BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16872
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/503 (32%), Positives = 243/503 (48%), Gaps = 62/503 (12%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
+NY +A+ + G FI+RIEDTD+ R+VP A E++ LKW+G+ DE VGG +GPY QS
Sbjct: 24 FNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQS 83
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+RL LYQK + LL G AY+ F + L IRK+ K G YD + RN+ E+ +E+
Sbjct: 84 ERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKE--KGG----YDGRARNIPPEEAEER 137
Query: 212 LKENSKYCIRFKLTN-HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDH 270
+ + IR K+ T +D + G + Y+ D V++KSDG+PTYH ANVVDDH
Sbjct: 138 ARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDN-QEIPDVVLLKSDGYPTYHLANVVDDH 196
Query: 271 HMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAI 330
M ++ V+R EW +ST H+L+Y+AFGW P+F H R+ S++
Sbjct: 197 LMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKISKRKSHTSLDWY 256
Query: 331 RNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGI 390
+ FLP AL N++ G FSM D E I
Sbjct: 257 KAEGFLPEALRNYLCLMG--------------FSMPDGRE-------------------I 283
Query: 391 FWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVN 450
F + F F + V+ DL L N IR V+S +E++ + +
Sbjct: 284 FTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLS----------LEEVAERVKP 333
Query: 451 EFPNSSLQIDDD-YLNYVLCWASERIFKLQDLVGKD-FAFIWVKPSIEHLSQHPVESYGK 508
+ L + + YL + R L++ K + F +PV +
Sbjct: 334 FLREAGLSWESEAYLRRAVELMRPRFDTLKEFPEKARYLFT---------EDYPVSEKAQ 384
Query: 509 VMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQG 568
L L +L+ L PRL+ + +T +L LR F+ E+GV+ + LR +L+G +
Sbjct: 385 RKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLET 444
Query: 569 PSVGEMMEILTKENTIRRLRDVL 591
P + E++ +L KE +RRL L
Sbjct: 445 PGLFEILALLGKERALRRLERAL 467
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 241 bits (615), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 159/503 (31%), Positives = 240/503 (47%), Gaps = 62/503 (12%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
+NY +A+ + G FI+RIEDTD+ R+VP A E++ LKW+G+ DE V GPY QS
Sbjct: 24 FNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVAAPTGPYRQS 83
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+RL LYQK + LL G AY+ F + L IRK+ K G YD + RN+ E+ +E+
Sbjct: 84 ERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKE--KGG----YDGRARNIPPEEAEER 137
Query: 212 LKENSKYCIRFKLTN-HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDH 270
+ + IR K+ T +D + G + Y+ D V++KSDG+PTYH ANVVDDH
Sbjct: 138 ARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDN-QEIPDVVLLKSDGYPTYHLANVVDDH 196
Query: 271 HMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAI 330
M ++ V+R EW +ST H+L+Y+AFGW P+F H R+ S++
Sbjct: 197 LMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKISKRKSHTSLDWY 256
Query: 331 RNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGI 390
+ FLP AL N++ G FSM D E I
Sbjct: 257 KAEGFLPEALRNYLCLMG--------------FSMPDGRE-------------------I 283
Query: 391 FWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVN 450
F + F F + V+ DL L N IR V+S +E++ + +
Sbjct: 284 FTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLS----------LEEVAERVKP 333
Query: 451 EFPNSSLQIDDD-YLNYVLCWASERIFKLQDLVGKD-FAFIWVKPSIEHLSQHPVESYGK 508
+ L + + YL + R L++ K + F +PV +
Sbjct: 334 FLREAGLSWESEAYLRRAVELMRPRFDTLKEFPEKARYLFT---------EDYPVSEKAQ 384
Query: 509 VMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQG 568
L L +L+ L PRL+ + +T +L LR F+ E+GV+ + LR +L+G +
Sbjct: 385 RKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLET 444
Query: 569 PSVGEMMEILTKENTIRRLRDVL 591
P + E++ +L KE +RRL L
Sbjct: 445 PGLFEILALLGKERALRRLERAL 467
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
pdb|4GRI|B Chain B, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
Length = 512
