-11 64.8 5.6 46 5-50 170-216 (257)
154 PRK13545 tagH teichoic acids e 98.2 2.7E-06 5.8E-11 70.9 6.7 61 5-69 180-241 (549)
155 TIGR00960 3a0501s02 Type II (G 98.2 2.9E-06 6.3E-11 61.5 6.1 40 5-45 175-215 (216)
156 PRK13635 cbiO cobalt transport 98.2 2.1E-06 4.6E-11 65.2 5.6 52 5-60 177-229 (279)
157 PRK09700 D-allose transporter 98.2 1.9E-06 4.2E-11 70.1 5.6 50 5-58 182-232 (510)
158 PRK14239 phosphate transporter 98.2 2.7E-06 5.9E-11 63.0 6.0 50 5-59 185-235 (252)
159 TIGR01978 sufC FeS assembly AT 98.2 2.5E-06 5.5E-11 62.7 5.7 49 5-57 181-231 (243)
160 TIGR00972 3a0107s01c2 phosphat 98.2 2.8E-06 6E-11 63.0 5.9 50 5-59 181-231 (247)
161 PRK14257 phosphate ABC transpo 98.2 2.3E-06 4.9E-11 66.9 5.5 50 6-60 263-313 (329)
162 PRK14274 phosphate ABC transpo 98.2 2.7E-06 5.8E-11 63.6 5.6 51 5-60 192-243 (259)
163 PRK14262 phosphate ABC transpo 98.2 3E-06 6.4E-11 62.8 5.9 51 5-60 183-234 (250)
164 PRK11288 araG L-arabinose tran 98.2 2E-06 4.3E-11 70.0 5.3 45 5-50 433-478 (501)
165 COG4586 ABC-type uncharacteriz 98.2 2.1E-06 4.6E-11 66.7 5.2 54 6-62 194-248 (325)
166 cd03267 ABC_NatA_like Similar 98.2 2.6E-06 5.7E-11 63.0 5.5 44 5-48 190-234 (236)
167 PRK14269 phosphate ABC transpo 98.2 3E-06 6.5E-11 62.9 5.8 50 5-59 179-229 (246)
168 cd03225 ABC_cobalt_CbiO_domain 98.2 3.7E-06 7.9E-11 60.7 6.1 38 5-43 171-208 (211)
169 PRK14244 phosphate ABC transpo 98.2 2.9E-06 6.4E-11 63.0 5.7 50 5-59 186-236 (251)
170 PRK13648 cbiO cobalt transport 98.2 2.2E-06 4.9E-11 64.5 5.1 52 5-60 179-231 (269)
171 cd03226 ABC_cobalt_CbiO_domain 98.2 3.2E-06 6.9E-11 60.9 5.7 40 5-45 163-203 (205)
172 PRK14256 phosphate ABC transpo 98.2 3.4E-06 7.3E-11 62.7 5.9 51 5-60 185-236 (252)
173 TIGR00968 3a0106s01 sulfate AB 98.2 3.7E-06 8.1E-11 62.1 6.0 53 5-60 167-220 (237)
174 PRK15439 autoinducer 2 ABC tra 98.2 2.3E-06 5E-11 69.9 5.3 51 5-59 440-491 (510)
175 cd03266 ABC_NatA_sodium_export 98.2 3.1E-06 6.7E-11 61.4 5.5 42 5-47 173-215 (218)
176 PRK14247 phosphate ABC transpo 98.2 3.8E-06 8.3E-11 62.3 6.0 50 5-59 183-233 (250)
177 PRK14248 phosphate ABC transpo 98.2 3.4E-06 7.3E-11 63.4 5.8 50 5-59 201-251 (268)
178 PRK14272 phosphate ABC transpo 98.2 3.7E-06 8.1E-11 62.3 5.9 51 5-60 185-236 (252)
179 PRK14270 phosphate ABC transpo 98.2 4E-06 8.7E-11 62.2 6.1 50 5-59 184-234 (251)
180 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.2 4E-06 8.6E-11 60.8 5.9 40 5-45 177-217 (218)
181 PRK10938 putative molybdenum t 98.2 3.1E-06 6.6E-11 68.5 5.7 51 5-59 172-223 (490)
182 PRK15439 autoinducer 2 ABC tra 98.2 3.1E-06 6.7E-11 69.1 5.7 51 5-59 177-228 (510)
183 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.2 3.6E-06 7.8E-11 61.9 5.4 43 5-48 179-222 (224)
184 PRK13644 cbiO cobalt transport 98.2 3.5E-06 7.6E-11 63.8 5.5 51 5-60 173-224 (274)
185 PRK14251 phosphate ABC transpo 98.2 4.5E-06 9.7E-11 61.9 5.9 50 5-59 184-234 (251)
186 PRK10762 D-ribose transporter 98.2 3.4E-06 7.4E-11 68.6 5.6 45 5-50 178-223 (501)
187 PRK13549 xylose transporter AT 98.2 3.4E-06 7.5E-11 68.6 5.7 50 5-58 180-230 (506)
188 PRK14253 phosphate ABC transpo 98.2 4.4E-06 9.6E-11 61.9 5.7 50 5-59 182-232 (249)
189 TIGR02673 FtsE cell division A 98.2 5.4E-06 1.2E-10 59.9 6.0 38 5-43 174-211 (214)
190 COG4148 ModC ABC-type molybdat 98.2 3.1E-06 6.8E-11 66.1 5.0 46 5-50 165-211 (352)
191 PRK14235 phosphate transporter 98.2 4.6E-06 1E-10 62.8 5.8 50 5-59 200-250 (267)
192 PRK10762 D-ribose transporter 98.2 3.4E-06 7.4E-11 68.6 5.4 45 5-50 432-477 (501)
193 PRK15056 manganese/iron transp 98.2 5E-06 1.1E-10 62.7 5.9 51 5-59 179-229 (272)
194 PRK14238 phosphate transporter 98.2 4.8E-06 1E-10 62.9 5.8 50 5-59 204-254 (271)
195 PRK14259 phosphate ABC transpo 98.1 7.7E-06 1.7E-10 61.7 6.8 54 5-60 191-253 (269)
196 PRK14240 phosphate transporter 98.1 4.8E-06 1.1E-10 61.7 5.6 50 5-59 183-233 (250)
197 cd03214 ABC_Iron-Siderophores_ 98.1 5.4E-06 1.2E-10 58.9 5.6 42 5-46 134-176 (180)
198 cd03263 ABC_subfamily_A The AB 98.1 4.7E-06 1E-10 60.5 5.3 48 5-57 170-218 (220)
199 PRK11248 tauB taurine transpor 98.1 5.7E-06 1.2E-10 62.0 5.9 39 5-43 165-203 (255)
200 cd03230 ABC_DR_subfamily_A Thi 98.1 7.3E-06 1.6E-10 57.9 6.1 40 5-45 132-172 (173)
201 cd03269 ABC_putative_ATPase Th 98.1 4.9E-06 1.1E-10 60.1 5.2 42 5-47 165-207 (210)
202 PRK14249 phosphate ABC transpo 98.1 6.7E-06 1.4E-10 61.1 6.0 51 5-60 184-235 (251)
203 CHL00131 ycf16 sulfate ABC tra 98.1 6.3E-06 1.4E-10 61.1 5.9 48 5-56 188-237 (252)
204 cd03270 ABC_UvrA_I The excisio 98.1 4.8E-06 1E-10 61.5 5.1 37 5-43 176-212 (226)
205 PRK11124 artP arginine transpo 98.1 6.3E-06 1.4E-10 60.8 5.7 50 5-58 178-228 (242)
206 PRK14237 phosphate transporter 98.1 6E-06 1.3E-10 62.1 5.7 50 5-59 200-250 (267)
207 PRK14255 phosphate ABC transpo 98.1 6.9E-06 1.5E-10 60.9 6.0 50 5-59 185-235 (252)
208 PRK14236 phosphate transporter 98.1 6.5E-06 1.4E-10 62.1 5.8 50 5-59 205-255 (272)
209 PRK10744 pstB phosphate transp 98.1 7.2E-06 1.6E-10 61.4 6.0 50 5-59 193-243 (260)
210 PRK10982 galactose/methyl gala 98.1 5.6E-06 1.2E-10 67.1 5.7 45 5-50 171-216 (491)
211 PRK14260 phosphate ABC transpo 98.1 7E-06 1.5E-10 61.4 5.9 51 5-60 187-243 (259)
212 PRK14252 phosphate ABC transpo 98.1 8.1E-06 1.8E-10 61.2 6.2 50 5-59 198-248 (265)
213 TIGR02633 xylG D-xylose ABC tr 98.1 6.1E-06 1.3E-10 66.9 5.9 45 5-50 178-223 (500)
214 COG0410 LivF ABC-type branched 98.1 6.3E-06 1.4E-10 62.2 5.5 53 5-60 173-226 (237)
215 COG3845 ABC-type uncharacteriz 98.1 8.3E-06 1.8E-10 67.1 6.6 57 4-61 176-236 (501)
216 PRK14275 phosphate ABC transpo 98.1 7.2E-06 1.6E-10 62.5 5.9 50 5-59 219-269 (286)
217 cd03216 ABC_Carb_Monos_I This 98.1 6.7E-06 1.5E-10 57.8 5.3 41 5-46 119-160 (163)
218 COG4152 ABC-type uncharacteriz 98.1 3.3E-06 7.1E-11 64.9 3.9 52 7-62 169-221 (300)
219 PRK10908 cell division protein 98.1 7.2E-06 1.6E-10 59.8 5.6 41 5-46 174-215 (222)
220 cd03289 ABCC_CFTR2 The CFTR su 98.1 6.5E-06 1.4E-10 62.9 5.6 50 6-61 176-226 (275)
221 PRK14243 phosphate transporter 98.1 7.8E-06 1.7E-10 61.5 5.9 51 5-60 188-248 (264)
222 PRK09580 sufC cysteine desulfu 98.1 9.6E-06 2.1E-10 59.9 6.3 50 5-58 182-233 (248)
223 cd03292 ABC_FtsE_transporter F 98.1 8.9E-06 1.9E-10 58.7 6.0 40 5-45 173-213 (214)
224 cd03229 ABC_Class3 This class 98.1 9.7E-06 2.1E-10 57.5 6.1 39 5-43 137-175 (178)
225 cd03264 ABC_drug_resistance_li 98.1 5.6E-06 1.2E-10 59.8 4.9 42 5-48 167-209 (211)
226 cd03262 ABC_HisP_GlnQ_permease 98.1 9.5E-06 2.1E-10 58.5 6.0 40 5-45 172-212 (213)
227 PRK14261 phosphate ABC transpo 98.1 8.6E-06 1.9E-10 60.5 5.8 50 5-59 186-236 (253)
228 PRK14271 phosphate ABC transpo 98.1 7.8E-06 1.7E-10 62.0 5.7 51 5-60 200-251 (276)
229 cd03215 ABC_Carb_Monos_II This 98.1 1E-05 2.2E-10 57.6 5.9 40 5-45 141-181 (182)
230 PRK10982 galactose/methyl gala 98.1 6.3E-06 1.4E-10 66.8 5.4 45 5-50 428-473 (491)
231 PRK13409 putative ATPase RIL; 98.1 1.3E-05 2.9E-10 67.0 7.5 60 5-66 249-308 (590)
232 COG4107 PhnK ABC-type phosphon 98.1 6E-06 1.3E-10 61.2 4.8 45 6-50 189-234 (258)
233 TIGR01257 rim_protein retinal- 98.1 7.5E-06 1.6E-10 76.8 6.4 54 5-62 2107-2161(2272)
234 PRK09700 D-allose transporter 98.1 7.3E-06 1.6E-10 66.7 5.6 44 5-49 446-490 (510)
235 cd03251 ABCC_MsbA MsbA is an e 98.1 9.3E-06 2E-10 59.4 5.7 50 5-60 175-225 (234)
236 PRK13632 cbiO cobalt transport 98.1 8.4E-06 1.8E-10 61.5 5.5 52 5-60 179-231 (271)
237 TIGR02633 xylG D-xylose ABC tr 98.1 7.2E-06 1.6E-10 66.5 5.4 45 5-50 440-485 (500)
238 PRK14241 phosphate transporter 98.1 1.1E-05 2.4E-10 60.2 6.1 51 5-60 185-242 (258)
239 TIGR02211 LolD_lipo_ex lipopro 98.0 1E-05 2.2E-10 58.7 5.6 40 5-45 178-218 (221)
240 cd03217 ABC_FeS_Assembly ABC-t 98.0 1E-05 2.3E-10 58.4 5.6 44 5-49 141-186 (200)
241 PRK14263 phosphate ABC transpo 98.0 1.1E-05 2.4E-10 60.7 5.9 51 5-60 186-245 (261)
242 cd03246 ABCC_Protease_Secretio 98.0 1.3E-05 2.8E-10 56.6 5.9 39 5-45 133-172 (173)
243 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.0 1.1E-05 2.3E-10 59.3 5.6 50 5-60 176-226 (238)
244 cd03252 ABCC_Hemolysin The ABC 98.0 1.1E-05 2.3E-10 59.3 5.5 50 5-60 175-225 (237)
245 PRK14266 phosphate ABC transpo 98.0 1.3E-05 2.8E-10 59.4 5.9 50 5-59 183-233 (250)
246 PRK14265 phosphate ABC transpo 98.0 1.6E-05 3.5E-10 60.2 6.2 50 5-59 198-257 (274)
247 COG1129 MglA ABC-type sugar tr 98.0 1.1E-05 2.3E-10 66.7 5.5 56 5-61 182-241 (500)
248 cd03213 ABCG_EPDR ABCG transpo 98.0 1.1E-05 2.3E-10 58.1 4.8 42 5-47 148-191 (194)
249 PRK14246 phosphate ABC transpo 98.0 1.6E-05 3.5E-10 59.7 5.8 51 5-60 190-241 (257)
250 PRK11288 araG L-arabinose tran 98.0 1.3E-05 2.8E-10 65.2 5.5 44 5-49 177-221 (501)
251 PRK10584 putative ABC transpor 98.0 1.7E-05 3.6E-10 58.0 5.5 41 5-46 183-224 (228)
252 cd03234 ABCG_White The White s 98.0 1.3E-05 2.8E-10 58.7 4.8 43 5-48 180-224 (226)
253 COG1101 PhnK ABC-type uncharac 97.9 3.7E-05 8.1E-10 58.3 6.8 44 5-48 185-229 (263)
254 PRK11629 lolD lipoprotein tran 97.9 2.4E-05 5.2E-10 57.5 5.6 45 5-50 182-227 (233)
255 cd03253 ABCC_ATM1_transporter 97.9 2.3E-05 5E-10 57.4 5.3 50 5-60 174-224 (236)
256 TIGR01257 rim_protein retinal- 97.9 2.6E-05 5.7E-10 73.3 6.6 62 5-74 1098-1160(2272)
257 cd03238 ABC_UvrA The excision 97.9 4.1E-05 8.8E-10 55.1 6.2 42 5-48 126-168 (176)
258 cd03254 ABCC_Glucan_exporter_l 97.9 2.8E-05 6.1E-10 56.7 5.5 49 5-59 176-225 (229)
259 cd03245 ABCC_bacteriocin_expor 97.9 2E-05 4.4E-10 57.1 4.6 40 5-47 177-217 (220)
260 PRK14264 phosphate ABC transpo 97.9 2.7E-05 5.8E-10 59.9 5.5 51 5-60 237-289 (305)
261 PLN03211 ABC transporter G-25; 97.9 2.5E-05 5.4E-10 66.2 5.7 52 5-60 243-296 (659)
262 COG1129 MglA ABC-type sugar tr 97.9 3.3E-05 7.1E-10 63.9 6.2 43 5-48 438-481 (500)
263 TIGR02982 heterocyst_DevA ABC 97.9 3.7E-05 8E-10 56.0 5.6 38 5-43 178-215 (220)
264 cd03288 ABCC_SUR2 The SUR doma 97.9 2.9E-05 6.3E-10 58.0 5.1 50 5-60 193-243 (257)
265 PRK14254 phosphate ABC transpo 97.8 3.6E-05 7.8E-10 58.7 5.7 50 5-59 217-268 (285)
266 PRK10938 putative molybdenum t 97.8 3.7E-05 8.1E-10 62.2 5.2 45 5-49 438-484 (490)
267 COG1137 YhbG ABC-type (unclass 97.8 5.4E-05 1.2E-09 56.9 5.3 53 4-60 175-228 (243)
268 cd03369 ABCC_NFT1 Domain 2 of 97.8 4.7E-05 1E-09 54.9 4.8 42 5-49 162-204 (207)
269 cd03232 ABC_PDR_domain2 The pl 97.8 5.6E-05 1.2E-09 54.2 5.2 38 5-43 145-183 (192)
270 COG4988 CydD ABC-type transpor 97.7 7.8E-05 1.7E-09 62.3 6.5 50 5-60 493-543 (559)
271 PRK15177 Vi polysaccharide exp 97.7 5.6E-05 1.2E-09 55.3 5.1 50 6-60 142-192 (213)
272 COG1117 PstB ABC-type phosphat 97.7 2.5E-05 5.3E-10 59.1 3.1 51 5-60 186-237 (253)
273 cd00267 ABC_ATPase ABC (ATP-bi 97.7 0.00011 2.4E-09 50.8 6.1 38 5-43 117-154 (157)
274 cd03279 ABC_sbcCD SbcCD and ot 97.7 9E-05 1.9E-09 54.0 5.9 38 5-43 170-207 (213)
275 cd03247 ABCC_cytochrome_bd The 97.7 6.3E-05 1.4E-09 53.2 4.6 40 5-47 135-175 (178)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 0.00011 2.4E-09 50.7 5.6 34 6-43 108-141 (144)
277 TIGR00956 3a01205 Pleiotropic 97.7 9E-05 2E-09 67.3 6.4 53 5-60 246-300 (1394)
278 COG2884 FtsE Predicted ATPase 97.7 7E-05 1.5E-09 55.8 4.7 43 5-48 174-217 (223)
279 cd03271 ABC_UvrA_II The excisi 97.7 0.0001 2.2E-09 56.2 5.7 36 5-42 209-244 (261)
280 cd03228 ABCC_MRP_Like The MRP 97.7 0.00011 2.3E-09 51.8 5.4 36 5-43 133-168 (171)
281 PRK13543 cytochrome c biogenes 97.7 9E-05 2E-09 53.9 5.1 38 5-43 174-211 (214)
282 PRK10247 putative ABC transpor 97.7 0.0001 2.2E-09 54.1 5.4 38 5-43 174-211 (225)
283 TIGR00955 3a01204 The Eye Pigm 97.7 8.4E-05 1.8E-09 62.3 5.6 52 5-60 203-256 (617)
284 TIGR02324 CP_lyasePhnL phospho 97.7 9.4E-05 2E-09 53.9 5.2 38 5-43 186-223 (224)
285 COG4170 SapD ABC-type antimicr 97.6 9.3E-05 2E-09 56.4 5.0 53 5-60 195-248 (330)
286 PRK15064 ABC transporter ATP-b 97.6 0.00011 2.4E-09 60.2 5.8 48 6-60 476-525 (530)
287 cd03248 ABCC_TAP TAP, the Tran 97.6 0.00012 2.7E-09 53.3 5.4 38 5-45 187-225 (226)
288 COG4181 Predicted ABC-type tra 97.6 9.3E-05 2E-09 54.7 4.6 42 5-47 183-225 (228)
289 COG4674 Uncharacterized ABC-ty 97.6 5E-05 1.1E-09 57.0 3.2 43 6-50 185-228 (249)
290 TIGR00630 uvra excinuclease AB 97.6 0.00011 2.5E-09 64.5 5.8 50 5-59 526-582 (924)
291 PRK15064 ABC transporter ATP-b 97.6 0.00016 3.4E-09 59.3 6.1 40 17-59 200-241 (530)
292 PRK00349 uvrA excinuclease ABC 97.6 0.00013 2.8E-09 64.3 5.8 51 5-60 528-585 (943)
293 PLN03140 ABC transporter G fam 97.6 0.00015 3.1E-09 66.4 6.2 62 5-73 373-436 (1470)
294 cd03244 ABCC_MRP_domain2 Domai 97.5 0.00016 3.6E-09 52.4 5.1 42 5-49 176-218 (221)
295 cd03233 ABC_PDR_domain1 The pl 97.5 0.00027 5.9E-09 51.1 5.6 43 5-47 155-199 (202)
296 cd03291 ABCC_CFTR1 The CFTR su 97.5 0.00031 6.8E-09 53.8 5.8 48 7-60 198-247 (282)
297 KOG0059|consensus 97.5 0.00016 3.4E-09 63.2 4.5 53 6-62 736-789 (885)
298 cd03250 ABCC_MRP_domain1 Domai 97.4 0.00033 7.2E-09 50.4 5.2 36 6-43 165-201 (204)
299 PRK10636 putative ABC transpor 97.4 0.00032 6.9E-09 59.1 5.8 47 5-58 467-515 (638)
300 PRK11176 lipid transporter ATP 97.4 0.00031 6.8E-09 57.8 5.6 50 5-60 517-567 (582)
301 PRK00635 excinuclease ABC subu 97.4 0.00032 6.8E-09 65.3 6.0 51 5-60 849-906 (1809)
302 COG4987 CydC ABC-type transpor 97.4 0.00022 4.7E-09 59.6 4.5 49 6-60 512-561 (573)
303 PRK10790 putative multidrug tr 97.4 0.00039 8.6E-09 57.5 5.9 50 5-60 513-563 (592)
304 PRK00349 uvrA excinuclease ABC 97.4 0.0004 8.8E-09 61.2 5.9 51 5-60 870-927 (943)
305 TIGR03375 type_I_sec_LssB type 97.4 0.00042 9.1E-09 58.5 5.8 49 6-60 639-688 (694)
306 TIGR03608 L_ocin_972_ABC putat 97.3 0.00047 1E-08 49.4 5.2 36 5-42 171-206 (206)
307 PRK11819 putative ABC transpor 97.3 0.00061 1.3E-08 56.3 6.3 37 7-47 202-239 (556)
308 TIGR01842 type_I_sec_PrtD type 97.3 0.00049 1.1E-08 56.5 5.7 50 6-60 492-542 (544)
309 TIGR01192 chvA glucan exporter 97.3 0.00076 1.7E-08 56.1 6.9 60 6-71 509-572 (585)
310 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.00043 9.4E-09 58.5 5.5 39 18-60 661-700 (710)
311 cd03223 ABCD_peroxisomal_ALDP 97.3 0.00065 1.4E-08 47.8 5.6 34 6-44 129-162 (166)
312 COG4161 ArtP ABC-type arginine 97.3 0.00037 8.1E-09 51.3 4.3 44 6-50 179-223 (242)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 97.3 0.00066 1.4E-08 56.0 6.3 38 6-47 199-237 (552)
314 PRK11174 cysteine/glutathione 97.3 0.0006 1.3E-08 56.3 5.9 49 6-60 523-572 (588)
315 TIGR01846 type_I_sec_HlyB type 97.3 0.00055 1.2E-08 57.8 5.7 50 5-60 630-680 (694)
316 TIGR00630 uvra excinuclease AB 97.3 0.00057 1.2E-08 60.2 5.7 49 5-58 868-923 (924)
317 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.00052 1.1E-08 57.8 5.3 47 6-60 626-673 (686)
318 PRK13657 cyclic beta-1,2-gluca 97.2 0.00072 1.6E-08 56.0 5.9 49 6-60 509-558 (588)
319 KOG0063|consensus 97.2 0.0008 1.7E-08 55.6 5.7 90 9-105 254-347 (592)
320 COG1132 MdlB ABC-type multidru 97.2 0.00076 1.6E-08 55.6 5.7 50 6-61 503-553 (567)
321 PRK11160 cysteine/glutathione 97.2 0.00091 2E-08 55.5 6.0 49 6-60 513-562 (574)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 97.2 0.0014 2.9E-08 54.2 7.0 35 5-43 480-514 (552)
323 PRK10535 macrolide transporter 97.2 0.00075 1.6E-08 57.0 5.5 44 5-50 181-225 (648)
324 TIGR01193 bacteriocin_ABC ABC- 97.2 0.00079 1.7E-08 57.0 5.6 48 6-60 649-697 (708)
325 PRK10789 putative multidrug tr 97.2 0.00079 1.7E-08 55.7 5.5 49 6-60 489-538 (569)
326 TIGR02203 MsbA_lipidA lipid A 97.2 0.00083 1.8E-08 55.1 5.5 49 6-60 507-556 (571)
327 PRK10636 putative ABC transpor 97.2 0.0012 2.6E-08 55.7 6.5 37 11-47 188-225 (638)
328 PRK00635 excinuclease ABC subu 97.2 0.00081 1.8E-08 62.6 5.8 37 5-43 515-551 (1809)
329 cd03290 ABCC_SUR1_N The SUR do 97.1 0.0012 2.7E-08 47.8 5.7 36 6-43 178-215 (218)
330 cd03275 ABC_SMC1_euk Eukaryoti 97.1 0.0011 2.3E-08 49.5 5.3 37 5-43 196-232 (247)
331 TIGR00956 3a01205 Pleiotropic 97.1 0.00082 1.8E-08 61.3 5.4 45 5-50 939-986 (1394)
332 TIGR00958 3a01208 Conjugate Tr 97.1 0.00096 2.1E-08 56.8 5.5 40 17-60 662-702 (711)
333 PRK11147 ABC transporter ATPas 97.1 0.0014 3E-08 55.2 6.4 29 19-47 203-232 (635)
334 PLN03232 ABC transporter C fam 97.1 0.00086 1.9E-08 61.4 5.5 49 6-60 1409-1458(1495)
335 PLN03130 ABC transporter C fam 97.1 0.00098 2.1E-08 61.6 5.7 49 6-60 1412-1461(1622)
336 TIGR02204 MsbA_rel ABC transpo 97.1 0.0011 2.4E-08 54.4 5.5 50 5-60 513-563 (576)
337 PLN03073 ABC transporter F fam 97.1 0.0015 3.4E-08 56.0 6.5 30 18-47 390-420 (718)
338 COG2274 SunT ABC-type bacterio 97.1 0.0011 2.4E-08 57.0 5.5 50 6-61 647-697 (709)
339 PLN03073 ABC transporter F fam 97.1 0.0017 3.6E-08 55.8 6.5 29 19-47 674-703 (718)
340 COG4167 SapF ABC-type antimicr 97.0 0.0017 3.7E-08 48.7 5.5 53 5-60 186-239 (267)
341 cd03278 ABC_SMC_barmotin Barmo 97.0 0.0014 3.1E-08 47.5 4.8 36 5-43 154-189 (197)
342 TIGR00957 MRP_assoc_pro multi 97.0 0.0013 2.8E-08 60.4 5.5 49 6-60 1459-1508(1522)
343 PRK13538 cytochrome c biogenes 96.9 0.0017 3.8E-08 46.7 5.0 37 5-42 166-202 (204)
344 cd03240 ABC_Rad50 The catalyti 96.9 0.0021 4.5E-08 46.8 5.3 37 6-43 160-196 (204)
345 TIGR01271 CFTR_protein cystic 96.9 0.0016 3.5E-08 59.7 5.6 49 6-60 1391-1440(1490)
346 PRK11819 putative ABC transpor 96.9 0.0023 5E-08 53.0 6.1 35 5-43 482-516 (556)
347 PTZ00265 multidrug resistance 96.9 0.0027 5.8E-08 58.3 6.9 39 5-44 616-655 (1466)
348 cd03276 ABC_SMC6_euk Eukaryoti 96.8 0.0014 3E-08 47.6 3.5 40 6-46 151-193 (198)
349 PTZ00243 ABC transporter; Prov 96.8 0.0022 4.8E-08 59.1 5.4 49 6-60 1484-1533(1560)
350 cd03231 ABC_CcmA_heme_exporter 96.7 0.0034 7.4E-08 45.2 4.6 37 5-42 162-198 (201)
351 COG3845 ABC-type uncharacteriz 96.6 0.0036 7.9E-08 51.8 5.1 42 7-49 442-484 (501)
352 PRK11147 ABC transporter ATPas 96.6 0.0051 1.1E-07 51.8 6.0 32 16-47 484-517 (635)
353 PLN03140 ABC transporter G fam 96.6 0.003 6.5E-08 58.1 4.7 45 5-50 1056-1103(1470)
354 TIGR01271 CFTR_protein cystic 96.6 0.0042 9.1E-08 57.1 5.5 39 18-60 597-636 (1490)
355 TIGR00957 MRP_assoc_pro multi 96.6 0.0043 9.3E-08 57.1 5.5 39 18-60 811-850 (1522)
356 TIGR00618 sbcc exonuclease Sbc 96.6 0.0062 1.4E-07 54.0 6.4 40 4-44 996-1035(1042)
357 KOG0055|consensus 96.5 0.0045 9.7E-08 55.9 5.1 50 6-61 527-577 (1228)
358 TIGR01194 cyc_pep_trnsptr cycl 96.3 0.0075 1.6E-07 49.9 5.2 30 17-47 519-549 (555)
359 PRK10522 multidrug transporter 96.3 0.0082 1.8E-07 49.5 5.3 42 6-48 487-529 (547)
360 cd03277 ABC_SMC5_euk Eukaryoti 96.3 0.0056 1.2E-07 45.0 3.8 39 5-43 167-208 (213)
361 PRK13539 cytochrome c biogenes 96.2 0.0085 1.8E-07 43.3 4.4 36 5-43 164-199 (207)
362 cd03227 ABC_Class2 ABC-type Cl 96.2 0.012 2.6E-07 41.1 5.0 37 5-43 118-154 (162)
363 cd03239 ABC_SMC_head The struc 96.1 0.015 3.3E-07 41.6 5.4 38 5-44 135-172 (178)
364 PTZ00243 ABC transporter; Prov 96.1 0.011 2.4E-07 54.7 5.8 39 18-60 831-870 (1560)
365 TIGR00954 3a01203 Peroxysomal 96.1 0.014 3E-07 49.5 5.9 31 14-45 624-654 (659)
366 TIGR00634 recN DNA repair prot 96.0 0.013 2.9E-07 48.7 5.4 36 5-43 481-516 (563)
367 PTZ00265 multidrug resistance 96.0 0.016 3.4E-07 53.5 6.1 52 6-60 1396-1452(1466)
368 KOG0057|consensus 96.0 0.014 3E-07 49.2 5.2 50 5-60 524-574 (591)
369 cd03274 ABC_SMC4_euk Eukaryoti 95.9 0.019 4.1E-07 42.1 5.2 36 5-43 168-203 (212)
370 cd03272 ABC_SMC3_euk Eukaryoti 95.9 0.02 4.4E-07 42.0 5.1 36 5-43 199-234 (243)
371 cd03241 ABC_RecN RecN ATPase i 95.8 0.021 4.7E-07 43.2 5.4 40 5-47 211-251 (276)
372 KOG0061|consensus 95.8 0.012 2.5E-07 49.9 4.0 64 4-75 206-271 (613)
373 PLN03232 ABC transporter C fam 95.7 0.02 4.4E-07 52.7 5.3 39 18-60 789-828 (1495)
374 PLN03130 ABC transporter C fam 95.5 0.03 6.6E-07 52.1 5.8 39 18-60 789-828 (1622)
375 cd03273 ABC_SMC2_euk Eukaryoti 95.5 0.031 6.7E-07 41.5 4.9 36 5-43 207-242 (251)
376 KOG0054|consensus 95.5 0.017 3.6E-07 53.1 4.0 40 18-61 692-732 (1381)
377 COG0178 UvrA Excinuclease ATPa 95.4 0.022 4.7E-07 50.1 4.5 54 5-60 862-919 (935)
378 TIGR02857 CydD thiol reductant 95.3 0.034 7.5E-07 45.4 5.1 35 5-42 495-529 (529)
379 COG0396 sufC Cysteine desulfur 95.2 0.073 1.6E-06 40.7 6.1 52 4-60 180-233 (251)
380 COG0488 Uup ATPase components 95.1 0.058 1.3E-06 45.1 5.8 37 8-44 475-511 (530)
381 TIGR02858 spore_III_AA stage I 95.0 0.04 8.7E-07 42.3 4.4 46 7-58 209-267 (270)
382 COG0488 Uup ATPase components 94.9 0.05 1.1E-06 45.5 4.9 44 6-49 187-231 (530)
383 cd01124 KaiC KaiC is a circadi 94.8 0.032 6.8E-07 38.9 3.0 38 6-44 118-164 (187)
384 PRK03918 chromosome segregatio 94.6 0.098 2.1E-06 45.1 6.2 36 6-43 832-867 (880)
385 COG1119 ModF ABC-type molybden 94.6 0.061 1.3E-06 41.3 4.3 47 4-50 207-255 (257)
386 COG4618 ArpD ABC-type protease 94.5 0.091 2E-06 44.2 5.5 50 6-60 510-560 (580)
387 cd03285 ABC_MSH2_euk MutS2 hom 94.5 0.042 9E-07 40.7 3.2 38 10-48 134-172 (222)
388 PRK10869 recombination and rep 94.4 0.084 1.8E-06 44.2 5.1 37 5-44 471-507 (553)
389 COG0178 UvrA Excinuclease ATPa 94.4 0.14 3E-06 45.2 6.5 55 5-61 520-578 (935)
390 cd03280 ABC_MutS2 MutS2 homolo 94.2 0.045 9.7E-07 39.4 2.8 38 9-48 132-170 (200)
391 COG4619 ABC-type uncharacteriz 94.1 0.14 3.1E-06 38.0 5.3 43 5-47 170-213 (223)
392 PRK02224 chromosome segregatio 93.9 0.15 3.3E-06 44.1 6.0 41 5-47 830-871 (880)
393 PRK13540 cytochrome c biogenes 93.9 0.056 1.2E-06 38.7 2.8 34 5-40 164-197 (200)
394 KOG0054|consensus 93.8 0.084 1.8E-06 48.7 4.2 40 18-61 1323-1363(1381)
395 TIGR01189 ccmA heme ABC export 93.3 0.12 2.5E-06 36.9 3.6 34 5-41 164-197 (198)
396 KOG0062|consensus 92.8 0.23 5E-06 41.9 5.1 29 19-47 529-558 (582)
397 PRK01156 chromosome segregatio 92.8 0.29 6.3E-06 42.7 5.9 37 6-43 845-883 (895)
398 PRK13541 cytochrome c biogenes 92.7 0.12 2.6E-06 36.8 2.9 33 5-39 160-192 (195)
399 PRK07721 fliI flagellum-specif 92.6 0.09 1.9E-06 43.0 2.4 44 5-50 286-336 (438)
400 TIGR02655 circ_KaiC circadian 92.1 0.16 3.5E-06 41.6 3.3 37 6-43 145-190 (484)
401 PRK13695 putative NTPase; Prov 92.1 0.2 4.4E-06 35.0 3.4 57 6-67 114-170 (174)
402 cd03283 ABC_MutS-like MutS-lik 91.9 0.4 8.6E-06 34.8 4.9 33 9-42 129-163 (199)
403 PHA02562 46 endonuclease subun 91.7 0.21 4.6E-06 40.9 3.6 35 5-43 516-550 (562)
404 PRK10246 exonuclease subunit S 91.4 0.51 1.1E-05 42.3 5.9 39 4-43 993-1031(1047)
405 TIGR03880 KaiC_arch_3 KaiC dom 91.3 0.17 3.7E-06 36.7 2.5 37 6-43 132-177 (224)
406 cd03243 ABC_MutS_homologs The 91.3 0.22 4.8E-06 35.8 3.0 37 10-48 133-170 (202)
407 KOG2355|consensus 91.1 0.32 6.9E-06 37.3 3.7 43 6-48 185-228 (291)
408 KOG0058|consensus 91.1 0.44 9.6E-06 41.3 5.0 50 6-61 642-692 (716)
409 KOG0055|consensus 90.4 0.5 1.1E-05 43.3 4.9 48 7-60 1165-1213(1228)
410 PRK13830 conjugal transfer pro 90.1 0.68 1.5E-05 40.5 5.4 41 5-46 672-722 (818)
411 TIGR00416 sms DNA repair prote 90.1 0.38 8.2E-06 39.4 3.6 39 6-44 199-245 (454)
412 TIGR02168 SMC_prok_B chromosom 89.2 0.41 9E-06 41.8 3.4 36 5-43 1130-1165(1179)
413 TIGR03881 KaiC_arch_4 KaiC dom 88.9 0.43 9.3E-06 34.6 2.9 37 7-43 144-188 (229)
414 cd03282 ABC_MSH4_euk MutS4 hom 88.5 0.68 1.5E-05 33.8 3.7 29 8-37 131-159 (204)
415 smart00534 MUTSac ATPase domai 88.0 0.74 1.6E-05 32.7 3.5 29 9-38 102-130 (185)
416 cd03284 ABC_MutS1 MutS1 homolo 87.1 0.92 2E-05 33.3 3.7 35 8-43 132-166 (216)
417 PRK06067 flagellar accessory p 86.4 1.3 2.9E-05 32.3 4.2 38 6-44 143-187 (234)
418 cd03286 ABC_MSH6_euk MutS6 hom 86.2 1.3 2.7E-05 32.9 4.1 26 11-36 135-160 (218)
419 COG5265 ATM1 ABC-type transpor 85.8 1.6 3.5E-05 36.3 4.7 50 5-60 436-486 (497)
420 COG2401 ABC-type ATPase fused 85.2 2.2 4.8E-05 35.7 5.3 42 6-47 545-588 (593)
421 TIGR02169 SMC_prok_A chromosom 85.2 1.5 3.3E-05 38.6 4.7 41 5-48 1115-1156(1164)
422 cd03287 ABC_MSH3_euk MutS3 hom 83.1 1.9 4E-05 32.1 3.8 28 8-35 133-160 (222)
423 PRK09302 circadian clock prote 83.0 1.3 2.7E-05 36.4 3.1 38 6-44 155-201 (509)
424 cd01120 RecA-like_NTPases RecA 82.8 1.8 4E-05 28.5 3.3 26 8-33 116-141 (165)
425 KOG0062|consensus 80.8 0.72 1.6E-05 39.0 0.9 37 9-45 235-271 (582)
426 PRK04296 thymidine kinase; Pro 80.5 7.2 0.00016 27.8 5.9 42 2-44 90-141 (190)
427 cd01125 repA Hexameric Replica 79.5 2.6 5.5E-05 31.0 3.4 26 6-31 136-161 (239)
428 PRK00409 recombination and DNA 79.4 2.3 5.1E-05 37.2 3.6 36 9-45 431-466 (782)
429 TIGR00606 rad50 rad50. This fa 78.6 2.6 5.7E-05 38.7 3.8 31 7-37 1244-1278(1311)
430 cd03281 ABC_MSH5_euk MutS5 hom 77.5 3.9 8.4E-05 29.9 3.8 29 8-36 131-161 (213)
431 COG0419 SbcC ATPase involved i 76.9 5.7 0.00012 35.1 5.3 38 4-43 859-896 (908)
432 cd01122 GP4d_helicase GP4d_hel 76.4 6.6 0.00014 29.0 4.9 40 4-43 166-227 (271)
433 TIGR00152 dephospho-CoA kinase 76.3 5.1 0.00011 28.2 4.1 37 6-43 93-131 (188)
434 PF09818 ABC_ATPase: Predicted 74.9 6.3 0.00014 32.7 4.7 40 5-44 374-413 (448)
435 COG4615 PvdE ABC-type sideroph 74.8 1.5 3.2E-05 36.5 1.1 32 16-48 496-528 (546)
436 cd01394 radB RadB. The archaea 74.6 5.2 0.00011 28.7 3.8 39 5-43 134-185 (218)
437 cd01123 Rad51_DMC1_radA Rad51_ 73.5 4.8 0.0001 29.0 3.5 26 4-29 145-170 (235)
438 KOG0927|consensus 73.2 8.5 0.00018 33.0 5.2 43 7-49 256-300 (614)
439 KOG0927|consensus 72.6 2.4 5.2E-05 36.2 1.8 34 10-43 547-580 (614)
440 COG3044 Predicted ATPase of th 72.3 5.5 0.00012 33.3 3.7 44 3-47 368-412 (554)
