Query psy1687
Match_columns 107
No_of_seqs 182 out of 1634
Neff 6.6
Searched_HMMs 29240
Date Sat Aug 17 00:11:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j16_B RLI1P; ribosome recycli 99.8 2.7E-21 9.2E-26 159.5 9.2 102 5-106 504-605 (608)
2 3bk7_A ABC transporter ATP-bin 99.8 6.6E-20 2.3E-24 151.0 10.8 100 5-104 508-607 (607)
3 3ozx_A RNAse L inhibitor; ATP 99.8 2.6E-19 8.9E-24 145.7 10.9 102 5-106 422-523 (538)
4 1yqt_A RNAse L inhibitor; ATP- 99.8 7.9E-19 2.7E-23 142.6 10.6 101 5-105 438-538 (538)
5 4g1u_C Hemin import ATP-bindin 99.1 5.3E-10 1.8E-14 83.5 8.1 53 5-60 184-237 (266)
6 3tui_C Methionine import ATP-b 98.9 1.6E-09 5.5E-14 84.8 5.9 53 5-60 200-253 (366)
7 3rlf_A Maltose/maltodextrin im 98.9 2.3E-09 7.9E-14 84.3 5.8 53 5-60 170-223 (381)
8 3fvq_A Fe(3+) IONS import ATP- 98.9 3.2E-09 1.1E-13 82.9 6.1 53 5-60 175-228 (359)
9 1oxx_K GLCV, glucose, ABC tran 98.8 7.4E-09 2.5E-13 80.4 6.0 53 5-60 177-230 (353)
10 3gfo_A Cobalt import ATP-bindi 98.8 2.8E-09 9.4E-14 80.2 3.3 53 5-60 180-233 (275)
11 2it1_A 362AA long hypothetical 98.8 7.9E-09 2.7E-13 80.6 5.9 53 5-60 170-223 (362)
12 1g29_1 MALK, maltose transport 98.8 8.3E-09 2.8E-13 80.6 5.9 53 5-60 176-229 (372)
13 3d31_A Sulfate/molybdate ABC t 98.8 9.9E-09 3.4E-13 79.6 6.3 53 5-60 164-217 (348)
14 2yyz_A Sugar ABC transporter, 98.8 8.8E-09 3E-13 80.2 6.0 53 5-60 170-223 (359)
15 1v43_A Sugar-binding transport 98.8 9.5E-09 3.3E-13 80.4 5.9 53 5-60 178-231 (372)
16 1z47_A CYSA, putative ABC-tran 98.8 9E-09 3.1E-13 80.1 5.8 53 5-60 182-235 (355)
17 1b0u_A Histidine permease; ABC 98.7 1.3E-08 4.5E-13 75.6 5.6 52 5-60 190-242 (262)
18 2onk_A Molybdate/tungstate ABC 98.7 1.3E-08 4.6E-13 74.8 5.5 52 5-59 163-215 (240)
19 2olj_A Amino acid ABC transpor 98.7 2.2E-08 7.4E-13 74.7 6.0 52 5-60 196-248 (263)
20 3tif_A Uncharacterized ABC tra 98.7 2.1E-08 7.1E-13 73.4 4.7 45 5-50 182-227 (235)
21 2nq2_C Hypothetical ABC transp 98.6 9E-08 3.1E-12 70.8 7.8 51 5-59 165-216 (253)
22 1ji0_A ABC transporter; ATP bi 98.6 4.3E-08 1.5E-12 71.8 5.1 51 5-59 176-227 (240)
23 2qi9_C Vitamin B12 import ATP- 98.6 5.3E-08 1.8E-12 72.0 5.4 51 5-59 170-221 (249)
24 1g6h_A High-affinity branched- 98.6 2.9E-08 9.9E-13 73.4 3.7 49 5-57 190-239 (257)
25 1vpl_A ABC transporter, ATP-bi 98.6 6.8E-08 2.3E-12 71.7 5.3 52 5-60 183-235 (256)
26 2yz2_A Putative ABC transporte 98.5 5.6E-08 1.9E-12 72.3 3.7 52 5-60 175-227 (266)
27 2pcj_A ABC transporter, lipopr 98.5 1.5E-07 5.1E-12 68.2 5.5 44 5-50 177-221 (224)
28 2ixe_A Antigen peptide transpo 98.5 1.3E-07 4.5E-12 70.6 4.6 52 5-60 193-245 (271)
29 2ihy_A ABC transporter, ATP-bi 98.4 1.9E-07 6.3E-12 70.1 3.2 51 5-59 198-251 (279)
30 3ux8_A Excinuclease ABC, A sub 98.4 4.2E-07 1.4E-11 74.9 5.5 51 5-60 583-640 (670)
31 2zu0_C Probable ATP-dependent 98.3 1.8E-07 6E-12 69.6 2.8 52 5-60 201-254 (267)
32 1mv5_A LMRA, multidrug resista 98.3 8.7E-07 3E-11 64.8 5.9 49 6-60 177-226 (243)
33 3nh6_A ATP-binding cassette SU 98.3 7.1E-07 2.4E-11 68.0 5.4 51 5-61 227-278 (306)
34 3bk7_A ABC transporter ATP-bin 98.3 2.1E-06 7.1E-11 70.7 8.3 55 5-60 265-319 (607)
35 3j16_B RLI1P; ribosome recycli 98.3 1.9E-06 6.4E-11 71.1 7.4 60 5-65 258-317 (608)
36 2ff7_A Alpha-hemolysin translo 98.2 7.3E-07 2.5E-11 65.6 3.9 50 5-60 182-232 (247)
37 2d2e_A SUFC protein; ABC-ATPas 98.2 5.6E-07 1.9E-11 66.2 3.1 48 5-56 180-229 (250)
38 1znw_A Guanylate kinase, GMP k 98.2 2.2E-07 7.6E-12 65.6 0.8 39 5-43 164-202 (207)
39 3ux8_A Excinuclease ABC, A sub 98.2 2.1E-06 7.2E-11 70.7 6.2 51 5-60 241-298 (670)
40 3pih_A Uvrabc system protein A 98.2 1.6E-06 5.6E-11 74.5 5.1 51 5-60 845-902 (916)
41 2ghi_A Transport protein; mult 98.2 1.2E-06 4E-11 65.0 3.5 50 5-60 192-242 (260)
42 3ozx_A RNAse L inhibitor; ATP 98.1 5.1E-06 1.7E-10 67.5 6.6 50 5-56 175-224 (538)
43 2pjz_A Hypothetical protein ST 98.1 1.3E-06 4.6E-11 65.0 2.6 49 5-60 165-215 (263)
44 1yqt_A RNAse L inhibitor; ATP- 98.1 9.8E-06 3.4E-10 65.7 7.3 45 5-50 195-239 (538)
45 2vf7_A UVRA2, excinuclease ABC 98.0 4.6E-06 1.6E-10 71.2 5.4 51 5-60 770-827 (842)
46 3qf4_B Uncharacterized ABC tra 98.0 6.4E-06 2.2E-10 67.2 5.6 50 5-60 528-578 (598)
47 3qf4_A ABC transporter, ATP-bi 98.0 5.5E-06 1.9E-10 67.6 5.1 51 5-61 516-567 (587)
48 3pih_A Uvrabc system protein A 98.0 6.1E-06 2.1E-10 71.0 5.1 51 5-60 503-560 (916)
49 3b5x_A Lipid A export ATP-bind 98.0 9.5E-06 3.3E-10 65.9 5.6 50 5-60 517-567 (582)
50 2yl4_A ATP-binding cassette SU 98.0 8.4E-06 2.9E-10 66.3 5.2 50 5-60 520-570 (595)
51 2r6f_A Excinuclease ABC subuni 97.9 1.2E-05 4E-10 69.7 5.9 51 5-60 885-942 (972)
52 3gd7_A Fusion complex of cysti 97.9 4E-06 1.4E-10 65.8 2.6 51 5-61 192-243 (390)
53 3b60_A Lipid A export ATP-bind 97.9 9E-06 3.1E-10 66.0 4.1 50 5-60 517-567 (582)
54 2ygr_A Uvrabc system protein A 97.9 1.7E-05 5.7E-10 68.9 5.8 51 5-60 903-960 (993)
55 3qf7_A RAD50; ABC-ATPase, ATPa 97.9 1.1E-05 3.7E-10 62.3 4.2 41 5-47 322-363 (365)
56 2pze_A Cystic fibrosis transme 97.8 6E-06 2E-10 59.9 2.2 38 19-60 180-218 (229)
57 4a82_A Cystic fibrosis transme 97.8 1E-05 3.5E-10 65.7 3.7 50 5-60 514-564 (578)
58 2cbz_A Multidrug resistance-as 97.8 5.3E-06 1.8E-10 60.5 1.3 39 18-60 178-217 (237)
59 2ygr_A Uvrabc system protein A 97.8 4.6E-05 1.6E-09 66.1 6.9 51 5-60 560-617 (993)
60 2r6f_A Excinuclease ABC subuni 97.7 3.2E-05 1.1E-09 67.0 5.3 51 5-60 543-600 (972)
61 1sgw_A Putative ABC transporte 97.7 3.8E-06 1.3E-10 60.8 -1.1 41 5-46 170-210 (214)
62 2ehv_A Hypothetical protein PH 97.6 5.5E-05 1.9E-09 53.5 4.6 37 6-43 160-206 (251)
63 2bbs_A Cystic fibrosis transme 97.6 4.8E-05 1.6E-09 57.3 3.9 39 18-60 208-247 (290)
64 3g5u_A MCG1178, multidrug resi 97.5 3.2E-05 1.1E-09 68.2 2.8 50 6-61 1209-1259(1284)
65 2vf7_A UVRA2, excinuclease ABC 97.5 0.0001 3.5E-09 62.9 5.9 51 5-60 418-475 (842)
66 1cr0_A DNA primase/helicase; R 97.5 0.00011 3.6E-09 54.2 5.1 41 5-45 173-236 (296)
67 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00013 4.6E-09 50.6 5.4 41 4-44 143-191 (235)
68 4aby_A DNA repair protein RECN 97.5 0.00014 4.8E-09 55.8 5.9 42 5-49 334-380 (415)
69 1f2t_B RAD50 ABC-ATPase; DNA d 97.5 9.8E-05 3.4E-09 50.5 4.3 37 5-43 100-136 (148)
70 3g5u_A MCG1178, multidrug resi 97.5 0.00017 5.6E-09 63.7 6.1 50 6-61 564-614 (1284)
71 2iw3_A Elongation factor 3A; a 97.4 0.00019 6.6E-09 62.2 5.9 48 6-60 586-635 (986)
72 4a74_A DNA repair and recombin 97.2 0.00039 1.3E-08 48.4 4.9 39 5-43 156-198 (231)
73 1tf7_A KAIC; homohexamer, hexa 97.2 0.00027 9.3E-09 56.6 4.1 38 5-43 162-208 (525)
74 2iw3_A Elongation factor 3A; a 97.2 0.00033 1.1E-08 60.8 4.9 34 17-50 946-980 (986)
75 4ad8_A DNA repair protein RECN 97.2 0.00048 1.6E-08 55.0 5.5 36 5-43 436-471 (517)
76 4f4c_A Multidrug resistance pr 97.0 0.00025 8.6E-09 62.7 2.3 48 7-60 1256-1304(1321)
77 4f4c_A Multidrug resistance pr 96.9 0.00048 1.6E-08 61.0 3.6 50 5-60 591-641 (1321)
78 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00092 3.2E-08 53.3 4.0 48 9-60 278-338 (460)
79 4gp7_A Metallophosphoesterase; 96.7 0.0006 2.1E-08 46.6 2.1 30 5-35 136-165 (171)
80 3qkt_A DNA double-strand break 96.7 0.0019 6.4E-08 48.9 4.8 37 5-43 291-327 (339)
81 2cvh_A DNA repair and recombin 96.5 0.0027 9.4E-08 43.8 4.5 40 5-44 132-184 (220)
82 1tf7_A KAIC; homohexamer, hexa 96.4 0.0013 4.5E-08 52.6 2.2 39 6-45 395-444 (525)
83 1n0w_A DNA repair protein RAD5 96.3 0.0061 2.1E-07 42.6 5.0 40 4-43 149-207 (243)
84 2o8b_B DNA mismatch repair pro 95.9 0.0041 1.4E-07 54.1 3.1 41 7-47 890-930 (1022)
85 1e69_A Chromosome segregation 95.4 0.017 5.7E-07 43.2 4.3 36 5-43 260-297 (322)
86 2obl_A ESCN; ATPase, hydrolase 94.9 0.00029 1E-08 54.2 -6.8 44 5-50 198-248 (347)
87 3lda_A DNA repair protein RAD5 94.7 0.049 1.7E-06 42.6 5.4 39 5-43 304-361 (400)
88 1w1w_A Structural maintenance 94.2 0.057 1.9E-06 41.8 4.8 36 6-43 375-410 (430)
89 3auy_A DNA double-strand break 94.1 0.049 1.7E-06 41.5 4.2 35 6-43 325-359 (371)
90 2dr3_A UPF0273 protein PH0284; 94.1 0.084 2.9E-06 36.7 5.1 39 5-43 149-195 (247)
91 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.0075 2.6E-07 45.8 -0.7 51 6-60 253-304 (330)
92 3kta_B Chromosome segregation 93.8 0.1 3.5E-06 36.2 5.0 36 5-43 105-140 (173)
93 2o5v_A DNA replication and rep 93.7 0.027 9.1E-07 43.5 1.9 42 6-58 312-354 (359)
94 2dpy_A FLII, flagellum-specifi 93.5 0.00091 3.1E-08 53.0 -6.8 43 5-49 285-336 (438)
95 3b9q_A Chloroplast SRP recepto 93.2 0.14 4.9E-06 38.3 5.3 53 8-60 236-298 (302)
96 2r6a_A DNAB helicase, replicat 93.1 0.09 3.1E-06 41.1 4.1 40 4-43 339-397 (454)
97 3thx_A DNA mismatch repair pro 93.0 0.025 8.7E-07 48.8 1.0 40 8-48 764-804 (934)
98 2bdt_A BH3686; alpha-beta prot 92.4 0.011 3.7E-07 40.2 -1.8 46 8-58 136-182 (189)
99 1nlf_A Regulatory protein REPA 92.0 0.13 4.4E-06 37.3 3.5 30 5-34 157-186 (279)
100 3b85_A Phosphate starvation-in 91.8 0.058 2E-06 38.3 1.4 27 5-34 137-163 (208)
101 2og2_A Putative signal recogni 91.2 0.34 1.2E-05 37.3 5.3 53 8-60 293-355 (359)
102 1ye8_A Protein THEP1, hypothet 90.7 0.26 9E-06 33.8 3.9 31 8-38 119-152 (178)
103 3jvv_A Twitching mobility prot 90.2 0.045 1.6E-06 42.1 -0.4 36 6-43 209-244 (356)
104 1pzn_A RAD51, DNA repair and r 88.3 0.38 1.3E-05 36.5 3.5 45 4-48 261-306 (349)
105 3thx_B DNA mismatch repair pro 87.9 0.21 7.3E-06 43.0 2.1 32 6-38 772-804 (918)
106 1wb9_A DNA mismatch repair pro 87.6 0.17 5.8E-06 42.9 1.3 35 8-43 709-743 (800)
107 1rj9_A FTSY, signal recognitio 82.8 3.7 0.00013 30.5 6.6 25 6-30 235-259 (304)
108 2eyu_A Twitching motility prot 82.0 0.22 7.7E-06 36.3 -0.5 34 7-43 113-146 (261)
109 3e70_C DPA, signal recognition 75.7 7.5 0.00026 29.2 6.3 55 6-60 256-320 (328)
110 1z6g_A Guanylate kinase; struc 74.3 1.1 3.8E-05 31.3 1.3 36 6-41 165-206 (218)
111 1s96_A Guanylate kinase, GMP k 67.5 5.5 0.00019 28.0 3.7 34 18-62 129-162 (219)
112 2v9p_A Replication protein E1; 67.1 0.7 2.4E-05 34.8 -1.2 42 26-72 236-278 (305)
113 3hr8_A Protein RECA; alpha and 65.8 15 0.00051 28.0 6.1 39 5-43 174-228 (356)
114 3bgw_A DNAB-like replicative h 63.8 8.8 0.0003 29.9 4.5 41 4-44 335-394 (444)
115 1lw7_A Transcriptional regulat 63.8 0.95 3.3E-05 34.0 -1.0 50 5-59 305-354 (365)
116 1ewq_A DNA mismatch repair pro 61.6 7.9 0.00027 32.6 4.1 25 10-36 680-704 (765)
117 2ius_A DNA translocase FTSK; n 61.4 7.6 0.00026 31.3 3.8 33 10-42 323-362 (512)
118 3bh0_A DNAB-like replicative h 60.4 8.2 0.00028 28.4 3.6 41 4-44 206-265 (315)
119 3ec2_A DNA replication protein 60.2 1.8 6.1E-05 28.7 -0.0 25 6-31 121-145 (180)
120 2zr9_A Protein RECA, recombina 59.7 14 0.00048 27.8 4.9 37 7-43 173-228 (349)
121 2zts_A Putative uncharacterize 59.5 16 0.00055 24.7 4.8 40 4-43 157-206 (251)
122 2z43_A DNA repair and recombin 57.0 17 0.00057 26.7 4.8 27 4-30 233-259 (324)
123 1ls1_A Signal recognition part 56.3 0.58 2E-05 34.6 -3.4 39 6-48 26-65 (295)
124 1v5w_A DMC1, meiotic recombina 51.7 14 0.00047 27.5 3.6 27 4-30 249-275 (343)
125 1q57_A DNA primase/helicase; d 50.7 12 0.00042 29.1 3.3 39 5-43 380-440 (503)
126 3szr_A Interferon-induced GTP- 50.5 22 0.00074 28.8 4.9 45 5-49 171-229 (608)