Score = 238 bits (607), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 158/507 (31%), Positives = 245/507 (48%), Gaps = 47/507 (9%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
+NY FAKS G F+LRIEDTDQ+R+ PEA L LKW+G+ DE VGG+Y PY+QS
Sbjct: 47 FNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQS 106
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+R A+Y++ + L+ +G AY C+CS RL I+K + + P YD CRNL+ E+++
Sbjct: 107 QRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENA 166
Query: 212 LKENSKYCIRFKLTNHTE-SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDH 270
L + K +RFK+ + S+ D++ G I++ DPVI+KSDG PTYH ANVVDD+
Sbjct: 167 LIKKIKPVVRFKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDY 226
Query: 271 HMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAI 330
M I+HVLR EW S H+L+YKAF W PP + H R G ++
Sbjct: 227 LMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGSTALRQF 286
Query: 331 RNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGI 390
+LP A+IN+VT G + D K + FS DL
Sbjct: 287 IEDGYLPEAIINYVTLLGWSYDD-----KREFFSKNDL---------------------- 319
Query: 391 FWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVN 450
+ FF+ ++ +N++ D L+ FN IR E++ +L+ Q
Sbjct: 320 ---EQFFS---IEKINKSPAIFDYHKLDFFNSYYIRE----KKDEDLFNLLLPFFQKKGY 369
Query: 451 EFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESY--GK 508
S+L+ ++ L ++ RI KL D A K E + ++ + K
Sbjct: 370 VSKPSTLE-ENQKLKLLIPLIKSRIKKLSD------ALNMTKFFYEDIKSWNLDEFLSRK 422
Query: 509 VMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQG 568
ILE + P L+ + + + +F+ G + + +R + G K
Sbjct: 423 KTAKEVCSILELIKPILEGFEKRSSEENDKIFYDFAESNGFKLGEILLPIRIAALGSKVS 482
Query: 569 PSVGEMMEILTKENTIRRLRDVLEYSR 595
P + + ++++ K R++ E+ R
Sbjct: 483 PPLFDSLKLIGKSKVFERIKLAQEFLR 509
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 143/493 (29%), Positives = 221/493 (44%), Gaps = 59/493 (11%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
+N+L+A+ G FILRIEDTD+ R PE E + + L+W+G+ DE GPY QS
Sbjct: 24 FNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDE--------GPYFQS 75
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
RL LY++ +QTLL G AY C+C+ L +R + G P+YDN+ R+LT E+
Sbjct: 76 DRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAF 135
Query: 212 LKENSKYCIRFKLTNHTE-SWQDLVYGDISYNVFHNEGDPVIIKSD-----GFPTYHFAN 265
IRFK+ + + WQDLV G +S+ GD VI ++ G+P Y+
Sbjct: 136 EAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVV 195
Query: 266 VVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDM 325
VVDD M I+ V+RG + +T K IL+Y+A G TPP FAH R G
Sbjct: 196 VVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTGQKLSKRDGVT 255
Query: 326 SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTI 385
S+ R +L AL N++T G + +LF++ DL K
Sbjct: 256 SISDFRAMGYLAPALANYMTLLGWSPPE----GVGELFTL-DLAAK-------------- 296
Query: 386 KEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLK 445
F + +N+ + D LN NR I+++ EE + + L
Sbjct: 297 -------------HFSFERINKAGARFDWDKLNWLNRQYIQQL----EPEEFLAELIPLW 339
Query: 446 QHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVES 505
Q F D +L + + L++ + D ++ PS+ S E+
Sbjct: 340 QGAGYAFDEER---DRPWLFDLAQLLQPGLNTLREAI--DQGAVFFIPSVTFDS----EA 390
Query: 506 YGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGL 565
++ + IL +L+ L T +++ + GV+ M+ LR +L+G
Sbjct: 391 MAQLGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGA 450
Query: 566 KQGPSVGEMMEIL 578
GP + +IL
Sbjct: 451 VHGPDLMAAWQIL 463
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 150/569 (26%), Positives = 246/569 (43%), Gaps = 106/569 (18%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFXXXXXXXXXX 85
VRVRFAPSPT F + VG G R+++
Sbjct: 14 VRVRFAPSPTG-FLH----VG----------------GARTAL----------------- 35
Query: 86 XXXXXXYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
+N+LFA+ G FILRIEDTD R E EKL + L+W+G++ DE VGG++
