Query psy16872
Match_columns 605
No_of_seqs 301 out of 2101
Neff 6.0
Searched_HMMs 46136
Date Sat Aug 17 00:15:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1149|consensus 100.0 7E-142 2E-146 1108.6 42.5 479 80-601 44-523 (524)
2 PLN02627 glutamyl-tRNA synthet 100.0 5E-130 1E-134 1070.8 48.5 463 77-589 53-524 (535)
3 PRK01406 gltX glutamyl-tRNA sy 100.0 1E-123 2E-128 1023.8 49.9 460 80-591 15-476 (476)
4 PRK12558 glutamyl-tRNA synthet 100.0 5E-123 1E-127 1003.7 43.8 433 80-588 13-445 (445)
5 PRK14895 gltX glutamyl-tRNA sy 100.0 4E-120 8E-125 991.3 47.0 449 80-589 15-512 (513)
6 PRK12410 glutamylglutaminyl-tR 100.0 2E-118 4E-123 964.5 41.7 413 80-578 10-423 (433)
7 TIGR00464 gltX_bact glutamyl-t 100.0 2E-116 5E-121 964.8 49.9 455 80-592 12-469 (470)
8 COG0008 GlnS Glutamyl- and glu 100.0 4E-110 8E-115 908.3 39.3 449 80-592 20-471 (472)
9 PF00749 tRNA-synt_1c: tRNA sy 100.0 1.4E-93 3E-98 749.7 20.8 298 80-419 12-314 (314)
10 PRK05710 glutamyl-Q tRNA(Asp) 100.0 4.8E-90 1E-94 713.9 28.9 281 80-414 16-298 (299)
11 TIGR03838 queuosine_YadB gluta 100.0 3.2E-88 7E-93 693.1 25.9 262 80-369 11-272 (272)
12 TIGR00440 glnS glutaminyl-tRNA 100.0 2.3E-80 5.1E-85 679.3 26.1 297 80-428 11-339 (522)
13 PRK05347 glutaminyl-tRNA synth 100.0 1.7E-77 3.6E-82 657.9 30.4 328 51-406 14-377 (554)
14 PLN03233 putative glutamate-tR 100.0 1.3E-76 2.8E-81 649.0 28.6 325 77-427 19-377 (523)
15 PLN02859 glutamine-tRNA ligase 100.0 4E-76 8.8E-81 664.3 30.1 328 71-426 265-630 (788)
16 cd00418 GlxRS_core catalytic c 100.0 1.6E-76 3.4E-81 592.7 23.1 219 80-427 12-230 (230)
17 PTZ00402 glutamyl-tRNA synthet 100.0 7.5E-76 1.6E-80 648.9 28.9 330 71-428 53-417 (601)
18 PRK14703 glutaminyl-tRNA synth 100.0 8E-74 1.7E-78 651.6 29.2 349 50-426 15-401 (771)
19 cd00808 GluRS_core catalytic c 100.0 2.4E-73 5.2E-78 573.5 24.8 227 80-426 12-238 (239)
20 PRK04156 gltX glutamyl-tRNA sy 100.0 3E-72 6.4E-77 621.2 28.3 323 71-425 102-461 (567)
21 TIGR00463 gltX_arch glutamyl-t 100.0 2.9E-72 6.2E-77 620.5 27.6 296 70-390 93-420 (560)
22 PTZ00437 glutaminyl-tRNA synth 100.0 1.3E-71 2.9E-76 610.6 26.9 293 72-390 53-377 (574)
23 PLN02907 glutamate-tRNA ligase 100.0 1.5E-71 3.3E-76 634.0 28.1 289 70-390 213-541 (722)
24 cd00807 GlnRS_core catalytic c 100.0 1.1E-66 2.4E-71 522.4 21.1 205 80-428 12-235 (238)
25 cd09287 GluRS_non_core catalyt 100.0 9.7E-64 2.1E-68 502.5 20.6 187 80-351 12-216 (240)
26 KOG1148|consensus 100.0 3.6E-48 7.8E-53 416.1 16.4 328 70-425 248-610 (764)
27 KOG1147|consensus 100.0 8.2E-44 1.8E-48 379.6 19.3 278 70-381 200-506 (712)
28 PRK00750 lysK lysyl-tRNA synth 100.0 5.8E-26 1.3E-30 252.7 30.6 420 76-591 31-509 (510)
29 TIGR00467 lysS_arch lysyl-tRNA 99.9 3.9E-22 8.5E-27 221.3 30.8 79 512-591 437-515 (515)
30 cd00671 ArgRS_core catalytic c 99.9 1.8E-23 3.9E-28 208.3 14.5 179 76-323 9-212 (212)
31 TIGR00435 cysS cysteinyl-tRNA 99.9 2.2E-21 4.7E-26 214.1 20.0 239 70-370 20-310 (465)
32 PRK00260 cysS cysteinyl-tRNA s 99.9 3.8E-21 8.3E-26 212.3 20.3 237 70-370 22-311 (463)
33 PRK14534 cysS cysteinyl-tRNA s 99.8 5.4E-20 1.2E-24 202.2 19.3 242 70-370 20-325 (481)
34 PRK14536 cysS cysteinyl-tRNA s 99.8 5.9E-20 1.3E-24 202.6 19.3 240 70-370 22-325 (490)
35 COG0215 CysS Cysteinyl-tRNA sy 99.8 1.9E-20 4.2E-25 202.5 14.1 242 70-370 21-313 (464)
36 PLN02946 cysteine-tRNA ligase 99.8 4.7E-20 1E-24 205.6 15.2 240 69-370 78-368 (557)
37 PRK01611 argS arginyl-tRNA syn 99.8 5.7E-20 1.2E-24 205.2 14.4 224 70-370 112-384 (507)
38 PRK12418 cysteinyl-tRNA synthe 99.8 4.9E-19 1.1E-23 190.3 18.3 250 71-370 9-307 (384)
39 PRK14535 cysS cysteinyl-tRNA s 99.8 1E-18 2.2E-23 196.5 20.1 239 69-370 246-553 (699)
40 PF01406 tRNA-synt_1e: tRNA sy 99.8 1.4E-19 3E-24 187.3 11.9 245 68-370 5-297 (300)
41 TIGR03447 mycothiol_MshC cyste 99.8 2.8E-18 6.1E-23 185.5 16.9 251 69-370 34-334 (411)
42 PTZ00399 cysteinyl-tRNA-synthe 99.7 3.2E-16 6.8E-21 179.1 17.5 245 69-370 58-360 (651)
43 cd00802 class_I_aaRS_core cata 99.6 1.7E-15 3.6E-20 141.7 8.1 62 261-322 78-143 (143)
44 PRK11893 methionyl-tRNA synthe 99.6 2.7E-14 5.9E-19 159.3 16.6 265 73-370 7-345 (511)
45 COG1384 LysS Lysyl-tRNA synthe 99.6 1.9E-13 4.1E-18 149.0 22.1 447 77-591 28-521 (521)
46 COG0143 MetG Methionyl-tRNA sy 99.5 2.1E-13 4.5E-18 152.7 20.5 265 76-370 14-379 (558)
47 KOG2007|consensus 99.5 2E-13 4.4E-18 147.2 14.6 230 70-349 54-337 (586)
48 cd00814 MetRS_core catalytic c 99.4 2.5E-12 5.4E-17 135.9 17.4 246 73-348 6-311 (319)
49 PRK00133 metG methionyl-tRNA s 99.4 1.8E-12 3.9E-17 149.7 16.2 269 76-370 11-376 (673)
50 TIGR00398 metG methionyl-tRNA 99.4 4.2E-12 9E-17 142.8 17.5 93 73-172 5-115 (530)
51 cd00668 Ile_Leu_Val_MetRS_core 99.4 1.1E-11 2.4E-16 130.5 16.4 225 76-348 9-304 (312)
52 PLN02610 probable methionyl-tR 99.4 3.6E-12 7.8E-17 149.0 13.9 271 76-370 26-395 (801)
53 PLN02224 methionine-tRNA ligas 99.4 1.8E-11 4E-16 139.4 18.2 266 76-370 78-412 (616)
54 PRK12268 methionyl-tRNA synthe 99.3 5.3E-12 1.2E-16 142.7 13.3 89 75-172 11-120 (556)
55 PF09334 tRNA-synt_1g: tRNA sy 99.3 2.5E-13 5.4E-18 147.4 1.0 276 72-370 4-373 (391)
56 cd00672 CysRS_core catalytic c 99.3 1.7E-11 3.8E-16 122.7 13.5 73 268-348 130-205 (213)
57 PRK12451 arginyl-tRNA syntheta 99.3 1.1E-11 2.3E-16 140.5 12.3 86 248-333 294-388 (562)
58 TIGR00456 argS arginyl-tRNA sy 99.3 1.3E-11 2.7E-16 140.1 12.8 114 248-370 298-440 (566)
59 PRK12267 methionyl-tRNA synthe 99.3 2.8E-11 6E-16 139.4 15.6 264 76-370 13-345 (648)
60 COG0018 ArgS Arginyl-tRNA synt 99.3 5.8E-11 1.3E-15 134.1 15.0 181 117-371 238-451 (577)
61 cd00812 LeuRS_core catalytic c 99.2 7.7E-11 1.7E-15 124.4 12.5 94 75-175 8-126 (314)
62 PLN02286 arginine-tRNA ligase 99.2 3.6E-10 7.7E-15 128.5 17.4 116 248-371 297-453 (576)
63 cd00674 LysRS_core_class_I cat 99.2 8.9E-10 1.9E-14 118.0 19.0 234 76-348 27-306 (353)
64 cd00806 TrpRS_core catalytic c 99.2 2.2E-10 4.8E-15 119.2 12.0 192 77-347 7-217 (280)
65 cd00817 ValRS_core catalytic c 99.1 4.2E-10 9.1E-15 122.0 13.4 90 76-172 10-135 (382)
66 cd00818 IleRS_core catalytic c 99.1 1.1E-09 2.4E-14 116.9 16.1 90 76-172 10-136 (338)
67 PF00750 tRNA-synt_1d: tRNA sy 98.9 8.2E-09 1.8E-13 110.9 13.0 86 248-333 208-305 (354)
68 PRK13208 valS valyl-tRNA synth 98.8 1.1E-07 2.5E-12 112.2 19.6 89 75-172 46-169 (800)
69 TIGR00422 valS valyl-tRNA synt 98.8 3E-07 6.4E-12 109.5 21.6 90 76-172 42-167 (861)
70 PRK05729 valS valyl-tRNA synth 98.7 3.5E-07 7.5E-12 109.1 18.8 90 76-172 45-170 (874)
71 KOG0436|consensus 98.6 4.9E-07 1.1E-11 96.7 13.0 261 77-370 49-390 (578)
72 PF01921 tRNA-synt_1f: tRNA sy 98.6 1.6E-07 3.5E-12 100.3 9.3 230 77-346 32-311 (360)
73 TIGR00233 trpS tryptophanyl-tR 98.3 5.3E-06 1.1E-10 88.5 12.6 189 77-347 10-218 (328)
74 PRK12285 tryptophanyl-tRNA syn 98.2 1.3E-05 2.8E-10 86.7 12.3 184 77-346 74-276 (368)
75 PRK12556 tryptophanyl-tRNA syn 98.2 2.2E-05 4.7E-10 83.9 13.4 199 77-347 11-227 (332)
76 PRK08560 tyrosyl-tRNA syntheta 98.1 0.00014 3.1E-09 77.7 17.9 194 72-346 31-239 (329)
77 COG0180 TrpS Tryptophanyl-tRNA 98.1 4E-05 8.6E-10 80.9 12.5 196 77-348 13-225 (314)
78 cd00395 Tyr_Trp_RS_core cataly 97.9 8.9E-05 1.9E-09 77.3 12.6 73 272-347 152-226 (273)
79 PRK12282 tryptophanyl-tRNA syn 97.9 8.6E-05 1.9E-09 79.5 12.0 193 77-346 10-220 (333)
80 cd00805 TyrRS_core catalytic c 97.9 6.6E-05 1.4E-09 78.0 10.5 196 77-347 8-222 (269)
81 PRK06039 ileS isoleucyl-tRNA s 97.8 0.00011 2.5E-09 88.8 12.4 161 76-264 50-259 (975)
82 TIGR00392 ileS isoleucyl-tRNA 97.8 6.7E-05 1.4E-09 89.7 10.1 89 76-173 45-172 (861)
83 PRK05743 ileS isoleucyl-tRNA s 97.7 8.6E-05 1.9E-09 89.2 9.4 88 76-172 58-180 (912)
84 TIGR00396 leuS_bact leucyl-tRN 97.7 6.1E-05 1.3E-09 89.7 7.6 92 74-172 36-147 (842)
85 PTZ00126 tyrosyl-tRNA syntheta 97.7 0.0021 4.6E-08 70.1 18.8 84 258-347 195-283 (383)
86 PRK00390 leuS leucyl-tRNA synt 97.7 5.9E-05 1.3E-09 89.4 7.1 91 75-172 40-150 (805)
87 PRK12284 tryptophanyl-tRNA syn 97.7 0.00045 9.7E-09 75.9 12.8 195 77-347 10-227 (431)
88 PLN02943 aminoacyl-tRNA ligase 97.6 0.0006 1.3E-08 82.4 14.6 123 76-224 97-258 (958)
89 PLN02563 aminoacyl-tRNA ligase 97.6 0.00011 2.5E-09 88.2 7.9 93 73-172 116-229 (963)
90 PRK12283 tryptophanyl-tRNA syn 97.6 0.0024 5.2E-08 69.7 16.9 89 77-181 10-105 (398)
91 PTZ00419 valyl-tRNA synthetase 97.6 0.00021 4.6E-09 86.7 9.7 90 76-172 69-195 (995)
92 PRK14900 valS valyl-tRNA synth 97.6 0.00026 5.5E-09 86.3 9.9 125 76-224 57-220 (1052)
93 PF00579 tRNA-synt_1b: tRNA sy 97.5 0.00021 4.5E-09 74.9 7.5 202 71-347 5-224 (292)
94 PRK13804 ileS isoleucyl-tRNA s 97.5 0.00033 7.2E-09 84.6 9.9 88 76-172 63-188 (961)
95 PLN02843 isoleucyl-tRNA synthe 97.5 0.00032 6.9E-09 84.9 9.7 88 76-172 41-164 (974)
96 PLN02486 aminoacyl-tRNA ligase 97.5 0.0025 5.5E-08 69.5 15.4 68 275-348 221-292 (383)
97 PTZ00427 isoleucine-tRNA ligas 97.4 0.00034 7.4E-09 85.8 9.0 124 76-225 111-276 (1205)
98 COG0495 LeuS Leucyl-tRNA synth 97.4 0.00015 3.3E-09 85.1 5.6 94 72-172 39-152 (814)
99 KOG0435|consensus 97.3 0.00018 3.8E-09 81.4 4.5 96 70-172 60-175 (876)
100 PRK00927 tryptophanyl-tRNA syn 97.3 0.0014 3E-08 70.3 10.6 192 77-347 9-221 (333)
101 PRK13354 tyrosyl-tRNA syntheta 97.3 0.0023 5E-08 70.5 12.3 85 259-346 168-257 (410)
102 PRK05912 tyrosyl-tRNA syntheta 97.3 0.0037 8.1E-08 68.8 13.9 86 259-347 170-260 (408)
103 PLN02882 aminoacyl-tRNA ligase 97.2 0.0012 2.5E-08 81.3 10.3 88 76-172 47-173 (1159)
104 PLN02381 valyl-tRNA synthetase 97.2 0.0012 2.7E-08 80.5 10.3 89 76-173 137-264 (1066)
105 TIGR00395 leuS_arch leucyl-tRN 97.1 0.00078 1.7E-08 81.3 7.5 60 302-370 605-666 (938)
106 PLN02886 aminoacyl-tRNA ligase 96.8 0.009 1.9E-07 65.2 11.6 88 77-181 54-148 (389)
107 COG0525 ValS Valyl-tRNA synthe 96.7 0.0098 2.1E-07 70.4 11.3 126 76-225 42-204 (877)
108 PF00133 tRNA-synt_1: tRNA syn 96.6 0.0032 6.9E-08 72.6 6.5 125 76-226 32-196 (601)
109 PTZ00348 tyrosyl-tRNA syntheta 96.3 0.05 1.1E-06 63.5 13.8 84 258-347 160-248 (682)
110 KOG4426|consensus 96.3 0.047 1E-06 59.7 12.4 122 250-378 369-529 (656)
111 TIGR00395 leuS_arch leucyl-tRN 96.3 0.013 2.8E-07 71.1 9.3 88 76-172 34-167 (938)
112 PLN02959 aminoacyl-tRNA ligase 96.2 0.013 2.8E-07 71.9 8.4 43 304-348 706-749 (1084)
113 TIGR00234 tyrS tyrosyl-tRNA sy 95.6 0.18 3.8E-06 55.2 13.3 65 259-323 163-227 (377)
114 PRK06039 ileS isoleucyl-tRNA s 95.3 0.051 1.1E-06 66.3 8.8 90 272-370 544-638 (975)
115 PRK12300 leuS leucyl-tRNA synt 95.2 0.058 1.2E-06 65.2 9.0 86 273-370 530-623 (897)
116 PLN02907 glutamate-tRNA ligase 95.2 0.045 9.8E-07 64.4 7.6 227 152-429 260-520 (722)
117 TIGR00392 ileS isoleucyl-tRNA 95.1 0.061 1.3E-06 64.7 8.7 88 273-370 564-656 (861)
118 PLN02882 aminoacyl-tRNA ligase 94.5 0.11 2.4E-06 64.3 9.0 89 274-370 568-661 (1159)
119 COG0525 ValS Valyl-tRNA synthe 94.5 0.11 2.3E-06 61.9 8.3 88 273-370 478-571 (877)
120 PRK05743 ileS isoleucyl-tRNA s 94.3 0.15 3.2E-06 61.9 9.1 89 272-370 544-637 (912)
121 PLN02843 isoleucyl-tRNA synthe 93.7 0.2 4.4E-06 61.1 8.7 83 277-369 568-664 (974)
122 PF00133 tRNA-synt_1: tRNA syn 93.6 0.15 3.3E-06 59.0 7.2 75 272-348 513-592 (601)
123 PRK13804 ileS isoleucyl-tRNA s 93.4 0.25 5.5E-06 60.2 8.9 84 276-370 586-675 (961)
124 PLN02943 aminoacyl-tRNA ligase 93.3 0.2 4.2E-06 61.1 7.8 57 304-370 571-628 (958)
125 PRK14900 valS valyl-tRNA synth 93.0 0.25 5.3E-06 60.9 8.1 59 304-370 525-584 (1052)
126 COG0495 LeuS Leucyl-tRNA synth 91.8 0.099 2.2E-06 62.0 2.5 75 270-348 523-610 (814)
127 COG0060 IleS Isoleucyl-tRNA sy 91.5 0.48 1E-05 57.1 7.8 124 76-225 58-220 (933)
128 KOG0432|consensus 91.0 0.73 1.6E-05 54.6 8.3 90 77-173 85-211 (995)
129 PTZ00402 glutamyl-tRNA synthet 90.6 0.27 5.8E-06 56.6 4.3 222 152-429 99-360 (601)
130 PTZ00427 isoleucine-tRNA ligas 90.0 0.78 1.7E-05 57.2 7.9 87 274-368 674-765 (1205)
131 TIGR00396 leuS_bact leucyl-tRN 89.8 0.55 1.2E-05 56.6 6.3 91 271-370 518-650 (842)
132 PRK12300 leuS leucyl-tRNA synt 89.6 0.83 1.8E-05 55.5 7.7 82 82-172 1-128 (897)
133 PTZ00419 valyl-tRNA synthetase 88.8 0.82 1.8E-05 56.1 7.0 75 273-348 538-653 (995)
134 PLN02959 aminoacyl-tRNA ligase 88.1 1.3 2.8E-05 54.9 8.0 31 76-106 54-86 (1084)
135 PRK00390 leuS leucyl-tRNA synt 87.9 1.1 2.4E-05 53.8 7.0 84 272-370 522-616 (805)
136 PLN02381 valyl-tRNA synthetase 86.3 1.8 4E-05 53.5 7.9 76 272-348 607-723 (1066)
137 PLN02563 aminoacyl-tRNA ligase 82.4 2.3 5.1E-05 52.0 6.3 31 317-348 723-754 (963)
138 KOG0433|consensus 76.3 17 0.00036 43.0 10.2 119 45-173 33-188 (937)
139 COG0060 IleS Isoleucyl-tRNA sy 76.2 1.3 2.7E-05 53.6 1.5 54 305-367 590-644 (933)
140 cd02156 nt_trans nucleotidyl t 72.8 8.2 0.00018 34.0 5.5 37 74-115 3-40 (105)
141 COG0162 TyrS Tyrosyl-tRNA synt 71.3 3.4 7.3E-05 45.7 3.2 62 263-324 170-231 (401)
142 KOG0437|consensus 70.3 6.5 0.00014 46.3 5.2 60 76-138 53-118 (1080)
143 KOG2713|consensus 59.4 15 0.00033 38.8 5.0 71 76-153 20-99 (347)
144 PF12085 DUF3562: Protein of u 53.3 40 0.00088 28.0 5.5 56 533-588 3-58 (66)
145 PRK05347 glutaminyl-tRNA synth 52.7 9.7 0.00021 43.8 2.6 11 25-35 29-39 (554)
146 KOG1247|consensus 46.6 79 0.0017 35.3 8.1 91 72-169 18-128 (567)
147 KOG0432|consensus 45.1 19 0.00042 43.2 3.5 37 288-324 562-600 (995)
148 KOG0433|consensus 38.3 27 0.00059 41.3 3.2 66 278-345 571-647 (937)
149 KOG1195|consensus 35.6 49 0.0011 37.7 4.6 94 248-348 294-397 (567)
150 TIGR01527 arch_NMN_Atrans nico 34.9 1.2E+02 0.0025 29.6 6.6 135 80-235 9-154 (165)
151 COG4720 Predicted membrane pro 34.5 33 0.00071 33.8 2.7 31 71-101 24-56 (177)
152 KOG3349|consensus 33.7 34 0.00075 33.1 2.6 20 158-177 117-136 (170)
153 cd02156 nt_trans nucleotidyl t 33.1 20 0.00044 31.5 1.0 45 276-322 59-105 (105)
154 PF15522 Toxin_42: Putative to 31.8 44 0.00096 32.3 3.0 38 557-594 14-51 (205)
155 KOG2361|consensus 31.7 36 0.00077 35.4 2.6 96 169-266 99-219 (264)
156 PRK14703 glutaminyl-tRNA synth 29.8 36 0.00078 40.9 2.6 46 530-579 661-706 (771)
157 KOG2145|consensus 26.2 60 0.0013 34.6 3.1 51 294-348 253-305 (397)
158 cd00498 Hsp33 Heat shock prote 23.5 1E+02 0.0023 32.2 4.4 41 164-220 223-263 (275)
159 PF10096 DUF2334: Uncharacteri 22.2 1.9E+02 0.0041 29.7 6.0 65 103-168 1-68 (243)
160 PF08671 SinI: Anti-repressor 21.9 1.1E+02 0.0024 21.5 2.8 20 327-346 9-28 (30)
161 PRK00114 hslO Hsp33-like chape 21.9 1.1E+02 0.0025 32.3 4.4 37 164-216 229-265 (293)
162 KOG0437|consensus 20.9 37 0.00081 40.3 0.5 72 272-348 662-741 (1080)
163 PF06971 Put_DNA-bind_N: Putat 20.9 1.4E+02 0.0029 23.5 3.4 30 150-182 7-36 (50)
164 KOG0434|consensus 20.7 41 0.00088 39.7 0.7 42 304-346 588-630 (1070)
No 1
>KOG1149|consensus
Probab=100.00 E-value=7.3e-142 Score=1108.56 Aligned_cols=479 Identities=45% Similarity=0.805 Sum_probs=440.9
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||++|||||||||||++||+|||||||||++|.++|++++|.++|+|+||+|||||.+|||||||.||+|+++|++
T Consensus 44 GfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~k 123 (524)
T KOG1149|consen 44 GFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKK 123 (524)
T ss_pred cceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
||+.|++.|+||+||||+++++.+|+++.+.++.|+||++|+++|.+|+..+++.|.|+|||||+|.....|+|+|+|+|
T Consensus 124 yae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~~lakg~pf~iRFrl~~~~~~f~DLvyG~v 203 (524)
T KOG1149|consen 124 YAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQKLAKGTPFTIRFRLPKESPPFTDLVYGKV 203 (524)
T ss_pred HHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHHHHhcCCCeeEEEecCCCCCChhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.++...+.|||||+||||+||||||||||||+|||||||||+||++||+||++||+||||++|.|+|+|||+|+||+|||
T Consensus 204 ~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaHlpLl~n~d~sKLS 283 (524)
T KOG1149|consen 204 NHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAHLPLLLNPDGSKLS 283 (524)
T ss_pred hccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHhCCCCCceeeeeeeecCCcchhh
Confidence 99987779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+|+++|..|+++||+|||++||++++|||. ..+.+.|||+|||+ .
T Consensus 284 KRqgD~~vs~~~e~G~LPeallN~ial~Gwg~-----~~~~~f~sl~eLie----------------------------q 330 (524)
T KOG1149|consen 284 KRQGDASVSHYREQGYLPEALLNYIALLGWGF-----RTENEFFSLEELIE----------------------------Q 330 (524)
T ss_pred hhcCcchHHHHHHcCCChHHHHHHHHHcCCCc-----ccccccccHHHHHH----------------------------H
Confidence 99999999999999999999999999999998 46679999999999 9
Q ss_pred ccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccchH
Q psy16872 400 FDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQ 479 (605)
Q Consensus 400 F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l~ 479 (605)
|++++++++++++|.+||.|+|++||++...++ ....++++.+++.+.+.++.+....+..++.+++.+.+++++.++
T Consensus 331 F~i~~ltk~~a~ld~ekL~~~Nr~~lqr~~~n~--s~l~~lv~~~q~~l~e~y~~s~~~~~~~~~k~iL~l~~~~~~~l~ 408 (524)
T KOG1149|consen 331 FSIERLTKSNAILDSEKLRFLNRLHLQRLISNE--SKLRELVDKLQPLLKEAYGTSSDNEAKEVLKDILLLVTGSLKRLQ 408 (524)
T ss_pred hchhhhcccccccCHHHHHHHHHHHHhhhccCh--HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHhccchhHHH
Confidence 999999999999999999999999999887776 678899999999999988755556678899999999999999999
Q ss_pred hhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhc-cCCCCChhhHHHHHHHHHHHhCCChhhHHHHH
Q psy16872 480 DLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQ-TCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558 (605)
Q Consensus 480 dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~-~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pL 558 (605)
||.+. +.|||.+|.........++ +.+..+++.++..+. ...+++.+.++..+++++++++.|.+.+|++|
T Consensus 409 dl~s~-~~~~f~~P~d~qa~~d~~s-------e~~~~~ia~l~~~l~~~~~~~~~~e~n~~lk~~a~~~~~k~k~~~~~l 480 (524)
T KOG1149|consen 409 DLLSE-LSFFFTRPSDKQAVEDLLS-------ENVASLIAHLLKILNPSALELEQDEWNSSLKAFAKEHQRKLKKLMKLL 480 (524)
T ss_pred Hhhhh-hheeeeccchhhHHHHHhh-------HhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 99994 9999999953322111111 112111222222221 13467889999999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhhcccccc
Q psy16872 559 RTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRTVKNST 601 (605)
Q Consensus 559 RiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~~~~~~~ 601 (605)
|+||+|+.+||+++++|++||++++.+||+.++......+|+-
T Consensus 481 R~aL~G~~~Gp~iaemi~~lGk~e~~eRl~~~l~~~~~~l~k~ 523 (524)
T KOG1149|consen 481 RVALSGKLPGPPIAEMIELLGKKEVEERLKELLESLWLELNKD 523 (524)
T ss_pred HHHHhCCCCCCcHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999988877764
No 2
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=4.8e-130 Score=1070.78 Aligned_cols=463 Identities=32% Similarity=0.555 Sum_probs=414.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLAL 156 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~ 156 (605)
+|||+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||||.+||+||||+||+|+++
T Consensus 53 SPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QSeR~~~ 132 (535)
T PLN02627 53 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAI 132 (535)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeeeccHHH
Confidence 44499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccc
Q psy16872 157 YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLV 235 (605)
Q Consensus 157 Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v 235 (605)
|+++|++|+++|+||+||||+++++++|+.+.+.|.+|.|||+||+++++|+.+++.+|.+++||||+|. +.+.|+|+|
T Consensus 133 Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~i 212 (535)
T PLN02627 133 YKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLI 212 (535)
T ss_pred HHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEeee
Confidence 9999999999999999999999999999988888889999999999999999999999999999999995 678999999
Q ss_pred cceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC
Q psy16872 236 YGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG 315 (605)
Q Consensus 236 ~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg 315 (605)
+|++++++. ..+||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||+|++|
T Consensus 213 ~G~i~~~~~-~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g 291 (535)
T PLN02627 213 RGEVSWNTD-TLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR 291 (535)
T ss_pred eeeeeeccc-cCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC
Confidence 999999864 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccc
Q psy16872 316 SKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQT 395 (605)
Q Consensus 316 ~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (605)
+|||||+|+++|.+||++||+|+||+||++++||+. .+++|+||++||++
T Consensus 292 ~KLSKR~~~~~v~~~r~~G~~PeAi~nyla~LGws~-----~~~~e~~~~~eli~------------------------- 341 (535)
T PLN02627 292 SKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWND-----GTENEIFTLEELVE------------------------- 341 (535)
T ss_pred CccccccCCccHHHHHHCCCCHHHHHHHHHHhCCCC-----CCCCCcCCHHHHHH-------------------------
Confidence 999999999999999999999999999999999987 45679999999999
Q ss_pred ccccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccc
Q psy16872 396 FFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERI 475 (605)
Q Consensus 396 ~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri 475 (605)
.|++++|+++|++||.+||+|||++||++++.+ ++++.+.+++.+.... ...+.+|+.+++.++++|+
T Consensus 342 ---~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~-------el~~~~~p~l~~~~~~--~~~~~~~l~~~~~l~~~ri 409 (535)
T PLN02627 342 ---KFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEE-------ELVKLVGERWKSAGIL--KESDGSFVKEAVELLKDGI 409 (535)
T ss_pred ---hCCHhhCCCcccccCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHcCCC--ccccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999987533 4888888887643110 1124589999999999999
Q ss_pred cchHhhhhhhhhccccCC---CcCccCCCCccchhhHHHHHHHHHHHhhhhhhcc-----CCCCChhhHHHHHHHHHHHh
Q psy16872 476 FKLQDLVGKDFAFIWVKP---SIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQT-----CDPFTRDSLATPLREFSTEQ 547 (605)
Q Consensus 476 ~~l~dl~~~~~~ff~~~p---~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~-----~e~~~~e~i~~~lk~~~~e~ 547 (605)
.+|.|+++. ..|||..+ .+.++.. .+...+.+.+++..+...|++ ..+|+.++++..+++++++.
T Consensus 410 ~~L~d~~~~-~~~~f~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~e~~ 482 (535)
T PLN02627 410 ELVTDADKE-LLNLLSYPLAATLSSPEA------KTVVEDNFSEVADALIAAYDSGELAAALEEGHDGWQKWVKAFGKAL 482 (535)
T ss_pred CcHHHHHHH-HHHHhcCCCccccChHHH------HHhhhHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHh
Confidence 999999998 67877632 2221110 111112333445444433322 23478999999999999999
Q ss_pred CCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 548 GVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 548 giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
|+|++++|||||+||||+.+||+|+++|++|||+++++||-.
T Consensus 483 g~k~k~l~~PlR~AlTG~~~gP~l~~~~~lLGke~~~~Rl~~ 524 (535)
T PLN02627 483 KRKGKRLFMPLRVALTGKMHGPDVGESLVLLHKAGTPDSVTE 524 (535)
T ss_pred CCCHHHhHHHHHHHHcCCCCCCCHHHHHHHhCHHHHHHHhhc
Confidence 999999999999999999999999999999999999999964
No 3
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.8e-124 Score=1023.80 Aligned_cols=460 Identities=39% Similarity=0.668 Sum_probs=417.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||||||++||+|||||||||++|+++++++.|+++|+||||+|||+|.+| +||||+||+|+++|++
T Consensus 15 G~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~-~~gpy~QS~r~~~y~~ 93 (476)
T PRK01406 15 GYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGG-PYGPYRQSERLDIYKE 93 (476)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccC-CCCceehhcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC-ccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH-TESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~-~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||+|||++.|+.+.+.|.+|.|+|+||+++.+|+.+++.+|+++|||||+|.. .+.|+|+|+|+
T Consensus 94 ~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~ 173 (476)
T PRK01406 94 YAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGE 173 (476)
T ss_pred HHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceEEEEeccce
Confidence 99999999999999999999999999998889999999999999999999999999999999999964 88999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+.+++. ..+|+||+|+||+||||||+|||||+|+|||||||+||++|||+|+++|+||||++|.|+|+|+|+|.+|+||
T Consensus 174 ~~~~~~-~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g~kl 252 (476)
T PRK01406 174 IEFPNS-ELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDGKKL 252 (476)
T ss_pred EEeccc-cCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCCCcc
Confidence 999865 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|++||++||.|+|+.||++++||+. +.+++++++++++
T Consensus 253 SKR~g~~~l~~l~~~G~~p~Ai~n~l~~lG~s~------~~~e~~~~~~~i~---------------------------- 298 (476)
T PRK01406 253 SKRHGATSVEQYRDMGYLPEALLNYLALLGWSH------GDQEIFSLEELIE---------------------------- 298 (476)
T ss_pred cCcCCccCHHHHHHCCCCHHHHHHHHHHhCCCC------CccccCCHHHHHH----------------------------
Confidence 999999999999999999999999999999885 4678999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHH-HHHhhCCCCCCCCCHHHHHHHHHHhhccccc
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQ-HIVNEFPNSSLQIDDDYLNYVLCWASERIFK 477 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~ 477 (605)
.|++++++++|+.||.+||.|+|++||++++.+ ++++.+.+ .+.... ....+++++.+++.++++|+++
T Consensus 299 ~f~l~~~~~s~~~fd~~kL~~~N~~~i~~~~~~-------~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ 368 (476)
T PRK01406 299 LFDLERVSKSPARFDIKKLDWLNGHYIRELDPE-------ELAELLLPWHLEQEG---LDTEDGPYLEKVVPLLKERAKT 368 (476)
T ss_pred hcChhhCCCCCccccHHHHHHHHHHHHHhCCHH-------HHHHHHhHHHhhhcc---cccccHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999987533 47777766 443211 1223568999999999999999
Q ss_pred hHhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 478 LQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 478 l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
++|+.+. ..|||..|....+.. . .+.+.+....+|.++.+.|+..++|+.++|++.+++++++.|+|+|++|+|
T Consensus 369 l~d~~~~-~~~ff~~~~~~~~~~--~---~~~l~~~~~~~L~~l~~~L~~l~~~~~e~i~~~i~~iak~~gik~k~lf~p 442 (476)
T PRK01406 369 LKELAEL-ARFFFEDFPEYDEDA--A---KKHLKEVAREVLEALLEKLEALEEWTAEAIEAAIKAVAEELGLKGGKLFMP 442 (476)
T ss_pred HHHHHHH-HHHHhcCCcccChHH--H---HHhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999998 678887664321110 0 011112335566666777776678999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~~al 591 (605)
||+||||+.+||+|+++|++|||++|++||+.|+
T Consensus 443 LR~ALtG~~~GP~L~~il~lLGke~vl~RL~~al 476 (476)
T PRK01406 443 LRVALTGRTVGPPLFESMELLGKEEVLARLRKAL 476 (476)
T ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 4
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.4e-123 Score=1003.67 Aligned_cols=433 Identities=30% Similarity=0.499 Sum_probs=393.6
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||||||++||+|||||||||++|+++++++.|+++|+||||+||++ |+||+|++.|++
T Consensus 13 G~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~---------y~QSer~~~y~~ 83 (445)
T PRK12558 13 GYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRT---------FRQSDRFDRYDE 83 (445)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCcc---------ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999984 899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|+||+||||++||+++|+.+.+.|.+|.|+|+||+++.+|+.++..+|.+++||||++.+.+.|+|+|+|.+
T Consensus 84 ~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~ 163 (445)
T PRK12558 84 AAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQ 163 (445)
T ss_pred HHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEe
Confidence 99999999999999999999999999988888889999999999999999999999999999999878889999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||++.+|+|||
T Consensus 164 ~~~~~-~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g~KLS 242 (445)
T PRK12558 164 SIDAA-SLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADGKGLS 242 (445)
T ss_pred ecccc-cCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCccccc
Confidence 99865 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+|+++|.+||++||+||||+||++++||+. .++++||++||++ .
T Consensus 243 KR~g~~sv~~~r~~G~~Peai~n~la~lG~s~------~~~e~~~~~eli~----------------------------~ 288 (445)
T PRK12558 243 KRLGGLSIRSLREDGIEPMAIASLLARLGTSD------PVEPYTSMEELAE----------------------------S 288 (445)
T ss_pred ccCCCcCHHHHHHCCCCHHHHHHHHHHHcCCC------CCcccCCHHHHHH----------------------------h
Confidence 99999999999999999999999999999986 3468999999999 9
Q ss_pred ccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccchH
Q psy16872 400 FDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQ 479 (605)
Q Consensus 400 F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l~ 479 (605)
||+++|+++|++||.+||.|||++||++++.+ ++++.+.+++.+. .+...++.++++|++++.
T Consensus 289 F~l~~~~~~~~~fd~~KL~w~N~~~i~~~~~~-------~l~~~~~~~~~~~----------~~~~~~~~l~~~r~~~l~ 351 (445)
T PRK12558 289 FDLSSFSRAPAKFDPEDLERLNARLLHALPFE-------AVKDRLAALGIPG----------EAAEAFWLAVRGNLDKLS 351 (445)
T ss_pred CCHhhCCCccccCCHHHHHHHHHHHHHhCCHH-------HHHHHHHHhhccc----------cccHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999987533 4777776655311 012246699999999999
Q ss_pred hhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHH
Q psy16872 480 DLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLR 559 (605)
Q Consensus 480 dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLR 559 (605)
|+.+. ..|||..+... .. +....++..+++.|+. ++|+.+++++.+++++++.|+|++++|||||
T Consensus 352 e~~~~-~~~ff~~~~~~------~~-------~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~g~k~~~~~~plR 416 (445)
T PRK12558 352 DAADW-WQIVHGPITPV------IL-------EEDRAFLKQAAALLPE-GPWDEDTWKAWTAAVKEATGRKGKALFMPLR 416 (445)
T ss_pred HHHHH-HHHHcCCCccc------cc-------hhHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99998 67777654311 00 1122344455555653 6799999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHhCHHHHHHHHH
Q psy16872 560 TSLSGLKQGPSVGEMMEILTKENTIRRLR 588 (605)
Q Consensus 560 iALTG~~~GP~L~eim~lLGkee~l~RL~ 588 (605)
+||||+.+||+|+++|++|||++|++||.
T Consensus 417 ~altG~~~gP~l~~~~~~lGk~~~l~Rl~ 445 (445)
T PRK12558 417 LALTGREHGPELAKLLPLIGRERAIARLT 445 (445)
T ss_pred HHHcCCCCCCCHHHHHHHhChHHHHhhcC
Confidence 99999999999999999999999999983
No 5
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.8e-120 Score=991.34 Aligned_cols=449 Identities=31% Similarity=0.539 Sum_probs=398.6
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 15 G~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~--------py~QSeR~~~Y~~ 86 (513)
T PRK14895 15 GFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGE--------VIFQSKRNNLYKE 86 (513)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCC--------ceeEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||+++|+++|+.+.+.|..|.|+|+||++++++. ..|.+++||||+|. +.+.|+|+|+|.
T Consensus 87 ~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~----~~~~~~~iR~k~p~~~~~~~~D~v~G~ 162 (513)
T PRK14895 87 AALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY----PTDIKPVIRLKTPREGSITIHDTLQGE 162 (513)
T ss_pred HHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh----hcCCCeeEEEEcCCCCceEEEeecccc
Confidence 9999999999999999999999999988888888999999999998753 35789999999995 578999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+.+++. ..+|+||+|+||.||||||+|||||+|||||||||+||++|||+|+++|+||||++|.|+|+|+|+|.+|+||
T Consensus 163 ~~~~~~-~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g~KL 241 (513)
T PRK14895 163 VVIENS-HIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADGAKL 241 (513)
T ss_pred eecccc-cCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCCCcc
Confidence 999864 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|.+||++||+|+||+|||++||||. +.+|+||++||++
T Consensus 242 SKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~------~~~e~~~~~el~~---------------------------- 287 (513)
T PRK14895 242 SKRHGALGIEAYKDMGYLPESLCNYLLRLGWSH------GDDEIISMTQAID---------------------------- 287 (513)
T ss_pred ccccCchhHHHHHHCCCCHHHHHHHHHHhCCCC------CCcCCCCHHHHHh----------------------------
Confidence 999999999999999999999999999999986 3579999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCC------------------------C
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFP------------------------N 454 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~------------------------~ 454 (605)
.|++++|+++|++||++||.|||++||+.++.+ ++++.+.+++.+... .
T Consensus 288 ~F~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~-------el~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (513)
T PRK14895 288 WFNLDSLGKSPSKLDFAKMNSLNAHYLRMLDND-------SLTSKTVEILEQNYNKLLRKLAYREEFGGNTERSTAAYID 360 (513)
T ss_pred hCCHHhCcCCcCcCCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 999999999999999999999999999987533 466666666653110 0
Q ss_pred -------C----------------CCCCCHHHHHHHHHHhhccccchHhhhhhhhhccccC-CCcCccCCCCccchhhHH
Q psy16872 455 -------S----------------SLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVK-PSIEHLSQHPVESYGKVM 510 (605)
Q Consensus 455 -------~----------------~~~~~~~~l~~vl~l~~~ri~~l~dl~~~~~~ff~~~-p~~~~~~~~~~~~~~~~~ 510 (605)
. ......+|+.+++.++++|+++|.|+++. ..|||.. |...+... .+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~r~~~l~d~~~~-~~~~f~~~~~~~~~~~------~~~~ 433 (513)
T PRK14895 361 IREDASTGLTYKLPLAVELPKKFKVSEQEIGYIKQAMPSLLVRSETLLELTRL-AQIYLVDSPIIYSQDS------KEII 433 (513)
T ss_pred cccccccccccccccccccccccccccccHHHHHHHHHHHHhhcCcHHHHHHH-HHHHhCCCCccchHHH------HHhh
Confidence 0 00112478999999999999999999998 5566644 32222111 1111
Q ss_pred HHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 511 LNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 511 ~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
.+.+..+|..+.+.|++.++|+.+++++.++++++++|+|++++|||||+||||+.+||+|+++|++|||++|++||+.