441 TIGR02788 VirB11 P-type DNA tr 72.1 3.9 8.6E-05 31.5 2.8 62 5-73 230-292 (308)
442 PRK09361 radB DNA repair and r 71.9 8.6 0.00019 27.7 4.4 38 6-43 139-189 (225)
443 COG3910 Predicted ATPase [Gene 71.1 10 0.00022 28.7 4.7 38 5-43 165-202 (233)
444 PRK08533 flagellar accessory p 70.5 4.2 9.1E-05 30.1 2.6 37 5-43 140-184 (230)
445 PRK11823 DNA repair protein Ra 70.4 11 0.00024 30.8 5.2 39 6-44 185-231 (446)
446 cd01121 Sms Sms (bacterial rad 69.6 8.5 0.00018 30.8 4.3 39 6-44 187-233 (372)
447 TIGR02237 recomb_radB DNA repa 68.9 9 0.00019 27.2 3.9 39 5-43 126-177 (209)
448 KOG0056|consensus 68.3 7.9 0.00017 33.3 4.0 49 6-60 712-761 (790)
449 COG4136 ABC-type uncharacteriz 68.2 6.7 0.00014 28.8 3.1 26 16-42 182-207 (213)
450 cd00984 DnaB_C DnaB helicase C 67.7 7.3 0.00016 28.2 3.3 39 5-43 149-206 (242)
451 PF15232 DUF4585: Domain of un 65.0 3.2 6.9E-05 26.3 0.8 11 97-107 15-25 (75)
452 cd01393 recA_like RecA is a b 63.1 11 0.00024 27.0 3.5 26 5-30 145-170 (226)
453 KOG0065|consensus 62.6 4.4 9.5E-05 37.8 1.5 44 6-50 968-1014(1391)
454 KOG0065|consensus 61.3 17 0.00037 34.1 5.0 63 4-73 296-360 (1391)
455 KOG0066|consensus 58.9 4.1 8.8E-05 34.6 0.7 26 19-44 459-484 (807)
456 PF01380 SIS: SIS domain SIS d 57.9 37 0.00081 21.7 5.1 38 5-43 67-105 (131)
457 PF02739 5_3_exonuc_N: 5'-3' e 57.6 26 0.00057 24.8 4.6 54 6-60 112-167 (169)
458 TIGR00706 SppA_dom signal pept 57.5 60 0.0013 23.4 6.6 66 4-75 48-119 (207)
459 PF08423 Rad51: Rad51; InterP 57.2 16 0.00035 27.5 3.6 25 4-28 163-187 (256)
460 cd07022 S49_Sppa_36K_type Sign 54.6 80 0.0017 22.9 6.9 66 4-75 60-131 (214)
461 cd07023 S49_Sppa_N_C Signal pe 53.7 80 0.0017 22.6 7.1 66 5-75 53-124 (208)
462 PF02463 SMC_N: RecF/RecN/SMC 53.2 46 0.00099 23.7 5.3 35 6-43 178-212 (220)
463 KOG0066|consensus 52.8 19 0.00041 30.8 3.6 40 6-45 738-777 (807)
464 PLN03186 DNA repair protein RA 50.5 23 0.0005 28.1 3.6 26 4-29 248-273 (342)
465 PRK06193 hypothetical protein; 49.3 23 0.00049 26.2 3.2 30 6-36 143-172 (206)
466 TIGR02239 recomb_RAD51 DNA rep 48.2 25 0.00055 27.4 3.5 26 4-29 221-246 (316)
467 cd07019 S49_SppA_1 Signal pept 47.1 1.1E+02 0.0023 22.2 6.5 64 5-73 57-126 (211)
468 TIGR00665 DnaB replicative DNA 46.4 27 0.00058 28.0 3.5 40 4-43 330-388 (434)
469 cd07040 HP Histidine phosphata 46.1 50 0.0011 21.5 4.3 30 7-36 84-116 (153)
470 PRK13891 conjugal transfer pro 44.6 38 0.00082 30.1 4.3 28 6-34 708-735 (852)
471 PF06745 KaiC: KaiC; InterPro 44.5 53 0.0012 23.5 4.6 35 9-43 141-184 (226)
472 PRK00064 recF recombination pr 43.9 43 0.00093 26.4 4.3 27 19-45 329-358 (361)
473 cd00544 CobU Adenosylcobinamid 43.7 76 0.0017 22.4 5.2 23 6-29 104-126 (169)
474 PF00185 OTCace: Aspartate/orn 42.5 88 0.0019 21.7 5.3 38 5-43 44-81 (158)
475 PLN03210 Resistant to P. syrin 42.3 47 0.001 30.3 4.7 37 7-43 310-349 (1153)
476 TIGR03162 ribazole_cobC alpha- 42.3 39 0.00085 23.1 3.4 30 7-36 124-154 (177)
477 cd07018 S49_SppA_67K_type Sign 42.1 93 0.002 22.7 5.6 66 4-74 64-134 (222)
478 cd03242 ABC_RecF RecF is a rec 42.1 28 0.00062 26.0 2.9 25 21-45 240-268 (270)
479 TIGR02238 recomb_DMC1 meiotic 41.6 37 0.00081 26.4 3.5 26 4-29 221-246 (313)
480 PTZ00035 Rad51 protein; Provis 41.5 37 0.00081 26.7 3.6 26 4-29 243-268 (337)
481 PRK02102 ornithine carbamoyltr 41.4 64 0.0014 25.6 4.8 37 5-42 195-231 (331)
482 PRK04301 radA DNA repair and r 41.3 37 0.00079 26.1 3.4 23 5-27 229-251 (317)
483 PRK01713 ornithine carbamoyltr 40.9 67 0.0015 25.4 4.9 39 3-42 194-232 (334)
484 PF13611 Peptidase_S76: Serine 40.5 41 0.0009 23.1 3.2 31 3-33 34-64 (121)
485 PF03796 DnaB_C: DnaB-like hel 40.0 39 0.00085 24.9 3.3 39 5-43 156-213 (259)
486 PRK13764 ATPase; Provisional 39.2 55 0.0012 28.2 4.4 39 7-46 338-392 (602)
487 cd05014 SIS_Kpsf KpsF-like pro 37.9 75 0.0016 20.4 4.1 37 6-43 62-99 (128)
488 TIGR00249 sixA phosphohistidin 37.4 53 0.0011 22.6 3.5 27 5-31 86-112 (152)
489 cd07067 HP_PGM_like Histidine 37.4 80 0.0017 20.8 4.3 29 7-35 86-115 (153)
490 PF00488 MutS_V: MutS domain V 37.1 42 0.00091 24.9 3.1 27 9-35 146-172 (235)
491 COG4778 PhnL ABC-type phosphon 36.5 75 0.0016 23.9 4.2 38 6-44 190-227 (235)
492 TIGR03600 phage_DnaB phage rep 36.5 42 0.00092 26.8 3.2 24 4-27 329-352 (421)
493 TIGR00412 redox_disulf_2 small 36.1 98 0.0021 18.5 5.7 56 5-60 14-73 (76)
494 PRK03515 ornithine carbamoyltr 35.7 95 0.0021 24.6 5.0 40 3-43 194-233 (336)
495 PRK07200 aspartate/ornithine c 35.7 86 0.0019 25.5 4.9 39 4-43 232-270 (395)
496 PRK10949 protease 4; Provision 35.2 2.9E+02 0.0062 23.9 8.1 66 4-74 131-201 (618)
497 cd04728 ThiG Thiazole synthase 35.0 2.1E+02 0.0045 22.0 6.6 55 5-60 110-169 (248)
498 TIGR01618 phage_P_loop phage n 34.9 46 0.001 24.8 3.0 24 6-30 121-144 (220)
499 TIGR01069 mutS2 MutS2 family p 34.7 53 0.0012 28.9 3.7 25 9-34 426-450 (771)
500 PF13638 PIN_4: PIN domain; PD 34.7 1E+02 0.0022 20.1 4.4 28 6-33 92-120 (133)
No 1
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=2.3e-21 Score=156.88 Aligned_cols=100 Identities=49% Similarity=0.830 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI 84 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i 84 (107)
+.+.+.|||+.++.++|.++|.||+-++..++||++|+.|+|+..|....|..+.+++|.|++.++++|+||+.++|||+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l~vTFRRD~~t~RPRv 571 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTFRRDPETGRPRV 571 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHHcCcEEecCcccCCCCc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCChhhHHHHHhCceeec
Q psy1687 85 NKNNSVKDCEQKRAGQYFFY 104 (107)
Q Consensus 85 ~~~~~~~~~~~k~~~~~~~~ 104 (107)
|+.+|++|++||.+|.|||.
T Consensus 572 NK~gS~lDreQKe~g~Yyy~ 591 (591)
T COG1245 572 NKPGSQLDREQKERGEYYYA 591 (591)
T ss_pred CCCcchhhHHHHhccCcccC
Confidence 99999999999999999995
No 2
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=1.1e-20 Score=156.66 Aligned_cols=101 Identities=44% Similarity=0.738 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI 84 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i 84 (107)
.+++++|++++++.|+|+|+||||++++..+|||+++|+|+++..|.+.+|..+.+.+|.|++..+++|++|+.+++|++
T Consensus 490 ~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~~~~~~~~~~~~~~~l~~~~i~~~~d~~~~~~~i 569 (590)
T PRK13409 490 LAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGHASGPMDMREGMNRFLKELGITFRRDEETGRPRV 569 (590)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeeecCCchhHHHHHHHHHHHcCCEEEECCCCCCcCc
Confidence 57889999998777899999999999999999999999999988888888888999999999999999999999999999
Q ss_pred eeCCChhhHHHHHhCceeecc
Q psy1687 85 NKNNSVKDCEQKRAGQYFFYE 105 (107)
Q Consensus 85 ~~~~~~~~~~~k~~~~~~~~~ 105 (107)
++.+|++|+|||++|.|||++
T Consensus 570 ~~~~s~~d~~q~~~~~~~~~~ 590 (590)
T PRK13409 570 NKPGSYLDREQKERGEYYYAD 590 (590)
T ss_pred CCCcchhhHHHHhcCCeeccC
Confidence 999999999999999999964
No 3
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=4e-20 Score=138.54 Aligned_cols=95 Identities=60% Similarity=0.923 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI 84 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i 84 (107)
..+.++|++++++.++|+|+||||++++..+||++++|+|+++..|.+++|+.+.+.+|.|++..+++|++++.+++|++
T Consensus 152 ~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 231 (246)
T cd03237 152 LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRPRI 231 (246)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCEEecCcccCCCCC
Confidence 46788899988767899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCChhhHHHHHhC
Q psy1687 85 NKNNSVKDCEQKRAG 99 (107)
Q Consensus 85 ~~~~~~~~~~~k~~~ 99 (107)
|+.+|++|++||++|
T Consensus 232 ~~~~~~~~~~~~~~~ 246 (246)
T cd03237 232 NKLGSVKDREQKESG 246 (246)
T ss_pred CCcchHHHHHHHhcC
Confidence 999999999999986
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.54 E-value=3.4e-14 Score=108.11 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee---ecCCchhHHHHHHhhhhhcCeeeeeCCCC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST---LANAPQNLLNGMNKFLSLLGITFRRDPNN 79 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g---~v~tp~~L~~~~~~~l~~~~i~~~~~~~~ 79 (107)
-+++|++++++++++|+|+|+|+||+|.|.+|||++++|+ |++.++| ++.|++.+.++| +.++.+..++.+
T Consensus 174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vy-----gv~~~~~~~~~~ 248 (258)
T COG1120 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVY-----GVDADVIEDPDS 248 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHh-----CCceEEEEcCCC
Confidence 3689999999998899999999999999999999999999 9999998 788888888888 777777777877
Q ss_pred CcceeeeCC
Q psy1687 80 FRPRINKNN 88 (107)
Q Consensus 80 ~~~~i~~~~ 88 (107)
+.|.+.+..
T Consensus 249 ~~p~~i~~~ 257 (258)
T COG1120 249 GKPVVIPLG 257 (258)
T ss_pred CceEEecCC
Confidence 777776643
No 5
>KOG0063|consensus
Probab=99.39 E-value=4.8e-13 Score=108.44 Aligned_cols=98 Identities=77% Similarity=1.192 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCcceeee
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINK 86 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i~~ 86 (107)
..+.++|+.-..++|-.+|.||+-.|..++||+++..|.+........|..|....|.|++..+++|++++.+.+|+++.
T Consensus 495 AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~gmN~fl~~l~itfRrd~n~~rprink 574 (592)
T KOG0063|consen 495 ASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRFLKNLDITFRRDPNNFRPRINK 574 (592)
T ss_pred HHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHHhHHHHhhcceeeccCCcccccccch
Confidence 45677787666689999999999999999999999999887655667899999999999999999999999999999999
Q ss_pred CCChhhHHHHHhCceeec
Q psy1687 87 NNSVKDCEQKRAGQYFFY 104 (107)
Q Consensus 87 ~~~~~~~~~k~~~~~~~~ 104 (107)
.+|++|++||++|.|||.
T Consensus 575 ~~s~~d~~qK~~g~~ffl 592 (592)
T KOG0063|consen 575 LDSQKDVEQKKSGQYFFL 592 (592)
T ss_pred hhHHHHHHHhhcCCcccC
Confidence 999999999999999984
No 6
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.3e-11 Score=92.67 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee---ecCCchhHHHHHHhhhhhcCeeeeeCCCCC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST---LANAPQNLLNGMNKFLSLLGITFRRDPNNF 80 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g---~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~ 80 (107)
+.++++.++++++ |..|+.|.||+|.|+.|||||++|. |++.+.| ++.|+|.+..+| +.++.+.++|...
T Consensus 178 ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vy-----g~~~~V~~~P~~~ 251 (259)
T COG4559 178 HHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVY-----GADIRVGRHPARN 251 (259)
T ss_pred HHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHh-----CCceeeeeccCCC
Confidence 5689999999987 7899999999999999999999999 9999998 888888888888 8899999999888
Q ss_pred cceeee
Q psy1687 81 RPRINK 86 (107)
Q Consensus 81 ~~~i~~ 86 (107)
.|.+.+
T Consensus 252 ~P~V~~ 257 (259)
T COG4559 252 IPLVLP 257 (259)
T ss_pred CCeeee
Confidence 887765
No 7
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=2.4e-11 Score=90.55 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee---ecCCchhHHHHHHhhhhhcCeee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST---LANAPQNLLNGMNKFLSLLGITF 73 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g---~v~tp~~L~~~~~~~l~~~~i~~ 73 (107)
-++|++|++++++.|+|+++|.||+|+|..|+|.|+.|+ |+++.+| ++.+|+.|.+.| .+++.+
T Consensus 172 v~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiy-----dm~i~v 239 (252)
T COG4604 172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY-----DMDIPV 239 (252)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHh-----cCCcee
Confidence 478999999999999999999999999999999999999 9999986 555555555555 445554
No 8
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.15 E-value=7.3e-11 Score=90.58 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH-HHhhhhhc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG-MNKFLSLL 69 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~-~~~~l~~~ 69 (107)
..+-+.++++.++.|+|+|+||||+++|..++|||.+|+ |++... ++|+++... .|+|.+.+
T Consensus 172 ~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~---~~P~~il~~Pan~FV~~f 235 (309)
T COG1125 172 KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY---DTPDEILANPANDFVEDF 235 (309)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe---CCHHHHHhCccHHHHHHH
Confidence 356788999999999999999999999999999999999 665544 799999886 67777765
No 9
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.02 E-value=5.1e-10 Score=88.10 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
++-+.|.+|.++.++||||||||+++|.+++|||.+|+ |+++.. |||+++...
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~---Gtp~eIl~~ 255 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQV---GTPEEILLN 255 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEe---CCHHHHHcC
Confidence 57788888988889999999999999999999999999 665544 799998875
No 10
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.98 E-value=8.7e-10 Score=86.07 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+|+++|+++.++.|+|+|+||||+..++.+||||.||. |+++-. |+.++++..
T Consensus 190 aqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~---g~~~~i~~~ 244 (316)
T COG0444 190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE---GPVEEIFKN 244 (316)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe---CCHHHHhcC
Confidence 478999999999899999999999999999999999999 877766 677777774
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=1.5e-09 Score=81.47 Aligned_cols=52 Identities=25% Similarity=0.387 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
-|+++.+++|+++ |+|+++|||+|.+|...||||++|+ |+++.+ ++|++++.
T Consensus 173 ~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~---g~p~~~f~ 225 (240)
T COG1126 173 GEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEE---GPPEEFFD 225 (240)
T ss_pred HHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEe---cCHHHHhc
Confidence 5899999999876 9999999999999999999999999 656665 58888876
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1.4e-09 Score=82.56 Aligned_cols=44 Identities=32% Similarity=0.435 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~ 48 (107)
..+.+.|.+++++.++|+++||||+++|..+||||++|+++|+.
T Consensus 167 ~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 46778899999999999999999999999999999999987844
No 13
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.92 E-value=2.3e-09 Score=81.22 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++.++|+++.++.|.||++|.|||+.+..+||||+||+ |+++++ |+|+++.+
T Consensus 185 ~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe---G~P~eV~~ 239 (250)
T COG0411 185 TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE---GTPEEVRN 239 (250)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc---CCHHHHhc
Confidence 3688999999988778999999999999999999999999 999999 58888765
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.91 E-value=1.9e-09 Score=81.92 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMN 63 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~ 63 (107)
-++-++|++|+++.|.|+++||||++.+..+|||++++. |++.+. |+|+++.+.-+
T Consensus 182 ~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~---Gt~~el~~sd~ 238 (263)
T COG1127 182 GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE---GTPEELLASDD 238 (263)
T ss_pred HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe---CCHHHHHhCCC
Confidence 467889999999999999999999999999999999999 888998 69999988533
No 15
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=3.3e-09 Score=79.72 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.++++++++|.++.|+|+|++|||++++..+|||+++|+ |+.+.+ |+|+++++.
T Consensus 175 ~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~---g~p~~i~~~ 229 (235)
T COG1122 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD---GDPAEIFND 229 (235)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeec---CCHHHHhhh
Confidence 578999999988878999999999999999999999999 888888 478877663
No 16
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.88 E-value=4e-09 Score=80.31 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++ |+||++||||++.+..+||++++|+++..+.| +|+++.+
T Consensus 176 ~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G---~~~~~~~ 227 (254)
T COG1121 176 KEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLIASG---PPEEVLT 227 (254)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCeeEecc---ChhhccC
Confidence 5789999999888 99999999999999999999999998888886 4444443
No 17
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.87 E-value=1.1e-08 Score=73.67 Aligned_cols=69 Identities=42% Similarity=0.662 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITF 73 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~ 73 (107)
..+.++|++++++.+.|+|+||||++++..+||++++|+++++..+-++.|....+..|.|+.++-..|
T Consensus 108 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (177)
T cd03222 108 LNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYLITF 176 (177)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHHHHHHHHhhcccc
Confidence 356778888865535899999999999999999999999878887788999999999999998886655
No 18
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.83 E-value=5.8e-09 Score=86.32 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+|+++|+++.++.|+++|+||||+..++++|||++||. |+++-. |+++++++.
T Consensus 191 ~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~---G~~~~i~~~ 245 (539)
T COG1123 191 AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET---GPTEEILSN 245 (539)
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe---cCHHHHHhc
Confidence 479999999999999999999999999999999999999 776665 688888875
No 19
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.79 E-value=1.1e-08 Score=81.07 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.++...|+++.++.|+|.|+||||-++|..+||||++|+ |++. ++|+|+++.+.
T Consensus 173 ~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~---Q~gtP~eiY~~ 227 (352)
T COG3842 173 EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE---QVGTPEEIYER 227 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee---ecCCHHHHhhC
Confidence 356778899988899999999999999999999999999 6544 34899999885
No 20
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.7e-08 Score=78.49 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++.++.|+|+|+||||++++..+|||+++|+ |+++.. |+++++.+
T Consensus 195 ~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~---g~~~~i~~ 248 (330)
T PRK15093 195 AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET---APSKELVT 248 (330)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 578899999987779999999999999999999999999 877766 46666654
No 21
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=1.9e-08 Score=78.30 Aligned_cols=53 Identities=9% Similarity=0.258 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|.|+|+||||++++..+|||+++|+ |+++.. ++++++.+
T Consensus 190 ~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~---g~~~~~~~ 243 (326)
T PRK11022 190 AQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET---GKAHDIFR 243 (326)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhh
Confidence 468899999987779999999999999999999999999 877765 57777765
No 22
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.74 E-value=4.5e-08 Score=78.53 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|+++++ .|+|||++|||++++..+|||+++|+ |++... |+|+++.
T Consensus 176 ~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~---G~~~ev~ 227 (402)
T PRK09536 176 VRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAA---GPPADVL 227 (402)
T ss_pred HHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---cCHHHHh
Confidence 578999999986 48999999999999999999999999 877776 4666643
No 23
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.72 E-value=2.7e-08 Score=77.60 Aligned_cols=53 Identities=11% Similarity=0.230 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|.|+|+||||++.+..+|||+++|+ |+++.. |+++++.+
T Consensus 198 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~---g~~~~i~~ 251 (330)
T PRK09473 198 AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY---GNARDVFY 251 (330)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 468899999987779999999999999999999999999 877766 57777765
No 24
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.7e-08 Score=75.52 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
..+|+.|++++++.|+|+|+..|+++.|..||||++-|+ |+++.. |++.++.+.
T Consensus 184 ~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD---g~~~el~~~ 238 (258)
T COG3638 184 KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD---GPASELTDE 238 (258)
T ss_pred HHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe---CChhhhhHH
Confidence 679999999999999999999999999999999999999 999998 477776653
No 25
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.71 E-value=2.8e-08 Score=77.87 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
-++-++|+++.++.|.|.|+||||.++|..+||||++|+ |++... ++|+++.+.
T Consensus 174 ~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv---g~p~ev~~~ 228 (345)
T COG1118 174 KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV---GPPDEVYDH 228 (345)
T ss_pred HHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee---CCHHHHhcC
Confidence 367789999988889999999999999999999999999 765544 799998774
No 26
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.70 E-value=3e-08 Score=78.57 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.++.+++++++++.|+|+|+||||+++|..+||||++|+ |++... ++|+++...
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~---g~~~ei~~~ 220 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV---GTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee---CCHHHHHhC
Confidence 467888888877779999999999999999999999999 766655 688887653
No 27
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=3.2e-08 Score=77.14 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|.|+|+||||++++..+||++++|+ |+++.. |+++++.+
T Consensus 191 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~---g~~~~~~~ 244 (327)
T PRK11308 191 AQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK---GTKEQIFN 244 (327)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhc
Confidence 478899999988779999999999999999999999999 877765 56676655
No 28
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.70 E-value=3.5e-08 Score=77.07 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++.++.|.|+|+||||++++..+|||+++|+ |+++.. ++++++.+
T Consensus 198 ~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~---g~~~~i~~ 251 (331)
T PRK15079 198 AQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL---GTYDEVYH 251 (331)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHc
Confidence 478899999987779999999999999999999999999 877666 56666654
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.68 E-value=4.2e-08 Score=77.29 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.+.|+++.++.|.|+|+||||+++|..+|||+++|+ |++... |+|+++.+
T Consensus 171 ~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~---g~~~~~~~ 224 (353)
T TIGR03265 171 EHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV---GTPQEIYR 224 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 467888999987779999999999999999999999999 877665 68888875
No 30
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=2.6e-08 Score=78.07 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..|+++|++++++.|.||++|||.|+.+..+|||+.||+ |+++-.| +..+++.
T Consensus 178 ~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G---~v~~vF~ 231 (339)
T COG1135 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG---TVSEVFA 231 (339)
T ss_pred HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEec---cHHHhhc
Confidence 478999999999999999999999999999999999999 8888775 4444443
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.68 E-value=4.4e-08 Score=77.14 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 173 ~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~---g~~~~i~~ 226 (353)
T PRK10851 173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA---GTPDQVWR 226 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 467889999987779999999999999999999999999 776655 68888765
No 32
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.68 E-value=3.9e-08 Score=77.32 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|+|||+||||++.+..+||++++|+ |++... |++++++.
T Consensus 177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~---g~~~~v~~ 230 (343)
T TIGR02314 177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ---GTVSEIFS 230 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHc
Confidence 478899999988779999999999999999999999999 877766 46666653
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.68 E-value=4.5e-08 Score=77.46 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhc-CcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHA-KKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~-~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.++.+.|+++.++. |+|+|+||||+++|..+|||+++|+ |++... ++|+++.+.