Sbjct: 36 ------FNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLRWLGLLWDEGPDVGGDH 89
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNL 203
GPY QS+R+ +Y++ + L+ G AY + + R+ + G P Y + +
Sbjct: 90 GPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEXREKLLSEGKAPHYSQEXFEKFD 149
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHF 263
T E+ E ++ + + FK D+V G++ + GD VI +S+G PTY+F
Sbjct: 150 TPERRREYEEKGLRPAVFFKXPRKDYVLNDVVKGEVVFKT-GAIGDFVIXRSNGLPTYNF 208
Query: 264 ANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQG 323
A VVDD I+HV+RG + +T + + +Y+AF PP FAH R G
Sbjct: 209 ACVVDDXLXEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHG 268
Query: 324 DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKP 383
SVEA R+ +LP AL+N++ G + + +L ++++L+
Sbjct: 269 ATSVEAFRDXGYLPEALVNYLALLGWSHPEGK-----ELLTLEELI-------------- 309
Query: 384 TIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEK 443
+ F L ++ N D L N +R +EK
Sbjct: 310 --------------SSFSLDRLSPNPAIFDPQKLKWXNGYYLRNXP-----------IEK 344
Query: 444 LKQHIVNEFPNSSLQ-IDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQHP 502
L + F + ++ ID++Y VL ER+ L + ++ F + P+ + +
Sbjct: 345 LAELAKPFFEKAGIKIIDEEYFKKVLEITKERVEVLSEFP-EESRFFFEDPAPVEIPEEX 403
Query: 503 VESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSL 562
E + L LQ +T + + ++ + GV+ F LR L
Sbjct: 404 KE------------VFSQLKEELQNVR-WTXEEITPVFKKVLKQHGVKPKEFYXTLRRVL 450
Query: 563 SGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+G ++GP + ++ +L KE +RR+ L
Sbjct: 451 TGREEGPELVNIIPLLGKEIFLRRIERSL 479
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 147/572 (25%), Positives = 245/572 (42%), Gaps = 109/572 (19%)
Query: 22 CHSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFXXXXXX 81
C VRVRFAPSPT VG G R+++
Sbjct: 22 CFELVRVRFAPSPTGHLH-----VG----------------GARTAL------------- 47
Query: 82 XXXXXXXXXXYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETV 141
+N++FA+ G FILRIEDTD R E +++ + L+W G+ DE +
Sbjct: 48 ----------FNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDI 97
Query: 142 GGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201
GG++GPY QS+RL +Y++ + L+ + AY ++D K
Sbjct: 98 GGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYD-------KEDPSKELFT-------- 142
Query: 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTY 261
T E E ++ I+FK+ S++DL+ G + ++ E D +I+KS+GFPTY
Sbjct: 143 --TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLE-DFIIMKSNGFPTY 199
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXR 321
+FA VVDDH M ISHV RG + +T K ++IY+AFGW P F H R
Sbjct: 200 NFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR 259
Query: 322 QGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI 381
G SVE R L AL+N++ G R ++F++++ ++
Sbjct: 260 HGATSVEHFRREGILSRALMNYLALLG------WRVEGDEIFTIEEKLQS---------- 303
Query: 382 KPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLV 441
FD + ++ D L N +RR+ E+++
Sbjct: 304 ------------------FDPKDISNKGVIFDYQKLEWVNGKHMRRI----DLEDLKREF 341
Query: 442 EKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQH 501
+ ++ E P+ +D+ Y + L E++ L L D + ++ E+ +
Sbjct: 342 IEWAKYAGKEIPS----VDERYFSETLRICREKVNTLSQLY--DIMYPFMNDDYEYEKDY 395
Query: 502 PVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTS 561
VE + K +LE + + + + + LR+ S + +L+R +
Sbjct: 396 -VEKFLK--REEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGA 452
Query: 562 LSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
++G P + E +E+L KE T++RL L++
Sbjct: 453 VTGKLVTPGLFETIEVLGKERTLKRLERTLQF 484
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 147/572 (25%), Positives = 245/572 (42%), Gaps = 109/572 (19%)
Query: 22 CHSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFXXXXXX 81
C VRVRFAPSPT VG G R+++
Sbjct: 21 CFELVRVRFAPSPTGHLH-----VG----------------GARTAL------------- 46
Query: 82 XXXXXXXXXXYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETV 141