T Consensus 434 ~~~~~~~l~~~~~~L~~~~~~~~e~~~~~~~~~~~~~g~k~~~l~~plR~AltG~~~gP~l~~~~~lLGke~~l~Rl~~ 512 (513)
T PRK14895 434 ENCDKNLIKQIIENLSELEQFDKESVQNKFKEIAAANDLKLNDIMKPVRALITGMTASPSVFEIAEILGKENILKRLKI 512 (513)
T ss_pred hhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhCCCHHHhHHHHHHHHcCCCCCCCHHHHHHHhCHHHHHHHHhh
Confidence 2234455666667777667899999999999999999999999999999999999999999999999999999999973
No 6
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-118 Score=964.53 Aligned_cols=413 Identities=30% Similarity=0.518 Sum_probs=373.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+||| ||+||+|+++|++
T Consensus 10 G~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe---------~y~QSeR~~~Y~~ 80 (433)
T PRK12410 10 GDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDK---------LVYQSENLKFHRQ 80 (433)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCC---------CeehhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 5999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
+|++|+++|+||+||||++++++.|+.+.+.|.+++|+|+||+++.+|+ +..|.++|||||+|++.+.|+|.|+|++
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~---~~~g~~~~iR~k~p~~~~~f~D~v~G~i 157 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV---LNCNKPFVVRLKKPNHTMSFTDAIKGEV 157 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH---HhcCCCeEEEEEcCCCceeeeeccceeE
Confidence 9999999999999999999999999888888888999999999999986 5679999999999988899999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCC-CcEEEecceecCCCccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTP-PKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~-P~f~H~plil~~dg~KL 318 (605)
++++ ...+||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++ |.|+|+|||+|.+|+||
T Consensus 158 ~~~~-~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g~KL 236 (433)
T PRK12410 158 SFEP-DEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEGKKM 236 (433)
T ss_pred Eecc-ccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCCCee
Confidence 9985 556899999999999999999999999999999999999999999999999999986 59999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|.+||++||+|+||+||++++||+. .+|+||++||++
T Consensus 237 SKR~~~~~v~~~r~~G~~PeAi~n~l~~lG~~~-------~~e~~~~~eli~---------------------------- 281 (433)
T PRK12410 237 SKRDNASSVKWLLEQGFLPSAIANYLILLGNKT-------PKEIFTLEEAIE---------------------------- 281 (433)
T ss_pred ecccChhhHHHHHHCCCCHHHHHHHHHHhCCCC-------cccccCHHHHHH----------------------------
Confidence 999999999999999999999999999999764 279999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccch
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKL 478 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l 478 (605)
.|++++|+++|++||.+||.|+|++||+.++.+ ++++.+.. ..+++.+++.++++|++++
T Consensus 282 ~F~~~~i~~~~~~~d~~kL~~~N~~~i~~~~~~-------~l~~~~~~-------------~~~~~~~~~~l~~~r~~~l 341 (433)
T PRK12410 282 WFDIEKISKSPAKFDLKKLRFINREHLKMLDDE-------RLSKLLGF-------------KDKDLGGLAKLYLQEASTL 341 (433)
T ss_pred hCCHhhCCCccccCCHHHHHHHHHHHHHhCCHH-------HHHHHHhh-------------hhHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999999999987533 35555411 1257899999999999999
Q ss_pred HhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHH
Q psy16872 479 QDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558 (605)
Q Consensus 479 ~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pL 558 (605)
+|+++. ..|||..+.+.+ .. +..+..+.+.+.. .+.| +++++++++++++.|+|+|++||||
T Consensus 342 ~d~~~~-~~~~f~~~~~~~--------~~----~~~~~~l~~~l~~---~~~~--~~~~~~~~~~~~~~g~k~~~~~~pl 403 (433)
T PRK12410 342 NELKEK-IDLIFSPKDINE--------EF----KEECKILKEALKS---MDFF--EDFEEFKKELMQKSGLKGKKFFKPL 403 (433)
T ss_pred HHHHHH-HHHHcCCCccch--------hh----HHHHHHHHHHHHc---CCcH--HHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999998 678876543221 01 1122333333333 3334 9999999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHh
Q psy16872 559 RTSLSGLKQGPSVGEMMEIL 578 (605)
Q Consensus 559 RiALTG~~~GP~L~eim~lL 578 (605)
|+||||+.+||+|+++|++|
T Consensus 404 R~AltG~~~gP~l~~~l~ll 423 (433)
T PRK12410 404 RILLTGNEHGPELSDIYPYI 423 (433)
T ss_pred HHHHcCCCCCCCHHHHHHHH
Confidence 99999999999999999998
No 7
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=2.3e-116 Score=964.76 Aligned_cols=455 Identities=37% Similarity=0.650 Sum_probs=412.5
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 12 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~--------~~~QS~r~~~y~~ 83 (470)
T TIGR00464 12 GYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEG--------PYYQSQRLDIYKK 83 (470)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCC--------eeehhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC-ccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH-TESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~-~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||+++++++|+++.+.|..|.|+|+||+++.+|+.++..+|.++|||||+|.. .+.|+|+|+|+
T Consensus 84 ~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~G~ 163 (470)
T TIGR00464 84 YAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGE 163 (470)
T ss_pred HHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecccce
Confidence 99999999999999999999999999888888899999999999999999888999999999999964 58999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+++++ ...+|+||+|+||+||||||+|||||+|||||||||+||+++||+|+++|++|||+.|.|+|+|+++|.+|+||
T Consensus 164 ~~~~~-~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g~kL 242 (470)
T TIGR00464 164 ITFQN-SELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDGKKL 242 (470)
T ss_pred EEecC-ccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCCccc
Confidence 99986 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|++|+++||.|+|+.||++++||+. ...+++++++++++
T Consensus 243 SKR~g~~~l~~l~~~g~~p~a~~~~~~~lG~~~-----~~~~e~~~~~~~i~---------------------------- 289 (470)
T TIGR00464 243 SKRDGATSIMQFKEQGYLPEALINYLALLGWSP-----PDDQEFFSLEELIE---------------------------- 289 (470)
T ss_pred cccCCCccHHHHHHCCCCHHHHHHHHHHcCCCC-----CCccccCCHHHHHH----------------------------
Confidence 999999999999999999999999999999876 45789999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccch
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKL 478 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l 478 (605)
.|++++++++++.||.+||.|||++||++++.+ ++++.+.+++.+.... ...+++|+.+++.++++|+.++
T Consensus 290 ~f~l~~~~~~~~~fd~~kL~~~N~~~l~~l~~~-------~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~l 360 (470)
T TIGR00464 290 IFSLNRVSKSPAKFDWKKLQWLNAHYIKELPDE-------ELFELLDPHLKSLVNT--DTLNREQLAELLLLFKERLKTL 360 (470)
T ss_pred hcCcccCCCCCCeecHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHhccc--ccccHHHHHHHHHHHHHhhccH
Confidence 999999999999999999999999999987533 4788888777654221 1234689999999999999999
Q ss_pred HhhhhhhhhccccCCCcCc-cCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 479 QDLVGKDFAFIWVKPSIEH-LSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 479 ~dl~~~~~~ff~~~p~~~~-~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
+|+.+. ..|||.+|.... ...+ +...+....+|.++++.|+..++|+.++|++.+++++++.|+|++++|+|
T Consensus 361 ~d~~~~-~~~~f~~~~~~~~~~~~------~~~~e~~~~~L~~l~~~L~~~~~~~~e~i~~~l~~iak~~g~k~k~lf~p 433 (470)
T TIGR00464 361 KEIAEL-IRLFFEDKKEVDEDAFK------KHLKKNVKEVLEALKKKLQALEEWTADEVKSAIKQIAEELGLKGKKVFMP 433 (470)
T ss_pred HHHHHH-HHHHhCCCCccCHHHHH------HhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999997 677776653222 1111 11123455667777777776678999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHH-HHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLR-DVLE 592 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~-~al~ 592 (605)
||+||||+.+||+|+++|++|||+++++||+ ++|+
T Consensus 434 LR~ALtG~~~GP~L~~~i~lLGke~~l~RL~~~~~~ 469 (470)
T TIGR00464 434 LRLALTGKGHGPDLAQILELIGKTESIKRLKAQFIA 469 (470)
T ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 5553
No 8
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-110 Score=908.29 Aligned_cols=449 Identities=35% Similarity=0.564 Sum_probs=396.1
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|++++|+++|+++|+||||+|||+ ||+||+|+++|++
T Consensus 20 G~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~--------~~~QS~r~~~Y~~ 91 (472)
T COG0008 20 GYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEG--------PYYQSERFDIYYE 91 (472)
T ss_pred CccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCc--------eeehhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999996 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCC-CCCCcCcCCCHHHHHHHHhcCCCceEEEEcC--CCccceecccc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVP-KYDNKCRNLTQEQIDEKLKENSKYCIRFKLT--NHTESWQDLVY 236 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~-~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~--~~~~~~~D~v~ 236 (605)
+|++||++|+||+||||++||+++|+.+.+.|..| .|++.|++|+.++.......|.++|||||+| .....|+|+|+
T Consensus 92 ~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~~~~~~D~v~ 171 (472)
T COG0008 92 YAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVR 171 (472)
T ss_pred HHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCCCCcccccee
Confidence 99999999999999999999999999999988878 9999999999988766655688999999999 44458999999
Q ss_pred ceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc
Q psy16872 237 GDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316 (605)
Q Consensus 237 G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~ 316 (605)
|+|.+++. ..+| |+.|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|+|++.+|+
T Consensus 172 g~i~~~~~-~~~d-v~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g~ 249 (472)
T COG0008 172 GRIVFAPK-HPDF-VILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDGK 249 (472)
T ss_pred eeEecCcc-CCcc-eeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCCC
Confidence 99999864 5688 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccc
Q psy16872 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTF 396 (605)
Q Consensus 317 KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (605)
|||||++++++.+|+..||+|+||.||++++||++. ....++|+++++++
T Consensus 250 kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~----~~~~e~f~~~~~~~-------------------------- 299 (472)
T COG0008 250 KLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYP----PEAIEIFSLEEGIK-------------------------- 299 (472)
T ss_pred eecCccCccccchhhhcCCCcHHHHHHHHHhcCCCC----hhhHHHHHHHHHHh--------------------------
Confidence 999999999999999999999999999999999884 46789999999999
Q ss_pred cccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhcccc
Q psy16872 397 FNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIF 476 (605)
Q Consensus 397 ~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~ 476 (605)
+|+++.++++++.||.+||+|+|.+||+.. +.+ .+++.+.+++.+.... .. .++++..+++.+.++
T Consensus 300 --~fd~~~~~~~~~~fd~~kL~~~n~ry~~~~-p~e------~~~~~l~~~~~~~~~~-~~-~~~e~~~~~~~l~~~--- 365 (472)
T COG0008 300 --WFDLTIVSKSPAAFDRKKLDWLNPRYMRVD-PVE------VVIENLKPHLEEEGAT-LP-LNPEMGERVVPLTKE--- 365 (472)
T ss_pred --hhhhhhhhcccccccHHHhHhhhHHHHHhC-CHH------HHHHhhhhhhhhhccc-CC-CCHHHHhhhhhhccc---
Confidence 999999999999999999999999999984 333 4667776655532211 01 168899999999999
Q ss_pred chHhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHH
Q psy16872 477 KLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMK 556 (605)
Q Consensus 477 ~l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~ 556 (605)
++.++... ..+||..+ .....+.+ ....+.+.+......+... .|+.+.+..++++.++..++|++++++
T Consensus 366 ~~~~i~~~-~~~~~~~~--~~~~~~~l------~~~~~~~~l~~~~~~l~~~-~~~~~~i~~wv~~~~~~~~vk~~~~~~ 435 (472)
T COG0008 366 TLIEIERL-DFFFFEDK--EEVRLKRL------ANVIVAEVLEKDAEGLITS-DWTKENIIHWVKAVARLFGVKGPKLFP 435 (472)
T ss_pred hHHHHhHH-HHHHhcch--HHHHHHhh------cchHHHHHHHHHHHhhhhc-cccHHHHHHHHHHHHHHhCCCCcccch
Confidence 89999987 44555433 11101111 1112344455555555533 799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHH
Q psy16872 557 LLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLE 592 (605)
Q Consensus 557 pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~ 592 (605)
|||+|+||..+||+|+++++++|++.+++||..++.
T Consensus 436 plr~a~tG~~~~p~l~~~~~~~g~~~q~~Rl~~~~~ 471 (472)
T COG0008 436 PLRVALTGGYVEPELADTIELLGKEVQFERLGYALA 471 (472)
T ss_pred hhHHHhcCCccCCCHHHHHHhhchHHHHHHHHHHhh
Confidence 999999999999999999999999999999998864
No 9
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=1.4e-93 Score=749.73 Aligned_cols=298 Identities=43% Similarity=0.773 Sum_probs=274.7
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||+||++||++||+|||||||||++|+++|+++.|+++|+||||+||+ +||+||+|+++|++
T Consensus 12 G~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~--------~~~~QS~r~~~Y~~ 83 (314)
T PF00749_consen 12 GYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDY--------GPYYQSDRLEIYQE 83 (314)
T ss_dssp SS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---ST--------CEEEGGGGHHHHHH
T ss_pred CCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCC--------eEEeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 47999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCC--CCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC-ccceecccc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSG--LVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH-TESWQDLVY 236 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~--~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~-~~~~~D~v~ 236 (605)
+|++|+++|+||+||||+++|++.|+.+.+.+ ..+.|++.||+++++|+.+.+..|.+++||||+|.. .+.|+|+|.
T Consensus 84 ~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~ 163 (314)
T PF00749_consen 84 AAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVR 163 (314)
T ss_dssp HHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTT
T ss_pred HHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccCcc
Confidence 99999999999999999999999998876665 678999999999999999999999999999999975 579999999
Q ss_pred ceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc
Q psy16872 237 GDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316 (605)
Q Consensus 237 G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~ 316 (605)
|++.++.. ..+|+||.|+||+||||||+|||||+|||||||||+||++|||+|++||++|||++|.|+|+|+++|.+|+
T Consensus 164 g~i~~~~~-~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g~ 242 (314)
T PF00749_consen 164 GRIIFDPS-DLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDGK 242 (314)
T ss_dssp EEEEEEGG-GSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTSS
T ss_pred eeeeeccc-cCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCCc
Confidence 99998854 46999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCC--hHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccc
Q psy16872 317 KLSKRQGDMS--VEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQ 394 (605)
Q Consensus 317 KLSKR~g~~s--v~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (605)
|||||+++.+ +..|++.|++|+|++|||+++||+. ....++++++++++
T Consensus 243 kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~-----~~~~e~~~~~~~~~------------------------ 293 (314)
T PF00749_consen 243 KLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSP-----EAIREFFSLDELIK------------------------ 293 (314)
T ss_dssp BSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-H-----CTHHCHHHHHHHHH------------------------
T ss_pred EechhhccccccccccccCCCCHHHHHHHHHHhcCCc-----chhhhhcCHHHHHH------------------------
Confidence 9999999988 8999999999999999999999886 46789999999999
Q ss_pred cccccccccccccCCCCCCchhhhh
Q psy16872 395 TFFNEFDLQLVNENSCKVDLTNLNE 419 (605)
Q Consensus 395 ~~~~~F~~~~i~~~~a~fd~~KL~~ 419 (605)
.||++.++++++.||.+||+|
T Consensus 294 ----~f~~~~~~~~~~~fd~~kL~w 314 (314)
T PF00749_consen 294 ----QFDLSKISKSPAVFDRKKLDW 314 (314)
T ss_dssp ----HC-GGGBHSSHEEHHHHHHHH
T ss_pred ----HhhHhhccCchHHhCHHHhCC
Confidence 999999999999999999999
No 10
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=4.8e-90 Score=713.94 Aligned_cols=281 Identities=30% Similarity=0.488 Sum_probs=262.2
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 16 G~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~--------~~~QS~r~~~Y~~ 87 (299)
T PRK05710 16 GPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGP--------VLYQSQRHDAYRA 87 (299)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCC--------ceEeeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|+||+||||++||++.| +...+..+.|+|+||+++.++. .+++||||+|.+.+.|.|.++|.+
T Consensus 88 ~~~~L~~~G~aY~C~Ctr~el~~~~--~~~~~~~~~y~g~cr~~~~~~~-------~~~~iRlk~~~~~~~~~D~~~G~~ 158 (299)
T PRK05710 88 ALDRLRAQGLVYPCFCSRKEIAAAA--PAPPDGGGIYPGTCRDLLHGPR-------NPPAWRLRVPDAVIAFDDRLQGRQ 158 (299)
T ss_pred HHHHHHHCCCceecCCCHHHHHHHh--hhccCCCCcCCCccccCCcccc-------CCceEEEEcCCCceEEEEecceeE
Confidence 9999999999999999999998877 3345566799999999997652 378999999977899999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.++.+...+||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+|+|+|.+|+|||
T Consensus 159 ~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g~kLS 238 (299)
T PRK05710 159 HQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADGQKLS 238 (299)
T ss_pred eeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCCCccc
Confidence 88866577999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCH--HHHHHHhccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM--KDLVEKVCNNATYNRIKPTIKEFGIFWFQTFF 397 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~--eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (605)
||+++.+|.+ +|+.|+ +.||++++||+. ....+++++ +++++
T Consensus 239 Kr~~~~~i~~---~g~~p~-l~~~l~~lG~~~-----~~~~~~~~~~~~~~i~--------------------------- 282 (299)
T PRK05710 239 KQNGAPALDA---AGPLPV-LAAALRFLGQPP-----PAADASVEELLAQAVA--------------------------- 282 (299)
T ss_pred ccCCccchhh---cCcCHH-HHHHHHHcCCCC-----CccccccccCHHHHHH---------------------------
Confidence 9999999988 899999 999999999876 345566766 79999
Q ss_pred ccccccccccCCCCCCc
Q psy16872 398 NEFDLQLVNENSCKVDL 414 (605)
Q Consensus 398 ~~F~~~~i~~~~a~fd~ 414 (605)
.|+++++++++++|..
T Consensus 283 -~f~~~~~~~~~~~~~~ 298 (299)
T PRK05710 283 -HWDLTRLPRQAEINPA 298 (299)
T ss_pred -hCCHhhCCcCCccCCC
Confidence 9999999999998874
No 11
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=3.2e-88 Score=693.10 Aligned_cols=262 Identities=32% Similarity=0.487 Sum_probs=243.8
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 11 G~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~--------~~~QS~r~~~Y~~ 82 (272)
T TIGR03838 11 GPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE--------VVYQSQRHALYQA 82 (272)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC--------eeeeeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999996 6899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
+|++|+++|+||+||||++|+++.| .+..+.|+|.||+ +. ...+|++++||||+|.+.+.|+|+++|++
T Consensus 83 ~~~~L~~~G~aY~C~Ct~eel~~~~-----~~~~~~y~~~cr~-~~-----~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~ 151 (272)
T TIGR03838 83 ALDRLLAAGLAYPCQCTRKEIAAAA-----GDGGGIYPGTCRN-GL-----LGRPARPAAWRLRVPDGVIAFDDRLQGPQ 151 (272)
T ss_pred HHHHHHHcCCEEecCCCHHHHHHHh-----cCCCCCCCchhhc-cc-----ccccCCCceEEEecCCCCceEEEeeeeEE
Confidence 9999999999999999999998765 3455789999998 43 23457889999999988899999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.++.....+||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|+|+|.+|+|||
T Consensus 152 ~~~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~kLS 231 (272)
T TIGR03838 152 QQDLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADGEKLS 231 (272)
T ss_pred EecCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCCCeee
Confidence 88755667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHH
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLV 369 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli 369 (605)
||+++.+|++++ .++++.|+++++||+. +.+.++||++||+
T Consensus 232 KR~~~~~i~~~~----~~~~~~~~l~~lG~~~-----~~~~~~~~~~~~~ 272 (272)
T TIGR03838 232 KQNGAPALDLSH----PLPALLAALRFLGLPP-----PPELAAASPAELL 272 (272)
T ss_pred ccCCccchhcCC----cHHHHHHHHHHcCCCC-----CcccccCCHHHhC
Confidence 999999998873 5789999999999876 4577999999984
No 12
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=2.3e-80 Score=679.28 Aligned_cols=297 Identities=22% Similarity=0.336 Sum_probs=270.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||+||++||++||+|||||||||++|+.++|+++|+++|+||||+||++ ||+||+|+++|++
T Consensus 11 G~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~--------~~~qS~~~~~~~~ 82 (522)
T TIGR00440 11 GYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGK--------IRYSSDYFDELYR 82 (522)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCC--------ceEccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 6899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhcCC----CceEEEEcCCC--ccc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKENS----KYCIRFKLTNH--TES 230 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~--~~~ 230 (605)
+|++|+++|+||+|+||+|++++.|+.+ ..++|+++||++|++|+. ++|.+|. ++|||||+|.. ++.
T Consensus 83 ~a~~Li~~G~AY~c~cs~eel~~~R~~~----~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~ 158 (522)
T TIGR00440 83 YAEELIKKGLAYVDELTPEEIREYRGTL----TDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPV 158 (522)
T ss_pred HHHHHHHcCCEEeecCCHHHHHHhhhhc----ccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCce
Confidence 9999999999999999999999888543 247899999999999874 4676665 78999999854 689
Q ss_pred eeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CC---cEEE
Q psy16872 231 WQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PP---KFAH 306 (605)
Q Consensus 231 ~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P---~f~H 306 (605)
++|+|.|+|.+.++...|| |+.++||||||||||||+|||||||||+||++||+.|.||++++++. .| .|+|
T Consensus 159 ~rD~V~~Ri~~~~h~~~gd----k~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~r 234 (522)
T TIGR00440 159 MRDPVAYRIKFAPHHQTGT----KWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSR 234 (522)
T ss_pred EeeeeEEEEecCCCCCCCC----CeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEE
Confidence 9999999999887777677 55569999999999999999999999999999999999999999997 68 7999
Q ss_pred ecceecCCCccccccCCCC----------------ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 307 LPLLLNLNGSKLSKRQGDM----------------SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 307 ~plil~~dg~KLSKR~g~~----------------sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|.+|+|||||++.. ||.+||++||+|+||+||++++|||.+ ....++++++++++
T Consensus 235 ----ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~----~~~~e~~~l~~~~r 306 (522)
T TIGR00440 235 ----LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQ----DNNIEVVRLESCIR 306 (522)
T ss_pred ----ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCC----CCceehhhHHHHHH
Confidence 788999999999864 899999999999999999999999873 23358999999999
Q ss_pred HhcccccccccccccccccccccccccccccccccccCCCCCCchhh--hhhhHHH-HHhh
Q psy16872 371 KVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNL--NEFNRAE-IRRV 428 (605)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL--~~~N~~~-i~~~ 428 (605)
.|+..++++++|+||+.|| .|+|..+ +.++
T Consensus 307 ----------------------------~f~~~~~~r~~av~d~~kl~i~~~~~~~~~~~~ 339 (522)
T TIGR00440 307 ----------------------------EDLNENAPRAMAVIDPVEVVIENLSDEYELATI 339 (522)
T ss_pred ----------------------------HhhhhcCcccccccccceEEEecCCCCceEEec
Confidence 9999999999999999999 8888776 5543
No 13
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-77 Score=657.91 Aligned_cols=328 Identities=19% Similarity=0.266 Sum_probs=283.4
Q ss_pred hhhhhhhhhhhcCcccCCCCceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHH
Q psy16872 51 IYNRCEKLWITEGLRSSIPLKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLK 129 (605)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~ 129 (605)
|++++.+++.++.+. .+++|| |+|||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+
T Consensus 14 ~~~~~~~dl~~~~~~----~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~ 89 (554)
T PRK05347 14 IRQIIDEDLASGKHT----RVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVR 89 (554)
T ss_pred HHHHHHhHHhcCCcC----ceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHH
Confidence 678889999999774 577888 599999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH
Q psy16872 130 WIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID 209 (605)
Q Consensus 130 wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~ 209 (605)
||||+||++ ||+||+|+++|+++|++|+++|+||+||||+|++++.|+.+.+ ++++++||+++.+|+.
T Consensus 90 wLGi~~d~~--------~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~----~g~~~~~R~~s~eenl 157 (554)
T PRK05347 90 WLGFDWSGE--------LRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTE----PGKNSPYRDRSVEENL 157 (554)
T ss_pred HcCCCCCCC--------ceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhh----cCCCCCccCCCHHHHH
Confidence 999999986 6999999999999999999999999999999999999987654 4568999999999975
Q ss_pred H---HHhcCC----CceEEEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcC
Q psy16872 210 E---KLKENS----KYCIRFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRG 280 (605)
Q Consensus 210 ~---~~~~g~----~~~iR~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG 280 (605)
+ +|.+|. ++|||+|++. .+..++|+|..++.+.+|...||.+++ |||||||||||||+|||||||||
T Consensus 158 ~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~i----yPtYdfA~~vdD~l~gITHvlRg 233 (554)
T PRK05347 158 DLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCI----YPMYDFAHCISDAIEGITHSLCT 233 (554)
T ss_pred HHHHHHHCCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceee----ecCcCccceeeccccCCceEEec
Confidence 4 477775 7899999974 467788999888876666667885554 99999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHcCCC-CC---cEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHH
Q psy16872 281 VEWQISTTKHILIYKAFGWT-PP---KFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNAL 340 (605)
Q Consensus 281 ~d~l~stpkqi~ly~alG~~-~P---~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl 340 (605)
+||++|||+|.|||+||||. .| .|+| +|.+|+|||||++. .||.+||++||+||||
T Consensus 234 ~E~~~~t~~~~~i~~alg~~~~P~~~~F~r----ln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi 309 (554)
T PRK05347 234 LEFEDHRPLYDWVLDNLPIPPHPRQYEFSR----LNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESI 309 (554)
T ss_pred cccccChHHHHHHHHHcCCCCCCceEEEEE----ECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHH
Confidence 99999999999999999964 78 7999 57899999999954 3899999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccc------ccccccccccccccccccccccccccccccc
Q psy16872 341 INFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVN 406 (605)
Q Consensus 341 ~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~ 406 (605)
+||++++|||.+ ...-+.-.++...+++|+. ||.+||||+|+|++....+++...+++++..
T Consensus 310 ~nf~~~lG~s~~----~~~i~~~~L~~~nRk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~~~~ 377 (554)
T PRK05347 310 REFCERIGVTKQ----DSVIDMSMLESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPEDPE 377 (554)
T ss_pred HHHHHHhCCCCC----CCeecHHHHHHHHHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCCCCc
Confidence 999999998873 1222333455555666765 7999999999999876666666666665443
No 14
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=1.3e-76 Score=649.00 Aligned_cols=325 Identities=22% Similarity=0.281 Sum_probs=263.1
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLAL 156 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~ 156 (605)
+|||+||||||||||+||++||++||+|||||||||++|+.++|+++|+++|+||||+||+ +|+||+|+++
T Consensus 19 sPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~---------~~~qSdr~~~ 89 (523)
T PLN03233 19 EPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDS---------VSFTSDYFEP 89 (523)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCC---------CccccccHHH
Confidence 3339999999999999999999999999999999999999999999999999999999996 3899999999
Q ss_pred HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHH---HHh----cCCCceEEEEcCC--C
Q psy16872 157 YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDE---KLK----ENSKYCIRFKLTN--H 227 (605)
Q Consensus 157 Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~---~~~----~g~~~~iR~k~~~--~ 227 (605)
|+++|++|+++|+||+||||+|++++.|+. .++++||+++.+|..+ +|. .|.++|+|+|++. .
T Consensus 90 y~~~a~~Li~~G~AY~C~cs~eel~~~r~~--------~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~ 161 (523)
T PLN03233 90 IRCYAIILIEEGLAYMDDTPQEEMKKERAD--------RAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSD 161 (523)
T ss_pred HHHHHHHHHHcCCeEecCCCHHHHHHHHhh--------hccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCC
Confidence 999999999999999999999999877643 3678899999998643 343 3457899999875 3
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEe
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHL 307 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~ 307 (605)
+..++|+|.+++....+...||.+ +|+||||||||||||+|||||||||+||++|||+|++||+||||+.|.| |.
T Consensus 162 n~~~~D~Vi~R~d~~~h~~~Gd~~----~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~-~~ 236 (523)
T PLN03233 162 NGTLRDPVLFRQNTTPHHRSGTAY----KAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRI-HA 236 (523)
T ss_pred CCCCcCCEEEEEcCCcccccCCcc----cceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCee-ee
Confidence 566777777777655556667744 6799999999999999999999999999999999999999999999998 55
Q ss_pred cceecCCCccccccC-------CCC---------ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHH
Q psy16872 308 PLLLNLNGSKLSKRQ-------GDM---------SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371 (605)
Q Consensus 308 plil~~dg~KLSKR~-------g~~---------sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~ 371 (605)
|..+|.+|+|||||+ |.+ ||++||++||+||||+||++.+||+.+ ...-+.-.++..+++
T Consensus 237 f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~----~~~i~~~~l~~~nR~ 312 (523)
T PLN03233 237 FARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRR----VVNLDWAKFWAENKK 312 (523)
T ss_pred eEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCC----CceecHHHHHHHHHH
Confidence 888999999999996 544 799999999999999999999998763 122233345556667
Q ss_pred hccc------ccc--ccccccccccccccccc-ccccccccccccCCCCCCchhhhhhhHHHHHh
Q psy16872 372 VCNN------ATY--NRIKPTIKEFGIFWFQT-FFNEFDLQLVNENSCKVDLTNLNEFNRAEIRR 427 (605)
Q Consensus 372 ~~~~------~~~--~~~~~~~~~~~~~~~~~-~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~ 427 (605)
+|+. ||. +||||+|+|+|....+. +...+.+++...+.-.+-+.+-.++-+.-+++
T Consensus 313 ~ld~~a~R~m~V~~~~pv~v~i~n~~~~~~~~~~~~p~hP~~~~~G~r~v~~~~~iyIe~~D~~~ 377 (523)
T PLN03233 313 EIDKRAKRFMAIDKADHTALTVTNADEEADFAFSETDCHPKDPGFGKRAMRICDEVLLEKADTED 377 (523)
T ss_pred HhcccCCceEEEccCCcEEEEecCCCCccceeccccccCCCCCCCceEEEEECCcEEEEHhHHhh
Confidence 7766 576 69999999998654322 23345444433333333333334444444443
No 15
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=4e-76 Score=664.26 Aligned_cols=328 Identities=20% Similarity=0.298 Sum_probs=273.5
Q ss_pred ceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 71 KLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 71 ~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
++|||| +||||||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +|+
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~---------~~~ 335 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFK---------ITY 335 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCC---------ccc
Confidence 445663 6669999999999999999999999999999999999999999999999999999999985 589
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH---HHHHhcC----CCceEEE
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI---DEKLKEN----SKYCIRF 222 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~---~~~~~~g----~~~~iR~ 222 (605)
||+|++.++++|.+||++|+||+||||+++++++|..+ .+++||+++.+|. .+.|..| .++|+|+
T Consensus 336 qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~--------~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~ 407 (788)
T PLN02859 336 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKK--------MNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRM 407 (788)
T ss_pred ccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhh--------ccCCCCCCChHHhhhhhHHHHhchhccCCeEEEE
Confidence 99999766679999999999999999999999888643 2567999998875 3444332 2589999
Q ss_pred EcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC
Q psy16872 223 KLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT 300 (605)
Q Consensus 223 k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~ 300 (605)
|+|. +++.|+|+|.|+|.+.++...+|.+++ ||||||||+||||+|||||||||+||++|||+|.|||+||||.
T Consensus 408 Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~i----yPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~~ 483 (788)
T PLN02859 408 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI----YPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLY 483 (788)
T ss_pred eccCCCCCceeeeceeEEEeccCCCccCCCeEE----EecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCCC
Confidence 9984 578999999999998877666666655 9999999999999999999999999999999999999999999
Q ss_pred CCcEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCC
Q psy16872 301 PPKFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFS 364 (605)
Q Consensus 301 ~P~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s 364 (605)
.|.|.|+| ++|.+|+|||||++. +||.+||++||+|+||+||++++|||. .+.++++
T Consensus 484 ~P~~~~f~-rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~------~~~e~i~ 556 (788)
T PLN02859 484 QPYVWEYS-RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITR------SDNSLIR 556 (788)
T ss_pred CCcEEeee-eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCC------CCCceec
Confidence 99999999 699999999999964 489999999999999999999999886 3457899
Q ss_pred HHHHHHH---hccc------ccccccccccccccccccccccc---cccccccccCCCCCCchhhhhhhHHHHH
Q psy16872 365 MKDLVEK---VCNN------ATYNRIKPTIKEFGIFWFQTFFN---EFDLQLVNENSCKVDLTNLNEFNRAEIR 426 (605)
Q Consensus 365 ~eeli~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~F~~~~i~~~~a~fd~~KL~~~N~~~i~ 426 (605)
+++|-.. .|+. |+.+|+||+|+|+|....+++.. +.++++-+.+.-.+-+.+-.|+-+.-++
T Consensus 557 ~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~ 630 (788)
T PLN02859 557 MDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFR 630 (788)
T ss_pred HHHHHhhCHHhhCCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhh
Confidence 9998442 2222 69999999999999887777644 3332222222223444444555555544
No 16
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=1.6e-76 Score=592.70 Aligned_cols=219 Identities=42% Similarity=0.754 Sum_probs=213.4
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||++ ||+||+|+++|++
T Consensus 12 G~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~--------~~~QS~r~~~y~~ 83 (230)
T cd00418 12 GYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEG--------PYRQSDRFDLYRA 83 (230)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC--------eeehhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|
T Consensus 84 ~~~~L~~~g----------------------------------------------------------------------- 92 (230)
T cd00418 84 YAEELIKKG----------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHcC-----------------------------------------------------------------------
Confidence 999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
|+||||||+|||||+|||||||||+||++|||+|++||++|||++|.|+|+|++++.+|+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+++.+|++||++|+.|+||+||++.+||+. ..+.+++++++|++ .
T Consensus 156 Kr~~~~~i~~~r~~G~~p~ai~~~l~~lG~~~-----~~~~~~~~~~~li~----------------------------~ 202 (230)
T cd00418 156 KRKLNTTLRALRRRGYLPEALRNYLALIGWSK-----PDGHELFTLEEMIA----------------------------A 202 (230)
T ss_pred CcCCCcCHHHHHHCCCcHHHHHHHHHHcCCCC-----CCCccccCHHHHHH----------------------------h
Confidence 99999999999999999999999999999876 45679999999999 9
Q ss_pred ccccccccCCCCCCchhhhhhhHHHHHh
Q psy16872 400 FDLQLVNENSCKVDLTNLNEFNRAEIRR 427 (605)
Q Consensus 400 F~~~~i~~~~a~fd~~KL~~~N~~~i~~ 427 (605)
|++++++++|++||.+||.|+|++||++
T Consensus 203 f~~~~~~~~~~~~d~~kL~~~N~~~l~~ 230 (230)
T cd00418 203 FSVERVNSADATFDWAKLEWLNREYIRE 230 (230)
T ss_pred cCHhhCCCCCcccCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999973
No 17
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.5e-76 Score=648.89 Aligned_cols=330 Identities=20% Similarity=0.302 Sum_probs=281.4
Q ss_pred ceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 71 KLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 71 ~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
+++|| |+||||||||||||||+||++||++||+|||||||||++|+.+||+++|++||+||||+||++ ||+
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~--------~~~ 124 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVG--------PTY 124 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCc--------eee
Confidence 56777 488899999999999999999999999999999999999999999999999999999999986 689
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhc----CCCceEEE
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKE----NSKYCIRF 222 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~----g~~~~iR~ 222 (605)
||+|+++|+++|++|+++|+||.|+||+|++++.|. .+|+++||+++++|.. +.|.+ +..+++|+
T Consensus 125 QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~--------~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~ 196 (601)
T PTZ00402 125 SSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRF--------DGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRA 196 (601)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHh--------CCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEE
Confidence 999999999999999999999999999999865542 3589999999998864 33433 34689999
Q ss_pred EcCCC--ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC
Q psy16872 223 KLTNH--TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT 300 (605)
Q Consensus 223 k~~~~--~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~ 300 (605)
|++.. +..++|+|.+++.+..+...|| ++||+||||||||||||+|||||||||+||++|||+|++||++|||+
T Consensus 197 kid~~~~n~~~rD~Vl~R~~~~~h~rtGd----k~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~ 272 (601)
T PTZ00402 197 KISVDNENKAMRDPVIYRVNLTPHARQGT----KYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIR 272 (601)
T ss_pred ecccCCCCCCccCCEEEEEcCCcccccCC----CCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCC
Confidence 98743 5689999999998777777888 68999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCC
Q psy16872 301 PPKFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFS 364 (605)
Q Consensus 301 ~P~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s 364 (605)
+|.|+|+|+ +|.+|+|||||++. +||.++|++||.|+||++|+..+|++. ....|+
T Consensus 273 ~P~~~h~~r-Ln~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk-------~~~~~d 344 (601)
T PTZ00402 273 KPIVEDFSR-LNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSK-------TVNFME 344 (601)
T ss_pred CceEEEEee-EcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCC-------CCcccC
Confidence 999999996 89999999999875 478999999999999999999999765 334555
Q ss_pred HHHH---HHHhccc------ccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHHHhh
Q psy16872 365 MKDL---VEKVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRV 428 (605)
Q Consensus 365 ~eel---i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~ 428 (605)
++.| .++.|+. ||.+|+||+|+|++....+++....++++-..+.-.+-+.+-.|+-+.-++++
T Consensus 345 ~~~L~~~nr~~l~~~a~R~maV~~p~kv~i~~~~~~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~~l 417 (601)
T PTZ00402 345 WSKLWYFNTQILDPSVPRYTVVSNTLKVRCTVEGQIHLEACEKLLHKKVPDMGEKTYYKSDVIFLDAEDVALL 417 (601)
T ss_pred HHHHHHHHHHHHhhcCCceEEEcCCCEEEEEECCCCcceEeeccCCCCCcccCceEEEECCeEEEEhhhHhhc
Confidence 5544 4455544 79999999999999877767766777665554444555555556666555544
No 18
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=8e-74 Score=651.59 Aligned_cols=349 Identities=21% Similarity=0.275 Sum_probs=291.2
Q ss_pred hhhhhhhhhhhhcCcccCCCCceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHH
Q psy16872 50 MIYNRCEKLWITEGLRSSIPLKLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDL 128 (605)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L 128 (605)
-|++++.+++..|.+. .++|||| +|||||||||||+||+||++||++||+|||||||||++|+.++|+++|+++|
T Consensus 15 f~~~~~~~~l~~g~~~----~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl 90 (771)
T PRK14703 15 FITEIIEEDLEAGRYP----RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDV 90 (771)
T ss_pred HHHHHHHHHHhcCCCC----ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHH
Confidence 3677788888888664 5788995 9999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH
Q psy16872 129 KWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI 208 (605)
Q Consensus 129 ~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~ 208 (605)
+||||+||++ ||+||+|+++|+++|++|+++|+||+|+||++++++.|..+.. ++|+++||+++.+|.
T Consensus 91 ~wLG~~wd~~--------~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~----~g~~~~~R~~s~ee~ 158 (771)
T PRK14703 91 RWLGFDWGEH--------LYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTE----PGTPSPYRDRSVEEN 158 (771)
T ss_pred HHcCCCCCCC--------ceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhh----cCCCCCCCCCCHHHH
Confidence 9999999986 6999999999999999999999999999999999988876542 578899999999987
Q ss_pred H---HHHhcCC----CceEEEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEc
Q psy16872 209 D---EKLKENS----KYCIRFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLR 279 (605)
Q Consensus 209 ~---~~~~~g~----~~~iR~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIR 279 (605)
. ++|.+|. ++|+|+|++. .+..++|+|..++...++...|| ++++||||||||+||||+||||||||
T Consensus 159 l~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd----~~~i~PtYdfa~~vdD~l~gITHvlR 234 (771)
T PRK14703 159 LDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGD----EWCIYPMYDFAHPLEDAIEGVTHSIC 234 (771)
T ss_pred HHHHHHHhCCCCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCC----CCCcCCCccccceeeccccCCcEEEe
Confidence 5 4788887 7899999874 35678899988887665666778 46689999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHcCCC-C-C---cEEEecceecCCCccccccC-------CCC---------ChHHHHHcCCCHH
Q psy16872 280 GVEWQISTTKHILIYKAFGWT-P-P---KFAHLPLLLNLNGSKLSKRQ-------GDM---------SVEAIRNSEFLPN 338 (605)
Q Consensus 280 G~d~l~stpkqi~ly~alG~~-~-P---~f~H~plil~~dg~KLSKR~-------g~~---------sv~~~r~~G~~Pe 338 (605)
|+||++|||+|.|||++||+. + | .|+|+|+ +|+|||||+ |.+ ||.+||++||+|+
T Consensus 235 g~E~~~~~~~~~~l~~~l~~~~~~P~~~~f~rl~l----~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~pe 310 (771)
T PRK14703 235 TLEFENNRAIYDWVLDHLGPWPPRPRQYEFARLAL----GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPE 310 (771)
T ss_pred cHhhhhccHHHHHHHHHhCCCCCCcceeEEEEecc----CCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHH
Confidence 999999999999999999644 3 5 7999776 789999998 443 7999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccc------ccccccccccccccccccccccccccccc-cccCCCC
Q psy16872 339 ALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQL-VNENSCK 411 (605)
Q Consensus 339 Al~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~-i~~~~a~ 411 (605)
||+||++.+||+.+ ....+.-.++..++++|+. |+.+|+||+|+|++....+++...+.+++ -..+.-.
T Consensus 311 Ai~~f~~~lG~s~~----~~~i~~~~L~~~~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~~~~~~G~r~ 386 (771)
T PRK14703 311 AIRDFADQIGVAKT----NSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPHDVPKEGSRK 386 (771)
T ss_pred HHHHHHHHhCCCcc----CceecHHHHHHHHHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCCCCccCceEE
Confidence 99999999998873 2233444556666677765 79999999999999777777766776664 2222222
Q ss_pred CCchhhhhhhHHHHH
Q psy16872 412 VDLTNLNEFNRAEIR 426 (605)
Q Consensus 412 fd~~KL~~~N~~~i~ 426 (605)
+-+.+-.|+-+.-++
T Consensus 387 v~~~~~iyIe~~D~~ 401 (771)
T PRK14703 387 VPFTRELYIERDDFS 401 (771)
T ss_pred EEEcCeEEEEhhHhh
Confidence 333344444444444
No 19
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.4e-73 Score=573.52 Aligned_cols=227 Identities=54% Similarity=0.937 Sum_probs=222.2
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+|+||+||++||++||+|||||||||++|+.+++++.|+++|+||||+||+++..+|+||||+||+|+++|++
T Consensus 12 G~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~ 91 (239)
T cd00808 12 GFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRK 91 (239)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|
T Consensus 92 ~~~~L~~~g----------------------------------------------------------------------- 100 (239)
T cd00808 92 YAEKLLEKG----------------------------------------------------------------------- 100 (239)
T ss_pred HHHHHHHcC-----------------------------------------------------------------------
Confidence 999999988
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
||+||||||+||||++|||||||||+||+++|++|++++++|||+.|.|.|+|+++|.+|.|||
T Consensus 101 ----------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~~~~g~KLS 164 (239)
T cd00808 101 ----------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNPDGKKLS 164 (239)
T ss_pred ----------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeeccccCCCCCccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+|+.+|++||++|+.|+||++|++.+||+. .++.++++++||++ +
T Consensus 165 KR~~~~~l~~lr~~G~~p~ai~~~l~~lG~~~-----~~~~~~~~~~~l~~----------------------------~ 211 (239)
T cd00808 165 KRKGDTSISDYREEGYLPEALLNYLALLGWSP-----PDGEEFFTLEELIE----------------------------L 211 (239)
T ss_pred CCCCCccHHHHHHCCCCHHHHHHHHHHcCCCC-----CCCCCcCCHHHHHh----------------------------c
Confidence 99999999999999999999999999999876 45678999999999 9
Q ss_pred ccccccccCCCCCCchhhhhhhHHHHH
Q psy16872 400 FDLQLVNENSCKVDLTNLNEFNRAEIR 426 (605)
Q Consensus 400 F~~~~i~~~~a~fd~~KL~~~N~~~i~ 426 (605)
|++++++++|+.||.+||.|+|++||+
T Consensus 212 f~~~~~~~~~~~~d~~kL~~~n~~~l~ 238 (239)
T cd00808 212 FDLERVSKSPAIFDPEKLDWLNGQYIR 238 (239)
T ss_pred CCHhhCCcCcCcCCHHHHHHHHHHHhh
Confidence 999999999999999999999999997
No 20
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-72 Score=621.19 Aligned_cols=323 Identities=29% Similarity=0.409 Sum_probs=263.1
Q ss_pred ceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCC--CCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 71 KLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQ--TRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 71 ~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~--~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
+++|| |+|||+||||||||||+||++||++||+|||||||||+ +|+.+++++.|++||+||||+||+ +
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~---------~ 172 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE---------V 172 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCC---------c
Confidence 44555 36669999999999999999999999999999999999 999999999999999999999997 4
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhcCC----CceE
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKENS----KYCI 220 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~g~----~~~i 220 (605)
|+||+|+++|+++|++|+++|+||+||||++++++.|. .+++++||+++++|.. ++|.+|. ++|+
T Consensus 173 ~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~--------~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vl 244 (567)
T PRK04156 173 VIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRD--------AGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVV 244 (567)
T ss_pred cCcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHh--------cCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEE
Confidence 89999999999999999999999999999999876652 2478999999998864 5566665 6899
Q ss_pred EEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC
Q psy16872 221 RFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG 298 (605)
Q Consensus 221 R~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG 298 (605)
|+|++. .+..++|.|.+++....+...||-++ |+||||||++||||+|||||||||.||++|||+|.+||++||
T Consensus 245 R~k~d~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~----i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg 320 (567)
T PRK04156 245 RVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYR----VWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG 320 (567)
T ss_pred EEECcccCCCCCccccEEEEEcCCCccccCCCeE----EEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC
Confidence 999985 36678888888875443444555333 389999999999999999999999999999999999999999
Q ss_pred CCCCcEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCcccc
Q psy16872 299 WTPPKFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQL 362 (605)
Q Consensus 299 ~~~P~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~ 362 (605)
|+.|.|+|+|++ +.+|+|||||++. .||..||++||.|+||+||++.+||+. +...
