Query psy16872
Match_columns 605
No_of_seqs 301 out of 2101
Neff 6.0
Searched_HMMs 29240
Date Sat Aug 17 00:15:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gri_A Glutamate--tRNA ligase; 100.0 2E-130 6E-135 1087.8 49.3 472 80-596 35-510 (512)
2 2ja2_A Glutamyl-tRNA synthetas 100.0 1E-125 5E-130 1040.4 46.3 467 80-597 17-490 (498)
3 1j09_A Glutamyl-tRNA synthetas 100.0 6E-123 2E-127 1014.6 49.8 454 80-591 12-467 (468)
4 4g6z_A Glutamate-tRNA ligase; 100.0 2E-124 7E-129 1026.6 29.3 454 80-592 36-490 (490)
5 2cfo_A Glutamyl-tRNA synthetas 100.0 3E-119 1E-123 991.0 47.5 464 80-600 12-486 (492)
6 3afh_A Glutamyl-tRNA synthetas 100.0 4E-120 1E-124 996.3 40.6 452 77-596 33-487 (488)
7 2o5r_A Glutamyl-tRNA synthetas 100.0 1E-115 4E-120 961.2 45.6 454 80-591 24-479 (481)
8 3al0_C Glutamyl-tRNA(Gln) amid 100.0 6E-115 2E-119 974.4 31.3 457 71-595 130-590 (592)
9 1nzj_A Hypothetical protein YA 100.0 4E-82 1.4E-86 657.0 20.5 273 80-410 16-288 (298)
10 1qtq_A GLNRS, protein (glutami 100.0 6.4E-78 2.2E-82 664.7 25.6 317 51-421 11-355 (553)
11 2hz7_A Glutaminyl-tRNA synthet 100.0 3.1E-75 1.1E-79 666.9 22.2 316 50-422 50-396 (851)
12 3aii_A Glutamyl-tRNA synthetas 100.0 6.1E-74 2.1E-78 633.0 24.3 305 70-405 96-433 (553)
13 1irx_A Lysyl-tRNA synthetase; 100.0 2E-61 6.7E-66 537.3 4.2 425 75-589 27-521 (523)
14 1li5_A Cysrs, cysteinyl-tRNA s 99.9 8.2E-24 2.8E-28 231.8 18.2 241 70-370 21-311 (461)
15 2csx_A Methionyl-tRNA syntheta 99.9 2E-22 6.7E-27 222.3 16.1 263 75-370 13-341 (497)
16 3tqo_A Cysteinyl-tRNA syntheta 99.9 5.4E-22 1.8E-26 216.7 18.0 243 69-370 23-314 (462)
17 2d5b_A Methionyl-tRNA syntheta 99.9 1.6E-21 5.3E-26 215.0 15.8 252 76-370 12-343 (500)
18 1iq0_A Arginyl-tRNA synthetase 99.9 4.9E-22 1.7E-26 223.9 11.9 251 72-422 106-467 (592)
19 3c8z_A Cysteinyl-tRNA syntheta 99.8 6.6E-21 2.3E-25 206.1 15.1 245 69-370 37-337 (414)
20 2dlc_X Tyrosyl-tRNA synthetase 99.8 1.5E-20 5.2E-25 202.0 10.9 192 77-347 47-253 (394)
21 3sp1_A Cysteinyl-tRNA syntheta 99.8 9.7E-19 3.3E-23 192.3 17.0 242 71-370 42-345 (501)
22 3fnr_A Arginyl-tRNA synthetase 99.8 1.8E-18 6.1E-23 189.4 15.2 114 248-370 206-330 (464)
23 3h99_A Methionyl-tRNA syntheta 99.7 9.3E-18 3.2E-22 187.8 10.0 272 76-370 27-392 (560)
24 1n3l_A Tyrosyl-tRNA synthetase 99.7 8.8E-17 3E-21 171.6 15.7 191 77-346 43-247 (372)
25 4dlp_A Aminoacyl-tRNA syntheta 99.7 1.6E-17 5.5E-22 184.9 8.6 260 76-370 34-367 (536)
26 2cyb_A Tyrosyl-tRNA synthetase 99.7 2.8E-16 9.5E-21 164.8 16.0 192 77-347 40-239 (323)
27 1f7u_A Arginyl-tRNA synthetase 99.7 1.5E-16 5.2E-21 179.4 12.0 204 117-427 270-491 (607)
28 2x1l_A Methionyl-tRNA syntheta 99.6 5.8E-16 2E-20 171.7 11.0 262 72-370 17-356 (524)
29 3kfl_A Methionyl-tRNA syntheta 99.6 1.3E-15 4.3E-20 170.8 6.7 262 76-370 35-385 (564)
30 2zue_A Arginyl-tRNA synthetase 99.5 3.3E-14 1.1E-18 161.1 13.3 230 71-370 121-498 (629)
31 1rqg_A Methionyl-tRNA syntheta 99.4 1.6E-12 5.4E-17 149.6 11.8 90 74-172 9-119 (722)
32 3u1f_A Methionyl-tRNA syntheta 99.3 5.2E-12 1.8E-16 140.4 8.4 90 76-172 18-125 (542)
33 2g36_A Tryptophanyl-tRNA synth 99.1 1.6E-10 5.5E-15 121.9 12.1 195 76-347 19-230 (340)
34 2cya_A Tyrosyl-tRNA synthetase 99.1 9.5E-10 3.2E-14 117.0 14.3 194 77-347 43-264 (364)
35 2yy5_A Tryptophanyl-tRNA synth 99.0 3.4E-10 1.2E-14 119.8 5.2 196 77-346 12-229 (348)
36 1i6k_A TRPRS, tryptophanyl-tRN 99.0 1.7E-09 5.9E-14 113.5 10.4 191 77-347 9-220 (328)
37 2el7_A Tryptophanyl-tRNA synth 98.9 4.3E-09 1.5E-13 110.9 11.3 192 77-347 9-220 (337)
38 2zp1_A Tyrosyl-tRNA synthetase 98.8 6E-09 2E-13 108.8 9.4 190 72-347 29-229 (314)
39 1yi8_B Tryptophanyl-tRNA synth 98.8 3.8E-09 1.3E-13 111.9 7.6 200 71-347 22-240 (351)
40 1ile_A Ilers, isoleucyl-tRNA s 98.8 1.9E-08 6.3E-13 117.5 12.6 91 73-172 44-173 (821)
41 1gax_A Valrs, valyl-tRNA synth 98.8 2E-08 6.7E-13 117.6 11.3 90 76-172 43-168 (862)
42 3tzl_A Tryptophanyl-tRNA synth 98.4 1.7E-06 5.7E-11 90.6 13.1 191 77-347 11-217 (322)
43 1h3f_A Tyrosyl-tRNA synthetase 98.3 4.4E-06 1.5E-10 90.7 12.8 84 258-347 172-257 (432)
44 3jxe_A Tryptophanyl-tRNA synth 98.0 2.2E-05 7.5E-10 84.2 10.4 189 72-346 74-278 (392)
45 2v0c_A Aminoacyl-tRNA syntheta 97.9 1.2E-05 4.1E-10 94.4 8.3 92 74-172 40-151 (878)
46 2ip1_A Tryptophanyl-tRNA synth 97.9 3E-05 1E-09 84.2 9.1 71 272-348 248-322 (432)
47 4arc_A Leucine--tRNA ligase; l 97.8 1.9E-05 6.5E-10 92.6 7.2 93 73-172 59-171 (880)
48 1wkb_A Leucyl-tRNA synthetase; 97.8 2.7E-05 9.4E-10 90.6 8.1 89 273-370 603-696 (810)
49 2jan_A Tyrosyl-tRNA synthetase 97.8 6.5E-05 2.2E-09 81.4 9.9 86 258-346 168-259 (432)
50 3hzr_A Tryptophanyl-tRNA synth 97.7 8.4E-05 2.9E-09 79.5 9.9 69 274-348 225-296 (386)
51 1r6t_A Tryptophanyl-tRNA synth 97.7 5E-05 1.7E-09 83.4 8.1 70 273-348 303-376 (477)
52 3hv0_A Tryptophanyl-tRNA synth 97.7 7.8E-05 2.7E-09 80.0 8.7 67 275-347 222-292 (393)
53 2cyc_A Tyrosyl-tRNA synthetase 97.5 0.00068 2.3E-08 72.2 13.6 198 73-347 35-277 (375)
54 2j5b_A Tyrosyl-tRNA synthetase 97.5 0.00014 4.8E-09 76.8 7.8 199 73-347 42-258 (348)
55 3tze_A Tryptophanyl-tRNA synth 97.5 9.3E-05 3.2E-09 79.6 6.0 68 273-346 243-314 (406)