+N++FA+ G FILRIEDTD R E +++ + L+W G+ DE +
Sbjct: 47 ----------FNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDI 96
Query: 142 GGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201
GG++GPY QS+RL +Y++ + L+ + AY ++D K
Sbjct: 97 GGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYD-------KEDPSKELFT-------- 141
Query: 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTY 261
T E E ++ I+FK+ S++DL+ G + ++ E D +I+KS+GFPTY
Sbjct: 142 --TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLE-DFIIMKSNGFPTY 198
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXR 321
+FA VVDDH M ISHV RG + +T K ++IY+AFGW P F H R
Sbjct: 199 NFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR 258
Query: 322 QGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI 381
G SVE R L AL+N++ G R ++F++++ ++
Sbjct: 259 HGATSVEHFRREGILSRALMNYLALLG------WRVEGDEIFTIEEKLQS---------- 302
Query: 382 KPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLV 441
FD + ++ D L N +RR+ E+++
Sbjct: 303 ------------------FDPKDISNKGVIFDYQKLEWVNGKHMRRI----DLEDLKREF 340
Query: 442 EKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQH 501
+ ++ E P+ +D+ Y + L E++ L L D + ++ E+ +
Sbjct: 341 IEWAKYAGKEIPS----VDERYFSETLRICREKVNTLSQLY--DIMYPFMNDDYEYEKDY 394
Query: 502 PVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTS 561
VE + K +LE + + + + + LR+ S + +L+R +
Sbjct: 395 -VEKFLK--REEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGA 451
Query: 562 LSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
++G P + E +E+L KE T++RL L++
Sbjct: 452 VTGKLVTPGLFETIEVLGKERTLKRLERTLQF 483
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 149/574 (25%), Positives = 244/574 (42%), Gaps = 113/574 (19%)
Query: 22 CHSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFXXXXXX 81
C VRVRFAPSPT VG G R+++
Sbjct: 126 CFELVRVRFAPSPTGHLH-----VG----------------GARTAL------------- 151
Query: 82 XXXXXXXXXXYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETV 141
+N++FA+ G FILRIEDTD R E +++ + L+W G+ DE +
Sbjct: 152 ----------FNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDI 201
Query: 142 GGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201
GG++GPY QS+RL +Y++ + L+ + AY ++D K
Sbjct: 202 GGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYD-------KEDPSKELFT-------- 246
Query: 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEG--DPVIIKSDGFP 259
T E E ++ I+FK+ S++DL+ G Y F N D +I+KS+GFP
Sbjct: 247 --TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKG---YMEFDNSTLEDFIIMKSNGFP 301
Query: 260 TYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXX 319
TY+FA VVDDH M ISHV RG + +T K ++IY+AFGW P F H
Sbjct: 302 TYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLS 361
Query: 320 XRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYN 379
R G SVE R L AL+N++ G R ++F++++ ++
Sbjct: 362 KRHGATSVEHFRREGILSRALMNYLALLG------WRVEGDEIFTIEEKLQS-------- 407
Query: 380 RIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRS 439
FD + ++ D L N +RR+ E+++
Sbjct: 408 --------------------FDPKDISNKGVIFDYQKLEWVNGKHMRRI----DLEDLKR 443
Query: 440 LVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLS 499
+ ++ E P+ +D+ Y + L E++ L L D + ++ E+
Sbjct: 444 EFIEWAKYAGKEIPS----VDERYFSETLRICREKVNTLSQLY--DIMYPFMNDDYEYEK 497
Query: 500 QHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLR 559
+ VE + K +LE + + + + + LR+ S + +L+R
Sbjct: 498 DY-VEKFLK--REEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIR 554
Query: 560 TSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
+++G P + E +E+L KE T++RL L++
Sbjct: 555 GAVTGKLVTPGLFETIEVLGKERTLKRLERTLQF 588
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 143/299 (47%), Gaps = 12/299 (4%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
+N+ +A+ G+F+ RIEDTD R E+ L L+W+G+ DE VGG YGPY QS
Sbjct: 44 FNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQS 103