T Consensus 321 ~~~P~~~H~~~L-~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~-------~~~~ 392 (567)
T PRK04156 321 WEYPETIHYGRL-KIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKE-------TDAT 392 (567)
T ss_pred CCCceEEEccee-cCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCC-------CCcc
Confidence 999999999984 6799999999932 589999999999999999999999765 3456
Q ss_pred CCHHHHHH---Hhccc------ccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHH
Q psy16872 363 FSMKDLVE---KVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEI 425 (605)
Q Consensus 363 ~s~eeli~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i 425 (605)
||++.|-. +.++. +|.+|+||+|+|.+ .+++...+.+++-..+.-.+-+.+-.|+.+.-+
T Consensus 393 ~~~~~L~~~nr~~ld~~a~R~~~V~~pv~v~i~~~~---~~~~~~p~hP~~~~~G~r~v~~~~~i~i~~~D~ 461 (567)
T PRK04156 393 ISWENLYAINRKLIDPIANRYFFVRDPVELEIEGAE---PLEAKIPLHPDRPERGEREIPVGGKVYVSSDDL 461 (567)
T ss_pred cCHHHHHHHHHHHHhccCCceEEECCceEEEEcCCC---ceEEEcCCCCCCCCCceEEEEECCeEEEEHHHH
Confidence 77666554 44543 79999999999965 233334555544433333333333334444333
No 21
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=2.9e-72 Score=620.54 Aligned_cols=296 Identities=29% Similarity=0.443 Sum_probs=259.9
Q ss_pred CceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.+||||| +|||+|||||||+||+||++||++||+|||||||||++|+.++|++.|+++|+|||+.||+. |
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~---------~ 163 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEV---------V 163 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCcc---------c
Confidence 3567774 88899999999999999999999999999999999999999999999999999999999974 7
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhc----CCCceEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKE----NSKYCIR 221 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~----g~~~~iR 221 (605)
+||+|++.|+++|++|+++|+||+|+||++++++.|. .+|+++||+++.+|.. ++|.+ |.++|||
T Consensus 164 ~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~--------~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR 235 (560)
T TIGR00463 164 YQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRN--------DGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVR 235 (560)
T ss_pred cccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHh--------CCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEE
Confidence 9999999999999999999999999999999987663 2489999999988753 45655 4678999
Q ss_pred EEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 222 FKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 222 ~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
+|++. .+..++|+|.+++....+...||.++ ++||||||||||||+|||||||||.||++||++|+++|++|||
T Consensus 236 ~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~----~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~ 311 (560)
T TIGR00463 236 AKTDYKHKNPAIRDWVIFRINKTPHPRTGDKYK----VYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGW 311 (560)
T ss_pred EECCCcCCCccccCcEEEEecCCCccccCCEEE----EEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCC
Confidence 99975 46789999999998766777899887 5999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecceecCCCccccccCC----------------CCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccC
Q psy16872 300 TPPKFAHLPLLLNLNGSKLSKRQG----------------DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLF 363 (605)
Q Consensus 300 ~~P~f~H~plil~~dg~KLSKR~g----------------~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~ 363 (605)
.+|.|.|+|++.+.+|.|||||+. ..||+.||++|+.|+||+||++.+|||.+ ...-+.-
T Consensus 312 ~~P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~----~~~i~~~ 387 (560)
T TIGR00463 312 ELPEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRN----DVNLSWK 387 (560)
T ss_pred CCCeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCC----CceeeHH
Confidence 999999999999999999998762 14899999999999999999999998763 1122333
Q ss_pred CHHHHHHHhccc------ccccccccccccccc
Q psy16872 364 SMKDLVEKVCNN------ATYNRIKPTIKEFGI 390 (605)
Q Consensus 364 s~eeli~~~~~~------~~~~~~~~~~~~~~~ 390 (605)
.++...++.++. ++.+|+||+|+|++.
T Consensus 388 ~l~~~nr~~id~~a~R~~~V~~p~~v~i~~~~~ 420 (560)
T TIGR00463 388 NIYAFNKKIIDPIARRYFFIWNPVKIEIEGAPE 420 (560)
T ss_pred HHHHHHHHHhCcCCCceEEEcCCcEEEEecCCC
Confidence 445555566655 799999999999873
No 22
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-71 Score=610.61 Aligned_cols=293 Identities=20% Similarity=0.310 Sum_probs=257.0
Q ss_pred eeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 72 LKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 72 v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
++|| |+|||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+||||+||++ ++|
T Consensus 53 ~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~---------~~q 123 (574)
T PTZ00437 53 YFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWV---------TFS 123 (574)
T ss_pred EEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCC---------CcC
Confidence 3444 255599999999999999999999999999999999999999999999999999999999985 589
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH---HHHHhcC----CCceEEEE
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI---DEKLKEN----SKYCIRFK 223 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~---~~~~~~g----~~~~iR~k 223 (605)
|+|++.|+++|++|+++|+||+||||+++++++|.++ .+++||+++.+|. .++|.+| ..+|||+|
T Consensus 124 S~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~--------~~~~~R~~~~eenL~lfe~M~~g~~~~g~~vlR~K 195 (574)
T PTZ00437 124 SDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQR--------EDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVK 195 (574)
T ss_pred chhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcc--------cCCccccCCHHHHHHHHHHHhhcccccCCeEEEEe
Confidence 9999999999999999999999999999999888542 2689999999985 4566555 35699999
Q ss_pred cCCC--ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCC
Q psy16872 224 LTNH--TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTP 301 (605)
Q Consensus 224 ~~~~--~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~ 301 (605)
+|.. ++.++|+|.|+|.+.++...||.+ +|||||||||+||||+||||||||+.||..+++.|.||+++|||..
T Consensus 196 ~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~----~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l~~ 271 (574)
T PTZ00437 196 ADMKSDNPNMRDFIAYRVKYVEHPHAKDKW----CIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWR 271 (574)
T ss_pred CcCCCCCCccccCeeeeeccCCcCCCCCce----EEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCCcc
Confidence 9954 789999999999998888889966 6699999999999999999999999999999999999999999999
Q ss_pred CcEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCH
Q psy16872 302 PKFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM 365 (605)
Q Consensus 302 P~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~ 365 (605)
|...|.|- +|.+|+|||||++. .||.+||++||+||||+||++.+|||.+ ...-+.-.+
T Consensus 272 p~~~ef~r-ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~----~~~i~~~~L 346 (574)
T PTZ00437 272 PHVWEFSR-LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRS----MNVIQISML 346 (574)
T ss_pred cceEeeee-ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCcc----ceEeeHHHH
Confidence 98888886 99999999999876 5899999999999999999999998763 112222334
Q ss_pred HHHHHHhccc------ccccccccccccccc
Q psy16872 366 KDLVEKVCNN------ATYNRIKPTIKEFGI 390 (605)
Q Consensus 366 eeli~~~~~~------~~~~~~~~~~~~~~~ 390 (605)
+..++++|+. ||.+||||+|+|++.
T Consensus 347 e~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~ 377 (574)
T PTZ00437 347 ENTLREDLDERCERRLMVIDPIKVVVDNWKG 377 (574)
T ss_pred HHHHHHHhcccCccceEEccceEEEEecCCC
Confidence 4455566654 799999999999873
No 23
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=1.5e-71 Score=633.99 Aligned_cols=289 Identities=25% Similarity=0.363 Sum_probs=253.3
Q ss_pred CceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.++||| |+||||||||||||||+||++||++||+|||||||||++|+.++|++.|++||+|||++||++ |
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~---------~ 283 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAV---------T 283 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCc---------c
Confidence 456888 499999999999999999999999999999999999999999999999999999999999974 7
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhc----CCCceEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKE----NSKYCIR 221 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~----g~~~~iR 221 (605)
+||+|+++|+++|++||++|+||+|+|+.+++.+.|. .+|+++||+++.+|+. ++|.+ |.++|+|
T Consensus 284 ~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~--------~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR 355 (722)
T PLN02907 284 YTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERM--------DGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVR 355 (722)
T ss_pred cccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHh--------cCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEE
Confidence 9999999999999999999999999999988765542 1699999999999864 45544 4588999
Q ss_pred EEcC--CCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 222 FKLT--NHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 222 ~k~~--~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
+|++ ..+..++|+|.+++....+...||++ +|+||||||||||||+|||||||||+||++|||+|++||++|||
T Consensus 356 ~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~----~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~ 431 (722)
T PLN02907 356 GKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY----KVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGL 431 (722)
T ss_pred EEcccCCCCCCcccCEEEEecCCcccccCCcc----ceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCC
Confidence 9998 34678999999999876777889965 88999999999999999999999999999999999999999999
Q ss_pred CCC---cEEEecceecCCCccccccC-------CC---------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCcc
Q psy16872 300 TPP---KFAHLPLLLNLNGSKLSKRQ-------GD---------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKS 360 (605)
Q Consensus 300 ~~P---~f~H~plil~~dg~KLSKR~-------g~---------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~ 360 (605)
+.| .|+| +|.+|+|||||+ |. +|++++|++||+|+||++|+..+|||. +.
T Consensus 432 ~~p~~~~f~~----l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~-------~~ 500 (722)
T PLN02907 432 RKVHIWEFSR----LNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASK-------NL 500 (722)
T ss_pred CCCeeEEEEE----EcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCc-------CC
Confidence 987 5777 789999999998 43 379999999999999999999999876 23
Q ss_pred ccCCHHHH---HHHhccc------ccccc--cccccccccc
Q psy16872 361 QLFSMKDL---VEKVCNN------ATYNR--IKPTIKEFGI 390 (605)
Q Consensus 361 e~~s~eel---i~~~~~~------~~~~~--~~~~~~~~~~ 390 (605)
..++++.| .+..++. ++.+| |+++|+|++.
T Consensus 501 ~~~~~~~l~~~nr~~id~~a~R~~~v~~p~~v~~~i~~~~~ 541 (722)
T PLN02907 501 NLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLTLTDGPE 541 (722)
T ss_pred ccccHHHHHHHHHHHhccCCCceeEEecCCEEEEEEcCCCC
Confidence 45555544 4444443 79999 8889999875
No 24
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.1e-66 Score=522.38 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=186.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||+ ||+||+|+++|++
T Consensus 12 G~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~---------~~~QS~r~~~Y~~ 82 (238)
T cd00807 12 GYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK---------VTYASDYFDQLYE 82 (238)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC---------ceecccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999994 5899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|+||+ .|+ .|
T Consensus 83 ~~~~L~~~g~aY~--------------------------~~~------------~~------------------------ 100 (238)
T cd00807 83 YAEQLIKKGKAYV--------------------------HHR------------TG------------------------ 100 (238)
T ss_pred HHHHHHHcCCeec--------------------------CCC------------CC------------------------
Confidence 9999999999998 011 00
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCc---EEEecceecCCCc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPK---FAHLPLLLNLNGS 316 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~---f~H~plil~~dg~ 316 (605)
+++++ +||||||||||||+|||||||||+||++|||+|++||++|||++|. |+| +|.+|+
T Consensus 101 --------~~~~i-----~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~h----ln~~g~ 163 (238)
T cd00807 101 --------DKWCI-----YPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSR----LNLTYT 163 (238)
T ss_pred --------CCEEE-----EeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEE----ECCCCC
Confidence 13333 6999999999999999999999999999999999999999999995 777 499999
Q ss_pred cccccCCCC----------------ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccc
Q psy16872 317 KLSKRQGDM----------------SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380 (605)
Q Consensus 317 KLSKR~g~~----------------sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~ 380 (605)
|||||+++. ++..|+++|+.||||+||++++|||.
T Consensus 164 kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~----------------------------- 214 (238)
T cd00807 164 VMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSK----------------------------- 214 (238)
T ss_pred CccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCC-----------------------------
Confidence 999999642 58999999999999999999999643
Q ss_pred cccccccccccccccccccccccccccCCCCCCchhhhhhhHHHHHhh
Q psy16872 381 IKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRV 428 (605)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~ 428 (605)
+++.||.+||.|+|++||...
T Consensus 215 ---------------------------~~~~~~~~~l~~~nr~~id~~ 235 (238)
T cd00807 215 ---------------------------ADSTIDWDKLEACVRKDLNPT 235 (238)
T ss_pred ---------------------------CCcccCHHHHHHHHHHHhccC
Confidence 478899999999999999754
No 25
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=9.7e-64 Score=502.55 Aligned_cols=187 Identities=37% Similarity=0.575 Sum_probs=173.1
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCC--CcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTR--FVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALY 157 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R--~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y 157 (605)
|+||||||||||+||++||++||+|+|||||||++| +.+++++.|+++|+||||+||+ +|+||+|+++|
T Consensus 12 G~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~---------~~~qS~r~~~y 82 (240)
T cd09287 12 GPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE---------VVIASDRIELY 82 (240)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCC---------ccchhccHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999996 48999999999
Q ss_pred HHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccc
Q psy16872 158 QKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYG 237 (605)
Q Consensus 158 ~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G 237 (605)
++++++|+++|+||+ .
T Consensus 83 ~~~~~~Li~~G~aY~---------------------------------------------------~------------- 98 (240)
T cd09287 83 YEYARKLIEMGGAYV---------------------------------------------------H------------- 98 (240)
T ss_pred HHHHHHHHHcCCccc---------------------------------------------------C-------------
Confidence 999999999999997 0
Q ss_pred eeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcc
Q psy16872 238 DISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSK 317 (605)
Q Consensus 238 ~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~K 317 (605)
....+|+++ +||||||+||||++|||||||||+||++|||+|++||++|||+.|.|+|+|++.+ +|+|
T Consensus 99 ------~~~~~~~~i-----~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~-~~~k 166 (240)
T cd09287 99 ------PRTGSKYRV-----WPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKI-EGGK 166 (240)
T ss_pred ------cccCCcEEE-----EEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecC-CCCe
Confidence 000146665 5999999999999999999999999999999999999999999999999999765 5799
Q ss_pred ccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCC
Q psy16872 318 LSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGF 351 (605)
Q Consensus 318 LSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~ 351 (605)
||||+++ +++..||++||.|+||+||++.+||+.
T Consensus 167 LSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~ 216 (240)
T cd09287 167 LSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQ 216 (240)
T ss_pred eccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 9999942 579999999999999999999999765
No 26
>KOG1148|consensus
Probab=100.00 E-value=3.6e-48 Score=416.14 Aligned_cols=328 Identities=22% Similarity=0.314 Sum_probs=276.1
Q ss_pred CceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.++|||| +|||+||||||.+.-+||.|||.+||.+.||+|||+|+.+.++|.++|.++.+|||.++=.. .
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kv---------T 318 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKV---------T 318 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceee---------e
Confidence 4689997 99999999999999999999999999999999999999999999999999999999986443 5
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH---HHHHhcCC----CceEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI---DEKLKENS----KYCIR 221 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~---~~~~~~g~----~~~iR 221 (605)
+.|++++..++.|.+||.+|+||.|.|+.+||.+.| |...+ .+++|+.+.||. .+-|+.|. ..++|
T Consensus 319 ysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~r------g~~~~-~spwRdRPieEsL~lF~~Mr~Gk~~eGeAtLR 391 (764)
T KOG1148|consen 319 YSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERR------GFNER-LSPWRDRPIEESLRLFEDMRDGKYEEGEATLR 391 (764)
T ss_pred cchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhc------CCCCC-CCccccCcHHHHHHHHHHHhcCCcCcChhhee
Confidence 899999999999999999999999999999997655 33333 567899999986 45676663 56999
Q ss_pred EEcC--CCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 222 FKLT--NHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 222 ~k~~--~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
+|++ ++++.+.|+|..+|.+.++...||.|.+ ||||+|++++-|.+..|||.+|..|+..+..-+-||+.||+.
T Consensus 392 mK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcI----YPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~i 467 (764)
T KOG1148|consen 392 MKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCI----YPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEI 467 (764)
T ss_pred eeeeccCCCccccccceeeeecCCCCCCCCceEE----ecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhc
Confidence 9987 4578899999999999889899998888 999999999999999999999999999999999999999997
Q ss_pred CCC---cEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCcc
Q psy16872 300 TPP---KFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKS 360 (605)
Q Consensus 300 ~~P---~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~ 360 (605)
-.| +|+. ||..|+.||||+.. .|+..+|++|+.|+||.+|++.+|.... ..+-
T Consensus 468 Y~P~qwEYgR----LNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a----~~~i 539 (764)
T KOG1148|consen 468 YCPVQWEYGR----LNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTA----QTTI 539 (764)
T ss_pred ccchhhhhce----eeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCccee----ecee
Confidence 766 5787 78899999999742 5899999999999999999999996542 3455
Q ss_pred ccCCHHHHHHHhccc------ccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHH
Q psy16872 361 QLFSMKDLVEKVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEI 425 (605)
Q Consensus 361 e~~s~eeli~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i 425 (605)
+.--+|..+++.||. ++++||||+|+|++..+.+...=++-+.+-+.+--.+-+++.-++-+--+
T Consensus 540 ~v~~lE~~VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~dp~~g~~~Vpft~vIYIErSDF 610 (764)
T KOG1148|consen 540 DVARLEAAVRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPGDPTSGFHKVPFTRVIYIERSDF 610 (764)
T ss_pred cHHHHHHHHHHHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCCCCccccccccccceEEEEcccc
Confidence 677889999999987 59999999999999986655544444433333322334444444443333
No 27
>KOG1147|consensus
Probab=100.00 E-value=8.2e-44 Score=379.60 Aligned_cols=278 Identities=25% Similarity=0.377 Sum_probs=237.9
Q ss_pred CceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.+|+||| +||||||||||++||+|+.||.+++|+.|+|+|||+|+.+..++++.|++||..|||.+|.. .
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~---------T 270 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRV---------T 270 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCccee---------e
Confidence 5689996 99999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhc----CCCceEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKE----NSKYCIR 221 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~----g~~~~iR 221 (605)
+.|++++....++.+||++|+||....+.|.+...| + .+-+++||+.+.||.. +.|.. |-..|+|
T Consensus 271 yTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER---~-----~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvR 342 (712)
T KOG1147|consen 271 YTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDER---E-----QGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVR 342 (712)
T ss_pred echhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHH---h-----ccccccccCCCHHHHHHHHHHHhccchhhhhhhee
Confidence 789999999999999999999998777776664443 2 2346889999999863 34443 4577999
Q ss_pred EEcCCC--ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 222 FKLTNH--TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 222 ~k~~~~--~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
.|++.. +-.++|++..++...++...|| |..-||||+|||+|-|.+.||||.+|..|++...+++.|+.+|||.
T Consensus 343 aKIdm~s~NkaMRDPviYRcn~~pHhRTG~----KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~L 418 (712)
T KOG1147|consen 343 AKIDMSSPNKAMRDPVIYRCNPEPHHRTGD----KYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGL 418 (712)
T ss_pred eeecccCCCccccCCeeEecCCCCCCcCCC----ceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcC
Confidence 999854 5689999999998888888999 5556999999999999999999999999999999999999999999
Q ss_pred CCCc---EEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCcc
Q psy16872 300 TPPK---FAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKS 360 (605)
Q Consensus 300 ~~P~---f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~ 360 (605)
..|. |+. +|...+.||||+.. +||++.+++|..-|+|++|++..|.|. +.
T Consensus 419 Rkp~iwefsR----lN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk-------~v 487 (712)
T KOG1147|consen 419 RKPHIWEFSR----LNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSK-------NV 487 (712)
T ss_pred Cccceeehhh----hhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCcc-------ce
Confidence 9884 555 78889999999742 699999999999999999999999543 44
Q ss_pred ccCCHHHHHHHhccccccccc
Q psy16872 361 QLFSMKDLVEKVCNNATYNRI 381 (605)
Q Consensus 361 e~~s~eeli~~~~~~~~~~~~ 381 (605)
..+.++-+ ++.|-.+-+||
T Consensus 488 ~~meWdki--WAfNKKvIDPV 506 (712)
T KOG1147|consen 488 VTMEWDKI--WAFNKKVIDPV 506 (712)
T ss_pred eeeehHhh--hhhcccccCCC
Confidence 44555544 34665454444
No 28
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=5.8e-26 Score=252.68 Aligned_cols=420 Identities=19% Similarity=0.204 Sum_probs=236.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCCCc--------------------------------H
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTRFV--------------------------------P 118 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R~~--------------------------------~ 118 (605)
.+|||.+||||++..+-.+.+||.. .-.||.=-||.|+-|.+ +
T Consensus 31 ~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~~~~~~~ 110 (510)
T PRK00750 31 IGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGCHESYAE 110 (510)
T ss_pred CCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCCchHHHH
Confidence 4899999999999999888888864 35788888999874443 3
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCC---
Q psy16872 119 EAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLV--- 193 (605)
Q Consensus 119 ~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~--- 193 (605)
.+.+.+.+.|+.+||++|- |++++ +-..|.+.+...+++ .+++.+.=.+-......
T Consensus 111 ~~~~~~~~~~~~~gi~~d~----------~~~t~~y~~g~~~~~i~~~l~~---------~~~i~~il~~~~~~~~~~~~ 171 (510)
T PRK00750 111 HFNAPLREFLDRFGIEYEF----------ISATECYKSGRYDEAILTALEN---------RDEIMEILLPYLGEERQATY 171 (510)
T ss_pred HHHHHHHHHHHHcCCceEE----------EehhhhhccCchHHHHHHHHHh---------HHHHHHHHHHhcCCccCCCe
Confidence 4566677788888888773 34444 223455555544443 12221111111000011
Q ss_pred -C--CCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccce-eeecCCCCCCCcEEEecCCcccchhhhhhhh
Q psy16872 194 -P--KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGD-ISYNVFHNEGDPVIIKSDGFPTYHFANVVDD 269 (605)
Q Consensus 194 -~--~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~-i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD 269 (605)
| -+...|..... ..++-+....+.+.+.|.- |. ...+.... .-..-||-| +|+ -=
T Consensus 172 ~P~~pic~~cg~~~~-----------~~~~~~d~~~~~v~y~~~c-G~~~~~~~~~g-~~KL~Wr~d-W~~-------rW 230 (510)
T PRK00750 172 SPFLPICPKCGKVLT-----------TPVISYDAEAGTVTYDCEC-GHEGEVPVTGG-HGKLQWKVD-WPM-------RW 230 (510)
T ss_pred eeeeeeCCCCCccce-----------EEEEEEeCCCCEEEEEcCC-CCEEEEecCCC-CcccCCCCC-cHH-------HH
Confidence 1 11123432211 1111222222234443321 21 11111000 001112222 111 11
Q ss_pred hcCCcceEEcCCCCcc-cHHHHHHHHH-HcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 270 HHMNISHVLRGVEWQI-STTKHILIYK-AFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 270 ~~m~ITHVIRG~d~l~-stpkqi~ly~-alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
...||+..+.|.||.. |......+.+ +||+++|...|.++++..+|+|||||+|+ +++.++.+. +.|++++.|+..
T Consensus 231 ~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~~l~~ 309 (510)
T PRK00750 231 AALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRLFMFA 309 (510)
T ss_pred HHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHHHHHh
Confidence 3578999999999999 9999999998 99999999899999888889999999998 689998887 999999988875
Q ss_pred hcCCCCCCCCCCccccCCH-HHHHHHhcccccccccccccccccccccc-ccc-ccccccccccCCCCCCchhhhhhhHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSM-KDLVEKVCNNATYNRIKPTIKEFGIFWFQ-TFF-NEFDLQLVNENSCKVDLTNLNEFNRA 423 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~-eeli~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~F~~~~i~~~~a~fd~~KL~~~N~~ 423 (605)
.. +. ..+-.|+. ..+..+ |+.+.-....-+..--+ ... -.+.+.... |..+.+.-|.-+-+
T Consensus 310 ~~-~~------~~~~~f~~l~~~~de------y~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~l~~l~~- 373 (510)
T PRK00750 310 RP-KP------AKRLDFDVIPKLVDE------YDRFERKYFGQEEKKEEEELANPVYHIHNGN--PLPVPFRLLLNLAQ- 373 (510)
T ss_pred CC-CC------CCCCcccHHHHHHHH------HHHHHHHHhccccccchhhhhCceEEccCCC--CCCCCHHHHHHHHH-
Confidence 43 22 22333443 222220 00000000000000000 000 022221111 11122221111110
Q ss_pred HHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhcc-----ccchHhhhhhhhhccccCCCcCcc
Q psy16872 424 EIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASER-----IFKLQDLVGKDFAFIWVKPSIEHL 498 (605)
Q Consensus 424 ~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~r-----i~~l~dl~~~~~~ff~~~p~~~~~ 498 (605)
.... .+.+-+..++.-.... -.+|.++++. ..|||.+....+.
T Consensus 374 ----i~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~L~el~~~-A~~~~~d~~~~~~ 421 (510)
T PRK00750 374 ----IANA---------------------------EDKEVLWGFLKRYAPGATPETHPRLDRLVEY-AINWYRDFVAPEK 421 (510)
T ss_pred ----hcCC---------------------------CCHHHHHHHHHhcCCCCCcchhHHHHHHHHH-HHHHHHhcCCHHH
Confidence 0000 1222222222221111 1568899887 5555554321111
Q ss_pred CCCCccchhhHHHHHHHHHHHhhhhhhccCC-CCChhhHHHHHHHHH-HHhCCChhhHHHHHHHHHhCCCCCCCHHHHHH
Q psy16872 499 SQHPVESYGKVMLNLTLGILEHLIPRLQTCD-PFTRDSLATPLREFS-TEQGVEYSTFMKLLRTSLSGLKQGPSVGEMME 576 (605)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e-~~~~e~i~~~lk~~~-~e~giK~k~lf~pLRiALTG~~~GP~L~eim~ 576 (605)
..+.+ .+....+|.++.+.|+..+ +|+.++|++.+++++ ++.|+|++++|+|||+||||+.+||+|+++|+
T Consensus 422 ~~k~~-------~~~~~~~L~~l~~~L~~l~~~~~~e~i~~~i~~va~~~~gik~k~~f~pLR~aLtG~~~GP~L~~~i~ 494 (510)
T PRK00750 422 KYRAP-------TEKERAALEDLDDALRELADGADAEEIQNEIYEVAKKELGVNPRDWFKALYEVLLGQSQGPRLGSFIA 494 (510)
T ss_pred HhhcC-------CHhHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 11111 1223445555555555444 599999999999999 99999999999999999999999999999999
Q ss_pred HhCHHHHHHHHHHHH
Q psy16872 577 ILTKENTIRRLRDVL 591 (605)
Q Consensus 577 lLGkee~l~RL~~al 591 (605)
+||++++++||+.++
T Consensus 495 lLGke~vl~RL~~al 509 (510)
T PRK00750 495 LLGIDFVIALIREAL 509 (510)
T ss_pred HhCHHHHHHHHHHHh
Confidence 999999999999886
No 29
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.91 E-value=3.9e-22 Score=221.34 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHH
Q psy16872 512 NLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591 (605)
Q Consensus 512 ~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al 591 (605)
+....+|.++++.|++ .+|+.++|++.++++++++|+|++++|||||+||||+.+||+|+++|++||+++|++||+.|+
T Consensus 437 ~~~~~~L~~L~~~L~~-~~~~~e~Iq~~i~~vak~~gik~k~~F~~LR~aLtG~~~GP~L~~~i~lLGke~tl~RI~~a~ 515 (515)
T TIGR00467 437 ENSKKAINELAEFLKK-NFEVATEIHNLIYKISKENGIEPALAFQAIYKILLGKEYGPKLGGFIKILGIDRVEKRTSKYV 515 (515)
T ss_pred HHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHhhC
Confidence 3455667777777775 468999999999999999999999999999999999999999999999999999999999873
No 30
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.90 E-value=1.8e-23 Score=208.30 Aligned_cols=179 Identities=25% Similarity=0.312 Sum_probs=143.7
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC------------CCcHHHHHHHHHHHHHcCCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT------------RFVPEAVEKLEQDLKWIGVVPDES 138 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~------------R~~~~~~~~I~~~L~wlGl~~De~ 138 (605)
|.|+|+|||||+|++++-..+||- ++..++--++|.+.+ .....+.+.+.+++++||+.+|..
T Consensus 9 pN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d~~ 88 (212)
T cd00671 9 ANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFDVW 88 (212)
T ss_pred CCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcee
Confidence 588999999999999887777764 334555566677653 235677788999999999999976
Q ss_pred ccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCc
Q psy16872 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKY 218 (605)
Q Consensus 139 p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~ 218 (605)
+ +.|+..+...++++.|+++|.+|.- +|. .
T Consensus 89 ~---------~es~~~~~~~~~i~~L~~~g~~~~~-----------------------~g~------------------~ 118 (212)
T cd00671 89 F---------GESSYLGLMGKVVELLEELGLLYEE-----------------------DGA------------------L 118 (212)
T ss_pred c---------chhhhhhHHHHHHHHHHHCCCEEEe-----------------------CCc------------------E
Confidence 3 4666688889999999999999841 010 0
Q ss_pred eEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccch---hhhhhhhhcCCcceE--EcCCCCcccHHHHHHH
Q psy16872 219 CIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH---FANVVDDHHMNISHV--LRGVEWQISTTKHILI 293 (605)
Q Consensus 219 ~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~---fA~vVDD~~m~ITHV--IRG~d~l~stpkqi~l 293 (605)
+ +.+.. + ....|+||+||||.|||+ +|+++|++.+++||| |+|+||...+++|..+
T Consensus 119 ~--~~~~~----~-------------~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~ 179 (212)
T cd00671 119 W--LDLTE----F-------------GDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAA 179 (212)
T ss_pred E--Eechh----h-------------CCCCCeEEEECCCCccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHH
Confidence 1 11100 0 113699999999999999 799999999999999 8999999999999999
Q ss_pred HHHcCCC-CCcEEEe--cceecCCCccccccCC
Q psy16872 294 YKAFGWT-PPKFAHL--PLLLNLNGSKLSKRQG 323 (605)
Q Consensus 294 y~alG~~-~P~f~H~--plil~~dg~KLSKR~g 323 (605)
+++|||+ +|.+.|+ |++.+.+|+|||||+|
T Consensus 180 ~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 180 LELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred HHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 9999998 7789998 6888888999999986
No 31
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.87 E-value=2.2e-21 Score=214.14 Aligned_cols=239 Identities=23% Similarity=0.320 Sum_probs=173.3
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEeccCCCCCC-------------CcHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAK-----SHNGSFILRIEDTDQTR-------------FVPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar-----~~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L 128 (605)
.+|+.| |||+|++||||+|+++...+++| .++..|+..++|+|++- ....+.+.+.+++
T Consensus 20 ~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl 99 (465)
T TIGR00435 20 GKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDM 99 (465)
T ss_pred CcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 568888 69999999999999999999999 57789999999999742 1368899999999
Q ss_pred HHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeee------CCCHHHHHHHHHHHHhCCCCCCCCCcCcC
Q psy16872 129 KWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKC------FCSDSRLNLIRKDAVKSGLVPKYDNKCRN 202 (605)
Q Consensus 129 ~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C------fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ 202 (605)
++|||.+|... .+.|++.+.+.+++++|+++|+||.+ ||..+ .+.| |.+.+
T Consensus 100 ~~LgI~~d~~~--------~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~--------------~~~y-G~ls~ 156 (465)
T TIGR00435 100 KALNVLPPDLE--------PRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK--------------FKDY-GKLSK 156 (465)
T ss_pred HHhCCCCCcCC--------ccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc--------------cchh-ccCCC
Confidence 99999988731 26789999999999999999999964 34321 1334 33433
Q ss_pred CCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh---
Q psy16872 203 LTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV--- 266 (605)
Q Consensus 203 ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v--- 266 (605)
...++ +..|. |..++. .+.+..||+|||+ .|.|.||..|+
T Consensus 157 ~~~~~----~~~~~----~~~~~~----------------~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~ 212 (465)
T TIGR00435 157 QDLDQ----LEAGA----RVDVDE----------------AKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMN 212 (465)
T ss_pred CCHHH----Hhccc----ccCccc----------------ccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHH
Confidence 33332 23332 111111 1344578888874 48999999997
Q ss_pred -------hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCc-EEEecceecCCCccccccCCC-CChHHHHHcCCCH
Q psy16872 267 -------VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLP 337 (605)
Q Consensus 267 -------VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~P 337 (605)
+|=|..|+.|+. -|+.|...|-.. +.|.+.+. |.|..+ ++.+|+|||||.|+ +++.++.+. |.|
T Consensus 213 ~~~lg~~~Dih~gG~Dl~f---pHhene~aqs~a--~~g~~~~~~~~h~g~-v~~~g~KMSKS~GN~i~~~dll~~-~~~ 285 (465)
T TIGR00435 213 DKYLGDQIDIHGGGVDLIF---PHHENEIAQSEA--AFGKQLAKYWMHNGF-LMIDNEKMSKSLGNFFTVRDVLKN-YDP 285 (465)
T ss_pred HHhcCCCceeecccccccc---chHHHHHHHHHH--hcCCCCCcEEEEeeE-EEecCccccccCCCcCCHHHHHHH-CCH
Confidence 444555555554 345554444321 35754444 688776 67899999999998 689999988 999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 338 NALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 338 eAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|+|.|++... + ..+..||.+.|.+
T Consensus 286 dalR~~ll~~~--~------~~~l~fs~~~l~~ 310 (465)
T TIGR00435 286 EILRYFLLSVH--Y------RSPLDFSEELLEA 310 (465)
T ss_pred HHHHHHHHhCC--C------CCCCccCHHHHHH
Confidence 99999998643 3 4566788887666
No 32
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.87 E-value=3.8e-21 Score=212.26 Aligned_cols=237 Identities=19% Similarity=0.317 Sum_probs=169.9
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L 128 (605)
.+|+.| |+|+|++||||+|+++...++||. ++..|+..++|+|.+- ....+++.+.+++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 567778 699999999999999999999997 6789999999998742 2578999999999
Q ss_pred HHcCC-CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcC
Q psy16872 129 KWIGV-VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRN 202 (605)
Q Consensus 129 ~wlGl-~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ 202 (605)
++||| .+|..| +.|++.+.+.+++++|+++|+||. .||... .+.| |.-.+
T Consensus 102 ~~Lgi~~~d~~~---------r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~--------------~~~y-g~ls~ 157 (463)
T PRK00260 102 DALNVLPPDIEP---------RATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK--------------FPDY-GKLSG 157 (463)
T ss_pred HHcCCCCCCccc---------cccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc--------------cccc-ccCCC
Confidence 99999 556543 578999999999999999999995 466531 2345 33233
Q ss_pred CCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh---
Q psy16872 203 LTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV--- 266 (605)
Q Consensus 203 ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v--- 266 (605)
.+.++ +..|. |..+.. .+....||+|||. .|.|.||..|+
T Consensus 158 ~~~~~----~~~~~----~~~~~~----------------~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~ 213 (463)
T PRK00260 158 RNLDE----LQAGA----RVEVAE----------------EKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMS 213 (463)
T ss_pred CCHHH----HhccC----cCCccc----------------CCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 33333 23342 211111 1344578888874 58999999994
Q ss_pred -------hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCC
Q psy16872 267 -------VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFL 336 (605)
Q Consensus 267 -------VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~ 336 (605)
+|-|..|+.|+. =|+.|.-.|-. .++| .++ .|.|..+ ++.+|+||||+.|+ +++.++.+. |.
T Consensus 214 ~~~lg~~~Dih~gG~Dlif---pHh~neiaqs~--a~~g-~p~~~~w~H~g~-v~~~G~KMSKS~GN~i~~~dll~~-~~ 285 (463)
T PRK00260 214 TKYLGETFDIHGGGADLIF---PHHENEIAQSE--AATG-KPFANYWMHNGF-VTVNGEKMSKSLGNFFTIRDLLKK-YD 285 (463)
T ss_pred HHhcCCCcceecCccccCC---CchHhHHHHHH--HhcC-CCcceEEEEccE-EccCCCcccCcCCCCCCHHHHHHH-cC
Confidence 333444444333 16666444432 1357 443 4788876 67999999999998 689999987 99
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 337 PNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 337 PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|+++|.|++. + ++ ..+-.||.+.|.+
T Consensus 286 ~d~lR~~ll~-~-~~------~~~~~fs~~~l~~ 311 (463)
T PRK00260 286 PEVLRFFLLS-A-HY------RSPLNFSEEALEQ 311 (463)
T ss_pred chHhHHHHHh-C-CC------CCCCccCHHHHHH
Confidence 9999999985 3 23 4566788887555
No 33
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.84 E-value=5.4e-20 Score=202.16 Aligned_cols=242 Identities=19% Similarity=0.285 Sum_probs=180.1
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCC----------CCCC-------------CcH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDT----------DQTR-------------FVP 118 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDT----------D~~R-------------~~~ 118 (605)
.+|+.| ||++.++||||+||++...+++|. +...|+..|.|+ |++= ...
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 478999 699999999999999998888775 346899999999 6531 246
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCC
Q psy16872 119 EAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLV 193 (605)
Q Consensus 119 ~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~ 193 (605)
.+.+.+.++++.|||.++.. .| ..|++++...+++++|+++|+||. +||..+ .
T Consensus 100 ~~~~~f~~d~~~Lni~~~~~-------~p-~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--------------~ 157 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYPDK-------VL-VASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--------------F 157 (481)
T ss_pred HHHHHHHHHHHHcCCCCCce-------ec-CccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--------------c
Confidence 78889999999999998864 35 579999999999999999999995 555532 2
Q ss_pred CCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec----------------CC
Q psy16872 194 PKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS----------------DG 257 (605)
Q Consensus 194 ~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks----------------DG 257 (605)
+.|. ...+.+.++... ..|. |+.++.. +.++.||+|||. .|
T Consensus 158 ~~YG-~ls~~~l~~l~~--~~~~----~v~~~~~----------------K~np~DFaLWK~~~~~~~~~~~w~spWG~G 214 (481)
T PRK14534 158 KSYG-QMAGINLNDFKD--MSVS----RVEIDKS----------------KRNKSDFVLWFTNSKFKDQEMKWDSPWGFG 214 (481)
T ss_pred cchh-hhcCCCHHHHhh--hccC----cCCcccC----------------CCCcccchhcCcCCcCCCCCCeecCCCCCc
Confidence 3452 233344443210 0122 2222211 334567777752 38
Q ss_pred cccchhhhh----------hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC-cEEEecceecCCCccccccCCC-C
Q psy16872 258 FPTYHFANV----------VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-M 325 (605)
Q Consensus 258 ~PtY~fA~v----------VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P-~f~H~plil~~dg~KLSKR~g~-~ 325 (605)
+|.||..|+ +|-|..|+.|+. =|+.|-+.|.. -+.|.+.+ .|.|..+ +..+|+|||||.|+ +
T Consensus 215 rPgWHiECsam~~~~lg~~~DIH~GG~DliF---PHHene~Aqs~--a~~g~~~~~~W~H~g~-l~~~g~KMSKSlGN~i 288 (481)
T PRK14534 215 YPSWHLECAAMNLEYFKSTLDIHLGGVDHIG---VHHINEIAIAE--CYLNKKWCDMFVHGEF-LIMEYEKMSKSNNNFI 288 (481)
T ss_pred CCcHHHHHHHHHHHHcCCcceEEecccccCC---CcchhHHHHHh--hhcCCCcceEEEEecE-EEecCceecccCCCcc
Confidence 999999997 577889998887 47778888752 22476655 5799887 55789999999997 6
Q ss_pred ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 326 SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 326 sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+++++.++|+.|+++|.|+.... + ..+-.||.+.|.+
T Consensus 289 ~l~dll~~~~~~~alR~~lls~~--y------r~~l~Fs~e~l~~ 325 (481)
T PRK14534 289 TIKDLEDQGFSPLDFRYFCLTAH--Y------RTQLKFTFNNLKA 325 (481)
T ss_pred cHHHHHhcCCChhHHHHHHHhCC--C------CCCCCCCHHHHHH
Confidence 99999999999999999975433 4 5677899999888
No 34
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.84 E-value=5.9e-20 Score=202.62 Aligned_cols=240 Identities=17% Similarity=0.246 Sum_probs=178.7
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCC----------CCCC-------------CcH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDT----------DQTR-------------FVP 118 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDT----------D~~R-------------~~~ 118 (605)
.+|+.| ||+++++||||+|++|...+++|- +...|+..|.|+ |++- ...
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~ 101 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAA 101 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHH
Confidence 578999 699999999999999998888774 446899999999 6541 245
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCC
Q psy16872 119 EAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLV 193 (605)
Q Consensus 119 ~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~ 193 (605)
.+.+.+.++++.|||.++.. -| +.+++++...+++++|+++|+||. +||... .
T Consensus 102 ~~~~~f~~d~~~Lni~~~~~-------~~-rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~--------------~ 159 (490)
T PRK14536 102 HYTAAFFRDTARLNIERPSI-------VC-NATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT--------------F 159 (490)
T ss_pred HHHHHHHHHHHHcCCCCCce-------ec-CcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc--------------c
Confidence 78889999999999998653 13 679999999999999999999995 566521 2
Q ss_pred CCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec----------------CC
Q psy16872 194 PKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS----------------DG 257 (605)
Q Consensus 194 ~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks----------------DG 257 (605)
|.| |...+++.++. ..|. |..++. .+.+..||+|||. .|
T Consensus 160 ~~Y-G~Ls~~~~~~l----~~g~----~v~~~~----------------~K~np~DFaLWK~~~~~~~~~~~W~SpWG~G 214 (490)
T PRK14536 160 PSY-GSLASAAVEDL----QAGA----RIEHDT----------------NKRNPHDFVLWFTRSKFENHALTWDSPWGRG 214 (490)
T ss_pred cch-hhhcCCCHHHh----hcCC----cCCCCC----------------CCCCchhchhcccccCCCCCCCcccCCCCCC
Confidence 345 33334444432 2332 111111 1334567777752 38
Q ss_pred cccchhhhhh----------hhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC-cEEEecceecCCCccccccCCC-C
Q psy16872 258 FPTYHFANVV----------DDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-M 325 (605)
Q Consensus 258 ~PtY~fA~vV----------DD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P-~f~H~plil~~dg~KLSKR~g~-~ 325 (605)
.|.||..|++ |-|..|+.++. =|+.|.+.|..- +.|.+.+ .|.|..+ +..+|+|||||.|+ +
T Consensus 215 RPGWHIECsaMs~~~lg~~~DIH~GG~DliF---PHHeneiAqs~a--~~g~~~~~~w~h~g~-l~~~g~KMSKSlGN~i 288 (490)
T PRK14536 215 YPGWHIECSAMSMKYLGEQCDIHIGGVDHIR---VHHTNEIAQCEA--ATGKPWVRYWLHHEF-LLMNKGKMSKSAGQFL 288 (490)
T ss_pred CCChHHHHHHHHHHHcCCceeEEeccccCCC---cchhhHHHHHHH--hcCCCcceEEEEcCE-EeecCccccccCCCcc
Confidence 8999999974 67888888887 477777777521 2466545 4788877 67899999999997 6
Q ss_pred ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 326 SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 326 sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+++++.+.||.|+|+|.|+.... + .++-.||.+.|.+
T Consensus 289 tl~dll~~g~~~~alR~~lls~~--y------r~~l~Fs~e~l~~ 325 (490)
T PRK14536 289 TLSSLQEKGFQPLDYRFFLLGGH--Y------RSQLAFSWEALKT 325 (490)
T ss_pred cHHHHHhcCCCHHHHHHHHHhCC--C------CCCCCCCHHHHHH
Confidence 99999999999999999987643 4 5677899999888
No 35
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.9e-20 Score=202.49 Aligned_cols=242 Identities=21% Similarity=0.294 Sum_probs=177.8
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH---cC--CeEEEeccCCCCC---C----------CcHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS---HN--GSFILRIEDTDQT---R----------FVPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~---~~--G~fiLRiEDTD~~---R----------~~~~~~~~I~~~L 128 (605)
.+|++| ||++.+.||||+||+++-.++.|- .| .+|+..|.|+|.+ | ..+.++++..+|+
T Consensus 21 ~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~ 100 (464)
T COG0215 21 GKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDM 100 (464)
T ss_pred CeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 559999 699999999999999987666663 23 5899999999975 2 2467889999999
Q ss_pred HHcCCC-CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCC-CHHHHHHHHHHHHhCCCCCCCCCcCcCC-CH
Q psy16872 129 KWIGVV-PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFC-SDSRLNLIRKDAVKSGLVPKYDNKCRNL-TQ 205 (605)
Q Consensus 129 ~wlGl~-~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfc-s~e~l~~~r~~~~~~~~~~~Y~~~cr~l-s~ 205 (605)
+.||+. +|..| +.|++++..-+++++|+++|+||...- +-. . .....+.| |.+.+. +.