56 1ffy_A Isoleucyl-tRNA syntheta 97.4 0.00013 4.3E-09 86.2 7.0 87 273-370 548-640 (917)
57 2yxn_A Tyrosyl-tRNA synthetase 97.4 0.00013 4.4E-09 76.3 5.9 86 258-346 172-262 (322)
58 3a04_A Tryptophanyl-tRNA synth 97.4 0.00035 1.2E-08 74.4 9.1 192 77-346 78-281 (372)
59 1r6u_A Tryptophanyl-tRNA synth 97.3 0.00029 9.9E-09 76.5 7.9 67 274-346 257-327 (437)
60 3i05_A Tryptophanyl-tRNA synth 97.3 0.00012 4E-09 78.6 3.8 67 274-346 225-294 (395)
61 1jil_A Tyrrs, tyrosyl-tRNA syn 97.3 0.00082 2.8E-08 72.6 10.3 86 258-346 167-258 (420)
62 1wz2_A Leucyl-tRNA synthetase; 97.2 0.00024 8.2E-09 84.3 6.1 89 273-370 603-696 (967)
63 3vgj_A Tyrosyl-tRNA synthetase 97.2 0.00094 3.2E-08 71.1 9.8 85 257-347 184-273 (373)
64 3foc_A Tryptophanyl-tRNA synth 97.2 0.00073 2.5E-08 73.5 8.6 236 72-347 92-359 (451)
65 2ts1_A Tyrosyl-tRNA synthetase 97.1 0.00046 1.6E-08 74.5 5.8 86 258-346 166-257 (419)
66 3prh_A Tryptophanyl-tRNA synth 97.0 0.00054 1.8E-08 73.3 5.6 189 77-346 43-253 (388)
67 3sz3_A Tryptophanyl-tRNA synth 97.0 0.00062 2.1E-08 71.7 5.5 190 77-346 14-228 (341)
68 3n9i_A Tryptophanyl-tRNA synth 97.0 0.0015 5E-08 68.9 8.3 190 77-346 23-234 (346)
69 3p0j_A Tyrosyl-tRNA synthetase 96.8 0.012 4.1E-07 67.3 14.4 85 257-347 167-256 (690)
70 1y42_X Tyrosyl-tRNA synthetase 96.3 0.0062 2.1E-07 65.2 7.5 87 257-346 212-320 (392)
71 1ffy_A Isoleucyl-tRNA syntheta 95.7 0.021 7.1E-07 67.5 8.9 91 73-172 54-178 (917)
72 1wkb_A Leucyl-tRNA synthetase; 94.1 0.082 2.8E-06 61.5 8.0 90 76-172 43-178 (810)
73 1wz2_A Leucyl-tRNA synthetase; 93.8 0.088 3E-06 62.5 7.7 93 73-172 40-178 (967)
74 4arc_A Leucine--tRNA ligase; l 92.8 0.2 6.7E-06 58.9 8.4 92 270-370 540-685 (880)
75 2pid_A Tyrosyl-tRNA synthetase 91.6 0.052 1.8E-06 57.3 1.5 87 257-346 190-281 (356)
76 2v0c_A Aminoacyl-tRNA syntheta 90.7 0.47 1.6E-05 55.7 8.5 47 316-370 636-683 (878)
77 3p0j_A Tyrosyl-tRNA synthetase 49.3 33 0.0011 39.1 8.0 69 78-154 390-469 (690)
78 2pid_A Tyrosyl-tRNA synthetase 47.9 16 0.00053 38.3 4.7 38 72-110 47-87 (356)
79 1qtq_A GLNRS, protein (glutami 41.9 9.4 0.00032 42.4 1.9 27 375-402 343-369 (553)
80 2hz7_A Glutaminyl-tRNA synthet 29.1 19 0.00066 41.9 1.8 12 24-35 65-76 (851)
No 1
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=1.6e-130 Score=1087.79 Aligned_cols=472 Identities=36% Similarity=0.613 Sum_probs=425.8
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||||.+||+||||+||+|+++|++
T Consensus 35 G~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~ 114 (512)
T 4gri_A 35 GLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQ 114 (512)
T ss_dssp SCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||++|+++.|+.+.+.+.+|.|++.||+++.++..++...|.++++|||+|. +.+.|+|+|+|+
T Consensus 115 ~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~~~~D~v~g~ 194 (512)
T 4gri_A 115 YAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDTSFDDILLGR 194 (512)
T ss_dssp HHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEE
T ss_pred HHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCCceeeccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999994 578999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+.+..+...+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||++.+|+||
T Consensus 195 i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kL 274 (512)
T 4gri_A 195 ITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKL 274 (512)
T ss_dssp EEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBC
T ss_pred EEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCCCCCeEEecchhcccccccc
Confidence 99987777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+.+|.+||++||+|+||+|||++||||. ++.+|+||++||++
T Consensus 275 SKR~~~~~v~~~~~~G~lPeAl~NyLalLGws~-----~~~~Eifs~~eli~---------------------------- 321 (512)
T 4gri_A 275 SKRHGSTALRQFIEDGYLPEAIINYVTLLGWSY-----DDKREFFSKNDLEQ---------------------------- 321 (512)
T ss_dssp CTTTSCCBHHHHHHHTCCHHHHHHHHHHSSBCS-----SSSCCCCCHHHHHH----------------------------
T ss_pred CcccccccHHHHHHcCCChHHHHHHHHHhCCCC-----cccchhhhHHHHHH----------------------------
Confidence 999999999999999999999999999999988 56789999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCC-C-CCCCCHHHHHHHHHHhhcccc
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPN-S-SLQIDDDYLNYVLCWASERIF 476 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~-~~~~~~~~l~~vl~l~~~ri~ 476 (605)
.||+++|+++||+||++||.|||++||++++.+ ++++.+.+++.+.... . ....+.+++..++.++++|++
T Consensus 322 ~Fdl~~v~ks~a~fD~~KL~~~N~~~i~~~~~~-------~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~ 394 (512)
T 4gri_A 322 FFSIEKINKSPAIFDYHKLDFFNSYYIREKKDE-------DLFNLLLPFFQKKGYVSKPSTLEENQKLKLLIPLIKSRIK 394 (512)
T ss_dssp HCCGGGBCSSCCBCCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhcCCCCCCccccHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHcCCcccccchhhHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999998533 4888888888754321 1 122346799999999999999
Q ss_pred chHhhhhhhhhccccCCC-cCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHH
Q psy16872 477 KLQDLVGKDFAFIWVKPS-IEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFM 555 (605)