127 2i1q_A DNA repair and recombin 49.7 18 0.00061 26.3 3.9 40 4-43 234-289 (322)
128 4a1f_A DNAB helicase, replicat 49.1 12 0.0004 28.4 2.9 40 4-43 181-239 (338)
129 1tq4_A IIGP1, interferon-induc 47.9 4 0.00014 31.9 0.1 39 5-43 203-252 (413)
130 4h31_A Otcase, ornithine carba 47.5 64 0.0022 24.6 6.9 39 3-42 219-257 (358)
131 2q6t_A DNAB replication FORK h 45.8 14 0.00047 28.5 2.9 40 4-43 338-396 (444)
132 2b8t_A Thymidine kinase; deoxy 44.4 51 0.0017 23.2 5.5 37 6-43 104-150 (223)
133 1nij_A Hypothetical protein YJ 42.4 7.9 0.00027 28.5 1.0 31 5-37 167-197 (318)
134 1jjv_A Dephospho-COA kinase; P 42.1 24 0.00081 23.5 3.3 26 19-44 105-132 (206)
135 1ujc_A Phosphohistidine phosph 42.0 32 0.0011 22.4 3.9 28 6-33 87-114 (161)
136 3asz_A Uridine kinase; cytidin 38.9 5.8 0.0002 26.7 -0.2 39 6-44 138-188 (211)
137 2gza_A Type IV secretion syste 36.7 13 0.00044 28.0 1.4 36 6-43 265-300 (361)
138 3hjg_A Putative alpha-ribazole 36.5 30 0.001 23.7 3.2 29 7-35 129-157 (213)
139 3kzn_A Aotcase, N-acetylornith 35.6 84 0.0029 23.8 5.9 39 4-43 235-273 (359)
140 2ewv_A Twitching motility prot 35.5 4.3 0.00015 30.9 -1.5 34 7-43 224-257 (372)
141 1xx6_A Thymidine kinase; NESG, 35.1 68 0.0023 21.9 4.9 37 6-43 96-142 (191)
142 3r7a_A Phosphoglycerate mutase 34.9 38 0.0013 23.2 3.6 28 7-34 158-189 (237)
143 2qai_A V-type ATP synthase sub 34.8 40 0.0014 21.5 3.4 30 3-32 32-61 (111)
144 1h2e_A Phosphatase, YHFR; hydr 34.2 41 0.0014 22.7 3.6 27 8-34 130-157 (207)
145 2kjq_A DNAA-related protein; s 34.1 38 0.0013 21.9 3.3 23 5-28 101-124 (149)
146 2j85_A STIV B116; viral protei 33.9 36 0.0012 22.5 3.0 29 34-62 76-105 (122)
147 1vim_A Hypothetical protein AF 33.4 83 0.0028 21.1 5.1 37 6-43 104-141 (200)
148 1oth_A Protein (ornithine tran 33.1 55 0.0019 24.7 4.4 40 3-43 192-231 (321)
149 1vlv_A Otcase, ornithine carba 32.8 61 0.0021 24.5 4.6 40 3-43 205-244 (325)
150 1duv_G Octase-1, ornithine tra 32.3 71 0.0024 24.2 4.9 40 3-43 193-232 (333)
151 2i3b_A HCR-ntpase, human cance 32.0 24 0.00083 24.0 2.1 37 6-43 123-169 (189)
152 3hjh_A Transcription-repair-co 31.9 28 0.00097 27.6 2.7 29 11-39 31-59 (483)
153 3d4i_A STS-2 protein; PGM, 2H- 31.6 44 0.0015 23.5 3.5 27 7-33 179-208 (273)
154 2a6p_A Possible phosphoglycera 31.6 40 0.0014 22.9 3.2 29 7-35 131-160 (208)
155 1ni3_A YCHF GTPase, YCHF GTP-b 30.5 2.3 7.9E-05 33.0 -3.8 31 18-50 173-206 (392)
156 1exn_A 5'-exonuclease, 5'-nucl 30.3 86 0.0029 23.2 5.0 38 6-43 130-167 (290)
157 1pvv_A Otcase, ornithine carba 30.0 63 0.0022 24.2 4.3 40 3-43 192-231 (315)
158 1zq6_A Otcase, ornithine carba 29.9 70 0.0024 24.6 4.5 38 5-43 236-273 (359)
159 3c7t_A Ecdysteroid-phosphate p 29.8 43 0.0015 23.5 3.2 29 7-35 169-200 (263)
160 1jeo_A MJ1247, hypothetical pr 29.8 47 0.0016 21.6 3.2 37 6-44 97-134 (180)
161 3tpf_A Otcase, ornithine carba 29.3 76 0.0026 23.7 4.6 40 3-43 183-222 (307)
162 4ep1_A Otcase, ornithine carba 29.1 60 0.0021 24.8 4.0 40 3-43 216-255 (340)
163 2i6u_A Otcase, ornithine carba 29.0 61 0.0021 24.2 4.0 40 3-43 186-225 (307)
164 1dxh_A Ornithine carbamoyltran 28.9 67 0.0023 24.4 4.3 40 3-43 193-232 (335)
165 1u94_A RECA protein, recombina 27.5 56 0.0019 24.6 3.6 36 8-43 179-230 (356)
166 3q98_A Transcarbamylase; rossm 26.9 77 0.0026 24.7 4.3 38 3-41 235-272 (399)
167 2x4i_A CAG38848, uncharacteriz 26.5 52 0.0018 21.4 2.8 29 34-62 72-101 (114)
168 2i4r_A V-type ATP synthase sub 26.5 65 0.0022 20.1 3.2 25 4-28 38-62 (102)
169 3gp3_A 2,3-bisphosphoglycerate 26.2 48 0.0016 23.1 2.8 30 6-35 166-198 (257)
170 1fzt_A Phosphoglycerate mutase 26.0 42 0.0014 22.7 2.5 28 7-34 140-170 (211)
171 3mbk_A Ubiquitin-associated an 26.0 74 0.0025 22.2 3.9 31 6-36 169-202 (264)
172 3cvj_A Putative phosphoheptose 25.9 80 0.0027 21.8 4.0 37 6-43 123-171 (243)
173 1qhf_A Protein (phosphoglycera 25.6 58 0.002 22.4 3.2 17 18-34 172-188 (240)
174 2j9r_A Thymidine kinase; TK1, 25.2 1.3E+02 0.0044 21.2 5.0 37 7-44 117-163 (214)
175 2w37_A Ornithine carbamoyltran 25.2 76 0.0026 24.4 4.0 40 3-43 214-253 (359)
176 1jcn_A Inosine monophosphate d 24.8 0.94 3.2E-05 36.0 -7.1 45 16-61 57-103 (514)
177 2i2w_A Phosphoheptose isomeras 24.6 86 0.0029 21.2 3.9 37 6-43 146-183 (212)
178 4ar0_A Type IV pilus biogenesi 24.6 75 0.0026 20.5 3.4 67 8-93 44-110 (128)
179 1e58_A Phosphoglycerate mutase 24.4 62 0.0021 22.3 3.2 17 18-34 174-190 (249)
180 3gd5_A Otcase, ornithine carba 24.3 83 0.0028 23.7 4.0 40 3-43 194-233 (323)
181 3sho_A Transcriptional regulat 23.9 1.5E+02 0.0052 19.1 5.0 37 6-43 102-139 (187)
182 1m3s_A Hypothetical protein YC 23.6 1.3E+02 0.0044 19.5 4.5 37 6-43 94-131 (186)
183 1tk9_A Phosphoheptose isomeras 23.4 1.5E+02 0.0051 19.1 4.8 37 6-43 125-162 (188)
184 2hhj_A Bisphosphoglycerate mut 23.2 58 0.002 22.9 2.8 28 7-34 165-195 (267)
185 2qni_A AGR_C_517P, uncharacter 23.1 70 0.0024 22.0 3.2 29 7-35 141-171 (219)
186 3grf_A Ornithine carbamoyltran 23.1 1.4E+02 0.0049 22.4 5.1 38 3-41 201-240 (328)
187 2xhz_A KDSD, YRBH, arabinose 5 22.8 1.3E+02 0.0045 19.3 4.5 37 6-43 111-148 (183)
188 4emb_A 2,3-bisphosphoglycerate 22.2 62 0.0021 22.8 2.8 29 7-35 185-216 (274)
189 2d00_A V-type ATP synthase sub 22.1 71 0.0024 20.1 2.8 25 5-29 32-56 (109)
190 2yfk_A Aspartate/ornithine car 22.1 1.1E+02 0.0038 24.0 4.4 38 4-42 233-270 (418)
191 3kkk_A Phosphoglycerate mutase 21.9 65 0.0022 22.3 2.8 29 7-35 169-200 (258)
192 3mxo_A Serine/threonine-protei 21.5 73 0.0025 21.2 3.0 30 7-36 117-152 (202)
193 2qnr_A Septin-2, protein NEDD5 21.3 34 0.0012 24.9 1.3 22 9-30 147-168 (301)
194 3f3k_A Uncharacterized protein 20.9 84 0.0029 22.0 3.3 16 19-34 168-183 (265)
195 3aon_B V-type sodium ATPase su 20.7 1E+02 0.0034 19.6 3.3 24 4-28 30-53 (115)
196 1xp8_A RECA protein, recombina 20.2 90 0.0031 23.6 3.5 37 7-43 189-241 (366)
197 2xbl_A Phosphoheptose isomeras 20.2 1.5E+02 0.005 19.4 4.3 37 6-43 131-168 (198)
No 1
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.7e-21 Score=159.45 Aligned_cols=102 Identities=63% Similarity=1.019 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI 84 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i 84 (107)
.+++++|++++++.|+|||+||||++++..+|||+++|+|+++.....++|+++.+..+.+++.+++.+++++.+++|++
T Consensus 504 ~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 583 (608)
T 3j16_B 504 IICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRI 583 (608)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHHTCCBCCCTTTCCCCB
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhcCceeecCCCCCCceE
Confidence 57889999998767999999999999999999999999965555555589999999988999999999999999999999
Q ss_pred eeCCChhhHHHHHhCceeeccC
Q psy1687 85 NKNNSVKDCEQKRAGQYFFYEE 106 (107)
Q Consensus 85 ~~~~~~~~~~~k~~~~~~~~~~ 106 (107)
++.+|++|++||.+|.|||+++
T Consensus 584 ~~~~s~~d~~q~~~~~~~~~~~ 605 (608)
T 3j16_B 584 NKLDSQMDKEQKSSGNYFFLDN 605 (608)
T ss_dssp CCSSCSHHHHHHTTTCSCCCSS
T ss_pred eCCCccccHhHHhcCCeEeecc
Confidence 9999999999999999999875
No 2
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=6.6e-20 Score=151.02 Aligned_cols=100 Identities=48% Similarity=0.792 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI 84 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i 84 (107)
.+++++|++++++.|+|+|+||||++++..+|||+++|+|+++..+..++|+++.+..+.+++.+++++++++..++|++
T Consensus 508 ~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 587 (607)
T 3bk7_A 508 LAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRA 587 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHTTTTCCEEECTTTCCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhhHHHHHHhCCeEEEecCCCCccee
Confidence 56889999998777999999999999999999999999976666666689999998777788889899988888899999
Q ss_pred eeCCChhhHHHHHhCceeec
Q psy1687 85 NKNNSVKDCEQKRAGQYFFY 104 (107)
Q Consensus 85 ~~~~~~~~~~~k~~~~~~~~ 104 (107)
++.+|++|+|||.+|.|||+
T Consensus 588 ~~~~s~~d~~q~~~~~~~~~ 607 (607)
T 3bk7_A 588 NKEGSVKDREQKARGEYYYA 607 (607)
T ss_dssp CCTTCHHHHHHHHTTCCBCC
T ss_pred cCCcchhHHHHHhcCCcccC
Confidence 99999999999999999995
No 3
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.80 E-value=2.6e-19 Score=145.67 Aligned_cols=102 Identities=40% Similarity=0.662 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI 84 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i 84 (107)
.+++++|++++++.|+|||+||||++++..+||||++|+|+++..|..++|..+....+.+++.+++++++++..++|++
T Consensus 422 ~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (538)
T 3ozx_A 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRV 501 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHHTCEEEECTTTCCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhcceEEEecCCCCCeEE
Confidence 47889999998878999999999999999999999999977777788899999999889999999999999999999999
Q ss_pred eeCCChhhHHHHHhCceeeccC
Q psy1687 85 NKNNSVKDCEQKRAGQYFFYEE 106 (107)
Q Consensus 85 ~~~~~~~~~~~k~~~~~~~~~~ 106 (107)
++..|.+|++||++|.|||++.
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~ 523 (538)
T 3ozx_A 502 NKIGSYLDRVQKERGDYYSMVL 523 (538)
T ss_dssp ECTTSHHHHHHHHHTCSEEEEE
T ss_pred ecCccHHHHHHHhcCceeEeec
Confidence 9999999999999999999874
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=7.9e-19 Score=142.60 Aligned_cols=101 Identities=47% Similarity=0.786 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI 84 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i 84 (107)
.+++++|++++++.|.|||+||||++++..+|||+++|+++.+..+..++|+++.+..+.++..+++.+.+++..++|.+
T Consensus 438 ~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (538)
T 1yqt_A 438 LAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRA 517 (538)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHTTTCCEEECTTTCCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhhHHHHHhhcCeEEEecCCCCceee
Confidence 46889999997666999999999999999999999999965565555589999987655566677778777777788999
Q ss_pred eeCCChhhHHHHHhCceeecc
Q psy1687 85 NKNNSVKDCEQKRAGQYFFYE 105 (107)
Q Consensus 85 ~~~~~~~~~~~k~~~~~~~~~ 105 (107)
++.+|++|++||++|.|||.+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~ 538 (538)
T 1yqt_A 518 NKEGSVKDREQKEKGEYYYIA 538 (538)
T ss_dssp CCTTCHHHHHHHHHTCCBCCC
T ss_pred ccccchhhHHHHhhcCceecC
Confidence 999999999999999999974
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.05 E-value=5.3e-10 Score=83.51 Aligned_cols=53 Identities=23% Similarity=0.432 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.++|+|+||||++++..+|||+++|+ |++...| +++++.+
T Consensus 184 ~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g---~~~~~~~ 237 (266)
T 4g1u_C 184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG---TPEEVLN 237 (266)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEE---CHHHHCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEc---CHHHHhC
Confidence 478899999987767899999999999999999999998 8887774 6666543
No 6
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.90 E-value=1.6e-09 Score=84.82 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|+|||+||||++++..+|||+++|+ |+++.. |++++++.