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPK--YDNKCRNLTQEQID 209
+R +Y+ + LL G AY F + + V +G PK YDN R+LT Q
Sbjct: 104 QRAEIYRDVLARLLAAGEAYHAFSTPEE---VEARHVAAGRNPKLGYDNFDRHLTDAQRA 160
Query: 210 EKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDD 269
L E + +R ++ + +W DLV G +++ + D + ++ G P Y N DD
Sbjct: 161 AYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAA-GSVPDFALTRASGDPLYTLVNPCDD 219
Query: 270 HHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPPKFAHXXXXXXXXXXXXXXRQGD 324
M I+HVLRG + ST + + +++A PKFAH R
Sbjct: 220 ALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ 279
Query: 325 MSVEAIRNSEFLPNALINFVTNFGGGF-HDHQRTSKSQLFSMKDLVEKVCNNATYNRIK 382
++ A R+ F+P L+N++ G DH ++ + D+ + + A +++ K
Sbjct: 280 SNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVAAFDVADVNSSPARFDQKK 338
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 143/299 (47%), Gaps = 12/299 (4%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
+N+ +A+ G+F+ RIEDTD R E+ L L+W+G+ DE VGG YGPY QS
Sbjct: 29 FNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQS 88
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPK--YDNKCRNLTQEQID 209
+R +Y+ + LL G AY F + + V +G PK YDN R+LT Q
Sbjct: 89 QRAEIYRDVLARLLAAGEAYHAFSTPEE---VEARHVAAGRNPKLGYDNFDRHLTDAQRA 145
Query: 210 EKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDD 269
L E + +R ++ + +W DLV G +++ + D + ++ G P Y N DD
Sbjct: 146 AYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAA-GSVPDFALTRASGDPLYTLVNPCDD 204
Query: 270 HHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPPKFAHXXXXXXXXXXXXXXRQGD 324
M I+HVLRG + ST + + +++A PKFAH R
Sbjct: 205 ALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ 264
Query: 325 MSVEAIRNSEFLPNALINFVTNFGGGF-HDHQRTSKSQLFSMKDLVEKVCNNATYNRIK 382
++ A R+ F+P L+N++ G DH ++ + D+ + + A +++ K
Sbjct: 265 SNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVAAFDVADVNSSPARFDQKK 323
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 143/299 (47%), Gaps = 12/299 (4%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
+N+ +A+ G+F+ RIEDTD R E+ L L+W+G+ DE VGG YGPY QS
Sbjct: 44 FNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQS 103
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPK--YDNKCRNLTQEQID 209
+R +Y+ + LL G AY F + + V +G PK YDN R+LT Q
Sbjct: 104 QRAEIYRDVLARLLAAGEAYHAFSTPEE---VEARHVAAGRNPKLGYDNFDRHLTDAQRA 160
Query: 210 EKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDD 269
L E + +R ++ + +W DLV G +++ + D + ++ G P Y N DD
Sbjct: 161 AYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAA-GSVPDFALTRASGDPLYTLVNPCDD 219
Query: 270 HHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPPKFAHXXXXXXXXXXXXXXRQGD 324
M I+HVLRG + ST + + +++A PKFAH R
Sbjct: 220 ALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ 279
Query: 325 MSVEAIRNSEFLPNALINFVTNFGGGF-HDHQRTSKSQLFSMKDLVEKVCNNATYNRIK 382
++ A R+ F+P L+N++ G DH ++ + D+ + + A +++ K
Sbjct: 280 SNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVAAFDVADVNSSPARFDQKK 338
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 142/295 (48%), Gaps = 17/295 (5%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
Y + FA+ G+F+LRIEDTD R EAV+ + + + W+G+ DE GPY Q
Sbjct: 48 YPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDE--------GPYYQM 99
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+R+ Y++ + + G Y + S L+ +R+ +G P+YD R + + E
Sbjct: 100 QRMDRYREVLAQMQEKGLVYPXYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEP 159
Query: 212 LKENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTYHFANVV 267
+RF+ LT T +W D V G + + NE D V+ + DG P Y+F VV
Sbjct: 160 -PAGVAPVLRFRNPLTG-TVAWDDAVKGRVEIS---NEELDDLVVARPDGTPMYNFCVVV 214
Query: 268 DDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSV 327
DD M I+HV+RG + +T + I I +A G P +AH R G MSV
Sbjct: 215 DDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQGEKMSKRHGAMSV 274
Query: 328 EAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIK 382
R++ +LP A++N++ G D + ++ Q DL + A Y+ K
Sbjct: 275 MGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEWFDLEHLGKSPAQYDHNK 329
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 28/221 (12%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ +A+ ++G ILRIEDTD R PEA + + DL+W+GV DE+ +QS
Sbjct: 120 NHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDET---------VIQSD 170
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLT-QEQIDE- 210
R+ Y + + L+ G AY C C ++ CR+L +E +
Sbjct: 171 RMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEAC--------HCRSLGFRENLQRW 222
Query: 211 ----KLKENSKYC-IRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFAN 265
++KE S ++ L + + +D V S + E + +P +F+
Sbjct: 223 REMFEMKEGSAVVRVKTDLNHPNPAIRDWV----SMRIVEAEHPRTGTRYRVYPMMNFSV 278
Query: 266 VVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAH 306
VDDH + ++HVLRG + + K +Y+ GW PP+F H
Sbjct: 279 AVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIH 319
>pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli
Yadb Orf
pdb|4A91|A Chain A, Crystal Structure Of The Glutamyl-Queuosine Trnaasp
Synthetase From E.Coli Complexed With L-Glutamate
Length = 298
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL-QS 151
+YL A++ G +++RIED D R VP A E + + L+ G+ D G L QS
Sbjct: 29 SYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWD---------GDVLWQS 79
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+R Y++ + L G +Y C C+ +R+ I G+ YD CR L
Sbjct: 80 QRHDAYREALAWLHEQGLSYYCTCTRARIQSI------GGI---YDGHCRVLHHG----- 125
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
+N+ +R + + + D + G I + D +I + DG Y+ A VVDDH
Sbjct: 126 -PDNA--AVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHF 182
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAH 306
++ ++RG + T + I +Y+ FGW P + H
Sbjct: 183 QGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIH 217
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 17/197 (8%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ A+ + G LR +DT+ + E VE ++ D++W+G + +Y L +
Sbjct: 51 NFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAY 110
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNLTQ-EQID 209
+ L K G AY + ++ R + G Y ++ NL E++
Sbjct: 111 AIELINK--------GLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 162
Query: 210 EKLKENSKYCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVV 267
E K C+R K+ + +D V I + H G+ I +P Y F + +
Sbjct: 163 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI----YPMYDFTHCI 218
Query: 268 DDHHMNISHVLRGVEWQ 284
D I+H LR +E+Q
Sbjct: 219 SDALEGITHSLRTLEFQ 235
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 97 AKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLAL 156
A+ + G F LR++DT+ E V+ + DLKW+G+ D E Y S
Sbjct: 94 ARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGL--DWGEHF------YYASDYFDR 145
Query: 157 YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID--EKLK- 213
Y + L+ G AY S L+ +R +A G Y ++ +E +D ++K
Sbjct: 146 YYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRS---VEENLDLLRRMKA 202
Query: 214 ---ENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDG---FPTYHFAN 265
+ ++ +R K LT +D V Y + + P SD +P Y F +
Sbjct: 203 GEFADGEHVLRAKIDLTAPNMKLRDPVL----YRIVNK---PHFRTSDEWHIYPAYDFEH 255
Query: 266 VVDDHHMNISHVLRGVEW 283
+ D ++H + +E+
Sbjct: 256 PLQDAIEGVTHSMCSLEF 273
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ A+ + G LR +DT+ + E VE ++ D++W+G + +Y L +
Sbjct: 50 NFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAY 109
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNLTQ-EQID 209
+ L K G AY + ++ R + G Y ++ NL E++
Sbjct: 110 AIELINK--------GLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 161
Query: 210 EKLKENSKYCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVV 267