Q Consensus 477 ~l~dl~~~~~~ff~~~p~-~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf 555 (605)
++.|+++. ..|||..|. +..++. .. .+...+.+..+|+.+.+.|+..++|+.++++++++++++++|+|+|++|
T Consensus 395 ~l~di~~~-~~~ff~~~~~~~~de~-~~---~k~~~~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~~~g~K~k~l~ 469 (512)
T 4gri_A 395 KLSDALNM-TKFFYEDIKSWNLDEF-LS---RKKTAKEVCSILELIKPILEGFEKRSSEENDKIFYDFAESNGFKLGEIL 469 (512)
T ss_dssp STTHHHHH-THHHHSCCCCCCGGGC-----------CHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHC---CHHHH
T ss_pred cHHHHHHH-HHHHhcCCCccCccHH-HH---HHhhHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999998 677776653 222211 11 1112234555666666666666789999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhhc
Q psy16872 556 KLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRT 596 (605)
Q Consensus 556 ~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~~ 596 (605)
||||+||||+.+||+|+++|++|||++|++||++|++.|+.
T Consensus 470 ~pLR~ALTG~~~GP~L~~i~~lLGkeevl~RL~~Al~~lk~ 510 (512)
T 4gri_A 470 LPIRIAALGSKVSPPLFDSLKLIGKSKVFERIKLAQEFLRI 510 (512)
T ss_dssp HHHHHHHSSSSSCSCHHHHHHHHCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcCcCHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999865
No 2
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=1.3e-125 Score=1040.39 Aligned_cols=467 Identities=27% Similarity=0.454 Sum_probs=419.9
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+|||||||++||++||+|||||||||++|+++++++.|+++|+||||+|||||++|||||||+||+|+++|++
T Consensus 17 G~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~QS~r~~~y~~ 96 (498)
T 2ja2_A 17 GTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRD 96 (498)
T ss_dssp SSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCeeeecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
+|++|+++|+||+||||++||++.| ++.+.|.+|+|+|+||+++++|+.++..+|+++|||||+|++.+.|+|+|+|++
T Consensus 97 ~~~~L~~~g~aY~c~ct~eel~~~r-~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 175 (498)
T 2ja2_A 97 VLARLLAAGEAYHAFSTPEEVEARH-VAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPV 175 (498)
T ss_dssp HHHHHHHTTSEEEECCCHHHHHHHH-HHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEE
T ss_pred HHHHHHHcCCeEEeCCCHHHHHHHH-HHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceEEEecccceE
Confidence 9999999999999999999999999 777778889999999999999999888999999999999977899999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc-----CCCCCcEEEecceecCC
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPPKFAHLPLLLNLN 314 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al-----G~~~P~f~H~plil~~d 314 (605)
.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||++| ||++|.|+|+||++|.+
T Consensus 176 ~~~~~-~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~ 254 (498)
T 2ja2_A 176 TFAAG-SVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEG 254 (498)
T ss_dssp EECTT-CSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSS
T ss_pred eeccc-ccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCC
Confidence 99865 4699999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccc
Q psy16872 315 GSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQ 394 (605)
Q Consensus 315 g~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (605)
|+|||||+|+++|.+||++||+|+||+||++++||+. .++.++||++||++
T Consensus 255 g~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~lG~s~-----~~~~e~~s~~eli~------------------------ 305 (498)
T 2ja2_A 255 TKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSI-----ADDHDLFGLDEMVA------------------------ 305 (498)
T ss_dssp SSBCCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCS-----CSSCCCCCHHHHHH------------------------
T ss_pred CCcccccCCcccHHHHHhCCCCHHHHHHHHHHhCCCC-----CcccccCCHHHHHh------------------------
Confidence 9999999999999999999999999999999999986 45679999999999
Q ss_pred cccccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhcc
Q psy16872 395 TFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASER 474 (605)
Q Consensus 395 ~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~r 474 (605)
.|++++|+++|++||++||.|+|++||++++.+ ++++.+.+++.+.... ...+.+++.+++.++++|
T Consensus 306 ----~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~-------~l~~~l~~~l~~~~~~--~~~~~~~l~~~~~~~~~r 372 (498)
T 2ja2_A 306 ----AFDVADVNSSPARFDQKKADALNAEHIRMLDVG-------DFTVRLRDHLDTHGHH--IALDEAAFAAAAELVQTR 372 (498)
T ss_dssp ----HCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHTTS
T ss_pred ----hCChhhcCccccccCHHHHHHhhHHHHHhcCHH-------HHHHHHHHHHHHcCCC--ccccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999997533 4788888877643211 123568999999999999
Q ss_pred ccchHhhhhhhhhccccCCCc-CccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHH-HHHHhCCChh
Q psy16872 475 IFKLQDLVGKDFAFIWVKPSI-EHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLRE-FSTEQGVEYS 552 (605)
Q Consensus 475 i~~l~dl~~~~~~ff~~~p~~-~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~-~~~e~giK~k 552 (605)
++++.|+++. ..|||..|.+ +++.. .+........+|+++++.|+..++|+.++|++.+++ +++++|+|++