T Consensus 200 ~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~---g~~~ev~~ 253 (366)
T 3tui_C 200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFS 253 (366)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC---CBHHHHHS
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 578999999988889999999999999999999999999 887776 57777654
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.87 E-value=2.3e-09 Score=84.29 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++.++.|+|+|+||||+++|..+||||++|+ |++... ++|+++.+
T Consensus 170 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~---g~~~~l~~ 223 (381)
T 3rlf_A 170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV---GKPLELYH 223 (381)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---eCHHHHHh
Confidence 468889999987779999999999999999999999999 877766 68888866
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.85 E-value=3.2e-09 Score=82.90 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++++.|+++.++.|+|+|+||||+++|..+||||++|+ |++... |+|+++.+
T Consensus 175 ~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~---g~~~el~~ 228 (359)
T 3fvq_A 175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT---ASPHELYR 228 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE---eCHHHHHh
Confidence 356677888877779999999999999999999999999 877766 58888776
No 9
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.78 E-value=7.4e-09 Score=80.35 Aligned_cols=53 Identities=25% Similarity=0.232 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 177 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~---g~~~~l~~ 230 (353)
T 1oxx_K 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV---GKPEDLYD 230 (353)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 468889999987779999999999999999999999999 776655 58888765
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.78 E-value=2.8e-09 Score=80.16 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++.|+|||+||||++++..+|||+++|+ |+++.. ++|+++.+
T Consensus 180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~---g~~~~~~~ 233 (275)
T 3gfo_A 180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ---GNPKEVFA 233 (275)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE---ECHHHHTH
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhc
Confidence 478899999974449999999999999999999999998 888877 47777654
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.78 E-value=7.9e-09 Score=80.60 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 170 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~---g~~~~~~~ 223 (362)
T 2it1_A 170 LEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV---GTPDEVYY 223 (362)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 468889999987779999999999999999999999999 776655 68888865
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.77 E-value=8.3e-09 Score=80.65 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 176 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~---g~~~~l~~ 229 (372)
T 1g29_1 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV---GSPDEVYD 229 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe---CCHHHHHh
Confidence 467889999987779999999999999999999999999 776655 68888865
No 13
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.77 E-value=9.9e-09 Score=79.62 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 164 ~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~---g~~~~~~~ 217 (348)
T 3d31_A 164 ENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV---GKPEEIFE 217 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE---ECHHHHHS
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 467889999987779999999999999999999999999 877665 57777764
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.77 E-value=8.8e-09 Score=80.25 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 170 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~---g~~~~l~~ 223 (359)
T 2yyz_A 170 MIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY---GTPDEVYD 223 (359)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 467889999987779999999999999999999999999 776655 68888765
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.76 E-value=9.5e-09 Score=80.39 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 178 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~---g~~~~l~~ 231 (372)
T 1v43_A 178 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI---GSPTEVYL 231 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 468889999987779999999999999999999999999 776655 68888865
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.76 E-value=9e-09 Score=80.13 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.++|++++++.|+|+|+||||+++|..+|||+++|+ |++... ++|+++.+
T Consensus 182 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~---g~~~~l~~ 235 (355)
T 1z47_A 182 RELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF---GTPEEVYE 235 (355)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence 467889999987779999999999999999999999999 776655 58888765
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.73 E-value=1.3e-08 Score=75.60 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++ |+|||+||||++++..+|||+++|+ |++... ++++++.+
T Consensus 190 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~ 242 (262)
T 1b0u_A 190 GEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE---GDPEQVFG 242 (262)
T ss_dssp HHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence 4688899999766 9999999999999999999999999 877766 46666643
No 18
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.73 E-value=1.3e-08 Score=74.84 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|++++++.|+|||+||||++++..+||++++|+ |++... ++++++.
T Consensus 163 ~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~ 215 (240)
T 2onk_A 163 GVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK---GKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHH
Confidence 468889999976669999999999999999999999999 877666 4666664
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.70 E-value=2.2e-08 Score=74.74 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++ |+|||+||||++++..+||++++|+ |++... ++++++.+
T Consensus 196 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~ 248 (263)
T 2olj_A 196 GEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE---GKPEDLFD 248 (263)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 4688899999766 9999999999999999999999999 877665 47777653
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.66 E-value=2.1e-08 Score=73.35 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.+++++|++++++.|+|||+||||++.+ .+|||+++|+ |++...+
T Consensus 182 ~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 182 EKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEc
Confidence 5788999999876799999999999965 7999999998 8776653
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.64 E-value=9e-08 Score=70.80 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|++++++.|+|+|+||||++++..+||++++|+ |+ ...| +++++.
T Consensus 165 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g---~~~~~~ 216 (253)
T 2nq2_C 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFG---ETRNIL 216 (253)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEE---EHHHHC
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecC---CHHHHh
Confidence 467889999876668999999999999999999999999 77 6554 555553
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.60 E-value=4.3e-08 Score=71.81 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|+++++ .|+|+|+||||++++..+||++++|+ |++... ++++++.
T Consensus 176 ~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~ 227 (240)
T 1ji0_A 176 SEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLE---GKASELL 227 (240)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE---EEHHHHH
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---cCHHHHh
Confidence 467889999876 59999999999999999999999999 777665 4666654
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.59 E-value=5.3e-08 Score=72.02 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
..++++|++++++ |+|+|+||||++++..+||++++|+ |++...| +++++.
T Consensus 170 ~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g---~~~~~~ 221 (249)
T 2qi9_C 170 SALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG---RREEVL 221 (249)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE---EHHHHS
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC---CHHHHh
Confidence 4678899998766 9999999999999999999999999 7776664 555553
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.58 E-value=2.9e-08 Score=73.38 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQN 57 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~ 57 (107)
.+++++|++++++ |+|||+||||++++..+|||+++|+ |++... +++++
T Consensus 190 ~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~ 239 (257)
T 1g6h_A 190 HDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE---GRGEE 239 (257)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEE---EESHH
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---eCHHH
Confidence 4688999999765 9999999999999999999999998 777666 46776
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.57 E-value=6.8e-08 Score=71.72 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++ |+|||+||||++++..+||++++|+ |++... ++++++.+
T Consensus 183 ~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~ 235 (256)
T 1vpl_A 183 REVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVET---GTVEELKE 235 (256)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEE---EEHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe---cCHHHHHH
Confidence 4678899998754 9999999999999999999999999 877766 46666654
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.51 E-value=5.6e-08 Score=72.26 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++ |+|||+||||++++..+||++++|+ |++... ++++++.+
T Consensus 175 ~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~ 227 (266)
T 2yz2_A 175 TDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFD---GTRMEFLE 227 (266)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEE---EEHHHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence 4678899998766 9999999999999999999999999 777665 46666654
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.50 E-value=1.5e-07 Score=68.22 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
..++++|++++++ |+|+|+||||++++ .+||++++|+ |++...|
T Consensus 177 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 177 KRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence 4678899999766 99999999999998 8999999998 7776654
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.47 E-value=1.3e-07 Score=70.57 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++.|+|||+||||++++.. ||++++|+ |++... ++++++.+
T Consensus 193 ~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~---g~~~~l~~ 245 (271)
T 2ixe_A 193 LRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQ---GTHLQLME 245 (271)
T ss_dssp HHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE---CCHHHHHh
Confidence 467888888865568999999999999875 99999999 777665 57787765
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.36 E-value=1.9e-07 Score=70.14 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCcEE--EEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTG--FVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tv--i~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~ 59 (107)
.+++++|++++++ |+|| |+||||++++..+||++++|+ |++...| +++++.
T Consensus 198 ~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g---~~~~~~ 251 (279)
T 2ihy_A 198 ESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG---AVEDIL 251 (279)
T ss_dssp HHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE---EHHHHC
T ss_pred HHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC---CHHHHh
Confidence 4688899999766 9999 999999999999999999999 8777664 555553
No 30
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.36 E-value=4.2e-07 Score=74.91 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++ |+|||+||||++++ .+|||+++| + |+++.. |+|+++.+
T Consensus 583 ~~i~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~---g~~~~~~~ 640 (670)
T 3ux8_A 583 ARLLDVLHRLVDN-GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAV---GTPEEVAE 640 (670)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEE---ECHHHHHT
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEe---cCHHHHHh
Confidence 5788999999765 99999999999987 569999999 5 777777 58888765
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.35 E-value=1.8e-07 Score=69.65 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++++ .|+|||+||||++++..+ |||+++|+ |++... ++++++..
T Consensus 201 ~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~ 254 (267)
T 2zu0_C 201 KVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS---GDFTLVKQ 254 (267)
T ss_dssp HHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE---ECTTHHHH
T ss_pred HHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE---cCHHHHhh
Confidence 467788888854 489999999999999887 99999998 877766 47776643
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.32 E-value=8.7e-07 Score=64.82 Aligned_cols=49 Identities=16% Similarity=0.328 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++++|++++ + |+|+|+||||++.+. .||++++|+ |++... ++++++.+
T Consensus 177 ~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~~~~ 226 (243)
T 1mv5_A 177 MVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITGS---GKHNELVA 226 (243)
T ss_dssp HHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECCC---SCHHHHHH
T ss_pred HHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEEe---CCHHHHHh
Confidence 5788888886 3 899999999999885 599999999 777665 57777765
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.31 E-value=7.1e-07 Score=68.02 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
..+++.|+++.+ ++|+|+||||++.+.. ||+|++|+ |+++.. |++++|.+.
T Consensus 227 ~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~---G~~~el~~~ 278 (306)
T 3nh6_A 227 RAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGCIVER---GRHEALLSR 278 (306)
T ss_dssp HHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTEEEEE---ECHHHHHHH
T ss_pred HHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCEEEEE---CCHHHHHhc
Confidence 357788888753 6899999999999977 99999999 877776 588888763
No 34
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.29 E-value=2.1e-06 Score=70.72 Aligned_cols=55 Identities=33% Similarity=0.473 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++.++ |+|||+||||++++..+|||+++|+|+++..|.+..|....+
T Consensus 265 ~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~ 319 (607)
T 3bk7_A 265 LKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN 319 (607)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHH
Confidence 4688899999764 999999999999999999999999987777764444444333
No 35
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.9e-06 Score=71.11 Aligned_cols=60 Identities=32% Similarity=0.496 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~ 65 (107)
.+++++|+++.++ |+|||+||||++++..+|||+++|.|.+...|.+..|....+..+.+
T Consensus 258 ~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~~~~~~~~ 317 (608)
T 3j16_B 258 LNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIF 317 (608)
T ss_dssp HHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhHHHHHHHh
Confidence 4678889988754 89999999999999999999999997777666555565555544433
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.23 E-value=7.3e-07 Score=65.61 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++. + |+|+|+||||++++. .||++++|+ |++... ++++++.+
T Consensus 182 ~~i~~~l~~~~-~-g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~l~~ 232 (247)
T 2ff7_A 182 HVIMRNMHKIC-K-GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ---GKHKELLS 232 (247)
T ss_dssp HHHHHHHHHHH-T-TSEEEEECSSGGGGT-TSSEEEEEETTEEEEE---ECHHHHHT
T ss_pred HHHHHHHHHHc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE---CCHHHHHh
Confidence 46788888884 3 899999999999986 499999999 877666 46766643
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.23 E-value=5.6e-07 Score=66.18 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCch
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQ 56 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~ 56 (107)
..++++|+++++ .|+|||+||||++++..+ ||++++|+ |++...| +++
T Consensus 180 ~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g---~~~ 229 (250)
T 2d2e_A 180 KVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG---GPE 229 (250)
T ss_dssp HHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEE---SHH
T ss_pred HHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEe---CHH
Confidence 467888888855 489999999999999998 59999999 8777664 555
No 38
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.22 E-value=2.2e-07 Score=65.65 Aligned_cols=39 Identities=10% Similarity=-0.106 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.++.+++++++++.|.|+|+||||+++|..+|||+++|.
T Consensus 164 ~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 164 RRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 357788888876678999999999999999999999984
No 39
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.19 E-value=2.1e-06 Score=70.70 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++ |+|||+||||++++. .|||+++| + |++... ++|+++.+
T Consensus 241 ~~l~~~l~~l~~~-g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~---g~~~~~~~ 298 (670)
T 3ux8_A 241 DRLIATLKSMRDL-GNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAA---GTPEEVMN 298 (670)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEE---ECHHHHHT
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEe---cCHHHHhc
Confidence 5788999999754 999999999999875 59999999 5 666666 47776654
No 40
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.17 E-value=1.6e-06 Score=74.54 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++++ |.|||+||||++++.. ||+|++| + |++++. |+|+++.+
T Consensus 845 ~~L~~lL~~L~~~-G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~---Gtpeel~~ 902 (916)
T 3pih_A 845 RKLVEVLHRLVDR-GNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVAT---GTPEEIAK 902 (916)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEE---ESHHHHHS
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEE---cCHHHHHh
Confidence 4678889998754 9999999999999854 9999999 5 666666 69999875
No 41
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.15 E-value=1.2e-06 Score=64.95 Aligned_cols=50 Identities=14% Similarity=0.300 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|+++. + ++|+|+||||++.+. .||++++|+ |++... ++++++..
T Consensus 192 ~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~ 242 (260)
T 2ghi_A 192 YLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEK---GTHKDLLK 242 (260)
T ss_dssp HHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEE---CCHHHHHh
Confidence 46778888884 3 799999999999985 599999999 777665 57777754
No 42
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.10 E-value=5.1e-06 Score=67.49 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCch
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQ 56 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~ 56 (107)
.++.++|+++. + |+|||+||||++++..+||++++|+|+.+..|....+.
T Consensus 175 ~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~ 224 (538)
T 3ozx_A 175 MNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSY 224 (538)
T ss_dssp HHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhh
Confidence 46788888885 3 89999999999999999999999996555555333443
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.08 E-value=1.3e-06 Score=64.99 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcC-EEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSD-RVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~d-riivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++++ . |+|+||||++++..+|| ++++|+ |++... ++++++.+
T Consensus 165 ~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~---g~~~~l~~ 215 (263)
T 2pjz_A 165 HVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGP---ISVSELLE 215 (263)
T ss_dssp HHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEE---EEHHHHHT
T ss_pred HHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEe---cCHHHHHh
Confidence 35666666663 2 99999999999999999 999999 777665 57777764
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.05 E-value=9.8e-06 Score=65.66 Aligned_cols=45 Identities=33% Similarity=0.466 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCccee
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g 50 (107)
.+++++|+++.+ .|+|||+||||++++..+|||+++|+++.+..|
T Consensus 195 ~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~ 239 (538)
T 1yqt_A 195 LNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239 (538)
T ss_dssp HHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCcccccc
Confidence 468889999976 499999999999999999999999985555444
No 45
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.04 E-value=4.6e-06 Score=71.21 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++ |.|||+||||++++ .+|||+++| + |+++.. ++|+++.+
T Consensus 770 ~~l~~lL~~L~~~-G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~---g~~~el~~ 827 (842)
T 2vf7_A 770 ERLQRQLVKLVDA-GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQ---GTPAEVAQ 827 (842)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEE---ECHHHHTT
T ss_pred HHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEE---cCHHHHHh
Confidence 5688889999754 99999999999999 789999999 4 666665 57777654
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.01 E-value=6.4e-06 Score=67.23 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.+.|+++. .|+|+|+||||++.+.. ||+|++|+ |+++.. |+++++.+
T Consensus 528 ~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~---g~~~~l~~ 578 (598)
T 3qf4_B 528 KSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEM---GKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSEEEC---SCHHHHHH
T ss_pred HHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE---CCHHHHHh
Confidence 35677888874 38999999999999865 99999999 877766 68888876
No 47
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.01 E-value=5.5e-06 Score=67.56 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.++++.|+++. .|+|+|+||||++.+. .||||++|+ |+++.. |++++|.+.
T Consensus 516 ~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~---g~~~el~~~ 567 (587)
T 3qf4_A 516 KRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKVAGF---GTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEE---ECHHHHHHH
T ss_pred HHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEE---CCHHHHHhC
Confidence 35677777763 4899999999999985 899999999 877766 589988763
No 48
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.98 E-value=6.1e-06 Score=71.02 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++.++ |.|||+||||++++.. ||+|++| + |++++. |+|+++.+
T Consensus 503 ~~l~~~L~~L~~~-G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~---G~~~e~~~ 560 (916)
T 3pih_A 503 ERLIKTLKKLRDL-GNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQ---GTVDELLK 560 (916)
T ss_dssp HHHHHHHHHTTTT-TCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEe---echhhhhc
Confidence 5788999999654 9999999999999865 9999999 5 656666 57877754
No 49
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.95 E-value=9.5e-06 Score=65.87 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.+.|+++. .|+|+|+||||++.+. .||++++|+ |++... |+++++.+
T Consensus 517 ~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~ 567 (582)
T 3b5x_A 517 RAIQAALDELQ--KNKTVLVIAHRLSTIE-QADEILVVDEGEIIER---GRHADLLA 567 (582)
T ss_pred HHHHHHHHHHc--CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE---CCHHHHHh
Confidence 35677888774 3899999999999986 699999999 877665 68888765
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.95 E-value=8.4e-06 Score=66.33 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.+.|+++.+ |+|+|+||||++.+. .||++++|+ |++... |+++++.+
T Consensus 520 ~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~ 570 (595)
T 2yl4_A 520 YLVQEALDRLMD--GRTVLVIAHRLSTIK-NANMVAVLDQGKITEY---GKHEELLS 570 (595)
T ss_dssp HHHHHHHHHHHT--TSEEEEECCCHHHHH-HSSEEEEEETTEEEEE---ECSCC---
T ss_pred HHHHHHHHHHhc--CCEEEEEecCHHHHH-cCCEEEEEECCEEEEE---CCHHHHHh
Confidence 457788888754 799999999999985 599999999 777665 57777754
No 51
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.93 E-value=1.2e-05 Score=69.71 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|+++++ .|.|||+||||++++ .+|||+++| + |+++.. ++|+++.+
T Consensus 885 ~~l~~lL~~L~~-~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~---g~~~el~~ 942 (972)
T 2r6f_A 885 ARLLDVLHRLVD-NGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAV---GTPEEVAE 942 (972)
T ss_dssp HHHHHHHHHHHH-TTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEE---ESHHHHHT
T ss_pred HHHHHHHHHHHh-CCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEe---cCHHHHHh
Confidence 468888999875 499999999999997 589999999 4 666665 58887764
No 52
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.91 E-value=4e-06 Score=65.84 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.++.++|+++. .++|+|+||||++ +...||||++|+ |++... ++|+++.+.