T Consensus 174 ~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~---g~~~~~~~~ 229 (362)
T TIGR03258 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH---GEPQALYDA 229 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHhC
Confidence 46788888988765 8999999999999999999999999 777665 688888763
No 34
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.67 E-value=9.9e-08 Score=72.00 Aligned_cols=63 Identities=27% Similarity=0.453 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~ 68 (107)
..+.++|+++.++ ++|+|++|||++++..+||++++|+|++++.|-++.|.......|.+...
T Consensus 176 ~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (255)
T cd03236 176 LNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLDG 238 (255)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEECCCCCcceeeecCccHHHHHHHHHhc
Confidence 3577888888754 89999999999999999999999999999999999999988665555533
No 35
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=4.9e-08 Score=76.97 Aligned_cols=53 Identities=28% Similarity=0.359 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.+.|+++.++.|+|+|+||||+++|..+||++++|+ |++... |+|+++.+
T Consensus 171 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~---g~~~~~~~ 224 (356)
T PRK11650 171 VQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI---GTPVEVYE 224 (356)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE---CCHHHHHh
Confidence 467888999887779999999999999999999999999 766655 68888865
No 36
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=5.5e-08 Score=74.16 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|.|||+||||++++..+|||+++|+ |++... ++++++.+
T Consensus 181 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~---g~~~~~~~ 234 (287)
T PRK13637 181 DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ---GTPREVFK 234 (287)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 578889999977668999999999999999999999998 877766 57777654
No 37
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.66 E-value=3.4e-08 Score=74.95 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
-+|+++|.++.++.|.|+|+||||+..+..+|||++||+ |+.+-. ++.+++.+
T Consensus 178 a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~---~~~~~l~~ 231 (252)
T COG1124 178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI---GPTEELLS 231 (252)
T ss_pred HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe---echhhhhc
Confidence 368999999999999999999999999999999999999 776665 34444443
No 38
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=5.5e-08 Score=76.60 Aligned_cols=53 Identities=28% Similarity=0.292 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.+.|+++.++.|+|+|+||||++++..+|||+++|+ |++... ++|+++.+
T Consensus 173 ~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~---g~~~~~~~ 226 (351)
T PRK11432 173 RSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI---GSPQELYR 226 (351)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 467788888887779999999999999999999999999 776655 68888765
No 39
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.64 E-value=5.1e-08 Score=80.82 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
-.++++|+++.++.|.|+++||||+.++..+||||++|. |+++-. |+.+.+++.
T Consensus 466 a~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~---G~~~~v~~~ 520 (539)
T COG1123 466 AQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE---GPTEKVFEN 520 (539)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe---CCHHHHhcC
Confidence 468999999999999999999999999999999999999 887776 577777663
No 40
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=7.1e-08 Score=73.64 Aligned_cols=53 Identities=15% Similarity=0.319 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|.|||++|||++++..+|||+++|+ |++... ++++++.+
T Consensus 182 ~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~---g~~~~~~~ 235 (290)
T PRK13634 182 KEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ---GTPREIFA 235 (290)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhc
Confidence 467888999977679999999999999999999999999 877766 46666654
No 41
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.63 E-value=7.6e-08 Score=76.85 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|++++++.++|+|+||||++++..+|||+++|+ |+++.. ++++++..
T Consensus 201 ~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~---g~~~ei~~ 254 (382)
T TIGR03415 201 TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH---GTPEEIVL 254 (382)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cCHHHHhh
Confidence 468888999977679999999999999999999999999 776665 67877754
No 42
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.60 E-value=8.8e-08 Score=76.15 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.+.|+++.++.|+|+|+||||+++|..+||++++|+ |++... ++|+++.+
T Consensus 181 ~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~---g~~~~i~~ 234 (375)
T PRK09452 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD---GTPREIYE 234 (375)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 467888999987779999999999999999999999999 766655 68888765
No 43
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.60 E-value=9.3e-08 Score=73.73 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++++ .|+|||++||+++++..+|||+++|+ |++... ++++++.+
T Consensus 175 ~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~---g~~~~l~~ 227 (306)
T PRK13537 175 HLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE---GAPHALIE 227 (306)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 467888999865 49999999999999999999999999 888776 57777754
No 44
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=7.9e-08 Score=70.69 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|++++++.|+|||+||||++++..+||++++|+ |++... ++++++.
T Consensus 173 ~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~ 225 (235)
T cd03261 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE---GTPEELR 225 (235)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe---cCHHHHc
Confidence 467888988876568999999999999999999999998 776655 4555543
No 45
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=9.3e-08 Score=72.93 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++ |.|||++|||++++..+|||+++|+ |++... ++|+++++
T Consensus 181 ~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~G~i~~~---g~~~~~~~ 233 (288)
T PRK13643 181 IEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISC---GTPSDVFQ 233 (288)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHc
Confidence 4677888888754 8999999999999999999999999 777766 57887765
No 46
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.1e-07 Score=72.29 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|+|||+||||++++..+|||+++|+ |++... ++++++..
T Consensus 182 ~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~---g~~~~~~~ 235 (286)
T PRK13646 182 RQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ---TSPKELFK 235 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 467888999876668999999999999999999999999 877766 57777655
No 47
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=1.2e-07 Score=75.40 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.+.|+++.++.|.|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 186 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~---g~~~~~~~ 239 (377)
T PRK11607 186 DRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI---GEPEEIYE 239 (377)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE---cCHHHHHh
Confidence 356677888877779999999999999999999999999 766655 68888765
No 48
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.58 E-value=1.3e-07 Score=73.46 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|+|+|+||||++++..+||++++|+ |++... ++|+++.+
T Consensus 137 ~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~---g~~~~~~~ 190 (325)
T TIGR01187 137 DQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQI---GTPEEIYE 190 (325)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 467888888887779999999999999999999999999 776655 57777765
No 49
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=1.3e-07 Score=73.04 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++++ .|+|||+||||++++..+|||+++|+ |++... ++++++.+
T Consensus 202 ~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~---g~~~~~~~ 254 (305)
T PRK13651 202 KEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKD---GDTYDILS 254 (305)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhc
Confidence 467888888875 49999999999999999999999999 877666 57777655
No 50
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.55 E-value=1.6e-07 Score=73.74 Aligned_cols=52 Identities=27% Similarity=0.407 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++++ .|+|||++|||++++..+||++++|+ |++... ++++++.+
T Consensus 209 ~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~---g~~~~l~~ 261 (340)
T PRK13536 209 HLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE---GRPHALID 261 (340)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 578889999876 49999999999999999999999998 888877 57777754
No 51
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.55 E-value=1.8e-07 Score=71.93 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM 62 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~ 62 (107)
-.++.++|++++++.|.||+++||.++++..+||||++|+ |+.++. ++++++.+.+
T Consensus 172 ~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~---g~~~~l~~~~ 228 (293)
T COG1131 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE---GTPEELKEKF 228 (293)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe---CCHHHHHHhh
Confidence 3678999999988755899999999999999999999999 888887 5888876643
No 52
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=1.8e-07 Score=70.79 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|.|+|++|||++++..+|||+++|+ |+.... ++++++.+
T Consensus 174 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~---g~~~~~~~ 227 (277)
T PRK13652 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY---GTVEEIFL 227 (277)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE---CCHHHHhc
Confidence 467888988877668999999999999999999999998 877766 57777765
No 53
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.8e-07 Score=74.00 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++.++.|.|+|+||||++++..+||++++|+ |++... ++|+++.+
T Consensus 170 ~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~---g~~~~i~~ 223 (369)
T PRK11000 170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV---GKPLELYH 223 (369)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 467788888877679999999999999999999999999 766655 67887765
No 54
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=2.1e-07 Score=68.36 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++.|+|||++|||++++..+||++++|+ |++... ++++++.
T Consensus 181 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~ 233 (241)
T cd03256 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD---GPPAELT 233 (241)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee---cCHHHhh
Confidence 467888888876668999999999999999999999998 776655 5666653
No 55
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.5e-07 Score=78.62 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|.|||+||||++++..+|||+++|+ |+++.. ++++++.+
T Consensus 500 ~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~---g~~~~i~~ 553 (623)
T PRK10261 500 GQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI---GPRRAVFE 553 (623)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cCHHHHhc
Confidence 468899999987779999999999999999999999998 877665 57777654
No 56
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=1.8e-07 Score=71.16 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|.|||++|||++++..+|||+++|+ |++... |+++++.+
T Consensus 178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~---g~~~~~~~ 231 (283)
T PRK13636 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ---GNPKEVFA 231 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 357888999977668999999999999999999999998 877766 57777655
No 57
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.53 E-value=1.3e-07 Score=76.79 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+|+++|++|.++.|++++++|||+..+..+||||.||. |+++-+ ++.+.+++.
T Consensus 194 aQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~---~~t~~lF~~ 248 (534)
T COG4172 194 AQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET---GTTETLFAA 248 (534)
T ss_pred HHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec---CcHHHHhhC
Confidence 478999999999999999999999999999999999999 887766 567777764
No 58
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=2.1e-07 Score=73.05 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
..++++|++++++.|+|+|+||||++++..+||++++|+ |++... ++|+++.+.
T Consensus 165 ~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~i~~~ 219 (352)
T PRK11144 165 RELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF---GPLEEVWAS 219 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe---cCHHHHHhC
Confidence 467888999887668999999999999999999999999 776665 577777653
No 59
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=2.4e-07 Score=70.17 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
.+++++|++++++ |.|||++|||++++..+|||+++|+ |++... ++++.+
T Consensus 175 ~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~ 225 (274)
T PRK13647 175 ETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAE---GDKSLL 225 (274)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHh
Confidence 5688999999765 8999999999999999999999999 776665 455543
No 60
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=69.72 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
...+.+.++++.. .|++||++||+|+++..+|||+++++ |+++.. |+++.+.+.
T Consensus 169 ~r~~~dfi~q~k~-egr~viFSSH~m~EvealCDrvivlh~Gevv~~---gs~~~l~~r 223 (245)
T COG4555 169 RRKFHDFIKQLKN-EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE---GSIEALDAR 223 (245)
T ss_pred HHHHHHHHHHhhc-CCcEEEEecccHHHHHHhhheEEEEecCcEEEc---CCHHHHHHH
Confidence 3456778888855 49999999999999999999999999 988887 588877764
No 61
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.51 E-value=2.2e-07 Score=77.67 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|++++++.|+|||+||||++++..+||||++|+ |+++.. ++++++.
T Consensus 205 ~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~---g~~~~~~ 257 (623)
T PRK10261 205 AQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET---GSVEQIF 257 (623)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeeccc---CCHHHhh
Confidence 468899999987679999999999999999999999998 877765 4666654
No 62
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.50 E-value=1.9e-07 Score=71.64 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++.++.|.|.+++|||+..+..+|||++||. |+++-. ++.+++++
T Consensus 146 aqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~---g~~~~~~~ 199 (268)
T COG4608 146 AQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI---GPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe---cCHHHHhh
Confidence 468999999999999999999999999999999999999 888776 56666666
No 63
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=2.7e-07 Score=72.24 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|+|+|++|||++++..+||++++|+ |++... ++++++..
T Consensus 177 ~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~---g~~~~~~~ 230 (343)
T PRK11153 177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ---GTVSEVFS 230 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 468889999987678999999999999999999999999 777665 46666643
No 64
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.50 E-value=4.4e-07 Score=67.62 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++ |+|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 170 ~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 221 (248)
T PRK03695 170 AALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS---GRRDEVL 221 (248)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---CCHHHHh
Confidence 4678888888654 8999999999999999999999998 777665 4555553
No 65
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=2.6e-07 Score=71.83 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++++ .|.|||+||||++++..+|||+++|+ |++... |+++++++
T Consensus 213 ~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~---g~~~~~~~ 265 (320)
T PRK13631 213 HEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKILKT---GTPYEIFT 265 (320)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 467888888865 48999999999999999999999999 877766 57777755
No 66
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.49 E-value=2.5e-07 Score=73.05 Aligned_cols=53 Identities=28% Similarity=0.375 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
++...|+++.++.|.|+|.||||..+|..++|||++|+ |++. |+|+|.++.+.
T Consensus 171 ~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~---Q~g~p~ely~~ 224 (338)
T COG3839 171 LMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ---QVGTPLELYER 224 (338)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeee---ecCChHHHhhC
Confidence 56678889988889999999999999999999999999 5444 45899999874
No 67
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.49 E-value=3e-07 Score=70.47 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
..+.++|++++++ |+|||++|||++++..+||++++|+ |++... ++++++.+.
T Consensus 161 ~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~l~~~ 214 (302)
T TIGR01188 161 RAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAE---GTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHHh
Confidence 4678888888754 8999999999999999999999998 877766 577777653
No 68
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.49 E-value=9.5e-08 Score=70.65 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee---ecCCchhHHHHHHhhhhhcCeeeeeCCCCCcc
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST---LANAPQNLLNGMNKFLSLLGITFRRDPNNFRP 82 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g---~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~ 82 (107)
+-++|.+++++ |.+|||+.||+|-..+-||++++++ |+..+.| ||.+|+.|..+| +++|++....+.|
T Consensus 171 Ldrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~f-------g~~frr~~~eghp 242 (248)
T COG4138 171 LDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAY-------GMNFRRLDIEGHP 242 (248)
T ss_pred HHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHh-------ccceEEEeecCCc
Confidence 44677788765 9999999999999999999999999 9988888 899999988855 6677777766666
Q ss_pred eee
Q psy1687 83 RIN 85 (107)
Q Consensus 83 ~i~ 85 (107)
.+.
T Consensus 243 ~l~ 245 (248)
T COG4138 243 MLI 245 (248)
T ss_pred eee
Confidence 553
No 69
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.49 E-value=2.6e-07 Score=68.46 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.|++.++.+++++++.|++||||.++.|..++||+++++ |++.++|
T Consensus 166 ~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 166 AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeec
Confidence 589999999999999999999999999999999999999 9888875
No 70
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=3.2e-07 Score=67.72 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++.|+|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 173 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 225 (239)
T cd03296 173 KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV---GTPDEVY 225 (239)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe---cCHHHHh
Confidence 467888888876668999999999999999999999998 776655 4666554
No 71
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.48 E-value=2.6e-07 Score=75.51 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|++++++.|+|||+||||++++..+||++++|+ |++... ++++++.
T Consensus 462 ~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 514 (529)
T PRK15134 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ---GDCERVF 514 (529)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE---cCHHHHh
Confidence 568899999987668999999999999999999999998 877665 4666654
No 72
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.47 E-value=3.6e-07 Score=71.75 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|+|+|+||||++++..+||++++|+ |++... ++++++.+
T Consensus 168 ~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 221 (354)
T TIGR02142 168 YEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA---GPIAEVWA 221 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE---CCHHHHhc
Confidence 467889999977668999999999999999999999999 776655 57777654
No 73
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=3.3e-07 Score=73.54 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|++++++.|+|+|+||||++++..+||++++|+ |++... ++++++..
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~---g~~~~l~~ 254 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQV---GTPDEILN 254 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEec---CCHHHHHh
Confidence 467888988876668999999999999999999999999 766655 57777654
No 74
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=4.4e-07 Score=67.21 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++.|.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 168 ~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 220 (241)
T PRK14250 168 EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY---AKTYDFF 220 (241)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe---CCHHHHh
Confidence 467788888876568999999999999999999999999 766554 5666654
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.46 E-value=3.7e-07 Score=67.23 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
..+.++|++++++.|+|+|+||||++++..+||++++|+ |+.... ++++++
T Consensus 182 ~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~ 233 (243)
T TIGR02315 182 KQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD---GAPSEL 233 (243)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec---CCHHHh
Confidence 467888888876668999999999999999999999998 766654 466655
No 76
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=3.9e-07 Score=69.40 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++++ .|.|||++|||++++..+||++++|+ |++... ++++++.+
T Consensus 182 ~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~ 234 (287)
T PRK13641 182 KEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH---ASPKEIFS 234 (287)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 467888888865 48999999999999999999999999 777666 56776654
No 77
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.45 E-value=5.1e-07 Score=66.34 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|+|||++|||++++..+||++++|+ |++... ++++++..
T Consensus 162 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 215 (230)
T TIGR02770 162 ARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER---GTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 457788888876568999999999999999999999999 777665 46666643
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=4.5e-07 Score=68.80 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|+|||+||||++++ .+|||+++|+ |+.... ++++++.+
T Consensus 177 ~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~---g~~~~~~~ 229 (279)
T PRK13650 177 LELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVEST---STPRELFS 229 (279)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEE---CCHHHHHc
Confidence 4678899999876699999999999999 5899999998 776665 56766654
No 79
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=4.5e-07 Score=66.74 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++ |.|+|++|||++++..+|||+++|+ |++... ++++++.+
T Consensus 174 ~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 226 (237)
T PRK11614 174 QQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLE---DTGDALLA 226 (237)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee---CCHHHHhc
Confidence 4677888888654 8999999999999999999999998 877666 57776653
No 80
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.44 E-value=4e-07 Score=68.41 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|+|||+||||++++..+||++++|+ |++... ++++++..
T Consensus 187 ~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 240 (265)
T TIGR02769 187 AVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE---CDVAQLLS 240 (265)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE---CCHHHHcC
Confidence 457888998876668999999999999999999999999 766655 56666654
No 81
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.44 E-value=4.4e-07 Score=68.14 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
.++++++++++++.|+|+|+||||...|. +|||++.|. |+
T Consensus 179 ~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~ 219 (226)
T COG1136 179 KEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCe
Confidence 57999999999988999999999999995 899999998 65
No 82
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=5.7e-07 Score=66.76 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|.|||++|||++++..+||++++|+ |++... ++++++.+
T Consensus 190 ~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~---~~~~~~~~ 243 (255)
T PRK11300 190 KELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN---GTPEEIRN 243 (255)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec---CCHHHHhh
Confidence 467788888876568999999999999999999999999 776655 46666543
No 83
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.44 E-value=4.6e-07 Score=66.46 Aligned_cols=50 Identities=26% Similarity=0.376 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
..+.++|+++++ .|+|+|+||||++++..+||++++|+ |++... ++++++
T Consensus 180 ~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~ 230 (236)
T cd03219 180 EELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE---GTPDEV 230 (236)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee---cCHHHh
Confidence 567888888876 58999999999999999999999998 766554 466554
No 84
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.44 E-value=4.7e-07 Score=68.25 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|.|+|+||||++++..+||++++|+ |++... ++++++.+
T Consensus 180 ~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~ 233 (269)
T PRK11831 180 GVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH---GSAQALQA 233 (269)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe---CCHHHHhc
Confidence 467888998876668999999999999999999999998 776665 46666553
No 85
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=5.1e-07 Score=66.18 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
..+.++|++++++.|+|+|++|||++++..+||++++|+ |++... ++++++
T Consensus 177 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~ 228 (233)
T cd03258 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE---GTVEEV 228 (233)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cCHHHH
Confidence 467788888876668999999999999999999999998 776655 455544
No 86
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.44 E-value=4.4e-07 Score=69.63 Aligned_cols=52 Identities=27% Similarity=0.407 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++++ .|.|||++|||++++..+||++++|+ |++... ++++++.+
T Consensus 172 ~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 224 (303)
T TIGR01288 172 HLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAE---GRPHALID 224 (303)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 467888888865 48999999999999999999999998 877666 57777654
No 87
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.44 E-value=1.2e-06 Score=66.48 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++.++.|+|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 191 ~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 243 (272)
T PRK13547 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH---GAPADVL 243 (272)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe---cCHHHHc
Confidence 567888998876668999999999999999999999998 777666 4555553
No 88
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=5e-07 Score=68.71 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++.++.|+|||+||||++++..+||++++|+ |++... ++++++.+
T Consensus 187 ~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 240 (289)
T PRK13645 187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI---GSPFEIFS 240 (289)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 467788888876668999999999999999999999999 776655 46666644
No 89
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=5e-07 Score=65.82 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
..+.++|+++.++.|+|+|++|||++++..+||++++|+ |++...
T Consensus 168 ~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 168 AHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 457788888876668999999999999999999999999 766554
No 90
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.43 E-value=5.1e-07 Score=67.67 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|.|||++|||++++..+||++++|+ |++... ++++++.+
T Consensus 177 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 230 (258)
T PRK13548 177 HHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD---GTPAEVLT 230 (258)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee---CCHHHHhC
Confidence 467888998874568999999999999999999999998 766655 46666543
No 91
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.43 E-value=6.8e-07 Score=65.24 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..++++|+++++ .|.|+|++|||++++..+||++++|+ |++...|
T Consensus 161 ~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 161 QELRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206 (223)
T ss_pred HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 467888888865 48999999999999999999999998 7766665
No 92
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.43 E-value=5.1e-07 Score=73.63 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|+|||+||||++++..+|||+++|+ |++... ++++++.+
T Consensus 464 ~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 517 (520)
T TIGR03269 464 VDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI---GDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 468889999977678999999999999999999999998 776655 56666644
No 93
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=4.8e-07 Score=68.46 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++ |.|||+||||++++..+||++++|+ |+.... ++++++.+
T Consensus 174 ~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 226 (275)
T PRK13639 174 SQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKE---GTPKEVFS 226 (275)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 4678888888764 8999999999999999999999998 777666 57777654
No 94
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.43 E-value=4.2e-07 Score=74.30 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|++++++.|+|||+||||++++..+|||+++|+ |++... ++++++.
T Consensus 193 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~---g~~~~~~ 245 (529)
T PRK15134 193 AQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ---NRAATLF 245 (529)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence 467889999977668999999999999999999999999 776655 4565553
No 95
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=6.1e-07 Score=67.71 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|++++++.|+|+|++|||++++..+||++++|+ |++... ++++++.+
T Consensus 197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~ 250 (269)
T cd03294 197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV---GTPEEILT 250 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHHHh
Confidence 467888888876668999999999999999999999999 766655 56766654
No 96
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=6.7e-07 Score=65.73 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|.|+|++|||++++..+||++++|+ |++... ++++++.+
T Consensus 166 ~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~---g~~~~~~~ 219 (232)
T PRK10771 166 QEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD---GPTDELLS 219 (232)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 457788888876668999999999999999999999998 776655 56666554
No 97
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=5.1e-07 Score=65.31 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..++++|++++++.|.|+|++|||++++..+||++++|+ |++.
T Consensus 165 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 165 AEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 567888998876668999999999999999999999999 6544
No 98
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.41 E-value=6e-07 Score=65.70 Aligned_cols=51 Identities=29% Similarity=0.280 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
.++.++|++++++.|.|+|++|||++++..+||++++|+ |+.... ++++++
T Consensus 168 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~---~~~~~~ 219 (230)
T TIGR03410 168 KDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS---GAGDEL 219 (230)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHc
Confidence 467888888876568999999999999999999999999 776655 455555
No 99
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.41 E-value=5.5e-07 Score=65.09 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
..++++|++++++.|+|+|++|||++++..+||++++|+ |+...
T Consensus 167 ~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 167 VQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 467889999877668999999999999999999999998 65544
No 100
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.41 E-value=7.3e-07 Score=67.74 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=44.9
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhh
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFL 66 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l 66 (107)
.+.+.++.+ .++|+|+||||++.+..+|||++.|+ |++... |+|+++.+.|+...
T Consensus 187 ~~rl~e~~~-~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~---G~~~~vi~~Y~~~~ 242 (249)
T COG1134 187 LERLNELVE-KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME---GSPEEVIPAYEEDL 242 (249)
T ss_pred HHHHHHHHH-cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEc---CCHHHHHHHHHHhh
Confidence 445566644 36999999999999999999999999 877777 69999998875543
No 101
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.41 E-value=7.3e-07 Score=66.96 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++.++.|.|+|++|||++++..+||++++|+ |++... ++++++..
T Consensus 180 ~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 233 (265)
T PRK10253 180 IDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ---GAPKEIVT 233 (265)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhh
Confidence 467888888876568999999999999999999999998 776665 46666543
No 102
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.41 E-value=6.8e-07 Score=66.85 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
..++++|++++++.|+|+|++|||++++..+||++++|+ |++... ++++++
T Consensus 189 ~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~---g~~~~~ 240 (262)
T PRK09984 189 RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD---GSSQQF 240 (262)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHh
Confidence 467888999876668999999999999999999999999 776665 466655
No 103
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.40 E-value=6.8e-07 Score=66.72 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|++++++.|.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 188 ~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~---~~~~~~~ 240 (258)
T PRK11701 188 ARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES---GLTDQVL 240 (258)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence 467888888876668999999999999999999999999 766655 5666654
No 104
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.40 E-value=7.4e-07 Score=66.22 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++.|.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 183 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 235 (252)
T TIGR03005 183 GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ---GKPDEIF 235 (252)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence 467888988877668999999999999999999999999 776655 4555554
No 105
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.40 E-value=6.9e-07 Score=66.65 Aligned_cols=51 Identities=27% Similarity=0.388 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++++ .|+|+|+||||++++..+|||+++|+ |++... ++++++.
T Consensus 189 ~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 240 (257)
T PRK10619 189 GEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE---GAPEQLF 240 (257)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHhh
Confidence 467888888865 49999999999999999999999999 877765 4666554
No 106
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.40 E-value=5.2e-07 Score=73.37 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
-.++++|++|.+++|.+.+|++||+..+..+||+++||+ |+++-+ |+.+++++
T Consensus 463 aQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~---G~~~~if~ 516 (534)
T COG4172 463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ---GPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee---CCHHHHhc
Confidence 368999999999999999999999999999999999999 888877 46666665
No 107
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.39 E-value=7.8e-07 Score=64.59 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
.+++++|+++++ .|.|+|++|||++++..+||++++|+ |++... ++++++
T Consensus 169 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~ 219 (222)
T cd03224 169 EEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLE---GTAAEL 219 (222)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe---CCHHHH
Confidence 467888888875 58999999999999999999999999 776654 455443
No 108
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=6.7e-07 Score=64.74 Aligned_cols=43 Identities=26% Similarity=0.208 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..++++|++++++.|.|||++|||++++..+||++++|+ |++.
T Consensus 167 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 467888888876568999999999999999999999998 6544
No 109
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=7.1e-07 Score=64.75 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
.++.++|++++++.|.|+|++|||++++..+||++++|+ |++..
T Consensus 168 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 168 LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 467888988877668999999999999999999999998 76544
No 110
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.38 E-value=8.2e-07 Score=66.23 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|.|||++|||++++..+||++++|+ |+.... ++++++.+
T Consensus 177 ~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~~ 230 (254)
T PRK10418 177 ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ---GDVETLFN 230 (254)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe---cCHHHHhh
Confidence 457788888876668999999999999999999999999 766554 56666543
No 111
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=9.5e-07 Score=65.29 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|++++++.|.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 172 ~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 224 (242)
T cd03295 172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV---GTPDEIL 224 (242)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---cCHHHHH
Confidence 467788888876568999999999999999999999999 776655 4555553
No 112
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=9.9e-07 Score=66.13 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec------CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE------GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~------g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|.|+|+||||++++..+||++++|+ |+++.. ++++++.+
T Consensus 187 ~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~---~~~~~~~~ 245 (261)
T PRK14258 187 MKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF---GLTKKIFN 245 (261)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe---CCHHHHHh
Confidence 467788888865558999999999999999999999999 333333 57777654
No 113
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.37 E-value=7.6e-07 Score=64.79 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
.++.++|++++++.|.|||++|||++++..+||++++|+ |++.
T Consensus 182 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 182 AQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 467888988876558999999999999999999999999 6543
No 114
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=8.8e-07 Score=66.74 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++ |.|+|+||||++++..+||++++|+ |++... ++++++..
T Consensus 173 ~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 225 (271)
T PRK13638 173 TQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTH---GAPGEVFA 225 (271)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 4678889888754 8999999999999999999999998 776666 46666544
No 115
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.37 E-value=6.8e-07 Score=65.30 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
..++++|++++++ +|+|++|||++++..+||++++|+ |++...
T Consensus 178 ~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 178 AKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred HHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 4678888888654 899999999999999999999999 766555
No 116
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.37 E-value=9.2e-07 Score=65.17 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..+.++|++++++.|+|+|+||||++++..+||++++|+ |+++..|
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 467888888877668999999999999999999999998 7766553
No 117
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=9.2e-07 Score=66.12 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++ + ++|+|+||||++++..+||++++|+ |++... ++++++.+
T Consensus 191 ~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 242 (258)
T PRK14268 191 ARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF---GQTRQIFH 242 (258)
T ss_pred HHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 46778888885 3 7999999999999999999999998 776655 56766643
No 118
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.37 E-value=8.5e-07 Score=66.77 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|.|||+||||++++..+||++++|+ |++... ++++++.+
T Consensus 186 ~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 239 (267)
T PRK15112 186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER---GSTADVLA 239 (267)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec---CCHHHHhc
Confidence 467788888876668999999999999999999999999 766655 46666544
No 119
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=9.2e-07 Score=66.43 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|++++++.|.|+|++|||++++..+||++++|+ |++... ++++++.+
T Consensus 184 ~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~---~~~~~~~~ 237 (265)
T PRK10575 184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ---GTPAELMR 237 (265)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe---cCHHHhcC
Confidence 467888888876568999999999999999999999998 776655 45665543
No 120
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.36 E-value=1.3e-06 Score=66.23 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSL 68 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~ 68 (107)
..++++|.++.+ .|.|+|++|||++++..+||++++|+ |++... ++++++.+.+..+++.
T Consensus 180 ~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~---g~~~~~~~~~~~~~~~ 240 (264)
T PRK13546 180 QKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDY---GELDDVLPKYEAFLND 240 (264)
T ss_pred HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEe---CCHHHHHHHhHHHHHH
Confidence 357778888754 58999999999999999999999998 766655 6888887765544443
No 121
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.36 E-value=1.4e-06 Score=71.78 Aligned_cols=72 Identities=29% Similarity=0.486 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhc----CeeeeeCC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLL----GITFRRDP 77 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~----~i~~~~~~ 77 (107)
+.+.++|++|++. +++|++|.|||.....++|-|.++.|.+++.|-+..|..+..+.|.|++++ +++|+..+
T Consensus 250 l~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG~pg~YGvvs~p~svr~gIN~yL~Gyl~~EN~R~R~~~ 325 (591)
T COG1245 250 LNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPKSVRVGINEYLKGYLPEENVRFRPEE 325 (591)
T ss_pred HHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEecCCccceEeccchHHHHHHHHHHhccCchhcccccccc
Confidence 3567889999876 899999999999999999999999999999999999999999999888876 67776554
No 122
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.36 E-value=2.7e-06 Score=63.44 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++.+ .|.|+|++|||++++..+||++++|+ |++... ++++++..
T Consensus 174 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 226 (256)
T TIGR03873 174 LETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA---GPPREVLT 226 (256)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe---cCHHHhhC
Confidence 467888888865 48999999999999999999999998 877765 46666543
No 123
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=8.6e-07 Score=67.24 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
..++++|++++++.|.|+|+||||++++.. ||++++|+ |++... ++++++...
T Consensus 181 ~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~---g~~~~~~~~ 234 (280)
T PRK13633 181 REVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVME---GTPKEIFKE 234 (280)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEe---cCHHHHhcC
Confidence 467888998876669999999999999976 99999998 776665 578777653
No 124
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.35 E-value=8e-07 Score=66.06 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
-|+++.+++|+++ |.|+++|||.|.+|...+..++++. |.+--+ |+|++++.+
T Consensus 189 gEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~---G~P~qvf~n 242 (256)
T COG4598 189 GEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE---GPPEQVFGN 242 (256)
T ss_pred HHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceeccc---CChHHHhcC
Confidence 4899999999876 9999999999999999999999999 655444 799998763
No 125
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=1.3e-06 Score=65.56 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCch
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQ 56 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~ 56 (107)
..+-.+|.++|+++|+.+++||||+++|..+++|++||++.|+..-+..+|+
T Consensus 169 e~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 169 EQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 3566788999999999999999999999999999999997777644334443
No 126
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.35 E-value=1.1e-06 Score=65.04 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++ |.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 181 ~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 232 (250)
T PRK11264 181 GEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ---GPAKALF 232 (250)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence 4677888888654 8999999999999999999999998 776655 4666554
No 127
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.35 E-value=1.1e-06 Score=64.26 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.++.++|+++++ .|+|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 170 ~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 221 (232)
T cd03218 170 QDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAE---GTPEEIA 221 (232)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE---eCHHHhh
Confidence 467888888875 48999999999999999999999999 776655 4555543
No 128
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.33 E-value=1.3e-06 Score=64.90 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++.++.|.|+|+||||++++..+||++++|+ |+.... ++++++.