T Consensus 373 ~~~l~e~~~~-~~~~f~~~~~~~~~~~------~k~l~~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~v~~~~g~k~k 445 (498)
T 2ja2_A 373 IVVLGDAWEL-LKFFNDDQYVIDPKAA------AKELGPDGAAVLDAALAALTSVTDWTAPLIEAALKDALIEGLALKPR 445 (498)
T ss_dssp CSSTTHHHHH-HGGGSTTTCCCCHHHH------HHHSSHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHTTTTCCCHH
T ss_pred CCcHHHHHHH-HHHhcCCcccccHHHH------HHhccHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999998 6677732323 11110 111112345566666677776667999999999999 9999999999
Q ss_pred hHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhhcc
Q psy16872 553 TFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRTV 597 (605)
Q Consensus 553 ~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~~~ 597 (605)
++|||||+||||+.+||+|+++|++|||+++++||++|++.+++.
T Consensus 446 ~lf~pLR~ALtG~~~GP~L~~~~~lLGke~~l~RL~~al~~~~~~ 490 (498)
T 2ja2_A 446 KAFSPIRVAATGTTVSPPLFESLELLGRDRSMQRLRAARQLVGHA 490 (498)
T ss_dssp HHHHHHHHHHHSSSSCSCHHHHHHHHCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876543
No 3
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=6.5e-123 Score=1014.55 Aligned_cols=454 Identities=35% Similarity=0.602 Sum_probs=413.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+|++|||||||+||+|+++|++
T Consensus 12 G~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~~~y~~ 91 (468)
T 1j09_A 12 GDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQK 91 (468)
T ss_dssp SSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||+++|+++|+++. +|+|+||+++.+|+.+++++|+++|||||+|. +.+.|+|+|+|+
T Consensus 92 ~~~~L~~~G~aY~c~ct~~el~~~r~~~~------~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~ 165 (468)
T 1j09_A 92 YAEELLKRGWAYRAFETPEELEQIRKEKG------GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGV 165 (468)
T ss_dssp HHHHHHHHTSEEEECCCHHHHHHHHHHHS------SCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEE
T ss_pred HHHHHHHcCCeEEcCCCHHHHHHHHHHcC------CCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecccee
Confidence 99999999999999999999999887642 79999999999999999999999999999995 578999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+||++|.+|+||
T Consensus 166 ~~~~~~-~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g~kl 244 (468)
T 1j09_A 166 VVYDNQ-EIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKI 244 (468)
T ss_dssp EEEEGG-GSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSCBC
T ss_pred Eeeccc-CCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCCCcc
Confidence 999854 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+.+|.+||++||+|+||+|||+++||+. .+..++||++||++
T Consensus 245 SKR~g~~~l~~~~~~G~~peal~~~l~~lG~~~-----~~~~~~~~~~el~~---------------------------- 291 (468)
T 1j09_A 245 SKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSM-----PDGREIFTLEEFIQ---------------------------- 291 (468)
T ss_dssp CTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCC-----TTCCSCCCHHHHHH----------------------------
T ss_pred ccccchhhHHHHHHCCCCHHHHHHHHHHhccCC-----cccccCCCHHHHHh----------------------------
Confidence 999999999999999999999999999999886 45668999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHh-hccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccc
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRR-VMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFK 477 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~ 477 (605)
.|++++|+++|++||++||.|+|++||+. ++ .+ ++++.+.+++.+.... ..+.+++.+++.++++|+++
T Consensus 292 ~f~~~~~~~~~~~~d~~kl~~~N~~~i~~~~~-~~------~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~ 361 (468)
T 1j09_A 292 AFTWERVSLGGPVFDLEKLRWMNGKYIREVLS-LE------EVAERVKPFLREAGLS---WESEAYLRRAVELMRPRFDT 361 (468)
T ss_dssp HCCGGGCCCSCCBCCHHHHHHHHHHHHHHTSC-HH------HHHHHHHHHHHHTTCC---CSCHHHHHHHHHHHGGGCSS
T ss_pred hCChhhcCccccccChHHhhhhcHHHHHhcCC-HH------HHHHHHHHHHHHcCCC---cccHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999998 54 32 5788888887754321 13568999999999999999
Q ss_pred hHhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 478 LQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 478 l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
+.|+++. ..|||..|....+. ...+.. .. ..+|+++++.|++.++|+.+++++.++++++++|+|+|++|||
T Consensus 362 l~e~~~~-~~~~f~~~~~~~~~-----~~~k~~-~~-~~~L~~~~~~L~~~~~w~~e~i~~~ik~v~~~~g~K~k~lf~P 433 (468)
T 1j09_A 362 LKEFPEK-ARYLFTEDYPVSEK-----AQRKLE-EG-LPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQP 433 (468)
T ss_dssp TTHHHHH-SGGGTCSCCCCCHH-----HHHHHH-HH-HHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHH-HHHHhcCCCccCHH-----HHHhcc-cH-HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999998 67777655321110 011122 23 5667777777776667999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~~al 591 (605)
||+||||+.+||+|+++|++|||+++++||++|+
T Consensus 434 LR~ALTG~~~GP~L~~im~lLGkeetl~RL~~al 467 (468)
T 1j09_A 434 LRAALTGSLETPGLFEILALLGKERALRRLERAL 467 (468)
T ss_dssp HHHHHHSCSCCSCHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHhCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
No 4
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=2e-124 Score=1026.59 Aligned_cols=454 Identities=27% Similarity=0.489 Sum_probs=338.2