T Consensus 192 ~~l~~~l~~~~--~~~tvi~vtHd~e-~~~~aDri~vl~~G~i~~~---g~~~el~~~ 243 (390)
T 3gd7_A 192 QIIRRTLKQAF--ADCTVILCEARIE-AMLECDQFLVIEENKVRQY---DSILELYHY 243 (390)
T ss_dssp HHHHHHHHTTT--TTSCEEEECSSSG-GGTTCSEEEEEETTEEEEE---SSHHHHHHC
T ss_pred HHHHHHHHHHh--CCCEEEEEEcCHH-HHHhCCEEEEEECCEEEEE---CCHHHHHhC
Confidence 35666676653 4799999999986 456799999999 776655 799998763
No 53
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.88 E-value=9e-06 Score=66.02 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.++.+.|+++.+ |+|+|+||||++.+. .||++++|+ |++... |+++++.+
T Consensus 517 ~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~ 567 (582)
T 3b60_A 517 RAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVEDGIIVER---GTHSELLA 567 (582)
T ss_dssp HHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHhC--CCEEEEEeccHHHHH-hCCEEEEEECCEEEEe---cCHHHHHH
Confidence 357788888753 899999999999885 699999999 777665 58888865
No 54
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.86 E-value=1.7e-05 Score=68.89 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
.+++++|++++++ |.|||+||||++++ ..|||+++| + |+++.. ++|+++.+
T Consensus 903 ~~l~~lL~~L~~~-G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~---G~~~el~~ 960 (993)
T 2ygr_A 903 RKLLNVINGLVDK-GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQ---GTPEDVAA 960 (993)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEe---cCHHHHHh
Confidence 4678888888754 99999999999997 689999999 3 655555 58888765
No 55
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.86 E-value=1.1e-05 Score=62.28 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS 47 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~ 47 (107)
..++++|+++++ .|.|||+||||+++ ...||++++|+ |+++
T Consensus 322 ~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 322 EKIASVLKELER-LNKVIVFITHDREF-SEAFDRKLRITGGVVV 363 (365)
T ss_dssp HHHHHHHHGGGG-SSSEEEEEESCHHH-HTTCSCEEEEETTEEC
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchHH-HHhCCEEEEEECCEEE
Confidence 467888888865 49999999999999 67899999998 6543
No 56
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.84 E-value=6e-06 Score=59.89 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=31.4
Q ss_pred CcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 19 KKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 19 ~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
|+|+|+||||++++. .||++++|+ |++... ++++++.+
T Consensus 180 ~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~~~~ 218 (229)
T 2pze_A 180 NKTRILVTSKMEHLK-KADKILILHEGSSYFY---GTFSELQN 218 (229)
T ss_dssp TSEEEEECCCHHHHH-HCSEEEEEETTEEEEE---ECHHHHHT
T ss_pred CCEEEEEcCChHHHH-hCCEEEEEECCEEEEE---CCHHHHHh
Confidence 789999999999986 599999999 777665 47776654
No 57
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.83 E-value=1e-05 Score=65.72 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
..+.+.|+++. .++|+|+||||++.+. .|||+++|+ |++... |+++++.+
T Consensus 514 ~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~---g~~~el~~ 564 (578)
T 4a82_A 514 SIIQEALDVLS--KDRTTLIVAHRLSTIT-HADKIVVIENGHIVET---GTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHT--TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred HHHHHHHHHHc--CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE---CCHHHHHh
Confidence 35667777774 3789999999999985 599999999 877766 58888876
No 58
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.79 E-value=5.3e-06 Score=60.52 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=32.5
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.|+|+|+||||++++. .||++++|+ |++... ++++++.+
T Consensus 178 ~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~~~~ 217 (237)
T 2cbz_A 178 KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEM---GSYQELLA 217 (237)
T ss_dssp TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEE---ECHHHHHH
T ss_pred CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEe---CCHHHHhh
Confidence 3899999999999975 799999999 777665 57777765
No 59
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.76 E-value=4.6e-05 Score=66.15 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++|.+ .|.|||+|+||++++. .||+|++| + |+++.. |+++++.+
T Consensus 560 ~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~---G~~~e~~~ 617 (993)
T 2ygr_A 560 RRLIETLTRLRD-LGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHS---GPYDELLR 617 (993)
T ss_dssp HHHHHHHHHHHH-TTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEE---ECHHHHHH
T ss_pred HHHHHHHHHHHH-cCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEe---eCHHHhhh
Confidence 467888888854 5999999999999865 79999999 4 666666 57777655
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.72 E-value=3.2e-05 Score=66.97 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++|. +.|.|||+|+||++++. .||+|++| + |++++. |+|+++.+
T Consensus 543 ~~L~~~L~~Lr-~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~---G~~~e~~~ 600 (972)
T 2r6f_A 543 DRLIATLKSMR-DLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAA---GTPEEVMN 600 (972)
T ss_dssp HHHHHHHHHHH-TTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEE---ECTTTTTT
T ss_pred HHHHHHHHHHH-hCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEe---cCHHHHHh
Confidence 56888899995 46999999999999875 79999999 4 666666 46666543
No 61
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.67 E-value=3.8e-06 Score=60.75 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSP 46 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~ 46 (107)
.+++++|++++++ |+|||+||||++++..+||+++++.+++
T Consensus 170 ~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 170 HKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp HHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 5688899998755 8999999999999999999999887643
No 62
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.64 E-value=5.5e-05 Score=53.45 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHH---------Hhhc-CEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMA---------TYLS-DRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a---------~~~~-driivl~ 43 (107)
.+.++++.+.+ .|+|+|+|||+++.+ ..+| |++++|+
T Consensus 160 ~l~~l~~~l~~-~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 160 VLLKLNTILLE-MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHHH-HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHH-CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 36777777754 499999999999999 6888 9999997
No 63
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.58 E-value=4.8e-05 Score=57.30 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=32.4
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
.|+|||+||||++++. .||++++|+ |++... ++++++.+
T Consensus 208 ~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~ 247 (290)
T 2bbs_A 208 ANKTRILVTSKMEHLK-KADKILILHEGSSYFY---GTFSELQN 247 (290)
T ss_dssp TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEE---ECHHHHHH
T ss_pred CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEe---CCHHHHhh
Confidence 3899999999999985 599999999 777665 57777754
No 64
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.55 E-value=3.2e-05 Score=68.21 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+.+.|+++. .|+|+|+||||++.+. .||||++|+ |++... |+|++|.+.
T Consensus 1209 ~i~~~l~~~~--~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~---g~~~~l~~~ 1259 (1284)
T 3g5u_A 1209 VVQEALDKAR--EGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEH---GTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHHS--SSSCEEEECSCTTGGG-SCSEEEEEETBEEEEE---ECHHHHHHS
T ss_pred HHHHHHHHhC--CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE---CCHHHHHhC
Confidence 5667776642 4899999999999985 599999999 877766 699998763
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.55 E-value=0.0001 Score=62.94 Aligned_cols=51 Identities=24% Similarity=0.323 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~ 60 (107)
..++++|++|.+ .|.|||+|+||++++ ..||+|++| . |+++.. ++|+++.+
T Consensus 418 ~~L~~~l~~L~~-~G~TVIvVeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~---g~~~~~~~ 475 (842)
T 2vf7_A 418 EALLSALENLKR-GGNSLFVVEHDLDVI-RRADWLVDVGPEAGEKGGEILYS---GPPEGLKH 475 (842)
T ss_dssp HHHHHHHHHHHT-TTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEE---ECGGGGGG
T ss_pred HHHHHHHHHHHH-cCCEEEEEcCCHHHH-HhCCEEEEeCCCcccCCCEEEEe---cCHHHHHh
Confidence 567888889865 599999999999976 579999999 4 555555 56766654
No 66
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.53 E-value=0.00011 Score=54.18 Aligned_cols=41 Identities=22% Similarity=0.151 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCH--H--------------------HHHhhcCEEEEec-CC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDF--I--------------------MATYLSDRVIVFE-GS 45 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl--~--------------------~a~~~~driivl~-g~ 45 (107)
.++++.|++++++.|+|||++||+. + .+..+||+|++|. |+
T Consensus 173 ~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 4688889999888899999999994 6 7888999999998 54
No 67
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.53 E-value=0.00013 Score=50.59 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCH--------HHHHhhcCEEEEecC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDF--------IMATYLSDRVIVFEG 44 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl--------~~a~~~~driivl~g 44 (107)
..++++.|++++++.|.|+|+++|+. ..+..+||++++|+.
T Consensus 143 ~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 143 ARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 36788899999887899999999999 568999999999983
No 68
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.53 E-value=0.00014 Score=55.76 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe----c-CCCcce
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF----E-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl----~-g~~~~~ 49 (107)
..+.++|+++. .|.|||+||||++++ .+||++++| + |+....
T Consensus 334 ~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 334 IAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp HHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEEEEeccCCceEEE
Confidence 46778888886 389999999999887 579999999 6 654443
No 69
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.50 E-value=9.8e-05 Score=50.55 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|+++.++ |.|+|+||||+ .+..+||++++|+
T Consensus 100 ~~l~~~l~~~~~~-~~tiiivsH~~-~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 100 RKLITIMERYLKK-IPQVILVSHDE-ELKDAADHVIRIS 136 (148)
T ss_dssp HHHHHHHHHTGGG-SSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHcc-CCEEEEEEChH-HHHHhCCEEEEEE
Confidence 4567788887654 89999999999 4678999999996
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.45 E-value=0.00017 Score=63.69 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG 61 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~ 61 (107)
.+.+.++++. .|+|+|+|||+++.+.. ||+|++|+ |+++.. |++++|.+.
T Consensus 564 ~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~---g~~~~l~~~ 614 (1284)
T 3g5u_A 564 VVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQ---GNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCE---ECHHHHHHT
T ss_pred HHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE---CCHHHHHhC
Confidence 3555666553 48999999999999966 99999999 888776 588888763
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.41 E-value=0.00019 Score=62.23 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc-ceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS-ISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~-~~g~v~tp~~L~~ 60 (107)
.+.++|++ .|.|+|+||||++++..+||++++|+ |++. .. |+++++.+
T Consensus 586 ~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~---G~~~e~~~ 635 (986)
T 2iw3_A 586 WLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYK---GNFTEFVK 635 (986)
T ss_dssp HHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEE---SCHHHHHH
T ss_pred HHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCC---CCHHHHHh
Confidence 34445544 58999999999999999999999999 6654 34 56666653
No 72
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.24 E-value=0.00039 Score=48.41 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeC----CHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEH----DFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTH----Dl~~a~~~~driivl~ 43 (107)
.++++.|++++++.|+|||+||| +-..+..+||++++|+
T Consensus 156 ~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~ 198 (231)
T 4a74_A 156 AKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLR 198 (231)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence 36888888888888999999999 5555999999999998
No 73
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.19 E-value=0.00027 Score=56.56 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHH---------HhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMA---------TYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a---------~~~~driivl~ 43 (107)
.+++++++++++ .|+|+|++|||++++ ..+||++++|+
T Consensus 162 ~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~ 208 (525)
T 1tf7_A 162 RELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 208 (525)
T ss_dssp HHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEE
Confidence 468888988876 499999999999984 67799999997
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.19 E-value=0.00033 Score=60.79 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=28.4
Q ss_pred hcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 17 HAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 17 ~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
+.+.|||+||||++++..+||++++|+ |++...|
T Consensus 946 ~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G 980 (986)
T 2iw3_A 946 EFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980 (986)
T ss_dssp SCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC--
T ss_pred HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 346799999999999999999999998 7776554
No 75
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.19 E-value=0.00048 Score=55.03 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|+++++ |.|||+||||++++. +||++++|.
T Consensus 436 ~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~~~ 471 (517)
T 4ad8_A 436 IAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYKVE 471 (517)
T ss_dssp HHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEEEE
T ss_pred HHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEEEe
Confidence 467888998864 799999999999886 699999997
No 76
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.99 E-value=0.00025 Score=62.71 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
|.+.|+++. .|+|+|+|+|.++.+ .-||||+||+ |+++.. |+|++|.+
T Consensus 1256 Iq~~l~~~~--~~~TvI~IAHRLsTi-~~aD~I~Vld~G~IvE~---Gth~eLl~ 1304 (1321)
T 4f4c_A 1256 VQEALDRAR--EGRTCIVIAHRLNTV-MNADCIAVVSNGTIIEK---GTHTQLMS 1304 (1321)
T ss_dssp HHHHHTTTS--SSSEEEEECSSSSTT-TTCSEEEEESSSSEEEE---ECHHHHHH
T ss_pred HHHHHHHHc--CCCEEEEeccCHHHH-HhCCEEEEEECCEEEEE---CCHHHHHh
Confidence 445555443 489999999999987 5699999999 877766 69999987
No 77
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.95 E-value=0.00048 Score=60.96 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
+.+.+.|.++. .|+|+|+|||++..+ ..||+|++|+ |+++.. |+.++|.+
T Consensus 591 ~~i~~~l~~~~--~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive~---Gth~eL~~ 641 (1321)
T 4f4c_A 591 GIVQQALDKAA--KGRTTIIIAHRLSTI-RNADLIISCKNGQVVEV---GDHRALMA 641 (1321)
T ss_dssp HHHHHHHHHHH--TTSEEEEECSCTTTT-TTCSEEEEEETTEEEEE---ECHHHHHT
T ss_pred HHHHHHHHHHh--CCCEEEEEcccHHHH-HhCCEEEEeeCCeeecc---CCHHHHHH
Confidence 35667777765 489999999999976 6799999999 877776 58888875
No 78
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00092 Score=53.29 Aligned_cols=48 Identities=6% Similarity=-0.025 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCcEEEEEeCCHH------HHHhhcCE-----EEEec--CCCcceeecCCchhHHH
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFI------MATYLSDR-----VIVFE--GSPSISTLANAPQNLLN 60 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~------~a~~~~dr-----iivl~--g~~~~~g~v~tp~~L~~ 60 (107)
+.|.++.++.++|+|+||||.+ ++..+||| +++|+ |++. . ++++++.+
T Consensus 278 ~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~---g~~~~~~~ 338 (460)
T 2npi_A 278 AELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-A---VDDVYKRS 338 (460)
T ss_dssp HHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-C---CCHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-E---CCHHHHhh
Confidence 4566666666899999999988 88999999 99996 5555 5 57777743
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.74 E-value=0.0006 Score=46.63 Aligned_cols=30 Identities=7% Similarity=-0.165 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~ 35 (107)
.++.++|++++++ |.|+|+||||++++..+
T Consensus 136 ~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 136 QQMKKSIKGLQRE-GFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHHSTTHHHH-TCSEEEEECSHHHHHHE
T ss_pred HHhhhhhhhHHhc-CCcEEEEeCCHHHhhhh
Confidence 4556777777666 99999999999999763
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.71 E-value=0.0019 Score=48.89 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..++++|+++..+ |.|+|+||||.+ +..+||++++|.
T Consensus 291 ~~l~~~l~~~~~~-~~~vi~~sH~~~-~~~~~d~~~~l~ 327 (339)
T 3qkt_A 291 RKLITIMERYLKK-IPQVILVSHDEE-LKDAADHVIRIS 327 (339)
T ss_dssp HHHHHHHHHTGGG-SSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred HHHHHHHHHHHhc-CCEEEEEEChHH-HHHhCCEEEEEE
Confidence 4577888888654 789999999965 578999999997
No 81
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.55 E-value=0.0027 Score=43.77 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH-------------HHHhhcCEEEEecC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI-------------MATYLSDRVIVFEG 44 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-------------~a~~~~driivl~g 44 (107)
.++++.|++++++.|.|+|+++|... .+..+||++++|+.