T Consensus 101 ~aL~v~~p~~~P---------raTe~I~~iI~~I~~LiekG~AY~~~~G~VY-F--------dv~~f~~Y-G~LS~~~~l 161 (464)
T COG0215 101 DALNVLPPDIEP---------RATEHIDEIIEFIEKLIEKGYAYVADDGDVY-F--------DVSKFKDY-GKLSGRDSL 161 (464)
T ss_pred HHhCCCCCcccC---------cHhhCHHHHHHHHHHHHHCCceEEecCCcEE-E--------ecccchhh-HhhcCCCCh
Confidence 999994 68776 689999999999999999999997411 100 0 00112345 333211 22
Q ss_pred HHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh------
Q psy16872 206 EQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV------ 266 (605)
Q Consensus 206 ~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v------ 266 (605)
++ +..|. |..+.. .+.++.||||||+ .|.|.||..|.
T Consensus 162 e~----l~~ga----r~~~~~----------------~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~ 217 (464)
T COG0215 162 EE----LQAGA----RVEVDE----------------EKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKY 217 (464)
T ss_pred hH----Hhhcc----cccccc----------------ccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHH
Confidence 32 22222 111111 1445689999994 48999999997
Q ss_pred ----hhhhcCCcceEEcCCCCcccHHHHHHHHHH-cCCCC--CcEEEecceecCCCccccccCCC-CChHHHHHcCCCHH
Q psy16872 267 ----VDDHHMNISHVLRGVEWQISTTKHILIYKA-FGWTP--PKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPN 338 (605)
Q Consensus 267 ----VDD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~~~--P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~Pe 338 (605)
+|-|-.|+.+++ =|+.|.-.| .+| .|-++ -.|.|..+ ++.+|+||||+-|+ ++|.++.+. |.|+
T Consensus 218 LG~~~DIHgGG~DLiF---PHHENEiAQ---sea~~g~~~~a~yWmH~G~-l~i~geKMSKSLGNfiti~d~l~~-~~p~ 289 (464)
T COG0215 218 LGETFDIHGGGSDLIF---PHHENEIAQ---SEAATGVKPFAKYWMHNGF-LNIDGEKMSKSLGNFITVRDLLKK-YDPE 289 (464)
T ss_pred hCCCcceecCcccccC---CCcccHHHH---HHhhhCCCcceeEeEEcce-eeecCcCcccccCCeeEHHHHHhh-cCHH
Confidence 477889999988 477787766 444 35332 25899998 88999999999998 699999999 9999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 339 ALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 339 Al~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+||.|+.... + .++..||-+-|.+
T Consensus 290 ~lR~~lls~H--Y------R~pl~fsee~L~~ 313 (464)
T COG0215 290 VLRLFLLSSH--Y------RSPLDFSEELLEE 313 (464)
T ss_pred HHHHHHHHHH--h------CCccccCHHHHHH
Confidence 9999998765 4 5677888777666
No 36
>PLN02946 cysteine-tRNA ligase
Probab=99.83 E-value=4.7e-20 Score=205.59 Aligned_cols=240 Identities=19% Similarity=0.269 Sum_probs=178.3
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~ 127 (605)
+.+|+.| ||++|++||||+|+++...+++|- +...|+..|+|+|.+= ....+.+.+.++
T Consensus 78 ~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d 157 (557)
T PLN02946 78 EGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD 157 (557)
T ss_pred CCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678999 699999999999999998888874 4569999999999741 246888999999
Q ss_pred HHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcC
Q psy16872 128 LKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRN 202 (605)
Q Consensus 128 L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ 202 (605)
++.|||..... --+.|++++...+++++|+++|+||. +||... .+.| |.-.+
T Consensus 158 ~~~LnI~~p~~--------~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~--------------f~~Y-G~Ls~ 214 (557)
T PLN02946 158 MAYLHCLPPSV--------EPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK--------------FPEY-GKLSG 214 (557)
T ss_pred HHHCCCCCCCe--------ecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc--------------chhh-hhcCC
Confidence 99999974432 12688999999999999999999995 555531 2345 22223
Q ss_pred CCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh---
Q psy16872 203 LTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV--- 266 (605)
Q Consensus 203 ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v--- 266 (605)
.+.++ +..|. |..++. .+.+..||+|||. .|.|.||..|.
T Consensus 215 ~~l~~----l~~g~----rv~~~~----------------~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs 270 (557)
T PLN02946 215 RKLED----NRAGE----RVAVDS----------------RKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMS 270 (557)
T ss_pred CChhH----hhcCC----CCCccc----------------ccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHH
Confidence 33332 23343 212111 1445679999984 58999999997
Q ss_pred -------hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCH
Q psy16872 267 -------VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLP 337 (605)
Q Consensus 267 -------VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~P 337 (605)
+|-|..||.|++ =|+.|.-.|.. .+.|.+.- .|.|..++. .+|+|||||.|+ ++++++.+. |.|
T Consensus 271 ~~~lG~~~DIH~GG~DL~F---PHHENEiAQse--a~~g~~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~-y~~ 343 (557)
T PLN02946 271 AAYLGHSFDIHGGGMDLVF---PHHENEIAQSC--AACCDSNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDL-YHP 343 (557)
T ss_pred HHHcCCCeeEeccccccCC---CcccchHHHHH--HHhCCCCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHh-cCc
Confidence 678899999998 47778766652 12454322 579999854 899999999998 699999987 999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 338 NALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 338 eAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+++|.|+.... + ..+..||.+.|..
T Consensus 344 dalR~~lLs~h--y------r~~l~fs~e~L~~ 368 (557)
T PLN02946 344 LALRLFLLGTH--Y------RSPINYSDVQLES 368 (557)
T ss_pred cceeeeeeccC--C------CCCcEecHHHHHH
Confidence 99999997643 4 4566788887665
No 37
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.82 E-value=5.7e-20 Score=205.18 Aligned_cols=224 Identities=24% Similarity=0.310 Sum_probs=166.6
Q ss_pred CceeEe--cCCCCcCChhhHHHHHHHHHHHHH--cCCe---EEEeccCCCC-------------CCCcHHHHHHHHHHHH
Q psy16872 70 LKLKHF--LTSTGLLHLGGLRTALYNYLFAKS--HNGS---FILRIEDTDQ-------------TRFVPEAVEKLEQDLK 129 (605)
Q Consensus 70 ~~v~~f--p~PtG~LHiG~~RtAL~n~l~Ar~--~~G~---fiLRiEDTD~-------------~R~~~~~~~~I~~~L~ 129 (605)
.++..| |+|+|+|||||+|++++.+.+||- ..|- ++--++|.+. .+.++.+.+.+.++|+
T Consensus 112 ~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (507)
T PRK01611 112 KVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLD 191 (507)
T ss_pred EEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 699999999999999999999986 3454 4455588874 3457889999999999
Q ss_pred HcCCCCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHH
Q psy16872 130 WIGVVPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQ 207 (605)
Q Consensus 130 wlGl~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e 207 (605)
|||+.+|..+ +.|+ +.+.+.++++.|.++|.+|.- ++|
T Consensus 192 ~LgI~~D~~~---------~es~~~~~~~~~~~~~~L~~~G~~y~~----------------------~~G--------- 231 (507)
T PRK01611 192 RLGVHFDVWF---------SESELYYNGKVDEVVEDLKEKGLLYVE----------------------SDG--------- 231 (507)
T ss_pred HcCCeeeEEe---------ecCcchhcchHHHHHHHHHHCCCEEEe----------------------eCC---------
Confidence 9999998643 2232 235789999999999999920 011
Q ss_pred HHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccch---hhhhhhhhcCCcceE--EcCCC
Q psy16872 208 IDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH---FANVVDDHHMNISHV--LRGVE 282 (605)
Q Consensus 208 ~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~---fA~vVDD~~m~ITHV--IRG~d 282 (605)
..+ |++.. |.| ..|+||+||||.|||. +|...+-+.. .+++ |.|.|
T Consensus 232 ---------a~~--~~~~~----~~~-------------~~~~vl~ksdG~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~ 282 (507)
T PRK01611 232 ---------ALW--VRLTE----FGD-------------DKDRVLIKSDGTYTYFTRDIAYHLYKFER-FDRVIYVVGAD 282 (507)
T ss_pred ---------cEE--EEchh----hCC-------------CCCeEEEECCCCccchHHHHHHHHHHHhh-cCEEEEEECCC
Confidence 011 12110 101 1489999999999997 5554444433 4666 58999
Q ss_pred CcccHHHHHHHHHHcCCCCCc---EEEe--cceecCCCccccccCCC-CChHHHHHcCCCH----------------HHH
Q psy16872 283 WQISTTKHILIYKAFGWTPPK---FAHL--PLLLNLNGSKLSKRQGD-MSVEAIRNSEFLP----------------NAL 340 (605)
Q Consensus 283 ~l~stpkqi~ly~alG~~~P~---f~H~--plil~~dg~KLSKR~g~-~sv~~~r~~G~~P----------------eAl 340 (605)
|....+++..+.++||+.++. +.|. .++++.+|+|||||.|. +++.++.++++.. +|+
T Consensus 283 q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAi 362 (507)
T PRK01611 283 HHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAV 362 (507)
T ss_pred hHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhcccee
Confidence 999999999999999998553 7884 47889999999999996 6999999997777 888
Q ss_pred HHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 341 INFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 341 ~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.|+.... . ..+-.|+++.+..
T Consensus 363 R~~~L~~~--~------~~~~~Fd~~~~~~ 384 (507)
T PRK01611 363 RYFDLSRS--R------DKDLDFDLDLALS 384 (507)
T ss_pred EehhhhcC--C------CCCCccCHHHHHh
Confidence 88876542 2 4566899998876
No 38
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.81 E-value=4.9e-19 Score=190.31 Aligned_cols=250 Identities=17% Similarity=0.224 Sum_probs=175.2
Q ss_pred ceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHHHH
Q psy16872 71 KLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQDLK 129 (605)
Q Consensus 71 ~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L~ 129 (605)
+|+.| |||.|++||||+|++|...+++|- +...|+..|+|.|.+= ....+.+.+.++++
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 78889 699999999999999998888875 3468999999998752 24678889999999
Q ss_pred HcCC-CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCH-HHHHHHHHHHHhCCCCCCCCCcCcCCCHHH
Q psy16872 130 WIGV-VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSD-SRLNLIRKDAVKSGLVPKYDNKCRNLTQEQ 207 (605)
Q Consensus 130 wlGl-~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~-e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e 207 (605)
.||| .+|-.| +.|+.++..++++++|+++|+||.---.+ ..+ + -.-...+.| |...+...++
T Consensus 89 ~Lni~~~~~~~---------raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~V--Y----Fdv~~~~~Y-G~ls~~~~~~ 152 (384)
T PRK12418 89 ALRVLPPRDYV---------GAVESIPEVVELVEKLLASGAAYVVDDEEYPDV--Y----FSVDATPQF-GYESGYDRAT 152 (384)
T ss_pred HhCCCCCCccc---------cCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccE--E----EecCchhhc-ccccCCCHHH
Confidence 9997 677654 78899999999999999999999621100 000 0 000112345 4444444444
Q ss_pred HHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh--------
Q psy16872 208 IDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV-------- 266 (605)
Q Consensus 208 ~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v-------- 266 (605)
....+ |. |. ++. .| ..+.++.||+|||+ .|.|.||..|+
T Consensus 153 ~~~~~--~~----~~-~~~-----~~--------~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg 212 (384)
T PRK12418 153 MLELF--AE----RG-GDP-----DR--------PGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLG 212 (384)
T ss_pred HHhhh--cc----cc-cCc-----cc--------ccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcC
Confidence 32110 11 10 000 00 01345678999884 58999999996
Q ss_pred --hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHH
Q psy16872 267 --VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALI 341 (605)
Q Consensus 267 --VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~ 341 (605)
+|-|..|+.|+. =|+.|.-.|-. .++|-. .+ .|.|..+ ++.+|+||||+.|+ +++.++.+.|+.|+++|
T Consensus 213 ~~~DIH~GG~DL~F---PHHeneiaq~~--a~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR 286 (384)
T PRK12418 213 SGFDIQGGGSDLIF---PHHEFSAAHAE--AATGERRFARHYVHAGM-IGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIR 286 (384)
T ss_pred CCcccccCcccccc---chhHhHHHHHH--HhcCCCCcceEEEECCE-ECCCCCcccCcCCCcCCHHHHHhccCChhhee
Confidence 577888888887 37777666642 124642 23 4788775 78999999999998 79999998999999999
Q ss_pred HHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 342 NFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 342 nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.|++.. ++ ..+..||.+.|.+
T Consensus 287 ~~lls~--~y------r~~l~fs~e~l~~ 307 (384)
T PRK12418 287 LALLAG--HY------RADREWTDAVLAE 307 (384)
T ss_pred EEEecc--CC------CCCcccCHHHHHH
Confidence 998632 34 4566788888766
No 39
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.81 E-value=1e-18 Score=196.53 Aligned_cols=239 Identities=18% Similarity=0.326 Sum_probs=178.3
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~ 127 (605)
+.+|+.| |||++++||||+|+++...+++|. +...|+..|+|+|.+- ....+.+.+.++
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678999 699999999999999998888884 4469999999999752 246788999999
Q ss_pred HHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee------eCCCHHHHHHHHHHHHhCCCCCCCCCcCc
Q psy16872 128 LKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK------CFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201 (605)
Q Consensus 128 L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~------Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr 201 (605)
++.|||..+..- | +.|++++...+++++|+++|+||. +||... .+.| |...
T Consensus 326 ~~~LnI~~p~~~-------p-raTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~--------------f~~Y-G~LS 382 (699)
T PRK14535 326 ADALGVLRPDIE-------P-KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE--------------FAAY-GQLS 382 (699)
T ss_pred HHHcCCCCCcEe-------e-CccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc--------------cccc-cccc
Confidence 999999987631 2 578999999999999999999994 456531 2445 3333
Q ss_pred CCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh--
Q psy16872 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV-- 266 (605)
Q Consensus 202 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v-- 266 (605)
+.+.++ +..|. |..++. .+....||+|||+ .|.|.||..|+
T Consensus 383 ~~~~~~----l~~g~----rve~d~----------------~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAM 438 (699)
T PRK14535 383 GKSLDD----LRAGE----RVEVDG----------------FKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAM 438 (699)
T ss_pred CCChHH----hcCCC----cccccc----------------ccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHH
Confidence 344433 23333 111111 1345679999983 58999999997
Q ss_pred --------hhhhcCCcceEEcCCCCcccHHHHHHHHHH-cCCC------------C--C---cEEEecceecCCCccccc
Q psy16872 267 --------VDDHHMNISHVLRGVEWQISTTKHILIYKA-FGWT------------P--P---KFAHLPLLLNLNGSKLSK 320 (605)
Q Consensus 267 --------VDD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~~------------~--P---~f~H~plil~~dg~KLSK 320 (605)
+|-|..||.|++ =|+.|--.|- +| .|.+ . | .|.|..++. .+|+||||
T Consensus 439 s~~~LG~~~DIHgGG~DLiF---PHHENEiAQs---eA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSK 511 (699)
T PRK14535 439 SENLFGDTFDIHGGGADLQF---PHHENEIAQS---VGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSK 511 (699)
T ss_pred HHHHcCCcceeECCccccCC---CCCccHHHHH---HHhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCC
Confidence 578999999998 4888866664 43 3542 1 1 589999854 89999999
Q ss_pred cCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 321 RQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 321 R~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.|+ +++.++.+. |.|+++|.|++... + ..+..||.+.|.+
T Consensus 512 SLGN~it~~dlLe~-ygpdalRl~lLssh--Y------RspL~fS~e~Le~ 553 (699)
T PRK14535 512 SLGNFFTIREVLKQ-YDPEVVRFFILRAH--Y------RSPLNYSDAHLDD 553 (699)
T ss_pred CCCCcCCHHHHHHh-CCHHHHHHHHHcCC--C------CCCCCcCHHHHHH
Confidence 9998 689999987 99999999998633 4 4556788776655
No 40
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.80 E-value=1.4e-19 Score=187.31 Aligned_cols=245 Identities=22% Similarity=0.322 Sum_probs=153.5
Q ss_pred CCCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHH
Q psy16872 68 IPLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQ 126 (605)
Q Consensus 68 ~~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~ 126 (605)
.+.+|+.| ||+..+.||||+||+++-.++.|- +..+++..|.|+|.+- ....+++.+.+
T Consensus 5 ~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 5 NPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp CTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 35779999 699999999999999987666654 4579999999999641 24688999999
Q ss_pred HHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeC-CCHHHHHHHHHHHHhCCCCCCCCCcCcCCCH
Q psy16872 127 DLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCF-CSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205 (605)
Q Consensus 127 ~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cf-cs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~ 205 (605)
||+.|||...... -+.||+++...+++++|+++|+||.-- -+-- -.-.+.+.| |.-.+...
T Consensus 85 dm~~Lnv~~p~~~--------prate~i~~ii~~i~~Li~~G~AY~~~~g~VY---------Fdv~~~~~Y-G~Ls~~~~ 146 (300)
T PF01406_consen 85 DMKALNVLPPDHY--------PRATEHIPEIIELIEKLIDKGHAYESEDGSVY---------FDVSKFPDY-GKLSNQDL 146 (300)
T ss_dssp HHHHTT----SEE--------EEGGGGHHHHHHHHHHHHHTTSEEEETTSEEE---------E-CCGSTTT-TTTTT-SH
T ss_pred HHHHcCCCCCccc--------cchhccHHHHHHHHHHHHHCCCeEEcCCCcEE---------Eeecccccc-ccccccch
Confidence 9999999885431 278999999999999999999999742 1000 000112455 33333444
Q ss_pred HHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhhh-----
Q psy16872 206 EQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANVV----- 267 (605)
Q Consensus 206 ~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~vV----- 267 (605)
+++. .|.. ..+. ..+....||+|||. .|.|.||..|++
T Consensus 147 ~~l~----~~~~----~~~~----------------~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~ 202 (300)
T PF01406_consen 147 EDLE----AGAR----VEVD----------------YEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKY 202 (300)
T ss_dssp HHHH----HCHH----HTT-----------------TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHH
T ss_pred hhHH----hhhh----cccc----------------cccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHH
Confidence 4332 2210 0000 11445689999984 589999999974
Q ss_pred -----hhhcCCcceEEcCCCCcccHHHHHHHHHHc-CCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHH
Q psy16872 268 -----DDHHMNISHVLRGVEWQISTTKHILIYKAF-GWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNA 339 (605)
Q Consensus 268 -----DD~~m~ITHVIRG~d~l~stpkqi~ly~al-G~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeA 339 (605)
|-|..|+.|+. =|+.|.- +..+|+ |-+.. .|.|..+ ++.+|+||||+.|+ ++|+++.+. |.|++
T Consensus 203 lG~~~DIH~GG~DL~F---PHHENEi---Aqs~a~~g~~~a~~W~H~g~-l~~~g~KMSKSlgN~~~i~dll~~-~~~~~ 274 (300)
T PF01406_consen 203 LGDTFDIHGGGIDLIF---PHHENEI---AQSEAATGKPFANYWMHNGH-LNVDGEKMSKSLGNFITIRDLLKK-YSPDA 274 (300)
T ss_dssp HTTSEEEEEEEGGGTT---THHHHHH---HHHHHHHSS-SEEEEEEE---EEETTCE--TTTT---BHHHHHTT-S-HHH
T ss_pred cCCCceEEccccccCC---CCccchH---HHHHHhhCchHHHHHHHHHH-HhhcCccccccCCCEEEHHHHhhc-CCHHH
Confidence 44555555554 2444433 344554 62222 5899998 66799999999997 699999976 99999
Q ss_pred HHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 340 l~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|.|+..-. + +.+..||.+.|.+
T Consensus 275 lR~~~l~~h--Y------r~~l~~s~~~l~~ 297 (300)
T PF01406_consen 275 LRLFLLSTH--Y------RKPLNFSEENLEE 297 (300)
T ss_dssp HHHHHHTS---T------TS-EEE-HHHHHH
T ss_pred HHHHHhcCC--C------CCccccCHHHHHH
Confidence 999986544 4 4677888887765
No 41
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.78 E-value=2.8e-18 Score=185.48 Aligned_cols=251 Identities=16% Similarity=0.213 Sum_probs=170.8
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~ 127 (605)
+.+|+.| |+|++++||||+|+++...+++|- +...|+..|+|.|.+= ....+.+.+.++
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d 113 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED 113 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678889 699999999999999999888884 4468999999999751 235788889999
Q ss_pred HHHcCCC-CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCH-HHHHHHHHHHHhCCCCCCCCCcCcCCCH
Q psy16872 128 LKWIGVV-PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSD-SRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205 (605)
Q Consensus 128 L~wlGl~-~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~-e~l~~~r~~~~~~~~~~~Y~~~cr~ls~ 205 (605)
++.||+. +|..| +.|+..+...+++++|+++|+||.-.-.. ..+ + -.-...+.| |.-.+.+.
T Consensus 114 ~~~Lni~~~d~~~---------RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~V--Y----Fdv~~~~~Y-G~Ls~~~~ 177 (411)
T TIGR03447 114 MEALRVLPPRDYI---------GAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDV--Y----FSIEATEQF-GYESGYDR 177 (411)
T ss_pred HHHcCCCCCCccc---------CCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcE--E----Eeccchhcc-ccccCCCH
Confidence 9999976 66653 68999999999999999999999521100 000 0 000012334 22233444
Q ss_pred HHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhhh-----
Q psy16872 206 EQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANVV----- 267 (605)
Q Consensus 206 ~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~vV----- 267 (605)
++...-+ +.. . ...++ ..+.+..||+|||+ .|.|.||..|++
T Consensus 178 ~~~~~~~--~~~-~--~~~~~---------------~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~ 237 (411)
T TIGR03447 178 ATMLELF--AER-G--GDPDR---------------PGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNR 237 (411)
T ss_pred HHHHhhh--ccc-c--cCccc---------------ccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHH
Confidence 4322100 110 0 01100 01345679999984 599999999974
Q ss_pred -----hhhcCCcceEEcCCCCcccHHHHHHHHHH-cCC-CCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHH
Q psy16872 268 -----DDHHMNISHVLRGVEWQISTTKHILIYKA-FGW-TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPN 338 (605)
Q Consensus 268 -----DD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~-~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~Pe 338 (605)
|-|..|+.++. =|+.|.-.|- +| .|- +.+ .|.|..+ ++.+|+||||+.|+ +++.++.+.|+.|+
T Consensus 238 lg~~~Dih~GG~DLif---pHheneiaq~---~A~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~dl~~~g~dp~ 310 (411)
T TIGR03447 238 LGAGFDIQGGGSDLIF---PHHEFSAAHA---EAATGVRRMARHYVHAGM-IGLDGEKMSKSLGNLVFVSKLRAAGVDPA 310 (411)
T ss_pred cCCceecccCcccccc---cchHhHHHHH---HHhcCCCCcceEEEECCE-ECcCCCCccCcCCCCCCHHHHHhcCCCcc
Confidence 55556666655 2555544443 33 454 333 4788876 78999999999998 69999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 339 ALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 339 Al~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++|.|++.. .+ ..+..||.+.|.+
T Consensus 311 ~lRl~lls~--~Y------r~pl~fs~e~l~~ 334 (411)
T TIGR03447 311 AIRLGLLAG--HY------RQDRDWTDAVLAE 334 (411)
T ss_pred cEEEEEecC--CC------CCCCccCHHHHHH
Confidence 999999632 34 4566788877766
No 42
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.69 E-value=3.2e-16 Score=179.12 Aligned_cols=245 Identities=19% Similarity=0.261 Sum_probs=168.9
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH------cCCeEEEeccCCCCCC--------------CcHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS------HNGSFILRIEDTDQTR--------------FVPEAVEKLE 125 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~------~~G~fiLRiEDTD~~R--------------~~~~~~~~I~ 125 (605)
+.+|+.| ||++++.|||||||++...+++|- +...|+..|+|+|.+= ....+++.+.
T Consensus 58 ~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 58 GRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3578999 688899999999999998888773 3369999999999751 1247888999
Q ss_pred HHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcC
Q psy16872 126 QDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKC 200 (605)
Q Consensus 126 ~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~c 200 (605)
++++.|||.++... | +.|++++...+++++|+++|+||. .|+... .+. . ...|.
T Consensus 138 ~d~~~Lni~~p~~~-------~-r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~----f~~---~---~~~Yg--- 196 (651)
T PTZ00399 138 EDMKALNVRPPDVI-------T-RVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA----FRK---A---GHVYP--- 196 (651)
T ss_pred HHHHHcCCCCCccc-------c-CcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh----ccc---c---hhhHH---
Confidence 99999999886542 2 459999999999999999999995 344321 000 0 01231
Q ss_pred cCCCHHHH--HHHHhcCCCceEEE-EcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhh
Q psy16872 201 RNLTQEQI--DEKLKENSKYCIRF-KLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFA 264 (605)
Q Consensus 201 r~ls~~e~--~~~~~~g~~~~iR~-k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA 264 (605)
.|+++.. ...+..|... + .+.. .+....||+|||. .|.|.||..
T Consensus 197 -~L~p~~~~~~~~~~~g~~~---l~~~~~----------------~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiE 256 (651)
T PTZ00399 197 -KLEPESVADEDRIAEGEGA---LGKVSG----------------EKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIE 256 (651)
T ss_pred -hhChhhcCCHHHHhcccCC---ccccCc----------------CCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHH
Confidence 2433211 1112223210 1 0000 1223456666652 489999998
Q ss_pred hh----------hhhhcCCcceEEcCCCCcccHHHHHHHHHH-cCC-CCC-cEEEecceecCCCccccccCCC-CChHHH
Q psy16872 265 NV----------VDDHHMNISHVLRGVEWQISTTKHILIYKA-FGW-TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAI 330 (605)
Q Consensus 265 ~v----------VDD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~-~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~ 330 (605)
|. +|-|-.||.+++ =|+.|.-.|- +| +|- +.+ .|.|.+. ++.+|.|||||.|+ +++.++
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~F---PHHeNEiAQs---eA~~~~~~~v~y~~H~G~-L~i~G~KMSKSLGNfItp~dl 329 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKF---PHHDNELAQS---EAYFDKHQWVNYFLHSGH-LHIKGLKMSKSLKNFITIRQA 329 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCC---CcchhHHHHH---HHhhCCCCCCcEEEEEEE-EEeccchhhhcCCCcccHHHH
Confidence 86 456777777776 3666655554 33 343 223 5799888 77899999999998 799999
Q ss_pred HHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 331 RNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 331 r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.+. |.|+++|.|++.. ++ ..+..||.+.|.+
T Consensus 330 Lek-ygaDaLR~~lLs~--~~------~~dldFS~e~l~~ 360 (651)
T PTZ00399 330 LSK-YTARQIRLLFLLH--KW------DKPMNYSDESMDE 360 (651)
T ss_pred HHH-cChHHHHHHHHhc--CC------CCCCccCHHHHHH
Confidence 998 9999999999754 34 4567799988766
No 43
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.60 E-value=1.7e-15 Score=141.66 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=58.8
Q ss_pred chhhhhhhhhcCCc---ceEEcCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecCCCccccccC
Q psy16872 261 YHFANVVDDHHMNI---SHVLRGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNLNGSKLSKRQ 322 (605)
Q Consensus 261 Y~fA~vVDD~~m~I---THVIRG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~dg~KLSKR~ 322 (605)
|++.+++|+...++ ||+++|.||..+...+..+.+++|+. .|.+.|.+++...+|+|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 99999999999999 99999999999999999999999886 6899999999998999999985
No 44
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.58 E-value=2.7e-14 Score=159.33 Aligned_cols=265 Identities=16% Similarity=0.189 Sum_probs=150.0
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~ 134 (605)
+-.|||||.+||||+|+.+...+++|.. ...|+.-+||.|.+ .....+.+.|.++|+.|||+
T Consensus 7 ~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~ 86 (511)
T PRK11893 7 TPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNIS 86 (511)
T ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3347999999999999999999988864 34677788887652 23567889999999999999
Q ss_pred CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcC-------
Q psy16872 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRN------- 202 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~------- 202 (605)
+|..+. -.+.++.+..+++.++|.++|++|. .||..++.-. .......+. | +...|..
T Consensus 87 ~D~~~~-------t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l-~~~~l~~~~-p-~~~~~~~~~~~~~~ 156 (511)
T PRK11893 87 YDDFIR-------TTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFY-TESELIEDG-Y-RCPPTGAPVEWVEE 156 (511)
T ss_pred cCCcee-------CCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccC-CHHHhcCCC-C-CCCCCCCcceEEec
Confidence 997431 1233478889999999999999996 3444331100 000000110 1 1222321
Q ss_pred ------CCH--HHHHHHHhcCCCceEEEEcCCCc-cceeccccceeeecCCCCCCCcEEEe-------------------
Q psy16872 203 ------LTQ--EQIDEKLKENSKYCIRFKLTNHT-ESWQDLVYGDISYNVFHNEGDPVIIK------------------- 254 (605)
Q Consensus 203 ------ls~--~e~~~~~~~g~~~~iR~k~~~~~-~~~~D~v~G~i~~~~~~~~~D~Vi~k------------------- 254 (605)
++. +++.+....+.. +.. |... -.+.+.+ +....|+.|.|
T Consensus 157 ~~~f~~l~~~~~~l~~~~~~~~~---~~~-p~~~~~~~~~~l--------~~~~~D~~isR~~~~WGipiP~~~~~~~~v 224 (511)
T PRK11893 157 ESYFFRLSKYQDKLLELYEANPD---FIQ-PASRRNEVISFV--------KSGLKDLSISRTNFDWGIPVPGDPKHVIYV 224 (511)
T ss_pred CeEEEEcHHHHHHHHHHHHhCCC---ccC-CHHHHHHHHHHH--------HCCCCCcccCCCCCCCCccCCCCCCceEEE
Confidence 111 112221111100 000 0000 0000000 01123444444
Q ss_pred c-CCcccchhh------hh-----hhhhc-CCcceEEcCCCCccc-HHHHHHHHHHcCCCCC-cEEEecceecCCCcccc
Q psy16872 255 S-DGFPTYHFA------NV-----VDDHH-MNISHVLRGVEWQIS-TTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 255 s-DG~PtY~fA------~v-----VDD~~-m~ITHVIRG~d~l~s-tpkqi~ly~alG~~~P-~f~H~plil~~dg~KLS 319 (605)
+ |....|.-+ +. ...+. ..+ |++ |.|.+.. +.-..++..++|.+.| .+.|+.+++ .+|+|||
T Consensus 225 Wfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~-~~~-G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G~KMS 301 (511)
T PRK11893 225 WFDALTNYLTALGYPDDEELLAELFNKYWPADV-HLI-GKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDGEKMS 301 (511)
T ss_pred EecCcHHHHhHhccccccccchhHHHhcCCCcc-eEe-cccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECCeeec
Confidence 1 111111111 11 01111 111 444 7776642 0011233345687777 467777765 5899999
Q ss_pred ccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 320 KRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 320 KR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||.|+ +++.++.+. |.++|+|.|++..+ .. ..+..||.+++.+
T Consensus 302 KS~GN~i~~~dll~~-~g~DalR~~ll~~~-~~------~~d~~Fs~~~~~~ 345 (511)
T PRK11893 302 KSLGNVIDPFDLVDE-YGVDAVRYFLLREI-PF------GQDGDFSREAFIN 345 (511)
T ss_pred ccCCcEEcHHHHHHH-cCcHHHHHHHHhcC-CC------CcCCCCCHHHHHH
Confidence 99998 689999988 99999999999875 12 4556799998755
No 45
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.9e-13 Score=149.03 Aligned_cols=447 Identities=19% Similarity=0.239 Sum_probs=228.2
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QS 151 (605)
+|||..||||.|-.+-.++.+|.. .-++|-=-||-|+-|.++..+..-..-=+.||....+.|+--|-++.| +
T Consensus 28 sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~G~~~Sy--a 105 (521)
T COG1384 28 SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPFGCCDSY--A 105 (521)
T ss_pred CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCccccchH--H
Confidence 899999999999877777777763 458888999999998766554433333357899999988766655554 3
Q ss_pred ccHHHHHHHHHHHHHCCCEeeeCCCHHHH-------HHH-----HH-HH-----HhCCCC---------CCCCCcCcCCC
Q psy16872 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRL-------NLI-----RK-DA-----VKSGLV---------PKYDNKCRNLT 204 (605)
Q Consensus 152 er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l-------~~~-----r~-~~-----~~~~~~---------~~Y~~~cr~ls 204 (605)
+|+. +.+.+.|-.-|--|. +-+..++ +.. |. +. .-.|.+ |.+ -.|-...
T Consensus 106 ~hf~--~~f~~~l~~~Gi~~E-~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~~~~e~~~P~~piC-~kcGri~ 181 (521)
T COG1384 106 EHFL--RPFEEFLDEFGIEVE-FVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGRELEEDWSPFMPIC-EKCGRIL 181 (521)
T ss_pred HHHH--HHHHHHHHhcCCceE-EEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCCcccCCceeccccc-cccCCcc
Confidence 3332 234444445554332 2222211 000 10 00 001110 111 1122110
Q ss_pred HHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCc
Q psy16872 205 QEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQ 284 (605)
Q Consensus 205 ~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l 284 (605)
..++.+ -++. .+|+.+-..+.....|+-.|.+..++ |=| +|+= ++ ..|||-=-=|.||.
T Consensus 182 ~t~v~~--~d~~-~~v~Y~Ce~Gh~g~v~ir~g~~KL~W----------Rvd-Wp~R-W~------~lgVd~EPfGKDH~ 240 (521)
T COG1384 182 TTPVIE--WDGE-GTVEYRCECGHEGEVDIRGGEGKLPW----------RVD-WPMR-WA------ALGVDFEPFGKDHA 240 (521)
T ss_pred eeEEEE--ecCC-ceEEEEecCCccceeeccccCccccc----------CcC-ccch-hh------ccCcccccCCcccc
Confidence 000000 0011 23333333222222222222211111 101 2221 11 12333333588888
Q ss_pred ccHHHH---HHHH-HHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCc
Q psy16872 285 ISTTKH---ILIY-KAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSK 359 (605)
Q Consensus 285 ~stpkq---i~ly-~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~ 359 (605)
++---+ ..|. +-+|+++|.=.-.-+++...|.||||++|. +++++..+- +.||-|+.|+++-- + ..
T Consensus 241 a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~i~~~dwlev-~~pE~lry~~~r~k--P------~r 311 (521)
T COG1384 241 AAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIARTK--P------NR 311 (521)
T ss_pred cccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCcEEcHHHHHHh-cCHhHeeeeeeecC--C------Cc
Confidence 743222 2233 468999984222223344557899999997 699999887 78888888776532 2 12
Q ss_pred cccCCHHH----HHHHhccc-ccccccccccccccccccccccccccccccccCC----CCCCchhhhhhhHHHHHhhcc
Q psy16872 360 SQLFSMKD----LVEKVCNN-ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENS----CKVDLTNLNEFNRAEIRRVMS 430 (605)
Q Consensus 360 ~e~~s~ee----li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~----a~fd~~KL~~~N~~~i~~~~~ 430 (605)
.-.|+++. +.++.-.. -.|--.+. -- +.+.+.+.+-++++..-| ..+.+.-|.- |-+...
T Consensus 312 ~~~~d~~~~il~lvDEydr~e~~Y~~~e~----~~--~~e~~~r~yels~~~~pP~~~~~~vpFr~l~~-----l~qi~~ 380 (521)
T COG1384 312 HIDFDFDLGILKLVDEYDRLERIYFGEED----AK--EDERLKRIYELSHPGNPPERLPYQVPFRHLAV-----LVQIAN 380 (521)
T ss_pred ceecCCCCChhHHHHHHHHHHHHHhcccc----ch--hhhhhcCeEEeecCCCCcccCCCCCCHHHHHH-----HHHHcC
Confidence 22233322 22210000 00000000 00 334445556565555533 2233333321 112211
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccchHhhhhhhhhccccCCCcCccCCCCccchhhHH
Q psy16872 431 TGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVM 510 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~ 510 (605)
.+ ..+++..+.. .+.......+.+++...+..+++ =+.+... ..++|..++.... ..+ .
T Consensus 381 ~~----~e~il~~~~~----~~~~~~~~~~~~~l~~~i~~A~~---W~~~yaP--~~~kf~~~e~~~~--~el------s 439 (521)
T COG1384 381 AE----EEDILEILIR----RYLPDADPDTIEDLDERIEYAIN---WLRDYAP--EKVKFSILEKPPE--AEL------S 439 (521)
T ss_pred Cc----hHHHHHHHHH----hccCCCChhhHHHHHHHHHHHHH---HHHHhCc--cceeecccccccc--chh------c
Confidence 11 0233333332 22222222233444444433332 2334433 2333332221110 011 1
Q ss_pred HHHHHHHHHhhhhhhccCCCCChh-hHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 511 LNLTLGILEHLIPRLQTCDPFTRD-SLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 511 ~~~~l~lL~~~l~~L~~~e~~~~e-~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
....+++|.++++.+++.+.+..| +++..+.+++++.++.++.+|+.++.+|.|+.+||.++.+|.+||++++.+||+.
T Consensus 440 ~~~~~~~L~~~a~~les~~~~~~e~~~~~~vy~~a~~~~~~~~~~F~~~Y~vliGk~~GPRlg~Fla~lg~dfv~~rir~ 519 (521)
T COG1384 440 EDAKLEALEDLAEFLESIQKASLEVELHNEVYEVAKKKGILPRAFFQALYRVLIGKERGPRLGSFLALLGVDFVIRRIRL 519 (521)
T ss_pred hHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCccHHHHHHHhChHHHHHHHHh
Confidence 122336677766777765556545 8999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q psy16872 590 VL 591 (605)
Q Consensus 590 al 591 (605)
++
T Consensus 520 ~~ 521 (521)
T COG1384 520 AL 521 (521)
T ss_pred cC
Confidence 63
No 46
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.1e-13 Score=152.68 Aligned_cols=265 Identities=25% Similarity=0.338 Sum_probs=168.2
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||++|.|-...+||-. .|.=++=+-.||. +-.+..+.+.+.++++||+|++|.
T Consensus 14 pY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD~ 93 (558)
T COG0143 14 PYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFDN 93 (558)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 5999999999999999999999964 5777776666763 334567888899999999999998
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHH-HHHHHHhCCCCC----------CCCCcC-
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNL-IRKDAVKSGLVP----------KYDNKC- 200 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~-~r~~~~~~~~~~----------~Y~~~c- 200 (605)
. +....+++.+.-+++.++|.++|..|. -||.+.+.-. .|. -.|.-| .|++ |
T Consensus 94 F-------~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~---v~g~cp~cg~~~arGD~Ce~-Cg 162 (558)
T COG0143 94 F-------IRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRY---VEGTCPKCGGEDARGDQCEN-CG 162 (558)
T ss_pred c-------ccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchh---eeccCCCcCccccCcchhhh-cc
Confidence 5 445666788899999999999999985 3454443211 110 011111 2333 4
Q ss_pred cCCCHHHHHH--HHhcCCCceEE------EEcCCCccceeccccceeeec----------------CCCCCCCcEEEe--
Q psy16872 201 RNLTQEQIDE--KLKENSKYCIR------FKLTNHTESWQDLVYGDISYN----------------VFHNEGDPVIIK-- 254 (605)
Q Consensus 201 r~ls~~e~~~--~~~~g~~~~iR------~k~~~~~~~~~D~v~G~i~~~----------------~~~~~~D~Vi~k-- 254 (605)
+.++|.+..+ -..+|..+++| |+++. |.|.+...+..+ .+....|.-|-|
T Consensus 163 ~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~----~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~ 238 (558)
T COG0143 163 RTLDPTELINPVCVISGATPEVREEEHYFFRLSK----FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTD 238 (558)
T ss_pred CcCCchhcCCCeeEeeCCCcccccceeEEEEHHH----hHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCC
Confidence 4567765311 11233333333 44431 111111111000 011223333333
Q ss_pred -----------------c-CCcccch-----hh-----hhh-----hhhcCCcceEEcCCCCcccHHHHHHHHHHc----
Q psy16872 255 -----------------S-DGFPTYH-----FA-----NVV-----DDHHMNISHVLRGVEWQISTTKHILIYKAF---- 297 (605)
Q Consensus 255 -----------------s-DG~PtY~-----fA-----~vV-----DD~~m~ITHVIRG~d~l~stpkqi~ly~al---- 297 (605)
+ |..-.|- ++ ... +| .-++-|+| |.|-+ +.|..++.|+
T Consensus 239 ~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfI-GKDii---~FHav~wPamL~~~ 313 (558)
T COG0143 239 LDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFI-GKDII---RFHAVYWPAMLMAA 313 (558)
T ss_pred CCCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEe-ccccC---cchhhHHHHHHHhC
Confidence 2 2111121 11 111 12 55678998 88855 7788777763
Q ss_pred CCCCCc--EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 298 GWTPPK--FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 298 G~~~P~--f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|.+.|. ++|- -+..+|+||||+.|. +...++.++ |.|+++|.||+.-. +. ..+..||++++++
T Consensus 314 ~~~lP~~i~ahg--~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~-p~------~~D~dFs~~~f~~ 379 (558)
T COG0143 314 GLPLPTRIFAHG--FLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLAREL-PE------GSDGDFSWEDFVE 379 (558)
T ss_pred CCCCCCEEEeee--eEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhC-CC------CCCCCCCHHHHHH
Confidence 677774 4553 356788899999998 799999988 99999999999876 22 5677899999999
No 47
>KOG2007|consensus
Probab=99.50 E-value=2e-13 Score=147.19 Aligned_cols=230 Identities=21% Similarity=0.255 Sum_probs=160.3
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHH------HcCCeEEEeccCCCCC---CCc---------------HHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAK------SHNGSFILRIEDTDQT---RFV---------------PEAVE 122 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar------~~~G~fiLRiEDTD~~---R~~---------------~~~~~ 122 (605)
.+|+.| ||++..-||||||+++--.++-| .++-.|+..|.|+|.+ |.. .-+++
T Consensus 54 ~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~ 133 (586)
T KOG2007|consen 54 NKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEE 133 (586)
T ss_pred CeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHH
Confidence 458999 68889999999999986555444 3678999999999975 332 13668
Q ss_pred HHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHH-HHHHHHHHHHhCCCCC-CCCCcC
Q psy16872 123 KLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDS-RLNLIRKDAVKSGLVP-KYDNKC 200 (605)
Q Consensus 123 ~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e-~l~~~r~~~~~~~~~~-~Y~~~c 200 (605)
...+||..|.+-+.... .+-||+++..-.+++++|++|.||.-..|-- .+ ...+ .| |.|
T Consensus 134 eF~~DM~~LnvLpPtv~--------tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv----------~kf~~~Y-gKL 194 (586)
T KOG2007|consen 134 EFLQDMAALNVLPPTVQ--------TRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDV----------DKFPHSY-GKL 194 (586)
T ss_pred HHHHHHHHhCCCCCccc--------chhhhchHHHHHHHHHHHhCCceeeeCCcEEEec----------ccccchh-hhh
Confidence 89999999998664331 3789999999999999999999997422200 00 0111 23 222
Q ss_pred cCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh-
Q psy16872 201 RNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV- 266 (605)
Q Consensus 201 r~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v- 266 (605)
. .+. +.+.+|+. .....-+....||.|||+ .|.|.||..|.
T Consensus 195 ---~-G~~-~~~~~gEg--------------------~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSa 249 (586)
T KOG2007|consen 195 ---V-GQR-KNLQEGEG--------------------VLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSA 249 (586)
T ss_pred ---c-Cch-hhcccCcC--------------------ccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHH
Confidence 2 110 12222321 000011345679999984 59999999886
Q ss_pred ---------hhhhcCCcceEEcCCCCcccHHHHHHH-HHHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCC
Q psy16872 267 ---------VDDHHMNISHVLRGVEWQISTTKHILI-YKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEF 335 (605)
Q Consensus 267 ---------VDD~~m~ITHVIRG~d~l~stpkqi~l-y~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~ 335 (605)
+|-|-.||...+ -|+.|.-.|..- |+.=-| .-.|.|.+- +..+|.||||+-++ +||++..+. |
T Consensus 250 Mas~~lG~~lDIH~GG~DL~F---PHHeNEiAQ~eA~~~~~~w-VnYflHtGh-L~i~g~KMSKSLkNFiTIke~Lk~-~ 323 (586)
T KOG2007|consen 250 MASAILGSQLDIHGGGIDLAF---PHHENEIAQSEAAFDDSQW-VNYFLHTGH-LTINGEKMSKSLKNFITIKEALKK-Y 323 (586)
T ss_pred HHHHhhccccceecCcccccC---CCcccHHHHHHHHhcCCcc-ceeEEEcCe-eeeccchhhhhhccceeHHHHHHh-c
Confidence 478889999887 588887777532 221112 125788876 67889999999776 799999998 9
Q ss_pred CHHHHHHHHHHhcC
Q psy16872 336 LPNALINFVTNFGG 349 (605)
Q Consensus 336 ~PeAl~nfla~lG~ 349 (605)
+|.++|-|+.+.-|
T Consensus 324 sp~qLRl~fl~~~w 337 (586)
T KOG2007|consen 324 SPRQLRLAFLLHQW 337 (586)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987764
No 48
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.44 E-value=2.5e-12 Score=135.90 Aligned_cols=246 Identities=19% Similarity=0.280 Sum_probs=141.3
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~ 134 (605)
+-.|+|||.+||||+|+.+...++||.. .| .|+.-+||.+.+ .....+.+.|.++++.|||+
T Consensus 6 ~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~ 85 (319)
T cd00814 6 TALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNIS 85 (319)
T ss_pred eCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCc
Confidence 3347999999999999999999999853 45 455566666432 24568889999999999999
Q ss_pred CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHH---------------HHHHHHHHH---hCC
Q psy16872 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSR---------------LNLIRKDAV---KSG 191 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~---------------l~~~r~~~~---~~~ 191 (605)
+|..+.. .++.+.+.-+++.++|.++|.+|. .+|..++ |...+.... ..+
T Consensus 86 ~D~~~~t-------t~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~ 158 (319)
T cd00814 86 FDYFIRT-------TSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKN 158 (319)
T ss_pred CCCCeeC-------CCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhC
Confidence 9964321 233466778899999999999995 2332221 233222111 111
Q ss_pred CCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-CCcccchhhhh----
Q psy16872 192 LVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-DGFPTYHFANV---- 266 (605)
Q Consensus 192 ~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-DG~PtY~fA~v---- 266 (605)
.....+ .--..++.+.+.+|.+. +-+. +|.+..-|..+ . ..+.++.-+ |....|- ++.