T Consensus 185 ~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~---~~~~~~~ 237 (253)
T TIGR02323 185 ARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES---GLTDQVL 237 (253)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE---CCHHHHh
Confidence 467788888876668999999999999999999999999 766655 4555543
No 129
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.32 E-value=1.3e-06 Score=64.33 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++++ .|+|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 173 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 224 (240)
T PRK09493 173 HEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED---GDPQVLI 224 (240)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee---CCHHHHh
Confidence 467788888865 48999999999999999999999999 776655 4555443
No 130
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.32 E-value=1.5e-06 Score=65.12 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++.|.|+|+||||++++..+||++++|++++... ++++++.
T Consensus 157 ~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~---g~~~~~~ 208 (251)
T PRK09544 157 VALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCS---GTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEee---CCHHHHh
Confidence 467788888876558999999999999999999999999755554 4666654
No 131
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.32 E-value=1.3e-06 Score=71.21 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
..++++|++++++.|+|||+||||++++..+||++++|+ |++... ++++++.+.
T Consensus 205 ~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~~ 259 (520)
T TIGR03269 205 KLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE---GTPDEVVAV 259 (520)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeee---cCHHHHHHH
Confidence 467888999977668999999999999999999999998 776654 566666553
No 132
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=1.2e-06 Score=66.54 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|+|||++|||++++ .+||++++|+ |+.... ++++++.+
T Consensus 180 ~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~---g~~~~~~~ 232 (282)
T PRK13640 180 EQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQ---GSPVEIFS 232 (282)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 4678888888766689999999999998 4799999998 877766 56776654
No 133
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=1.8e-06 Score=63.75 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++.+.|.|+|++|||++++..+||++++|+ |+.... ++++++.+
T Consensus 166 ~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 219 (235)
T cd03299 166 EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV---GKPEEVFK 219 (235)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---cCHHHHHh
Confidence 467788888876668999999999999999999999998 776655 46665543
No 134
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=1.3e-06 Score=65.97 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++ |+|||+||||++++..+||++++|+ |++... ++++++.+
T Consensus 182 ~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 234 (280)
T PRK13649 182 KELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLS---GKPKDIFQ 234 (280)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 4577888888654 8999999999999999999999999 766655 56766654
No 135
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.30 E-value=1.4e-06 Score=65.76 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.+.|+|++|||++++..+||++++|+ |++... ++++++.+
T Consensus 188 ~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~---g~~~~~~~ 241 (268)
T PRK10419 188 AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET---QPVGDKLT 241 (268)
T ss_pred HHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee---CChhhccC
Confidence 457888988877668999999999999999999999999 766655 56666553
No 136
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.29 E-value=1.5e-06 Score=63.80 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++.+ .|+|+|++|||++++..+||++++++|++... ++++++.+
T Consensus 150 ~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~---~~~~~~~~ 201 (223)
T TIGR03771 150 ELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVVLLNGRVIAD---GTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEECCEEEee---cCHHHhcC
Confidence 467888888865 48999999999999999999999998777665 46666544
No 137
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=1.6e-06 Score=64.38 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++. + +.|||+||||++++..+|||+++|+ |++... ++++++.+
T Consensus 183 ~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~---~~~~~~~~ 234 (250)
T PRK14245 183 AKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY---DDTKKIFT 234 (250)
T ss_pred HHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE---CCHHHHhc
Confidence 46788888884 3 7899999999999999999999999 777665 56666643
No 138
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=4.8e-06 Score=62.05 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++ |+|+|++|||++++..+||++++|+ |++... ++++++.+
T Consensus 175 ~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 227 (255)
T PRK11231 175 VELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ---GTPEEVMT 227 (255)
T ss_pred HHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEECCeEEEE---cCHHHhcC
Confidence 4577888888654 8999999999999999999999998 777665 45555543
No 139
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=1.9e-06 Score=64.13 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++ + +.|+|++|||++++..+|||+++|+ |++... ++++++..
T Consensus 187 ~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 238 (254)
T PRK14273 187 GKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE---SSTDELFF 238 (254)
T ss_pred HHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 46788888885 3 6899999999999999999999999 776665 56666653
No 140
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.28 E-value=1.6e-06 Score=64.31 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++. + ++|||+||||++++..+||++++|+ |++... ++++++.
T Consensus 186 ~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~ 236 (253)
T PRK14242 186 QKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV---GPTEQIF 236 (253)
T ss_pred HHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 56788888884 3 6899999999999999999999999 776655 4666654
No 141
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=1.9e-06 Score=65.27 Aligned_cols=52 Identities=27% Similarity=0.361 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|.|+|++|||++++. .||++++|+ |+.... ++++++..
T Consensus 177 ~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~~~~ 229 (277)
T PRK13642 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKE---AAPSELFA 229 (277)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEe---CCHHHHhc
Confidence 46788898887766999999999999996 699999999 876665 56777654
No 142
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.28 E-value=2.1e-06 Score=62.14 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~ 48 (107)
..+.++|+++++ .|.|+|+||||++++..+||++++|+++.+.
T Consensus 169 ~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~~ 211 (213)
T cd03235 169 EDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211 (213)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCcEee
Confidence 467888888876 5899999999999999999999999854443
No 143
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=1.2e-06 Score=71.27 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.+++++|++++++ |+|||+||||++++..+|||+++|+ |++...|
T Consensus 442 ~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 442 YEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 4678889988764 9999999999999999999999998 8777664
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.27 E-value=2.3e-06 Score=63.00 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.|.|+|++|||++++.. ||++++|+ |++... ++++++.+
T Consensus 169 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~---~~~~~~~~ 221 (236)
T TIGR03864 169 AAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLAD---GAAAELRG 221 (236)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEe---CCHHHHHH
Confidence 567888988876568999999999999975 99999998 766655 56666654
No 145
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.27 E-value=2.5e-06 Score=62.76 Aligned_cols=53 Identities=25% Similarity=0.235 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|++++++.|.|+|++|||++++..+||++++|+ |+.... ++++++..
T Consensus 167 ~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~---~~~~~~~~ 220 (232)
T cd03300 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI---GTPEEIYE 220 (232)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec---CCHHHHHh
Confidence 467788888876568999999999999999999999998 766554 45555543
No 146
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.27 E-value=1.8e-06 Score=66.30 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|++++ + ++|||++||+++++..+|||+++|+ |++... ++++++.+
T Consensus 170 ~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 221 (301)
T TIGR03522 170 VEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVAD---KKLDELSA 221 (301)
T ss_pred HHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHH
Confidence 46778888885 3 6999999999999999999999998 877766 57777755
No 147
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=2.4e-06 Score=62.26 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec---CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE---GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~---g~~~~~ 49 (107)
.++.++|++++++.|.|+|+||||++++..+||++++|+ |++...
T Consensus 168 ~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 168 EQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 467888888876668999999999999999999999998 555443
No 148
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=2.4e-06 Score=63.04 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++++ .|.|+|++|||++++..+||++++|+ |++... ++++++.+
T Consensus 174 ~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~~ 226 (241)
T PRK10895 174 IDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAH---GTPTEILQ 226 (241)
T ss_pred HHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee---CCHHHHhc
Confidence 456778888864 48999999999999999999999999 776655 56666543
No 149
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.26 E-value=2.3e-06 Score=62.16 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..+.++|+++.++.+.|+|+||||++++..+||++++|+ |++...|
T Consensus 165 ~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 165 EEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 467888888876668999999999999999999999998 7665543
No 150
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.26 E-value=2.3e-06 Score=63.02 Aligned_cols=50 Identities=26% Similarity=0.352 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++.+ ++|+|++|||++++..+||++++|+ |+.... ++++++.
T Consensus 180 ~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~---~~~~~~~ 230 (242)
T TIGR03411 180 EKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE---GSLDQVQ 230 (242)
T ss_pred HHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEee---CCHHHHh
Confidence 467888888854 6899999999999999999999998 776665 4555553
No 151
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.25 E-value=2e-06 Score=62.03 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
..++++|+++++ .|+|+|++|||++++..+||++++|+ |++..
T Consensus 163 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 163 KELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 467788888875 58999999999999999999999998 65443
No 152
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=2.6e-06 Score=63.27 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++++ ++|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 186 ~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 236 (253)
T PRK14267 186 AKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV---GPTRKVF 236 (253)
T ss_pred HHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEe---CCHHHHH
Confidence 467788888853 5899999999999999999999998 776665 5666654
No 153
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.25 E-value=2.1e-06 Score=64.78 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..++++|++++++.++|+|+||||++++..+||++++|+ |++...|
T Consensus 170 ~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 467888888876668999999999999999999999998 7766554
No 154
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.25 E-value=2.7e-06 Score=70.86 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLL 69 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~ 69 (107)
..++++|+++++ .|.|+|+||||++++..+||++++|+ |++... ++++++...+..+++.+
T Consensus 180 ~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~---G~~~el~~~~~~~~~~~ 241 (549)
T PRK13545 180 KKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY---GDIKEVVDHYDEFLKKY 241 (549)
T ss_pred HHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHhhHHHHHHHH
Confidence 357788888754 48999999999999999999999998 766655 67888877666665533
No 155
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.24 E-value=2.9e-06 Score=61.52 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|++++++ |.|+|+||||++++..+||++++|+ |+
T Consensus 175 ~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 175 RDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 4677888888654 8999999999999999999999998 54
No 156
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=2.1e-06 Score=65.19 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|.|||+||||++++. .||++++|+ |+.... ++++++..
T Consensus 177 ~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~~~~ 229 (279)
T PRK13635 177 REVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEE---GTPEEIFK 229 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE---CCHHHHhc
Confidence 46788999998766899999999999996 599999998 776655 56666654
No 157
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.24 E-value=1.9e-06 Score=70.11 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
.+++++|++++++ |+|||+||||++++..+||++++|+ |++...| +++++
T Consensus 182 ~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g---~~~~~ 232 (510)
T PRK09700 182 DYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG---MVSDV 232 (510)
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeec---chhhC
Confidence 4688899999764 8999999999999999999999998 8776654 55544
No 158
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.24 E-value=2.7e-06 Score=62.99 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++.+ +.|+|++|||++++..+|||+++|+ |++... ++++++.
T Consensus 185 ~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 235 (252)
T PRK14239 185 GKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY---NDTKQMF 235 (252)
T ss_pred HHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 467788888853 5899999999999999999999999 776655 4666654
No 159
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.24 E-value=2.5e-06 Score=62.68 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCchh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQN 57 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~~ 57 (107)
..+.++|+++.+ .|.|||+||||++++..+ ||++++|+ |++... +++++
T Consensus 181 ~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~---g~~~~ 231 (243)
T TIGR01978 181 KIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS---GDVEL 231 (243)
T ss_pred HHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe---cCHHH
Confidence 467888888865 489999999999999999 89999998 766655 45553
No 160
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.23 E-value=2.8e-06 Score=62.97 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++++ +.|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 181 ~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 231 (247)
T TIGR00972 181 GKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEY---GPTEQIF 231 (247)
T ss_pred HHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 467788888865 4899999999999999999999999 776655 4666654
No 161
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=2.3e-06 Score=66.89 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|+++.+ ++|+|+|||+++.+..+||||++|+ |++... |+|+++.+
T Consensus 263 ~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~---g~~~~l~~ 313 (329)
T PRK14257 263 KIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA---GETKTIFI 313 (329)
T ss_pred HHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 46777877753 6899999999999999999999999 766655 68888764
No 162
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=2.7e-06 Score=63.57 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++. + +.|+|+||||++++..+|||+++|+ |++... ++++++.+
T Consensus 192 ~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 243 (259)
T PRK14274 192 RKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC---NDTNKMFS 243 (259)
T ss_pred HHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhh
Confidence 45678888875 3 6899999999999999999999999 777665 57776643
No 163
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=3e-06 Score=62.83 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++.+ ++|+|++|||++.+..+||++++|+ |++... ++++++.+
T Consensus 183 ~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~ 234 (250)
T PRK14262 183 QRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY---GPTREIVE 234 (250)
T ss_pred HHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cCHHHHHh
Confidence 467888888853 6899999999999999999999999 877665 56666643
No 164
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.22 E-value=2e-06 Score=69.98 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.+++++|++++++ |.|||+||||++++..+||++++|+ |++...|
T Consensus 433 ~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 433 HEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 5788899999764 8999999999999999999999998 8777664
No 165
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.22 E-value=2.1e-06 Score=66.70 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM 62 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~ 62 (107)
.+.+.|+.++++.+.||++.||+++.+..|||||+.|+ |+.+.. |+-+.|.+.|
T Consensus 194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d---g~l~~l~~~f 248 (325)
T COG4586 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD---GTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec---ccHHHHHHHh
Confidence 57889999999999999999999999999999999999 999988 4777777765
No 166
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.22 E-value=2.6e-06 Score=62.97 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
..+.++|++++++.+.|+|+||||++++..+||++++|+ |++..
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 467888888876668999999999999999999999998 65443
No 167
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=3e-06 Score=62.86 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++. + ++|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 179 ~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 229 (246)
T PRK14269 179 GVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEF---GESKEFF 229 (246)
T ss_pred HHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEE---CCHHHHH
Confidence 46778888875 3 8999999999999999999999999 777665 4666554
No 168
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.22 E-value=3.7e-06 Score=60.70 Aligned_cols=38 Identities=37% Similarity=0.498 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..++++|++++++ |.|+|++|||++++..+||++++|+
T Consensus 171 ~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~ 208 (211)
T cd03225 171 RELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLE 208 (211)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 4678888888765 8999999999999999999999998
No 169
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=2.9e-06 Score=62.97 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++. + ++|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 186 ~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 236 (251)
T PRK14244 186 NVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY---NTTQEIF 236 (251)
T ss_pred HHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe---CCHHHHh
Confidence 45778888874 3 7999999999999999999999999 776655 4555554
No 170
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=2.2e-06 Score=64.46 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|+|+|+||||++++.. |||+++|+ |++... ++++++.+
T Consensus 179 ~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~---g~~~~~~~ 231 (269)
T PRK13648 179 QNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKE---GTPTEIFD 231 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEe---cCHHHHhc
Confidence 467788888876568999999999999975 99999999 776655 56776654
No 171
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.21 E-value=3.2e-06 Score=60.94 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|++++++ |.|+|++|||++++..+||++++|+ |+
T Consensus 163 ~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~ 203 (205)
T cd03226 163 ERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGA 203 (205)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4678888888654 8999999999999999999999998 54
No 172
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=3.4e-06 Score=62.69 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++.+ ++|+|+||||++++..+||++++|+ |++... ++++++..
T Consensus 185 ~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 236 (252)
T PRK14256 185 LKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC---GETKKIFT 236 (252)
T ss_pred HHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 567888888864 5899999999999999999999999 766655 56666543
No 173
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.20 E-value=3.7e-06 Score=62.09 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++++.+.|+|++||+++++..+||++++|+ |+.... ++++++.+
T Consensus 167 ~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~---~~~~~~~~ 220 (237)
T TIGR00968 167 KELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI---GSPDEVYD 220 (237)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe---cCHHHHHc
Confidence 467788888876558999999999999999999999999 766554 56666653
No 174
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.20 E-value=2.3e-06 Score=69.87 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++ |.|||+||||++++..+|||+++|+ |++...| +++++.
T Consensus 440 ~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~---~~~~~~ 491 (510)
T PRK15439 440 NDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGAL---TGAAIN 491 (510)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE---ccccCC
Confidence 4678899998764 8999999999999999999999998 8777654 555543
No 175
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.20 E-value=3.1e-06 Score=61.37 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..+.++|+++++ .|.|+|+||||++++..+||++++|+ |++.
T Consensus 173 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 173 RALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 467888888865 48999999999999999999999998 6544
No 176
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=3.8e-06 Score=62.25 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++ + +.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 183 ~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 233 (250)
T PRK14247 183 AKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEW---GPTREVF 233 (250)
T ss_pred HHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE---CCHHHHH
Confidence 46778888874 3 7999999999999999999999999 776655 4666554
No 177
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=3.4e-06 Score=63.39 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.++.++|+++++ +.|||++|||++++..+|||+++|+ |++... ++++++.
T Consensus 201 ~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~ 251 (268)
T PRK14248 201 AKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY---DQTEQIF 251 (268)
T ss_pred HHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 467788888853 5899999999999999999999998 776665 4666554
No 178
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=3.7e-06 Score=62.28 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++ + ++|+|++|||++++..+|||+++|+ |++... ++++++.+
T Consensus 185 ~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 236 (252)
T PRK14272 185 ARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH---GPTDQLFT 236 (252)
T ss_pred HHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 46778888885 3 6899999999999999999999998 776655 56666543
No 179
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=4e-06 Score=62.25 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++.+ +.|+|+||||++++..+|||+++|+ |++... ++++++.
T Consensus 184 ~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~ 234 (251)
T PRK14270 184 LKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF---NKTEKIF 234 (251)
T ss_pred HHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe---CCHHHHh
Confidence 467788888854 5899999999999999999999999 776665 4666654
No 180
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.19 E-value=4e-06 Score=60.79 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|++++++.|+|||+||||++++. +||++++|+ |+
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCc
Confidence 46788888887655899999999999987 999999998 54
No 181
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.19 E-value=3.1e-06 Score=68.53 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|++++++ |+|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 172 ~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~ 223 (490)
T PRK10938 172 QQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAET---GEREEIL 223 (490)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe---CCHHHHh
Confidence 4678889998764 8999999999999999999999998 877665 4555543
No 182
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.18 E-value=3.1e-06 Score=69.12 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.++.++|++++++ |+|||+||||++++..+||++++|+ |++... ++++++.
T Consensus 177 ~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 228 (510)
T PRK15439 177 ERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALS---GKTADLS 228 (510)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cChHHcC
Confidence 4678889888654 8999999999999999999999998 877665 4555553
No 183
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.18 E-value=3.6e-06 Score=61.86 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
.++.++|++++++ |+|+|++|||++++..+||++++|+ |++..
T Consensus 179 ~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 179 EKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 4678888888765 8999999999999999999999999 65443
No 184
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=3.5e-06 Score=63.79 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++++ .|.|+|++|||++++ ..||++++|+ |+.... ++++++..
T Consensus 173 ~~l~~~l~~l~~-~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~---g~~~~~~~ 224 (274)
T PRK13644 173 IAVLERIKKLHE-KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLE---GEPENVLS 224 (274)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEE---CCHHHHhc
Confidence 467788888865 499999999999998 5699999998 877665 46666544
No 185
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=4.5e-06 Score=61.91 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++.+ +.|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 184 ~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 234 (251)
T PRK14251 184 SEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA---GPTEEMF 234 (251)
T ss_pred HHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe---CCHHHHH
Confidence 467788888743 6899999999999999999999998 776655 4666554
No 186
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.17 E-value=3.4e-06 Score=68.58 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.+++++|++++++ |+|+|+||||++++..+||++++|+ |++...|
T Consensus 178 ~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 178 ESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 4678889998654 8999999999999999999999998 8776664
No 187
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=3.4e-06 Score=68.64 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
.+++++|+++++ .|+|+|+||||++++..+||++++|+ |++...| +++++
T Consensus 180 ~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~---~~~~~ 230 (506)
T PRK13549 180 AVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTR---PAAGM 230 (506)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeec---ccccC
Confidence 467888998865 48999999999999999999999999 8776664 44444
No 188
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=4.4e-06 Score=61.86 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++++ +.|||+||||++++..+||++++|+ |++... ++++++.
T Consensus 182 ~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 232 (249)
T PRK14253 182 HKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEH---DDTQVIF 232 (249)
T ss_pred HHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 467788888864 5899999999999999999999999 776655 4555543
No 189
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.16 E-value=5.4e-06 Score=59.93 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.++.++|+++++ .|+|+|+||||++++..+||++++|+
T Consensus 174 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 174 ERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEec
Confidence 467888888865 48999999999999999999999998
No 190
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.16 E-value=3.1e-06 Score=66.13 Aligned_cols=46 Identities=26% Similarity=0.274 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
-|++-.|.+|.++.++.|+.|||.+++++++||++++|+ |++.+.|
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g 211 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecC
Confidence 488999999999999999999999999999999999999 9888875
No 191
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.16 E-value=4.6e-06 Score=62.77 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++++ ++|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 200 ~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~ 250 (267)
T PRK14235 200 AKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV---GDTEKMF 250 (267)
T ss_pred HHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe---CCHHHHH
Confidence 467888888853 6899999999999999999999999 776655 4666554
No 192
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.16 E-value=3.4e-06 Score=68.57 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..+.++|++++++ |.|+|+||||++++..+||++++|+ |++...|
T Consensus 432 ~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 432 KEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 5678899998765 9999999999999999999999998 7766654
No 193
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.15 E-value=5e-06 Score=62.72 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++++ |+|||++|||++++..+||++++++|++... ++++++.
T Consensus 179 ~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~~G~i~~~---g~~~~~~ 229 (272)
T PRK15056 179 ARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVKGTVLAS---GPTETTF 229 (272)
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEECCEEEee---cCHHhcc
Confidence 4678888888654 8999999999999999999998887877665 4666553
No 194
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.15 E-value=4.8e-06 Score=62.88 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++.+ +.|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 204 ~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~---g~~~~~~ 254 (271)
T PRK14238 204 LKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY---DDTDKIF 254 (271)
T ss_pred HHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 467788888853 6899999999999999999999999 776655 4555553
No 195
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=7.7e-06 Score=61.70 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC--------cceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP--------SISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~--------~~~g~v~tp~~L~~ 60 (107)
..+.++|++++ + +.|+|+||||++++..+||++++|+ |+. +...+.++++++.+
T Consensus 191 ~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 191 LKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred HHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 46778888884 3 6899999999999999999999998 222 11224467777654
No 196
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.14 E-value=4.8e-06 Score=61.69 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++. + +.|+|+||||++.+..+||++++|+ |++... ++++++.
T Consensus 183 ~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~ 233 (250)
T PRK14240 183 LKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF---GDTVDLF 233 (250)
T ss_pred HHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe---CCHHHHH
Confidence 45778888884 3 7899999999999999999999998 777665 4555554
No 197
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.14 E-value=5.4e-06 Score=58.86 Aligned_cols=42 Identities=31% Similarity=0.433 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP 46 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~ 46 (107)
..++++|++++++.+.|+|++|||++++..+||++++|+ |++
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 467788888866558899999999999999999999998 644
No 198
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.14 E-value=4.7e-06 Score=60.50 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQN 57 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~ 57 (107)
..++++|+++++ +.|+|++|||++++..+||++++|+ |++... +++++
T Consensus 170 ~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~---~~~~~ 218 (220)
T cd03263 170 RAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI---GSPQE 218 (220)
T ss_pred HHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec---CCHHH
Confidence 467788888864 5899999999999999999999998 766654 45544
No 199
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=5.7e-06 Score=62.04 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|++++++.|+|+|+||||++++..+||++++|+
T Consensus 165 ~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 165 EQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS 203 (255)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 467888888866568999999999999999999999997
No 200
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=7.3e-06 Score=57.87 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|++++++ |.|+|++|||++++..+||++++|+ |+
T Consensus 132 ~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 132 REFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 5678899998765 8999999999999999999999998 53
No 201
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=4.9e-06 Score=60.07 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..+.++|+++.++ |.|+|++|||++++..+||++++|+ |++.
T Consensus 165 ~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 165 ELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred HHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 4677888888654 8999999999999999999999998 6543
No 202
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=6.7e-06 Score=61.07 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++. .+.|||+||||++++..+||++++|+ |+.... ++++++..
T Consensus 184 ~~l~~~l~~~~--~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~ 235 (251)
T PRK14249 184 MRIEELMQELK--QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY---GRTGEIFS 235 (251)
T ss_pred HHHHHHHHHHh--cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe---CCHHHHHh
Confidence 45678888874 37999999999999999999999998 766655 56666543
No 203
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.13 E-value=6.3e-06 Score=61.07 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCch
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQ 56 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~ 56 (107)
.+++++|+++++ .|.|+|++|||++++..+ ||++++|+ |++... ++++
T Consensus 188 ~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~---~~~~ 237 (252)
T CHL00131 188 KIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT---GDAE 237 (252)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe---cChh
Confidence 467788888864 489999999999999887 99999998 777665 4665
No 204
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.12 E-value=4.8e-06 Score=61.51 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..++++|+++++ .|.|+|+||||++++ .+||++++|.
T Consensus 176 ~~l~~~l~~~~~-~g~tii~itH~~~~~-~~~d~i~~l~ 212 (226)
T cd03270 176 DRLIETLKRLRD-LGNTVLVVEHDEDTI-RAADHVIDIG 212 (226)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEeCHHHH-HhCCEEEEeC
Confidence 467888888865 489999999999997 5999999994
No 205
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=6.3e-06 Score=60.82 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
..+.++|+++.+ .|+|+|++|||++++..+||++++|+ |+.... ++++++
T Consensus 178 ~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~---~~~~~~ 228 (242)
T PRK11124 178 AQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQ---GDASCF 228 (242)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHh
Confidence 457788888864 48999999999999999999999998 766655 354443
No 206
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.12 E-value=6e-06 Score=62.14 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++. + +.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 200 ~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 250 (267)
T PRK14237 200 MQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY---DKTRNIF 250 (267)
T ss_pred HHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence 56778888884 3 6899999999999999999999999 776665 4666654
No 207
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=6.9e-06 Score=60.92 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++.+ +.|+|+||||++++..+||++++|+ |++... +++.++.
T Consensus 185 ~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~ 235 (252)
T PRK14255 185 TQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEF---ADTKQMF 235 (252)
T ss_pred HHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---CCHHHHh
Confidence 467788888854 4899999999999999999999999 776655 4555544
No 208
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.11 E-value=6.5e-06 Score=62.12 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++++ +.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 205 ~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 255 (272)
T PRK14236 205 LKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY---GDTDTLF 255 (272)
T ss_pred HHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec---CCHHHHh
Confidence 467888888863 6899999999999999999999999 776655 4555554
No 209
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.11 E-value=7.2e-06 Score=61.36 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++. + +.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 193 ~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 243 (260)
T PRK10744 193 GRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF---GNTDTIF 243 (260)
T ss_pred HHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 45778888884 3 6899999999999999999999999 776665 4555554
No 210
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.11 E-value=5.6e-06 Score=67.12 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..+.++|+++++ .|+|+|+||||++++..+||++++|+ |++...|
T Consensus 171 ~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~ 216 (491)
T PRK10982 171 NHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQ 216 (491)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeec
Confidence 467888888865 48999999999999999999999999 8777664
No 211
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=7e-06 Score=61.39 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec------CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE------GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~------g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++++ ++|+|++|||++++..+||++++|+ |+++.. ++++++.+
T Consensus 187 ~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~---~~~~~~~~ 243 (259)
T PRK14260 187 MKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF---GVTTQIFS 243 (259)
T ss_pred HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe---CCHHHHhc
Confidence 467788888853 5899999999999999999999996 655554 57777643
No 212
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=8.1e-06 Score=61.22 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++++ +.|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 198 ~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 248 (265)
T PRK14252 198 ASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEF---GATDTIF 248 (265)
T ss_pred HHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 467788888853 5899999999999999999999999 776665 4666654
No 213
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.11 E-value=6.1e-06 Score=66.95 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.++.++|+++++ .|+|||+||||++++..+||++++|+ |++...|
T Consensus 178 ~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 178 EILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 467888988865 48999999999999999999999998 8776654
No 214
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.10 E-value=6.3e-06 Score=62.25 Aligned_cols=53 Identities=26% Similarity=0.291 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+|.+.|++|+++.|+||++|.++.+.|..+|||.+||. |+++..| ++++|..
T Consensus 173 ~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G---~~~eL~~ 226 (237)
T COG0410 173 EEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSG---TAAELLA 226 (237)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEec---CHHHHhc
Confidence 479999999998878999999999999999999999999 9888884 7677655
No 215
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.10 E-value=8.3e-06 Score=67.07 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceee-c--CCchhHHHH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTL-A--NAPQNLLNG 61 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~-v--~tp~~L~~~ 61 (107)
..++++.+++++++ |+|||+|||-++++..+|||+-||. |+.+...+ + .++++|.+.
T Consensus 176 ~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~l 236 (501)
T COG3845 176 ADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAEL 236 (501)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHH
Confidence 35788999999765 9999999999999999999999999 87554332 2 246666664
No 216
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=7.2e-06 Score=62.52 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++. +.|||++|||++++..+||++++|+ |++... ++++++.
T Consensus 219 ~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~---g~~~~~~ 269 (286)
T PRK14275 219 AKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH---APTAQLF 269 (286)
T ss_pred HHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence 456778887753 5899999999999999999999999 776655 4666654
No 217
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.10 E-value=6.7e-06 Score=57.77 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP 46 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~ 46 (107)
..+.++|++++++ +.|+|++|||++++..+||++++|+ |++
T Consensus 119 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 119 ERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4677888888654 8999999999999999999999998 643
No 218
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.10 E-value=3.3e-06 Score=64.94 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM 62 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~ 62 (107)
+-+.+.++.+ .|.|||++||.|+.+..+||++.+|+ |+.+.+| +.+.+.+.|
T Consensus 169 Lk~~I~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G---~v~~ir~~~ 221 (300)
T COG4152 169 LKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG---TVEDIRRSF 221 (300)
T ss_pred HHHHHHHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEec---cHHHHHHhc
Confidence 4566777754 59999999999999999999999999 9999885 666666644
No 219
>PRK10908 cell division protein FtsE; Provisional
Probab=98.10 E-value=7.2e-06 Score=59.75 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP 46 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~ 46 (107)
.++.++|++++++ +.|+|++|||++++..+||++++|+ |++
T Consensus 174 ~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 174 EGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHL 215 (222)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4678888888654 8999999999999999999999998 654
No 220
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.10 E-value=6.5e-06 Score=62.85 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+.+.|+++. .++|+|+||||++.+.. |||+++|+ |++... ++|++|.+.
T Consensus 176 ~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~---g~~~~l~~~ 226 (275)
T cd03289 176 VIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY---DSIQKLLNE 226 (275)
T ss_pred HHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeEeec---CCHHHHhhC
Confidence 4566777653 37999999999998865 99999998 776655 699988873
No 221
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.10 E-value=7.8e-06 Score=61.45 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec----------CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE----------GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~----------g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++.+ +.|||++|||++++..+|||+++|+ |+++.. ++++++.+
T Consensus 188 ~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~---~~~~~~~~ 248 (264)
T PRK14243 188 LRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF---DRTEKIFN 248 (264)
T ss_pred HHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe---CCHHHHHh
Confidence 467788888854 4899999999999999999999997 444443 57777653
No 222
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.10 E-value=9.6e-06 Score=59.86 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~~L 58 (107)
..+.++|+++++ .++|||++|||++++..+ ||++++|+ |++... ++++.+
T Consensus 182 ~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~---g~~~~~ 233 (248)
T PRK09580 182 KIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS---GDFTLV 233 (248)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe---CCHHHH
Confidence 467778888864 489999999999999988 99999998 776655 465543
No 223
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.09 E-value=8.9e-06 Score=58.70 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|+++.++ |.|+|+||||++++..+||++++|+ |+
T Consensus 173 ~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 173 WEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 4677888888654 8999999999999999999999998 53
No 224
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=9.7e-06 Score=57.48 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..++++|++++++.|.|+|++|||++++..+||++++|+
T Consensus 137 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 175 (178)
T cd03229 137 REVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLR 175 (178)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 467788888876557999999999999999999999998
No 225
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=5.6e-06 Score=59.83 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
..+.++|+++++ +.|+|+||||++++..+|||+++|+ |++..