T Consensus 132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 132 SRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 45667788888888999999999876 56789999999983
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.38 E-value=0.0013 Score=52.58 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCH----------HHHHhhcCEEEEec-CC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDF----------IMATYLSDRVIVFE-GS 45 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl----------~~a~~~~driivl~-g~ 45 (107)
.+.++++.+++ .|+|+|+|+||. +.+..+||++++|. |+
T Consensus 395 ~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 46677777754 599999999999 88889999999998 64
No 83
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.29 E-value=0.0061 Score=42.62 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHh-------------------hcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATY-------------------LSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~-------------------~~driivl~ 43 (107)
+.+++..|++++++.|.|||+++|....... +||.+++|+
T Consensus 149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~ 207 (243)
T 1n0w_A 149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 207 (243)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence 3467777888887789999999998766543 899999998
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.90 E-value=0.0041 Score=54.05 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCc
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPS 47 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~ 47 (107)
+..+|+.++++.|.++|++|||++++..+||++.+++|+..
T Consensus 890 ~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~ 930 (1022)
T 2o8b_B 890 ANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMA 930 (1022)
T ss_dssp HHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEE
Confidence 56788888765689999999999999999999988876544
No 85
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.37 E-value=0.017 Score=43.23 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEE--EEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRV--IVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~dri--ivl~ 43 (107)
..++++|+++. .|.|+|++||+.+ +..+||++ ++|.
T Consensus 260 ~~l~~~l~~~~--~~~~vi~~tH~~~-~~~~~d~~~~v~~~ 297 (322)
T 1e69_A 260 ERFKRLLKENS--KHTQFIVITHNKI-VMEAADLLHGVTMV 297 (322)
T ss_dssp HHHHHHHHHHT--TTSEEEEECCCTT-GGGGCSEEEEEEES
T ss_pred HHHHHHHHHhc--CCCeEEEEECCHH-HHhhCceEEEEEEe
Confidence 35677777773 3789999999964 56889987 7776
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.86 E-value=0.00029 Score=54.20 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHh-hcCc-----EEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687 5 HLTLQVIKRFIL-HAKK-----TGFVVEHDFIMATYLSDRVIVFE-GSPSIST 50 (107)
Q Consensus 5 ~~i~~ll~~l~~-~~~~-----tvi~vTHDl~~a~~~~driivl~-g~~~~~g 50 (107)
.++.++++++.+ +.|. ||+++|||++ ..+||+++++. |+++..+
T Consensus 198 ~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 198 SSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp HHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCH
T ss_pred HHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeC
Confidence 456677777754 4577 9999999999 78999999998 7776654
No 87
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.66 E-value=0.049 Score=42.56 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCH-------------------HHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDF-------------------IMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl-------------------~~a~~~~driivl~ 43 (107)
.++++.|++++++.|+|||+|+|.. .....++|.+++|.
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~ 361 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK 361 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence 5788999999988899999999992 23477889999998
No 88
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.23 E-value=0.057 Score=41.80 Aligned_cols=36 Identities=17% Similarity=-0.004 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.++++|+++.. .+.++|++||+... ...||+++++.
T Consensus 375 ~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~~~~~ 410 (430)
T 1w1w_A 375 RIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDALVGVY 410 (430)
T ss_dssp HHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEEEEEE
T ss_pred HHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEEEEEE
Confidence 46667776643 37899999999765 57899999997
No 89
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.12 E-value=0.049 Score=41.48 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.+.++|+++. .+.+||+||||.+ +..+||++++|+
T Consensus 325 ~l~~~l~~~~--~~~~vi~~th~~~-~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQMIIITHHRE-LEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCeEEEEEChHH-HHhhCCEEEEEE
Confidence 4566666653 2468999999987 578999999998
No 90
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.09 E-value=0.084 Score=36.67 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHH--------HHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIM--------ATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~--------a~~~~driivl~ 43 (107)
.+.+..+.+++++.|.|+++++|.... ...+||.++.|.
T Consensus 149 ~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~ 195 (247)
T 2dr3_A 149 RSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLD 195 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEE
Confidence 345566666767779999999998876 468899999997
No 91
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.95 E-value=0.0075 Score=45.77 Aligned_cols=51 Identities=8% Similarity=-0.016 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
++.++|+.+.. .+.|+++++|+++ +...|||+++|. |++...+ .+++.+.+
T Consensus 253 e~~~~l~~~~~-g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~~~~--~~~~~i~~ 304 (330)
T 2pt7_A 253 EAYDFYNVLCS-GHKGTLTTLHAGS-SEEAFIRLANMSSSNSAARN--IKFESLIE 304 (330)
T ss_dssp HHHHHHHHHHT-TCCCEEEEEECSS-HHHHHHHHHHHHHTSGGGTT--SCHHHHHH
T ss_pred HHHHHHHHHhc-CCCEEEEEEcccH-HHHHhhhheehhcCCcccCC--CCHHHHHH
Confidence 46677877753 2458999999999 889999999998 7543222 44444444
No 92
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=93.76 E-value=0.1 Score=36.17 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+.++|+++.. +.++|+|||+... ..+||+++.+.
T Consensus 105 ~~~~~~l~~~~~--~~~~ivith~~~~-~~~ad~i~~v~ 140 (173)
T 3kta_B 105 KRVADLIKESSK--ESQFIVITLRDVM-MANADKIIGVS 140 (173)
T ss_dssp HHHHHHHHHHTT--TSEEEEECSCHHH-HTTCSEEEEEE
T ss_pred HHHHHHHHHhcc--CCEEEEEEecHHH-HHhCCEEEEEE
Confidence 356777777753 4689999999765 57899999876
No 93
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.67 E-value=0.027 Score=43.51 Aligned_cols=42 Identities=5% Similarity=-0.134 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL 58 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L 58 (107)
.++++|+++ +.|+|++||+ +. +||++++|+ |++... ++|+++
T Consensus 312 ~l~~~l~~~----~qt~i~~th~-~~---~~~~i~~l~~G~i~~~---g~~~~~ 354 (359)
T 2o5v_A 312 YLLDLAASV----PQAIVTGTEL-AP---GAALTLRAQAGRFTPV---ADEEMQ 354 (359)
T ss_dssp HHHHHHHHS----SEEEEEESSC-CT---TCSEEEEEETTEEEEC---CCTTTS
T ss_pred HHHHHHHhc----CcEEEEEEec-cc---cCCEEEEEECCEEEec---CCHHHH
Confidence 344555444 3799999994 44 999999999 776655 466654
No 94
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.48 E-value=0.00091 Score=52.98 Aligned_cols=43 Identities=14% Similarity=0.007 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHh---hcCc-----EEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFIL---HAKK-----TGFVVEHDFIMATYLSDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~~---~~~~-----tvi~vTHDl~~a~~~~driivl~-g~~~~~ 49 (107)
.++.+++.++++ +.|+ ||+++|||++ ..+||++++|. |+++..
T Consensus 285 ~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 285 AKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEe
Confidence 456777877765 3374 9999999997 56777777776 554443
No 95
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.22 E-value=0.14 Score=38.26 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=39.4
Q ss_pred HHHHHHHHhhcCcEEEEEeC---------CHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 8 LQVIKRFILHAKKTGFVVEH---------DFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTH---------Dl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
...+++++++.|.|+|++|| .++.+..+++.|.++. |+....-+..+|+.+.+
T Consensus 236 ~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~ 298 (302)
T 3b9q_A 236 LPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVN 298 (302)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHH
Confidence 34556777667999999999 8889999999999998 76543334555655543
No 96
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.06 E-value=0.09 Score=41.12 Aligned_cols=40 Identities=10% Similarity=0.016 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeC---------C--HH--------HHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEH---------D--FI--------MATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTH---------D--l~--------~a~~~~driivl~ 43 (107)
+.++++.|++++++.|.+||+++| | +. .+...||.|++|.
T Consensus 339 i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~ 397 (454)
T 2r6a_A 339 VSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLY 397 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEe
Confidence 357888899999889999999999 3 32 5678999999998
No 97
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.03 E-value=0.025 Score=48.78 Aligned_cols=40 Identities=5% Similarity=-0.006 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
..+++.+.++.|.|+|++|||.+++ .+||++..+. |+...
T Consensus 764 ~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 764 WAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTA 804 (934)
T ss_dssp HHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEE
Confidence 4566777655689999999997766 6899876665 55443
No 98
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.37 E-value=0.011 Score=40.22 Aligned_cols=46 Identities=7% Similarity=-0.113 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCcEEEEEeCC-HHHHHhhcCEEEEecCCCcceeecCCchhH
Q psy1687 8 LQVIKRFILHAKKTGFVVEHD-FIMATYLSDRVIVFEGSPSISTLANAPQNL 58 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHD-l~~a~~~~driivl~g~~~~~g~v~tp~~L 58 (107)
.+.+..+. +.+.++|.+||. ++.+..+||+|+ -+|++...| +|+.|
T Consensus 136 ~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~-~~g~~~~~~---~~~~~ 182 (189)
T 2bdt_A 136 VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK-TNPRFIFCM---AGDPL 182 (189)
T ss_dssp HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH-HCGGGSCC---------
T ss_pred HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh-hCCcEEEee---cCCch
Confidence 44555553 346899999999 999999999999 338888774 55544
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.99 E-value=0.13 Score=37.26 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATY 34 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~ 34 (107)
.++++.|++++++.|.|||+++|+...+..
T Consensus 157 ~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~ 186 (279)
T 1nlf_A 157 AQVIGRMEAIAADTGCSIVFLHHASKGAAM 186 (279)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 567888999987779999999999988754
No 100
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.78 E-value=0.058 Score=38.27 Aligned_cols=27 Identities=11% Similarity=-0.014 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHh
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATY 34 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~ 34 (107)
.+++++|+++ + .|+|+| ||||++++..
T Consensus 137 ~~l~~~l~~l-~-~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 137 AQMKMFLTRL-G-FGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HHHHHHHTTB-C-TTCEEE-EEEC------
T ss_pred HHHHHHHHHh-c-CCCEEE-EECCHHHHhC
Confidence 4677888887 4 489999 9999998754
No 101
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.23 E-value=0.34 Score=37.34 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCcEEEEEeC---------CHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 8 LQVIKRFILHAKKTGFVVEH---------DFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTH---------Dl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
...+++++++.|.|+|++|| .++.+..++..|.++. |+..-.-+..+|+.+.+
T Consensus 293 ~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~ 355 (359)
T 2og2_A 293 LPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVN 355 (359)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHH
Confidence 34456777667999999999 6889999999999998 76554435556655543
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.66 E-value=0.26 Score=33.80 Aligned_cols=31 Identities=0% Similarity=-0.007 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCcEEEEEe---CCHHHHHhhcCE
Q psy1687 8 LQVIKRFILHAKKTGFVVE---HDFIMATYLSDR 38 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vT---HDl~~a~~~~dr 38 (107)
.+.+.++.++.+.|+|++| ||++++..+|+|
T Consensus 119 ~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 119 RDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 3445555455577788888 599999999998
No 103
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.21 E-value=0.045 Score=42.06 Aligned_cols=36 Identities=19% Similarity=0.011 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
+..+.+.+++. .|.|+++++|+.+.+ ..|||++.|.
T Consensus 209 e~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 209 ETIRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhc
Confidence 45666666654 499999999999987 7899999885
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.25 E-value=0.38 Score=36.49 Aligned_cols=45 Identities=13% Similarity=-0.062 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
+.+++..|++++++.|.|+|+++|+.......++...... |+...
T Consensus 261 ~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~ 306 (349)
T 1pzn_A 261 LAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILA 306 (349)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEe
Confidence 4567777888888789999999999876544333344444 44433
No 105
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=87.93 E-value=0.21 Score=43.02 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=23.7
Q ss_pred HHH-HHHHHHHhhcCcEEEEEeCCHHHHHhhcCE
Q psy1687 6 LTL-QVIKRFILHAKKTGFVVEHDFIMATYLSDR 38 (107)
Q Consensus 6 ~i~-~ll~~l~~~~~~tvi~vTHDl~~a~~~~dr 38 (107)
.+. .+++.++++.|.|+|++|||++++ .+||+
T Consensus 772 ~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 772 AIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 344 567777665699999999998876 45554
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=87.62 E-value=0.17 Score=42.89 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
..+++.+.++.|.++|++|||.+++ .+||++..+.
T Consensus 709 ~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~ 743 (800)
T 1wb9_A 709 WACAENLANKIKALTLFATHYFELT-QLPEKMEGVA 743 (800)
T ss_dssp HHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEE
T ss_pred HHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceE
Confidence 5677888664589999999999886 4888764443
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.83 E-value=3.7 Score=30.49 Aligned_cols=25 Identities=24% Similarity=0.089 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFI 30 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~ 30 (107)
++++.+++++++.|.|+|++||+-.
T Consensus 235 ~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 235 NGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5678888888777999999999843
No 108
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.00 E-value=0.22 Score=36.32 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
+..+++. + +.|.+|+++||+.+ +...|||+++|.
T Consensus 113 ~~~~l~~-~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 113 VETALRA-A-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHH-H-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred HHHHHHH-H-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 3344543 3 35899999999988 678999998886
No 109
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.69 E-value=7.5 Score=29.18 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC---------HHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD---------FIMATYLSDRVIVFE-GSPSISTLANAPQNLLN 60 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD---------l~~a~~~~driivl~-g~~~~~g~v~tp~~L~~ 60 (107)
++++.++.+.+..+.|+|++||. ++.+....-.|.++. |+.+..-+..+|+.+.+
T Consensus 256 ~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~ 320 (328)
T 3e70_C 256 AIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLE 320 (328)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHH
Confidence 56778888887789999999994 345666777888887 76654435566666654
No 110
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.31 E-value=1.1 Score=31.26 Aligned_cols=36 Identities=3% Similarity=0.066 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhh------cCcEEEEEeCCHHHHHhhcCEEEE
Q psy1687 6 LTLQVIKRFILH------AKKTGFVVEHDFIMATYLSDRVIV 41 (107)
Q Consensus 6 ~i~~ll~~l~~~------~~~tvi~vTHDl~~a~~~~driiv 41 (107)
++.+.|.++..+ .+.+.|+++||+++|...+++++.
T Consensus 165 ~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 165 QIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 344555544332 457788899999998888877754
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=67.49 E-value=5.5 Score=27.98 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=23.9
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHH
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGM 62 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~ 62 (107)
.++||+++|||++++.. |+ +.. + . ++++++.+-+
T Consensus 129 ~~~tI~i~th~~~~l~~---Rl--~~r--G-~---~~~e~i~~rl 162 (219)
T 1s96_A 129 HARSIFILPPSKIELDR---RL--RGR--G-Q---DSEEVIAKRM 162 (219)
T ss_dssp TCEEEEEECSSHHHHHH---HH--HTT--S-C---SCHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHH---HH--HHc--C-C---CCHHHHHHHH
Confidence 48999999999999876 43 331 1 2 5788877643
No 112
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=67.08 E-value=0.7 Score=34.79 Aligned_cols=42 Identities=7% Similarity=0.030 Sum_probs=29.6
Q ss_pred eCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCee
Q psy1687 26 EHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGIT 72 (107)
Q Consensus 26 THDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~ 72 (107)
||+++.+ ..||+| +|+ |+++.. |+++++...|..+.......
T Consensus 236 tH~~~~~-~~aD~i-vl~~G~iv~~---g~~~el~~~y~~l~~~~~~~ 278 (305)
T 2v9p_A 236 HSRVQTF-RFEQPC-TDESGEQPFN---ITDADWKSFFVRLWGRLDLI 278 (305)
T ss_dssp TTTEEEE-ECCCCC-CCC---CCCC---CCHHHHHHHHHHSTTTTTCC
T ss_pred hCCHHHH-HhCCEE-EEeCCEEEEe---CCHHHHHHHHHHHHHHcccC
Confidence 8998864 789999 998 888776 68999855566665555443
No 113
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.85 E-value=15 Score=28.03 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCC----------------HHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHD----------------FIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHD----------------l~~a~~~~driivl~ 43 (107)
.++++.|.+++++.|.|||++.|- -.....++|.++.+.
T Consensus 174 a~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~ 228 (356)
T 3hr8_A 174 SQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVR 228 (356)
T ss_dssp HHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEE
Confidence 356677788888889999999887 233568899998887
No 114
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.81 E-value=8.8 Score=29.93 Aligned_cols=41 Identities=5% Similarity=-0.072 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCC---HH----------------HHHhhcCEEEEecC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHD---FI----------------MATYLSDRVIVFEG 44 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHD---l~----------------~a~~~~driivl~g 44 (107)
+-++++.|+.++++.|.+||+++|= .+ -....||-|++|..
T Consensus 335 i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 335 ISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 3467788999999999999999981 11 26778999999974
No 115
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=63.80 E-value=0.95 Score=34.05 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL 59 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~ 59 (107)
.++.+.|+++.++.|.++++++|. +.+.++++++.+++. .... +++++|.