T Consensus 159 ~~~~~p----~~~~~~~~~~l~~~l~d---~~is------R~~~~WGipvp--~-~~~~~~yvWfda~~~y~-~~~~~~~ 221 (319)
T cd00814 159 PDFIWP----ENARNEVLSWLKEGLKD---LSIT------RDLFDWGIPVP--L-DPGKVIYVWFDALIGYI-SATGYYN 221 (319)
T ss_pred CccCCC----HHHHHHHHHHHhCCCcc---cCCC------ccCcccCeeCC--C-CCCcEEEEehhhHHHHH-HHccccc
Confidence 100010 00011222333333210 0000 01100011111 0 123444333 3222221 110
Q ss_pred --------hhhhcCCcceEEcCCCCcccHHHHH----HHHHHcCCCCC-cEEEecceecCCCccccccCCC-CChHHHHH
Q psy16872 267 --------VDDHHMNISHVLRGVEWQISTTKHI----LIYKAFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRN 332 (605)
Q Consensus 267 --------VDD~~m~ITHVIRG~d~l~stpkqi----~ly~alG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~ 332 (605)
--+..-.+.|++ |.|.+. .|. .+..++|+++| .+.++..+ ..+|+||||+.|. +++.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~v~~~-G~D~~~---fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g~kmSkS~gn~i~~~~~l~ 296 (319)
T cd00814 222 EEWGNSWWWKDGWPELVHFI-GKDIIR---FHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEGKKMSKSRGNVVDPDDLLE 296 (319)
T ss_pred ccccchhhhhcCCCceEEEE-eechhh---hhHHHHHHHHHhCCCCCCcEeeeeeeE-EECCeeecccCCcccCHHHHHH
Confidence 012234467877 888874 232 34456788866 45555553 4459999999996 79999999
Q ss_pred cCCCHHHHHHHHHHhc
Q psy16872 333 SEFLPNALINFVTNFG 348 (605)
Q Consensus 333 ~G~~PeAl~nfla~lG 348 (605)
. |.|+++|.|++..+
T Consensus 297 ~-~~~d~~R~~l~~~~ 311 (319)
T cd00814 297 R-YGADALRYYLLRER 311 (319)
T ss_pred H-cCchHHHHHHHhcC
Confidence 8 89999999999887
No 49
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.42 E-value=1.8e-12 Score=149.75 Aligned_cols=269 Identities=19% Similarity=0.268 Sum_probs=157.4
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+++.+..+++||.+ .|.=++-+-.||. .-....+.+.+.+++++|||++|.
T Consensus 11 py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~~d~ 90 (673)
T PRK00133 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGISFDN 90 (673)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5999999999999999999999964 4655555555553 223567899999999999999996
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCC------CCC---cC-cC
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPK------YDN---KC-RN 202 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~------Y~~---~c-r~ 202 (605)
.+. ....++.+.-+++.++|.++|.+|. .||..++--.- +..-.|.-|. +-. .| +.
T Consensus 91 f~r-------tt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~--~~~v~g~cp~C~~~d~~g~~ce~cg~~ 161 (673)
T PRK00133 91 YGS-------THSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLP--DRFVKGTCPKCGAEDQYGDNCEVCGAT 161 (673)
T ss_pred Ccc-------CCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCcc--chheecccCCCCCcccCCchhhhcccc
Confidence 421 1233688899999999999999996 56655431100 0000111110 000 12 22
Q ss_pred CCHHHHHHHH--hcCCCceEE------EEcCCC----------c----------------cceeccc------c-ceeee
Q psy16872 203 LTQEQIDEKL--KENSKYCIR------FKLTNH----------T----------------ESWQDLV------Y-GDISY 241 (605)
Q Consensus 203 ls~~e~~~~~--~~g~~~~iR------~k~~~~----------~----------------~~~~D~v------~-G~i~~ 241 (605)
+.+.++.+.. ..|.+..+| |+++.- . ....|+- . |. .+
T Consensus 162 ~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gi-pv 240 (673)
T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGF-EI 240 (673)
T ss_pred CChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccce-EC
Confidence 3333322110 122222222 332210 0 0011211 1 21 11
Q ss_pred cCCCCCCCcEEEec-CCcccchhhhh----------hhhhc-----CCcceEEcCCCCcccHHHHHH----HHHHcCCCC
Q psy16872 242 NVFHNEGDPVIIKS-DGFPTYHFANV----------VDDHH-----MNISHVLRGVEWQISTTKHIL----IYKAFGWTP 301 (605)
Q Consensus 242 ~~~~~~~D~Vi~ks-DG~PtY~fA~v----------VDD~~-----m~ITHVIRG~d~l~stpkqi~----ly~alG~~~ 301 (605)
+ . ..+.|++-+ |..+.|-.+.. .+++- ..+.|+| |.|-+ ..|.. ++-+.|+++
T Consensus 241 P--~-~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~---~fH~i~wpa~l~a~g~~l 313 (673)
T PRK00133 241 P--G-APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFI-GKDII---YFHTLFWPAMLEGAGYRL 313 (673)
T ss_pred C--C-CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEE-eecch---hHHHHHHHHHHHhCCCCC
Confidence 1 1 134555443 44455532221 11111 2356877 87765 55643 334579988
Q ss_pred Cc-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCC-ccccCCHHHHHH
Q psy16872 302 PK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTS-KSQLFSMKDLVE 370 (605)
Q Consensus 302 P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~-~~e~~s~eeli~ 370 (605)
|. ..-+.+++. +|+|||||.|+ ++..++.+. |.++|+|.|++..+ . .. .+..|+.+++..
T Consensus 314 P~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~-ygaDalR~~ll~~~--~-----~~~~D~~Fs~~~~~~ 376 (673)
T PRK00133 314 PTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDH-LDPDYLRYYLAAKL--P-----ETIDDLDFNWEDFQQ 376 (673)
T ss_pred CCEEeeeccEEe-cCCcccccCCcccCHHHHHHH-cCchHHHHHHHhcC--C-----CCCCCCCCCHHHHHH
Confidence 84 333455555 99999999998 689999998 99999999998776 2 23 456899998765
No 50
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.41 E-value=4.2e-12 Score=142.80 Aligned_cols=93 Identities=23% Similarity=0.365 Sum_probs=71.2
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CCe---EEEeccCCCC-------------CCCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NGS---FILRIEDTDQ-------------TRFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~---fiLRiEDTD~-------------~R~~~~~~~~I~~~L~wlGl~ 134 (605)
+-.|+|||.+||||+|+.+....+||.. .|. |+.-+||.|. ......+.+.+.+++++|||+
T Consensus 5 ~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~ 84 (530)
T TIGR00398 5 TALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNIS 84 (530)
T ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3347999999999999999999999853 454 4445555443 223568889999999999999
Q ss_pred CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
+|..+. ...+.+.+..+++.++|.++|.+|.
T Consensus 85 ~D~~~~-------t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 85 FDRFIR-------TTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCcc-------CCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 986421 1234477888999999999999994
No 51
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.37 E-value=1.1e-11 Score=130.49 Aligned_cols=225 Identities=19% Similarity=0.259 Sum_probs=128.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCCCC--------------------------CCcHHHHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTDQT--------------------------RFVPEAVEKL 124 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD~~--------------------------R~~~~~~~~I 124 (605)
|+|||.+||||+++.+....++|.. .| .|+.-+||.+.+ ....++.+.|
T Consensus 9 P~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (312)
T cd00668 9 PYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEH 88 (312)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999988888888753 45 455555554421 1135778889
Q ss_pred HHHHHHcCCCCC--CCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCC----------HHHHHHHHHHHHhCCC
Q psy16872 125 EQDLKWIGVVPD--ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCS----------DSRLNLIRKDAVKSGL 192 (605)
Q Consensus 125 ~~~L~wlGl~~D--e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs----------~e~l~~~r~~~~~~~~ 192 (605)
.++|+.|||..| .... ....++.+..++..++|.++|++|.-.-. -.++...-.+..+.+.
T Consensus 89 ~~~l~~lgI~~Dw~~~~~-------T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~ 161 (312)
T cd00668 89 KEDFRRLGISYDWSDEYI-------TTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGK 161 (312)
T ss_pred HHHHHHhCccccCCCCeE-------CCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCC
Confidence 999999999766 4311 12335677889999999999999982111 0011110001111110
Q ss_pred CCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecC----Ccccchhhhhhh
Q psy16872 193 VPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSD----GFPTYHFANVVD 268 (605)
Q Consensus 193 ~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksD----G~PtY~fA~vVD 268 (605)
.++... ..+..+.+.++. |+.|-|.- |.|.+++-|=.|
T Consensus 162 --~~p~~~----~~~~~~~l~~~~--------------------------------d~~isR~~~WG~~~P~~~i~~Wfd 203 (312)
T cd00668 162 --IVPEHV----KNRMEAWLESLL--------------------------------DWAISRQRYWGTPLPEDVFDVWFD 203 (312)
T ss_pred --cCChHH----HHHHHHHHhCCC--------------------------------CeEEeccCCCCCcCCcccccchhh
Confidence 010000 001111111111 33333311 223444333110
Q ss_pred ---------hhc---------CCc-ceEEcCCCCcc-cHHHHHHHHHHcCCC-CC--cEEEecceecCCCccccccCCC-
Q psy16872 269 ---------DHH---------MNI-SHVLRGVEWQI-STTKHILIYKAFGWT-PP--KFAHLPLLLNLNGSKLSKRQGD- 324 (605)
Q Consensus 269 ---------D~~---------m~I-THVIRG~d~l~-stpkqi~ly~alG~~-~P--~f~H~plil~~dg~KLSKR~g~- 324 (605)
.+. ... -|++ |.|++. -....++...+++.. +| .+.| .+++..+|+|||||.|+
T Consensus 204 s~~~~~~~~~~~~~~~~~~~~~~~di~~~-G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~ 281 (312)
T cd00668 204 SGIGPLGSLGYPEEKEWFKDSYPADWHLI-GKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNV 281 (312)
T ss_pred ccHHHHHHcCCCccchhhhhcCCceEEEE-ecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCc
Confidence 000 012 3433 777762 222233444566654 45 2466 77777777999999998
Q ss_pred CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 325 MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 325 ~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
+++.++.+. |.|+|+|.|++..+
T Consensus 282 v~~~d~~~~-~~~da~R~~l~~~~ 304 (312)
T cd00668 282 IDPSDVVEK-YGADALRYYLTSLA 304 (312)
T ss_pred CCHHHHHHH-cCcHHHHHHHHhcC
Confidence 789999988 99999999998866
No 52
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.37 E-value=3.6e-12 Score=149.03 Aligned_cols=271 Identities=18% Similarity=0.250 Sum_probs=158.2
Q ss_pred cCCCCcCChhhHHH-HHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCC
Q psy16872 76 LTSTGLLHLGGLRT-ALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPD 136 (605)
Q Consensus 76 p~PtG~LHiG~~Rt-AL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~D 136 (605)
|||||.+||||+++ .|....+||.+ .|.=++-+-.||. .-....+.+.+.+.++||||+||
T Consensus 26 pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~D 105 (801)
T PLN02610 26 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFD 105 (801)
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Confidence 69999999999995 68789999975 5877777777773 12345666778889999999999
Q ss_pred CCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHH-HHHHHHhCCCCCC--------CCC---c
Q psy16872 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNL-IRKDAVKSGLVPK--------YDN---K 199 (605)
Q Consensus 137 e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~-~r~~~~~~~~~~~--------Y~~---~ 199 (605)
.... ....++.+.-+++..+|.++|..|. =||..++.-. .| .-.|.=|. |-. .
T Consensus 106 ~f~r-------T~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~---~v~G~CP~~~C~~~~a~Gd~Ce~ 175 (801)
T PLN02610 106 KFGR-------TSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADR---LVEGTCPTEGCNYDSARGDQCEK 175 (801)
T ss_pred cCcc-------CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchH---HhcCcCCccccCccccccchhhh
Confidence 6422 2223456677888889999999996 3454432211 11 01121111 100 1
Q ss_pred C-cCCCHHHHHHHH--hcCCCceEE------EEcCCCcc-----------------------------ceecc------c
Q psy16872 200 C-RNLTQEQIDEKL--KENSKYCIR------FKLTNHTE-----------------------------SWQDL------V 235 (605)
Q Consensus 200 c-r~ls~~e~~~~~--~~g~~~~iR------~k~~~~~~-----------------------------~~~D~------v 235 (605)
| +.+.+.|+.+.. ..|.+.++| |+++.-.. .+.|+ =
T Consensus 176 Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~ 255 (801)
T PLN02610 176 CGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLK 255 (801)
T ss_pred ccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecC
Confidence 3 223444332110 123333332 33321000 01111 0
Q ss_pred cceeeecCCCCCCCcEEEec-CCcccchhhhh------hhhh-----cCCcceEEcCCCCcccHHHHHHHHHH----cC-
Q psy16872 236 YGDISYNVFHNEGDPVIIKS-DGFPTYHFANV------VDDH-----HMNISHVLRGVEWQISTTKHILIYKA----FG- 298 (605)
Q Consensus 236 ~G~i~~~~~~~~~D~Vi~ks-DG~PtY~fA~v------VDD~-----~m~ITHVIRG~d~l~stpkqi~ly~a----lG- 298 (605)
.| |..+ .....+.|+.-+ |....| ++.. -+++ .-.+.|+| |.|-+ +.|..++-| +|
T Consensus 256 WG-ipvP-~~~~~~~v~YVWfDAl~~Y-is~~~~~~~~~~~~W~~~~~~~~~hfi-GKDi~---~fH~i~wPa~L~a~g~ 328 (801)
T PLN02610 256 WG-VPVP-LEKYKDKVFYVWFDAPIGY-VSITACYTPEWEKWWKNPENVELYQFM-GKDNV---PFHTVMFPSTLLGTGE 328 (801)
T ss_pred Cc-ccCC-CCCCCCcEEEEehhhHHHH-HHHHhhhhhHHHHhcCCcccceEEEEE-eeecc---hhHHHHHHHHHHhCCC
Confidence 01 1111 000124555544 333334 2221 1122 22347988 88754 778766654 46
Q ss_pred -CCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 299 -WTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 299 -~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|+.|.-.+.--.++.+|+||||+.|+ +...++.+.+|.++++|.||+..+ .. ..+..||++++++
T Consensus 329 ~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~-p~------~~D~dFs~~~f~~ 395 (801)
T PLN02610 329 NWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNR-PE------VSDTLFTWADLQA 395 (801)
T ss_pred CcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcC-CC------CCCCcCCHHHHHH
Confidence 55774322222367899999999998 689999988899999999999876 22 4667899999887
No 53
>PLN02224 methionine-tRNA ligase
Probab=99.35 E-value=1.8e-11 Score=139.43 Aligned_cols=266 Identities=17% Similarity=0.223 Sum_probs=150.5
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+|||||++.+....+||.. .| .|+--+||.+.+ ....++.+.+.+.+++|||+||.
T Consensus 78 pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D~ 157 (616)
T PLN02224 78 YYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAYDK 157 (616)
T ss_pred CCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 3999999999999999999999974 35 455555555421 22346667888999999999996
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCc-----------
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCR----------- 201 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr----------- 201 (605)
.+. ....++.+.-++...+|.++|..|. -||..++.-..-.+.. .+ + +...|.
T Consensus 158 f~r-------Tt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~-~~--~-~~~~~~~~~~~~~e~~~ 226 (616)
T PLN02224 158 FIR-------TTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL-EN--N-CCPVHQMPCVARKEDNY 226 (616)
T ss_pred Cee-------CCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc-CC--C-CCCCCCCcceEEecceE
Confidence 421 1122366777888899999999996 1343332100000000 10 1 100111
Q ss_pred --CCCH--HHHHHHHhcCCCceEE----E-------E--cCCCccceeccccceeeecCCCCCCCcEEEec-CCcccchh
Q psy16872 202 --NLTQ--EQIDEKLKENSKYCIR----F-------K--LTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-DGFPTYHF 263 (605)
Q Consensus 202 --~ls~--~e~~~~~~~g~~~~iR----~-------k--~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-DG~PtY~f 263 (605)
+|+. +.+.+.+.+... .++ . + +++-.++ +|.+..-|..+ ..++.||.-+ |....|--
T Consensus 227 ff~Ls~~~~~L~~~~~~~~~-~~~p~~~~~~~~~~l~~gL~d~~IS-R~~~~WGIpvP---~~~~~viYVWfDAl~~Yls 301 (616)
T PLN02224 227 FFALSKYQKPLEDILAQNPR-FVQPSYRLNEVQSWIKSGLRDFSIS-RALVDWGIPVP---DDDKQTIYVWFDALLGYIS 301 (616)
T ss_pred EEEhHHHHHHHHHHHHhCCC-ccCCHHHHHHHHHHHhcCCCCcccc-CCCCCCceECC---CCCCcEEEEehhhHHHHHH
Confidence 1111 112222222211 111 0 0 0000011 12111111111 1245677654 43344422
Q ss_pred hhhh--hh---------hcCCcceEEcCCCCcccHHHHHHHHH----HcCCCCCc-EEEecceecCCCccccccCCC-CC
Q psy16872 264 ANVV--DD---------HHMNISHVLRGVEWQISTTKHILIYK----AFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MS 326 (605)
Q Consensus 264 A~vV--DD---------~~m~ITHVIRG~d~l~stpkqi~ly~----alG~~~P~-f~H~plil~~dg~KLSKR~g~-~s 326 (605)
|.-- ++ +--..-|+| |.|.+. .|..++- ++|++.|. +..+.. ++.+|+||||+.|+ ++
T Consensus 302 ~~~~~~~~~~~~~~~~~~w~~~v~~i-GKDii~---fH~i~wpa~l~~~g~~~P~~i~~~g~-l~~eG~KMSKS~GN~i~ 376 (616)
T PLN02224 302 ALTEDNKQQNLETAVSFGWPASLHLI-GKDILR---FHAVYWPAMLMSAGLELPKMVFGHGF-LTKDGMKMGKSLGNTLE 376 (616)
T ss_pred HhcccccccccchhhccCCCcceEEE-eecccc---cHHHHHHHHHHHCCCCCCcEEEeccc-EecCCccccccCCccCC
Confidence 2110 00 112356887 888874 4655554 45888884 333455 67899999999997 78
Q ss_pred hHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 327 VEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 327 v~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.++.+. |.|+++|.||+..+ .+ ..+..||.+++++
T Consensus 377 p~e~l~~-ygaD~~R~yLl~~~-p~------~~d~~fs~~~~~~ 412 (616)
T PLN02224 377 PFELVQK-FGPDAVRYFFLREV-EF------GNDGDYSEDRFIK 412 (616)
T ss_pred HHHHHHH-cCcHHHHHHHHhcC-CC------cCCCCCCHHHHHH
Confidence 8999888 99999999998875 22 4556899998765
No 54
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.35 E-value=5.3e-12 Score=142.72 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=69.3
Q ss_pred ecCCCCcCChhhHHHH-HHHHHHHHHc--CC---eEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCCC
Q psy16872 75 FLTSTGLLHLGGLRTA-LYNYLFAKSH--NG---SFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVVP 135 (605)
Q Consensus 75 fp~PtG~LHiG~~RtA-L~n~l~Ar~~--~G---~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~~ 135 (605)
.|+|||.|||||+++. +...++||.. .| .|+--+||.+.+ -....+.+.+.++++.|||+|
T Consensus 11 ~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~ 90 (556)
T PRK12268 11 WPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISY 90 (556)
T ss_pred CCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3699999999999998 8888888853 45 444455555432 124678899999999999999
Q ss_pred CCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 136 DESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 136 De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
|..+ +.+ ++.+.-+++.++|.++|.+|.
T Consensus 91 d~~~---------~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 91 DLFT---------RTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred CCCc---------CCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 8653 334 778889999999999999996
No 55
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.33 E-value=2.5e-13 Score=147.38 Aligned_cols=276 Identities=22% Similarity=0.318 Sum_probs=146.4
Q ss_pred eeEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCC
Q psy16872 72 LKHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGV 133 (605)
Q Consensus 72 v~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl 133 (605)
++-.|+|||.|||||+.+.|....+||.+ .|.=++-+-.|| |+.....+.+.|.+.++.+||
T Consensus 4 Tt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I 83 (391)
T PF09334_consen 4 TTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNI 83 (391)
T ss_dssp EEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-
T ss_pred ecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 35557999999999999999999999965 465566555554 334466788899999999999
Q ss_pred CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCC------C---c
Q psy16872 134 VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYD------N---K 199 (605)
Q Consensus 134 ~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~------~---~ 199 (605)
++|.... ...+++.+.-+++.++|.++|..|. =||..++-- -.+..-.|.-|.+. . .
T Consensus 84 ~~D~F~r-------Tt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~f--l~e~~v~g~CP~C~~~~a~g~~Ce~ 154 (391)
T PF09334_consen 84 SYDRFIR-------TTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERF--LPESFVEGTCPYCGSDKARGDQCEN 154 (391)
T ss_dssp --SEEEE-------TTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEE--E-GGGETCEETTT--SSCTTTEETT
T ss_pred CCcceeC-------CCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcc--cccceeeccccCcCccccCCCcccC
Confidence 9997532 1223566677889999999999995 233332110 00111122222111 1 1
Q ss_pred Cc-CCCHHHHHHH--HhcCCCceEE------EEcCCCccceeccccce-----------eeecCCCCCCC----------
Q psy16872 200 CR-NLTQEQIDEK--LKENSKYCIR------FKLTNHTESWQDLVYGD-----------ISYNVFHNEGD---------- 249 (605)
Q Consensus 200 cr-~ls~~e~~~~--~~~g~~~~iR------~k~~~~~~~~~D~v~G~-----------i~~~~~~~~~D---------- 249 (605)
|. .+.++|+.+. ...|.+..+| |+++.-...+.+.+... +.--.+....|
T Consensus 155 cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WG 234 (391)
T PF09334_consen 155 CGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWG 234 (391)
T ss_dssp TSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSS
T ss_pred CCCCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCc
Confidence 21 1221111000 0123333444 44432100111111000 00000111223
Q ss_pred --------cEEEec-CCcccchhhh---------------hh-hhhcCCcceEEcCCCCcccHHHHHHHHH----HcCCC
Q psy16872 250 --------PVIIKS-DGFPTYHFAN---------------VV-DDHHMNISHVLRGVEWQISTTKHILIYK----AFGWT 300 (605)
Q Consensus 250 --------~Vi~ks-DG~PtY~fA~---------------vV-DD~~m~ITHVIRG~d~l~stpkqi~ly~----alG~~ 300 (605)
.||.-+ |..+.|-.+. .- +|-...+.|+| |.|. ++-|..++. |+|++
T Consensus 235 I~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi---~~fH~i~~pa~l~a~~~~ 310 (391)
T PF09334_consen 235 IPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDI---IRFHAIYWPAMLLAAGLP 310 (391)
T ss_dssp EEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGG---HHHHHTHHHHHHHHCTB-
T ss_pred ceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccch---hHHHHHHhHHHHhcccCC
Confidence 333322 2222221111 11 34446788998 8875 577875554 46888
Q ss_pred CCc--EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 301 PPK--FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 301 ~P~--f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.|. +.|-= +..+|+||||+.|. +++.++.+. |.++++|.||+..+ . ...+..||.+++++
T Consensus 311 lP~~i~~~~~--~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~--~-----~~~d~~F~~~~~~~ 373 (391)
T PF09334_consen 311 LPRRIVVHGF--LTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREG--P-----EGQDSDFSWEDFIE 373 (391)
T ss_dssp --SEEEEE----EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHS--S-----TTS-EEE-HHHHHH
T ss_pred CCCEEEeeee--EEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhc--C-----CCCCCCCCHHHHHH
Confidence 885 34432 44589999999986 799999999 99999999999987 3 24567899999988
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.32 E-value=1.7e-11 Score=122.69 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=49.9
Q ss_pred hhhcCCcceEEcCCCCcccHHHHHHHHHH-cCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHH
Q psy16872 268 DDHHMNISHVLRGVEWQISTTKHILIYKA-FGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFV 344 (605)
Q Consensus 268 DD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfl 344 (605)
|-|..|+.|+. =|+.|...| ..| .|-+.+ .+.|.. +++.+|+|||||.|+ +++.++.+. |.|+|+|.|+
T Consensus 130 dih~~G~Dl~f---pH~~~~~a~---~~a~~g~~~~~~~~h~~-~v~~~g~KMSKs~Gn~v~~~dll~~-~~~da~R~~~ 201 (213)
T cd00672 130 DIHGGGVDLIF---PHHENEIAQ---SEAATGKPFARYWLHTG-HLTIDGEKMSKSLGNFITVRDALKK-YDPEVLRLAL 201 (213)
T ss_pred cEEeecCCCCc---ChHHHHHHH---HHHHhCCCCCcEEEEEE-EEeccCcchhhcCCCccCHHHHHHH-cCHHHHHHHH
Confidence 44555555544 244443333 334 354334 477874 478999999999998 689999986 9999999999
Q ss_pred HHhc
Q psy16872 345 TNFG 348 (605)
Q Consensus 345 a~lG 348 (605)
+...
T Consensus 202 l~~~ 205 (213)
T cd00672 202 LSSH 205 (213)
T ss_pred HhCC
Confidence 7654
No 57
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.30 E-value=1.1e-11 Score=140.49 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=64.2
Q ss_pred CCcEEEecCCcccch---hhhhhhhhcC-CcceEE--cCCCCcccHHHHHHHHHHcCCCCC-cEEEecc-eecCCCcccc
Q psy16872 248 GDPVIIKSDGFPTYH---FANVVDDHHM-NISHVL--RGVEWQISTTKHILIYKAFGWTPP-KFAHLPL-LLNLNGSKLS 319 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~---fA~vVDD~~m-~ITHVI--RG~d~l~stpkqi~ly~alG~~~P-~f~H~pl-il~~dg~KLS 319 (605)
.|.||+||||.+||. +|...+=+.. +.+++| -|.||..--++-..+.++|||..+ .+-|+.. +++.+|+|||
T Consensus 294 ~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmS 373 (562)
T PRK12451 294 PPCLIRKSDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMS 373 (562)
T ss_pred CceEEEeCCCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCc
Confidence 489999999999995 4444443433 566665 699998766666677889999754 5778774 3456888999
Q ss_pred ccCCC-CChHHHHHc
Q psy16872 320 KRQGD-MSVEAIRNS 333 (605)
Q Consensus 320 KR~g~-~sv~~~r~~ 333 (605)
||.|. ++++++.+.
T Consensus 374 tR~G~~v~l~dLlde 388 (562)
T PRK12451 374 TRKGRVVLLEEVLEE 388 (562)
T ss_pred CCCCCeeEHHHHHHH
Confidence 99996 688888875
No 58
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.30 E-value=1.3e-11 Score=140.08 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=79.3
Q ss_pred CCcEEEecCCcccchh---hhhhhhhcCCcceEE--cCCCCcccHHHHHHHHHHcCCCCC-cEEEecceecCCCcccccc
Q psy16872 248 GDPVIIKSDGFPTYHF---ANVVDDHHMNISHVL--RGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLSKR 321 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~f---A~vVDD~~m~ITHVI--RG~d~l~stpkqi~ly~alG~~~P-~f~H~plil~~dg~KLSKR 321 (605)
.|.||+||||.+||-- |...+=...+.+++| -|.||..--++-..+.++||++.| .+.|++.-+- +|.|||||
T Consensus 298 ~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~~kmSkr 376 (566)
T TIGR00456 298 KDRVLQKSDGTYLYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV-PLGSMKTR 376 (566)
T ss_pred CCeEEEECCCCceechhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE-ECCCCCcc
Confidence 4899999999999942 222222223566765 799999877776788889999877 6888775332 35799999
Q ss_pred CCC-CChHHHHHc----------------------CCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 322 QGD-MSVEAIRNS----------------------EFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 322 ~g~-~sv~~~r~~----------------------G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.|. +++.++.++ -+..+|++.|+...+ . .++-.|+++.+.+
T Consensus 377 ~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~--~------~~d~~Fd~d~~~~ 440 (566)
T TIGR00456 377 RGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN--R------ETHYVFDWDAMLS 440 (566)
T ss_pred CCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC--C------CCCceecHHHHhc
Confidence 997 455532222 133478888887765 2 4667899987766
No 59
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.30 E-value=2.8e-11 Score=139.38 Aligned_cols=264 Identities=20% Similarity=0.304 Sum_probs=145.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+++.+....+||.. .| .|+--.||.+.+ .....+.+.|.++|++|||++|.
T Consensus 13 py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~ 92 (648)
T PRK12267 13 YYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK 92 (648)
T ss_pred CCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5999999999999999999999853 35 444455544432 24568889999999999999997
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCCcCcCC---------
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDNKCRNL--------- 203 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~l--------- 203 (605)
.+.. ....+.+.-+++.++|.++|++|.- ||..++.-. -......+ +.+ -.|..-
T Consensus 93 f~rT-------t~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l-~~~~l~~~--~~c-~~cg~~~e~~~~~~~ 161 (648)
T PRK12267 93 FIRT-------TDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFF-TESQLVDG--GKC-PDCGREVELVKEESY 161 (648)
T ss_pred CeeC-------CCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccC-ChHHhccC--CcC-CCCCCcCeEEecceE
Confidence 5321 1223566778999999999999962 443332110 00000010 111 112110
Q ss_pred --CHHHHHHH----HhcCCC----ceEE--EE-------cCCCccceeccc-cceeeecCCCCCCCcEEEec-CCcccch
Q psy16872 204 --TQEQIDEK----LKENSK----YCIR--FK-------LTNHTESWQDLV-YGDISYNVFHNEGDPVIIKS-DGFPTYH 262 (605)
Q Consensus 204 --s~~e~~~~----~~~g~~----~~iR--~k-------~~~~~~~~~D~v-~G~i~~~~~~~~~D~Vi~ks-DG~PtY~ 262 (605)
.....+++ ..++.. ...+ +. +++-.++ +|.+ .|. ..+ . ..+.|+.-+ |--..|
T Consensus 162 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~IS-R~~~~WGi-pvP--~-~~~~v~yVWfDA~~~y- 235 (648)
T PRK12267 162 FFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSIS-RTSFDWGI-PVP--F-DPKHVVYVWIDALLNY- 235 (648)
T ss_pred EEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccC-CCCCCcce-ECC--C-CCCCEEEEcccchHHH-
Confidence 00111111 111110 0000 00 0000000 1101 121 111 1 134566543 222222
Q ss_pred hhhh---------hhhhcCCcceEEcCCCCcccHHHHHHHH----HHcCCCCCc--EEEecceecCCCccccccCCC-CC
Q psy16872 263 FANV---------VDDHHMNISHVLRGVEWQISTTKHILIY----KAFGWTPPK--FAHLPLLLNLNGSKLSKRQGD-MS 326 (605)
Q Consensus 263 fA~v---------VDD~~m~ITHVIRG~d~l~stpkqi~ly----~alG~~~P~--f~H~plil~~dg~KLSKR~g~-~s 326 (605)
++.. ..++--...|++ |.|.+. .|..+| .++|+++|. ++| .. +..+|+||||+.|+ ++
T Consensus 236 ~s~~~~~~~~~~~~~~~wp~~~~~~-GkDii~---fH~i~wpa~l~~~~~~~p~~v~~h-g~-l~~eg~KMSKS~GN~i~ 309 (648)
T PRK12267 236 ITALGYGSDDDELFKKFWPADVHLV-GKDILR---FHAIYWPIMLMALGLPLPKKVFAH-GW-WLMKDGKMSKSKGNVVD 309 (648)
T ss_pred HHHcCCCCCCchHHHhhcccceEEE-eeeecc---hhHHHHHHHHHhCCCCCCcEEEec-ce-EEECCceecccCCcccC
Confidence 1111 001111234655 787764 566554 456888885 333 33 34578999999997 68
Q ss_pred hHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 327 VEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 327 v~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
..++.+. |.|+++|.||+..+ .. ..+..||.+++.+
T Consensus 310 p~d~l~~-ygaD~lR~~L~~~~-~~------~~D~~fs~~~~~~ 345 (648)
T PRK12267 310 PEELVDR-YGLDALRYYLLREV-PF------GSDGDFSPEALVE 345 (648)
T ss_pred HHHHHHH-cCCcHHHHHHHhcC-CC------CCCCCCCHHHHHH
Confidence 8898887 99999999998765 22 3456799998865
No 60
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.8e-11 Score=134.06 Aligned_cols=181 Identities=22% Similarity=0.271 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCC
Q psy16872 117 VPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196 (605)
Q Consensus 117 ~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y 196 (605)
+....+.|.++|+.||+++|..... ..|-+-....+.++.|.++|.+|.-
T Consensus 238 v~~~l~~~k~~l~~l~V~fD~~~~E-------~e~~~~~~~~~vv~~L~~~~~~~e~----------------------- 287 (577)
T COG0018 238 VDLSLEGIKETLDRLGVKFDVYDSE-------GESFYNGKVEKVVEDLEEKGLLYED----------------------- 287 (577)
T ss_pred HHHHHHHHHHHHHHhCcccceeecc-------chhhhcccHHHHHHHHHhcCCEeee-----------------------
Confidence 3445677888889999998874211 1222223466788888888888850
Q ss_pred CC-cCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccch---hhhhhhhhcC
Q psy16872 197 DN-KCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH---FANVVDDHHM 272 (605)
Q Consensus 197 ~~-~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~---fA~vVDD~~m 272 (605)
+| .|-.++. ++ + .....|.||+||||.++|- +|...+=+..
T Consensus 288 ~GA~~vdl~~----------------~~-~------------------~gd~~~~vl~KSDGt~lY~t~DIAy~~~K~~~ 332 (577)
T COG0018 288 DGALVVDLLK----------------FK-K------------------FGDDKDRVLQKSDGTYLYFTRDIAYHLYKFER 332 (577)
T ss_pred CCeEEEehhh----------------hh-h------------------cCCCCCeEEEEcCCCeeeehhHHHHHHHHHhc
Confidence 11 1111110 00 0 1224699999999999994 6666665555
Q ss_pred CcceEE--cCCCCcccHHHHHHHHHHcCCCCCc--EEEec--ceecCCCccccccCCC-CChHHHHHcCCC---------
Q psy16872 273 NISHVL--RGVEWQISTTKHILIYKAFGWTPPK--FAHLP--LLLNLNGSKLSKRQGD-MSVEAIRNSEFL--------- 336 (605)
Q Consensus 273 ~ITHVI--RG~d~l~stpkqi~ly~alG~~~P~--f~H~p--lil~~dg~KLSKR~g~-~sv~~~r~~G~~--------- 336 (605)
+-+.+| -|.||...-++-....+++|+.++. ..|.+ |+.+.+|.|||||.|. ++++++.++ ..
T Consensus 333 ~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde-~~era~~~~~~ 411 (577)
T COG0018 333 GFDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDE-AGERAPEEMEE 411 (577)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHH-HHHHhhhHhhh
Confidence 666664 6999987544444666788998774 77865 5667789999999997 688887766 22
Q ss_pred -------------HHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHH
Q psy16872 337 -------------PNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371 (605)
Q Consensus 337 -------------PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~ 371 (605)
-.|++.++.... .++.-+|+++++.+-
T Consensus 412 ~~~~~~~iA~~vgi~Avry~~l~~~--------~~~~~~Fd~d~~lsf 451 (577)
T COG0018 412 KEEKNEEIAEVVGIDAVRYADLSRS--------RDKDYVFDWDKALSF 451 (577)
T ss_pred hhhhhHHHHHHhhhhhHHHHHHhcC--------CCCCcEeeHHHHHhc
Confidence 568888887754 367889999999993
No 61
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.22 E-value=7.7e-11 Score=124.42 Aligned_cols=94 Identities=23% Similarity=0.357 Sum_probs=68.3
Q ss_pred ecCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCC-------------CcHHHHHHHHHHHHHcCCCCC
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTR-------------FVPEAVEKLEQDLKWIGVVPD 136 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L~wlGl~~D 136 (605)
.|+|||.+||||+|+.+...++||.. ...|+.-+||.+.+- ..+.+.+.+.++|+.||+..|
T Consensus 8 ~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 8 FPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 36999999999999999998888863 346677778876432 257888999999999999877
Q ss_pred CCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee-----eCC
Q psy16872 137 ESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK-----CFC 175 (605)
Q Consensus 137 e~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-----Cfc 175 (605)
-.+ ++..+ ++.+.-+....+|.++|.+|. +||
T Consensus 88 ~~~-------~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (314)
T cd00812 88 WRR-------EFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC 126 (314)
T ss_pred ccc-------ccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee
Confidence 422 11221 222333444559999999996 677
No 62
>PLN02286 arginine-tRNA ligase
Probab=99.20 E-value=3.6e-10 Score=128.46 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=82.5
Q ss_pred CCcEEEecCCcccch---hhhhhhhhcC-CcceEE--cCCCCcccHHHHHHHHHHcCCCCC----cEEEec--ceecCCC
Q psy16872 248 GDPVIIKSDGFPTYH---FANVVDDHHM-NISHVL--RGVEWQISTTKHILIYKAFGWTPP----KFAHLP--LLLNLNG 315 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~---fA~vVDD~~m-~ITHVI--RG~d~l~stpkqi~ly~alG~~~P----~f~H~p--lil~~dg 315 (605)
.|.||+||||.+||. +|...+-+.. +.+++| -|.||..--++-..+.++|||..+ ..-|+. |++..+|
T Consensus 297 ~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g 376 (576)
T PLN02286 297 IPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG 376 (576)
T ss_pred CceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC
Confidence 378999999999995 4444444433 455554 599998755555677788998633 577866 5666899
Q ss_pred ccccccCCC-CChHHHHHcC----------------------------CCHHHHHHHHHHhcCCCCCCCCCCccccCCHH
Q psy16872 316 SKLSKRQGD-MSVEAIRNSE----------------------------FLPNALINFVTNFGGGFHDHQRTSKSQLFSMK 366 (605)
Q Consensus 316 ~KLSKR~g~-~sv~~~r~~G----------------------------~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~e 366 (605)
+|||||.|. ++++++.++. +--.|++.+..... ..+.-.|+++
T Consensus 377 ~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~--------~~~~~~Fd~d 448 (576)
T PLN02286 377 KRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNN--------RLTNYTFSFD 448 (576)
T ss_pred CcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcC--------CCCCCccCHH
Confidence 999999997 6888887741 11367777775543 3567889999
Q ss_pred HHHHH
Q psy16872 367 DLVEK 371 (605)
Q Consensus 367 eli~~ 371 (605)
.+.+-
T Consensus 449 ~~l~~ 453 (576)
T PLN02286 449 QMLDL 453 (576)
T ss_pred HHHhh
Confidence 98883
No 63
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.19 E-value=8.9e-10 Score=117.96 Aligned_cols=234 Identities=18% Similarity=0.233 Sum_probs=136.4
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCCC------------------------------cHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTRF------------------------------VPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R~------------------------------~~~~ 120 (605)
.+|||.+||||+|+.+..+.+||.. .-.|+.-.||-|+-|. .+.+
T Consensus 27 i~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~~~~d~~ 106 (353)
T cd00674 27 ISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCESYAEHF 106 (353)
T ss_pred CCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCHHHHHHH
Confidence 4899999999999999988888863 4588889999987554 3466
Q ss_pred HHHHHHHHHHcCCCCCCCccCCCccCcccccccH--HHHHHHHHH-HHHCCCEeeeCCCHHHHHHHHHHHHhCCCCC--C
Q psy16872 121 VEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRL--ALYQKEVQT-LLHNGSAYKCFCSDSRLNLIRKDAVKSGLVP--K 195 (605)
Q Consensus 121 ~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~--~~Y~~~a~~-Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~--~ 195 (605)
.+.+.+.|+.|||++|- |++++-. ..|.+.+.. |.+.+... +-|...+....+.+=.| -
T Consensus 107 ~~~f~~~l~~lgi~~d~----------~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p 170 (353)
T cd00674 107 ERPFEESLEKLGIEVEF----------ISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMP 170 (353)
T ss_pred HHHHHHHHHHcCCeeee----------eecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeee
Confidence 77788888889998873 3333322 245444443 33333321 22222221111000011 1
Q ss_pred CCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee-eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCc
Q psy16872 196 YDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI-SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNI 274 (605)
Q Consensus 196 Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i-~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~I 274 (605)
+...|..++ ..++-+....+.+.+.+. .|.. ..+ +.+..|--.|-.-=+..=...||
T Consensus 171 ~c~~cg~~~------------~~v~~~d~~~~~v~y~c~-cG~~g~~~---------~~~g~~KL~Wr~dW~~rW~~l~V 228 (353)
T cd00674 171 YCEKCGKDT------------TTVEAYDAKAGTVTYKCE-CGHEETVD---------IRTGRGKLTWRVDWPMRWAILGV 228 (353)
T ss_pred ecCCcCcce------------eEEEEEeCCCCeEEEEcC-CCCEEEEe---------ecCCCcccCCCCCchhhhhhcCC
Confidence 112343222 112222222223333331 1211 000 11111221111100111123567
Q ss_pred ceEEcCCCCccc---HHHHHHHHH-HcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 275 SHVLRGVEWQIS---TTKHILIYK-AFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 275 THVIRG~d~l~s---tpkqi~ly~-alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
+-=+=|.||..+ -+.-..+.+ +||+++|......+++..+|.|||||+|+ +++.++.+. +.|++++.|++...
T Consensus 229 d~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR~~~l~~~ 306 (353)
T cd00674 229 DFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRYLYARRK 306 (353)
T ss_pred CEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHHHHHHhCC
Confidence 766779999877 666677777 99999996666677777777799999998 799999998 99999999987754
No 64
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=99.15 E-value=2.2e-10 Score=119.25 Aligned_cols=192 Identities=18% Similarity=0.222 Sum_probs=139.2
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||+-.|+.+|...+..|.+.++.|.|. +..+...+....+..++.++|++|+... .|+
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~-------i~~ 79 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKST-------IFF 79 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCE-------EEE
Confidence 79999999999999999999999999999999998 5567778888999999999999997653 478
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+..+.|.- +- .+.|.|+-.+++.. ..|.. +.+.+.
T Consensus 80 qS~~~~~~~l-~~-------~l~~~~~~~~l~r~----------~~fk~------------~~~~~~------------- 116 (280)
T cd00806 80 QSDVPEHYEL-AW-------LLSCVVTFGELERM----------TGFKD------------KSAQGE------------- 116 (280)
T ss_pred cCCcHHHHHH-HH-------HHhCcCCHHHHHhc----------cchhh------------hhccCC-------------
Confidence 9999865433 21 24599998777321 11210 000000
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPK 303 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~ 303 (605)
+ . +=|..+|-.--+.|-.+.+.++|..|.|...+-..-.-+.+.+| +..|.
T Consensus 117 --------------~----~-----~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~ 173 (280)
T cd00806 117 --------------S----V-----NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPA 173 (280)
T ss_pred --------------C----C-----cchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCe
Confidence 0 0 01333444444444445566999999999877666677788888 78899
Q ss_pred EEEe--cceecCCCc--cccccCC--CCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 304 FAHL--PLLLNLNGS--KLSKRQG--DMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 304 f~H~--plil~~dg~--KLSKR~g--~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
..|. |+|.+.+|. ||||+.+ .+.+.+ .|+.+..-+...