T Consensus 167 ~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 167 IRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred HHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 357788888864 4899999999999999999999998 65543
No 226
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.09 E-value=9.5e-06 Score=58.51 Aligned_cols=40 Identities=33% Similarity=0.406 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|+++++ .|.|+|++|||++++..+||++++|+ |+
T Consensus 172 ~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 172 GEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 457788888875 48999999999999999999999998 54
No 227
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=8.6e-06 Score=60.55 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++++ ++|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 186 ~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~ 236 (253)
T PRK14261 186 AKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF---DKTTQIF 236 (253)
T ss_pred HHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEc---CCHHHHH
Confidence 456788888854 5899999999999999999999999 776655 4666654
No 228
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=7.8e-06 Score=62.03 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++++ +.|||+||||++++..+|||+++|+ |++... ++++++.+
T Consensus 200 ~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~---g~~~~~~~ 251 (276)
T PRK14271 200 EKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEE---GPTEQLFS 251 (276)
T ss_pred HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 457788888864 4899999999999999999999999 766555 57777654
No 229
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.08 E-value=1e-05 Score=57.56 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|+++.++ +.|+|++|||++++..+||++++|+ |+
T Consensus 141 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 141 AEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 4677888888654 8999999999999999999999998 54
No 230
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.07 E-value=6.3e-06 Score=66.79 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.+++++|+++.++ |.|||+||||++++..+|||+++|+ |+++..+
T Consensus 428 ~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 428 FEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 4678889988764 8999999999999999999999998 8776543
No 231
>PRK13409 putative ATPase RIL; Provisional
Probab=98.07 E-value=1.3e-05 Score=67.05 Aligned_cols=60 Identities=28% Similarity=0.473 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFL 66 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l 66 (107)
..+.++|+++++ |+|+|+||||++++..+||++++|.|+++..|.+..+....+..+.++
T Consensus 249 ~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~~~g~~g~~~~~~~~~~~i~~~~ 308 (590)
T PRK13409 249 LNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYGEPGAYGVVSKPKGVRVGINEYL 308 (590)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecchhHHHHhHHHHH
Confidence 457788888864 899999999999999999999999976666554444544443333343
No 232
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.07 E-value=6e-06 Score=61.22 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.++++++.|..+.|.++++||||+..|.-++||.++|+ |+++.+|
T Consensus 189 RLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 57899999999999999999999999999999999999 8777776
No 233
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.07 E-value=7.5e-06 Score=76.81 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM 62 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~ 62 (107)
..+.++|+++.++ |+|||++|||++++..+|||+++|+ |+.... |++++++.-|
T Consensus 2107 ~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~---Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2107 RMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCL---GTIQHLKSKF 2161 (2272)
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHHHh
Confidence 4678888888665 8999999999999999999999998 877776 6888887654
No 234
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.07 E-value=7.3e-06 Score=66.74 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
..++++|+++++ .|.|||+||||++++..+|||+++|+ |++...
T Consensus 446 ~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 446 AEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 467888998875 49999999999999999999999998 776554
No 235
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=9.3e-06 Score=59.44 Aligned_cols=50 Identities=26% Similarity=0.496 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++. + +.|+|++|||++++.. ||++++|+ |+.... ++++++.+
T Consensus 175 ~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~---~~~~~~~~ 225 (234)
T cd03251 175 RLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVER---GTHEELLA 225 (234)
T ss_pred HHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeee---CCHHHHHH
Confidence 46778888885 3 7899999999999976 99999999 776654 56666654
No 236
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=8.4e-06 Score=61.48 Aligned_cols=52 Identities=31% Similarity=0.422 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.+.|+|++|||++++. +||++++|+ |++... ++++++.+
T Consensus 179 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~~~~ 231 (271)
T PRK13632 179 REIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQ---GKPKEILN 231 (271)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEe---cCHHHHhc
Confidence 46788899887654699999999999985 799999998 766655 45655543
No 237
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.06 E-value=7.2e-06 Score=66.54 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..++++|++++++ |.|||+||||++++..+||++++|+ |++...+
T Consensus 440 ~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 440 YEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 4677888888765 8999999999999999999999998 7766543
No 238
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=60.16 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-------CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-------GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-------g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++++ ++|+|+||||++++..+||++++|+ |++... ++++++.+
T Consensus 185 ~~l~~~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~---~~~~~~~~ 242 (258)
T PRK14241 185 LAIEDLINELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI---DDTEKIFS 242 (258)
T ss_pred HHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec---CCHHHHHh
Confidence 467788888853 5899999999999999999999995 655554 56666543
No 239
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.05 E-value=1e-05 Score=58.73 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|++++++.|+|+|++|||++++.. ||++++|+ |+
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~ 218 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQ 218 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCE
Confidence 467888888876668999999999999865 89999998 54
No 240
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.05 E-value=1e-05 Score=58.36 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHh-hcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATY-LSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~-~~driivl~-g~~~~~ 49 (107)
.++.++|+++++ .+.|+|++|||++.+.. +||++++|+ |+....
T Consensus 141 ~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 141 RLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 567888888865 48999999999999988 799999999 766554
No 241
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=1.1e-05 Score=60.69 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec---------CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE---------GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~---------g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++. + +.|+|++|||++++..+|||+++|+ |++... ++++++.+
T Consensus 186 ~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~---g~~~~~~~ 245 (261)
T PRK14263 186 RRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM---GPTAQIFQ 245 (261)
T ss_pred HHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe---CCHHHHHh
Confidence 46788888884 3 6899999999999999999999994 555544 56666543
No 242
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.04 E-value=1.3e-05 Score=56.61 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
.+++++|+++++ .|+|+|+||||++++ .+||++++|+ |+
T Consensus 133 ~~l~~~l~~~~~-~~~tii~~sh~~~~~-~~~d~v~~l~~G~ 172 (173)
T cd03246 133 RALNQAIAALKA-AGATRIVIAHRPETL-ASADRILVLEDGR 172 (173)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEEECCC
Confidence 467888888865 489999999999988 5899999998 53
No 243
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.04 E-value=1.1e-05 Score=59.33 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|++++ .|.|+|++|||++++. +||++++|+ |++... ++++++.+
T Consensus 176 ~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~---~~~~~~~~ 226 (238)
T cd03249 176 KLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQ---GTHDELMA 226 (238)
T ss_pred HHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEe---CCHHHHhh
Confidence 46778888875 4899999999999997 899999999 776554 45555544
No 244
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.03 E-value=1.1e-05 Score=59.31 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|++++ + |+|+|++|||++++. .||++++|+ |++... ++++++.+
T Consensus 175 ~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~---~~~~~~~~ 225 (237)
T cd03252 175 HAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQ---GSHDELLA 225 (237)
T ss_pred HHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE---cCHHHHHh
Confidence 46778888885 3 899999999999995 699999998 776665 46666654
No 245
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=1.3e-05 Score=59.42 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|++++ + +.|+|++|||++++..+||++++|+ |++... ++++++.
T Consensus 183 ~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~---g~~~~~~ 233 (250)
T PRK14266 183 TKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES---GLTDQIF 233 (250)
T ss_pred HHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe---CCHHHHH
Confidence 46788888884 3 7899999999999999999999998 776665 5666664
No 246
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=1.6e-05 Score=60.15 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec----------CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE----------GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~----------g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++++ +.|||++|||++++..+||++++|+ |+++.. ++++++.
T Consensus 198 ~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~---g~~~~~~ 257 (274)
T PRK14265 198 RQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF---SPTEQMF 257 (274)
T ss_pred HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe---CCHHHHH
Confidence 467788888853 6899999999999999999999995 544443 5666664
No 247
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.00 E-value=1.1e-05 Score=66.73 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceee---cCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTL---ANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~---v~tp~~L~~~ 61 (107)
..+++++++|.+ .|.++|+|||.|+++..+|||+.||. |+.+..+. -.+.+++.+.
T Consensus 182 ~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 182 ERLFDLIRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRL 241 (500)
T ss_pred HHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHH
Confidence 457888999964 59999999999999999999999999 87666542 1334555553
No 248
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.99 E-value=1.1e-05 Score=58.11 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~-g~~~ 47 (107)
..+.++|+++.++ |+|+|++|||++ ++..+||++++|+ |++.
T Consensus 148 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 148 LQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 4677888888654 899999999997 7889999999998 6543
No 249
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.99 E-value=1.6e-05 Score=59.69 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.++|+++++ +.|+|+||||++++..+||++++|+ |+.... ++++++.+
T Consensus 190 ~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~---g~~~~~~~ 241 (257)
T PRK14246 190 QAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEW---GSSNEIFT 241 (257)
T ss_pred HHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 357778887753 5899999999999999999999998 766655 46666543
No 250
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.98 E-value=1.3e-05 Score=65.25 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
..++++|+++++ .|+|+|+||||++++..+||++++|+ |++...
T Consensus 177 ~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 177 EQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 467888888865 48999999999999999999999999 766544
No 251
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.97 E-value=1.7e-05 Score=57.98 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP 46 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~ 46 (107)
..+.++|++++++.|.|||++|||++++. .||++++|+ |++
T Consensus 183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i 224 (228)
T PRK10584 183 DKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQL 224 (228)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE
Confidence 46788898887666899999999999985 599999998 643
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.97 E-value=1.3e-05 Score=58.69 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~-g~~~~ 48 (107)
..+.++|+++.++ +.|+|++||++ +++..+||++++|+ |++..
T Consensus 180 ~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 180 LNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 4677888888654 89999999999 69999999999999 76554
No 253
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.93 E-value=3.7e-05 Score=58.27 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
..+|++-.++.++.+.|.+||||+|+.|..|.+|.|+|+ |+++.
T Consensus 185 ~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 185 EFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 468899999999999999999999999999999999999 88765
No 254
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=2.4e-05 Score=57.49 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.++.++|++++++.|+|+|++|||++++..+ |++++|+ |++...|
T Consensus 182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEe
Confidence 4678888888765689999999999999875 6999998 7665543
No 255
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=2.3e-05 Score=57.42 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++++ |+|+|++|||++++.. ||++++|+ |+.... ++++++.+
T Consensus 174 ~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~---~~~~~~~~ 224 (236)
T cd03253 174 REIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVER---GTHEELLA 224 (236)
T ss_pred HHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEECCEEEee---CCHHHHhh
Confidence 467788887753 8999999999999965 99999999 766654 45555543
No 256
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.90 E-value=2.6e-05 Score=73.28 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFR 74 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~ 74 (107)
..+.++|+++. .|+|||++|||+++|..+|||+++|+ |+.... |+++.|++.|.. ++.+++.
T Consensus 1098 ~~l~~lL~~l~--~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~---Gs~~~Lk~~~g~---gy~l~~~ 1160 (2272)
T TIGR01257 1098 RSIWDLLLKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS---GTPLFLKNCFGT---GFYLTLV 1160 (2272)
T ss_pred HHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---cCHHHHHHhcCC---cEEEEEE
Confidence 46788898884 38999999999999999999999999 877665 689998875522 4445554
No 257
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.89 E-value=4.1e-05 Score=55.12 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
..+.+.|+++++ .|.|||+||||++++ ..||++++|+ |+...
T Consensus 126 ~~l~~~l~~~~~-~g~tvIivSH~~~~~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 126 NQLLEVIKGLID-LGNTVILIEHNLDVL-SSADWIIDFGPGSGKS 168 (176)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEECCCCCCC
Confidence 356777887764 589999999999997 5799999998 54333
No 258
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=2.8e-05 Score=56.71 Aligned_cols=49 Identities=16% Similarity=0.418 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|+++. + +.|+|+||||++++. .||++++|+ |++... ++++++.
T Consensus 176 ~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~---~~~~~~~ 225 (229)
T cd03254 176 KLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDDGKIIEE---GTHDELL 225 (229)
T ss_pred HHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEe---CCHHHHH
Confidence 35778888874 3 899999999999986 599999999 766554 4555544
No 259
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.88 E-value=2e-05 Score=57.15 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
.+++++|+++++ ++|+|++|||++++ .+||++++|+ |++.
T Consensus 177 ~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 177 ERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred HHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence 467788888864 38999999999987 7999999998 6544
No 260
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=2.7e-05 Score=59.93 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEE-EEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRV-IVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~dri-ivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++++ +.|+|+||||++++..+||++ ++|+ |++... ++++++.+
T Consensus 237 ~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~---g~~~~~~~ 289 (305)
T PRK14264 237 SKIEDLIEELAE--EYTVVVVTHNMQQAARISDQTAVFLTGGELVEY---DDTDKIFE 289 (305)
T ss_pred HHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEe---CCHHHHHh
Confidence 467888888865 489999999999999999997 5677 877665 46666543
No 261
>PLN03211 ABC transporter G-25; Provisional
Probab=97.88 E-value=2.5e-05 Score=66.17 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++++ .|+|||++||+++ .+..+||++++|+ |+.... |+++++.+
T Consensus 243 ~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~---G~~~~~~~ 296 (659)
T PLN03211 243 YRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF---GKGSDAMA 296 (659)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE---CCHHHHHH
Confidence 578899999976 4999999999998 5889999999999 877776 57777776
No 262
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.88 E-value=3.3e-05 Score=63.89 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
.||.++|++++++ |++||++|-|++++..+||||+||+ |++..
T Consensus 438 ~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 438 AEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 4899999999876 9999999999999999999999999 87665
No 263
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.85 E-value=3.7e-05 Score=56.02 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+++++|+++.++.+.|+|++|||++. ..+||++++|+
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~ 215 (220)
T TIGR02982 178 RDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHME 215 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEE
Confidence 467888888876668999999999996 57999999998
No 264
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.85 E-value=2.9e-05 Score=58.04 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++. .+.|+|++||+++.+.. |||+++|+ |++... ++++++.+
T Consensus 193 ~~l~~~l~~~~--~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~---g~~~~~~~ 243 (257)
T cd03288 193 NILQKVVMTAF--ADRTVVTIAHRVSTILD-ADLVLVLSRGILVEC---DTPENLLA 243 (257)
T ss_pred HHHHHHHHHhc--CCCEEEEEecChHHHHh-CCEEEEEECCEEEEe---CCHHHHHh
Confidence 45677777763 37999999999999976 99999999 777655 57776654
No 265
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=3.6e-05 Score=58.70 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEE-Eec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVI-VFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~drii-vl~-g~~~~~g~v~tp~~L~ 59 (107)
..+.++|+++++ +.|+|++|||++++..+|||++ +|+ |++... ++++++.
T Consensus 217 ~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~---g~~~~~~ 268 (285)
T PRK14254 217 SKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF---DDTDKIF 268 (285)
T ss_pred HHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe---CCHHHHH
Confidence 467888888864 3799999999999999999975 566 776655 4555553
No 266
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.79 E-value=3.7e-05 Score=62.25 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHh-hcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATY-LSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~-~~driivl~-g~~~~~ 49 (107)
.+++++|++++++.+.|||+||||++++.. +||++++|+ |++...
T Consensus 438 ~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 438 QLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 578889999976534579999999999987 699999998 776553
No 267
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.77 E-value=5.4e-05 Score=56.87 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++-++++.|.+ .|+.|++..|+..+...+|||.+++. |++.++ |+|+++.+
T Consensus 175 V~dIq~iI~~L~~-rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~---G~p~ei~~ 228 (243)
T COG1137 175 VIDIQRIIKHLKD-RGIGVLITDHNVRETLDICDRAYIISDGKVLAE---GSPEEIVN 228 (243)
T ss_pred HHHHHHHHHHHHh-CCceEEEccccHHHHHhhhheEEEEecCeEEec---CCHHHHhc
Confidence 4678889999965 59999999999999999999999999 999998 58888765
No 268
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.76 E-value=4.7e-05 Score=54.92 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
..++++|+++. + |.|+|++|||++++.. ||++++|+ |++...
T Consensus 162 ~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~ 204 (207)
T cd03369 162 ALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVMDAGEVKEY 204 (207)
T ss_pred HHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCEEEec
Confidence 45778888774 3 8999999999999976 99999998 665443
No 269
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=5.6e-05 Score=54.21 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~ 43 (107)
..++++|+++++ .|.|+|++|||++ .+..+||++++|+
T Consensus 145 ~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~ 183 (192)
T cd03232 145 YNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLK 183 (192)
T ss_pred HHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEc
Confidence 467788888865 4899999999999 5789999999997
No 270
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=7.8e-05 Score=62.31 Aligned_cols=50 Identities=24% Similarity=0.388 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+++.|.++++ ++|+++|||++..+. -||+|++|+ |+++.+ |++++|.+
T Consensus 493 ~~i~~~l~~l~~--~ktvl~itHrl~~~~-~~D~I~vld~G~l~~~---g~~~~L~~ 543 (559)
T COG4988 493 QIILQALQELAK--QKTVLVITHRLEDAA-DADRIVVLDNGRLVEQ---GTHEELSE 543 (559)
T ss_pred HHHHHHHHHHHh--CCeEEEEEcChHHHh-cCCEEEEecCCceecc---CCHHHHhh
Confidence 357888888875 599999999999985 599999999 888877 68898866
No 271
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.75 E-value=5.6e-05 Score=55.28 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.++|.+.. .+.|+|++|||++++..+||++++|+ |++...+ +-+.+.+
T Consensus 142 ~~~~~l~~~~--~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~---~~~~~~~ 192 (213)
T PRK15177 142 RMQAALACQL--QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCE---DLAQATA 192 (213)
T ss_pred HHHHHHHHHh--hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeC---CHHHHHH
Confidence 3444443332 24689999999999999999999999 8777664 4444433
No 272
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=2.5e-05 Score=59.08 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..|-++|.+|. .+.|||+|||+|..|++++|+.++|. |+.+-. +..+.++.
T Consensus 186 ~kIEeLi~eLk--~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~---g~T~~iF~ 237 (253)
T COG1117 186 LKIEELITELK--KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF---GPTDKIFT 237 (253)
T ss_pred HHHHHHHHHHH--hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE---cCHHhhhc
Confidence 34667788886 36899999999999999999999999 877765 45566554
No 273
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=0.00011 Score=50.79 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|+++.+. +.|++++||+++++..+||++++|+
T Consensus 117 ~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~ 154 (157)
T cd00267 117 ERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLK 154 (157)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 4677788887655 7899999999999999999999998
No 274
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.73 E-value=9e-05 Score=54.04 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|++++++ +.|+|+||||++++..+||++++++
T Consensus 170 ~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~ 207 (213)
T cd03279 170 EAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIK 207 (213)
T ss_pred HHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEe
Confidence 4567788888654 8899999999999999999999999
No 275
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.70 E-value=6.3e-05 Score=53.22 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..++++|+++. + +.|+|++|||++++. .||++++|+ |+..
T Consensus 135 ~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~g~i~ 175 (178)
T cd03247 135 RQLLSLIFEVL-K-DKTLIWITHHLTGIE-HMDKILFLENGKII 175 (178)
T ss_pred HHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 45678888774 3 799999999999986 699999998 6544
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.69 E-value=0.00011 Score=50.74 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+.++|+++ +.|++++|||++++..+||++++|+
T Consensus 108 ~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~ 141 (144)
T cd03221 108 ALEEALKEY----PGTVILVSHDRYFLDQVATKIIELE 141 (144)
T ss_pred HHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEe
Confidence 344555544 5799999999999999999999998
No 277
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.68 E-value=9e-05 Score=67.34 Aligned_cols=53 Identities=19% Similarity=0.043 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++++.|++++++.|+|+|+++|+. +.+..++|++++|+ |+++.. |+++++.+
T Consensus 246 ~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~---G~~~~~~~ 300 (1394)
T TIGR00956 246 LEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF---GPADKAKQ 300 (1394)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE---CCHHHHHH
Confidence 5788999999877799999999996 78999999999999 887776 57777665
No 278
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.68 E-value=7e-05 Score=55.76 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
.++|+++.++++. |+||+++|||.+.+..+..|++.++ |+...
T Consensus 174 ~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 174 WEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred HHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 5899999999864 9999999999999999999999999 87654
No 279
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.67 E-value=0.0001 Score=56.23 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
..++++|+++.+ .|.|+|+||||++++. .||+++.|
T Consensus 209 ~~l~~~L~~l~~-~g~tvIiitH~~~~i~-~aD~ii~L 244 (261)
T cd03271 209 KKLLEVLQRLVD-KGNTVVVIEHNLDVIK-CADWIIDL 244 (261)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEe
Confidence 467788888865 4899999999999985 79999999
No 280
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00011 Score=51.78 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.++.++|+++. + ++|+|++|||++++.. ||++++|+
T Consensus 133 ~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~ 168 (171)
T cd03228 133 ALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLD 168 (171)
T ss_pred HHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEc
Confidence 46778888874 3 6999999999999987 99999998
No 281
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.67 E-value=9e-05 Score=53.92 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|+++.+ .|.|+|++|||++++..+||++++++
T Consensus 174 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 174 TLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEe
Confidence 356778888765 48999999999999999999999987
No 282
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.67 E-value=0.0001 Score=54.07 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|++++++.|.|+|++|||++++. +||++++|+
T Consensus 174 ~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 174 HNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 46778888887766899999999999995 699999996
No 283
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.67 E-value=8.4e-05 Score=62.26 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+++.|++++++ |+|+|+++|++. .+..+||++++|+ |+.+.. |+++++.+
T Consensus 203 ~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~---G~~~~~~~ 256 (617)
T TIGR00955 203 YSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYL---GSPDQAVP 256 (617)
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE---CCHHHHHH
Confidence 4788999999764 999999999995 7899999999999 877776 57777765
No 284
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.66 E-value=9.4e-05 Score=53.86 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|++++++ |+|+|+||||++++..+||+++.+.
T Consensus 186 ~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 186 QVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEecC
Confidence 4677888888654 8999999999999999999998864
No 285
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.64 E-value=9.3e-05 Score=56.43 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|.++++..|.||++++||+.....|||++-||. |+-+.. +..+++.+
T Consensus 195 ~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES---a~~e~l~~ 248 (330)
T COG4170 195 AQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES---APSEELVT 248 (330)
T ss_pred HHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc---cchhHHhc
Confidence 578999999999889999999999999999999999999 876654 34455544
No 286
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=0.00011 Score=60.22 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc-ceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS-ISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~-~~g~v~tp~~L~~ 60 (107)
.+.++|+++ +.|||+||||++++..+|||+++|+ |++. .. ++++++.+
T Consensus 476 ~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~---g~~~~~~~ 525 (530)
T PRK15064 476 SLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFS---GTYEEYLR 525 (530)
T ss_pred HHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcC---CCHHHHHH
Confidence 445555544 4599999999999999999999998 7665 44 46555543
No 287
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.62 E-value=0.00012 Score=53.27 Aligned_cols=38 Identities=18% Similarity=0.381 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~ 45 (107)
..+.++|+++++ +.|+|++|||++++. .||++++|+ |+
T Consensus 187 ~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~ 225 (226)
T cd03248 187 QQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDGGR 225 (226)
T ss_pred HHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecCCc
Confidence 356788888753 589999999999996 599999998 53
No 288
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.62 E-value=9.3e-05 Score=54.69 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..|.+++-.++++.|+|.|+||||..+|.+ |+|.+-|. |++.
T Consensus 183 ~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 183 DKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 357889999999999999999999999976 89999887 7654
No 289
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.62 E-value=5e-05 Score=56.96 Aligned_cols=43 Identities=30% Similarity=0.375 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..-++|++++. +.+|++|.|||.++..+|++|-||+ |.+.+.|
T Consensus 185 ~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 185 KTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred HHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 45678888874 4799999999999999999999999 9888885
No 290
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.61 E-value=0.00011 Score=64.50 Aligned_cols=50 Identities=30% Similarity=0.333 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++.++ |.|||+|+||++++. +||++++| + |+++.. ++++++.
T Consensus 526 ~~L~~~L~~L~~~-G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~---g~~~el~ 582 (924)
T TIGR00630 526 ERLINTLKRLRDL-GNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVAS---GTPEEIL 582 (924)
T ss_pred HHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeec---cCHHHHh
Confidence 4678889998654 999999999999985 89999999 4 555544 5777764
No 291
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.00016 Score=59.31 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=32.3
Q ss_pred hcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc-ceeecCCchhHH
Q psy1687 17 HAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS-ISTLANAPQNLL 59 (107)
Q Consensus 17 ~~~~tvi~vTHDl~~a~~~~driivl~-g~~~-~~g~v~tp~~L~ 59 (107)
+.|+|||+||||++++..+||++++|+ |++. .. +++++..
T Consensus 200 ~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~---g~~~~~~ 241 (530)
T PRK15064 200 ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYP---GNYDEYM 241 (530)
T ss_pred hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEec---CCHHHHH
Confidence 458999999999999999999999999 7663 34 4555543
No 292
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.59 E-value=0.00013 Score=64.32 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++|.+ .|.|||+|+||++++. .||++++| + |+++.. ++++++..
T Consensus 528 ~~L~~~L~~L~~-~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~---g~~~e~~~ 585 (943)
T PRK00349 528 DRLIETLKHLRD-LGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVAS---GTPEEIMK 585 (943)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeec---cCHHHHhc
Confidence 467888998864 5999999999999985 69999999 5 555554 57777643
No 293
>PLN03140 ABC transporter G family member; Provisional
Probab=97.58 E-value=0.00015 Score=66.41 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITF 73 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~ 73 (107)
.++++.|++++++.|+|+|+++|+. +++..++|++++|+ |+++.. |+++++.+ +++.++..-
T Consensus 373 ~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~---G~~~~~~~----yF~~lGf~c 436 (1470)
T PLN03140 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ---GPRDHILE----FFESCGFKC 436 (1470)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEe---CCHHHHHH----HHHHcCCCC
Confidence 5788999999876799999999996 68899999999999 888777 57777765 455555433
No 294
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.55 E-value=0.00016 Score=52.40 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
..+.++|+++.+ +.|+|++|||++++.. ||++++|+ |+....
T Consensus 176 ~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~ 218 (221)
T cd03244 176 ALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEECCeEEec
Confidence 467788887743 6899999999999975 99999998 765544
No 295
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00027 Score=51.09 Aligned_cols=43 Identities=26% Similarity=0.182 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcCcEEEE-EeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFV-VEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~-vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..++++|++++++.+.|+|+ ++|+.+++..+||++++|+ |++.
T Consensus 155 ~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 155 LEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 46788888887654666555 5677899999999999999 6544
No 296
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.46 E-value=0.00031 Score=53.80 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=35.3
Q ss_pred HHHHH-HHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 7 TLQVI-KRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 7 i~~ll-~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
+++.+ +++. .+.|+|++|||++++ .+||++++|+ |++... ++++++.+
T Consensus 198 l~~~ll~~~~--~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~---g~~~~~~~ 247 (282)
T cd03291 198 IFESCVCKLM--ANKTRILVTSKMEHL-KKADKILILHEGSSYFY---GTFSELQS 247 (282)
T ss_pred HHHHHHHHhh--CCCEEEEEeCChHHH-HhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 44433 3443 378999999999998 5899999999 776655 56666654
No 297
>KOG0059|consensus
Probab=97.45 E-value=0.00016 Score=63.20 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM 62 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~ 62 (107)
.+-+++.++.+. |+.+|+.||.|++|..+|||+.+|. |+..+. |+|++|++-|
T Consensus 736 ~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci---Gs~q~LKsrf 789 (885)
T KOG0059|consen 736 HLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVIGQLRCI---GSPQELKSRY 789 (885)
T ss_pred HHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeecCeeEEe---cChHHHHhhc
Confidence 466788888654 6699999999999999999999998 988887 6999998644
No 298
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.41 E-value=0.00033 Score=50.36 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=28.5
Q ss_pred HHHH-HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQ-VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~-ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+++ +++++.++ |.|+|++||+++.+.. ||++++|+
T Consensus 165 ~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~ 201 (204)
T cd03250 165 HIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLD 201 (204)
T ss_pred HHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEe
Confidence 3455 34445443 8999999999999988 99999998
No 299
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00032 Score=59.13 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc-ceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS-ISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~-~~g~v~tp~~L 58 (107)
..+.++|+++ +.|||+||||++++..+||++++|+ |++. .. |++++.
T Consensus 467 ~~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~---g~~~~~ 515 (638)
T PRK10636 467 QALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFD---GDLEDY 515 (638)
T ss_pred HHHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcC---CCHHHH
Confidence 4556666655 3499999999999999999999998 7654 34 455554
No 300
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.41 E-value=0.00031 Score=57.83 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+++.|+++. .++|+|+|||+++.+ ..||+|++|+ |++... |++++|.+
T Consensus 517 ~~i~~~l~~~~--~~~tvI~VtHr~~~~-~~~D~Ii~l~~g~i~e~---g~~~~l~~ 567 (582)
T PRK11176 517 RAIQAALDELQ--KNRTSLVIAHRLSTI-EKADEILVVEDGEIVER---GTHAELLA 567 (582)
T ss_pred HHHHHHHHHHh--CCCEEEEEecchHHH-HhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 35667777664 379999999999876 5699999999 766655 68888775
No 301
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.40 E-value=0.00032 Score=65.25 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-------CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-------GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-------g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++ |.|||+||||++++ .+||++++|. |+++.. |+|+++..
T Consensus 849 ~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~---Gtpeel~~ 906 (1809)
T PRK00635 849 KALIYVLQSLTHQ-GHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLAS---CSPEELIH 906 (1809)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEe---CCHHHHHh
Confidence 5678888888754 99999999999999 8999999994 334444 68888765
No 302
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00022 Score=59.58 Aligned_cols=49 Identities=24% Similarity=0.254 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
+++++|..-+ .|||+|+|||++..+ ..||||+||+ |+.+.+ |++.+|..
T Consensus 512 ~vL~ll~~~~--~~kTll~vTHrL~~l-e~~drIivl~~Gkiie~---G~~~~Ll~ 561 (573)
T COG4987 512 QVLALLFEHA--EGKTLLMVTHRLRGL-ERMDRIIVLDNGKIIEE---GTHAELLA 561 (573)
T ss_pred HHHHHHHHHh--cCCeEEEEecccccH-hhcCEEEEEECCeeeec---CCHHhhhc
Confidence 4566664433 589999999999998 6699999999 877777 58888776
No 303
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.38 E-value=0.00039 Score=57.48 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.+.|+++. .++|+|+|||+++... .||+|++|+ |+.... |++++|.+
T Consensus 513 ~~i~~~l~~~~--~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~---G~~~~L~~ 563 (592)
T PRK10790 513 QAIQQALAAVR--EHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQ---GTHQQLLA 563 (592)
T ss_pred HHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEEE---cCHHHHHh
Confidence 35667777764 3689999999998865 599999999 776655 68888875
No 304
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.35 E-value=0.0004 Score=61.25 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++.+ .|.|||+||||++++. .||+++.| + |+++.. |+|+++.+
T Consensus 870 ~~L~~~L~~l~~-~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~---Gt~~el~~ 927 (943)
T PRK00349 870 RKLLEVLHRLVD-KGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVAT---GTPEEVAK 927 (943)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEe---CCHHHHHh
Confidence 467788888864 4899999999999984 79999999 3 555554 68888765
No 305
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.35 E-value=0.00042 Score=58.47 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++.|+++. .++|+|+|||+++.+ ..||+|++|+ |++... |++++|.+
T Consensus 639 ~i~~~l~~~~--~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~---G~~~eLl~ 688 (694)
T TIGR03375 639 RFKDRLKRWL--AGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVAD---GPKDQVLE 688 (694)
T ss_pred HHHHHHHHHh--CCCEEEEEecCHHHH-HhCCEEEEEeCCEEEee---CCHHHHHH
Confidence 4666777664 379999999999986 6899999999 776655 68888765
No 306
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.34 E-value=0.00047 Score=49.39 Aligned_cols=36 Identities=31% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
..+.++|+++.++ |.|+|++|||++.+ .+||++++|
T Consensus 171 ~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 171 DEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEeC
Confidence 4677888888654 89999999999976 589999875
No 307
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.32 E-value=0.00061 Score=56.34 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
+.++|+++ +.|||+||||++++..+||++++|+ |++.