T Consensus 305 ~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~-~l~~---~~~~~~~ 354 (365)
T 1lw7_A 305 QQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK-VLNE---EEISELQ 354 (365)
T ss_dssp HHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH-HTSC---CCCSSCC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH-Hhcc---cchhHhh
Confidence 467788888777668999999976 677788988888764 2222 4555554
No 116
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=61.64 E-value=7.9 Score=32.60 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=17.9
Q ss_pred HHHHHHhhcCcEEEEEeCCHHHHHhhc
Q psy1687 10 VIKRFILHAKKTGFVVEHDFIMATYLS 36 (107)
Q Consensus 10 ll~~l~~~~~~tvi~vTHDl~~a~~~~ 36 (107)
++..+.+ .|.|+|++|||.+++. +|
T Consensus 680 i~~~L~~-~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 680 VAEALHE-RRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHH-HTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHh-CCCEEEEEeCCHHHHH-hh
Confidence 3444433 5899999999999874 54
No 117
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=61.37 E-value=7.6 Score=31.26 Aligned_cols=33 Identities=6% Similarity=-0.039 Sum_probs=24.6
Q ss_pred HHHHHHhhcCcEEEEEeCCHH-------HHHhhcCEEEEe
Q psy1687 10 VIKRFILHAKKTGFVVEHDFI-------MATYLSDRVIVF 42 (107)
Q Consensus 10 ll~~l~~~~~~tvi~vTHDl~-------~a~~~~driivl 42 (107)
.|.+..++.|+++|++||+.. ....+++||.+-
T Consensus 323 ~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 323 RLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp HHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred HHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 333444556999999999987 667888888764
No 118
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=60.39 E-value=8.2 Score=28.39 Aligned_cols=41 Identities=5% Similarity=-0.110 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCH-------------------HHHHhhcCEEEEecC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDF-------------------IMATYLSDRVIVFEG 44 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl-------------------~~a~~~~driivl~g 44 (107)
+.+++..|++++++.|.+|++++|-- ......||-|++|..
T Consensus 206 i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r 265 (315)
T 3bh0_A 206 ISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR 265 (315)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEec
Confidence 34677888999999999999998821 125678899999873
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=60.23 E-value=1.8 Score=28.70 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIM 31 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~ 31 (107)
.+.+++.+..+ .|+++|++||....
T Consensus 121 ~l~~ll~~~~~-~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 121 LISYIITYRYN-NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHHHHH-TTCEEEEECCCCSC
T ss_pred HHHHHHHHHHH-cCCCEEEEcCCChh
Confidence 34555655543 48899999987643
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=59.73 E-value=14 Score=27.80 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHHHHHH---HhhcCcEEEEEeCCHH----------------HHHhhcCEEEEec
Q psy1687 7 TLQVIKRF---ILHAKKTGFVVEHDFI----------------MATYLSDRVIVFE 43 (107)
Q Consensus 7 i~~ll~~l---~~~~~~tvi~vTHDl~----------------~a~~~~driivl~ 43 (107)
+.+.+++| +++.|.|||+++|-.. ....+||.++.+.
T Consensus 173 ~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lr 228 (349)
T 2zr9_A 173 MSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVR 228 (349)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEE
Confidence 34455555 4677999999999643 2467899888887
No 121
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=59.50 E-value=16 Score=24.71 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH----------HHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI----------MATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~----------~a~~~~driivl~ 43 (107)
+.+++..|++++++.|.++++++|--. ....+||-++.|.
T Consensus 157 ~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 157 IREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 346777888888889999999987432 1245788888876
No 122
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=56.97 E-value=17 Score=26.72 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI 30 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~ 30 (107)
+.+++..|++++++.|.+||++.|-..
T Consensus 233 ~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 233 LNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 345677788888888999999988653
No 123
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=56.27 E-value=0.58 Score=34.65 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI 48 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~ 48 (107)
++.+.|+++. .|++.+.|+++.+..++|++..+. |+...
T Consensus 26 ~l~~~l~~l~----~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~ 65 (295)
T 1ls1_A 26 DLKATLREIR----RALMDADVNLEVARDFVERVREEALGKQVL 65 (295)
T ss_dssp HHHHHHHHHH----HHHHHTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHHHcccccc
Confidence 3445565553 689999999999999999999887 76553
No 124
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=51.66 E-value=14 Score=27.53 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHH
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFI 30 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~ 30 (107)
+.+++..|++++++.|.+||+++|...
T Consensus 249 l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 249 LAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 456777788888888999999999754
No 125
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=50.71 E-value=12 Score=29.11 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHH----------------------HHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFI----------------------MATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~----------------------~a~~~~driivl~ 43 (107)
.+++..|++++++.|.+||+++|=-. .....||-|++|.
T Consensus 380 ~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 380 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence 46788889999999999999987321 2456789999987
No 126
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=50.47 E-value=22 Score=28.80 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH-hhcCcEEEEEeCCHHHH--------Hhh----cCEEEEec-CCCcce
Q psy1687 5 HLTLQVIKRFI-LHAKKTGFVVEHDFIMA--------TYL----SDRVIVFE-GSPSIS 49 (107)
Q Consensus 5 ~~i~~ll~~l~-~~~~~tvi~vTHDl~~a--------~~~----~driivl~-g~~~~~ 49 (107)
..+.++++++. +..+.+++++|||++.+ ..+ +..|+|++ +.....
T Consensus 171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 171 YKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCc
Confidence 46788888864 34578999999997633 333 35677777 444433
No 127
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=49.71 E-value=18 Score=26.25 Aligned_cols=40 Identities=5% Similarity=-0.086 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCC---HH-------------HHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHD---FI-------------MATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHD---l~-------------~a~~~~driivl~ 43 (107)
+.+++..|++++++.|.+||++.|- .+ .....+|.++.+.
T Consensus 234 ~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~ 289 (322)
T 2i1q_A 234 LGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVR 289 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEE
Confidence 3566777888888889999998772 21 2455677777776
No 128
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=49.14 E-value=12 Score=28.41 Aligned_cols=40 Identities=8% Similarity=-0.093 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHH-------------------HHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIM-------------------ATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~-------------------a~~~~driivl~ 43 (107)
+-++++-|+.++++.+.+||+++|==.. +.+.||-|+++.
T Consensus 181 i~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~ 239 (338)
T 4a1f_A 181 IAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLY 239 (338)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEe
Confidence 4578899999999999999999984222 234588888887
No 129
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=47.92 E-value=4 Score=31.90 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHh----hc----CcEEEEEeCCHHH--HHhhcCEEE-Eec
Q psy1687 5 HLTLQVIKRFIL----HA----KKTGFVVEHDFIM--ATYLSDRVI-VFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~----~~----~~tvi~vTHDl~~--a~~~~drii-vl~ 43 (107)
.+++++|+++.+ +. ..++++++|+++. +..+||++. .|.
T Consensus 203 ~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 203 EKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 457788888752 22 3578889999998 999999985 444
No 130
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=47.46 E-value=64 Score=24.60 Aligned_cols=39 Identities=5% Similarity=-0.055 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
|-.++.+..+.++.+.| .-+.+|||+++|..-||=|+..
T Consensus 219 p~~~~~~~~~~~~~~~g-~~v~~~~d~~eav~~aDvvyt~ 257 (358)
T 4h31_A 219 PDEELVAACQAIAKQTG-GKITLTENVAEGVQGCDFLYTD 257 (358)
T ss_dssp CCHHHHHHHHHHHHHHT-CEEEEESCHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHHHHHcC-CcceeccCHHHHhccCcEEEEE
Confidence 44577788888877656 4567899999999999976643
No 131
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=45.82 E-value=14 Score=28.45 Aligned_cols=40 Identities=8% Similarity=-0.058 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCC-------------HH------HHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHD-------------FI------MATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHD-------------l~------~a~~~~driivl~ 43 (107)
+.++++.|+.++++.|.+||+++|- +. .....||.+++|.
T Consensus 338 i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 338 IAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 3578888999999999999999981 11 2467899999997
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=44.40 E-value=51 Score=23.22 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC----------HHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD----------FIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD----------l~~a~~~~driivl~ 43 (107)
++.+.+++++.. |++||++-|+ ......+||+|.-|+
T Consensus 104 ~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 104 RICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp HHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred HHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 466777888764 9999999993 567778999999987
No 133
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.39 E-value=7.9 Score=28.52 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcC
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSD 37 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~d 37 (107)
.++.+.|++++ .+.||+++||+...+..+.|
T Consensus 167 ~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 167 EKLHERLARIN--ARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp HHHHHHHHHHC--SSSCEEECCSSCCCGGGGSC
T ss_pred HHHHHHHHHhC--CCCeEEEecccCCCHHHHhC
Confidence 56788888875 47899999997555554443
No 134
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=42.05 E-value=24 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.8
Q ss_pred CcEEEEEeCCHHHH--HhhcCEEEEecC
Q psy1687 19 KKTGFVVEHDFIMA--TYLSDRVIVFEG 44 (107)
Q Consensus 19 ~~tvi~vTHDl~~a--~~~~driivl~g 44 (107)
+.++|+.+|.+.+. ...||.+++++.
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 56888889998876 688999999973
No 135
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=41.99 E-value=32 Score=22.41 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHH
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMAT 33 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~ 33 (107)
.+.+.+.++.+..+.++++|+|..-...
T Consensus 87 r~~~~l~~~~~~~~~~vlvV~H~~~i~~ 114 (161)
T 1ujc_A 87 LVSAYLQALTNEGVASVLVISHLPLVGY 114 (161)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEeCHHHHHH
Confidence 4556666665434779999999866543
No 136
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=38.91 E-value=5.8 Score=26.70 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHH------------HhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMA------------TYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a------------~~~~driivl~g 44 (107)
.+.+.+++...+.|.|++.++|++..- ...||.|+.-+|
T Consensus 138 ~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 138 RFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 466677766555689999999985421 256787765444
No 137
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=36.66 E-value=13 Score=28.01 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
++.++|+.+... ..|++.++|+.+ +...+||+..+.
T Consensus 265 ~~~~~l~~l~~g-~~~~l~t~H~~~-~~~~~~Rl~~l~ 300 (361)
T 2gza_A 265 EAYDFINVAASG-HGGSITSCHAGS-CELTFERLALMV 300 (361)
T ss_dssp HHHHHHHHHHTT-CCSCEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCeEEEEECCCC-HHHHHHHHHHHH
Confidence 456777777532 457899999965 889999999998
No 138
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=36.54 E-value=30 Score=23.67 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhh
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~ 35 (107)
+.+.+.++.++...+|++|||---....+
T Consensus 129 ~~~~l~~l~~~~~~~vlvVsHg~~i~~l~ 157 (213)
T 3hjg_A 129 VSRAWSQIINDINDNLLIVTHGGVIRIIL 157 (213)
T ss_dssp HHHHHHHHHHHCCSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeCHHHHHHHH
Confidence 44566666655457999999987665443
No 139
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=35.64 E-value=84 Score=23.83 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
-.++++...+.+.+.|. -+-++||+++|..-+|-|+...
T Consensus 235 ~~~~~~~~~~~~~~~g~-~i~~~~d~~eav~~aDvvyt~r 273 (359)
T 3kzn_A 235 DERYMDWAAQNVAESGG-SLQVSHDIDSAYAGADVVYAKS 273 (359)
T ss_dssp CHHHHHHHHHHHHHHSC-EEEEECCHHHHHTTCSEEEEEC
T ss_pred CHHHHHHHHHHHHhhCC-CcccccCHHHHhcCCeEEEEEE
Confidence 34566666666555554 4678999999999999888765
No 140
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=35.50 E-value=4.3 Score=30.87 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
+..+++. + ..|.+++.++|+.+ +...+||++.|.
T Consensus 224 ~~~~l~~-~-~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VETALRA-A-ETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHH-H-TTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred HHHHHHH-H-hcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 3344543 3 35889999999955 888999987764
No 141
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=35.12 E-value=68 Score=21.88 Aligned_cols=37 Identities=5% Similarity=0.049 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCH----------HHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDF----------IMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl----------~~a~~~~driivl~ 43 (107)
++.+.++.++.. |+.||+.-+|. .....+||.|.-|+
T Consensus 96 ~~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 96 EIVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp HHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 346788888765 89999998864 67788999998776
No 142
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=34.92 E-value=38 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=18.4
Q ss_pred HHHHHHHHHhh----cCcEEEEEeCCHHHHHh
Q psy1687 7 TLQVIKRFILH----AKKTGFVVEHDFIMATY 34 (107)
Q Consensus 7 i~~ll~~l~~~----~~~tvi~vTHDl~~a~~ 34 (107)
+.+.+.++..+ .+.+|++|||-.-....
T Consensus 158 ~~~~l~~l~~~~~~~~~~~vlvVsHg~~i~~l 189 (237)
T 3r7a_A 158 IKAEIDKISEEAAKDGGGNVLVVVHGLLITTL 189 (237)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeEEEEcCHHHHHHH
Confidence 44555566443 47899999998655433
No 143
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=34.77 E-value=40 Score=21.53 Aligned_cols=30 Identities=0% Similarity=0.055 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHH
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMA 32 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a 32 (107)
|..++.+.++++.+..+..||++|-++-.-
T Consensus 32 ~~ee~~~~~~~l~~~~digIIlIte~ia~~ 61 (111)
T 2qai_A 32 SVERARNKLRELLERDDVGIILITERLAQR 61 (111)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCeEEEEEcHHHHhh
Confidence 457889999999877789999999765443
No 144
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=34.17 E-value=41 Score=22.71 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=18.1
Q ss_pred HHHHHHHHhh-cCcEEEEEeCCHHHHHh
Q psy1687 8 LQVIKRFILH-AKKTGFVVEHDFIMATY 34 (107)
Q Consensus 8 ~~ll~~l~~~-~~~tvi~vTHDl~~a~~ 34 (107)
.+.+.++.+. .+.+|++|||..-.-..
T Consensus 130 ~~~l~~l~~~~~~~~vlvVsHg~~i~~l 157 (207)
T 1h2e_A 130 LEAVQSIVDRHEGETVLIVTHGVVLKTL 157 (207)
T ss_dssp HHHHHHHHHHCTTCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEcCHHHHHHH
Confidence 4456666543 36799999999765443
No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=34.06 E-value=38 Score=21.89 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhcCcE-EEEEeCC
Q psy1687 5 HLTLQVIKRFILHAKKT-GFVVEHD 28 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~t-vi~vTHD 28 (107)
..+.+++.++.++ |++ +|++||.
T Consensus 101 ~~l~~li~~~~~~-g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNS-GKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred HHHHHHHHHHHHc-CCcEEEEECCC
Confidence 3566777777554 777 7777774
No 146
>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, STI archaea, crenarchaea, sulfolobus turreted icosa virus; 2.39A {Sulfolobus turreted icosahedral virus} SCOP: d.321.1.1
Probab=33.89 E-value=36 Score=22.49 Aligned_cols=29 Identities=3% Similarity=-0.028 Sum_probs=24.3
Q ss_pred hhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687 34 YLSDRVIVFE-GSPSISTLANAPQNLLNGM 62 (107)
Q Consensus 34 ~~~driivl~-g~~~~~g~v~tp~~L~~~~ 62 (107)
.-.|+++++. ++..-.|.+.+++++.+.|
T Consensus 76 ~~GD~alv~~L~~Rl~EG~vl~~eEi~kiy 105 (122)
T 2j85_A 76 NEGDEALIIMISQRLEEGKVLSDKEIKDMY 105 (122)
T ss_dssp CTTCEEEEEEESSCCCSSCCCCHHHHHHHH
T ss_pred cCCCEEEEEEecccCCCCccCCHHHHHHHH
Confidence 4689999998 7777789999999999875
No 147
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=33.44 E-value=83 Score=21.10 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~ 43 (107)
++.+.++.. ++.|..+|.+|-+. .....+||.++.+.
T Consensus 104 ~~i~~~~~a-k~~g~~vI~IT~~~~s~La~~ad~~l~~~ 141 (200)
T 1vim_A 104 SVVNISKKA-KDIGSKLVAVTGKRDSSLAKMADVVMVVK 141 (200)
T ss_dssp HHHHHHHHH-HHHTCEEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHHHHHHHH-HHCCCeEEEEECCCCChHHHhCCEEEEEC
Confidence 456666544 45588888888754 56778999999887
No 148
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=33.13 E-value=55 Score=24.68 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+.+++++++.|.. +-++||+++|..-+|-|+...
T Consensus 192 ~~~~~~~~~~~~a~~~G~~-~~~~~d~~eav~~aDvvy~d~ 231 (321)
T 1oth_A 192 PDASVTKLAEQYAKENGTK-LLLTNDPLEAAHGGNVLITDT 231 (321)
T ss_dssp CCHHHHHHHHHHHHHHTCC-EEEESCHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCCe-EEEEECHHHHhccCCEEEEec
Confidence 3346677777777766644 667899999999999776643
No 149
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=32.76 E-value=61 Score=24.48 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+.+++.+++.|. -+.++||+++|..-||-|+...