T Consensus 174 ~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d------~~~~i~~KI~~a 217 (280)
T cd00806 174 ALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD------SPKEIKKKIMKA 217 (280)
T ss_pred eeccCCCccccCCCCCCcccCCCCCCeEEeeC------CHHHHHHHHHhc
Confidence 9888 999998874 9999987 345542 788888888665
No 65
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.13 E-value=4.2e-10 Score=121.96 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=67.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------C----------------------CcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------R----------------------FVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------R----------------------~~~~~~ 121 (605)
|+|||.|||||+++.+....+||.+ .|.-++.+-.+|.- + .+..+.
T Consensus 10 Py~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (382)
T cd00817 10 PNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESG 89 (382)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 57777766666651 0 134577
Q ss_pred HHHHHHHHHcCCCCC--CCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPD--ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~D--e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.+.++++.||+..| .... ....++.+.-+....+|.++|++|.
T Consensus 90 ~~~~~~~~~lgi~~Dw~~~~~-------T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 90 GKIREQLKRLGASVDWSREYF-------TMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHhCceeecCCCcC-------CCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 889999999998544 5321 1233445566777789999999997
No 66
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.13 E-value=1.1e-09 Score=116.89 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=68.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccC----CCCC--------------------------CCcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIED----TDQT--------------------------RFVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiED----TD~~--------------------------R~~~~~ 120 (605)
|+|||.+||||+|+.++...++|.+ .| .|+--+|| |+.+ .....+
T Consensus 10 P~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T cd00818 10 PYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALRY 89 (338)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHHH
Confidence 6999999999999999999988854 34 44445555 3210 123467
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
.+.+.++|+.||+ +||.... ....++.+.-++...+|.++|++|.
T Consensus 90 ~~~~~~~~~~lgi~~~~~~~~~-------T~~~~~~~~v~~~f~~L~~~G~iY~ 136 (338)
T cd00818 90 VDEQEEQFQRLGVWVDWENPYK-------TMDPEYMESVWWVFKQLHEKGLLYR 136 (338)
T ss_pred HHHHHHHHHHhCceecCCCCeE-------CCCHHHHHHHHHHHHHHHHCCCEec
Confidence 7899999999999 8886421 1345788888999999999999996
No 67
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.93 E-value=8.2e-09 Score=110.91 Aligned_cols=86 Identities=24% Similarity=0.429 Sum_probs=56.5
Q ss_pred CCcEEEecCCcccchh---hhhhhhh-cCCcceEE--cCCCCcccHHHHHHHHHHcCCC--CCcEEEec--ceecCCCc-
Q psy16872 248 GDPVIIKSDGFPTYHF---ANVVDDH-HMNISHVL--RGVEWQISTTKHILIYKAFGWT--PPKFAHLP--LLLNLNGS- 316 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~f---A~vVDD~-~m~ITHVI--RG~d~l~stpkqi~ly~alG~~--~P~f~H~p--lil~~dg~- 316 (605)
.|.||+||||.+||.. |...+=+ ..+.+-+| -|.||..--.+-..+.++||+. .....|++ +++.++|+
T Consensus 208 k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~ 287 (354)
T PF00750_consen 208 KDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKV 287 (354)
T ss_dssp S-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEE
T ss_pred CcceEEcCCCceEEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCc
Confidence 4789999999999963 3333322 23344443 5888875433334677889984 34677865 66789998
Q ss_pred cccccCCC-CChHHHHHc
Q psy16872 317 KLSKRQGD-MSVEAIRNS 333 (605)
Q Consensus 317 KLSKR~g~-~sv~~~r~~ 333 (605)
|||||+|. ++++++.++
T Consensus 288 ~mstR~G~~i~l~dllde 305 (354)
T PF00750_consen 288 KMSTRKGNVITLDDLLDE 305 (354)
T ss_dssp SS-TTTTSSTBHHHHHHH
T ss_pred cccCCCCCceEHHHHHHH
Confidence 99999997 689998886
No 68
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.84 E-value=1.1e-07 Score=112.21 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=66.3
Q ss_pred ecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC-----------------CC------------CCcHHHHHH
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD-----------------QT------------RFVPEAVEK 123 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD-----------------~~------------R~~~~~~~~ 123 (605)
+|+|||.|||||+++.+....+||-+ .|.-++.+-.+| +. ..+.++.+.
T Consensus 46 pPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~ 125 (800)
T PRK13208 46 PPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKK 125 (800)
T ss_pred cCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999964 687777655444 22 134568899
Q ss_pred HHHHHHHcCCCCC--CCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 124 LEQDLKWIGVVPD--ESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 124 I~~~L~wlGl~~D--e~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
|.++++.||+..| .. |+.+ ++.+.-+....+|.++|.+|+
T Consensus 126 ~~~~~~~lg~s~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 126 FRELWRRLGLSVDWSLE---------YQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHhCeeeccCCC---------cccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 9999999998544 42 2222 344455667778999999997
No 69
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.80 E-value=3e-07 Score=109.53 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=67.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC------------------C--------------CcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT------------------R--------------FVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~------------------R--------------~~~~~~ 121 (605)
|++||.|||||+++.+.-..+||-+ .|.-++.+-.+|.. + .+.++.
T Consensus 42 Py~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~ 121 (861)
T TIGR00422 42 PNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESG 121 (861)
T ss_pred CCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 68888888777731 1 145678
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.|.+.++.||+..|-. .+|+.. ++.+.-+....+|.++|..|+
T Consensus 122 ~~~~~~~~~lG~s~Dw~-------r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 122 GTIKNQIKRLGASLDWS-------RERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHhCeeeecC-------CCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 89999999999655432 123333 334455667778999999997
No 70
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.72 E-value=3.5e-07 Score=109.09 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=67.1
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC------------------CC--------------cHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT------------------RF--------------VPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~------------------R~--------------~~~~~ 121 (605)
|++||.|||||+++.+.-..+||-+ .|.-+|.+-.||.. +. +.++.
T Consensus 45 P~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~ 124 (874)
T PRK05729 45 PNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESG 124 (874)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999965 68888877777742 10 45678
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.|.+.++.||+..|-.- +|+.. ++...-+....+|.++|..|+
T Consensus 125 ~~~~~~~~~lG~s~Dw~r-------~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 125 GTITNQLRRLGASCDWSR-------ERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHhCcceecCC-------CcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 999999999996544210 23333 333445667778999999997
No 71
>KOG0436|consensus
Probab=98.59 E-value=4.9e-07 Score=96.72 Aligned_cols=261 Identities=21% Similarity=0.298 Sum_probs=149.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC------------CCCcHHHHHHHHHHHHH----cCCCCCCC
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ------------TRFVPEAVEKLEQDLKW----IGVVPDES 138 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~------------~R~~~~~~~~I~~~L~w----lGl~~De~ 138 (605)
+||-..||||+.++|....+||.. .|.-+.=+..||. .|+.++..+.|-+.+.. +||.++..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 899999999999999999999975 5887777888884 25677777777766654 59999876
Q ss_pred ccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHh
Q psy16872 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLK 213 (605)
Q Consensus 139 p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~ 213 (605)
... ....+...-+++=..+.++|..|. -||-.+|--.--.+..+ .|..+|..-+ |.
T Consensus 129 IRT-------TdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k---~p~~~gk~vs---------mE 189 (578)
T KOG0436|consen 129 IRT-------TDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK---NPCPPGKVVS---------ME 189 (578)
T ss_pred eec-------CCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc---CCCCCCceee---------ec
Confidence 542 233566777888888999999996 12322211000000111 1322331111 22
Q ss_pred cCCCceEE------EEcCCCccceeccccceeeec------------CCCCCCCcEEEec-----CCccc--------ch
Q psy16872 214 ENSKYCIR------FKLTNHTESWQDLVYGDISYN------------VFHNEGDPVIIKS-----DGFPT--------YH 262 (605)
Q Consensus 214 ~g~~~~iR------~k~~~~~~~~~D~v~G~i~~~------------~~~~~~D~Vi~ks-----DG~Pt--------Y~ 262 (605)
.|.+.++| |++..-.-...|.+++.-.|- ....+.|+-|-|. -|.|+ |.
T Consensus 190 sg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYV 269 (578)
T KOG0436|consen 190 SGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYV 269 (578)
T ss_pred cCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEE
Confidence 34444444 222110111122222211100 0111234433331 12221 11
Q ss_pred h-------hhhhh-h------------hcCCcceEEcCCCCcccHHHHHHHHHH----cCCCCCc--EEEecceecCCCc
Q psy16872 263 F-------ANVVD-D------------HHMNISHVLRGVEWQISTTKHILIYKA----FGWTPPK--FAHLPLLLNLNGS 316 (605)
Q Consensus 263 f-------A~vVD-D------------~~m~ITHVIRG~d~l~stpkqi~ly~a----lG~~~P~--f~H~plil~~dg~ 316 (605)
+ -.|+. + .--.-.||| |.|.+- .|..-+.| -|.++|+ +.|-= ...+|.
T Consensus 270 WfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvI-GKDIlr---FHavYWPafLmaAGlplP~~I~vHgh--wt~ngm 343 (578)
T KOG0436|consen 270 WFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVI-GKDILR---FHAVYWPAFLMAAGLPLPKMIFVHGH--WTKNGM 343 (578)
T ss_pred eHHHHhhHHHhhcCCchhccccceeecCCCceeeeh-hhhhhh---hhhhhhHHHHHhcCCCCccEEEEeee--eeecce
Confidence 1 11111 0 001234888 888763 34333333 4888884 55543 346899
Q ss_pred cccccCCCC-ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 317 KLSKRQGDM-SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 317 KLSKR~g~~-sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||||+-|++ .-.++.+. |.+++++.|+..-| . ..++..|+.+++++
T Consensus 344 KMsKSLGNvvdP~~l~~k-ygvD~vRyflLr~~--~-----l~~Dgdy~eekl~k 390 (578)
T KOG0436|consen 344 KMSKSLGNVVDPFELVQK-YGVDAVRYFLLREG--E-----LGNDGDYSEEKLIK 390 (578)
T ss_pred ecchhhccccCHHHHHHH-hCccceeeEeeecc--c-----cCCCCCccHHHHHH
Confidence 999999984 55666666 89999999998887 2 35677899999998
No 72
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.58 E-value=1.6e-07 Score=100.33 Aligned_cols=230 Identities=18% Similarity=0.259 Sum_probs=101.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCCCcH-------------------------------HH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTRFVP-------------------------------EA 120 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R~~~-------------------------------~~ 120 (605)
+|||..||||+|-.+-.++.+|.. .-+||+=-||-|+=|.+| .+
T Consensus 32 sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~~~SyaeH~ 111 (360)
T PF01921_consen 32 SPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGCHESYAEHF 111 (360)
T ss_dssp --SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSSSSCHHHHH
T ss_pred CCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCCCccHHHHH
Confidence 999999999999999999988874 248999999999877543 45
Q ss_pred HHHHHHHHHHcCCCCCCCccCCCccCcccccccH--HHHHHHHHHHHHCCCEeeeCCCHHHHHH----HHHHHHhCCCCC
Q psy16872 121 VEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRL--ALYQKEVQTLLHNGSAYKCFCSDSRLNL----IRKDAVKSGLVP 194 (605)
Q Consensus 121 ~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~--~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~----~r~~~~~~~~~~ 194 (605)
...+.+.|+.+|++++- ++|++.. ..|.+.+...+++ .+++.+ .|.+.....=.|
T Consensus 112 ~~~~~~~L~~~gie~e~----------~s~te~Y~sG~y~~~i~~aL~~---------~~~I~~Il~~~~~~~~~~~y~P 172 (360)
T PF01921_consen 112 NAPFEEFLDEFGIEYEF----------ISQTEMYRSGRYDEQIRTALEN---------RDEIREILNEYRGRERPETYSP 172 (360)
T ss_dssp HHHHHHHHHTTT---EE----------EECCCCCCTTTTHHHHCHHHHT---------HHHHHHHHHHHHHHT--TT--S
T ss_pred HHHHHHHHHHcCCceEE----------EeHHHhhhCCchHHHHHHHHHh---------HHHHHHHHHHhcCcCCCCCeee
Confidence 55556666666665522 3333322 1344444444443 223322 111111100001
Q ss_pred --CCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee-eecCCCCCCCcEEEecCCcccchhhhhhhhhc
Q psy16872 195 --KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI-SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271 (605)
Q Consensus 195 --~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i-~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~ 271 (605)
-+...|.... ...++.+....+.+.+.+.-.|.. ..+.. ..+|-..|-.-=+.-=..
T Consensus 173 f~piC~~cGri~-----------tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~---------~g~gKL~WkvDW~mRW~~ 232 (360)
T PF01921_consen 173 FLPICEKCGRID-----------TTEVTEYDPEGGTVTYRCEECGHEGEVDIT---------GGNGKLQWKVDWPMRWAA 232 (360)
T ss_dssp EEEEETTTEE-------------EEEEEEE--SSSEEEEE--TTS---EEETT---------TT-EEE-HHHHHHHHHHH
T ss_pred eeeeccccCCcc-----------cceeeEeecCCCEEEEEecCCCCEEEEecC---------CCcccccCCCcChhhhhh
Confidence 1112332210 012233332334455555443432 11110 111222222111111123
Q ss_pred CCcceEEcCCCCcc---cHHHHHHHH-HHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVLRGVEWQI---STTKHILIY-KAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVIRG~d~l~---stpkqi~ly-~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.||+-=-=|.||.+ |...-..|. +.||+++|...-.-+++...|.||||++|. +|+++..+- +.||.|+.|++.
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------HHHHHTT-S-HHHHHHHHHC
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCccCHHHHHHh-cCHHHHHHHHcc
Confidence 56665567999999 888888888 789999998777778888888899999998 699999887 788888888765
No 73
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=98.31 E-value=5.3e-06 Score=88.52 Aligned_cols=189 Identities=19% Similarity=0.260 Sum_probs=117.5
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC---------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT---------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT---------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
.|||.+||||.-+++.+|..- +.|.+.++=|-|- |++ ......+.+..++-.+|++++... -
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~-------i 80 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPD-ALRKAREELAADILAVGLDPKKTF-------I 80 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHH-HHHHHHHHHHHHHHHhCcChhheE-------E
Confidence 899999999999999999877 5666655444442 222 234555666777888999998764 3
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
|+||+-.+ |.+.+-.| -|.+|-.+++. .+.|..+ + .+ .
T Consensus 81 f~qS~~~e-~~el~~~l-------~~~~t~~~l~r----------~~~~k~k----~---------~~----------~- 118 (328)
T TIGR00233 81 FLQSDYPE-HYELAWLL-------SCQVTFGELKR----------MTQFKDK----S---------QA----------E- 118 (328)
T ss_pred EEcCCcHH-HHHHHHHH-------HccCCHHHHHh----------ccCcchh----c---------cC----------C-
Confidence 88999874 33333333 37788665531 1122110 0 00 0
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCC
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTP 301 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~ 301 (605)
+. +=|.-+|-.--+.|-.+.+.++|.-|.|....--.-.-+.+.|| +..
T Consensus 119 ----------------~~---------~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~ 173 (328)
T TIGR00233 119 ----------------NV---------PIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPK 173 (328)
T ss_pred ----------------CC---------CchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCC
Confidence 00 11333333334444557788899999998632221223445677 777
Q ss_pred CcEEEe---cceecCCCccccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 302 PKFAHL---PLLLNLNGSKLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 302 P~f~H~---plil~~dg~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|...|. |-|.+.+|+||||+.++ +.|.+ .|+.+..-+...
T Consensus 174 P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D------~~e~I~~KI~~a 218 (328)
T TIGR00233 174 PESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD------TPKQIKKKIRKA 218 (328)
T ss_pred ChhhhccccCCCCCCCCCcCCCCCCCCeEeecC------CHHHHHHHHHhc
Confidence 877664 55778888999999985 44432 788888888764
No 74
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.18 E-value=1.3e-05 Score=86.74 Aligned_cols=184 Identities=18% Similarity=0.203 Sum_probs=113.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCC----C---CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQ----T---RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~----~---R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||+- ++.+|..-...|...++-|-|--. . .........+..++-.+|++++... -|+
T Consensus 74 ~PSG~lHLGh~~-~~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~-------i~~ 145 (368)
T PRK12285 74 MPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE-------IYF 145 (368)
T ss_pred CCCCCccHHHHH-HHHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE-------EEE
Confidence 899999999986 566666656667777776666421 1 1233444457778889999998754 389
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+..+ |.+.+-.| -|.+|-.++..+ .+|.
T Consensus 146 qS~~~~-~~~l~~~l-------~~~~t~~~l~r~----------~~f~-------------------------------- 175 (368)
T PRK12285 146 QSENIK-VYDLAFEL-------AKKVNFSELKAI----------YGFT-------------------------------- 175 (368)
T ss_pred CCchHH-HHHHHHHH-------HhhCcHHHHHHh----------hCCC--------------------------------
Confidence 999876 44454444 355665555210 0110
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhc------CCcceEEcCCCCcccHHHHHHHHHHc----CC
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH------MNISHVLRGVEWQISTTKHILIYKAF----GW 299 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~------m~ITHVIRG~d~l~stpkqi~ly~al----G~ 299 (605)
| .. +=|..+|-.--+.|-.+ ..-++|.-|.|....--.-.-+.+.| |+
T Consensus 176 ---~----------~~---------~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf 233 (368)
T PRK12285 176 ---G----------ET---------NIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGF 233 (368)
T ss_pred ---C----------CC---------chhhhhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcCC
Confidence 0 00 00122222222222212 35578889999763222222445567 99
Q ss_pred CCCcEEEecceecCCCccccccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy16872 300 TPPKFAHLPLLLNLNGSKLSKRQGD--MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 300 ~~P~f~H~plil~~dg~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~ 346 (605)
..|.-.|.+++.+.+|+||||+... +.+.+ .|+.+..-+..
T Consensus 234 ~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D------~p~~I~kKI~k 276 (368)
T PRK12285 234 IKPSSTYHKFMPGLTGGKMSSSKPESAIYLTD------DPETVKKKIMK 276 (368)
T ss_pred CCchhHhhhcccCCCCCcCCCCCCCCeeeccC------CHHHHHHHHHh
Confidence 9998888899889999999999854 44443 78899888876
No 75
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=98.17 E-value=2.2e-05 Score=83.95 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=112.9
Q ss_pred CCCCcCChhhHHHHHHHHHHHHH-cCCeEEEeccCC-------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKS-HNGSFILRIEDT-------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~-~~G~fiLRiEDT-------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.|||.+||||.-+|+-+|..-.+ +|.++++=|=|. |++. ..+.......++-.+|++++... -|
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~-l~~~~~~~~~~~lA~GlDP~k~~-------if 82 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQ-FRSYTREVAATWLSLGLDPEDVI-------FY 82 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHH-HHHHHHHHHHHHhheeecccceE-------EE
Confidence 89999999999999999976644 454433323332 2222 23344446667778899998754 38
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
+||+--+.+ +.+- ++ .|.++-.+|+.+ +.|.. +....... .+
T Consensus 83 ~qS~v~~~~-eL~~-il------~~~t~~g~L~R~----------~~~K~------------k~~~~~~~--~~------ 124 (332)
T PRK12556 83 RQSDVPEIF-ELAW-IL------SCLTPKGLMNRA----------HAYKA------------KVDQNKEA--GL------ 124 (332)
T ss_pred ECCCchHHH-HHHH-HH------HccchHHHHHhc----------cHHHH------------HHhhhhhh--cc------
Confidence 999975543 2222 22 377777766432 11100 00000000 00
Q ss_pred cceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCC
Q psy16872 229 ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPP 302 (605)
Q Consensus 229 ~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P 302 (605)
.+.+ . . +=|.-+|=.--+.|-.+.+.+||.-|+|....--.-.-+.+.|| +..|
T Consensus 125 -~~~~----------~----~-----~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P 184 (332)
T PRK12556 125 -DLDA----------G----V-----NMGLYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP 184 (332)
T ss_pred -ccCC----------C----C-----cchhhhchHHHhhhhhhccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc
Confidence 0000 0 0 01334443334445556778999999998632111123334455 5667
Q ss_pred cEE---EecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 303 KFA---HLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 303 ~f~---H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
... |.+++.+.+|+||||+.++ +.+. =.|+.+..-+...
T Consensus 185 ~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~------D~p~~I~kKI~ka 227 (332)
T PRK12556 185 EYVIQEEGAILPGLDGRKMSKSYGNVIPLF------AEQEKLRKLIFKI 227 (332)
T ss_pred eeccccccccccCCCCCCCCCCCCCccccc------CCHHHHHHHHHHh
Confidence 654 7888889999999999874 2332 3688887777554
No 76
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=98.10 E-value=0.00014 Score=77.65 Aligned_cols=194 Identities=19% Similarity=0.236 Sum_probs=120.0
Q ss_pred eeEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CC--CCCcHHHHHHHHHHHHHcCCCCCCCccCC
Q psy16872 72 LKHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQ--TRFVPEAVEKLEQDLKWIGVVPDESETVG 142 (605)
Q Consensus 72 v~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~--~R~~~~~~~~I~~~L~wlGl~~De~p~~~ 142 (605)
.+-|- .|||.+||||+- ++.+|..-...|.+.++=|-|. |+ ..........+..++..+|++++...
T Consensus 31 ~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~--- 106 (329)
T PRK08560 31 PKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE--- 106 (329)
T ss_pred CEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE---
Confidence 34453 899999999976 7777777766677766655553 21 12344555667888888999987643
Q ss_pred CccCcccccccHHH--HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceE
Q psy16872 143 GNYGPYLQSKRLAL--YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCI 220 (605)
Q Consensus 143 g~~gpy~QSer~~~--Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~i 220 (605)
-++||+-... |...+-.| -|.++-.++.... +. + |.
T Consensus 107 ----i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~--~~-------~------------------~~---- 144 (329)
T PRK08560 107 ----FVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSM--TI-------M------------------GR---- 144 (329)
T ss_pred ----EEecchhhccchHHHHHHHH-------HhhccHHHHHHhh--hh-------h------------------cc----
Confidence 2688875432 22222222 2666655443110 00 0 00
Q ss_pred EEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC
Q psy16872 221 RFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT 300 (605)
Q Consensus 221 R~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~ 300 (605)
. .++ -+=|.-+|-.--+.|-...+.++|+-|.|...+--.=.-+.+.+|..
T Consensus 145 --~-----------------------~~~----~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~ 195 (329)
T PRK08560 145 --R-----------------------MEE----PDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYK 195 (329)
T ss_pred --c-----------------------CCC----CCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCC
Confidence 0 000 01134445455556666778999999999764332223455678888
Q ss_pred CCcEEEecceecCCCc--cccccC-C-CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 301 PPKFAHLPLLLNLNGS--KLSKRQ-G-DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 301 ~P~f~H~plil~~dg~--KLSKR~-g-~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.|.-.+.|+|.+.+|. ||||+. + .+.+. =.|+.+..=+..
T Consensus 196 ~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~------D~~~~I~~KI~k 239 (329)
T PRK08560 196 KPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVH------DSPEEIRRKIKK 239 (329)
T ss_pred CceEEEcCccCCCCCCCCCCcCCCCCCeeccc------CCHHHHHHHHHh
Confidence 8988899999999987 999998 3 34443 367888887766
No 77
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=4e-05 Score=80.94 Aligned_cols=196 Identities=19% Similarity=0.250 Sum_probs=120.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC----CCC----CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT----DQT----RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT----D~~----R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.|||.|||||.-.|+.||.......+....=|-|- .+. .....++..+..++=.+||+++... -|
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~-------if 85 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST-------IF 85 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE-------EE
Confidence 89999999999999999999887765666555553 111 3356677778888888999999865 38
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
.||+..+ +.+.+-.| -|.-+-.+|+.+ +.|...-. +.+. .++.
T Consensus 86 ~QS~v~e-~~eLa~~l-------~~~~~~gel~r~----------~~fKdk~~-----------~~~~------~~~~-- 128 (314)
T COG0180 86 LQSEVPE-HAELAWLL-------SCVTNFGELERM----------TQFKDKSA-----------KKGE------SIPI-- 128 (314)
T ss_pred EccCchH-HHHHHHHH-------HccCcHHHHHhh----------cCcchhhh-----------cccc------cccc--
Confidence 9999988 44554333 377776666432 22311000 0000 1111
Q ss_pred cceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCC
Q psy16872 229 ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPP 302 (605)
Q Consensus 229 ~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P 302 (605)
|-+ +||.-.- .|--+-+-++|=-|+|...---...-|.+.|+ +..|
T Consensus 129 --------Gl~-----------------~YPvlqA---ADILl~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P 180 (314)
T COG0180 129 --------GLL-----------------TYPVLQA---ADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP 180 (314)
T ss_pred --------cch-----------------hccHHHH---HHhhhccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc
Confidence 111 1232222 22222244777789998743233334556676 7777
Q ss_pred cEEEec--ceecCCC-ccccccCCCCChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 303 KFAHLP--LLLNLNG-SKLSKRQGDMSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 303 ~f~H~p--lil~~dg-~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
...+.- .+.+.+| +||||+.++.+| .|. =.|+.+..-+...-
T Consensus 181 ~~~~~~~~~i~gL~g~~KMSkS~~ns~I-~L~---D~~~~i~kKI~~~~ 225 (314)
T COG0180 181 EALISKVARLPGLDGPGKMSKSDPNSAI-FLL---DDPKTIRKKIKKAA 225 (314)
T ss_pred cccccCCCcccCCCCCCcccccCCCCee-ecc---CCHHHHHHHHHHhc
Confidence 655544 7788888 899999998333 121 36788888876653
No 78
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.95 E-value=8.9e-05 Score=77.27 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=53.7
Q ss_pred CCcceEEcCCCCcccHHHHHHHHHHcC-CCCCcEEEecceecCCCccccccCCCC-ChHHHHHcCCCHHHHHHHHHHh
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYKAFG-WTPPKFAHLPLLLNLNGSKLSKRQGDM-SVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~alG-~~~P~f~H~plil~~dg~KLSKR~g~~-sv~~~r~~G~~PeAl~nfla~l 347 (605)
.+.++|+-|.|...+--.=+-+.+.++ ++.|.-.+.|+|.+.+|.||||+.+.. ++..+ -=.|+.+..++...
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~---~dsp~~i~~ki~~a 226 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTE---KTSPYEFYQFWINA 226 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCCCcccccc---CCCHHHHHHHHHcc
Confidence 456999999998865554455666674 678888888999999999999998764 22111 13688888888653
No 79
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.91 E-value=8.6e-05 Score=79.48 Aligned_cols=193 Identities=20% Similarity=0.269 Sum_probs=113.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.+||||.-+++.+|..-...+..+++--|+. |++ ...+....+..++-.+|++++... -|+
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~-~i~~~~~~~~~~~lA~G~dp~k~~-------i~~ 81 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPE-KIRRNILEVALDYLAVGIDPAKST-------IFI 81 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHH-HHHHHHHHHHHHHHHhCcChhHeE-------EEE
Confidence 79999999999999999977776666666543333 222 233444556667778999987643 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+-.+.+ +... .+.|.++-.++. |..+. .+++. ++...
T Consensus 82 qS~~~e~~-~l~~-------~l~~~~~~~~l~--r~~~~--------------------k~~~~-------~~~~~---- 120 (333)
T PRK12282 82 QSQIPELA-ELTM-------YYMNLVTVARLE--RNPTV--------------------KTEIA-------QKGFG---- 120 (333)
T ss_pred CCcchHHH-HHHH-------HHHhhchHHHHh--hchHH--------------------HHHHh-------ccCCC----
Confidence 99876543 2221 145777766553 11110 00000 00000
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC--CCCCcEE--
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG--WTPPKFA-- 305 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG--~~~P~f~-- 305 (605)
| + . .=|..+|=.--+.|-.+.+.++|.-|.|....--.-.-+.+.|| +..|.|.
T Consensus 121 ---~----------~----~-----~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p 178 (333)
T PRK12282 121 ---R----------S----I-----PAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP 178 (333)
T ss_pred ---C----------C----C-----cchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc
Confidence 0 0 0 00444444445555567789999999998632211223344566 4333333
Q ss_pred -----EecceecCCC-ccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 306 -----HLPLLLNLNG-SKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 306 -----H~plil~~dg-~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
|.|+|.+.+| +||||+.++ +.+.+ .|+.+..-+..
T Consensus 179 ~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D------~pe~I~kKI~~ 220 (333)
T PRK12282 179 EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD------DADTIKKKVMS 220 (333)
T ss_pred hhcccCCCcccCCCCCCcCCCCCCCeeeeeC------CHHHHHHHHHh
Confidence 5678888887 799999874 33332 78888888866
No 80
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.89 E-value=6.6e-05 Score=78.00 Aligned_cols=196 Identities=22% Similarity=0.192 Sum_probs=118.7
Q ss_pred CCCC-cCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CCC-----C------CcHHHHHHHHHHHHHcCCC--CCC
Q psy16872 77 TSTG-LLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQT-----R------FVPEAVEKLEQDLKWIGVV--PDE 137 (605)
Q Consensus 77 ~PtG-~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~~-----R------~~~~~~~~I~~~L~wlGl~--~De 137 (605)
.||| .+||||+-.++ ++..-...|.+.++=|-|- |+. | ......+.+..++..+|++ ++.
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 7999 99999999765 4444444565665555551 332 2 2345566788888999986 443
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCC
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSK 217 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~ 217 (605)
. --+.||+-.+. .+...++. +-|+|+-.++... .+- .++...+
T Consensus 87 ~-------~i~~~s~~~~~--l~~~~~l~----l~~~~~~~~l~~~--~~~--------------------k~r~~~~-- 129 (269)
T cd00805 87 A-------KFVNNSDWLLS--LYTLDFLR----LGKHFTVNRMLRR--DAV--------------------KVRLEEE-- 129 (269)
T ss_pred e-------EEEEchHhhcc--CCHHHHHH----HHhhCcHHHHHHH--HHH--------------------HHHHhcC--
Confidence 2 24788876554 12222221 3477887666321 111 0111000
Q ss_pred ceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc
Q psy16872 218 YCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF 297 (605)
Q Consensus 218 ~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al 297 (605)
.+ . +=|.-+|-.--+.|=...+.++|+-|.|...+--.-.-+.+.+
T Consensus 130 --------~~---------------------~-----~~~~~~YP~lQaaDi~~l~~~l~~~G~DQ~~~i~~~rd~a~r~ 175 (269)
T cd00805 130 --------EG---------------------I-----SFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKL 175 (269)
T ss_pred --------CC---------------------C-----cHHHHHHHHHHHhhHHHHhCCeeEecHHHHHHHHHHHHHHHHh
Confidence 00 0 0112333333334444566699999999987766666777889
Q ss_pred CCCCCcEEEecceecCCCccccccCCCCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 298 GWTPPKFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 298 G~~~P~f~H~plil~~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
++..|.-.|.|++.+.+|+||||+.++..-- +. ==.|+.+..++...
T Consensus 176 ~~~~~~~l~~~ll~~l~G~KMSKS~~~~~~i-~l--~dsp~~i~~Ki~~a 222 (269)
T cd00805 176 GYKKVVGLTTPLLTGLDGGKMSKSEGNAIWD-PV--LDSPYDVYQKIRNA 222 (269)
T ss_pred CCCCcEEEeeccccCCCCCcccCCCCCcccc-cC--CCCHHHHHHHHHcC
Confidence 9988888899999999999999998764211 11 13688888888653
No 81
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.82 E-value=0.00011 Score=88.77 Aligned_cols=161 Identities=21% Similarity=0.272 Sum_probs=105.6
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC---------------------------------CCcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT---------------------------------RFVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~---------------------------------R~~~~~ 120 (605)
|+|||.||+||+++..+-..+||-+ .|.-+++.=..|-. ..+..+
T Consensus 50 Py~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~ 129 (975)
T PRK06039 50 PTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRY 129 (975)
T ss_pred CCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 68777766555420 124567
Q ss_pred HHHHHHHHHHcC--CCCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCC
Q psy16872 121 VEKLEQDLKWIG--VVPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196 (605)
Q Consensus 121 ~~~I~~~L~wlG--l~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y 196 (605)
.+.+.+.++.|| ++||.. |+..+ +.+.-+....+|.++|.+|+..- +-.|
T Consensus 130 ~~~~~~~~~rlG~~~Dw~~~---------y~T~d~~y~~~v~~~F~~l~~kGliyr~~~-----------------~v~w 183 (975)
T PRK06039 130 TDEWEEYTERLGRWVDFDNP---------YKTLDNEYMESVWWALKQLYDKGLLYKGYR-----------------VVPY 183 (975)
T ss_pred HHHHHHHHHHhCceeecCCC---------cCcCCHHHHHHHHHHHHHHHHCCCEEecce-----------------eeee
Confidence 888999999999 678763 44433 33334455669999999997421 1245
Q ss_pred CCcCc-CCCHHHHH--HHHhcCCCceEEEEcCC-Cc------cceeccccceeeecCCCCCCCcEEEecCCcccchhh
Q psy16872 197 DNKCR-NLTQEQID--EKLKENSKYCIRFKLTN-HT------ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFA 264 (605)
Q Consensus 197 ~~~cr-~ls~~e~~--~~~~~g~~~~iR~k~~~-~~------~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA 264 (605)
+-.|. .|+..|+. -+...+....|+|++.. .. ++=-..+.|.+....+.. .|.++.+.+| ..|-+|
T Consensus 184 cp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~-~~Y~~~~~~~-~~yi~a 259 (975)
T PRK06039 184 CPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPD-IDYVKVEGGG-EVYILA 259 (975)
T ss_pred cCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCC-CceEEEecCC-eEEEEh
Confidence 55674 48888886 23445667788998842 11 112245566654444433 4677777665 455433
No 82
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.81 E-value=6.7e-05 Score=89.69 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=65.8
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC---------------------------------CCcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT---------------------------------RFVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~---------------------------------R~~~~~ 120 (605)
|+|||.||+||+++.+.-..+||.+ .|.-++.+-..|.. ..+..+
T Consensus 45 Py~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~ 124 (861)
T TIGR00392 45 PYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQ 124 (861)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHH
Confidence 6999999999999999999999964 68877765554421 123457
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC 173 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C 173 (605)
++.+.+.|+.||+ +||.. |... ++.+.-+....+|.++|.+|+.
T Consensus 125 ~~~~~~~~~~lG~~~dw~~~---------y~T~~p~y~~~~~~~f~~l~~~gliyr~ 172 (861)
T TIGR00392 125 IEEQREQFQRLGVWGDWENP---------YKTMDPSYEESQWWLFKEAHEKGLLYRG 172 (861)
T ss_pred HHHHHHHHHHhCceecCCCC---------cCcCCHHHHHHHHHHHHHHHHCCCEeec
Confidence 8889999999999 78763 3333 2333335566789999999973
No 83
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.73 E-value=8.6e-05 Score=89.18 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=65.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------------CC-------CcHHHHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------------TR-------FVPEAVEKL 124 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------------~R-------~~~~~~~~I 124 (605)
|++||.|||||+++.+.-..++|.+ .|.-++.+=.+|- +. ...++.+.+
T Consensus 58 PyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~ 137 (912)
T PRK05743 58 PYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQ 137 (912)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 5877765544442 11 234567889
Q ss_pred HHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 125 EQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 125 ~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
.++++.||+ +||.. |+.. ++...-+....+|.++|..|+
T Consensus 138 ~~~~~~lG~~~dw~~~---------~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 138 REDFKRLGVLGDWDNP---------YLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHhCCcccCCCC---------cCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999999999 88863 3332 333445667778999999997
No 84
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.71 E-value=6.1e-05 Score=89.67 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=67.3
Q ss_pred EecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCC
Q psy16872 74 HFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVP 135 (605)
Q Consensus 74 ~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~ 135 (605)
.+|+|||.|||||+++.+....+||.+ .|.-++.+-.+|. ...+.++.+.+.+.|+.||+..
T Consensus 36 ~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~ 115 (842)
T TIGR00396 36 MFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSY 115 (842)
T ss_pred CCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 467999999999999999999999975 5887877776664 1124578899999999999755
Q ss_pred CCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 136 DESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 136 De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
|-.. +|..+ ++.+.-+....+|.++|.+|+
T Consensus 116 Dw~~-------~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 116 DWDR-------EIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred cCCC-------CcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 4221 13332 233333444569999999996
No 85
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.71 E-value=0.0021 Score=70.07 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=55.2
Q ss_pred cccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC-CCCcEEEecceecC-CC-ccccccCCC--CChHHHHH
Q psy16872 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW-TPPKFAHLPLLLNL-NG-SKLSKRQGD--MSVEAIRN 332 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~-~~P~f~H~plil~~-dg-~KLSKR~g~--~sv~~~r~ 332 (605)
..+|=.--+.|-...+.++|.-|.|...---.-.-+.+.+|. ..|...|.|+|.+. +| +||||+.++ +.+.+
T Consensus 195 ~l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D--- 271 (383)
T PTZ00126 195 QILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED--- 271 (383)
T ss_pred hhhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC---
Confidence 334444444555567888999899874110111234456885 46777789999998 56 699999865 44443
Q ss_pred cCCCHHHHHHHHHHh
Q psy16872 333 SEFLPNALINFVTNF 347 (605)
Q Consensus 333 ~G~~PeAl~nfla~l 347 (605)
.|+.+..-+...
T Consensus 272 ---spe~I~kKI~kA 283 (383)
T PTZ00126 272 ---SEEDVNRKIKKA 283 (383)
T ss_pred ---CHHHHHHHHHhC
Confidence 788999888763
No 86
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.69 E-value=5.9e-05 Score=89.44 Aligned_cols=91 Identities=23% Similarity=0.290 Sum_probs=69.5
Q ss_pred ecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCC
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPD 136 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~D 136 (605)
+|+|||.|||||+++.+....+||.+ .|.-++.+-.+|. .....++.+.|.+.|+.||+..|
T Consensus 40 pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~D 119 (805)
T PRK00390 40 FPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYD 119 (805)
T ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 47999999999999999999999964 5887777666664 12356789999999999999544
Q ss_pred CCccCCCccCccc--ccccHHHHHHHHHHHHHCCCEee
Q psy16872 137 ESETVGGNYGPYL--QSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 137 e~p~~~g~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
-.. +|. ..++.+.-+....+|.++|.+|.
T Consensus 120 w~~-------~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 120 WSR-------EIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CCC-------CeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 211 122 22455666788889999999996
No 87
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.67 E-value=0.00045 Score=75.92 Aligned_cols=195 Identities=21% Similarity=0.260 Sum_probs=114.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHH-cCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKS-HNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~-~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
+|||.+||||.-.|+-||+...+ .|.++++=|=| -|+++... ....+..++-.+||+++... -|
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~-~~~e~aa~~LA~GlDPek~~-------if 81 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQR-STLEIAATWLAAGLDPERVT-------FY 81 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHH-HHHHHHHHHHHhCCCccceE-------EE
Confidence 89999999999999999998864 34444332222 34444333 33446777788899998754 38
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
+||+--+ +.+..--| .|.++-.+|+.+. .|. +........|..
T Consensus 82 ~QSdvpe-h~EL~wiL-------~~it~~g~L~Rm~----------q~K--------~k~~~~~~~g~~----------- 124 (431)
T PRK12284 82 RQSDIPE-IPELTWLL-------TCVAGKGLLNRAH----------AYK--------AAVDKNVAAGED----------- 124 (431)
T ss_pred ECCcchh-HHHHHHHH-------HhhhhHHHHHhhh----------HHH--------HHHHhhhccccC-----------
Confidence 9998654 33444333 3877777775431 110 000000000100
Q ss_pred cceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHH----HHcC------
Q psy16872 229 ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIY----KAFG------ 298 (605)
Q Consensus 229 ~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly----~alG------ 298 (605)
.++-+ +=|..+|=.--+.|-.+.+.+||--|+|-. +|+.|- +.|+
T Consensus 125 ------------------~~~~i---~~Gll~YPvLqAADILly~ad~VPVG~DQ~----qHlELaRdIA~rFN~~yg~~ 179 (431)
T PRK12284 125 ------------------PDAGV---TAGLFMYPVLMAADILMFNAHKVPVGRDQI----QHIEMARDIAQRFNHLYGGE 179 (431)
T ss_pred ------------------cccCc---chHHhhchHHHHhhhhhcCCCEEEEcchhH----HHHHHHHHHHHHHhhhcCCc
Confidence 00000 114555555555666677889999999986 344333 3343
Q ss_pred -CCCCc--E-EEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 299 -WTPPK--F-AHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 299 -~~~P~--f-~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
+..|+ . .|.+.|.+.+|+||||+.++ +.|. =.|+.|..-+...
T Consensus 180 ~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~------Ds~~~I~kKI~~A 227 (431)
T PRK12284 180 FFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLF------APREELKKAIFSI 227 (431)
T ss_pred ccCCCccccccccccccCCCCccccCCCCCEeeec------CCHHHHHHHHhcC
Confidence 22343 2 35678899999999999863 3332 2677787777654
No 88
>PLN02943 aminoacyl-tRNA ligase
Probab=97.64 E-value=0.0006 Score=82.42 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=86.8
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC-----------------------CC---------cHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT-----------------------RF---------VPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~-----------------------R~---------~~~~~ 121 (605)
|++||.||+||+++..+-..+||-+ .|.-++.+-.+|.. |+ +.++.
T Consensus 97 P~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~ 176 (958)
T PLN02943 97 PNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYG 176 (958)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 68888877777642 10 14567
Q ss_pred HHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCC
Q psy16872 122 EKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYD 197 (605)
Q Consensus 122 ~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~ 197 (605)
+.|.+.++.||+ +|+.. |+.. ++...-+....+|.++|.+|+.. .+-.|+
T Consensus 177 ~~~~~~~~~lG~s~Dw~~~---------~~T~d~~~~~~v~~~F~~l~~~Gliyr~~-----------------~~V~wc 230 (958)
T PLN02943 177 GTITNQIKRLGASCDWSRE---------RFTLDEQLSRAVVEAFVRLHEKGLIYQGS-----------------YMVNWS 230 (958)
T ss_pred HHHHHHHHHhCcceecCCC---------cccCCHHHHHHHHHHHHHHHHCCCEEecC-----------------ceeccC
Confidence 899999999999 56542 3333 23344456667899999999731 122455
Q ss_pred CcCc-CCCHHHHHHHHhcCCCceEEEEc
Q psy16872 198 NKCR-NLTQEQIDEKLKENSKYCIRFKL 224 (605)
Q Consensus 198 ~~cr-~ls~~e~~~~~~~g~~~~iR~k~ 224 (605)
-.|. -|+..|++-....|.-+.|||++
T Consensus 231 p~~~Tals~~Evey~e~~~~~~~i~f~l 258 (958)
T PLN02943 231 PNLQTAVSDLEVEYSEEPGTLYYIKYRV 258 (958)
T ss_pred CCCCCCcCHHHhhcccccccEEEEEEEE
Confidence 5664 37888876544556556677776
No 89
>PLN02563 aminoacyl-tRNA ligase
Probab=97.61 E-value=0.00011 Score=88.22 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=70.0
Q ss_pred eEecCCCCc-CChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCC
Q psy16872 73 KHFLTSTGL-LHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGV 133 (605)
Q Consensus 73 ~~fp~PtG~-LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl 133 (605)
..||+|||. |||||+++.+....+||-+ .|.-+|.+-.+|. .-.+.++++.+.+.|+.||+
T Consensus 116 ~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~ 195 (963)
T PLN02563 116 DMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGF 195 (963)
T ss_pred eCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCc
Confidence 356899997 9999999999999999965 6887777666662 22456888999999999995
Q ss_pred --CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 134 --VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 134 --~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
+||.... ....++...-+....+|.++|.+|+
T Consensus 196 s~DW~r~~~-------T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 196 SYDWDREIS-------TTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred EeeCCCCee-------cCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 5554311 1223444555677889999999997
No 90
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.59 E-value=0.0024 Score=69.69 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=57.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC----CC---CCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT----DQ---TRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT----D~---~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
+|||.+||||.-.++-||+ ..+.+++..+=|-|- ++ ..........+..++-.+|++++... -|.