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||++ ||+||+|+++|++
T Consensus 36 G~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~--------~~~qS~r~~~y~~ 107 (490)
T 4g6z_A 36 GFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEG--------PYYQMQRMDRYRE 107 (490)
T ss_dssp SCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEE--------EEEGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCC--------CcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcC-CCccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLT-NHTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~-~~~~~~~D~v~G~ 238 (605)
++++|+++|+||+||||++||+++|+++.+.|.+|+|||+||++++++. +...+|.+++||||+| .+.+.|+|.|+|.
T Consensus 108 ~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~ 186 (490)
T 4g6z_A 108 VLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL-PEPPAGVAPVLRFRNPLTGTVAWDDAVKGR 186 (490)
T ss_dssp HHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC-CCCCTTCCCEEEECCCCSSEEEEEETTTEE
T ss_pred HHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh-hhhhcCCCceEEEecCCCCcEEEEEeeeee
Confidence 9999999999999999999999999888888888999999999986542 2345688999999998 5688999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+++++. ..+||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||+|.+|+||
T Consensus 187 ~~~~~~-~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g~KL 265 (490)
T 4g6z_A 187 VEISNE-ELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQGEKM 265 (490)
T ss_dssp EEEEGG-GCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTSSBC
T ss_pred eeeccc-cCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCCCcc
Confidence 999854 5699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|.+||++||+|+||+|||+++||+. .++++||++||++
T Consensus 266 SKR~g~~sl~~~r~~G~~peal~n~l~~lG~s~------~~~e~~s~~eli~---------------------------- 311 (490)
T 4g6z_A 266 SKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSH------GDAEIFTREQFVE---------------------------- 311 (490)
T ss_dssp CTTTTCCBHHHHHHTTCCHHHHHHHHHTSSBCC------TTCCCCCHHHHHH----------------------------
T ss_pred cCCCCCcCHHHHHHCCCCHHHHHHHHHHhCCCC------CCccccCHHHHHh----------------------------
Confidence 999999999999999999999999999999886 4679999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccch
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKL 478 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l 478 (605)
.|++++|+++|++||++||.|||++||++++.+ ++++.+.+++.+.........+.+|+.+++.++++|++++
T Consensus 312 ~F~~~~~~~~~~~fd~~KL~~~N~~~i~~~~~~-------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 384 (490)
T 4g6z_A 312 WFDLEHLGKSPAQYDHNKLNWLNNHYIKEADDA-------RLAGLAKPFFAALGIDAGAIEQGPDLVSVMGLMKDRASTV 384 (490)
T ss_dssp HCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHTTTCCHHHHHHSSCHHHHHHHHCTTCSSH
T ss_pred hCCHhhCCCCCCccCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHcCCCccccccHHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999999999987432 5888888888753211000012358999999999999999
Q ss_pred HhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHH
Q psy16872 479 QDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558 (605)
Q Consensus 479 ~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pL 558 (605)
.|+++. ..|||..|..+.+.. .+...+.+..+|+++++.|+..+ |+.+++++.++++++++|+|+|++||||
T Consensus 385 ~e~~~~-~~~~f~~~~~~~~~~------~~~~~~~~~~iL~~~~~~L~~~~-~~~e~i~~~ik~~~~~~glK~k~lf~PL 456 (490)
T 4g6z_A 385 KEIAEN-SAMFYRAPAPGADAL------AQHVTDAVRPALVEFAAALKTVE-WTKEAIAAALKAVLGAHKLKMPQLAMPV 456 (490)
T ss_dssp HHHHHH-HGGGTSCCC----------------------------------------------------------------
T ss_pred HHHHHH-HHHHcCCCCCCHHHH------HhhcCHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999998 788887765422111 11122345567777777777555 9999999999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHH
Q psy16872 559 RTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLE 592 (605)
Q Consensus 559 RiALTG~~~GP~L~eim~lLGkee~l~RL~~al~ 592 (605)
|+||||+.+||+|+++|++|||++|++||++|++
T Consensus 457 RvALTG~~~GP~L~eil~LLGKeetL~RL~~ala 490 (490)
T 4g6z_A 457 RLLVAGTTHTPSIDAVLLLFGRDVVVSRIEAALA 490 (490)
T ss_dssp --------CCSCHHHHHHHSCHHHHHHHHHCC--
T ss_pred HHHHcCCCCCCCHHHHHHHhCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998764
No 5
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=2.9e-119 Score=991.03 Aligned_cols=464 Identities=33% Similarity=0.532 Sum_probs=417.0
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||||||+||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 12 G~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~--------~~~QS~r~~~y~~ 83 (492)
T 2cfo_A 12 GNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEG--------PYFQSDRLDLYRQ 83 (492)
T ss_dssp SCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEE--------EEEGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCC--------CccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v~G~ 238 (605)
++++|+++|+||+||||+++|+++|+++.+.|.+|+|+++||+++.+|+.+++.+|.++|||||+|. +.+.|+|+|+|.