T Consensus 205 p~~~~~~~~~~~a~~~G~-~v~~~~d~~eav~~aDvvyt~~ 244 (325)
T 1vlv_A 205 PRSDVFKRCQEIVKETDG-SVSFTSNLEEALAGADVVYTDV 244 (325)
T ss_dssp CCHHHHHHHHHHHHHHCC-EEEEESCHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCC-eEEEEcCHHHHHccCCEEEecc
Confidence 334566777777777674 4677899999999999887754
No 150
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=32.31 E-value=71 Score=24.22 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+..++++++.|. -+.++||+++|..-||-|+...
T Consensus 193 p~~~~~~~~~~~a~~~G~-~v~~~~d~~eav~~aDvvytd~ 232 (333)
T 1duv_G 193 PEAALVTECRALAQQNGG-NITLTEDVAKGVEGADFIYTDV 232 (333)
T ss_dssp CCHHHHHHHHHHHHHTTC-EEEEESCHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCC-eEEEEECHHHHhCCCCEEEeCC
Confidence 334567777778777674 4677899999999999887754
No 151
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=31.97 E-value=24 Score=24.01 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcCcEEEE--Ee--CCH--HHHHhhcC----EEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFV--VE--HDF--IMATYLSD----RVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~--vT--HDl--~~a~~~~d----riivl~ 43 (107)
+.++.|.++.+. +.++|+ ++ ||. .++.++++ +++.++
T Consensus 123 ~~~~~l~~~l~~-~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 123 LFIQAVRQTLST-PGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHHHHHHHHC-SSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECC
T ss_pred HHHHHHHHHHhC-CCcEEEEEeecCCCCchHHHHHHeecCCcEEEEeC
Confidence 356777777654 445554 33 986 55555555 555554
No 152
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=31.86 E-value=28 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=21.1
Q ss_pred HHHHHhhcCcEEEEEeCCHHHHHhhcCEE
Q psy1687 11 IKRFILHAKKTGFVVEHDFIMATYLSDRV 39 (107)
Q Consensus 11 l~~l~~~~~~tvi~vTHDl~~a~~~~dri 39 (107)
+..++++.+..+++||||...|..+++.+
T Consensus 31 ~a~l~~~~~~p~lvv~~~~~~A~~l~~~l 59 (483)
T 3hjh_A 31 VAEIAERHAGPVVLIAPDMQNALRLHDEI 59 (483)
T ss_dssp HHHHHHHSSSCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEeCCHHHHHHHHHHH
Confidence 34455556788999999999998764433
No 153
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=31.57 E-value=44 Score=23.51 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=17.9
Q ss_pred HHHHHHHHHhh---cCcEEEEEeCCHHHHH
Q psy1687 7 TLQVIKRFILH---AKKTGFVVEHDFIMAT 33 (107)
Q Consensus 7 i~~ll~~l~~~---~~~tvi~vTHDl~~a~ 33 (107)
+.+.+.++.++ .+.+|++|+|..-.-.
T Consensus 179 ~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ 208 (273)
T 3d4i_A 179 CAVSMGQIINTCPQDMGITLIVSHSSALDS 208 (273)
T ss_dssp HHHHHHHHHTTSTTCCSEEEEEECTTHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEEechHHHHH
Confidence 34455665543 3679999999976654
No 154
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=31.56 E-value=40 Score=22.92 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=19.1
Q ss_pred HHHHHHHHHhh-cCcEEEEEeCCHHHHHhh
Q psy1687 7 TLQVIKRFILH-AKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 7 i~~ll~~l~~~-~~~tvi~vTHDl~~a~~~ 35 (107)
+.+.+.++.+. .+.++++|||..-....+
T Consensus 131 ~~~~l~~l~~~~~~~~vlvVsHg~~i~~l~ 160 (208)
T 2a6p_A 131 ADSAVALALEHMSSRDVLFVSHGHFSRAVI 160 (208)
T ss_dssp HHHHHHHHHHHTTTSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEEeCHHHHHHHH
Confidence 34555666543 467999999997765443
No 155
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=30.47 E-value=2.3 Score=33.03 Aligned_cols=31 Identities=10% Similarity=-0.049 Sum_probs=25.6
Q ss_pred cCcEEEEEeCCHHHHHhhcCEEE-Eec-C-CCccee
Q psy1687 18 AKKTGFVVEHDFIMATYLSDRVI-VFE-G-SPSIST 50 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~~~drii-vl~-g-~~~~~g 50 (107)
.|.|++ +|++..+..+||++. +|. | ++...|
T Consensus 173 ~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~ 206 (392)
T 1ni3_A 173 GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKG 206 (392)
T ss_dssp SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGS
T ss_pred cCCccc--cccHHHHHHHHHHHHHHhccCCceeecC
Confidence 366753 999999999999999 888 8 777765
No 156
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=30.27 E-value=86 Score=23.25 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
+++-.|.+-+.+.|..++++|.|-++....++++.+.+
T Consensus 130 DviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~ 167 (290)
T 1exn_A 130 DMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFS 167 (290)
T ss_dssp HHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEEEE
Confidence 34444444444457788999999999999999987777
No 157
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=30.05 E-value=63 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+.+++.+++.|.. +.++||+++|..-||-|+...
T Consensus 192 ~~~~~~~~~~~~a~~~g~~-~~~~~d~~eav~~aDvvy~~~ 231 (315)
T 1pvv_A 192 PDEKVIKWAEQNAAESGGS-FELLHDPVKAVKDADVIYTDV 231 (315)
T ss_dssp CCHHHHHHHHHHHHHHTCE-EEEESCHHHHTTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCCe-EEEEeCHHHHhCCCCEEEEcc
Confidence 3345667777777776744 567899999999999887754
No 158
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=29.88 E-value=70 Score=24.59 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
.++.+.+++++++.|. -+.++||+++|..-+|-|+...
T Consensus 236 ~~~~~~~~~~a~~~g~-~v~~~~d~~eav~~aDvVyt~~ 273 (359)
T 1zq6_A 236 ERYMDWAAQNVAESGG-SLQVSHDIDSAYAGADVVYAKS 273 (359)
T ss_dssp HHHHHHHHHHHHHHSC-EEEEECCHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHcCC-eEEEECCHHHHhcCCCEEEECC
Confidence 4667777777766664 4678999999999999776654
No 159
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=29.82 E-value=43 Score=23.45 Aligned_cols=29 Identities=3% Similarity=0.055 Sum_probs=19.0
Q ss_pred HHHHHHHHHhh---cCcEEEEEeCCHHHHHhh
Q psy1687 7 TLQVIKRFILH---AKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 7 i~~ll~~l~~~---~~~tvi~vTHDl~~a~~~ 35 (107)
+.+.+.++.++ .+.+|++|+|..-....+
T Consensus 169 v~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~ 200 (263)
T 3c7t_A 169 GEVAMQAAVNDTEKDGGNVIFIGHAITLDQMV 200 (263)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCHHHHHHHH
Confidence 34566666543 367999999997655443
No 160
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.81 E-value=47 Score=21.62 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEecC
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFEG 44 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~g 44 (107)
++.+.++.. ++.|.++|.+|.+. . ...+||.++.+..
T Consensus 97 ~~~~~~~~a-k~~g~~vi~IT~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 97 SVLTVAKKA-KNINNNIIAIVCECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp HHHHHHHHH-HTTCSCEEEEESSCCG-GGGGCSEEEECCC
T ss_pred HHHHHHHHH-HHCCCcEEEEeCCCCh-HHHhCCEEEEeCC
Confidence 456666544 55688888887754 4 7789999988863
No 161
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=29.33 E-value=76 Score=23.74 Aligned_cols=40 Identities=15% Similarity=-0.088 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+..++++++.|. -+.++||+++|..-||-|+...
T Consensus 183 ~~~~~~~~~~~~a~~~g~-~~~~~~d~~eav~~aDvvyt~~ 222 (307)
T 3tpf_A 183 ISPEIWEFAMKQALISGA-KISLGYDKFEALKDKDVVITDT 222 (307)
T ss_dssp CCHHHHHHHHHHHHHHTC-EEEEESCHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCC-eEEEEcCHHHHhcCCCEEEecC
Confidence 334566667777766564 4678999999999999887754
No 162
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=29.13 E-value=60 Score=24.76 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+.+++++++.|. -+.++||+++|..-||-|+...
T Consensus 216 ~~~~~~~~~~~~a~~~G~-~v~~~~d~~eav~~aDVvyt~~ 255 (340)
T 4ep1_A 216 PNEEIVKKALAIAKETGA-EIEILHNPELAVNEADFIYTDV 255 (340)
T ss_dssp CCHHHHHHHHHHHHHHCC-CEEEESCHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCC-eEEEECCHHHHhCCCCEEEecC
Confidence 344667777777766664 3567999999999999887754
No 163
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=28.99 E-value=61 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+.+++.+++.|.. +.++||+++|..-+|-|+...
T Consensus 186 ~~~~~~~~~~~~a~~~G~~-~~~~~d~~eav~~aDvvy~~~ 225 (307)
T 2i6u_A 186 PDPSVRAAAERRAQDTGAS-VTVTADAHAAAAGADVLVTDT 225 (307)
T ss_dssp CCHHHHHHHHHHHHHHTCC-EEEESCHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCCe-EEEEECHHHHhcCCCEEEecc
Confidence 3345667777777666743 677899999999999887754
No 164
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=28.93 E-value=67 Score=24.37 Aligned_cols=40 Identities=18% Similarity=0.016 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+..++++++.|.. +.+|||+++|..-+|-|+...
T Consensus 193 p~~~~~~~~~~~a~~~G~~-v~~~~d~~eav~~aDvvytd~ 232 (335)
T 1dxh_A 193 PHDEFVAQCKKFAEESGAK-LTLTEDPKEAVKGVDFVHTDV 232 (335)
T ss_dssp CCHHHHHHHHHHHHHHTCE-EEEESCHHHHTTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCCe-EEEEeCHHHHhCCCCEEEeCC
Confidence 3345667777777776744 677899999999999776643
No 165
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=27.53 E-value=56 Score=24.59 Aligned_cols=36 Identities=0% Similarity=0.031 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHH----------------HHHhhcCEEEEec
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFI----------------MATYLSDRVIVFE 43 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~----------------~a~~~~driivl~ 43 (107)
+..|..++++.|.+||++.|--. ....+||-++.+.
T Consensus 179 l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~ 230 (356)
T 1u94_A 179 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 230 (356)
T ss_dssp HHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEE
Confidence 34444446778999999988532 2356778777665
No 166
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=26.90 E-value=77 Score=24.67 Aligned_cols=38 Identities=16% Similarity=-0.045 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEE
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIV 41 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driiv 41 (107)
|.-++++..++++++.|. -+.+|||+++|..=||-|+.
T Consensus 235 ~~~~~~~~a~~~a~~~G~-~i~~~~d~~eav~~aDvVyt 272 (399)
T 3q98_A 235 LIPDVVEVAKNNAKASGG-SFRQVTSMEEAFKDADIVYP 272 (399)
T ss_dssp CCHHHHHHHHHHHHHHTC-EEEEESCHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEEcCHHHHhCCCCEEEe
Confidence 345666777777766664 46789999999999997765
No 167
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=26.48 E-value=52 Score=21.41 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=18.3
Q ss_pred hhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687 34 YLSDRVIVFE-GSPSISTLANAPQNLLNGM 62 (107)
Q Consensus 34 ~~~driivl~-g~~~~~g~v~tp~~L~~~~ 62 (107)
.-.|+++++. ++..-.|.+.+++++.+.|
T Consensus 72 ~~GD~alv~~L~~Rl~EG~vl~~eEi~k~~ 101 (114)
T 2x4i_A 72 EKEDKLYVVQISQRLEEGKILTLEEILKLY 101 (114)
T ss_dssp CTTCEEEEEEEC-------CCCHHHHHHHH
T ss_pred cCCCEEEEEEecccCCCCccCCHHHHHHHH
Confidence 3489999998 7677789999999998865
No 168
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=26.47 E-value=65 Score=20.14 Aligned_cols=25 Identities=0% Similarity=0.080 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHD 28 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHD 28 (107)
..++.+.++++.+..+..||++|-+
T Consensus 38 ~ee~~~~~~~l~~~~digIIlIte~ 62 (102)
T 2i4r_A 38 DEEIVKAVEDVLKRDDVGVVIMKQE 62 (102)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEGG
T ss_pred HHHHHHHHHHHhhCCCeEEEEEeHH
Confidence 3577888888887667888888865
No 169
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=26.22 E-value=48 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=19.4
Q ss_pred HHHHHHHHHHh---hcCcEEEEEeCCHHHHHhh
Q psy1687 6 LTLQVIKRFIL---HAKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 6 ~i~~ll~~l~~---~~~~tvi~vTHDl~~a~~~ 35 (107)
.+...+.++.. ..+.+|++|||---....+
T Consensus 166 Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll 198 (257)
T 3gp3_A 166 RVLPLWNESIAPAVKAGKQVLIAAHGNSLRALI 198 (257)
T ss_dssp HHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCcHHHHHHH
Confidence 34455555532 2578999999987765544
No 170
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=26.03 E-value=42 Score=22.66 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=17.7
Q ss_pred HHHHHHHHHh---hcCcEEEEEeCCHHHHHh
Q psy1687 7 TLQVIKRFIL---HAKKTGFVVEHDFIMATY 34 (107)
Q Consensus 7 i~~ll~~l~~---~~~~tvi~vTHDl~~a~~ 34 (107)
+.+.+.++.. ..+.+|++|||..-....
T Consensus 140 ~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l 170 (211)
T 1fzt_A 140 VLPYYKSTIVPHILKGEKVLIAAHGNSLRAL 170 (211)
T ss_dssp HHHHHHHHHTTHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCeEEEEeChHHHHHH
Confidence 4445555532 236789999998765443
No 171
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=25.95 E-value=74 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhh---cCcEEEEEeCCHHHHHhhc
Q psy1687 6 LTLQVIKRFILH---AKKTGFVVEHDFIMATYLS 36 (107)
Q Consensus 6 ~i~~ll~~l~~~---~~~tvi~vTHDl~~a~~~~ 36 (107)
.+...+.++.++ .+.+|++|||.--.-..++
T Consensus 169 R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~ 202 (264)
T 3mbk_A 169 RSFQVTKEIISECKSKGNNILIVAHASSLEACTC 202 (264)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEECTTHHHHTTT
T ss_pred HHHHHHHHHHHhccCCCCeEEEEecHHHHHHHHH
Confidence 344556666543 3689999999977765443
No 172
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=25.87 E-value=80 Score=21.81 Aligned_cols=37 Identities=5% Similarity=-0.131 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCHH------------HHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDFI------------MATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl~------------~a~~~~driivl~ 43 (107)
++.+.++.. ++.|.++|.+|-..+ ....+||-++...
T Consensus 123 ~~i~~~~~A-k~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~~~ 171 (243)
T 3cvj_A 123 VPVEMAIES-RNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDNG 171 (243)
T ss_dssp HHHHHHHHH-HHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEECC
T ss_pred HHHHHHHHH-HHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEECC
Confidence 456666544 556988899988765 5678999988876
No 173
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=25.58 E-value=58 Score=22.37 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=12.8
Q ss_pred cCcEEEEEeCCHHHHHh
Q psy1687 18 AKKTGFVVEHDFIMATY 34 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~ 34 (107)
.+.+|++|||-.-....
T Consensus 172 ~~~~vlvVsHg~~i~~l 188 (240)
T 1qhf_A 172 SGKTVMIAAHGNSLRGL 188 (240)
T ss_dssp TTCCEEEEECHHHHHHH
T ss_pred CCCEEEEEeCHHHHHHH
Confidence 46799999998765443
No 174
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=25.23 E-value=1.3e+02 Score=21.22 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCcEEEEEeC----------CHHHHHhhcCEEEEecC
Q psy1687 7 TLQVIKRFILHAKKTGFVVEH----------DFIMATYLSDRVIVFEG 44 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTH----------Dl~~a~~~~driivl~g 44 (107)
..+.++.++.. |+.||+.-+ -......+||.|.-|+.
T Consensus 117 ~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 117 IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeeee
Confidence 34788888665 999999988 67778899999999874
No 175
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=25.21 E-value=76 Score=24.38 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+.+++++++.|. -+.+|||+++|..-||-|+...