T Consensus 10 qPSG~~HLGnylG~ik~wv-~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~-------if~ 81 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWV-KLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQAT-------LFI 81 (398)
T ss_pred CCCCcchHHHHHHHHHHHH-HHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceE-------EEE
Confidence 8999999999999998887 445566655444442 11 12334455567888889999998754 388
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHH
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLN 181 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~ 181 (605)
||+--+ |.+.+ -.+.|.++-.+|+
T Consensus 82 QS~v~e-h~eL~-------wil~~~t~~~~L~ 105 (398)
T PRK12283 82 QSKVPE-HAELH-------LLLSMITPLGWLE 105 (398)
T ss_pred CCCchH-HHHHH-------HHHHhhccHHHHH
Confidence 997742 22211 1234777765553
No 91
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.58 E-value=0.00021 Score=86.68 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=69.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCCC---------------------------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQTR---------------------------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~R---------------------------------~~~~~ 120 (605)
|+|||.||+||+++.+.-..+||.+ .|.-++.+-.+|..= -+.++
T Consensus 69 P~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~ 148 (995)
T PTZ00419 69 PNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKH 148 (995)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 698888888887430 02577
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
.+.|.+.|+.||+ +|+..-. ....++....+....+|.++|..|+
T Consensus 149 ~~~~~~~~~~lG~~~DW~~~~~-------T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 149 GNNICNQLRRLGSSLDWSREVF-------TMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHhCceeeCCCCcC-------cCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 8889999999995 5554311 1223455677788889999999997
No 92
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.55 E-value=0.00026 Score=86.28 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=82.8
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC---------C------------------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT---------R------------------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~---------R------------------------~~~~~ 120 (605)
|++||.|||||+++.+.-..+||.+ .|.-++.+-.+|.- + .+.++
T Consensus 57 P~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~ 136 (1052)
T PRK14900 57 PNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQY 136 (1052)
T ss_pred CCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999965 58877777766631 1 12466
Q ss_pred HHHHHHHHHHcCCCCCCCccCCCccCccc--ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCC
Q psy16872 121 VEKLEQDLKWIGVVPDESETVGGNYGPYL--QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198 (605)
Q Consensus 121 ~~~I~~~L~wlGl~~De~p~~~g~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~ 198 (605)
.+.|.+.++.||+..|=.- +|+ ..++.+.-+....+|.++|..|+..- +-.|+-
T Consensus 137 ~~~~~~~~~~lG~s~Dw~~-------~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~-----------------~v~wcp 192 (1052)
T PRK14900 137 GSRIGEQHKALGASLDWQR-------ERFTMDEGLSRAVREVFVRLHEEGLIYREKK-----------------LINWCP 192 (1052)
T ss_pred HHHHHHHHHHhchheecCC-------CcCcCCHHHHHHHHHHHHHHHHCCCEEeccc-----------------eeccCC
Confidence 7889999999996544211 233 23455566777889999999997321 123555
Q ss_pred cCc-CCCHHHHHHHH-hcCCCceEEEEc
Q psy16872 199 KCR-NLTQEQIDEKL-KENSKYCIRFKL 224 (605)
Q Consensus 199 ~cr-~ls~~e~~~~~-~~g~~~~iR~k~ 224 (605)
.|. .|+..|++... ..|.-+.|+|.+
T Consensus 193 ~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l 220 (1052)
T PRK14900 193 DCRTALSDLEVEHEEAHQGELWSFAYPL 220 (1052)
T ss_pred CCCCCccHHHhcccCCCCCeEEEEEEEe
Confidence 553 36777764322 223333456665
No 93
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.52 E-value=0.00021 Score=74.86 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=122.8
Q ss_pred ceeEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CC----CCCcHHHHHHHHHH--HHHcCCCCCC
Q psy16872 71 KLKHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQ----TRFVPEAVEKLEQD--LKWIGVVPDE 137 (605)
Q Consensus 71 ~v~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~----~R~~~~~~~~I~~~--L~wlGl~~De 137 (605)
..+-|- .|||.|||||+-. +.++..-...|.+.++=|-|- |+ .|......+.+..+ +-.+|++++.
T Consensus 5 ~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k 83 (292)
T PF00579_consen 5 PFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEK 83 (292)
T ss_dssp SEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTT
T ss_pred CcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 345554 8999999997764 455666666888877755443 22 34455566666666 6788999876
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCC
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSK 217 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~ 217 (605)
.. -+.||+-.+.. ++...|. |.++--++..+... .++..++..|+
T Consensus 84 ~~-------i~~~s~~~~~~-~~~~~l~-------~~~~~~~l~~~~~~-------------------~~~~~~~~~~~- 128 (292)
T PF00579_consen 84 TE-------IFRQSDWPEHM-ELWWFLS-------DVARLFSLNRMLRF-------------------KDVKKRLKNGE- 128 (292)
T ss_dssp EE-------EEEGHHHHCHH-HHHHHHH-------HHHBHHHHHHHHHH-------------------HHHHHHHSSTT-
T ss_pred eE-------EEeCCCccccc-chhhhhc-------ccccccchhhhhhh-------------------ccccccccccc-
Confidence 43 37899776555 5555554 44444444432210 11122222210
Q ss_pred ceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc
Q psy16872 218 YCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF 297 (605)
Q Consensus 218 ~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al 297 (605)
+ . +=|.-+|-.--+.|=...+.++|+-|.|...+---=.-+.+.+
T Consensus 129 ---------~-~-------------------------~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~ 173 (292)
T PF00579_consen 129 ---------G-I-------------------------SLGEFSYPLLQAADILLLKADLVPGGIDQRGHIELARDLARKF 173 (292)
T ss_dssp ---------T-S-------------------------BHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHH
T ss_pred ---------C-c-------------------------ceeeEEcccccccceeeeccccccccchHHHHHHHHHHHHhhh
Confidence 0 0 0012233333345555677779999999886555445666778
Q ss_pred CCC----CCcEEEecceecCCCc-cccccCCCCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 298 GWT----PPKFAHLPLLLNLNGS-KLSKRQGDMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 298 G~~----~P~f~H~plil~~dg~-KLSKR~g~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|.. .|...|.|++.+.+|. ||||++++.+|. +- =.|+.+...+...
T Consensus 174 ~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~-L~---d~~~~i~~Ki~~a 224 (292)
T PF00579_consen 174 NYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIF-LD---DSPEEIRKKIKKA 224 (292)
T ss_dssp THHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-B-TT---TTHHHHHHHHHHS
T ss_pred cccccccCchheeeccccccCCccccCccCCccEEE-Ee---ccchhHHHHHHHH
Confidence 887 8999999999999999 999999873331 11 2577888887664
No 94
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.50 E-value=0.00033 Score=84.60 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=63.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC------------------CC--------------CcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ------------------TR--------------FVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~------------------~R--------------~~~~~~ 121 (605)
|+|||.||+|||++...-..++|.+ .|.-++.+=..|- .+ ...+++
T Consensus 63 PyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i 142 (961)
T PRK13804 63 PYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWI 142 (961)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999975 5766654444331 11 234567
Q ss_pred HHHHHHHHHcCCC--CCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVV--PDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~--~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.+.++++.||+. ||. ||... ++...-+....+|.++|.+|+
T Consensus 143 ~~~~~~~~rlG~~~Dw~~---------~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 143 DVQREEFKRLGVLGDWDN---------PYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHhCceecCCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7889999999995 765 24433 233344556678999999997
No 95
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.50 E-value=0.00032 Score=84.86 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=65.6
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------------C--------------CcHHHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------------R--------------FVPEAVEK 123 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------------R--------------~~~~~~~~ 123 (605)
|++||.||||||++.+.-..++|.+ .|.-++.+-.+|-. | ...++++.
T Consensus 41 Py~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~ 120 (974)
T PLN02843 41 PYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDT 120 (974)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999965 57777665555521 1 13456777
Q ss_pred HHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 124 LEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 124 I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.+.++.||+ +||.. |+.. ++...-.....+|.++|..|+
T Consensus 121 ~~~~~~~lG~~~Dw~~~---------y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 121 QRESFKRYGVWGDWENP---------YLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHhCCceecCCC---------CccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 8999999999 89863 3332 333444566778999999997
No 96
>PLN02486 aminoacyl-tRNA ligase
Probab=97.48 E-value=0.0025 Score=69.46 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=47.3
Q ss_pred ceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 275 SHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 275 THVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
++|=.|.|....--.-.-+.+.+|...|.+.|.+++.+.+| +||||+.++ +.+.+ .|+.+.+.+....
T Consensus 221 ~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A 292 (383)
T PLN02486 221 CLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINKYA 292 (383)
T ss_pred ceeecccchHHHHHHHHHHHHHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhcCC
Confidence 56667887432222223455778988899998777767666 699999975 45543 8999999997644
No 97
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.44 E-value=0.00034 Score=85.84 Aligned_cols=124 Identities=21% Similarity=0.235 Sum_probs=87.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------------C-----------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------------R-----------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------------R-----------------~~~~~ 120 (605)
|++||.||+|||++..+-..++|.+ .|.-++++-.+|.- + .+.++
T Consensus 111 PyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~ 190 (1205)
T PTZ00427 111 PFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKY 190 (1205)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999975 69888888777721 0 13456
Q ss_pred HHHHHHHHHHcC--CCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCC
Q psy16872 121 VEKLEQDLKWIG--VVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196 (605)
Q Consensus 121 ~~~I~~~L~wlG--l~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y 196 (605)
.+.+.+.++.|| ++||.. |+.. ++.+.-+....+|.++|..|+-+ .+-.|
T Consensus 191 ~~~~~~~~~rlG~~iDw~~~---------y~T~d~~~~~~v~~~f~~L~ekGlIYr~~-----------------k~V~w 244 (1205)
T PTZ00427 191 SNEWVKTVERIGRWIDFKND---------YKTMDKTFMESVWWVFSELYKNNYVYKSF-----------------KVMPY 244 (1205)
T ss_pred HHHHHHHHHHhCcEEecCCC---------cCcCCHHHHHHHHHHHHHHHHCCCEEecc-----------------eeecc
Confidence 788899999999 899863 4443 34455566777999999999731 12245
Q ss_pred CCcCc-CCCHHHHH--HHHhcCCCceEEEEcC
Q psy16872 197 DNKCR-NLTQEQID--EKLKENSKYCIRFKLT 225 (605)
Q Consensus 197 ~~~cr-~ls~~e~~--~~~~~g~~~~iR~k~~ 225 (605)
+-.|. .|+..|+. -+...+....|+|++.
T Consensus 245 cp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~ 276 (1205)
T PTZ00427 245 SCKCNTPISNFELNLNYKDTPDPSIIISFVLC 276 (1205)
T ss_pred CCCCCCchhHHHhhcccccccCceEEEEeecc
Confidence 55664 47777763 2223344456777653
No 98
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00015 Score=85.09 Aligned_cols=94 Identities=21% Similarity=0.282 Sum_probs=67.6
Q ss_pred eeEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEE---ecc-------------CCCCCCCcHHHHHHHHHHHHHcCC
Q psy16872 72 LKHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFIL---RIE-------------DTDQTRFVPEAVEKLEQDLKWIGV 133 (605)
Q Consensus 72 v~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiL---RiE-------------DTD~~R~~~~~~~~I~~~L~wlGl 133 (605)
+-.||+|||.||+||+||+.....+||-+ +|.=+| =++ .+||.--+....+.+.+.|+.||+
T Consensus 39 l~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~ 118 (814)
T COG0495 39 LVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGF 118 (814)
T ss_pred EeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCC
Confidence 56779999999999999999999999964 465444 111 347777788999999999999986
Q ss_pred --CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 134 --VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 134 --~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
||+.......| ++..--+-...+|.++|.+|.
T Consensus 119 siDW~Ref~T~Dp-------~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 119 SIDWRREFATCDP-------EYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred ccccccceecCCc-------cHHHHHHHHHHHHHHCCCEEe
Confidence 56554332222 222222344558999999996
No 99
>KOG0435|consensus
Probab=97.34 E-value=0.00018 Score=81.37 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=68.9
Q ss_pred CceeEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEE----------ecc------CCCCCCCcHHHHHHHHHHHHHc
Q psy16872 70 LKLKHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFIL----------RIE------DTDQTRFVPEAVEKLEQDLKWI 131 (605)
Q Consensus 70 ~~v~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiL----------RiE------DTD~~R~~~~~~~~I~~~L~wl 131 (605)
=++.+||+|||-|||||+|.+..+...||-+ +|-=++ =-| .++|.--+..-++.+.+.|..|
T Consensus 60 YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~l 139 (876)
T KOG0435|consen 60 YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSL 139 (876)
T ss_pred eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHc
Confidence 3579999999999999999999999999965 454443 222 3455555678889999999999
Q ss_pred CC--CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 132 GV--VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 132 Gl--~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
|+ +||......-| ++..--+-..-+|.++|.||.
T Consensus 140 g~~FDWdrEiSTC~P-------dYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 140 GISFDWDREISTCEP-------DYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred CcccccccccccCCc-------chhHHHHHHHHHHHHhhhhhc
Confidence 98 56655432222 223333445668999999997
No 100
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.30 E-value=0.0014 Score=70.33 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=107.9
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC----CCC--CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT----DQT--RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT----D~~--R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
.|||.+||||.-.++-+|..-... .+.++=|-|- +.. -...+....+..++-.+|++++... -|+|
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~-------if~q 80 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKST-------IFVQ 80 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheE-------EEEe
Confidence 799999999999888888544432 3333333321 111 1233444556677778899987653 3789
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccc
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTES 230 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 230 (605)
|+-.+. .+.+-.| .|+.+-.+|+.. +.|. ++.. +.. .
T Consensus 81 S~~~~~-~el~~~l-------~~~~~~~~l~r~----------~~~k------------~~~~-------~~~--~---- 117 (333)
T PRK00927 81 SHVPEH-AELAWIL-------NCITPLGELERM----------TQFK------------DKSA-------KQK--E---- 117 (333)
T ss_pred CCCchh-HHHHHHH-------HhhhhHHHHHhh----------hhHH------------HHHh-------ccC--C----
Confidence 985443 2333222 355554444311 0010 0000 000 0
Q ss_pred eeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC------CCCcE
Q psy16872 231 WQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW------TPPKF 304 (605)
Q Consensus 231 ~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~------~~P~f 304 (605)
+ . +=|..+|=.--+.|-...+.++|.-|.|....--.-.-+.+.++. ..|..
T Consensus 118 -------------~----~-----~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~ 175 (333)
T PRK00927 118 -------------N----V-----SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEP 175 (333)
T ss_pred -------------C----C-----CcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChh
Confidence 0 0 013334443444444567889999999986322222234445552 46765
Q ss_pred EE---ecceecCCCc--cccccCCC----CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 305 AH---LPLLLNLNGS--KLSKRQGD----MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 305 ~H---~plil~~dg~--KLSKR~g~----~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.| .|+|.+.+|. ||||+.++ +.+.+ .|+.+..-+...
T Consensus 176 i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D------~~~~I~~KI~~a 221 (333)
T PRK00927 176 LIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD------DPKTIAKKIKKA 221 (333)
T ss_pred hhccccccccCCCCCCCCCCCCCCCCCCeEEeeC------CHHHHHHHHHhC
Confidence 44 3888999886 99999874 44443 788888888764
No 101
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.0023 Score=70.45 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=62.6
Q ss_pred ccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHc
Q psy16872 259 PTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNS 333 (605)
Q Consensus 259 PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~ 333 (605)
.+|-+--+.|=... +++.++-|.|...|--.=+-+.+.+|...|.-.+.|+|.+.+|+||||+.++ +++. +.
T Consensus 168 f~YpllQa~D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI~L~---d~ 244 (410)
T PRK13354 168 FFYPLLQAYDFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAIWLD---PE 244 (410)
T ss_pred hccHHHHhhhHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCceecc---CC
Confidence 33444444444444 8899999999987766666777888988786678999999999999999874 4443 33
Q ss_pred CCCHHHHHHHHHH
Q psy16872 334 EFLPNALINFVTN 346 (605)
Q Consensus 334 G~~PeAl~nfla~ 346 (605)
-.+|+.+..++..
T Consensus 245 ~tsp~~i~qki~~ 257 (410)
T PRK13354 245 KTSPYEFYQFWMN 257 (410)
T ss_pred CCCHHHHHHHHHc
Confidence 4668888888864
No 102
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.28 E-value=0.0037 Score=68.82 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=59.8
Q ss_pred ccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCC-CCChHHHHHc
Q psy16872 259 PTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG-DMSVEAIRNS 333 (605)
Q Consensus 259 PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g-~~sv~~~r~~ 333 (605)
.+|-+--+.|=... +.++++=|.|...|--.=.-+.+.+|..++.-.+.|+|.+.+|+||||+.+ ++++. +.
T Consensus 170 f~Yp~LQa~D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~naI~L~---d~ 246 (408)
T PRK05912 170 FLYPLLQGYDFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAVWLD---EE 246 (408)
T ss_pred hhhHHHHHhhHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCceeCC---CC
Confidence 33443344444444 788888899987654444456677886655447899999999999999986 35554 34
Q ss_pred CCCHHHHHHHHHHh
Q psy16872 334 EFLPNALINFVTNF 347 (605)
Q Consensus 334 G~~PeAl~nfla~l 347 (605)
-..|+.+..++...
T Consensus 247 ~tsp~~i~qki~~~ 260 (408)
T PRK05912 247 KTSPYEMYQKWMNI 260 (408)
T ss_pred CCCHHHHHHHHhcC
Confidence 46899999998764
No 103
>PLN02882 aminoacyl-tRNA ligase
Probab=97.23 E-value=0.0012 Score=81.26 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=68.2
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------------C-----------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------------R-----------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------------R-----------------~~~~~ 120 (605)
|++||.+|+||+++..+-..+||.+ .|.-++++-.+|-- + .+..+
T Consensus 47 PyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~ 126 (1159)
T PLN02882 47 PFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRY 126 (1159)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999975 58888777666521 1 13467
Q ss_pred HHHHHHHHHHcC--CCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 121 VEKLEQDLKWIG--VVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 121 ~~~I~~~L~wlG--l~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
.+.+.+.++.|| ++||.. |+.. ++.+.-+....+|.++|..|+
T Consensus 127 ~~~~~~~~~rlG~~~D~~~~---------y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 127 SKEWEKTVTRTGRWIDFEND---------YKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHcCcEEECCCC---------cCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 788999999999 899873 4433 344455667779999999997
No 104
>PLN02381 valyl-tRNA synthetase
Probab=97.22 E-value=0.0012 Score=80.47 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=66.2
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC-------------------C--------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT-------------------R--------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~-------------------R--------------~~~~~ 120 (605)
|++||.|||||+++...-..+||-+ .|.-++.+-.+|.. | -+.++
T Consensus 137 Py~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~ 216 (1066)
T PLN02381 137 PNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEY 216 (1066)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 58777766666531 0 13466
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC 173 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C 173 (605)
.+.|.+.++.||+ +|+. +|+.. ++...-+....+|.++|..|+.
T Consensus 217 ~~~~~~q~~~lG~s~Dw~~---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 217 GGTILNQLRRLGASLDWSR---------ECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHhCchhccCC---------ccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 7888999999995 5544 24443 3344456677799999999974
No 105
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.14 E-value=0.00078 Score=81.31 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=48.8
Q ss_pred C-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 302 P-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 302 P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
| .+.|+++++. +|+||||+.|+ +++.++.+. |.++|+|.||+..| .. ..+..||.+.+.+
T Consensus 605 Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~-yGaDalRl~Ll~~~-~~------~~D~~fs~~~~~~ 666 (938)
T TIGR00395 605 PRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEK-FGADVARLYIADAA-ET------VQDADWKESEVEG 666 (938)
T ss_pred CcEEEEeceEEe-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhcC-CC------CCCCCcCHHHHHH
Confidence 5 6788888765 89999999998 689999888 99999999999876 22 3456788877766
No 106
>PLN02886 aminoacyl-tRNA ligase
Probab=96.84 E-value=0.009 Score=65.24 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=56.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.+||||.-.|+-+|..-.. +.+.++=|=|- |++ ...+....+..++-.+||+++... -|.
T Consensus 54 qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~-~lr~~~~~~~a~~lA~GlDP~ks~-------if~ 124 (389)
T PLN02886 54 QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPR-ELGKATRSTAAIYLACGIDPSKAS-------VFV 124 (389)
T ss_pred CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHH-HHHHHHHHHHHHHHHcCcCccceE-------EEE
Confidence 89999999999999999976654 54443333332 222 233444556778888899998654 389
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHH
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLN 181 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~ 181 (605)
||+--+ +.+.+=. +.|.++-.+|+
T Consensus 125 QS~v~e-~~eL~wi-------l~~~t~~g~L~ 148 (389)
T PLN02886 125 QSHVPA-HAELMWL-------LSCSTPIGWLN 148 (389)
T ss_pred eCCCch-hHHHHHH-------HHhhCcHHHHH
Confidence 997544 3333322 34777766664
No 107
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0098 Score=70.36 Aligned_cols=126 Identities=23% Similarity=0.303 Sum_probs=89.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC-----------------------CC---------cHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT-----------------------RF---------VPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~-----------------------R~---------~~~~~ 121 (605)
|.+||.||+|||.+.-+-..++|.+ .|.=+|=+-.||.. |+ .+++.
T Consensus 42 PNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~ 121 (877)
T COG0525 42 PNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESG 121 (877)
T ss_pred CCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Confidence 3899999999999999988999864 58777766666642 21 46888
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCc
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~ 199 (605)
..|.+.|+.||+..|=.-. |+.. ++...-++..-+|.++|..|+.. ..-..+-.
T Consensus 122 ~~I~~Q~~rLG~S~DWsrE-------~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~-----------------~lVNWcP~ 177 (877)
T COG0525 122 GTIREQLRRLGVSVDWSRE-------RFTMDPGLSRAVQEAFVRLYEKGLIYRGE-----------------RLVNWCPK 177 (877)
T ss_pred HHHHHHHHHhCCCcccccc-------cccCCHHHHHHHHHHHHHHHHCCceeecC-----------------CcccCCCc
Confidence 8999999999986553311 2222 34456678888999999999731 11234455
Q ss_pred Cc-CCCHHHHHHHHhcCCCceEEEEcC
Q psy16872 200 CR-NLTQEQIDEKLKENSKYCIRFKLT 225 (605)
Q Consensus 200 cr-~ls~~e~~~~~~~g~~~~iR~k~~ 225 (605)
|+ .+|..|++.+..+|.-+-||+.+-
T Consensus 178 ~~TAiSd~EVe~~e~~g~L~~i~y~l~ 204 (877)
T COG0525 178 CRTAISDIEVEYKEVEGKLYYIKYPLA 204 (877)
T ss_pred cccchhhhhhccceeeeeEEEEEEecC
Confidence 65 478888877777776667776654
No 108
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=96.61 E-value=0.0032 Score=72.64 Aligned_cols=125 Identities=18% Similarity=0.287 Sum_probs=76.4
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC--------------------------CC-------CCcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD--------------------------QT-------RFVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD--------------------------~~-------R~~~~~ 120 (605)
|++||.||+||+++..+-..+||.+ .|.-++.+=..| .+ ..+.++
T Consensus 32 Py~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (601)
T PF00133_consen 32 PYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAEEF 111 (601)
T ss_dssp -BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhhhh
Confidence 5999999999999999999999964 576665322222 11 124577
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCC
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y 196 (605)
.+.+.++++.||+ +|+.. |... ++.+.-.....+|.++|..|+-.. +-.|
T Consensus 112 ~~~~~~~~~~lG~~~Dw~~~---------y~T~d~~y~~~v~~~F~~l~~kglIyr~~~-----------------pv~w 165 (601)
T PF00133_consen 112 IEEQKEQFKRLGVSIDWDRE---------YFTMDPEYEKFVWWQFKKLYEKGLIYRGKK-----------------PVNW 165 (601)
T ss_dssp HHHHHHHHHHTT--SECTCE---------EETTSHHHHHHHHHHHHHHHHTTSEEEEEE-----------------EEEE
T ss_pred hhhhhhhhhheeeecccCCc---------eEECCccHhHHHHHHHHHHHhcCcEEeeCC-----------------CCCc
Confidence 8889999999996 66653 3332 233444566679999999997311 1123
Q ss_pred CCcCc-CCCHHHHHHHHhcCCCceEEEEcCC
Q psy16872 197 DNKCR-NLTQEQIDEKLKENSKYCIRFKLTN 226 (605)
Q Consensus 197 ~~~cr-~ls~~e~~~~~~~g~~~~iR~k~~~ 226 (605)
+-.|+ .++..|++.+...+....|+|++.+
T Consensus 166 ~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~ 196 (601)
T PF00133_consen 166 CPSCQTALSDHEVEYKEVKSPSIYVKFPLKD 196 (601)
T ss_dssp ETTTTEEE-GGGEEEEEEEEEEEEEEEEESS
T ss_pred CcccccchhhhhcccccccCceEEEEEEecC
Confidence 33343 2555555322233444567887753
No 109
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=96.32 E-value=0.05 Score=63.50 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=52.8
Q ss_pred cccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecCC-C-ccccccCC--CCChHHHHH
Q psy16872 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNLN-G-SKLSKRQG--DMSVEAIRN 332 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~d-g-~KLSKR~g--~~sv~~~r~ 332 (605)
..+|=.--+.|-...+.++|.-|.|...---.-.-+.+.+|.. .|...|.|++.+.+ | +||||+.+ .+.+.+
T Consensus 160 ll~YPvLQAADIl~l~adivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D--- 236 (682)
T PTZ00348 160 QVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED--- 236 (682)
T ss_pred HHhhhHHHhhcccccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC---
Confidence 3334333444445667888999999642111111333567854 56667789988886 3 69999985 355543
Q ss_pred cCCCHHHHHHHHHHh
Q psy16872 333 SEFLPNALINFVTNF 347 (605)
Q Consensus 333 ~G~~PeAl~nfla~l 347 (605)
.|+.+..-+...
T Consensus 237 ---spe~I~kKI~kA 248 (682)
T PTZ00348 237 ---TEEDVARKIRQA 248 (682)
T ss_pred ---CHHHHHHHHHhC
Confidence 788888888753
No 110
>KOG4426|consensus
Probab=96.30 E-value=0.047 Score=59.66 Aligned_cols=122 Identities=26% Similarity=0.416 Sum_probs=72.7
Q ss_pred cEEEecCCcccchhhhhh----------hhhcCCcceEEcCCCCcccHHHHHHHHHH---cCCCC---CcEEEe--ccee
Q psy16872 250 PVIIKSDGFPTYHFANVV----------DDHHMNISHVLRGVEWQISTTKHILIYKA---FGWTP---PKFAHL--PLLL 311 (605)
Q Consensus 250 ~Vi~ksDG~PtY~fA~vV----------DD~~m~ITHVIRG~d~l~stpkqi~ly~a---lG~~~---P~f~H~--plil 311 (605)
..++||||-.||+=.... -||.--|+. -|.-.+- ..+|.| .||-- |..-|+ ++++
T Consensus 369 LtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD--~GQs~Hf-----~t~fkAar~~gwld~~~~RV~HvgFGlVL 441 (656)
T KOG4426|consen 369 LTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVD--SGQSQHF-----NTIFKAARKAGWLDPTYPRVEHVGFGLVL 441 (656)
T ss_pred eEEEecCCCcccccchHHHHHHHHHHhhcCeEEEEee--CchhHHH-----HHHHHHHHHcCccCCCccceeeeeeeeEE
Confidence 567899999999743321 133322222 2332221 234544 68854 556675 4799
Q ss_pred cCCCccccccCCCC-------------ChHHHHHcC----CCHHHHHHHHHHhcCCC---CCCCCC-CccccCCHHHHHH
Q psy16872 312 NLNGSKLSKRQGDM-------------SVEAIRNSE----FLPNALINFVTNFGGGF---HDHQRT-SKSQLFSMKDLVE 370 (605)
Q Consensus 312 ~~dg~KLSKR~g~~-------------sv~~~r~~G----~~PeAl~nfla~lG~~~---~~~~~~-~~~e~~s~eeli~ 370 (605)
+.||+|.-.|.|.+ +...+.++| ++||.+..--..+|+|- .+-..+ -++=+||++.|.+
T Consensus 442 GeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~ 521 (656)
T KOG4426|consen 442 GEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLE 521 (656)
T ss_pred ccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhh
Confidence 99999999999973 333444443 67887776655555321 000001 2345799999999
Q ss_pred Hhcccccc
Q psy16872 371 KVCNNATY 378 (605)
Q Consensus 371 ~~~~~~~~ 378 (605)
|-=|+|+|
T Consensus 522 DrGnTAvY 529 (656)
T KOG4426|consen 522 DRGNTAVY 529 (656)
T ss_pred ccCcceeh
Confidence 87788877
No 111
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.30 E-value=0.013 Score=71.06 Aligned_cols=88 Identities=20% Similarity=0.130 Sum_probs=58.6
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEecc---CC----------------------------C---------C
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIE---DT----------------------------D---------Q 113 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiE---DT----------------------------D---------~ 113 (605)
|+|||.||+||++|.+....+||-+ .|.=+|..= .| + +
T Consensus 34 Py~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~ 113 (938)
T TIGR00395 34 PYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDP 113 (938)
T ss_pred CCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCH
Confidence 5999999999999999999999864 465554311 11 1 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCC--CCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEee
Q psy16872 114 TRFVPEAVEKLEQDLKWIGVVPD--ESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 114 ~R~~~~~~~~I~~~L~wlGl~~D--e~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 172 (605)
.-.+..+...+.++|+.||+..| .. |...+ +...-+....+|.++|..|+
T Consensus 114 ~~~~~~~~~~~~~~~~~lG~s~DW~r~---------~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 114 EYIVEYFSREAESACKSMGYSIDWRRS---------FKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHHHHHHHHHHHhCceEECCCC---------ccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 11124556689999999998654 32 33222 22333556668999999996
No 112
>PLN02959 aminoacyl-tRNA ligase
Probab=96.16 E-value=0.013 Score=71.91 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=36.1
Q ss_pred EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 304 FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 304 f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
+...++++ .+|+||||+.|+ ++..++.+. |.++|+|.||+..+
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~k-yGADalRl~la~~~ 749 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIEE-FSADATRFALADAG 749 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHHH-hCchHHHHHHhhcC
Confidence 55556655 799999999998 688888887 99999999998765
No 113
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=95.58 E-value=0.18 Score=55.22 Aligned_cols=65 Identities=18% Similarity=0.098 Sum_probs=46.1
Q ss_pred ccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCC
Q psy16872 259 PTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323 (605)
Q Consensus 259 PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g 323 (605)
.+|-+--+.|=.....+.++-|.|...|--.=..|.+.++-..+.-...||+.+.+|.||||+.|
T Consensus 163 f~YpllQa~D~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~ 227 (377)
T TIGR00234 163 FIYPLLQAYDFVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGG 227 (377)
T ss_pred hhhHHHHHHHHHHHcCCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCC
Confidence 44545555555556666888999998766555566666664445557788888999999999965
No 114
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=95.31 E-value=0.051 Score=66.26 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=61.3
Q ss_pred CCcceEEcCCCCcccHHHHHHHHH---HcCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYK---AFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~---alG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.-.+.++=|.|++.. -.+.++.- .+|-.|+ ...-++++++.+|+|||||.|+ ++..++.++ |.++|+|.|++.
T Consensus 544 ~Pad~~~~G~Di~r~-Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls 621 (975)
T PRK06039 544 FPADFIVEGIDQTRG-WFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLS 621 (975)
T ss_pred CCceEEEechhhHhh-HHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHh
Confidence 334555567777643 23333322 2344443 3444577788999999999998 688888888 999999999998
Q ss_pred hcCCCCCCCCCCccccCCHHHHHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.+. ...+..||.+.+++
T Consensus 622 ~~~-------~~~D~~fs~~~~~~ 638 (975)
T PRK06039 622 SSA-------PWEDLRFSEDGVRE 638 (975)
T ss_pred CCC-------CCCCceechhHHHH
Confidence 772 13456788888554
No 115
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=95.24 E-value=0.058 Score=65.21 Aligned_cols=86 Identities=13% Similarity=0.222 Sum_probs=59.5
Q ss_pred CcceEEcCCCCcccHHHHHHHH---HHcCC---CCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHH
Q psy16872 273 NISHVLRGVEWQISTTKHILIY---KAFGW---TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFV 344 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly---~alG~---~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfl 344 (605)
-.+..+=|.|++.+ |.+.| .+..| +.| .+.++++++. +|+||||+.|+ ++..++.+. |.++|+|.||
T Consensus 530 P~D~~~~GkDii~~---Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L 604 (897)
T PRK12300 530 PVDWRHSGKDLIPN---HLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEE-YGADVVRLYL 604 (897)
T ss_pred CceEEEeeeccCcc---HHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHH-cChHHHHHHH
Confidence 34455668888754 33222 22233 235 5777888777 89999999998 688888887 9999999999
Q ss_pred HHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 345 TNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 345 a~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+..+ .. ..+..|+.+.+..
T Consensus 605 ~~~~-~~------~~D~~fs~~~v~~ 623 (897)
T PRK12300 605 TSSA-EL------LQDADWREKEVES 623 (897)
T ss_pred HhCC-CC------CCCCccCHHHHHH
Confidence 9876 22 3445677776554
No 116
>PLN02907 glutamate-tRNA ligase
Probab=95.19 E-value=0.045 Score=64.42 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=122.1
Q ss_pred ccHHHHHHHHHHHHHCCCEee-eCCCHHHHHHHHHHHH---hCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 152 KRLALYQKEVQTLLHNGSAYK-CFCSDSRLNLIRKDAV---KSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 152 er~~~Y~~~a~~Li~~G~AY~-Cfcs~e~l~~~r~~~~---~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
++-+.+..+.+.|-=-|.-+- .+-+.++++.+++.+. +.|. .|.+.| +.+++.+...+|.+...|=...+.
T Consensus 260 ~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~Li~~G~--aY~~~~---~~~~~~~~~~~~~~~~~R~~~~ee 334 (722)
T PLN02907 260 ESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGK--AYVDDT---PREQMRKERMDGIESKCRNNSVEE 334 (722)
T ss_pred CChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHHHHcCC--eeecCC---CHHHHHHHHhcCCCCCccCCCHHH
Confidence 445566666666665565431 2335566777665433 4444 465555 456654332234433334221111
Q ss_pred ------------ccceeccccceee--ecCCCCCCCcEEEecCCcccchhhhhhhh-hcCCcceEEcCCCCcccHHHHHH
Q psy16872 228 ------------TESWQDLVYGDIS--YNVFHNEGDPVIIKSDGFPTYHFANVVDD-HHMNISHVLRGVEWQISTTKHIL 292 (605)
Q Consensus 228 ------------~~~~~D~v~G~i~--~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD-~~m~ITHVIRG~d~l~stpkqi~ 292 (605)
.......++.++. ++ +....|+|+.|.||.|-.....-++- -.....||| +||+.... |+
T Consensus 335 ~~~~~~~m~~g~~~~~~~~lR~k~d~~~~-n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~v--dD~~~gIT-hv- 409 (722)
T PLN02907 335 NLRLWKEMIAGSERGLQCCVRGKLDMQDP-NKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPF--VDALEGVT-HA- 409 (722)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcccCCC-CCCcccCEEEEecCCcccccCCccceeeccCCceEE--EcccCCCc-eE-
Confidence 1123345566654 33 34568999999999876654433321 234566777 45543211 11
Q ss_pred HHHHcCC--CCCcE----EEecce--ecCCCccccccCCC---CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccc
Q psy16872 293 IYKAFGW--TPPKF----AHLPLL--LNLNGSKLSKRQGD---MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQ 361 (605)
Q Consensus 293 ly~alG~--~~P~f----~H~pli--l~~dg~KLSKR~g~---~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e 361 (605)
.+...| ..|.+ -++.+- .-.+-..|.--..- -.+..|++.|+.+ ||+. +.-+.-..
T Consensus 410 -lRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~----------Gwdd--pr~pt~~~ 476 (722)
T PLN02907 410 -LRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVE----------GWDD--PRFPTVQG 476 (722)
T ss_pred -eecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCccccccchHhHhhcCccc----------CCCC--CCcccHHH
Confidence 011111 11221 111110 00011122211111 2588999999987 8653 22122334
Q ss_pred c----CCHHHHHHHhcccccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHHHhhc
Q psy16872 362 L----FSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVM 429 (605)
Q Consensus 362 ~----~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~ 429 (605)
+ ++.+.+.+ -|....++++++.||.+||.|+|+++|....
T Consensus 477 ~rrrG~~~eai~~----------------------------f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a 520 (722)
T PLN02907 477 IVRRGLKIEALKQ----------------------------FILSQGASKNLNLMEWDKLWTINKKIIDPVC 520 (722)
T ss_pred HHHcCCCHHHHHH----------------------------HHHHhCCCcCCccccHHHHHHHHHHHhccCC
Confidence 5 77777777 8999999999999999999999999998653
No 117
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=95.13 E-value=0.061 Score=64.69 Aligned_cols=88 Identities=20% Similarity=0.186 Sum_probs=60.5
Q ss_pred CcceEEcCCCCcccHHHHHHHHHH---cCCCCCc-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKA---FGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~a---lG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
..+..+=|.|++.+ -.|..++.+ +|..||. ..-++++++.+|+||||+.|+ ++..++.+. |.++|+|.|++..
T Consensus 564 P~d~~i~G~Di~r~-Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~~ll~~ 641 (861)
T TIGR00392 564 PADFILEGSDQTRG-WFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASS 641 (861)
T ss_pred CceEEEEecchhcc-HHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHHHHHhC
Confidence 34455557777642 344444443 3655552 333466678899999999998 688888887 9999999999876
Q ss_pred cCCCCCCCCCCccccCCHHHHHH
Q psy16872 348 GGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 348 G~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.. ..+-.|+.+.+..
T Consensus 642 --~~------~~D~~fs~~~l~~ 656 (861)
T TIGR00392 642 --DP------WEDLRFSDEILKQ 656 (861)
T ss_pred --CC------CCCceECHHHHHH
Confidence 23 3556788887755
No 118
>PLN02882 aminoacyl-tRNA ligase
Probab=94.54 E-value=0.11 Score=64.30 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=58.8
Q ss_pred cceEEcCCCCcccHHHHHHHHH---HcCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 274 ISHVLRGVEWQISTTKHILIYK---AFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~---alG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
.+.++-|.|.+.. -.+-++.- .+|..+| ...+++++++.+|+||||+.|+ +...++.+. |.++|||.||+...
T Consensus 568 aD~i~eG~Dq~Rg-Wf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 568 ADFVAEGLDQTRG-WFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALRLYLINSP 645 (1159)
T ss_pred ceEEEEecchhhh-HHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHHHHHHhCC
Confidence 4445556666542 22222222 2366666 4677789999999999999998 577788776 89999999998654
Q ss_pred CCCCCCCCCCccccCCHHHHHH
Q psy16872 349 GGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 349 ~~~~~~~~~~~~e~~s~eeli~ 370 (605)
..+ ..+..|+.+.+.+
T Consensus 646 ~~~------~~d~~fs~~~v~~ 661 (1159)
T PLN02882 646 VVR------AEPLRFKEEGVFG 661 (1159)
T ss_pred ccc------CcCcccCHHHHHH
Confidence 222 2334577776554
No 119
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.51 E-value=0.11 Score=61.93 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=61.1
Q ss_pred CcceEEcCCCCcccHH--HHHHHHHHcCCCCC---cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 273 NISHVLRGVEWQISTT--KHILIYKAFGWTPP---KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 273 ~ITHVIRG~d~l~stp--kqi~ly~alG~~~P---~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-.+-.+-|-|-+. += +.+++--+|.-+.| .|.| +|+.+.+|+||||+.|+ +...++.++ |-.+|||.+++.
T Consensus 478 Pt~llvtG~DIIf-fWvarmi~~~~~~~~~~PFk~V~ih-GLVrDe~G~KMSKS~GNvIDP~d~I~~-yGaDAlRf~la~ 554 (877)
T COG0525 478 PTDLLVTGHDIIF-FWVARMIMRGLHLTGEVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDVIDK-YGADALRFTLAS 554 (877)
T ss_pred CCccccccchhhH-HHHHHHHHHHHHhcCCCCccEEEEe-eeEEcCCCCCCcccCCCcCCHHHHHHH-hChHHHHHHHHh
Confidence 3444456777663 22 22333334555677 3555 88899999999999998 577788887 899999999998
Q ss_pred hcCCCCCCCCCCccccCCHHHHHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++ +. +.+-.|+.+.+..
T Consensus 555 ~~-~~------G~Di~~~~~~~~~ 571 (877)
T COG0525 555 LA-SP------GRDINFDEKRVEG 571 (877)
T ss_pred cc-CC------CcccCcCHHHHHH
Confidence 86 22 4556677777664
No 120
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.29 E-value=0.15 Score=61.93 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=60.3
Q ss_pred CCcceEEcCCCCcccHHHHHHHHHH---cCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYKA---FGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~a---lG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.-.+-.+=|.|++. .-.|..++.+ .|-.|| ...-++++++.+|+||||+.|+ ++..++.+. |.++++|.|++.
T Consensus 544 ~P~Dl~~~G~Di~r-~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~ 621 (912)
T PRK05743 544 YPADLYLEGSDQHR-GWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAS 621 (912)
T ss_pred CCceEEEecccccc-hHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHh
Confidence 33444556888873 2334444443 355555 3444578899999999999998 578888876 999999999986
Q ss_pred hcCCCCCCCCCCccccCCHHHHHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .+ ..+-.||.+.+..
T Consensus 622 -~-~~------~~D~~~s~~~l~~ 637 (912)
T PRK05743 622 -T-DY------SGDVRISDEILKQ 637 (912)
T ss_pred -c-CC------CCCeeecHHHHHH
Confidence 4 23 3455677666543
No 121
>PLN02843 isoleucyl-tRNA synthetase
Probab=93.66 E-value=0.2 Score=61.13 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=55.6
Q ss_pred EEcCCCCcccHHHHHHHHH---HcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHc--------CCCHHHHHH
Q psy16872 277 VLRGVEWQISTTKHILIYK---AFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNS--------EFLPNALIN 342 (605)
Q Consensus 277 VIRG~d~l~stpkqi~ly~---alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~--------G~~PeAl~n 342 (605)
.+=|.|.+. .-.|-.++. +.|-.|+ .+.| +++++.+|+||||+.|+ ++..++.+. -|.++++|.
T Consensus 568 ~~eG~Di~r-gWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~ 645 (974)
T PLN02843 568 YLEGSDQHR-GWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRL 645 (974)
T ss_pred eeeeccccc-hHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHH
Confidence 345777763 234444443 2354343 3566 88899999999999998 578888873 399999999
Q ss_pred HHHHhcCCCCCCCCCCccccCCHHHHH
Q psy16872 343 FVTNFGGGFHDHQRTSKSQLFSMKDLV 369 (605)
Q Consensus 343 fla~lG~~~~~~~~~~~~e~~s~eeli 369 (605)
|++... + ..+..|+.+.+.
T Consensus 646 ~l~~~~--~------~~d~~~s~~~l~ 664 (974)
T PLN02843 646 WVASVD--Y------TGDVLIGPQILK 664 (974)
T ss_pred HHHhcc--c------CCCceeCHHHHH
Confidence 998633 3 234567766554
No 122
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=93.62 E-value=0.15 Score=58.98 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=52.1
Q ss_pred CCcceEEcCCCCcccHHHHHHHH--HHcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVLRGVEWQISTTKHILIY--KAFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly--~alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.-++-.+-|.|++.+= .+..++ -++--+.| ....++++++.+|+||||+.|+ ++..++.++ |..+|+|-|++.
T Consensus 513 ~P~D~~~~G~D~~~~W-~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~ 590 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGW-FQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLAS 590 (601)
T ss_dssp SSBSEEEEEGGGTTTH-HHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHH
T ss_pred CCcccccCCccchhhH-HHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHh
Confidence 5677778888988652 222333 23332333 5667789999999999999998 588999998 999999999997
Q ss_pred hc
Q psy16872 347 FG 348 (605)
Q Consensus 347 lG 348 (605)
.+
T Consensus 591 ~~ 592 (601)
T PF00133_consen 591 SA 592 (601)
T ss_dssp HS
T ss_pred cC
Confidence 66
No 123
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=93.38 E-value=0.25 Score=60.22 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=57.5
Q ss_pred eEEcCCCCcccHHHHHHHHHHcC---CCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcC
Q psy16872 276 HVLRGVEWQISTTKHILIYKAFG---WTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGG 349 (605)
Q Consensus 276 HVIRG~d~l~stpkqi~ly~alG---~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~ 349 (605)
..+=|.|.+. .-.|..+..+++ -.|| .+.| +++++.+|+||||+.|+ ++..++.+. |.++++|.|++. +
T Consensus 586 ~~~eG~Di~r-gWF~s~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~-yGaD~lRl~lls-~- 660 (961)
T PRK13804 586 LYLEGSDQHR-GWFNSSLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILRLWVAS-V- 660 (961)
T ss_pred EEEEEccccc-HHHHHHHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHh-cCHHHHHHHHHh-C-
Confidence 3445777763 234444555543 3344 3566 78899999999999998 577888876 999999999986 3
Q ss_pred CCCCCCCCCccccCCHHHHHH
Q psy16872 350 GFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 350 ~~~~~~~~~~~e~~s~eeli~ 370 (605)
.+ ..+-.||.+.|..