E K C+R K+ + +D V I + H G+ I +P Y F + +
Sbjct: 162 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI----YPMYDFTHCI 217
Query: 268 DDHHMNISHVLRGVEWQ 284
D I+H L +E+Q
Sbjct: 218 SDALEGITHSLCTLEFQ 234
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ A+ + G LR +DT+ + E VE ++ D++W+G + +Y L +
Sbjct: 50 NFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAY 109
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNLTQ-EQID 209
+ L K G AY + ++ R + G Y ++ NL E++
Sbjct: 110 AIELINK--------GLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 161
Query: 210 EKLKENSKYCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVV 267
E K C+R K+ + +D V I + H G+ I +P Y F + +
Sbjct: 162 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI----YPMYDFTHCI 217
Query: 268 DDHHMNISHVLRGVEWQ 284
D I+H L +E+Q
Sbjct: 218 SDALEGITHSLCTLEFQ 234
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ A+ + G LR +DT+ + E VE ++ D++W+G + +Y L +
Sbjct: 51 NFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAY 110
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNLTQ-EQID 209
+ L K G AY + ++ R + G Y ++ NL E++
Sbjct: 111 AIELINK--------GLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 162
Query: 210 EKLKENSKYCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVV 267
E K C+R K+ + +D V I + H G+ I +P Y F + +
Sbjct: 163 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI----YPMYDFTHCI 218
Query: 268 DDHHMNISHVLRGVEWQ 284
D I+H L +E+Q
Sbjct: 219 SDALEGITHSLCTLEFQ 235
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ A+ + G LR +DT+ + E VE ++ D++W+G + +Y L +
Sbjct: 51 NFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAY 110
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNLTQ-EQID 209
+ L K G AY + ++ R + G Y ++ NL E++
Sbjct: 111 AIELINK--------GLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 162
Query: 210 EKLKENSKYCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVV 267
E K C+R K+ + +D V I + H G+ I +P Y F + +
Sbjct: 163 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI----YPMYDFTHCI 218
Query: 268 DDHHMNISHVLRGVEWQ 284
D I+H L +E+Q
Sbjct: 219 SDALEGITHSLCTLEFQ 235
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ A+ + G LR +DT+ + E VE ++ D++W+G + +Y L +
Sbjct: 50 NFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAY 109
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNLTQ-EQID 209
+ L K G AY + ++ R + G Y ++ NL E++
Sbjct: 110 AIELINK--------GLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 161
Query: 210 EKLKENSKYCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVV 267
E K C+R K+ + +D V I + H G+ I +P Y F + +
Sbjct: 162 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI----YPMYDFTHCI 217
Query: 268 DDHHMNISHVLRGVEWQ 284
D I+H L +E+Q
Sbjct: 218 SDALEGITHSLCTLEFQ 234
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ A+ + G LR +DT+ + E VE ++ D++W+G + +Y L +
Sbjct: 43 NFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAY 102
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNLTQ-EQID 209
+ L K G AY + ++ R + G Y ++ NL E++
Sbjct: 103 AIELINK--------GLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 154
Query: 210 EKLKENSKYCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVV 267
E K C+R K+ + +D V I + H G+ I +P Y F + +
Sbjct: 155 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI----YPMYDFTHCI 210
Query: 268 DDHHMNISHVLRGVEWQ 284
D I+H L +E+Q
Sbjct: 211 SDALEGITHSLCTLEFQ 227
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 17/197 (8%)
Query: 93 NYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK 152
N+ A+ + G LR +DT+ + E VE ++ D++W+G + +Y L +
Sbjct: 50 NFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAY 109
Query: 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKC--RNLTQ-EQID 209
+ L K G AY + + R + G Y ++ NL E++