T Consensus 202 l~~~L~~~----~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 202 LEQFLHDY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred HHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 34444443 4599999999999999999999999 7654
No 308
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.32 E-value=0.00049 Score=56.51 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++.|+++.. .++|+|++||+++.+ ..||++++|+ |+.... |+++++.+
T Consensus 492 ~i~~~l~~~~~-~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~---g~~~~l~~ 542 (544)
T TIGR01842 492 ALANAIKALKA-RGITVVVITHRPSLL-GCVDKILVLQDGRIARF---GERDEVLA 542 (544)
T ss_pred HHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEee---CCHHHHhh
Confidence 56677777643 479999999999975 6799999999 776655 57776643
No 309
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.32 E-value=0.00076 Score=56.08 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH---HHhhhhhcCe
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG---MNKFLSLLGI 71 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~---~~~~l~~~~i 71 (107)
.+.+.|+++. .++|+|+|||+++.+ ..||++++|+ |++... |+.+++.+. |..+.+....
T Consensus 509 ~i~~~l~~~~--~~~tvI~isH~~~~~-~~~d~i~~l~~G~i~~~---g~~~~l~~~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 509 RVKNAIDALR--KNRTTFIIAHRLSTV-RNADLVLFLDQGRLIEK---GSFQELIQKDGRFYKLLRRSGL 572 (585)
T ss_pred HHHHHHHHHh--CCCEEEEEEcChHHH-HcCCEEEEEECCEEEEE---CCHHHHHHCCChHHHHHHhCcc
Confidence 4566776663 379999999999998 5599999999 766655 688888753 4444444433
No 310
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.31 E-value=0.00043 Score=58.45 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=32.9
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++|+|+|||+++.+.. ||||++|+ |+++.. |++++|.+
T Consensus 661 ~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~---G~~~~Ll~ 700 (710)
T TIGR03796 661 RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQR---GTHEELWA 700 (710)
T ss_pred cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEe---cCHHHHHH
Confidence 48999999999998755 99999999 777665 68888875
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.31 E-value=0.00065 Score=47.75 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g 44 (107)
.+.++|+++ +.|+|++|||++.+ .+||++++|++
T Consensus 129 ~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~ 162 (166)
T cd03223 129 RLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDG 162 (166)
T ss_pred HHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcC
Confidence 344455443 68999999999876 69999999984
No 312
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00037 Score=51.29 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.+.++|++|+. .|+|-++|||.++.|...+.+++.|. |+++..|
T Consensus 179 qvv~iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 179 QIVSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeec
Confidence 57789999965 69999999999999999999999999 8888776
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.29 E-value=0.00066 Score=56.03 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
.+.++|+++ +.|||+||||++++..+||++++|+ |++.
T Consensus 199 ~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 199 WLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred HHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 344454443 4699999999999999999999999 7654
No 314
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.28 E-value=0.0006 Score=56.29 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|+++. .++|+|+|||+++.+ ..||+|++|+ |++... |+.++|.+
T Consensus 523 ~i~~~l~~~~--~~~TvIiItHrl~~i-~~aD~Iivl~~G~i~e~---G~~~eL~~ 572 (588)
T PRK11174 523 LVMQALNAAS--RRQTTLMVTHQLEDL-AQWDQIWVMQDGQIVQQ---GDYAELSQ 572 (588)
T ss_pred HHHHHHHHHh--CCCEEEEEecChHHH-HhCCEEEEEeCCeEeec---CCHHHHHh
Confidence 4566666664 479999999999876 5699999999 777665 68888875
No 315
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.27 E-value=0.00055 Score=57.80 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+++.|+++. .++|+|+|||+++.+. .||++++|+ |++... |++++|.+
T Consensus 630 ~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~---g~~~~l~~ 680 (694)
T TIGR01846 630 ALIMRNMREIC--RGRTVIIIAHRLSTVR-ACDRIIVLEKGQIAES---GRHEELLA 680 (694)
T ss_pred HHHHHHHHHHh--CCCEEEEEeCChHHHH-hCCEEEEEeCCEEEEe---CCHHHHHH
Confidence 35667777763 4799999999999885 599999999 777665 68888765
No 316
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.00057 Score=60.22 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNL 58 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L 58 (107)
..++++|+++.+ .|.|+|++|||++++ ..||++++| + |+++.. |+|+++
T Consensus 868 ~~L~~~L~~l~~-~G~TVIvi~H~~~~i-~~aD~ii~Lgp~~G~~gG~iv~~---G~~~~l 923 (924)
T TIGR00630 868 KKLLEVLQRLVD-QGNTVVVIEHNLDVI-KTADYIIDLGPEGGDGGGTIVAS---GTPEEV 923 (924)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEecCCccCCCCEEEEe---CCHHHh
Confidence 467788888865 489999999999998 579999999 3 545444 566654
No 317
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.25 E-value=0.00052 Score=57.83 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++.|+++ ++|+|+|||+++.+. .||+|++|+ |++... |++++|.+
T Consensus 626 ~i~~~L~~~----~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~---G~~~~Ll~ 673 (686)
T TIGR03797 626 IVSESLERL----KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQ---GTYDELMA 673 (686)
T ss_pred HHHHHHHHh----CCeEEEEecChHHHH-cCCEEEEEECCEEEEE---CCHHHHHh
Confidence 344444443 689999999998875 599999999 777665 68888765
No 318
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.23 E-value=0.00072 Score=55.98 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++.|+++. .++|+|+|||+++.+ ..||++++|+ |++... |+++++.+
T Consensus 509 ~i~~~l~~~~--~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~---g~~~~l~~ 558 (588)
T PRK13657 509 KVKAALDELM--KGRTTFIIAHRLSTV-RNADRILVFDNGRVVES---GSFDELVA 558 (588)
T ss_pred HHHHHHHHHh--cCCEEEEEEecHHHH-HhCCEEEEEECCEEEEe---CCHHHHHH
Confidence 4566666653 379999999999886 6799999998 766654 68888865
No 319
>KOG0063|consensus
Probab=97.21 E-value=0.0008 Score=55.55 Aligned_cols=90 Identities=29% Similarity=0.405 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcC----eeeeeCCCCCccee
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLG----ITFRRDPNNFRPRI 84 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~----i~~~~~~~~~~~~i 84 (107)
..|+.+.. .+.-+|+|.||+.....++|-+.++.|.+++.|-+.-|-.+.++.|.|+.++. .+|+.... ...+
T Consensus 254 ~~IRsl~~-p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniFl~g~ipten~rfR~~~l--~f~~ 330 (592)
T KOG0063|consen 254 ITIRSLIN-PDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGLIPTENLRFRPECL--VFLA 330 (592)
T ss_pred HHHHHhhC-CCCeEEEEEeechHHHhhhcceeEEecCCccceEEEeccchhhhhhhhhhccCCcccccccchhh--eeee
Confidence 45666654 37899999999999999999999999999999988889999999888988875 55544332 2222
Q ss_pred eeCCChhhHHHHHhCceeecc
Q psy1687 85 NKNNSVKDCEQKRAGQYFFYE 105 (107)
Q Consensus 85 ~~~~~~~~~~~k~~~~~~~~~ 105 (107)
....+. + |++++|-|-.
T Consensus 331 ~~~~~~---e-k~~~~y~Yp~ 347 (592)
T KOG0063|consen 331 SDLSSE---D-RRTGRYSYPK 347 (592)
T ss_pred ccccch---h-hhhheeccCc
Confidence 222222 4 8999997643
No 320
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.20 E-value=0.00076 Score=55.60 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+.+.++++. .++|+++|+|.++.+.. ||+|+||+ |++... |++++|...
T Consensus 503 ~I~~~l~~l~--~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~---G~h~eLl~~ 553 (567)
T COG1132 503 LIQDALKKLL--KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVER---GTHEELLAK 553 (567)
T ss_pred HHHHHHHHHh--cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEe---cCHHHHHHc
Confidence 4566666664 36799999999988877 99999999 876655 799999873
No 321
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.18 E-value=0.00091 Score=55.46 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|+++. .++|+|+|||+++.+. .||++++|+ |++... |+.++|.+
T Consensus 513 ~i~~~l~~~~--~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~ 562 (574)
T PRK11160 513 QILELLAEHA--QNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQ---GTHQELLA 562 (574)
T ss_pred HHHHHHHHHc--CCCEEEEEecChhHHH-hCCEEEEEeCCeEEEe---CCHHHHHh
Confidence 4566666664 3799999999999875 599999999 777665 68888765
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.18 E-value=0.0014 Score=54.19 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..++++|+++ +.|||+||||++++..+||++++|+
T Consensus 480 ~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~ 514 (552)
T TIGR03719 480 RALEEALLEF----AGCAVVISHDRWFLDRIATHILAFE 514 (552)
T ss_pred HHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 3556666655 2489999999999999999999998
No 323
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.18 E-value=0.00075 Score=56.98 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.++.++|+++++ .|.|+|++||+++.+. .||++++|+ |+....|
T Consensus 181 ~~l~~ll~~l~~-~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 181 EEVMAILHQLRD-RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNP 225 (648)
T ss_pred HHHHHHHHHHHh-cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeec
Confidence 567888888865 4899999999999885 699999999 8777665
No 324
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.17 E-value=0.00079 Score=56.95 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++.|+++ .++|+|+|||+++.+ ..||+|++|+ |++... |+.++|.+
T Consensus 649 ~i~~~L~~~---~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~---G~~~~L~~ 697 (708)
T TIGR01193 649 KIVNNLLNL---QDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQ---GSHDELLD 697 (708)
T ss_pred HHHHHHHHh---cCCEEEEEecchHHH-HcCCEEEEEECCEEEEE---CCHHHHHh
Confidence 455666653 478999999999976 6799999999 776655 68888765
No 325
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.17 E-value=0.00079 Score=55.70 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++.|+++. .++|+|+|||+++.+ ..||++++|+ |++... |+.+++.+
T Consensus 489 ~i~~~l~~~~--~~~tii~itH~~~~~-~~~d~i~~l~~G~i~~~---g~~~~l~~ 538 (569)
T PRK10789 489 QILHNLRQWG--EGRTVIISAHRLSAL-TEASEILVMQHGHIAQR---GNHDQLAQ 538 (569)
T ss_pred HHHHHHHHHh--CCCEEEEEecchhHH-HcCCEEEEEeCCEEEEe---cCHHHHHH
Confidence 4666777664 489999999999887 5699999998 776665 67777765
No 326
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.16 E-value=0.00083 Score=55.07 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++.|+++. .++|+|+|||+.+.. ..||+|++|+ |+.... |+.+++.+
T Consensus 507 ~i~~~L~~~~--~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~---g~~~~l~~ 556 (571)
T TIGR02203 507 LVQAALERLM--QGRTTLVIAHRLSTI-EKADRIVVMDDGRIVER---GTHNELLA 556 (571)
T ss_pred HHHHHHHHHh--CCCEEEEEehhhHHH-HhCCEEEEEeCCEEEee---CCHHHHHH
Confidence 4667777664 379999999999886 6699999999 665544 68777754
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.0012 Score=55.73 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 11 IKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 11 l~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
|.++..+.+.|||+||||++++..+||++++|+ |++.
T Consensus 188 L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 188 LEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 333333446799999999999999999999999 7654
No 328
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.15 E-value=0.00081 Score=62.63 Aligned_cols=37 Identities=35% Similarity=0.420 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..++++|++++++ |.|||+||||++ ...+||++++|.
T Consensus 515 ~~L~~lL~~L~~~-G~TVIvVeHd~~-vi~~aDrVi~L~ 551 (1809)
T PRK00635 515 HKLINVIKKLRDQ-GNTVLLVEHDEQ-MISLADRIIDIG 551 (1809)
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCcHH-HHHhCCEEEEEc
Confidence 4678889998764 999999999999 569999999995
No 329
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.14 E-value=0.0012 Score=47.84 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=28.2
Q ss_pred HHHH--HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQ--VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~--ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
++++ +++.+ ++.|.|+|++|||++.+. .||++++|+
T Consensus 178 ~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~ 215 (218)
T cd03290 178 HLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMK 215 (218)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEec
Confidence 4555 45544 345899999999999985 699999998
No 330
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.12 E-value=0.0011 Score=49.45 Aligned_cols=37 Identities=8% Similarity=-0.140 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|++++++ |.|+|+||||.++. .+||++++|.
T Consensus 196 ~~l~~~i~~~~~~-g~~vi~isH~~~~~-~~~d~i~~~~ 232 (247)
T cd03275 196 GKVASYIREQAGP-NFQFIVISLKEEFF-SKADALVGVY 232 (247)
T ss_pred HHHHHHHHHhccC-CcEEEEEECCHHHH-hhCCeEEEEE
Confidence 3567788888654 89999999997765 7899999998
No 331
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.11 E-value=0.00082 Score=61.27 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHH-HhhcCEEEEec-C-CCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMA-TYLSDRVIVFE-G-SPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a-~~~~driivl~-g-~~~~~g 50 (107)
..++++|+++++ .|+|||+++||++.. ...||++++|+ | +.+..|
T Consensus 939 ~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 939 WSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred HHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 578899999975 489999999999974 57899999998 6 776665
No 332
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.11 E-value=0.00096 Score=56.75 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=33.2
Q ss_pred hcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 17 HAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 17 ~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++|+|+|||+++.+ ..||+|++|+ |++... |++++|.+
T Consensus 662 ~~~~TvIiItHrl~~i-~~aD~IivL~~G~ive~---Gt~~eL~~ 702 (711)
T TIGR00958 662 RASRTVLLIAHRLSTV-ERADQILVLKKGSVVEM---GTHKQLME 702 (711)
T ss_pred cCCCeEEEEeccHHHH-HhCCEEEEEECCEEEEe---eCHHHHHh
Confidence 3579999999999986 5699999999 776655 68888875
No 333
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.10 E-value=0.0014 Score=55.17 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=26.4
Q ss_pred CcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 19 KKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 19 ~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
+.|||+||||++++..+||++++|+ |++.
T Consensus 203 ~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 203 QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 4699999999999999999999998 7664
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=97.10 E-value=0.00086 Score=61.43 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|++.. .++|+|+|+|.++.+.. ||||++|+ |+++.. |+|++|.+
T Consensus 1409 ~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~---Gt~~eLl~ 1458 (1495)
T PLN03232 1409 LIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY---DSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE---CCHHHHHh
Confidence 3455565553 47999999999999866 99999999 776655 79999975
No 335
>PLN03130 ABC transporter C family member; Provisional
Probab=97.08 E-value=0.00098 Score=61.58 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|++.. .++|+|+|+|.++.+.. ||||+||+ |+++.. |+|++|.+
T Consensus 1412 ~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~---Gt~~eLl~ 1461 (1622)
T PLN03130 1412 LIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF---DTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEe---CCHHHHHh
Confidence 4556666653 47999999999999866 99999999 776655 79999976
No 336
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.08 E-value=0.0011 Score=54.43 Aligned_cols=50 Identities=18% Similarity=0.424 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+++.|+++. .++|+|+|||+++.. ..||++++|+ |++... |+++++.+
T Consensus 513 ~~i~~~l~~~~--~~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~---g~~~~l~~ 563 (576)
T TIGR02204 513 QLVQQALETLM--KGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQ---GTHAELIA 563 (576)
T ss_pred HHHHHHHHHHh--CCCEEEEEecchHHH-HhCCEEEEEECCEEEee---ecHHHHHH
Confidence 34667777764 379999999999886 5699999998 776655 57777755
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=97.07 E-value=0.0015 Score=56.01 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=27.3
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
.+.|+|+||||++++..+||++++|+ |++.
T Consensus 390 ~~~tviivsHd~~~l~~~~d~i~~l~~g~i~ 420 (718)
T PLN03073 390 WPKTFIVVSHAREFLNTVVTDILHLHGQKLV 420 (718)
T ss_pred cCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 47899999999999999999999999 7664
No 338
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.06 E-value=0.0011 Score=56.97 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+++-|.++. .|+|+|+|||.+... +.||||+||+ |+++.+ |+.++|.+.
T Consensus 647 ~I~~~L~~~~--~~~T~I~IaHRl~ti-~~adrIiVl~~Gkiv~~---gs~~ell~~ 697 (709)
T COG2274 647 IILQNLLQIL--QGRTVIIIAHRLSTI-RSADRIIVLDQGKIVEQ---GSHEELLAQ 697 (709)
T ss_pred HHHHHHHHHh--cCCeEEEEEccchHh-hhccEEEEccCCceecc---CCHHHHHHh
Confidence 4566666664 479999999999997 7799999999 888877 688888774
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=97.05 E-value=0.0017 Score=55.82 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=25.9
Q ss_pred CcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 19 KKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 19 ~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
+.|+|+||||++++..+||++++|+ |++.
T Consensus 674 ~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 674 QGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 3499999999999999999999998 7654
No 340
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.02 E-value=0.0017 Score=48.67 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++...|.++.|++.|.|+.++-....++|.|+||+ |+.+.. |++.+++.
T Consensus 186 sQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~---G~t~~v~a 239 (267)
T COG4167 186 SQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER---GSTADVLA 239 (267)
T ss_pred HHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec---CChhhhhc
Confidence 467889999999999999999999999999999999999 887776 56666655
No 341
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.99 E-value=0.0014 Score=47.50 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..++++|+++++ +.|||+||||++++ .+||+++.+.
T Consensus 154 ~~l~~~l~~~~~--~~tiIiitH~~~~~-~~~d~v~~~~ 189 (197)
T cd03278 154 ERFARLLKEFSK--ETQFIVITHRKGTM-EAADRLYGVT 189 (197)
T ss_pred HHHHHHHHHhcc--CCEEEEEECCHHHH-hhcceEEEEE
Confidence 456777777753 68999999999986 6899999997
No 342
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.98 E-value=0.0013 Score=60.37 Aligned_cols=49 Identities=29% Similarity=0.348 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|++.. .++|+|+|+|+++.+.. ||||++|+ |+++.. |+|++|.+
T Consensus 1459 ~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~---G~~~eLl~ 1508 (1522)
T TIGR00957 1459 LIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF---GAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE---CCHHHHHh
Confidence 3555666543 47999999999998755 89999999 776655 79999986
No 343
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.0017 Score=46.73 Aligned_cols=37 Identities=5% Similarity=-0.072 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
..++++|+++++ .+.|+|++|||++++..+.+|++.+
T Consensus 166 ~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 166 ARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence 467788888864 4889999999999999999999877
No 344
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.94 E-value=0.0021 Score=46.84 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+.++|++++++.+.|+|++|||++.+ ..||+++.|.
T Consensus 160 ~l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~ 196 (204)
T cd03240 160 SLAEIIEERKSQKNFQLIVITHDEELV-DAADHIYRVE 196 (204)
T ss_pred HHHHHHHHHHhccCCEEEEEEecHHHH-hhCCEEEEEe
Confidence 577888888665588999999999987 5799999997
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.93 E-value=0.0016 Score=59.73 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|++.. .++|||+|+|.++.+.. ||||++|+ |+++.. |+|++|.+
T Consensus 1391 ~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~---g~p~~Ll~ 1440 (1490)
T TIGR01271 1391 IIRKTLKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY---DSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe---CCHHHHHc
Confidence 4566666553 47999999999998765 99999999 766544 79999985
No 346
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.93 E-value=0.0023 Score=52.96 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|+++ +.|+|+||||++++..+||++++|+
T Consensus 482 ~~l~~~l~~~----~~tvi~vtHd~~~~~~~~d~i~~l~ 516 (556)
T PRK11819 482 RALEEALLEF----PGCAVVISHDRWFLDRIATHILAFE 516 (556)
T ss_pred HHHHHHHHhC----CCeEEEEECCHHHHHHhCCEEEEEE
Confidence 3455666655 2489999999999999999999997
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.91 E-value=0.0027 Score=58.30 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-C
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-G 44 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g 44 (107)
..+.+.|+++.++.|+|+|+|||+++.+ ..||+|++|+ |
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 4577888888654589999999999987 6899999998 5
No 348
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.81 E-value=0.0014 Score=47.63 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhh--cCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687 6 LTLQVIKRFILH--AKKTGFVVEHDFIMATYLSDRVIVFE-GSP 46 (107)
Q Consensus 6 ~i~~ll~~l~~~--~~~tvi~vTHDl~~a~~~~driivl~-g~~ 46 (107)
.+.++|++++.+ .+.|++++||+++.+..+ |+|.+|. ++|
T Consensus 151 ~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~~ 193 (198)
T cd03276 151 ISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKDP 193 (198)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecCC
Confidence 567778877544 246999999999999887 9999998 654
No 349
>PTZ00243 ABC transporter; Provisional
Probab=96.79 E-value=0.0022 Score=59.11 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|++.. .++|+|+|+|.++.+ .-||+|++|+ |+++.. |+|++|.+
T Consensus 1484 ~Iq~~L~~~~--~~~TvI~IAHRl~ti-~~~DrIlVLd~G~VvE~---Gt~~eLl~ 1533 (1560)
T PTZ00243 1484 QIQATVMSAF--SAYTVITIAHRLHTV-AQYDKIIVMDHGAVAEM---GSPRELVM 1533 (1560)
T ss_pred HHHHHHHHHC--CCCEEEEEeccHHHH-HhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 3455555542 479999999999877 5599999999 766655 79999975
No 350
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.66 E-value=0.0034 Score=45.17 Aligned_cols=37 Identities=5% Similarity=-0.058 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
..++++|+++.++ |.|+|++|||......+|++++.+
T Consensus 162 ~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 162 ARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence 4678888887654 899999999999999999999887
No 351
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.64 E-value=0.0036 Score=51.82 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
+.+.|.+..+ .|++|++++-||+++..+||||.||. |++...
T Consensus 442 I~~~l~e~r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 442 IHERLLELRD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred HHHHHHHHHh-cCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 4556666654 59999999999999999999999999 876654
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.62 E-value=0.0051 Score=51.80 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.5
Q ss_pred hhcCcEEEEEeCCHHHHHhhcCEEEEec--CCCc
Q psy1687 16 LHAKKTGFVVEHDFIMATYLSDRVIVFE--GSPS 47 (107)
Q Consensus 16 ~~~~~tvi~vTHDl~~a~~~~driivl~--g~~~ 47 (107)
++.+.|||+||||++++..+||++++|+ |++.
T Consensus 484 ~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~ 517 (635)
T PRK11147 484 DSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIG 517 (635)
T ss_pred HhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence 3335699999999999999999999996 5443
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=96.58 E-value=0.003 Score=58.07 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec--CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE--GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~--g~~~~~g 50 (107)
.+++++|++++++ |+|||+++|+++ .+..+||++++|+ |+.+..|
T Consensus 1056 ~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1056 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 5789999999765 999999999998 5778999999997 4666665
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.56 E-value=0.0042 Score=57.07 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=32.0
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.|+|+|+|||+++.+.. ||++++|+ |++... |+++++..
T Consensus 597 ~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~---g~~~~l~~ 636 (1490)
T TIGR01271 597 SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFY---GTFSELQA 636 (1490)
T ss_pred cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEE---cCHHHHHh
Confidence 38999999999999864 99999999 766655 57777764
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.55 E-value=0.0043 Score=57.08 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=32.4
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++|+|+|||+++.+.. ||+|++|+ |++... |+++++.+
T Consensus 811 ~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~---g~~~~l~~ 850 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQ-VDVIIVMSGGKISEM---GSYQELLQ 850 (1522)
T ss_pred cCCEEEEEeCChhhhhh-CCEEEEecCCeEEee---CCHHHHHh
Confidence 47899999999999866 99999999 776655 57777764
No 356
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.55 E-value=0.0062 Score=53.97 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG 44 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g 44 (107)
+..++++|+++.. .|.+|++|||++++...+||+|.|++.
T Consensus 996 ~~~~~~~l~~l~~-~g~~i~iisH~~~~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 996 LDRAIGILDAIRE-GSKMIGIISHVPEFRERIPHRILVKKT 1035 (1042)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCcHHHHHhhCCEEEEEEC
Confidence 4578899999975 699999999999999999999999983
No 357
>KOG0055|consensus
Probab=96.50 E-value=0.0045 Score=55.94 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+.+.|.+.. .|.|.|+|+|+|..... +|+|++|+ |+++.. |+++||.+.
T Consensus 527 ~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~---G~h~ELi~~ 577 (1228)
T KOG0055|consen 527 VVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQ---GTHDELIAL 577 (1228)
T ss_pred HHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEe---cCHHHHHhc
Confidence 4566676654 48899999999999977 99999999 877766 699999884
No 358
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.32 E-value=0.0075 Score=49.86 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=25.0
Q ss_pred hcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 17 HAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 17 ~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..++|+|+|||+++.. ..||+|++|+ |++.
T Consensus 519 ~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 519 RQGKTIIIISHDDQYF-ELADQIIKLAAGCIV 549 (555)
T ss_pred hCCCEEEEEeccHHHH-HhCCEEEEEECCEEE
Confidence 3589999999999865 6899999999 6543
No 359
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.30 E-value=0.0082 Score=49.46 Aligned_cols=42 Identities=26% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
.+++.+.+..+..++|+|+|||+++.. ..||++++|+ |++..
T Consensus 487 ~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 487 EFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRNGQLSE 529 (547)
T ss_pred HHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEEEEECCEEEE
Confidence 345555544433489999999999765 6899999999 65543
No 360
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.26 E-value=0.0056 Score=45.02 Aligned_cols=39 Identities=5% Similarity=0.112 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcC-cEEEEEeCCHHHHHhhcC--EEEEec
Q psy1687 5 HLTLQVIKRFILHAK-KTGFVVEHDFIMATYLSD--RVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~-~tvi~vTHDl~~a~~~~d--riivl~ 43 (107)
..++++|+++.++.| .|+|++|||+.....+|| ++++|.
T Consensus 167 ~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~ 208 (213)
T cd03277 167 RKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVY 208 (213)
T ss_pred HHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEe
Confidence 356788888765434 589999999999999887 677776
No 361
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.20 E-value=0.0085 Score=43.28 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+++++|++++++ |.|+|++|||++++.. |+++-++
T Consensus 164 ~~l~~~l~~~~~~-~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 164 ALFAELIRAHLAQ-GGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCchhhcc--CcEEeec
Confidence 4678888888654 8999999999999987 8888774
No 362
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.19 E-value=0.012 Score=41.10 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.+.+.++..+ +.++|++||+.+++. .+|+++.|+
T Consensus 118 ~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 118 QALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred HHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 3466677777655 889999999999985 589999997
No 363
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.15 E-value=0.015 Score=41.58 Aligned_cols=38 Identities=18% Similarity=0.051 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG 44 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g 44 (107)
..+.+.|++++++ |.|+|++||+.+.+ ..+|+++.+..
T Consensus 135 ~~i~~~L~~~~~~-g~tiIiiSH~~~~~-~~adrvi~i~~ 172 (178)
T cd03239 135 RRVSDMIKEMAKH-TSQFIVITLKKEMF-ENADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHHHhC-CCEEEEEECCHHHH-hhCCeEEEEEE
Confidence 3566778877654 78999999999887 58999999973
No 364
>PTZ00243 ABC transporter; Provisional
Probab=96.14 E-value=0.011 Score=54.65 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=32.1
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.|+|+|+||||++.+ ..||++++|+ |++... |+++++.+
T Consensus 831 ~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~---G~~~~l~~ 870 (1560)
T PTZ00243 831 AGKTRVLATHQVHVV-PRADYVVALGDGRVEFS---GSSADFMR 870 (1560)
T ss_pred CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEe---cCHHHHHh
Confidence 489999999999998 5699999999 776665 57777654
No 365
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.12 E-value=0.014 Score=49.50 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=25.8
Q ss_pred HHhhcCcEEEEEeCCHHHHHhhcCEEEEecCC
Q psy1687 14 FILHAKKTGFVVEHDFIMATYLSDRVIVFEGS 45 (107)
Q Consensus 14 l~~~~~~tvi~vTHDl~~a~~~~driivl~g~ 45 (107)
+.++.|.|+|+||||++.+ .+||++++|+|+
T Consensus 624 ~l~~~~~tvI~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 624 LCREFGITLFSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred HHHHcCCEEEEEeCchHHH-HhCCEEEEEeCC
Confidence 3334589999999999986 789999999864
No 366
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.05 E-value=0.013 Score=48.74 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|+++++ +.+||+|||++..+. +||++++|.
T Consensus 481 ~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~~l~ 516 (563)
T TIGR00634 481 QAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHFKVE 516 (563)
T ss_pred HHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEEEEE
Confidence 457778888863 799999999999985 899999998
No 367
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.02 E-value=0.016 Score=53.46 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC-----CCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG-----SPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g-----~~~~~g~v~tp~~L~~ 60 (107)
.|.+.|.++....++|+|+|||.+..+ ..||+|++|++ +.+. +.|+.++|.+
T Consensus 1396 ~I~~~L~~~~~~~~~TvIiIaHRlsti-~~aD~Ivvl~~~~~~G~iv~--e~Gth~eLl~ 1452 (1466)
T PTZ00265 1396 LIEKTIVDIKDKADKTIITIAHRIASI-KRSDKIVVFNNPDRTGSFVQ--AHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHhccCCCEEEEEechHHHH-HhCCEEEEEeCCCCCCCEEE--EecCHHHHHh
Confidence 466677776433489999999999886 56999999983 3232 3378888875
No 368
>KOG0057|consensus
Probab=96.01 E-value=0.014 Score=49.21 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++++.+.+. ..++|+|+|-||++.+ .-||+|++++ |++... |+-++|..
T Consensus 524 ~~i~~~i~~~--~~~rTvI~IvH~l~ll-~~~DkI~~l~nG~v~e~---gth~ell~ 574 (591)
T KOG0057|consen 524 REILDMIMDV--MSGRTVIMIVHRLDLL-KDFDKIIVLDNGTVKEY---GTHSELLA 574 (591)
T ss_pred HHHHHHHHHh--cCCCeEEEEEecchhH-hcCCEEEEEECCeeEEe---ccHHHHhh
Confidence 4677777773 3589999999999998 5599999999 766655 67777766
No 369
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.92 E-value=0.019 Score=42.10 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|+++. .+.|+|++||+. ++..+||++++|.
T Consensus 168 ~~l~~~l~~~~--~~~~~iivs~~~-~~~~~~d~v~~~~ 203 (212)
T cd03274 168 SIVANYIKERT--KNAQFIVISLRN-NMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHHHc--CCCEEEEEECcH-HHHHhCCEEEEEE
Confidence 45677788774 357999999995 6678999999998
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.87 E-value=0.02 Score=41.97 Aligned_cols=36 Identities=8% Similarity=-0.060 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+++.|+++++ +.++|++||+.+ +..+||++++|.
T Consensus 199 ~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d~i~~l~ 234 (243)
T cd03272 199 TAVANMIKELSD--GAQFITTTFRPE-LLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHhC--CCEEEEEecCHH-HHhhCCEEEEEE
Confidence 356677777743 788888899865 679999999998
No 371
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.021 Score=43.21 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..++++|+++++ +.|+|++|||+..+ .+||+++++. +..+
T Consensus 211 ~~l~~~l~~~~~--~~tii~isH~~~~~-~~~d~~~~l~~~~~~ 251 (276)
T cd03241 211 QAVGKKLKELSR--SHQVLCITHLPQVA-AMADNHFLVEKEVEG 251 (276)
T ss_pred HHHHHHHHHHhC--CCEEEEEechHHHH-HhcCcEEEEEEecCC
Confidence 456677777753 68999999999965 7999999998 5444
No 372
>KOG0061|consensus
Probab=95.78 E-value=0.012 Score=49.86 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeeee
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFRR 75 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~ 75 (107)
-..+++.|++++++ |+|||++-|... ....+-|++++|. |+++.. |+|+++.+ |+...+...+.