T Consensus 84 ~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~ 163 (492)
T 2cfo_A 84 AIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGR 163 (492)
T ss_dssp HHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEE
T ss_pred HHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceee
Confidence 9999999999999999999999999998888888999999999999999999999999999999986 588999999999
Q ss_pred eeecCCCCC-CCcEEEecC-----CcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceec
Q psy16872 239 ISYNVFHNE-GDPVIIKSD-----GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLN 312 (605)
Q Consensus 239 i~~~~~~~~-~D~Vi~ksD-----G~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~ 312 (605)
+.+++. .. +||||+|+| |+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||+|
T Consensus 164 ~~~~~~-~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~ 242 (492)
T 2cfo_A 164 VSWQGA-DLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILN 242 (492)
T ss_dssp EEEEGG-GGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEEC
T ss_pred eeeccc-ccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEEC
Confidence 999854 46 899999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccc
Q psy16872 313 LNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFW 392 (605)
Q Consensus 313 ~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~ 392 (605)
.+|+|||||+|+++|.+||++||+|+||+|||+++||+.. .+.+++||++||++
T Consensus 243 ~~g~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s~~----~~~~e~~~~~e~i~---------------------- 296 (492)
T 2cfo_A 243 STGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPP----EGVGELFTLDLAAK---------------------- 296 (492)
T ss_dssp SSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBCCC----TTTCSCCCHHHHHH----------------------
T ss_pred CCCCEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCC----CccccccCHHHHHh----------------------
Confidence 9999999999999999999999999999999999998751 24568999999999
Q ss_pred cccccccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHHHh
Q psy16872 393 FQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEF-PNSSLQIDDDYLNYVLCWA 471 (605)
Q Consensus 393 ~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~l~~vl~l~ 471 (605)
.|++++|+++|++||++||.|||++||++++.+ ++++.+.+++.+.. ... ...+.+|+.+++.++
T Consensus 297 ------~f~~~~i~~~~~~~d~~kl~~~N~~~i~~~~~~-------~l~~~~~~~l~~~g~~~~-~~~~~~~l~~~~~~~ 362 (492)
T 2cfo_A 297 ------HFSFERINKAGARFDWDKLNWLNRQYIQQLEPE-------EFLAELIPLWQGAGYAFD-EERDRPWLFDLAQLL 362 (492)
T ss_dssp ------HCCSTTBCSSCEECCHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHHHHTCCCC-TTTTHHHHHHHHHHH
T ss_pred ------hcChhhcCccccccCHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHhcCCcCc-ccccHHHHHHHHHHH
Confidence 999999999999999999999999999987532 47888888776542 111 113457999999999
Q ss_pred hccccchHhhhhhhhhccccCCC-cCccCCCCccchhhHHHH-HHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCC
Q psy16872 472 SERIFKLQDLVGKDFAFIWVKPS-IEHLSQHPVESYGKVMLN-LTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGV 549 (605)
Q Consensus 472 ~~ri~~l~dl~~~~~~ff~~~p~-~~~~~~~~~~~~~~~~~~-~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~gi 549 (605)
++|+.++.|+++. ..|||..+. ++... .+.... ....+|+++++.|++.++|+.+++++.++++++++|+
T Consensus 363 ~~r~~~l~e~~~~-~~~~f~~~~~~~~~~-------~k~l~~~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~~~g~ 434 (492)
T 2cfo_A 363 QPGLNTLREAIDQ-GAVFFIPSVTFDSEA-------MAQLGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGV 434 (492)
T ss_dssp GGGCSSGGGHHHH-HHHHHSSSCCCCHHH-------HHHHTSTTHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHTC
T ss_pred hccCCcHHHHHHH-HHHHhcCCCChhHHH-------HHhcCchhHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhCC
Confidence 9999999999998 667776542 22110 111111 3455677777777766679999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHH-HHHHHHHHHHHhhccccc
Q psy16872 550 EYSTFMKLLRTSLSGLKQGPSVGEMMEILTKEN-TIRRLRDVLEYSRTVKNS 600 (605)
Q Consensus 550 K~k~lf~pLRiALTG~~~GP~L~eim~lLGkee-~l~RL~~al~~l~~~~~~ 600 (605)
|++++|||||+||||+.+||+|+++|++|||++ +++||++|++.++|+..+
T Consensus 435 k~~~lf~pLR~aLtG~~~GP~l~~~~~lLGke~~~l~Rl~~al~~~~~~~~~ 486 (492)
T 2cfo_A 435 KKGATMRTLRAALTGAVHGPDLMAAWQILHQRGWDEPRLAAALKQAQTTSLE 486 (492)
T ss_dssp CHHHHHHHHHHHHHSSSSCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-C
T ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHhCCcHHHHHHHHHHHHHhhhccch
Confidence 999999999999999999999999999999999 999999999999776543
No 6
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=4e-120 Score=996.33 Aligned_cols=452 Identities=31% Similarity=0.533 Sum_probs=400.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLAL 156 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~ 156 (605)
+|||+||||||||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||++|++|||||||+||||+++
T Consensus 33 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~~ 112 (488)
T 3afh_A 33 SPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEI 112 (488)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHHH
Confidence 55599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccc
Q psy16872 157 YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVY 236 (605)
Q Consensus 157 Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~ 236 (605)
|++++++|+++|+||+||||++||++. ..|.|+++| +++++|+++|||||+|++.+.|+|+|+
T Consensus 113 y~~~~~~L~~~G~aY~c~ct~eel~~~--------~~~~Y~~~~---------~~~~~G~~~~iR~k~~~~~~~~~D~v~ 175 (488)
T 3afh_A 113 YREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPH---------EYKEKGHPVTIKFKVLPGKTSFEDLLK 175 (488)
T ss_dssp HHHHHHHHHHTTSEEEEEECSSSTTSE--------EEEESSCCH---------HHHHTTCCEEEEECCCSSEEEEEETTT
T ss_pred HHHHHHHHHHcCCeEecCCCHHHHHhh--------cCCCCCchh---------hHHhcCCCceEEEECCCCceeEEeccc
Confidence 999999999999999999999998643 246899872 356789999999999977889999999
Q ss_pred ceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc
Q psy16872 237 GDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316 (605)
Q Consensus 237 G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~ 316 (605)
|.+.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||+|.+|+