T Consensus 661 ~~------~~D~~fs~~~l~~ 675 (961)
T PRK13804 661 DY------SDDQRIGKEILKQ 675 (961)
T ss_pred CC------CCCcccCHHHHHH
Confidence 23 3455678776543
No 124
>PLN02943 aminoacyl-tRNA ligase
Probab=93.31 E-value=0.2 Score=61.13 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=45.3
Q ss_pred EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 304 FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 304 f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.| +++++.+|+||||+.|+ ++..++.+. |.|+|+|.|++..+ . ..+..||.+.+..
T Consensus 571 ~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l~~~~--~------~~d~~fs~~~l~~ 628 (958)
T PLN02943 571 YLH-GLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALRFTLALGT--A------GQDLNLSTERLTS 628 (958)
T ss_pred EEe-ccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHHHHHHhCC--C------CCCccccHHHHHH
Confidence 455 56688999999999998 688899887 99999999998743 2 3455688887655
No 125
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=93.04 E-value=0.25 Score=60.86 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=45.6
Q ss_pred EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 304 FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 304 f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
..-++++++.+|+||||+.|+ ++..++.+. |.++++|.||+..+ +. ..+..||.+.+..
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR~~L~~~~-~~------g~D~~fs~~~l~~ 584 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALRFTLAALT-AQ------GRDIKLAKERIEG 584 (1052)
T ss_pred eEecccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHHHHHHhcC-CC------CCCCcccHHHHHH
Confidence 444578889999999999998 688888877 99999999999865 22 3445678766533
No 126
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.79 E-value=0.099 Score=62.03 Aligned_cols=75 Identities=20% Similarity=0.394 Sum_probs=52.3
Q ss_pred hcCCcceEEcCCCCcccHHHHHHHHH----Hc---C-CCC--C--cEEEecceecCCCccccccCCC-CChHHHHHcCCC
Q psy16872 270 HHMNISHVLRGVEWQISTTKHILIYK----AF---G-WTP--P--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFL 336 (605)
Q Consensus 270 ~~m~ITHVIRG~d~l~stpkqi~ly~----al---G-~~~--P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~ 336 (605)
+-|-|.-=|-|.||.. -|++.+. || | |+. | .-..-+|++..+|+||||++|+ ++.++..++ |-
T Consensus 523 yW~PVD~yigG~ehav---lHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-yG 598 (814)
T COG0495 523 YWYPVDLYIGGIEHAV---LHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-YG 598 (814)
T ss_pred cccChheeecchhHHH---HHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-hC
Confidence 3455555566666663 3543332 22 2 442 3 1344556777789999999998 689999988 99
Q ss_pred HHHHHHHHHHhc
Q psy16872 337 PNALINFVTNFG 348 (605)
Q Consensus 337 PeAl~nfla~lG 348 (605)
++++|-|++..|
T Consensus 599 ADt~Rl~~m~~a 610 (814)
T COG0495 599 ADTVRLYIMFAA 610 (814)
T ss_pred chHHHHHHHhhC
Confidence 999999999998
No 127
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.53 E-value=0.48 Score=57.10 Aligned_cols=124 Identities=16% Similarity=0.300 Sum_probs=79.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEE--------------------ec-----cCCCCC-------CCcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFIL--------------------RI-----EDTDQT-------RFVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiL--------------------Ri-----EDTD~~-------R~~~~~~ 121 (605)
|++||.+|||||.+=++-..+.|.+ .|--+- .+ ++...+ ....+++
T Consensus 58 PyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v 137 (933)
T COG0060 58 PYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQV 137 (933)
T ss_pred CCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHH
Confidence 5999999999999999998888864 354332 21 222111 1245788
Q ss_pred HHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCC
Q psy16872 122 EKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYD 197 (605)
Q Consensus 122 ~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~ 197 (605)
+...++++.||+ +||. ||..- +..+.--....+|.++|+.|+-+ ++--|.
T Consensus 138 ~~q~~~f~RLGv~~Dw~n---------pY~Tmd~~ye~~~~~~f~~~~~kGllyrg~-----------------Kpv~ws 191 (933)
T COG0060 138 DEQKEQFKRLGVWGDWEN---------PYKTMDPSYEESVWWAFKELYEKGLLYRGY-----------------KPVPWS 191 (933)
T ss_pred HHHHHHHHhheEeeccCC---------CeecCCHHHHHHHHHHHHHHHHCCCeecCC-----------------eeeeec
Confidence 888999999997 6765 45433 34444456778999999999631 111233
Q ss_pred CcCcC-CCHHHHHHHHhcCCCceEEEEcC
Q psy16872 198 NKCRN-LTQEQIDEKLKENSKYCIRFKLT 225 (605)
Q Consensus 198 ~~cr~-ls~~e~~~~~~~g~~~~iR~k~~ 225 (605)
-.|+. |+..|++-.-.....-.|+|++.
T Consensus 192 p~c~TaLAeaEvey~d~~dpSIyV~F~v~ 220 (933)
T COG0060 192 PRCETALAEAEVEYGDVKDPSIYVKFPVK 220 (933)
T ss_pred CCCCcchhhhhhcccccCCceEEEEEEec
Confidence 44643 77777653323333446777774
No 128
>KOG0432|consensus
Probab=90.99 E-value=0.73 Score=54.58 Aligned_cols=90 Identities=22% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCCC------------------------C---------cHHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQTR------------------------F---------VPEAV 121 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~R------------------------~---------~~~~~ 121 (605)
-.||.||||||-|.-.-...||.+ .|.-+|=+-.||..= + .+++-
T Consensus 85 NVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g 164 (995)
T KOG0432|consen 85 NVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYG 164 (995)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhC
Confidence 567999999999999999999975 588888888887531 0 24666
Q ss_pred HHHHHHHHHcCC--CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeee
Q psy16872 122 EKLEQDLKWIGV--VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKC 173 (605)
Q Consensus 122 ~~I~~~L~wlGl--~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C 173 (605)
..|.+.|+.||- +||..-... ..++-..-.++...|-++|..|+.
T Consensus 165 ~~I~~Qlk~lGas~DW~re~fTm-------D~~~s~AV~eAFvrL~eeglIyR~ 211 (995)
T KOG0432|consen 165 GRIYNQLKRLGASLDWDREAFTM-------DPKLSRAVTEAFVRLHEEGLIYRA 211 (995)
T ss_pred ccHHHHHHHhcCcccccHhhccc-------CHHHHHHHHHHHHHHHhcCceEec
Confidence 789999999996 566542111 123344567788899999999983
No 129
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=90.58 E-value=0.27 Score=56.60 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=116.7
Q ss_pred ccHHHHHHHHHHHHHCCCEe---eeCCCHHHHHHHHHHHH---hCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcC
Q psy16872 152 KRLALYQKEVQTLLHNGSAY---KCFCSDSRLNLIRKDAV---KSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLT 225 (605)
Q Consensus 152 er~~~Y~~~a~~Li~~G~AY---~Cfcs~e~l~~~r~~~~---~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~ 225 (605)
++-+.+..+.+.|---|.-+ +.+ ..++++.+++.+. +.|. .|.+.| +.+|+.+....|.+..-|=+.+
T Consensus 99 ~~~e~~d~IleDL~WLGl~wDe~~~~-QSdr~d~y~e~a~~Li~~G~--AY~c~c---s~eei~~~r~~g~p~~~R~~s~ 172 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVSWDVGPTY-SSDYMDLMYEKAEELIKKGL--AYCDKT---PREEMQKCRFDGVPTKYRDISV 172 (601)
T ss_pred cCHHHHHHHHHHHHHCCCCCCCceee-ccccHHHHHHHHHHHHHcCC--EEEecC---CHHHHHHHHhCCCCCCCCCCCH
Confidence 45566667777776666644 123 4456777665433 3343 574444 5666654333455443342211
Q ss_pred CCc------------cceeccccceeeecC-CCCCCCcEEEecCCcccchhhhhhh-hhcCCcceEEcCCCCcccHHHHH
Q psy16872 226 NHT------------ESWQDLVYGDISYNV-FHNEGDPVIIKSDGFPTYHFANVVD-DHHMNISHVLRGVEWQISTTKHI 291 (605)
Q Consensus 226 ~~~------------~~~~D~v~G~i~~~~-~~~~~D~Vi~ksDG~PtY~fA~vVD-D~~m~ITHVIRG~d~l~stpkqi 291 (605)
+.+ ..-.+.+++++.... +...+|+|+.|.+..|...--.-=| --.....||| +||+.... |+
T Consensus 173 ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vV--DD~l~gIT-Hv 249 (601)
T PTZ00402 173 EETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPI--IDSVEGVT-HA 249 (601)
T ss_pred HHHHHHHHhccccccCCCceEEEEecccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceee--EccccCCc-eE
Confidence 110 011356677765442 3457899999988766443111000 1224455666 34443211 10
Q ss_pred HHHHHcCCC--CCc----EEEecceecCCCcccc--ccCCC----CChHHHHHcCCC--------HHHHHHHHHHhcCCC
Q psy16872 292 LIYKAFGWT--PPK----FAHLPLLLNLNGSKLS--KRQGD----MSVEAIRNSEFL--------PNALINFVTNFGGGF 351 (605)
Q Consensus 292 ~ly~alG~~--~P~----f~H~plil~~dg~KLS--KR~g~----~sv~~~r~~G~~--------PeAl~nfla~lG~~~ 351 (605)
.....|. .|. +-++.+ --+.---+| .-.|. -.+..+.+.|+. |. +++|.+.
T Consensus 250 --lRg~E~l~~tp~q~~L~~aLg~-~~P~~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpT--i~glrRr---- 320 (601)
T PTZ00402 250 --LRTNEYHDRNDQYYWFCDALGI-RKPIVEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPT--VRALVRR---- 320 (601)
T ss_pred --eechhhhhCcHHHHHHHHHhCC-CCceEEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHh--HHHHHHc----
Confidence 1111111 122 111111 001111122 11121 146778888773 22 3333333
Q ss_pred CCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHHHhhc
Q psy16872 352 HDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVM 429 (605)
Q Consensus 352 ~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~ 429 (605)
.++.+++.+ .|+...++++++.||.+||.|+|++||....
T Consensus 321 ----------G~~peai~~----------------------------f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a 360 (601)
T PTZ00402 321 ----------GLKMEALRQ----------------------------FVQEQGMSKTVNFMEWSKLWYFNTQILDPSV 360 (601)
T ss_pred ----------CCCHHHHHH----------------------------HHHHhCCCCCCcccCHHHHHHHHHHHHhhcC
Confidence 357788888 9999999999999999999999999999753
No 130
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=89.96 E-value=0.78 Score=57.20 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=54.9
Q ss_pred cceEEcCCCCcccHHHHHHHHH--HcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 274 ISHVLRGVEWQISTTKHILIYK--AFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~--alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
.+-++-|-|.+.. -.+.+++. ++-=+.| ...=++++++.+|+||||+.|+ +.-.++.+. |-++|||.||+..+
T Consensus 674 aD~i~eG~Dq~rg-Wf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~ 751 (1205)
T PTZ00427 674 ADFIAEGLDQTRG-WFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSV 751 (1205)
T ss_pred ceEEEEecchhcc-HHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcC
Confidence 4455566666532 23333332 2222345 2333478899999999999998 466667766 88999999998765
Q ss_pred CCCCCCCCCCccccCCHHHH
Q psy16872 349 GGFHDHQRTSKSQLFSMKDL 368 (605)
Q Consensus 349 ~~~~~~~~~~~~e~~s~eel 368 (605)
. . ...+-.|+.+.+
T Consensus 752 ~-~-----~~~Dl~Fse~~v 765 (1205)
T PTZ00427 752 A-V-----RAENLKFQEKGV 765 (1205)
T ss_pred C-C-----CCcccccCHHHH
Confidence 1 1 123446776654
No 131
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=89.78 E-value=0.55 Score=56.56 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=59.9
Q ss_pred cCCcceEEcCCCCccc-----HHHHHHHHHHcC-C--CCC--cEEEecceec----CCCc--------------------
Q psy16872 271 HMNISHVLRGVEWQIS-----TTKHILIYKAFG-W--TPP--KFAHLPLLLN----LNGS-------------------- 316 (605)
Q Consensus 271 ~m~ITHVIRG~d~l~s-----tpkqi~ly~alG-~--~~P--~f~H~plil~----~dg~-------------------- 316 (605)
.|-++..+-|.||... .--|..|+.. | + ..| .....+|+++ .+|+
T Consensus 518 ~~PvD~yi~G~dhailHLlyaRf~~~~l~~~-~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 596 (842)
T TIGR00396 518 WLPVDLYIGGAEHAILHLLYARFWHKFLYDI-GYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGE 596 (842)
T ss_pred cCCCcEeeccHHHHHHHHHHHHHHHHHHHhc-cccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCc
Confidence 3556666667776422 1233334432 2 2 345 3455678888 8888
Q ss_pred -------cccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 317 -------KLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 317 -------KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||||+.|+ +++.++.++ |.++|+|-|++..+ .+ ..+-.++.+.+..
T Consensus 597 ~~~~~~~KMSKS~GN~v~p~~ii~~-ygaDalRl~~l~~~-~~------~~d~~~~~~~l~~ 650 (842)
T TIGR00396 597 LVVVGYEKMSKSKGNGIDPQEIVKK-HGADALRLYIMFMG-PI------AASLEWNDSGLEG 650 (842)
T ss_pred ccccchhhhhhcCCCcCCHHHHHHH-cCchHHHHHHHhcC-Cc------CCCCccCHHHHHH
Confidence 99999998 688999888 99999999998765 22 3344577666543
No 132
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=89.60 E-value=0.83 Score=55.46 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=55.4
Q ss_pred CChhhHHHHHHHHHHHHHc--CCeEEEeccCCC----CC------------------------------------CCcHH
Q psy16872 82 LHLGGLRTALYNYLFAKSH--NGSFILRIEDTD----QT------------------------------------RFVPE 119 (605)
Q Consensus 82 LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD----~~------------------------------------R~~~~ 119 (605)
||+||+++...-..+||.+ .|.-+|+.=..| |. -.+..
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999965 688777643333 10 01123
Q ss_pred HHHHHHHHHHHcCC--CCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEee
Q psy16872 120 AVEKLEQDLKWIGV--VPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 120 ~~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.+.+.++++.||+ +|+.. |...+ +...-+....+|.++|++|+
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~---------y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRRE---------FTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCC---------eECCChhHHHHHHHHHHHHHHCCCEec
Confidence 44778999999997 45543 33333 22233455668999999996
No 133
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=88.83 E-value=0.82 Score=56.10 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=47.8
Q ss_pred CcceEEcCCCCcccHHHHHHHHHHcCC--CCC--cEEEecceecCCCccccccCCC-CChHHHHHc--------------
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKAFGW--TPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNS-------------- 333 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~alG~--~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~-------------- 333 (605)
-.+-.+=|-|.+- .-.+.++.-.++. +.| ....++++++.+|+||||+.|+ +...++.+.
T Consensus 538 P~d~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~ 616 (995)
T PTZ00419 538 PTSLLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGN 616 (995)
T ss_pred CCcEEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccc
Confidence 3454555666542 2222222222222 466 3556688999999999999998 444455441
Q ss_pred ----------------------CCCHHHHHHHHHHhc
Q psy16872 334 ----------------------EFLPNALINFVTNFG 348 (605)
Q Consensus 334 ----------------------G~~PeAl~nfla~lG 348 (605)
-|..+|+|.|++..+
T Consensus 617 ~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~ 653 (995)
T PTZ00419 617 LPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYT 653 (995)
T ss_pred cchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcC
Confidence 388999999999866
No 134
>PLN02959 aminoacyl-tRNA ligase
Probab=88.14 E-value=1.3 Score=54.92 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=26.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEE
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFIL 106 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiL 106 (605)
|++||.|||||++|...-..+||-+ .|.-+|
T Consensus 54 PY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vl 86 (1084)
T PLN02959 54 PYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVL 86 (1084)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHcCCCccC
Confidence 5999999999999999999999864 465554
No 135
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=87.87 E-value=1.1 Score=53.81 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=57.4
Q ss_pred CCcceEEcCCCCccc-----HHHHHHHHHHcC-C--CCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHH
Q psy16872 272 MNISHVLRGVEWQIS-----TTKHILIYKAFG-W--TPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNAL 340 (605)
Q Consensus 272 m~ITHVIRG~d~l~s-----tpkqi~ly~alG-~--~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl 340 (605)
+-++..+-|.||..+ .--|..|+. .| + ..| ...|.+++ ||||+.|+ +++.++.++ |.++++
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~-~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~-ygaD~l 593 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLRD-LGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEK-YGADTA 593 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHHH-hhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHH-cChHHH
Confidence 567777888887644 222323322 23 2 245 57888886 99999998 688898887 999999
Q ss_pred HHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 341 INFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 341 ~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|-|++..| .+ ..+-.||.+.+..
T Consensus 594 Rl~l~~~~-~~------~~d~~~s~~~l~~ 616 (805)
T PRK00390 594 RLFEMFAG-PP------EKDLEWSDSGVEG 616 (805)
T ss_pred HHHHHhcC-Cc------cCCcccCHHHHHH
Confidence 99998876 23 3345577666544
No 136
>PLN02381 valyl-tRNA synthetase
Probab=86.28 E-value=1.8 Score=53.47 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=49.1
Q ss_pred CCcceEEcCCCCcccHHHHHHHHHH--cCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHc-------------
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYKA--FGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNS------------- 333 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~a--lG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~------------- 333 (605)
.-.+..+-|-|.+-- -.+.++.-. +.-+.| ...-++|+++.+|+||||+.|+ +...++.+.
T Consensus 607 ~P~d~~~~G~Dii~~-W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~ 685 (1066)
T PLN02381 607 YPTSVLETGHDILFF-WVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 685 (1066)
T ss_pred CCCeeeeecchhhhh-HHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhcc
Confidence 445666667776632 222222222 333456 2334489999999999999998 455555541
Q ss_pred -----------------------CCCHHHHHHHHHHhc
Q psy16872 334 -----------------------EFLPNALINFVTNFG 348 (605)
Q Consensus 334 -----------------------G~~PeAl~nfla~lG 348 (605)
-|-++|||.|++..+
T Consensus 686 ~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~ 723 (1066)
T PLN02381 686 NLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYT 723 (1066)
T ss_pred ccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCC
Confidence 278999999999876
No 137
>PLN02563 aminoacyl-tRNA ligase
Probab=82.37 E-value=2.3 Score=51.97 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=28.1
Q ss_pred cccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 317 KLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 317 KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
||||++|+ +...++.+. |-++++|-|++..+
T Consensus 723 KMSKSKGNvVdP~eiI~k-YGADaLRl~ll~~a 754 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSE-YGADSLRLYEMFMG 754 (963)
T ss_pred ccccccCCcCCHHHHHHH-cCcHHHHHHHHhCC
Confidence 99999998 688888887 99999999999876
No 138
>KOG0433|consensus
Probab=76.30 E-value=17 Score=43.02 Aligned_cols=119 Identities=24% Similarity=0.296 Sum_probs=71.0
Q ss_pred cchhhhhhhhhhhhhhhcCcccCCCCceeEec-CCCCcCChhhHHHHHHHH-----HHHHHcCCeEEE-------eccCC
Q psy16872 45 VGRIFMIYNRCEKLWITEGLRSSIPLKLKHFL-TSTGLLHLGGLRTALYNY-----LFAKSHNGSFIL-------RIEDT 111 (605)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~fp-~PtG~LHiG~~RtAL~n~-----l~Ar~~~G~fiL-------RiEDT 111 (605)
.||+=.+.+.+....+..+-- ..+.++.+-. ..+|.||+|||+.-+.-. ..|...+.-|++ =||-|
T Consensus 33 ~gr~~q~~evi~~~~~~~~ql-s~~q~~~f~L~danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~ 111 (937)
T KOG0433|consen 33 TGRIGQVIEVIQPPEILSSQL-SDQQRVEFELKDANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIEST 111 (937)
T ss_pred ccchHHHHHHhCChHHHHHHH-hhccCceEEEeccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHH
Confidence 788888777775544443221 2234445554 799999999999877644 344333334433 23321
Q ss_pred C-------C--CCC-----------cHHHHHHHHHHHHHcCC--CCCCCccCCCccCccc--ccccHHHHHHHHHHHHHC
Q psy16872 112 D-------Q--TRF-----------VPEAVEKLEQDLKWIGV--VPDESETVGGNYGPYL--QSKRLALYQKEVQTLLHN 167 (605)
Q Consensus 112 D-------~--~R~-----------~~~~~~~I~~~L~wlGl--~~De~p~~~g~~gpy~--QSer~~~Y~~~a~~Li~~ 167 (605)
- . +|+ ..++++..++.++..|+ +|.. ||. +.++..--.+...+|.++
T Consensus 112 kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n---------~Y~T~~~~ye~aQL~iF~~lyek 182 (937)
T KOG0433|consen 112 KALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWEN---------PYVTKSPSYEAAQLDIFAKLYEK 182 (937)
T ss_pred HHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCC---------ceeecChHHHHHHHHHHHHHHhc
Confidence 0 0 111 25788888899999999 4542 343 223333334556689999
Q ss_pred CCEeee
Q psy16872 168 GSAYKC 173 (605)
Q Consensus 168 G~AY~C 173 (605)
|..|+-
T Consensus 183 gLvyR~ 188 (937)
T KOG0433|consen 183 GLVYRS 188 (937)
T ss_pred cceecc
Confidence 999974
No 139
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=76.18 E-value=1.3 Score=53.62 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=42.1
Q ss_pred EEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHH
Q psy16872 305 AHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKD 367 (605)
Q Consensus 305 ~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~ee 367 (605)
.-++++++.+|+||||+.|+ ++-.+..++ |-.++||-|++..- + .++..+|.+.
T Consensus 590 ltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~ssd--~------~~dl~~s~~i 644 (933)
T COG0060 590 LTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASSD--Y------WEDLRFSDEI 644 (933)
T ss_pred hhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeeecC--c------hhccccCHHH
Confidence 34578899999999999998 577788877 88999999997754 2 3455666666
No 140
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=72.77 E-value=8.2 Score=33.99 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=26.5
Q ss_pred Eec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCC
Q psy16872 74 HFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTR 115 (605)
Q Consensus 74 ~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R 115 (605)
.|+ ++ |++|+||+..+-. |+....+.++.|.|..+..
T Consensus 3 ~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 3 RFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCccc
Confidence 455 56 9999999997433 3344478999999877654
No 141
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.31 E-value=3.4 Score=45.68 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=44.8
Q ss_pred hhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC
Q psy16872 263 FANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD 324 (605)
Q Consensus 263 fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~ 324 (605)
+--+-|-...+..-=+-|.|...|--.=+-+.+.+|..+|.-.|.|||.+.+|+||||+.|.
T Consensus 170 LmQayD~~~L~~dlq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 170 LLQAYDFVYLNKDLQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred HHHHHHHHHHccchhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcccccCCC
Confidence 33333333333333367888777655556677889998788899999999999999999875
No 142
>KOG0437|consensus
Probab=70.28 E-value=6.5 Score=46.27 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=42.1
Q ss_pred cCCCCcCChhhHHHHH---HHHHHHHHcCCeEEE---eccCCCCCCCcHHHHHHHHHHHHHcCCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTAL---YNYLFAKSHNGSFIL---RIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL---~n~l~Ar~~~G~fiL---RiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~ 138 (605)
|+-||.|||||+.|.- |.-.|-|- +|+-+| -+-.|. --.....+.+.+.++.+|-.+|-.
T Consensus 53 PYMNG~LHlGH~FslSK~eFa~~y~rL-~Gk~vLfPfgFHCTG--MPI~A~AdKLkrEie~fG~ppdf~ 118 (1080)
T KOG0437|consen 53 PYMNGRLHLGHAFSLSKVEFASGYERL-QGKNVLFPFGFHCTG--MPIKASADKLKREIELFGCPPDFP 118 (1080)
T ss_pred cccCceeeccceeehhhhHHHHHHHHh-cCceEEeecccccCC--CccHHhHHHHHHHHHHhCCCCCCc
Confidence 5778999999999764 33344444 444433 455554 456678889999999999998854
No 143
>KOG2713|consensus
Probab=59.37 E-value=15 Score=38.82 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=46.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc---CCeEEEeccCCCC---CCCcHHHHHHH---HHHHHHcCCCCCCCccCCCccC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH---NGSFILRIEDTDQ---TRFVPEAVEKL---EQDLKWIGVVPDESETVGGNYG 146 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~---~G~fiLRiEDTD~---~R~~~~~~~~I---~~~L~wlGl~~De~p~~~g~~g 146 (605)
..|||-+||||--.|+=+|.--... |-..++-|-|.-. .-.....-+.+ ...|-.+||++....
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~------- 92 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS------- 92 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce-------
Confidence 3899999999999999999754432 3346666666521 11122344444 445566799998764
Q ss_pred ccccccc
Q psy16872 147 PYLQSKR 153 (605)
Q Consensus 147 py~QSer 153 (605)
-++||+=
T Consensus 93 lF~QS~V 99 (347)
T KOG2713|consen 93 LFVQSDV 99 (347)
T ss_pred eeeeccc
Confidence 4789953
No 144
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=53.32 E-value=40 Score=28.02 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHH
Q psy16872 533 RDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLR 588 (605)
Q Consensus 533 ~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~ 588 (605)
.+++.+.|++++++.+.....+.+-+-=.+.--..|..+.+-+.++--..+++||+
T Consensus 3 ~~~~~e~i~~iA~~t~~P~e~V~~my~dt~~~l~~~ARV~DYl~lfaaRrVre~lR 58 (66)
T PF12085_consen 3 QDNVDEVIRSIAEETGTPAETVRRMYDDTMRELSSGARVHDYLPLFAARRVRERLR 58 (66)
T ss_pred cccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHh
Confidence 36788899999999999999999998888888899999999999999888888887
No 145
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=52.72 E-value=9.7 Score=43.80 Aligned_cols=11 Identities=45% Similarity=0.975 Sum_probs=10.7
Q ss_pred CceEEecCCCC
Q psy16872 25 NVRVRFAPSPT 35 (605)
Q Consensus 25 ~~~~~~~~~~~ 35 (605)
+|++|||||||
T Consensus 29 ~v~tRFaPsPt 39 (554)
T PRK05347 29 RVHTRFPPEPN 39 (554)
T ss_pred ceEEEeCCCCC
Confidence 89999999999
No 146
>KOG1247|consensus
Probab=46.56 E-value=79 Score=35.34 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=61.7
Q ss_pred eeEe-cCCCCcCChhhHHHH-HHHHHHHHHcC--CeEEEeccCCCCCC----------------CcHHHHHHHHHHHHHc
Q psy16872 72 LKHF-LTSTGLLHLGGLRTA-LYNYLFAKSHN--GSFILRIEDTDQTR----------------FVPEAVEKLEQDLKWI 131 (605)
Q Consensus 72 v~~f-p~PtG~LHiG~~RtA-L~n~l~Ar~~~--G~fiLRiEDTD~~R----------------~~~~~~~~I~~~L~wl 131 (605)
.|-. |+.+.-.|+||.-.. |-...|||-+. |---++|=.||.== .-+.+...-.+.-+|+
T Consensus 18 itsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~vy~Wf 97 (567)
T KOG1247|consen 18 ITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKVVYDWF 97 (567)
T ss_pred eecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHHHHHhh
Confidence 3444 688999999998744 45688999765 55578888887411 0122333344566999
Q ss_pred CCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCC
Q psy16872 132 GVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGS 169 (605)
Q Consensus 132 Gl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~ 169 (605)
+|++|+. |-...-...++-+.+..+|.++|+
T Consensus 98 ~IdfD~f-------grtTT~~qT~i~Q~iF~kl~~ng~ 128 (567)
T KOG1247|consen 98 KIDFDEF-------GRTTTKTQTEICQDIFSKLYDNGY 128 (567)
T ss_pred ccccccc-------CcccCcchhHHHHHHhhchhhcCC
Confidence 9999985 333334556788888888888864
No 147
>KOG0432|consensus
Probab=45.05 E-value=19 Score=43.21 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCCC--cEEEecceecCCCccccccCCC
Q psy16872 288 TKHILIYKAFGWTPP--KFAHLPLLLNLNGSKLSKRQGD 324 (605)
Q Consensus 288 pkqi~ly~alG~~~P--~f~H~plil~~dg~KLSKR~g~ 324 (605)
++.++|-..|.=+.| +..-+||+.+..|+||||+-|+
T Consensus 562 aRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGN 600 (995)
T KOG0432|consen 562 ARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGN 600 (995)
T ss_pred HHHHHhhhhhcCCCCchheeechhhccccccccchhhcc
Confidence 455555444444566 2334599999999999999997
No 148
>KOG0433|consensus
Probab=38.30 E-value=27 Score=41.35 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=42.9
Q ss_pred EcCCCCcccHHHHHHHHH--HcCCCCC---cEEEecceecCCCccccccCCCCChHHHHHcC------CCHHHHHHHHH
Q psy16872 278 LRGVEWQISTTKHILIYK--AFGWTPP---KFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSE------FLPNALINFVT 345 (605)
Q Consensus 278 IRG~d~l~stpkqi~ly~--alG~~~P---~f~H~plil~~dg~KLSKR~g~~sv~~~r~~G------~~PeAl~nfla 345 (605)
+-|.|.+. --.|-.|.- |---..| .|.| +..++.+|.||||+-|++.=-...-.| |-.++||.++|
T Consensus 571 LEG~DQ~r-GWFQSsLLTsvA~q~kAPYk~vivH-GFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA 647 (937)
T KOG0433|consen 571 LEGVDQFR-GWFQSSLLTSVAVQNKAPYKKVIVH-GFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVA 647 (937)
T ss_pred Eecchhcc-hHHHHHHHHHHHHhccCCchheeee-eeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeee
Confidence 45666543 234444433 2222245 3555 677999999999999996544455556 88899999998
No 149
>KOG1195|consensus
Probab=35.59 E-value=49 Score=37.69 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=53.8
Q ss_pred CCcEEEecCCcccch---hhhhhh----hhcCCcceEE-cCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecCCCccc
Q psy16872 248 GDPVIIKSDGFPTYH---FANVVD----DHHMNISHVL-RGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~---fA~vVD----D~~m~ITHVI-RG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~dg~KL 318 (605)
+=-++.||||+-.|- +|.++| -+.-++--|+ ||.+-+.+.- ..+.+++|++ .-.+-|+++= -+.-|
T Consensus 294 ~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf~~l--f~ilk~mg~~~a~~~qHV~~G---~v~Gm 368 (567)
T KOG1195|consen 294 GKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHFCQL--FEILKKMGFDWAKKLQHVNFG---RVQGM 368 (567)
T ss_pred ceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHHHHH--HHHHHHhCchhhhhcceeccc---ccccc
Confidence 456778999987774 555554 3444555665 4333221111 1455778876 3347886641 23469
Q ss_pred cccCCCCC-hHHHHHcCCCHHHHHHHHHHhc
Q psy16872 319 SKRQGDMS-VEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 319 SKR~g~~s-v~~~r~~G~~PeAl~nfla~lG 348 (605)
|.|+|.+. +.+..+. .-+-+.++++..-
T Consensus 369 sTRkG~~~fl~dil~e--~re~m~e~M~s~~ 397 (567)
T KOG1195|consen 369 STRKGKVVFLDDILEE--AREQMLEVMASNK 397 (567)
T ss_pred cccCCceeeHHHHHHH--HHHHHHHHHHhcc
Confidence 99999853 4444443 2345667776543
No 150
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=34.90 E-value=1.2e+02 Score=29.56 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=70.8
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCC---C---CcHHHHHHHHHHHHHcCCC-CCCCccCCCccCcccccc
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQT---R---FVPEAVEKLEQDLKWIGVV-PDESETVGGNYGPYLQSK 152 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~---R---~~~~~~~~I~~~L~wlGl~-~De~p~~~g~~gpy~QSe 152 (605)
-++|+||+..+-. |...--+.++=|-.-++. + ...+-.+.|...++..+.. ..- .|.-..+
T Consensus 9 dP~H~GHl~ii~~----a~~~~D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~--------vP~~d~~ 76 (165)
T TIGR01527 9 QPFHLGHLEVIKK----IAEEVDELIIGIGSAQESHTLENPFTAGERILMITQSLKEVGDLTYYI--------IPIEDIE 76 (165)
T ss_pred CCCCHHHHHHHHH----HHHHCCEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCceEEE--------EecCCcc
Confidence 4699999976554 333345666544332322 1 1245556666777766611 111 1222234
Q ss_pred cHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCC----CCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 153 RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGL----VPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 153 r~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~----~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
..+.+.++++.+.-.=.+- ||+......+- ...|- +|-++.. ..|-.++.+.|.+|.+ |+=-||...
T Consensus 77 ~~~~w~~~v~~~~p~~D~v--f~~~~~~~~~f---~e~g~~v~~~p~~~r~--~~S~T~IR~~i~~~~~--W~~lVP~~v 147 (165)
T TIGR01527 77 RNSIWVSYVESMTPPFDVV--YSNNPLVRRLF---KEAGYEVKRPPMFNRK--EYSGTEIRRRMLNGED--WEHLVPKAV 147 (165)
T ss_pred HHHHHHHHHHHhCCCCCEE--EECCHHHHHHH---HHcCCEEEECCCcCCC--cccHHHHHHHHHcCCC--hhhhCCHHH
Confidence 5567777777666533343 44433222211 12232 2344432 6788999999998875 776677654
Q ss_pred cceeccc
Q psy16872 229 ESWQDLV 235 (605)
Q Consensus 229 ~~~~D~v 235 (605)
..+-+-+
T Consensus 148 ~~~i~~i 154 (165)
T TIGR01527 148 ADVIKEI 154 (165)
T ss_pred HHHHHHc
Confidence 3333333
No 151
>COG4720 Predicted membrane protein [Function unknown]
Probab=34.52 E-value=33 Score=33.80 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=25.5
Q ss_pred ceeEecCCC--CcCChhhHHHHHHHHHHHHHcC
Q psy16872 71 KLKHFLTST--GLLHLGGLRTALYNYLFAKSHN 101 (605)
Q Consensus 71 ~v~~fp~Pt--G~LHiG~~RtAL~n~l~Ar~~~ 101 (605)
++.+.|+|. |++|+|.+--++...+|--..|
T Consensus 24 ~~i~IPtp~~~~~i~L~da~i~las~lfGs~~G 56 (177)
T COG4720 24 RLIRIPTPIPNGFLTLGDAGIALASFLFGSRAG 56 (177)
T ss_pred heeEecCCCCCCeeeHHHHHHHHHHHHHcchHH
Confidence 467788555 9999999999999999976654
No 152
>KOG3349|consensus
Probab=33.66 E-value=34 Score=33.13 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.5
Q ss_pred HHHHHHHHHCCCEeeeCCCH
Q psy16872 158 QKEVQTLLHNGSAYKCFCSD 177 (605)
Q Consensus 158 ~~~a~~Li~~G~AY~Cfcs~ 177 (605)
.|.|++|.+.|+.|+|.||.
T Consensus 117 ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 117 LELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHHHHHHHhcCcEEEeeccc
Confidence 58999999999999999985
No 153
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=33.13 E-value=20 Score=31.47 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=29.0
Q ss_pred eEEcCCCCcccHHHHHH--HHHHcCCCCCcEEEecceecCCCccccccC
Q psy16872 276 HVLRGVEWQISTTKHIL--IYKAFGWTPPKFAHLPLLLNLNGSKLSKRQ 322 (605)
Q Consensus 276 HVIRG~d~l~stpkqi~--ly~alG~~~P~f~H~plil~~dg~KLSKR~ 322 (605)
|++||+|+...-....+ ....|+ +.|+...+|- .+.++..||||+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l~-~~~e~v~~~~-~~~~~~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITLP-VDPEQVELPR-LNLETTVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCCC-CCCeEEEccc-cccCceeeccCC
Confidence 88999999875554443 111232 3466666664 335889999985
No 154
>PF15522 Toxin_42: Putative toxin 42
Probab=31.84 E-value=44 Score=32.27 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=35.5
Q ss_pred HHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHh
Q psy16872 557 LLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYS 594 (605)
Q Consensus 557 pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l 594 (605)
-+|+++.|...||++.+.=++-|++..++|.+..++.+
T Consensus 14 K~R~~iiG~~~~~~I~d~~~~r~~~AF~rr~Rem~dA~ 51 (205)
T PF15522_consen 14 KIRVEIIGGGTDVPIWDSEEYRLSDAFIRRMREMLDAV 51 (205)
T ss_pred hhhhhhhcCCCCCCcccchhccchHHHHHHHHHHHHhc
Confidence 37999999999999999999999999999999998865
No 155
>KOG2361|consensus
Probab=31.73 E-value=36 Score=35.42 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=51.4
Q ss_pred CEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCC-Cc-eE--------------------EEEcCC
Q psy16872 169 SAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENS-KY-CI--------------------RFKLTN 226 (605)
Q Consensus 169 ~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~-~~-~i--------------------R~k~~~ 226 (605)
..|.|.||+..++..++..... +.+....|-+++.++....+..|. +. +. |+--|.
T Consensus 99 ~v~acDfsp~Ai~~vk~~~~~~--e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 99 KVYACDFSPRAIELVKKSSGYD--ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EEEEcCCChHHHHHHHhccccc--hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 5789999999988776432111 112223344566555333222221 11 11 111144
Q ss_pred Cccceecccccee---eecCCCCCCCcEEEecCCcccchhhhh
Q psy16872 227 HTESWQDLVYGDI---SYNVFHNEGDPVIIKSDGFPTYHFANV 266 (605)
Q Consensus 227 ~~~~~~D~v~G~i---~~~~~~~~~D~Vi~ksDG~PtY~fA~v 266 (605)
+...|+|-=.|.. .|......++---+|.||++.|-|..=
T Consensus 177 G~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~e 219 (264)
T KOG2361|consen 177 GSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEE 219 (264)
T ss_pred cEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHH
Confidence 5566777655554 333344445555578999999988763
No 156
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=29.78 E-value=36 Score=40.88 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=24.9
Q ss_pred CCChhhHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHHHHHHHhC
Q psy16872 530 PFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILT 579 (605)
Q Consensus 530 ~~~~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~eim~lLG 579 (605)
..+++.+...++-+. +-.+..+..=..|...+.+ |-+..++++-+|
T Consensus 661 ~l~pe~LaeLv~lV~-~g~IS~~~AK~VL~~m~~~---~~~p~~IIee~G 706 (771)
T PRK14703 661 PFTPAALARLVALVD-AGRISTRIAKDVLAELAAS---GGDPEAIVEAKG 706 (771)
T ss_pred CCCHHHHHHHHHHHH-cCCccHHHHHHHHHHHHhc---CCCHHHHHHhcC
Confidence 466777776664444 3345544444444544433 334567777766
No 157
>KOG2145|consensus
Probab=26.20 E-value=60 Score=34.62 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=35.1
Q ss_pred HHHcCCCCCcEEEecceecCCC--ccccccCCCCChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 294 YKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGDMSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 294 y~alG~~~P~f~H~plil~~dg--~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
...||++.|.-.|..+.-...| +|||-++.+.+|- . -=.|..|.|=+....
T Consensus 253 A~rlg~~Kpali~stffpaLqG~~~KMSASdpns~If--l--tdt~~qIk~KI~~~a 305 (397)
T KOG2145|consen 253 APRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIF--L--TDTAKQIKNKINKYA 305 (397)
T ss_pred hhhhCCCCcceeehhhchhhhCcccccccCCCCceEE--e--cCcHHHHHHHHHHhh
Confidence 4679999999999776545555 5999998876541 1 125667777775554
No 158
>cd00498 Hsp33 Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.
Probab=23.45 E-value=1e+02 Score=32.24 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=27.2
Q ss_pred HHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceE
Q psy16872 164 LLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCI 220 (605)
Q Consensus 164 Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~i 220 (605)
|-..--.|.|.||+|++... -..|+.+|+++.+.++....+
T Consensus 223 ~~~~~v~f~C~CS~er~~~~----------------L~~Lg~~El~~i~~e~g~iev 263 (275)
T cd00498 223 LEKQPVRFRCDCSRERVAAA----------------LLTLGKEELADMIEEDGGIEV 263 (275)
T ss_pred ccCCCcCeeCCCCHHHHHHH----------------HHhCCHHHHHHHHHcCCCEEE
Confidence 34455689999999987531 245788888887766443333
No 159
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=22.23 E-value=1.9e+02 Score=29.65 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=43.2
Q ss_pred eEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCC--CccCCCccCcc-cccccHHHHHHHHHHHHHCC
Q psy16872 103 SFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDE--SETVGGNYGPY-LQSKRLALYQKEVQTLLHNG 168 (605)
Q Consensus 103 ~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De--~p~~~g~~gpy-~QSer~~~Y~~~a~~Li~~G 168 (605)
+-++||||+.|. ...+....|.+-|.-.||.+-= .|.-..+.+.+ ..-.....+.++++.+.++|
T Consensus 1 r~lirleDVsP~-~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~G 68 (243)
T PF10096_consen 1 RALIRLEDVSPF-SDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARG 68 (243)
T ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcC
Confidence 358999999995 5667778899999999998532 23322332222 11122356777888888998
No 160
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.95 E-value=1.1e+02 Score=21.51 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=15.2
Q ss_pred hHHHHHcCCCHHHHHHHHHH
Q psy16872 327 VEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 327 v~~~r~~G~~PeAl~nfla~ 346 (605)
+.+-++.|++++-+++||..
T Consensus 9 i~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 9 IKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 46778999999999999964
No 161
>PRK00114 hslO Hsp33-like chaperonin; Reviewed
Probab=21.93 E-value=1.1e+02 Score=32.27 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=23.8
Q ss_pred HHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCC
Q psy16872 164 LLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENS 216 (605)
Q Consensus 164 Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~ 216 (605)
|-..--.|.|.||++++... -..|+.+|+++.+.++.
T Consensus 229 l~~~~v~f~C~CS~er~~~~----------------L~~Lg~~El~~i~~e~~ 265 (293)
T PRK00114 229 LEPQPVEFKCDCSRERSANA----------------LKSLGKEELQEMIAEDG 265 (293)
T ss_pred ccCccCceeCCCCHHHHHHH----------------HHhCCHHHHHHHHHcCC
Confidence 44555789999999987531 13466777766655443
No 162
>KOG0437|consensus
Probab=20.94 E-value=37 Score=40.33 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=47.9
Q ss_pred CCcceEEcCCCCcccHH-----HHHHHHHHcCCCCCcE--EEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHH
Q psy16872 272 MNISHVLRGVEWQISTT-----KHILIYKAFGWTPPKF--AHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINF 343 (605)
Q Consensus 272 m~ITHVIRG~d~l~stp-----kqi~ly~alG~~~P~f--~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nf 343 (605)
--|..-+-|.|++.|-- -|.+|+..-.|+.-.. +|+ ++ +++||||+.|+ .|+++-.+. |..++.|--
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHL--mL--NsEKMSKSTGNfmTL~qaieK-Fgad~tRla 736 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHL--ML--NSEKMSKSTGNFMTLEQAIEK-FGADGTRLA 736 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceE--Ee--cchhhccccCCeeeHHHHHHH-hCccceeee
Confidence 34555566899887622 3445555445654333 563 33 56799999998 478777776 778888888
Q ss_pred HHHhc
Q psy16872 344 VTNFG 348 (605)
Q Consensus 344 la~lG 348 (605)
||-.|
T Consensus 737 lAdaG 741 (1080)
T KOG0437|consen 737 LADAG 741 (1080)
T ss_pred eeccc
Confidence 88777
No 163
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=20.91 E-value=1.4e+02 Score=23.47 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHH
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNL 182 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~ 182 (605)
.-+|+..|..+.++|.++|.-+. |.++|.+
T Consensus 7 ti~RL~~Y~r~L~~l~~~G~~~v---SS~~La~ 36 (50)
T PF06971_consen 7 TIRRLPLYLRYLEQLKEEGVERV---SSQELAE 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEE----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeeE---CHHHHHH
Confidence 45799999999999999999765 6777753
No 164
>KOG0434|consensus
Probab=20.67 E-value=41 Score=39.74 Aligned_cols=42 Identities=29% Similarity=0.311 Sum_probs=28.7
Q ss_pred EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 304 FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 304 f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
..-.+|++-.||+|||||..+ +.-....+. |-.+|++-||..
T Consensus 588 vIvnGlVLAeDG~KMSKrlkNYPdP~~iink-YGADalRlYLIn 630 (1070)
T KOG0434|consen 588 VIVNGLVLAEDGKKMSKRLKNYPDPSLIINK-YGADALRLYLIN 630 (1070)
T ss_pred eeEeeeEEecccHHHhhhhhcCCCHHHHHHh-hcchheeeeeec
Confidence 455678899999999999765 222223333 777888887754
Done!