T Consensus 206 A~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~---G~~~~~~~----ff~~~G~~~P~ 271 (613)
T KOG0061|consen 206 ALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYS---GSPRELLE----FFSSLGFPCPE 271 (613)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe---cCHHHHHH----HHHhCCCCCCC
Confidence 35789999999988 999999999984 6778999999999 988888 57777665 66777766543
No 373
>PLN03232 ABC transporter C family member; Provisional
Probab=95.65 E-value=0.02 Score=52.67 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=32.3
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++|+|+|||+++.+ ..||+|++|+ |++... |+.+++.+
T Consensus 789 ~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i~~~---Gt~~eL~~ 828 (1495)
T PLN03232 789 KGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEE---GTFAELSK 828 (1495)
T ss_pred cCCEEEEEECChhhH-HhCCEEEEEeCCEEEEe---cCHHHHHh
Confidence 479999999999875 6799999999 766655 68888765
No 374
>PLN03130 ABC transporter C family member; Provisional
Probab=95.49 E-value=0.03 Score=52.06 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=32.2
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++|+|+|||+++.+ ..||+|++|+ |++... |+.++|.+
T Consensus 789 ~~kTvIlVTH~l~~l-~~aD~Ii~L~~G~i~e~---Gt~~eL~~ 828 (1622)
T PLN03130 789 RGKTRVLVTNQLHFL-SQVDRIILVHEGMIKEE---GTYEELSN 828 (1622)
T ss_pred cCCEEEEEECCHhHH-HhCCEEEEEeCCEEEEe---CCHHHHHh
Confidence 479999999999875 6699999999 766655 68888765
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.45 E-value=0.031 Score=41.55 Aligned_cols=36 Identities=11% Similarity=-0.081 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|++++ .|.|+|++||+ .+....||+++-++
T Consensus 207 ~~~~~~l~~~~--~g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 207 QNIGRMIKTHF--KGSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHc--CCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 45667777774 37899999999 55566799998887
No 376
>KOG0054|consensus
Probab=95.45 E-value=0.017 Score=53.05 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=33.7
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.++|+|+|||.++.. .-||.|++|+ |++... |+.++|.+.
T Consensus 692 ~~KT~ILVTHql~~L-~~ad~Iivl~~G~I~~~---Gty~el~~~ 732 (1381)
T KOG0054|consen 692 RGKTVILVTHQLQFL-PHADQIIVLKDGKIVES---GTYEELLKS 732 (1381)
T ss_pred cCCEEEEEeCchhhh-hhCCEEEEecCCeEecc---cCHHHHHhc
Confidence 479999999988876 6799999999 877776 688888863
No 377
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.022 Score=50.08 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCccee----ecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSIST----LANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g----~v~tp~~L~~ 60 (107)
..+++.|.+|.+ .|-|||+|.|+|+.+ .-||+|+=|..+.+..| -.|||+++.+
T Consensus 862 ~kLl~VL~rLvd-~GnTViVIEHNLdVI-k~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 862 KKLLEVLHRLVD-KGNTVIVIEHNLDVI-KTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecccceE-eecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 456677777765 499999999999987 77999999962223333 4589999986
No 378
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.30 E-value=0.034 Score=45.37 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
..+++.|+++. .++|+|+|||+++.. ..||++++|
T Consensus 495 ~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 495 ALVTEALRALA--QGRTVLLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred HHHHHHHHHhc--CCCEEEEEecCHHHH-HhCCEEEeC
Confidence 35666776664 479999999999987 579999986
No 379
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.073 Score=40.66 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhc-CEEEEec-CCCcceeecCCchhHHH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLS-DRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~-driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
|-.+.+.+.++..+ |.++++|||.-..+..+- |++.||- |+++..| .| +|.+
T Consensus 180 lk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG---~~-el~~ 233 (251)
T COG0396 180 LKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG---DP-ELAE 233 (251)
T ss_pred HHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEECCEEEecC---CH-HHHH
Confidence 45677778888654 999999999999998875 9999998 9999885 66 5544
No 380
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.07 E-value=0.058 Score=45.13 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG 44 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g 44 (107)
++.|...-.+..-|||+||||-.++..+|++++++.+
T Consensus 475 ~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 475 LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 3444444445567999999999999999999999997
No 381
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.04 E-value=0.04 Score=42.26 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHH--H-----------HhhcCEEEEecCCCcceeecCCchhH
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIM--A-----------TYLSDRVIVFEGSPSISTLANAPQNL 58 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~--a-----------~~~~driivl~g~~~~~g~v~tp~~L 58 (107)
+..+++.+. .|.|+|++|||.+. + ..++||+++|+++. .. |+++++
T Consensus 209 ~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~-~~---g~~~~i 267 (270)
T TIGR02858 209 VEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK-GP---GTVEAV 267 (270)
T ss_pred HHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC-CC---Cceeec
Confidence 444555543 59999999997666 5 36799999999432 22 455554
No 382
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.89 E-value=0.05 Score=45.50 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
+-..+|..+-....-|+|+||||-.+....|++|+-++ |+....
T Consensus 187 ~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 187 ESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 34556666654333399999999999999999999999 765543
No 383
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.77 E-value=0.032 Score=38.89 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHH---------HHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIM---------ATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~---------a~~~~driivl~g 44 (107)
.+.++++.+.+ .|.|+|+++|+... +..+||.++.|+.
T Consensus 118 ~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 118 EIRRLLFALKR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred HHHHHHHHHHH-CCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 34566766654 48999999999876 7899999999983
No 384
>PRK03918 chromosome segregation protein; Provisional
Probab=94.61 E-value=0.098 Score=45.14 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+.++|..+.. .+.++|+||||.++. .+||++++|.
T Consensus 832 ~l~~~l~~~~~-~~~~iiiith~~~~~-~~~d~~~~l~ 867 (880)
T PRK03918 832 KLVDIMERYLR-KIPQVIIVSHDEELK-DAADYVIRVS 867 (880)
T ss_pred HHHHHHHHHHh-cCCEEEEEECCHHHH-HhCCeEEEEE
Confidence 46677777754 367999999999865 7899999998
No 385
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.58 E-value=0.061 Score=41.30 Aligned_cols=47 Identities=9% Similarity=0.026 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhh-cCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 4 LHLTLQVIKRFILH-AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 4 ~~~i~~ll~~l~~~-~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.+.+.+.|.+++.. .+.++|+|||..+++....++++.++ |++..+|
T Consensus 207 re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 207 REQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 45566667777543 36799999999999999999999999 8877764
No 386
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.51 E-value=0.091 Score=44.21 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+.+.|..+. ..|.|+|+|||-.... ..+|+|.+|+ |+.... |+.+++..
T Consensus 510 AL~~Ai~~~k-~rG~~vvviaHRPs~L-~~~Dkilvl~~G~~~~F---G~r~eVLa 560 (580)
T COG4618 510 ALAAAILAAK-ARGGTVVVIAHRPSAL-ASVDKILVLQDGRIAAF---GPREEVLA 560 (580)
T ss_pred HHHHHHHHHH-HcCCEEEEEecCHHHH-hhcceeeeecCChHHhc---CCHHHHHH
Confidence 3566677774 4599999999999876 7799999999 766665 57677665
No 387
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.47 E-value=0.042 Score=40.66 Aligned_cols=38 Identities=16% Similarity=0.003 Sum_probs=28.3
Q ss_pred HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 10 VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 10 ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
+++.+.++.|.++|++||+ .++..+||++..++ |+...
T Consensus 134 il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~ 172 (222)
T cd03285 134 IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTA 172 (222)
T ss_pred HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEE
Confidence 3455554458899999996 77788999998887 65544
No 388
>PRK10869 recombination and repair protein; Provisional
Probab=94.38 E-value=0.084 Score=44.21 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG 44 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g 44 (107)
..+.++|+++.+ +.+||+|||++.++ .+||+.+++..
T Consensus 471 ~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~k 507 (553)
T PRK10869 471 AVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVSK 507 (553)
T ss_pred HHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEec
Confidence 346777887753 68999999999987 79999999983
No 389
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=94.37 E-value=0.14 Score=45.22 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCccee----ecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSIST----LANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g----~v~tp~~L~~~ 61 (107)
..+++.|++|.+ .|-|+|+|.||-+.. ..||+|+=|....+..| --|+|+++...
T Consensus 520 ~rLi~tL~~LRD-lGNTviVVEHDedti-~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 520 ERLIETLKRLRD-LGNTVIVVEHDEDTI-RAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred HHHHHHHHHHHh-cCCeEEEEecCHHHH-hhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 457778888854 589999999998876 77999998872233344 44899999875
No 390
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.20 E-value=0.045 Score=39.41 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
.+++.+.+ .+.|+|++||+. ....+||+++.|. |+...
T Consensus 132 ~~l~~l~~-~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~ 170 (200)
T cd03280 132 AILEELLE-RGALVIATTHYG-ELKAYAYKREGVENASMEF 170 (200)
T ss_pred HHHHHHHh-cCCEEEEECCHH-HHHHHHhcCCCeEEEEEEE
Confidence 35666654 489999999995 5568999999998 65443
No 391
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.13 E-value=0.14 Score=37.98 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..+-++|.++.++.+.+++-||||-+.|.+.+|++|-+. |..+
T Consensus 170 r~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 456678888887779999999999999999999999997 5433
No 392
>PRK02224 chromosome segregation protein; Provisional
Probab=93.92 E-value=0.15 Score=44.14 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCc-EEEEEeCCHHHHHhhcCEEEEecCCCc
Q psy1687 5 HLTLQVIKRFILHAKK-TGFVVEHDFIMATYLSDRVIVFEGSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~-tvi~vTHDl~~a~~~~driivl~g~~~ 47 (107)
..+.++|+++.. .|. +||+||||.+++. .||+++.+...++
T Consensus 830 ~~~~~~l~~~~~-~~~~qviiish~~~~~~-~ad~~~~~~~~~~ 871 (880)
T PRK02224 830 SQLVDLVESMRR-LGVEQIVVVSHDDELVG-AADDLVRVEKDPT 871 (880)
T ss_pred HHHHHHHHHHHh-cCCCeEEEEECChHHHH-hcCeeEEeecCCC
Confidence 356677777754 354 8999999999985 6999999985454
No 393
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.88 E-value=0.056 Score=38.69 Aligned_cols=34 Identities=9% Similarity=-0.021 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEE
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVI 40 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~drii 40 (107)
..+.++|+++++ .|.|+|++|||.+.+.. ||.-+
T Consensus 164 ~~l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 164 LTIITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence 467788888754 48999999999998855 76544
No 394
>KOG0054|consensus
Probab=93.76 E-value=0.084 Score=48.66 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=34.5
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+.||+.|-|.++-+.. ||||+||+ |+++-. ++|++|.+.
T Consensus 1323 ~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef---dsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1323 KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF---DSPAELLSD 1363 (1381)
T ss_pred cCCeEEEEeeccchhhh-cCeEEEeeCCeEeec---CChHHHHhC
Confidence 47899999999999966 99999999 766544 899999974
No 395
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.28 E-value=0.12 Score=36.92 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEE
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIV 41 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driiv 41 (107)
..++++|+++++ .|.|+|++|||... ..|++++.
T Consensus 164 ~~l~~~l~~~~~-~~~tii~~sH~~~~--~~~~~~~~ 197 (198)
T TIGR01189 164 ALLAGLLRAHLA-RGGIVLLTTHQDLG--LVEARELR 197 (198)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEccccc--ccceEEee
Confidence 467788888865 48999999999854 34577654
No 396
>KOG0062|consensus
Probab=92.83 E-value=0.23 Score=41.88 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=25.9
Q ss_pred CcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 19 KKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 19 ~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
+-.||+||||.++...+|+.+|+.+ |++.
T Consensus 529 ~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 529 NGGVVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred CCcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 5699999999999999999999999 6543
No 397
>PRK01156 chromosome segregation protein; Provisional
Probab=92.75 E-value=0.29 Score=42.65 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhc-C-cEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHA-K-KTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~-~-~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+.++++...... + .|+|+||||.+++ .+||+++.+.
T Consensus 845 ~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d~ii~~~ 883 (895)
T PRK01156 845 NLKDIIEYSLKDSSDIPQVIMISHHRELL-SVADVAYEVK 883 (895)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcCeEEEEE
Confidence 3556666543332 3 4899999999987 6899999998
No 398
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.66 E-value=0.12 Score=36.82 Aligned_cols=33 Identities=9% Similarity=-0.078 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEE
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRV 39 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~dri 39 (107)
..+.++|+... +.|.|+|++|||++++.. ||.+
T Consensus 160 ~~l~~~l~~~~-~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 160 DLLNNLIVMKA-NSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHHHHHHHHHH-hCCCEEEEEeCCccccch-hhee
Confidence 35566776554 358999999999998754 6655
No 399
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.58 E-value=0.09 Score=43.04 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHh-hcCc-----EEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFIL-HAKK-----TGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~-~~~~-----tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.++.+++.++.. +.|. ||++.+||++. .+||++.++. |+++..+
T Consensus 286 ~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 286 AILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDR 336 (438)
T ss_pred HHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEec
Confidence 356788888864 3575 99999999995 9999999998 8777664
No 400
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.08 E-value=0.16 Score=41.65 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHH---------HHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIM---------ATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~---------a~~~~driivl~ 43 (107)
+++++++.+.+ .|.|+|+++|+.+. ...+||.|+.|+
T Consensus 145 ~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 145 EIFRLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 45667777754 59999999999875 278999999997
No 401
>PRK13695 putative NTPase; Provisional
Probab=92.06 E-value=0.2 Score=35.00 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhh
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~ 67 (107)
..++.+..+. +.+.++|+|+|+ ..+..++|++..+.+..+.. .|+++=-+.++.+++
T Consensus 114 ~~~~~l~~~~-~~~~~~i~v~h~-~~~~~~~~~i~~~~~~~i~~---~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 114 KFVKAVEEVL-DSEKPVIATLHR-RSVHPFVQEIKSRPGGRVYE---LTPENRDSLPFEILN 170 (174)
T ss_pred HHHHHHHHHH-hCCCeEEEEECc-hhhHHHHHHHhccCCcEEEE---EcchhhhhHHHHHHH
Confidence 3567777776 468999999999 46668899999998323333 366554444544443
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=91.89 E-value=0.4 Score=34.80 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCcEEEEEeCCHHHHHhh--cCEEEEe
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFIMATYL--SDRVIVF 42 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~--~driivl 42 (107)
.+++++.+ .|.|+|++|||++++..+ .+++-.+
T Consensus 129 ~ll~~l~~-~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 129 AVLKFLKN-KNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHH-CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 35677754 489999999999999876 4555444
No 403
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.65 E-value=0.21 Score=40.92 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..++++|+++ .|.|+|+|||+.+.. ..||++++|.
T Consensus 516 ~~~~~~l~~~---~~~~iiiish~~~~~-~~~d~~~~l~ 550 (562)
T PHA02562 516 KALLSILDSL---KDTNVFVISHKDHDP-QKFDRHLKME 550 (562)
T ss_pred HHHHHHHHhC---CCCeEEEEECchhch-hhhhcEEEEE
Confidence 3466667666 378999999997665 6799999998
No 404
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.45 E-value=0.51 Score=42.34 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
+..+++.|.++.. .|+||++|||+.++..++..+|.|-+
T Consensus 993 ~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~i~~qi~V~k 1031 (1047)
T PRK10246 993 LDTALDALDALNA-SGKTIGVISHVEAMKERIPVQIKVKK 1031 (1047)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEecHHHHHHhccceEEEEE
Confidence 4678889999965 49999999999999999999999998
No 405
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.34 E-value=0.17 Score=36.74 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC---------HHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD---------FIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD---------l~~a~~~~driivl~ 43 (107)
.+.++++.+. +.|.|+++++|. ...+..+||.+++|+
T Consensus 132 ~l~~l~~~lk-~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 132 ELFRFYSSLR-ETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred HHHHHHHHHH-hCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 4566777775 459999999995 344788999999997
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.29 E-value=0.22 Score=35.76 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=25.0
Q ss_pred HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 10 VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 10 ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
+++.+. +.+.++|++||+.+++. .|+++..+. ++...
T Consensus 133 ll~~l~-~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~ 170 (202)
T cd03243 133 VLEHLL-EKGCRTLFATHFHELAD-LPEQVPGVKNLHMEE 170 (202)
T ss_pred HHHHHH-hcCCeEEEECChHHHHH-HhhcCCCeEEEEEEE
Confidence 345554 34899999999998875 566666555 54443
No 407
>KOG2355|consensus
Probab=91.11 E-value=0.32 Score=37.25 Aligned_cols=43 Identities=14% Similarity=0.001 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
++++.++.=++++|.|||.+||-.+=.+.|...++.++ |++..
T Consensus 185 dLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 185 DLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 56777888788899999999999999999999999999 87665
No 408
>KOG0058|consensus
Probab=91.06 E-value=0.44 Score=41.34 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+-+.|.++.+ +.|||+|.|-|.-+ +-||+|+|++ |++.-. |+-++|.+.
T Consensus 642 lVq~aL~~~~~--~rTVlvIAHRLSTV-~~Ad~Ivvi~~G~V~E~---G~h~eLl~~ 692 (716)
T KOG0058|consen 642 LVQEALDRLMQ--GRTVLVIAHRLSTV-RHADQIVVIDKGRVVEM---GTHDELLSK 692 (716)
T ss_pred HHHHHHHHhhc--CCeEEEEehhhhHh-hhccEEEEEcCCeEEec---ccHHHHhhC
Confidence 35566666653 59999999999998 6699999999 877665 577777763
No 409
>KOG0055|consensus
Probab=90.40 E-value=0.5 Score=43.26 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
+-+.|.+.. .|.|+|+|.|-|... +-||.|+|++ |+++-+ ||-++|..
T Consensus 1165 VQeALd~a~--~gRT~IvIAHRLSTI-qnaD~I~Vi~~G~VvE~---GtH~~L~~ 1213 (1228)
T KOG0055|consen 1165 VQEALDRAM--EGRTTIVIAHRLSTI-QNADVIAVLKNGKVVEQ---GTHDELLA 1213 (1228)
T ss_pred HHHHHHHhh--cCCcEEEEecchhhh-hcCCEEEEEECCEEEec---ccHHHHHh
Confidence 455566653 489999999999997 7799999999 766655 68888776
No 410
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=90.13 E-value=0.68 Score=40.55 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHH---------hhcCEEEEec-CCC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMAT---------YLSDRVIVFE-GSP 46 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~---------~~~driivl~-g~~ 46 (107)
..+.++++++.+ .|.+++++||+++.+. ..|++.++|. ++.
T Consensus 672 ~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 672 DKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 356777777754 5889999999999986 6899999997 543
No 411
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.06 E-value=0.38 Score=39.44 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHH--------HHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIM--------ATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~--------a~~~~driivl~g 44 (107)
+++..|.+++++.|.|+++++|.... +..++|.++.|++
T Consensus 199 ~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~ 245 (454)
T TIGR00416 199 ECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 245 (454)
T ss_pred HHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence 45566788888889999999997654 6789999999983
No 412
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.20 E-value=0.41 Score=41.83 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|++++. +.++|+||||+++. .+||+++.+.
T Consensus 1130 ~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d~~~~~~ 1165 (1179)
T TIGR02168 1130 ERFANLLKEFSK--NTQFIVITHNKGTM-EVADQLYGVT 1165 (1179)
T ss_pred HHHHHHHHHhcc--CCEEEEEEcChhHH-HHhhhHeeee
Confidence 456778888753 47899999999986 6799998876
No 413
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.88 E-value=0.43 Score=34.63 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHH--------HHHhhcCEEEEec
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFI--------MATYLSDRVIVFE 43 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~--------~a~~~~driivl~ 43 (107)
++..+.++.++.|.|+++++|... .+..+||.|+.|+
T Consensus 144 ~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 144 YSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 344455565677999999999643 3567899999998
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.45 E-value=0.68 Score=33.83 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHHhhcC
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSD 37 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~d 37 (107)
..+++.+.+. |.++|++||+.+++..+++
T Consensus 131 ~~il~~l~~~-~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 131 LAILECLIKK-ESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHhc-CCEEEEECChHHHHHHhhc
Confidence 3456666544 8999999999999988775
No 415
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=87.97 E-value=0.74 Score=32.73 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=20.7
Q ss_pred HHHHHHHhhcCcEEEEEeCCHHHHHhhcCE
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDR 38 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~dr 38 (107)
.+++.+.++.+.++|++||+.+. ..+||+
T Consensus 102 ~~l~~l~~~~~~~iii~TH~~~l-~~~~~~ 130 (185)
T smart00534 102 AVLEYLLEKIGALTLFATHYHEL-TKLADE 130 (185)
T ss_pred HHHHHHHhcCCCeEEEEecHHHH-HHHhhc
Confidence 45566654348899999999964 567774
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=87.13 E-value=0.92 Score=33.29 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+++.+.+..+.++|++||+.++ ..++|++.-+.
T Consensus 132 ~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~~~v~ 166 (216)
T cd03284 132 WAIVEYLHEKIGAKTLFATHYHEL-TELEGKLPRVK 166 (216)
T ss_pred HHHHHHHHhccCCcEEEEeCcHHH-HHHhhcCCCeE
Confidence 344555544348899999999755 56788765443
No 417
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=86.41 E-value=1.3 Score=32.30 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHH-------HHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIM-------ATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~-------a~~~~driivl~g 44 (107)
++++.++.+.+ .|.|+++++|+... +..++|-++.|+.
T Consensus 143 ~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 143 NFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 33444555554 48899999997654 6788899988873
No 418
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=86.24 E-value=1.3 Score=32.88 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=21.0
Q ss_pred HHHHHhhcCcEEEEEeCCHHHHHhhc
Q psy1687 11 IKRFILHAKKTGFVVEHDFIMATYLS 36 (107)
Q Consensus 11 l~~l~~~~~~tvi~vTHDl~~a~~~~ 36 (107)
++.+.+..+.++|++||+++++..++
T Consensus 135 l~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 135 LEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 55565434899999999999999887
No 419
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=85.79 E-value=1.6 Score=36.26 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++...|+++. .|.|-+++-|-+.-... ||.|+||+ |+++-. |+-++|..
T Consensus 436 ~~iq~~l~~~~--~~rttlviahrlsti~~-adeiivl~~g~i~er---g~h~~ll~ 486 (497)
T COG5265 436 QAIQAALREVS--AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVER---GTHEELLA 486 (497)
T ss_pred HHHHHHHHHHh--CCCeEEEEeehhhhccC-CceEEEeeCCEEEec---CcHHHHHH
Confidence 35666777765 47899999999999855 99999999 766655 68777776
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=85.23 E-value=2.2 Score=35.73 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCc
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPS 47 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~ 47 (107)
.+.+-|.+++++.|+|.++|||..++...+ =|+++.+. |+..
T Consensus 545 rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 545 RVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 355667777888899999999999999999 68887776 6443
No 421
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=85.22 E-value=1.5 Score=38.56 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
..+.++|+.+.. +.++|++||+.... .+||+++.+. .+.+.
T Consensus 1115 ~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~~~~~~~~~~g~ 1156 (1164)
T TIGR02169 1115 ERVAKLIREKAG--EAQFIVVSLRSPMI-EYADRAIGVTMRRNGE 1156 (1164)
T ss_pred HHHHHHHHHhcC--CCeEEEEECcHHHH-HhcceeEeEEEecCCe
Confidence 346677777643 47899999998755 8999999987 43443
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=83.11 E-value=1.9 Score=32.07 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=21.1
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHHhh
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~ 35 (107)
..+++.+.+..+.++|++||+.+++...
T Consensus 133 ~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 133 YATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 4566666654578999999999997544
No 423
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=82.99 E-value=1.3 Score=36.45 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHH---------HHHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFI---------MATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~---------~a~~~~driivl~g 44 (107)
.+.++++.+ ++.|.|+++++|+.+ ....+||.++.|+.
T Consensus 155 ~l~~L~~~L-k~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~~ 201 (509)
T PRK09302 155 ELRRLFAWL-KQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILRN 201 (509)
T ss_pred HHHHHHHHH-HhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEeE
Confidence 344555545 456999999999865 34569999999983
No 424
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=82.77 E-value=1.8 Score=28.46 Aligned_cols=26 Identities=8% Similarity=-0.211 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHH
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMAT 33 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~ 33 (107)
+.-+.+..++.+.|+|+++|..+...
T Consensus 116 l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 116 LRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred HHHHHHHHhcCCceEEEEEecCCccc
Confidence 33334444556999999999876543
No 425
>KOG0062|consensus
Probab=80.79 E-value=0.72 Score=39.00 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCC
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGS 45 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~ 45 (107)
.+|..+-.+.+.|+|+|+||-++....|..||-+++.
T Consensus 235 ~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~ 271 (582)
T KOG0062|consen 235 AWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENL 271 (582)
T ss_pred HHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhh
Confidence 4555565666789999999999999999999999853
No 426
>PRK04296 thymidine kinase; Provisional
Probab=80.46 E-value=7.2 Score=27.84 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHHhhcCcEEEEEeCC----------HHHHHhhcCEEEEecC
Q psy1687 2 FPLHLTLQVIKRFILHAKKTGFVVEHD----------FIMATYLSDRVIVFEG 44 (107)
Q Consensus 2 ~~~~~i~~ll~~l~~~~~~tvi~vTHD----------l~~a~~~~driivl~g 44 (107)
||..++.++++.+. ..|++++++-++ ......+||.|.-|+.
T Consensus 90 l~~~~v~~l~~~l~-~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~ 141 (190)
T PRK04296 90 LDKEQVVQLAEVLD-DLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 141 (190)
T ss_pred CCHHHHHHHHHHHH-HcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence 45556777777664 459999999999 3467789999999985
No 427
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=79.53 E-value=2.6 Score=30.99 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIM 31 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~ 31 (107)
.+++.|++++++.|.|+++++|+..-
T Consensus 136 ~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 136 AVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 46788888888889999999998744
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.35 E-value=2.3 Score=37.22 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCC
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGS 45 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~ 45 (107)
.++..+.+ .|.++|++||+.+++...+++..++++.
T Consensus 431 aile~l~~-~~~~vIitTH~~el~~~~~~~~~v~~~~ 466 (782)
T PRK00409 431 SILEYLRK-RGAKIIATTHYKELKALMYNREGVENAS 466 (782)
T ss_pred HHHHHHHH-CCCEEEEECChHHHHHHHhcCCCeEEEE
Confidence 34555544 5889999999999999999888777643
No 429
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.62 E-value=2.6 Score=38.70 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=22.8
Q ss_pred HHHHHHHHHh----hcCcEEEEEeCCHHHHHhhcC
Q psy1687 7 TLQVIKRFIL----HAKKTGFVVEHDFIMATYLSD 37 (107)
Q Consensus 7 i~~ll~~l~~----~~~~tvi~vTHDl~~a~~~~d 37 (107)
+.+.|.++.. ..|.|+|+||||++++..+|.
T Consensus 1244 l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~ 1278 (1311)
T TIGR00606 1244 LAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGR 1278 (1311)
T ss_pred HHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhh
Confidence 4455555532 247899999999999998863
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=77.55 E-value=3.9 Score=29.91 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=21.4
Q ss_pred HHHHHHHHhh--cCcEEEEEeCCHHHHHhhc
Q psy1687 8 LQVIKRFILH--AKKTGFVVEHDFIMATYLS 36 (107)
Q Consensus 8 ~~ll~~l~~~--~~~tvi~vTHDl~~a~~~~ 36 (107)
..+++++.+. .+.++|++||+.+++..+.
T Consensus 131 ~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 131 IATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 3567777543 1358999999999998764
No 431
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.95 E-value=5.7 Score=35.12 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
+-.+++.|..+... +.+|++||||-++. ..+|.++.++
T Consensus 859 l~~l~~~l~~i~~~-~~qiiIISH~eel~-e~~~~~i~V~ 896 (908)
T COG0419 859 LEKLAEILEELLSD-GRQIIIISHVEELK-ERADVRIRVK 896 (908)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeChHHHH-HhCCeEEEEE
Confidence 34677888888655 89999999999998 5566666666
No 432
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=76.38 E-value=6.6 Score=29.02 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH----------------------HHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI----------------------MATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~----------------------~a~~~~driivl~ 43 (107)
+.+++..|++++++.+.|+++++|--. .+..+||-++.|.
T Consensus 166 ~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~ 227 (271)
T cd01122 166 LDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALE 227 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEE
Confidence 346777888898889999999998321 3456777777776
No 433
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=76.29 E-value=5.1 Score=28.25 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHH--HHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIM--ATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~--a~~~~driivl~ 43 (107)
++.+.+.+.. +.|.+|++.+|.+.+ ...+||.++++.
T Consensus 93 ~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~ 131 (188)
T TIGR00152 93 WMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVD 131 (188)
T ss_pred HHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEE
Confidence 3445554443 235799999999966 778999999998
No 434
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=74.91 E-value=6.3 Score=32.66 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG 44 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g 44 (107)
-=+.+.++.|.++.|.+.|+|+=-...-...||+|+.|+.
T Consensus 374 TPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~ 413 (448)
T PF09818_consen 374 TPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDE 413 (448)
T ss_pred chHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecC
Confidence 3456778888888899999999999999999999999994
No 435
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=74.75 E-value=1.5 Score=36.50 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=25.2
Q ss_pred hhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 16 LHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 16 ~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
++.||||+.||||=.- ...|||++-|. |+...
T Consensus 496 K~qGKTI~aIsHDd~Y-F~~ADrll~~~~G~~~e 528 (546)
T COG4615 496 KEQGKTIFAISHDDHY-FIHADRLLEMRNGQLSE 528 (546)
T ss_pred HHhCCeEEEEecCchh-hhhHHHHHHHhcCceee
Confidence 4569999999999665 36689999998 76554
No 436
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=74.60 E-value=5.2 Score=28.65 Aligned_cols=39 Identities=8% Similarity=0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-------------HHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-------------MATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-------------~a~~~~driivl~ 43 (107)
.+++..|++++++.+.|+|+++|--. ....+||.++.|.
T Consensus 134 ~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~i~l~ 185 (218)
T cd01394 134 AKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLE 185 (218)
T ss_pred HHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEEEEEE
Confidence 44555677888888999999988321 3466778888887
No 437
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=73.51 E-value=4.8 Score=28.99 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDF 29 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl 29 (107)
+.+++..|++++++++.|||+++|-.
T Consensus 145 l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 145 LAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 45778889999988999999887644
No 438
>KOG0927|consensus
Probab=73.25 E-value=8.5 Score=32.98 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCc-EEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 7 TLQVIKRFILHAKK-TGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 7 i~~ll~~l~~~~~~-tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
...+|..+-.+... ++|+++|+-++.-.+|+.|+-|. ++....
T Consensus 256 A~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 256 AIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred HHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 34455555444445 89999999999999999999999 553443
No 439
>KOG0927|consensus
Probab=72.62 E-value=2.4 Score=36.20 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=27.5
Q ss_pred HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 10 VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 10 ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+.....+..-+||+|+||..++..+++++++..
T Consensus 547 ~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~ 580 (614)
T KOG0927|consen 547 ALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCE 580 (614)
T ss_pred HHHHHHhccCCceeeeechhhHHHHHHHHhHhhc
Confidence 3333334456699999999999999999999998
No 440
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=72.27 E-value=5.5 Score=33.33 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
|+-++.+.+.++... +.++|.||--++.....+||+++|+ -++.