T Consensus 176 G~~~~~~~-~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g~ 254 (488)
T 3afh_A 176 GYMEFDNS-TLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRT 254 (488)
T ss_dssp EEEEEEGG-GSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTSS
T ss_pred eeEeecCC-CCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCCC
Confidence 99999854 46899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccc
Q psy16872 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTF 396 (605)
Q Consensus 317 KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (605)
|||||+|+++|.+||++||+|+||+|||+++||+. .++ +++|++||++
T Consensus 255 KLSKR~g~~~l~~~r~~G~~peal~n~l~~lG~s~-----~~~-e~~s~~e~i~-------------------------- 302 (488)
T 3afh_A 255 PLSKRHGATSVEHFRREGILSRALMNYLALLGWRV-----EGD-EIFTIEEKLQ-------------------------- 302 (488)
T ss_dssp BCCTTTSCCBHHHHHHHTCCHHHHHHHHHHTTCCC-----SSC-SCCCHHHHGG--------------------------
T ss_pred cccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCC-----ccc-ccCCHHHHHh--------------------------
Confidence 99999999999999999999999999999999886 234 9999999999
Q ss_pred cccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhcccc
Q psy16872 397 FNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIF 476 (605)
Q Consensus 397 ~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~ 476 (605)
.|++++|+++|++||++||.|+|++||++++.+ ++++.+.+++.+.... ....+.+++.+++.++++|++
T Consensus 303 --~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~-------~l~~~l~~~l~~~g~~-~~~~~~~~l~~~~~~~~~r~~ 372 (488)
T 3afh_A 303 --SFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLE-------DLKREFIEWAKYAGKE-IPSVDERYFSETLRICREKVN 372 (488)
T ss_dssp --GCCGGGSCSSCEECCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHTCC-CCCCCHHHHHHHHHHHTTSCS
T ss_pred --hCChhhcCccccccChHHhhhccHHHHhcCCHH-------HHHHHHHHHHHHcCCC-cccccHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999997533 4788888887754210 111346899999999999999
Q ss_pred chHhhhhhhhhccccCCC-cCccC-CCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhh-
Q psy16872 477 KLQDLVGKDFAFIWVKPS-IEHLS-QHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYST- 553 (605)
Q Consensus 477 ~l~dl~~~~~~ff~~~p~-~~~~~-~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~- 553 (605)
++.|+++. ..|||..|. +++.. .+.+... ....+|+++++.|++.++|+.+++++.++++++ +|+|+++
T Consensus 373 ~l~el~~~-~~~~f~~~~~~~~~~~~k~l~~~------~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~-~g~k~k~~ 444 (488)
T 3afh_A 373 TLSQLYDI-MYPFMNDDYEYEKDYVEKFLKRE------EAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSE-KGLASKKV 444 (488)
T ss_dssp SHHHHHHH-HHHHHCSCCCCCHHHHHHTTTST------THHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHH-TTSSCHHH
T ss_pred cHHHHHHH-HHHHhCCCCCcCHHHHHhhcCch------hHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH-hCCChHHH
Confidence 99999998 677776543 22111 1111111 134455566666665567999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhhc
Q psy16872 554 FMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRT 596 (605)
Q Consensus 554 lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~~ 596 (605)
+|||||+||||+.+||+|+++|++|||+++++||++|++.+++
T Consensus 445 lf~pLR~ALtG~~~GP~l~~~~~lLGke~~l~RL~~al~~~~~ 487 (488)
T 3afh_A 445 VFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQFLKK 487 (488)
T ss_dssp HHHHHHHHHHSCSSCSCHHHHHHHHCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999987753
No 7
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-115 Score=961.23 Aligned_cols=454 Identities=33% Similarity=0.564 Sum_probs=416.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+|||||||++||++||+|||||||||++|++++++++|+++|+|||++||++|..||+||||+||+|+++|++
T Consensus 24 G~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~ 103 (481)
T 2o5r_A 24 GFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYRQSERVEIYRE 103 (481)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGGHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCceeeeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCc--CcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK--CRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYG 237 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~--cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G 237 (605)
+|++|+++|+||+||||+++|++.|+.+.+.|.+|.||+. ||+++.+|+.+++.+|.++|||||+|.+.+.|+|+++|
T Consensus 104 ~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G 183 (481)
T 2o5r_A 104 HAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKG 183 (481)
T ss_dssp HHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTE
T ss_pred HHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccc
Confidence 9999999999999999999999999988888888899999 99999999999999999999999999888999999999
Q ss_pred eeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcc
Q psy16872 238 DISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSK 317 (605)
Q Consensus 238 ~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~K 317 (605)
.+.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|+++|++|||++|.|+|+|++++.+|+|
T Consensus 184 ~~~~~~~-~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G~K 262 (481)
T 2o5r_A 184 EVVFKTG-AIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGKK 262 (481)
T ss_dssp EEEECTT-SSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTSSB
T ss_pred eeEeccc-cCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCCCc
Confidence 9999854 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccc
Q psy16872 318 LSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFF 397 (605)
Q Consensus 318 LSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (605)
||||+|+.+|++|+++||+|+||+||++.+||+. ..+.++++++++++
T Consensus 263 LSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~-----~~~~e~~~~~e~i~--------------------------- 310 (481)
T 2o5r_A 263 LSKRHGATSVEAFRDMGYLPEALVNYLALLGWSH-----PEGKELLTLEELIS--------------------------- 310 (481)
T ss_dssp CCGGGSCCBHHHHHHHTCCHHHHHHHHHTSSBCC-----TTCCCCCCHHHHHH---------------------------
T ss_pred ccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCC-----CcccccCCHHHHHH---------------------------
Confidence 9999999999999999999999999999999876 34568999999999
