RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1687
(107 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 32.1 bits (73), Expect = 0.007
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRV-------IVFEGSPSISTLANAPQN 57
IK+ K T V HD + A + DR+ ++ GSP + + P +
Sbjct: 176 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSP--TEVYLRPNS 230
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 29.9 bits (67), Expect = 0.037
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 10/49 (20%)
Query: 9 QVIKRFILHAKKTG---FVVEHDFIMATYLSDRV-------IVFEGSPS 47
I +L K G ++EH + D + I+ EG
Sbjct: 187 HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 235
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 29.9 bits (67), Expect = 0.038
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRV-------IVFEGSPSISTLANAPQN 57
L+++K T ++ H+ + + D V ++ + + S + + P+
Sbjct: 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV--SEVFSHPKT 234
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 29.8 bits (67), Expect = 0.041
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 20 KTGFVVEHDFIMATYLSDRV-------IVFEGSPSISTLANAPQN 57
KT VV H+ A ++S V I EG P + PQ+
Sbjct: 200 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP--EQVFGNPQS 242
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 29.1 bits (65), Expect = 0.088
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 20 KTGFVVEHDFIMATYLSDRV-------IVFEGSPS 47
T +VE + + A ++ IV EG S
Sbjct: 190 TTILLVEQNALGALKVAHYGYVLETGQIVLEGKAS 224
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.5 bits (63), Expect = 0.11
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRV-------IVFEGSPSISTLANAPQN 57
+++ K T + HD A ++DR+ ++ G P + P
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKP--EEIFEKPVE 221
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 28.4 bits (63), Expect = 0.12
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG 44
L I + + HD + R + +G
Sbjct: 171 LDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKG 207
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.4 bits (63), Expect = 0.14
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRV-------IVFEGSPSISTLANAPQN 57
+K+ T V HD + A + DR+ + GSP + + P N
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSP--DEVYDKPAN 233
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.4 bits (63), Expect = 0.15
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRV-------IVFEGSPSISTLANAPQN 57
I R +T V HD + A L+D++ + G P L + P +
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP--LELYHYPAD 224
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 27.7 bits (61), Expect = 0.22
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 17 HAKKTGFVVEHDFIMATYLSDRV-------IVFEGSPSISTLANAPQN 57
T VV HD ++DRV +V G P L + P +
Sbjct: 189 RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP--EDLYDNPVS 234
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 27.7 bits (61), Expect = 0.22
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRV-------IVFEGSPSISTLANAP----QN 57
+ ++ V HD I A L+D V IV +G L +A
Sbjct: 167 EELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL--KELFSAKNGEVAE 224
Query: 58 LLNGMNKFLSL 68
L+ N L +
Sbjct: 225 FLSARNLLLKV 235
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 24.2 bits (52), Expect = 4.2
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 20 KTGFVVEHDFIMATYLSDRV-------IVFEGSPS 47
T V H+ + +L DR+ IV G+
Sbjct: 184 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVE 218
>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 217
Score = 23.3 bits (50), Expect = 8.4
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 39 VIVFEGSPSISTLANAPQNLLNGMNKFLSLLGI-TFRRDP-----NNFRPRINKNNSVKD 92
V+V + NL + + +G F N + +I +++
Sbjct: 141 VVVMKSKNDQGITNKCKMNLQDNNGNDIGFIGFHQFNNIAKLVASNWYNRQIERSSRTLG 200
Query: 93 C 93
C
Sbjct: 201 C 201
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.417
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 389,322
Number of extensions: 15773
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 16
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)