T Consensus 368 tl~pl~dei~s~~gd-~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 368 TLTPLVDEIGSLRGD-LISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred cchHHHHhhhhhccC-ceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 455666777766432 4899999999999999999999998 4443
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=72.13 E-value=3.9 Score=31.50 Aligned_cols=62 Identities=6% Similarity=-0.012 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITF 73 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~ 73 (107)
.++.++++.++ ..+.+++.++|+.+. ....+|+..|. |++... +.|++... ..+.+.+++-+
T Consensus 230 ~e~~~~l~a~~-~g~~~~i~T~Ha~~~-~~~~~Rl~~l~~~~~~~~---g~~~~~~~--~~i~~~~d~ii 292 (308)
T TIGR02788 230 DEAFDFIRAVN-TGHPGSITTLHAGSP-EEAFEQLALMVKSSQAGL---GLDFAYIV--KLVREVIDIVV 292 (308)
T ss_pred HHHHHHHHHHh-cCCCeEEEEEeCCCH-HHHHHHHHHHhhcccccc---CCCHHHHH--HHHHHhCCEEE
Confidence 36677777775 223467999999994 45599999886 666655 35555543 22334444443
No 442
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=71.90 E-value=8.6 Score=27.71 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHH-------------HHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFI-------------MATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~-------------~a~~~~driivl~ 43 (107)
.++..|++++++.|.|++++.|--. ....+||-++.|+
T Consensus 139 ~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~ii~l~ 189 (225)
T PRK09361 139 RQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKTILRLE 189 (225)
T ss_pred HHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccEEEEEE
Confidence 3445577788888999999987321 3456667666665
No 443
>COG3910 Predicted ATPase [General function prediction only]
Probab=71.11 E-value=10 Score=28.66 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
++++..|+++++. |.-+|++||..-+.+--.-+|+-++
T Consensus 165 lella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 165 LELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred HHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence 5788888888765 8999999999998888888888887
No 444
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=70.49 E-value=4.2 Score=30.08 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHH--------HHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIM--------ATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~--------a~~~~driivl~ 43 (107)
.+++++++++.++ |.|+ ++||+... ...+||-++.|+
T Consensus 140 ~~l~~~l~~l~~~-g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 140 NDLMAFFKRISSL-NKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHhC-CCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 4677888888654 7755 55676554 356778888887
No 445
>PRK11823 DNA repair protein RadA; Provisional
Probab=70.40 E-value=11 Score=30.83 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC--------HHHHHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD--------FIMATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD--------l~~a~~~~driivl~g 44 (107)
+++..|.+++++.|.|++++.|- ......++|.++.+.+
T Consensus 185 ~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le~ 231 (446)
T PRK11823 185 ECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFEG 231 (446)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEEc
Confidence 45566778888889999999994 2346888999998874
No 446
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=69.61 E-value=8.5 Score=30.83 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHH--------HHHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFI--------MATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~--------~a~~~~driivl~g 44 (107)
+++..|.+++++.|.|++++.|--. ....++|.++.+.+
T Consensus 187 ~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~ 233 (372)
T cd01121 187 ECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 233 (372)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEc
Confidence 4556677888888999999988433 36789999999984
No 447
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=68.86 E-value=9 Score=27.17 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-------------HHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-------------MATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-------------~a~~~~driivl~ 43 (107)
.+.+..|++++++.|.|++++.|-.. ....++|-++.|+
T Consensus 126 ~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~~~~~~~gg~~~~~~~d~vi~l~ 177 (209)
T TIGR02237 126 ARQLTLLLSLARKKNLAVVITNQVYTDVNNGTLRPLGGHLLEHWSKVILRLE 177 (209)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccEEecCCCCCcCCCcchhheeeeEEEEEE
Confidence 34556678888888999999988321 2466667666665
No 448
>KOG0056|consensus
Probab=68.31 E-value=7.9 Score=33.31 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+-..|.+++. |.|-|+|.|.+.-+ --||.|.+++ |+++.. |.-|+|..
T Consensus 712 ~IQaaL~rlca--~RTtIVvAHRLSTi-vnAD~ILvi~~G~IvEr---G~HeeLl~ 761 (790)
T KOG0056|consen 712 AIQAALARLCA--NRTTIVVAHRLSTI-VNADLILVISNGRIVER---GRHEELLK 761 (790)
T ss_pred HHHHHHHHHhc--CCceEEEeeeehhe-ecccEEEEEeCCeEeec---CcHHHHHh
Confidence 45566777763 78999999999987 4599999999 766554 67777765
No 449
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=68.23 E-value=6.7 Score=28.84 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=20.7
Q ss_pred hhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 16 LHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 16 ~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
++.|+..|+||||.+.+. ...||+-|
T Consensus 182 r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 182 RAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HhcCCCeEEEecccccCC-CCCeeeee
Confidence 356999999999999986 66676655
No 450
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=67.69 E-value=7.3 Score=28.18 Aligned_cols=39 Identities=8% Similarity=-0.114 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHH-------------------HHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIM-------------------ATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~-------------------a~~~~driivl~ 43 (107)
.++++.|++++++.|.++++++|--.. ....||-++.|.
T Consensus 149 ~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~ 206 (242)
T cd00984 149 AEISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLY 206 (242)
T ss_pred HHHHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEe
Confidence 467788899998999999999983221 245677777776
No 451
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=64.97 E-value=3.2 Score=26.27 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=9.3
Q ss_pred HhCceeeccCC
Q psy1687 97 RAGQYFFYEEP 107 (107)
Q Consensus 97 ~~~~~~~~~~~ 107 (107)
.+|+||++|+|
T Consensus 15 ~SG~Yy~vd~P 25 (75)
T PF15232_consen 15 ESGQYYVVDAP 25 (75)
T ss_pred CCCCEEEEecC
Confidence 37999999987
No 452
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=63.10 E-value=11 Score=26.95 Aligned_cols=26 Identities=8% Similarity=-0.058 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI 30 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~ 30 (107)
.+++..|++++++.+.++|+++|--.
T Consensus 145 ~~~~~~L~~~a~~~~~~vi~tnq~~~ 170 (226)
T cd01393 145 SQALRKLLRLADKFNVAVVFTNQVRA 170 (226)
T ss_pred HHHHHHHHHHHHHhCcEEEEEEEEee
Confidence 45667788888888999999988543
No 453
>KOG0065|consensus
Probab=62.64 E-value=4.4 Score=37.81 Aligned_cols=44 Identities=9% Similarity=0.161 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHH-HHhhcCEEEEec--CCCccee
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIM-ATYLSDRVIVFE--GSPSIST 50 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~-a~~~~driivl~--g~~~~~g 50 (107)
-+++.+|++++ +|.||+..-|.... ..+--|++++|+ |+.+..|
T Consensus 968 ~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G 1014 (1391)
T KOG0065|consen 968 IVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFG 1014 (1391)
T ss_pred HHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEec
Confidence 58999999987 59999999999864 456789999998 5555555
No 454
>KOG0065|consensus
Probab=61.26 E-value=17 Score=34.12 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCC-HHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeee
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHD-FIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITF 73 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHD-l~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~ 73 (107)
-+++.+.|+++++..+.|.+++-+. -+++..+-|.|++|. |+++.+| +-+++.. |++.++..-
T Consensus 296 al~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G---p~d~~~~----yFe~~Gf~c 360 (1391)
T KOG0065|consen 296 AFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQG---PRDEVLP----YFEDMGFKC 360 (1391)
T ss_pred HHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEec---cHHHHHH----HHHhcCccC
Confidence 3678899999998878877777554 567889999999999 9998885 6566555 455554433
No 455
>KOG0066|consensus
Probab=58.94 E-value=4.1 Score=34.62 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=24.5
Q ss_pred CcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687 19 KKTGFVVEHDFIMATYLSDRVIVFEG 44 (107)
Q Consensus 19 ~~tvi~vTHDl~~a~~~~driivl~g 44 (107)
.+|.++|+||-.+....|..||-|+.
T Consensus 459 kKTLLIVSHDQgFLD~VCtdIIHLD~ 484 (807)
T KOG0066|consen 459 KKTLLIVSHDQGFLDSVCTDIIHLDN 484 (807)
T ss_pred hheeEEEecccchHHHHHHHHhhhhh
Confidence 57999999999999999999999994
No 456
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=57.89 E-value=37 Score=21.70 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEe-CCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVE-HDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vT-HDl~~a~~~~driivl~ 43 (107)
.++.+.++.+ ++.|..+|.+| ..-+.+..+||.++.+.
T Consensus 67 ~~~~~~~~~a-k~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 67 RELIELLRFA-KERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred hhhhhhhHHH-HhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 3566777744 55677777777 46788889999999998
No 457
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=57.64 E-value=26 Score=24.85 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcC--EEEEecCCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSD--RVIVFEGSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~d--riivl~g~~~~~g~v~tp~~L~~ 60 (107)
+++-.+.+...+.|.-|+++|.|=++..-+.+ +|..++.. ......-+++.+.+
T Consensus 112 DvIatla~~~~~~~~~v~IvS~DkD~~QLv~~~~~V~~~~~~-~~~~~~~~~~~v~e 167 (169)
T PF02739_consen 112 DVIATLAKKASEEGFEVIIVSGDKDLLQLVDENVNVYLLDPG-KKKFKVYDPEEVEE 167 (169)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-SSGGGGGGTCS-TSEEEEETT-TTCS-EB-HHHHHH
T ss_pred HHHHHHHhhhccCCCEEEEEcCCCCHHHhcCCCceEEEeecC-CCCCEEEcHHHHhh
Confidence 44555555555667889999999999999999 78888731 22223355555543
No 458
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=57.53 E-value=60 Score=23.42 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH-----HHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeeee
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI-----MATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFRR 75 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~-----~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~ 75 (107)
..++.+.|+++. .++.|+...++.. +++..||++++-. +.++..|-+.+... +..+++.+++.+..
T Consensus 48 ~~~l~~~i~~~~--~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~----~~~~l~k~Gv~~~~ 119 (207)
T TIGR00706 48 SEEIYEKLKKLK--AKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGAN----VEKLYEKLGIEFEV 119 (207)
T ss_pred HHHHHHHHHHhc--CCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCC----HHHHHHhCCceEEE
Confidence 456677777664 3677777777654 3446799988776 54455553333333 34466777777643
No 459
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=57.23 E-value=16 Score=27.52 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHD 28 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHD 28 (107)
|..++..|++++++.+.+||++.|-
T Consensus 163 L~~~~~~L~~lA~~~~iaVvvTNqv 187 (256)
T PF08423_consen 163 LARLARILKRLARKYNIAVVVTNQV 187 (256)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCceEEeecee
Confidence 5678889999999999999988653
No 460
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=54.55 E-value=80 Score=22.85 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH-----HHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeeee
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI-----MATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFRR 75 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~-----~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~ 75 (107)
..++.+.|+++.+ ++.|+..-+..- .++..||.++.-. +..+..|-+...-.+ ..+++.+++.+..
T Consensus 60 ~~~l~~~l~~~~~--~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~----~~ll~k~Gi~~~~ 131 (214)
T cd07022 60 VFELADAIRAARA--GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQ----SKALEKAGLKVTL 131 (214)
T ss_pred HHHHHHHHHHHhc--CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCH----HHHHHhCCCeEEE
Confidence 4456677777753 787777777652 4446799888766 444455533333332 3466677776543
No 461
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=53.72 E-value=80 Score=22.62 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-----HHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeeee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-----MATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFRR 75 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-----~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~ 75 (107)
.++.+.++.+.+ .++.++..-|..- .++..||+++.-. +..+..|-+.+.-.+ ..+++.++++...
T Consensus 53 ~~i~~~i~~~~~-~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~----~~~l~k~Gi~~~~ 124 (208)
T cd07023 53 EEIYREIRRLRK-AKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNL----EELLDKLGIERDT 124 (208)
T ss_pred HHHHHHHHHHHh-cCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCH----HHHHHhcCCceEE
Confidence 456666776643 4788887777654 4557799988877 545555533333332 3356677766543
No 462
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=53.17 E-value=46 Score=23.67 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+.++|+++.+ +.-+|++||+-+++ ..||+.+-+.
T Consensus 178 ~l~~~l~~~~~--~~Q~ii~Th~~~~~-~~a~~~~~v~ 212 (220)
T PF02463_consen 178 RLADLLKELSK--QSQFIITTHNPEMF-EDADKLIGVT 212 (220)
T ss_dssp HHHHHHHHHTT--TSEEEEE-S-HHHH-TT-SEEEEEE
T ss_pred ccccccccccc--cccccccccccccc-cccccccccc
Confidence 45666766642 47899999997776 5678877665
No 463
>KOG0066|consensus
Probab=52.78 E-value=19 Score=30.77 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGS 45 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~ 45 (107)
|-++.|..-..+.+-.||+||||-.++....=.+||+..+
T Consensus 738 ESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 738 ESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQ 777 (807)
T ss_pred hhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccC
Confidence 3445555554566779999999999999988899999843
No 464
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=50.54 E-value=23 Score=28.12 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDF 29 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl 29 (107)
|.+++..|++++++.|.++|++.|-.
T Consensus 248 L~~~l~~L~~lA~~~~vaVviTNqv~ 273 (342)
T PLN03186 248 LGKFLRSLQRLADEFGVAVVITNQVV 273 (342)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCEE
Confidence 45777888899989999999998753
No 465
>PRK06193 hypothetical protein; Provisional
Probab=49.30 E-value=23 Score=26.22 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhc
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLS 36 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~ 36 (107)
++.++|+++. ..+.++++|+|+........
T Consensus 143 ~l~~~I~~l~-~~~~~vLlVgHnp~i~~l~g 172 (206)
T PRK06193 143 GLRPLLTTPP-DPGTNTVLVGHDDNLEAATG 172 (206)
T ss_pred HHHHHHhhCC-CCCCeEEEEeCchHHHHHhC
Confidence 4556666664 34679999999987765443
No 466
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=48.18 E-value=25 Score=27.39 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDF 29 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl 29 (107)
|.+++..|++++++.+.++|++.|-.
T Consensus 221 l~~~~~~L~~la~~~~vavv~tNqv~ 246 (316)
T TIGR02239 221 LARFLRSLQRLADEFGVAVVITNQVV 246 (316)
T ss_pred HHHHHHHHHHHHHHhCCEEEEECceE
Confidence 35677788899888999999987643
No 467
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=47.13 E-value=1.1e+02 Score=22.20 Aligned_cols=64 Identities=8% Similarity=-0.014 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-----HHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-----MATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITF 73 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-----~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~ 73 (107)
.++.+.|+.+.. .++.|+..-|... .+...||.++.=. +..+..|-+.+.-.. ..+++.++++.
T Consensus 57 ~~~~~~l~~~~~-~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~----~~~l~k~Gv~~ 126 (211)
T cd07019 57 EVIRAELAAARA-AGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTV----ENSLDSIGVHT 126 (211)
T ss_pred HHHHHHHHHHHh-CCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCH----HHHHHhcCCce
Confidence 455666766644 4888888888875 5667799988866 555666633333332 33555666654
No 468
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=46.37 E-value=27 Score=27.96 Aligned_cols=40 Identities=8% Similarity=-0.042 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCC----------------H---HHHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHD----------------F---IMATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHD----------------l---~~a~~~~driivl~ 43 (107)
+.++.+.|++++++.+.+||+++|= + ......||-|++|.
T Consensus 330 i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~ 388 (434)
T TIGR00665 330 VSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLY 388 (434)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEec
Confidence 3466788999999999999999981 1 12356889888887
No 469
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=46.10 E-value=50 Score=21.46 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=20.4
Q ss_pred HHHHHHHHHhh---cCcEEEEEeCCHHHHHhhc
Q psy1687 7 TLQVIKRFILH---AKKTGFVVEHDFIMATYLS 36 (107)
Q Consensus 7 i~~ll~~l~~~---~~~tvi~vTHDl~~a~~~~ 36 (107)
+.+.+.++... .+..+++|||+-.....++
T Consensus 84 ~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~ 116 (153)
T cd07040 84 VLNALLELLARHLLDGKNVLIVSHGGTIRALLA 116 (153)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence 45555655543 3679999999988765443
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=44.55 E-value=38 Score=30.05 Aligned_cols=28 Identities=11% Similarity=-0.050 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHh
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATY 34 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~ 34 (107)
.+.+.++++.+ .|.+++++||+++.+..
T Consensus 708 ~i~~~lk~~RK-~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 708 KIREWLKVLRK-ANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHHHHHHHh-cCCEEEEEeCCHHHHhh
Confidence 45677777754 58899999999998875
No 471
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=44.49 E-value=53 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCcEEEEEeC--------CHHHHHh-hcCEEEEec
Q psy1687 9 QVIKRFILHAKKTGFVVEH--------DFIMATY-LSDRVIVFE 43 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTH--------Dl~~a~~-~~driivl~ 43 (107)
..+.+..++.|.|++++.| ....... +||-++.|+
T Consensus 141 ~~l~~~l~~~~~t~llt~~~~~~~~~~~~~~i~~~l~D~vI~L~ 184 (226)
T PF06745_consen 141 RALIKFLKSRGVTTLLTSEMPSGSEDDGTFGIEHYLADGVIELR 184 (226)
T ss_dssp HHHHHHHHHTTEEEEEEEEESSSSSSSSSTSHHHHHSSEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEccccCcccccccchhhhcccEEEEEE
Confidence 3333333566888888877 1223334 999999998
No 472
>PRK00064 recF recombination protein F; Reviewed
Probab=43.91 E-value=43 Score=26.42 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=20.6
Q ss_pred CcEEEEEeCCHHHHHhhc--CEEEEec-CC
Q psy1687 19 KKTGFVVEHDFIMATYLS--DRVIVFE-GS 45 (107)
Q Consensus 19 ~~tvi~vTHDl~~a~~~~--driivl~-g~ 45 (107)
+..++++||+.+....++ ++++.++ |+
T Consensus 329 ~~qv~it~~~~~~~~~~~~~~~i~~v~~G~ 358 (361)
T PRK00064 329 GAQVFITTTDLEDLADLLENAKIFHVEQGK 358 (361)
T ss_pred CCEEEEEcCChhhhhhhhccCcEEEEeCCE
Confidence 568999999998877764 4788887 53
No 473
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=43.67 E-value=76 Score=22.36 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDF 29 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl 29 (107)
++.+++..+.+ .+.|+|+|+-++
T Consensus 104 ~i~~l~~~l~~-~~~~~viVsnEv 126 (169)
T cd00544 104 EIDALLAAVRN-KPGTLILVSNEV 126 (169)
T ss_pred HHHHHHHHHHc-CCCcEEEEECCc
Confidence 34446665543 578889998776
No 474
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=42.47 E-value=88 Score=21.71 Aligned_cols=38 Identities=16% Similarity=0.001 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.++++..++.+.+.|.. +.+|||++++..-+|=|+...
T Consensus 44 ~~~~~~~~~~~~~~g~~-i~~~~~~~e~l~~aDvvy~~~ 81 (158)
T PF00185_consen 44 PEVLEKAKKNAKKNGGK-ITITDDIEEALKGADVVYTDR 81 (158)
T ss_dssp HHHHHHHHHHHHHHTTE-EEEESSHHHHHTT-SEEEEES
T ss_pred HHHHHHHHHHHHHhCCC-eEEEeCHHHhcCCCCEEEEcC
Confidence 36777777777666655 445599999999999877764
No 475
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=42.33 E-value=47 Score=30.26 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=25.8
Q ss_pred HHHHHHHHHh--hcCcEEEEEeCCHHHHHhh-cCEEEEec
Q psy1687 7 TLQVIKRFIL--HAKKTGFVVEHDFIMATYL-SDRVIVFE 43 (107)
Q Consensus 7 i~~ll~~l~~--~~~~tvi~vTHDl~~a~~~-~driivl~ 43 (107)
.++.++.... ..|.+||++|||...+... +|+++-+.
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 3444444322 2478999999999999765 68877665
No 476
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=42.28 E-value=39 Score=23.10 Aligned_cols=30 Identities=10% Similarity=0.253 Sum_probs=19.5
Q ss_pred HHHHHHHHHhh-cCcEEEEEeCCHHHHHhhc
Q psy1687 7 TLQVIKRFILH-AKKTGFVVEHDFIMATYLS 36 (107)
Q Consensus 7 i~~ll~~l~~~-~~~tvi~vTHDl~~a~~~~ 36 (107)
+.+.+.++.++ .+.+|++|||---....++
T Consensus 124 ~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~ 154 (177)
T TIGR03162 124 VSEFLEELLKAHEGDNVLIVTHGGVIRALLA 154 (177)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHH
Confidence 44555666544 4678999999876654443
No 477
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=42.13 E-value=93 Score=22.67 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH----HHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeee
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI----MATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFR 74 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~----~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~ 74 (107)
+.++.+.|+++.+ .++.|+..-.... .++..||+|++-. +..+..|-+...-. +..+++.+++++.
T Consensus 64 ~~el~~~i~~~~~-~~kpVia~~~~~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~----~~~ll~klGv~~~ 134 (222)
T cd07018 64 LEELRQALERFRA-SGKPVIAYADGYSQGQYYLASAADEIYLNPSGSVELTGLSAETLF----FKGLLDKLGVEVQ 134 (222)
T ss_pred HHHHHHHHHHHHH-hCCeEEEEeCCCCchhhhhhhhCCEEEECCCceEEeeccchhhhh----HHHHHHHcCCcEE
Confidence 5677788888854 4777665544332 4456799998876 55555553333322 3346667777664
No 478
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.12 E-value=28 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=18.6
Q ss_pred EEEEEeCCHHHHHhhc---CEEEEec-CC
Q psy1687 21 TGFVVEHDFIMATYLS---DRVIVFE-GS 45 (107)
Q Consensus 21 tvi~vTHDl~~a~~~~---driivl~-g~ 45 (107)
.+++++|+.+.+..+| ++++.++ |+
T Consensus 240 q~ii~~~~~~~~~~~~~~~~~i~~l~~g~ 268 (270)
T cd03242 240 QTFVTTTDLADFDALWLRRAQIFRVDAGT 268 (270)
T ss_pred CEEEEeCCchhccchhccCccEEEEeCcE
Confidence 5677777877777887 7788886 53
No 479
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=41.58 E-value=37 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDF 29 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl 29 (107)
+.+++..|++++++.+.++|++.|-.
T Consensus 221 l~~~~~~L~~la~~~~vavvitNqv~ 246 (313)
T TIGR02238 221 LAQMLSRLNKISEEFNVAVFVTNQVQ 246 (313)
T ss_pred HHHHHHHHHHHHHHcCcEEEEECceE
Confidence 45677788889988999999998743
No 480
>PTZ00035 Rad51 protein; Provisional
Probab=41.48 E-value=37 Score=26.70 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDF 29 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl 29 (107)
|.+++..|++++++.|.|+|++.|-.
T Consensus 243 l~~~~~~L~~la~~~~vavvvtNqv~ 268 (337)
T PTZ00035 243 LGKFLRALQKLADEFNVAVVITNQVM 268 (337)
T ss_pred HHHHHHHHHHHHHHcCcEEEEecceE
Confidence 45677888888888899999987643
No 481
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=41.44 E-value=64 Score=25.56 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
.++.+..+.+++..|.+ +.+|||++.|..-||-|+.-
T Consensus 195 ~~~~~~~~~~~~~~g~~-~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 195 EELVALAREIAKETGAK-ITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred HHHHHHHHHHHHHcCCe-EEEEcCHHHHhCCCCEEEEc
Confidence 45667777777666765 66799999999999988884
No 482
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=41.26 E-value=37 Score=26.13 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEH 27 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTH 27 (107)
.+++..|++++++.|.|+|+++|
T Consensus 229 ~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 229 NKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred HHHHHHHHHHHHHhCCEEEEece
Confidence 34566778888889999999988
No 483
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=40.93 E-value=67 Score=25.37 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
|..++.+..++++++.|.+ +.++||++.|..-||-|+.-
T Consensus 194 p~~~~~~~~~~~~~~~g~~-~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 194 PEASLVEMCEKFAKESGAR-ITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CCHHHHHHHHHHHHHcCCe-EEEEcCHHHHhCCCCEEEEc
Confidence 4456667777777666766 56799999999999988873
No 484
>PF13611 Peptidase_S76: Serine peptidase of plant viral polyprotein, P1
Probab=40.46 E-value=41 Score=23.11 Aligned_cols=31 Identities=3% Similarity=-0.081 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHH
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMAT 33 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~ 33 (107)
|+.++++.+.+++.+.|+++.+|.|-=.-+.
T Consensus 34 ~i~dL~~~~~~ic~ergiPIe~I~~~k~k~~ 64 (121)
T PF13611_consen 34 EIDDLVREVTEICCERGIPIEIIDKKKRKAF 64 (121)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEecCcceecc
Confidence 6778889999999999999999988765543
No 485
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=39.96 E-value=39 Score=24.89 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-------------------HHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-------------------MATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-------------------~a~~~~driivl~ 43 (107)
-++.+-|+.++.+.+.+||.++|==. .+.+.||.+++|.
T Consensus 156 ~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~ 213 (259)
T PF03796_consen 156 GEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLH 213 (259)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhc
Confidence 46788899999999999999988211 2356677777776
No 486
>PRK13764 ATPase; Provisional
Probab=39.24 E-value=55 Score=28.17 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCcEEEEEeC---------------CHHHHHhhcCEEEEec-CCC
Q psy1687 7 TLQVIKRFILHAKKTGFVVEH---------------DFIMATYLSDRVIVFE-GSP 46 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTH---------------Dl~~a~~~~driivl~-g~~ 46 (107)
-++++..++. .|..++.+.| ++..+..++|++++++ |++
T Consensus 338 t~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 338 DFKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HHHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence 4455555643 4778888999 9999999999999999 766
No 487
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.86 E-value=75 Score=20.39 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC-HHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD-FIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD-l~~a~~~~driivl~ 43 (107)
++.+.++.. ++.|..+|.+|.+ -.....+||.++.+.
T Consensus 62 ~~~~~~~~a-~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 62 ELLNLLPHL-KRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred HHHHHHHHH-HHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 567777765 4558777777764 466678999988886
No 488
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=37.44 E-value=53 Score=22.56 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIM 31 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~ 31 (107)
.++.+.|+.+..+.+.++++|.|+...
T Consensus 86 ~~~~~~l~~~~~~~~~~vliVgH~P~i 112 (152)
T TIGR00249 86 GLVSDYLEALTNEGVASVLLVSHLPLV 112 (152)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCCH
Confidence 456777777765445799999999866
No 489
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=37.38 E-value=80 Score=20.79 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=19.8
Q ss_pred HHHHHHHHHhh-cCcEEEEEeCCHHHHHhh
Q psy1687 7 TLQVIKRFILH-AKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 7 i~~ll~~l~~~-~~~tvi~vTHDl~~a~~~ 35 (107)
+.+.+.++.+. .+.++++|+|..-.-..+
T Consensus 86 ~~~~~~~l~~~~~~~~iliV~H~~~i~~~~ 115 (153)
T cd07067 86 VLPALEELIAPHDGKNVLIVSHGGVLRALL 115 (153)
T ss_pred HHHHHHHHHHhCCCCeEEEEeChHHHHHHH
Confidence 55666666553 367899999987765443
No 490
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=37.08 E-value=42 Score=24.94 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=17.5
Q ss_pred HHHHHHHhhcCcEEEEEeCCHHHHHhh
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~ 35 (107)
.+++.|.+..+..++++||+.+++...
T Consensus 146 aile~l~~~~~~~~i~~TH~~~l~~~~ 172 (235)
T PF00488_consen 146 AILEYLLEKSGCFVIIATHFHELAELL 172 (235)
T ss_dssp HHHHHHHHTTT-EEEEEES-GGGGGHH
T ss_pred HHHHHHHHhccccEEEEeccchhHHHh
Confidence 455666553477899999999886543
No 491
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.49 E-value=75 Score=23.86 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g 44 (107)
.+.++|.+- ++.|.++|=+=||-+.-...|||++-+..
T Consensus 190 vVveli~e~-Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 190 VVVELIREA-KARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHHHH-HhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 466777765 45699999999999999999999998873
No 492
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=36.47 E-value=42 Score=26.77 Aligned_cols=24 Identities=8% Similarity=-0.027 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEH 27 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTH 27 (107)
+-++.+-|++++++.+.+||+++|
T Consensus 329 ~~~i~~~Lk~lAke~~i~Vi~lsQ 352 (421)
T TIGR03600 329 LGGISRGLKALAKELDVPVVLLAQ 352 (421)
T ss_pred HHHHHHHHHHHHHHhCCcEEEecc
Confidence 456888899999999999999998
No 493
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=36.07 E-value=98 Score=18.49 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeC-CHHHHHhhcCE---EEEecCCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEH-DFIMATYLSDR---VIVFEGSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTH-Dl~~a~~~~dr---iivl~g~~~~~g~v~tp~~L~~ 60 (107)
..+...++++.++.|..+-++.- |.++|..+.-. .++++|+....|...+.+++.+
T Consensus 14 ~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~ 73 (76)
T TIGR00412 14 QMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAVDGELVIMGKIPSKEEIKE 73 (76)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHHH
Confidence 34566778888777665555555 48888665322 3455776666553333345443
No 494
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=35.75 E-value=95 Score=24.63 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|..++.+..++.+++.|.+ +.++||+++|..-||-|+.-.
T Consensus 194 ~~~~~~~~~~~~~~~~g~~-i~~~~d~~ea~~~aDvvytd~ 233 (336)
T PRK03515 194 PEAALVTECRALAQKNGGN-ITLTEDIAEGVKGADFIYTDV 233 (336)
T ss_pred CcHHHHHHHHHHHHHcCCe-EEEEcCHHHHhCCCCEEEecC
Confidence 3455666666776666765 668999999999999887753
No 495
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=35.73 E-value=86 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.-++++..++++++.|.. +.++||+++|..-||=|+...
T Consensus 232 ~~~i~~~a~~~~~~~G~~-i~~~~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 232 MPEVVEVAKKNAKASGGS-FRQVNSMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHHHHHHHHHHcCCe-EEEEcCHHHHhCCCCEEEEcC
Confidence 345666666666666754 567999999999999888874
No 496
>PRK10949 protease 4; Provisional
Probab=35.21 E-value=2.9e+02 Score=23.87 Aligned_cols=66 Identities=12% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH----HHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeee
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI----MATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFR 74 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~----~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~ 74 (107)
+.++.+.|.++.+ .||.|+....... .++..||+|++=. |.++..|- ..+.+. +..+++.+++++.
T Consensus 131 ~~eI~~ai~~fk~-sGKpVvA~~~~~~s~~YyLASaAD~I~l~P~G~v~~~G~--~~~~~~--~k~lLdKlGV~~~ 201 (618)
T PRK10949 131 MQYIGKALREFRD-SGKPVYAVGDSYSQGQYYLASFANKIYLSPQGVVDLHGF--ATNGLY--YKSLLDKLKVSTH 201 (618)
T ss_pred HHHHHHHHHHHHH-hCCeEEEEecCccchhhhhhhhCCEEEECCCceEEEeee--ecchhh--HHHHHHHcCCeEE
Confidence 4678888988854 5898888766665 3456799999976 76666662 222211 3456677777764
No 497
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=35.01 E-value=2.1e+02 Score=22.02 Aligned_cols=55 Identities=27% Similarity=0.190 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCcEEE-EEeCCHHHHHhhcCE--EEEec-CCCccee-ecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGF-VVEHDFIMATYLSDR--VIVFE-GSPSIST-LANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi-~vTHDl~~a~~~~dr--iivl~-g~~~~~g-~v~tp~~L~~ 60 (107)
.+.++.-+.|.++ |.+++ +.+-|+.+|..+.+- -.+|- |.++..| .+.+|+.+..
T Consensus 110 ~~tv~aa~~L~~~-Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~ 169 (248)
T cd04728 110 IETLKAAEILVKE-GFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRI 169 (248)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHH
Confidence 4556666666654 99888 999999999888764 34466 6666655 3334555443
No 498
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=34.93 E-value=46 Score=24.77 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFI 30 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~ 30 (107)
.++++|++|.+ .|++||++.|...
T Consensus 121 ~fl~~l~~L~~-~g~nII~tAhe~~ 144 (220)
T TIGR01618 121 WFLDLLTVLKE-SNKNIYATAWELT 144 (220)
T ss_pred HHHHHHHHHHh-CCCcEEEEEeecc
Confidence 46778888865 7999999999873
No 499
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.75 E-value=53 Score=28.94 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCcEEEEEeCCHHHHHh
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFIMATY 34 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~~a~~ 34 (107)
.++..+.+ .|.++|++||+.++...
T Consensus 426 aiLe~l~~-~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 426 SILEYLLK-QNAQVLITTHYKELKAL 450 (771)
T ss_pred HHHHHHHh-cCCEEEEECChHHHHHH
Confidence 45666644 58999999999998654
No 500
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J.
Probab=34.70 E-value=1e+02 Score=20.06 Aligned_cols=28 Identities=11% Similarity=-0.011 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhc-CcEEEEEeCCHHHHH
Q psy1687 6 LTLQVIKRFILHA-KKTGFVVEHDFIMAT 33 (107)
Q Consensus 6 ~i~~ll~~l~~~~-~~tvi~vTHDl~~a~ 33 (107)
.+++....+.++. +..|+++|.|.++..
T Consensus 92 ~Il~~a~~~~~~~~~~~vvLvT~D~~l~~ 120 (133)
T PF13638_consen 92 RILNCALYLQEENPGRKVVLVTNDKNLRL 120 (133)
T ss_dssp HHHHHHHHHHHHCGCEEEEEEE--HHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCHHHHH
Confidence 4566666666555 789999999998764
Done!