T Consensus 214 p~~~~~~~~~~~a~~~G~-~v~~~~d~~eav~~aDvvytd~ 253 (359)
T 2w37_A 214 PTEETQNIAKGFAEKSGA-KLVITDDLDEGLKGSNVVYTDV 253 (359)
T ss_dssp CCHHHHHHHHHHHHHHTC-CEEEESCHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCC-eEEEEeCHHHHhcCCCEEEEcc
Confidence 334566777777776674 3677899999999999776653
No 176
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=24.78 E-value=0.94 Score=35.96 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=31.1
Q ss_pred hhcCcEEEEEeCCHHHH--HhhcCEEEEecCCCcceeecCCchhHHHH
Q psy1687 16 LHAKKTGFVVEHDFIMA--TYLSDRVIVFEGSPSISTLANAPQNLLNG 61 (107)
Q Consensus 16 ~~~~~tvi~vTHDl~~a--~~~~driivl~g~~~~~g~v~tp~~L~~~ 61 (107)
+..++++.+++|+++.+ ..+++++..+.|-...+ .-++|+++.+.
T Consensus 57 ~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~-~~~t~e~~~~~ 103 (514)
T 1jcn_A 57 RKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIH-HNCTPEFQANE 103 (514)
T ss_dssp SSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEEC-CSSCHHHHHHH
T ss_pred CCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEe-cCCCHHHHHHH
Confidence 44567899999999998 88999988876421111 11578877653
No 177
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.63 E-value=86 Score=21.18 Aligned_cols=37 Identities=8% Similarity=-0.147 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~ 43 (107)
++.+.++.. ++.|.++|.+|-+- .....+||.++.+.
T Consensus 146 ~~i~~~~~a-k~~G~~vIaIT~~~~s~La~~aD~~l~~~ 183 (212)
T 2i2w_A 146 NVIKAIAAA-REKGMKVITLTGKDGGKMAGTADIEIRVP 183 (212)
T ss_dssp HHHHHHHHH-HHHTCEEEEEEETTCGGGTTCSSEEEEEC
T ss_pred HHHHHHHHH-HHCCCeEEEEECCCCCchHHhCCEEEEcC
Confidence 456666554 44588777777654 56678899888876
No 178
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=24.57 E-value=75 Score=20.51 Aligned_cols=67 Identities=6% Similarity=0.058 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCcceeeeC
Q psy1687 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINKN 87 (107)
Q Consensus 8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i~~~ 87 (107)
-+.|+.+++..|+.+|+-. + . +|++... .....+.++++.+++..+....... +..++.+.
T Consensus 44 ~~vl~~la~~tg~NiV~d~-~------V-------~G~VTl~---l~~v~~~~al~~iL~~~gl~~~~~g--nvi~I~p~ 104 (128)
T 4ar0_A 44 RTILQILAKESGMNIVASD-S------V-------NGKMTLS---LKDVPWDQALDLVMQARNLDMRQQG--NIVNIAPR 104 (128)
T ss_dssp HHHHHHHHHTTCCEEEECT-T------C-------CCEEEEE---EEEEEHHHHHHHHHHHHTEEEEEET--TEEEEEEH
T ss_pred HHHHHHHHHHHCCcEEEcC-C------C-------CceeeEe---ecCCCHHHHHHHHHHHcCceEEEEC--CEEEEECh
Confidence 3445555666788877621 1 1 2332221 2334556667778888888886644 44556554
Q ss_pred CChhhH
Q psy1687 88 NSVKDC 93 (107)
Q Consensus 88 ~~~~~~ 93 (107)
.....+
T Consensus 105 ~~~~~~ 110 (128)
T 4ar0_A 105 DELLAK 110 (128)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 179
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=24.39 E-value=62 Score=22.33 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=12.8
Q ss_pred cCcEEEEEeCCHHHHHh
Q psy1687 18 AKKTGFVVEHDFIMATY 34 (107)
Q Consensus 18 ~~~tvi~vTHDl~~a~~ 34 (107)
.+.+|++|||-.-.-..
T Consensus 174 ~~~~vlvVsHg~~i~~l 190 (249)
T 1e58_A 174 SGERVIIAAHGNSLRAL 190 (249)
T ss_dssp TTCCEEEEECHHHHHHH
T ss_pred CCCEEEEEcChHHHHHH
Confidence 46799999998765443
No 180
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=24.27 E-value=83 Score=23.74 Aligned_cols=40 Identities=8% Similarity=-0.152 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687 3 PLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE 43 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~ 43 (107)
|-.++.+..++++++.|. -+.++||+++|..-||-|+...
T Consensus 194 ~~~~~~~~~~~~a~~~g~-~v~~~~d~~eav~~aDvvyt~~ 233 (323)
T 3gd5_A 194 PDPAVSARASEIAGRTGA-EVQILRDPFEAARGAHILYTDV 233 (323)
T ss_dssp CCHHHHHHHHHHHHHHTC-CEEEESCHHHHHTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHcCC-eEEEECCHHHHhcCCCEEEEec
Confidence 345666777777665564 4568999999999999887764
No 181
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.93 E-value=1.5e+02 Score=19.12 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC-HHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD-FIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD-l~~a~~~~driivl~ 43 (107)
++.+.++.. ++.|.++|.+|.+ -.....+||.++.+.
T Consensus 102 ~~~~~~~~a-k~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 102 DTVAALAGA-AERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp HHHHHHHHH-HHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHHHHHHHH-HHCCCCEEEEeCCCCCcchhhCcEEEEec
Confidence 456666544 4568888888764 456778999999987
No 182
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.64 E-value=1.3e+02 Score=19.53 Aligned_cols=37 Identities=5% Similarity=-0.101 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC-HHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD-FIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD-l~~a~~~~driivl~ 43 (107)
++.+.++.. ++.|..+|.+|.+ -.....+||.++.+.
T Consensus 94 ~~~~~~~~a-k~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 131 (186)
T 1m3s_A 94 SLIHTAAKA-KSLHGIVAALTINPESSIGKQADLIIRMP 131 (186)
T ss_dssp HHHHHHHHH-HHTTCEEEEEESCTTSHHHHHCSEEEECS
T ss_pred HHHHHHHHH-HHCCCEEEEEECCCCCchHHhCCEEEEeC
Confidence 556666554 4568888888875 356678999988887
No 183
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=23.40 E-value=1.5e+02 Score=19.11 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC-HHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD-FIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD-l~~a~~~~driivl~ 43 (107)
++.+.++.. ++.|.++|.+|-+ -.....+||.++.+.
T Consensus 125 ~~~~~~~~a-k~~g~~vi~iT~~~~s~L~~~ad~~l~~~ 162 (188)
T 1tk9_A 125 NVLEALKKA-KELNMLCLGLSGKGGGMMNKLCDHNLVVP 162 (188)
T ss_dssp HHHHHHHHH-HHTTCEEEEEEEGGGTTHHHHCSEEEEES
T ss_pred HHHHHHHHH-HHCCCEEEEEeCCCCcchHHcCCEEEEeC
Confidence 455666544 4568877777764 456778999988876
No 184
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=23.23 E-value=58 Score=22.94 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=17.8
Q ss_pred HHHHHHH-HHhh--cCcEEEEEeCCHHHHHh
Q psy1687 7 TLQVIKR-FILH--AKKTGFVVEHDFIMATY 34 (107)
Q Consensus 7 i~~ll~~-l~~~--~~~tvi~vTHDl~~a~~ 34 (107)
+...+.+ +..+ .+.+|++|||-.-....
T Consensus 165 v~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l 195 (267)
T 2hhj_A 165 LLPYWNERIAPEVLRGKTILISAHGNSSRAL 195 (267)
T ss_dssp HHHHHHHHTHHHHHTTCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCEEEEEcCcHHHHHH
Confidence 3444555 4332 46899999998765544
No 185
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=23.09 E-value=70 Score=22.05 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhc--CcEEEEEeCCHHHHHhh
Q psy1687 7 TLQVIKRFILHA--KKTGFVVEHDFIMATYL 35 (107)
Q Consensus 7 i~~ll~~l~~~~--~~tvi~vTHDl~~a~~~ 35 (107)
+.+.+.++.++. +.+|++|||..-....+
T Consensus 141 v~~~l~~l~~~~~~~~~vlvVsHg~~i~~l~ 171 (219)
T 2qni_A 141 IVEAVKAVLDRHDARQPIAFVGHGGVGTLLK 171 (219)
T ss_dssp HHHHHHHHHHTCCTTSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCHHHHHHHH
Confidence 344566665432 25999999997655443
No 186
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=23.07 E-value=1.4e+02 Score=22.42 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHhh--cCcEEEEEeCCHHHHHhhcCEEEE
Q psy1687 3 PLHLTLQVIKRFILH--AKKTGFVVEHDFIMATYLSDRVIV 41 (107)
Q Consensus 3 ~~~~i~~ll~~l~~~--~~~tvi~vTHDl~~a~~~~driiv 41 (107)
|-.++.+.+++++++ .|. -+.++||+++|..-+|=|+.
T Consensus 201 p~~~~~~~~~~~~~~~~~g~-~v~~~~d~~eav~~aDvvyt 240 (328)
T 3grf_A 201 PIKEVIDECEEIIAKHGTGG-SIKIFHDCKKGCEGVDVVYT 240 (328)
T ss_dssp CCHHHHHHHHHHHHHHTCCC-EEEEESSHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHhhccCCC-eEEEEcCHHHHhcCCCEEEe
Confidence 444567777777655 453 46789999999999998875
No 187
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.81 E-value=1.3e+02 Score=19.34 Aligned_cols=37 Identities=5% Similarity=-0.085 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~ 43 (107)
++.+.++.. ++.|..+|.+|-+. .....+||.++.+.
T Consensus 111 ~~~~~~~~a-k~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 111 EITALIPVL-KRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp HHHHHHHHH-HTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred HHHHHHHHH-HHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 456666554 45687777777644 56778999998887
No 188
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=22.24 E-value=62 Score=22.83 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=18.3
Q ss_pred HHHHHHHHHh---hcCcEEEEEeCCHHHHHhh
Q psy1687 7 TLQVIKRFIL---HAKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 7 i~~ll~~l~~---~~~~tvi~vTHDl~~a~~~ 35 (107)
+...+.++.. ..+.+|++|||---....+
T Consensus 185 v~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll 216 (274)
T 4emb_A 185 VIPYWTDEIAKEVLEGKKVIVAAHGNSLRALV 216 (274)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCEEEEEeCHHHHHHHH
Confidence 3444555432 2578999999987665443
No 189
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=22.12 E-value=71 Score=20.07 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCH
Q psy1687 5 HLTLQVIKRFILHAKKTGFVVEHDF 29 (107)
Q Consensus 5 ~~i~~ll~~l~~~~~~tvi~vTHDl 29 (107)
.++.+.++++.+..+..+|++|-++
T Consensus 32 ee~~~~~~~l~~~~digIIlIte~~ 56 (109)
T 2d00_A 32 EEAQSLLETLVERGGYALVAVDEAL 56 (109)
T ss_dssp HHHHHHHHHHHHHCCCSEEEEETTT
T ss_pred HHHHHHHHHHhhCCCeEEEEEeHHH
Confidence 5778889998877788999888654
No 190
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=22.07 E-value=1.1e+02 Score=23.97 Aligned_cols=38 Identities=16% Similarity=-0.009 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF 42 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl 42 (107)
.-++.+..++.+++.|. -+.+|||+++|..=||=|+.-
T Consensus 233 ~p~~~~~a~~~a~~~G~-~v~~~~d~~eav~~ADVVytd 270 (418)
T 2yfk_A 233 MPEVEEVAKKNAAEFGG-NFTKTNSMAEAFKDADVVYPK 270 (418)
T ss_dssp CHHHHHHHHHHHHHHSS-EEEEESCHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHHHHHcCC-EEEEEcCHHHHhcCCCEEEEc
Confidence 34556666677666664 467789999999999988775
No 191
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=21.86 E-value=65 Score=22.32 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=18.5
Q ss_pred HHHHHHHHHh---hcCcEEEEEeCCHHHHHhh
Q psy1687 7 TLQVIKRFIL---HAKKTGFVVEHDFIMATYL 35 (107)
Q Consensus 7 i~~ll~~l~~---~~~~tvi~vTHDl~~a~~~ 35 (107)
+...+.++.. ..+.+|++|||-.-....+
T Consensus 169 v~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~ 200 (258)
T 3kkk_A 169 VLPFWFDHIAPDILANKKVMVAAHGNSLRGLV 200 (258)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCEEEEEcCHHHHHHHH
Confidence 3444555322 2578999999987766544
No 192
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=21.46 E-value=73 Score=21.23 Aligned_cols=30 Identities=7% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHhh------cCcEEEEEeCCHHHHHhhc
Q psy1687 7 TLQVIKRFILH------AKKTGFVVEHDFIMATYLS 36 (107)
Q Consensus 7 i~~ll~~l~~~------~~~tvi~vTHDl~~a~~~~ 36 (107)
+.+.+.++.+. .+.+|++|||---....+|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~vlvVsHg~~ir~ll~ 152 (202)
T 3mxo_A 117 IEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVC 152 (202)
T ss_dssp HHHHHHHHTTCCCTTCCSCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccCCCceEEEEeCHHHHHHHHH
Confidence 44555666542 2568999999876655443
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=21.27 E-value=34 Score=24.86 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=17.5
Q ss_pred HHHHHHHhhcCcEEEEEeCCHH
Q psy1687 9 QVIKRFILHAKKTGFVVEHDFI 30 (107)
Q Consensus 9 ~ll~~l~~~~~~tvi~vTHDl~ 30 (107)
++++++....+.++|+++||+.
T Consensus 147 ~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 147 AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhcCCEEEEEEeCCCC
Confidence 6777776556889999999974
No 194
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=20.89 E-value=84 Score=21.99 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=12.3
Q ss_pred CcEEEEEeCCHHHHHh
Q psy1687 19 KKTGFVVEHDFIMATY 34 (107)
Q Consensus 19 ~~tvi~vTHDl~~a~~ 34 (107)
+.+|++|||---....
T Consensus 168 ~~~vliVsHg~~ir~l 183 (265)
T 3f3k_A 168 ASDIMVFAHGHALRYF 183 (265)
T ss_dssp CCEEEEEECHHHHHHH
T ss_pred CCcEEEEeChHHHHHH
Confidence 5799999998766543
No 195
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.70 E-value=1e+02 Score=19.63 Aligned_cols=24 Identities=4% Similarity=-0.036 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEeCC
Q psy1687 4 LHLTLQVIKRFILHAKKTGFVVEHD 28 (107)
Q Consensus 4 ~~~i~~ll~~l~~~~~~tvi~vTHD 28 (107)
-.++.+.++++.+. +..||++|-+
T Consensus 30 ~ee~~~~~~~l~~~-digIIlIte~ 53 (115)
T 3aon_B 30 KTEIRKTIDEMAKN-EYGVIYITEQ 53 (115)
T ss_dssp HHHHHHHHHHHHHT-TEEEEEEEHH
T ss_pred HHHHHHHHHHHHhc-CceEEEEeHH
Confidence 35788899999877 9999999854
No 196
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=20.22 E-value=90 Score=23.56 Aligned_cols=37 Identities=3% Similarity=0.073 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCcEEEEEeCCHHH----------------HHhhcCEEEEec
Q psy1687 7 TLQVIKRFILHAKKTGFVVEHDFIM----------------ATYLSDRVIVFE 43 (107)
Q Consensus 7 i~~ll~~l~~~~~~tvi~vTHDl~~----------------a~~~~driivl~ 43 (107)
++.-|..++++.+.+||++.|--.. ...+||.++.+.
T Consensus 189 ~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~ 241 (366)
T 1xp8_A 189 ALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVR 241 (366)
T ss_dssp HHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEE
Confidence 3334444467889999998885321 356788888887
No 197
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.18 E-value=1.5e+02 Score=19.36 Aligned_cols=37 Identities=11% Similarity=-0.105 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC-HHHHHhhcCEEEEec
Q psy1687 6 LTLQVIKRFILHAKKTGFVVEHD-FIMATYLSDRVIVFE 43 (107)
Q Consensus 6 ~i~~ll~~l~~~~~~tvi~vTHD-l~~a~~~~driivl~ 43 (107)
++.+.++.. ++.|..+|.+|.+ -.....+||.++.+.
T Consensus 131 ~~~~~~~~a-k~~g~~vI~IT~~~~s~L~~~ad~~l~~~ 168 (198)
T 2xbl_A 131 NILAAFREA-KAKGMTCVGFTGNRGGEMRELCDLLLEVP 168 (198)
T ss_dssp HHHHHHHHH-HHTTCEEEEEECSCCCTHHHHCSEEEECS
T ss_pred HHHHHHHHH-HHCCCeEEEEECCCCCcHHHhCCEEEEeC
Confidence 455666544 4568777777764 356678899888776
Done!