Sbjct: 110 AIELINK--------GLAYVDELTPEQTREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 161
Query: 210 EKLKENSKYCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVV 267
E K C+R K+ + +D V I + H G+ I +P Y F + +
Sbjct: 162 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCI----YPMYDFTHCI 217
Query: 268 DDHHMNISHVLRGVEWQ 284
D I+H L +E+Q
Sbjct: 218 SDALEGITHSLCTLEFQ 234
>pdb|1EYX|A Chain A, Crystal Structure Of R-Phycoerythrin At 2.2 Angstroms
pdb|1EYX|K Chain K, Crystal Structure Of R-Phycoerythrin At 2.2 Angstroms
Length = 164
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 531 FTRDSLATPLREFSTEQGVEYSTFMKLLRTSLS 563
FTRD L P R+ S + GVEYST + + SLS
Sbjct: 133 FTRDRLCGP-RDMSAQAGVEYSTALDYIINSLS 164
>pdb|3MWN|A Chain A, Structure Of The Novel 14 Kda Fragment Of Alpha-Subunit Of
Phycoerythrin From The Starving Cyanobacterium
Phormidium Tenue
pdb|3MWN|B Chain B, Structure Of The Novel 14 Kda Fragment Of Alpha-Subunit Of
Phycoerythrin From The Starving Cyanobacterium
Phormidium Tenue
Length = 133
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 531 FTRDSLATPLREFSTEQGVEYSTFMKLLRTSLS 563
FTRD L P R+ S + GVE+ T + L SLS
Sbjct: 102 FTRDRLCAP-RDMSAQAGVEFCTALDYLINSLS 133
>pdb|1LIA|A Chain A, Crystal Structure Of R-Phycoerythrin From Polysiphonia At
2.8 A Resolution
pdb|1LIA|K Chain K, Crystal Structure Of R-Phycoerythrin From Polysiphonia At
2.8 A Resolution
Length = 164
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 531 FTRDSLATPLREFSTEQGVEYSTFMKLLRTSLS 563
FTRD L P R+ S + GVE+ T + L SLS
Sbjct: 133 FTRDRLCIP-RDMSAQAGVEFCTALDYLINSLS 164
>pdb|2QG3|A Chain A, Crystal Structure Of A Tyw3 Methyltransferase-Like Protein
(Af_2059) From Archaeoglobus Fulgidus Dsm 4304 At 1.95 A
Resolution
pdb|2QG3|B Chain B, Crystal Structure Of A Tyw3 Methyltransferase-Like Protein
(Af_2059) From Archaeoglobus Fulgidus Dsm 4304 At 1.95 A
Resolution
Length = 208
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 459 IDDDYLNYVLCWASERIFKLQDLVGK 484
+DD YL+YV+ WA+E++ K ++ +G+
Sbjct: 166 VDDAYLSYVVRWANEKLLKGKEKLGR 191
>pdb|1M4V|A Chain A, Crystal Structure Of Set3, A Superantigen-Like Protein
From Staphylococcus Aureus
pdb|1M4V|B Chain B, Crystal Structure Of Set3, A Superantigen-Like Protein
From Staphylococcus Aureus
Length = 204
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 146 GPYLQSKRLALYQKEV----------QTLLHNGSAYKCFCSDSRLNLIRKDA 187
G Y KR +Y++EV Q L+ N YK F DS++ +I KD
Sbjct: 120 GVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYKKFPKDSKIKVIMKDG 171
>pdb|2Z8L|A Chain A, Crystal Structure Of The Staphylococcal Superantigen-Like
Protein Ssl5 At Ph 4.6 Complexed With Sialyl Lewis X
Length = 208
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 146 GPYLQSKRLALYQKEV----------QTLLHNGSAYKCFCSDSRLNLIRKDA 187
G Y KR +Y++EV Q L+ N YK F DS++ +I KD
Sbjct: 124 GVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYKKFPKDSKIKVIMKDG 175
>pdb|2R61|A Chain A, Crystal Structure Of The Staphylococcal Superantigen-Like
Protein Ssl5 In Complex With Sialyl-Lewis X At Ph 7.4
Length = 208
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 146 GPYLQSKRLALYQKEV----------QTLLHNGSAYKCFCSDSRLNLIRKDA 187
G Y KR +Y++EV Q L+ N YK F DS++ +I KD
Sbjct: 124 GVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYKKFPKDSKIKVIMKDG 175
>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
Length = 781
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 130 WIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNL 182
WIG T GG + KR+A+Y KE + LL N + C DS NL
Sbjct: 377 WIG-------TDGGGINVFENGKRVAIYNKENRELLSN--SVLCSLKDSEGNL 420
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,671,499
Number of Sequences: 62578
Number of extensions: 726738
Number of successful extensions: 1929
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1848
Number of HSP's gapped (non-prelim): 64
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)