Q ss_pred ccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccc
Q psy16872 398 NEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFK 477 (605)
Q Consensus 398 ~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~ 477 (605)
.|++++++++|++||++||.|+|++||++++.+ ++++.+.+++.+.... ..+.+++.+++.++++|+.+
T Consensus 311 -~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~-------~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~ 379 (481)
T 2o5r_A 311 -SFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIE-------KLAELAKPFFEKAGIK---IIDEEYFKKVLEITKERVEV 379 (481)
T ss_dssp -HCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHTTCC---CCCHHHHHHHHHHHTTTCSS
T ss_pred -hCChhhCCccCcccChHHhhhhCHHHHHhcCHH-------HHHHHHHHHHHHCCCC---cccHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999997533 4888888887754211 12568999999999999999
Q ss_pred hHhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 478 LQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 478 l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
+.|+++. ..|||..|.... +... ...+|+++++.|++. +|+.+++++.++++++++|+|++++|||
T Consensus 380 l~e~~~~-~~~~f~~~~~~~-----~~~~-------~~~~L~~~~~~L~~~-~~~~e~i~~~i~~v~~~~g~k~k~lf~p 445 (481)
T 2o5r_A 380 LSEFPEE-SRFFFEDPAPVE-----IPEE-------MKEVFSQLKEELQNV-RWTMEEITPVFKKVLKQHGVKPKEFYMT 445 (481)
T ss_dssp GGGHHHH-SGGGTSCCCCCC-----CCGG-------GHHHHHHHHHHTTTS-CSSHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCCcCC-----CchH-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999998 677777653211 2111 223455555566645 6999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~~al 591 (605)
||+||||+.+||+|+++|++|||++|++||++|+
T Consensus 446 lR~aLtG~~~GP~l~~~~~llGke~~l~RL~~al 479 (481)
T 2o5r_A 446 LRRVLTGREEGPELVNIIPLLGKEIFLRRIERSL 479 (481)
T ss_dssp HHHHHTSSSCCSCHHHHHHHSCHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999886
No 8
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-115 Score=974.36 Aligned_cols=457 Identities=31% Similarity=0.531 Sum_probs=403.8
Q ss_pred ceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 71 KLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 71 ~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
+++|| |+|||+|||||+|||||||++||++||+|||||||||++|+++++++.|+++|+||||+||++|++|||||||+
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp~~ 209 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYR 209 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCee
Confidence 44555 47779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+|+++|++++++|+++|+||+||||+++|++. ..|.|+++| +++++|++++||||+|.+.+
T Consensus 210 qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~--------~~~~Y~~~~---------~~~~~g~~~~iR~k~~~~~~ 272 (592)
T 3al0_C 210 QSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPH---------EYKEKGHPVTIKFKVLPGKT 272 (592)
T ss_dssp STTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEE--------CCCCSSCCH---------HHHHTTCCEEEEECCCSSCC
T ss_pred eeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhh--------cCCCCCcHH---------HHhhcCCCceEEEECCCCCc
Confidence 9999999999999999999999999999998643 357899872 35678999999999997788
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~pl 309 (605)
.|+|+|+|.+.+++ ...+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+||
T Consensus 273 ~~~D~v~G~~~~~~-~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpl 351 (592)
T 3al0_C 273 SFEDLLKGYMEFDN-STLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 351 (592)
T ss_dssp EECCTTTCSEECCS-SSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECC
T ss_pred eeeecccceeeecc-ccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeee
Confidence 99999999999985 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccc
Q psy16872 310 LLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFG 389 (605)
Q Consensus 310 il~~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~ 389 (605)
|+|.+|+|||||+|+++|.+||++||+|+||+|||+++||+. .++ +++|++||++
T Consensus 352 i~~~~g~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~-----~~~-e~~s~~e~i~------------------- 406 (592)
T 3al0_C 352 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRV-----EGD-EIFTIEEKLQ------------------- 406 (592)
T ss_dssp CBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCC-----CSC-SCCCTTTTGG-------------------
T ss_pred eeCCCCCcccccCCcccHHHHHHCCCCHHHHHHHHHHhCCCC-----ccc-ccCCHHHHHh-------------------
Confidence 999999999999999999999999999999999999999886 334 8999999999
Q ss_pred ccccccccccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHH
Q psy16872 390 IFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLC 469 (605)
Q Consensus 390 ~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~ 469 (605)
.|++++++++|++||++||.|+|++||++++.+ +|++.+.+++.+.... ....+.+++.+++.
T Consensus 407 ---------~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~-------~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 469 (592)
T 3al0_C 407 ---------SFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLE-------DLKREFIEWAKYAGKE-IPSVDERYFSETLR 469 (592)
T ss_dssp ---------GCCTTSBCSSCCBCCHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHHHHTCC-CCCCCTTTHHHHHH
T ss_pred ---------hCChhhcCcccceeCHHHHhhhhHHHhhcCCHH-------HHHHHHHHHHHHcCCC-cccccHHHHHHHHH
Confidence 999999999999999999999999999987532 5888888888754210 11124578999999
Q ss_pred HhhccccchHhhhhhhhhccccCCC-cCccCCCCccchhhHHHHH-HHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHh
Q psy16872 470 WASERIFKLQDLVGKDFAFIWVKPS-IEHLSQHPVESYGKVMLNL-TLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQ 547 (605)
Q Consensus 470 l~~~ri~~l~dl~~~~~~ff~~~p~-~~~~~~~~~~~~~~~~~~~-~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~ 547 (605)
++++|+.++.|+++. ..|||..+. +.+... .+..... ...+|+++++.|+..++|+.++|++.++++++ +
T Consensus 470 ~~~~r~~~l~el~~~-~~~~f~~~~~~~~~~~------~k~l~~~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~-~ 541 (592)
T 3al0_C 470 ICREKVNTLSQLYDI-MYPFMNDDYEYEKDYV------EKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSE-K 541 (592)
T ss_dssp HHHTTCSSSSHHHHT-TGGGTCSCCCCCTTHH------HHHTSSSSHHHHHHHHHHHHHSCSCCSSHHHHHHHHHHTT-T
T ss_pred HHhcccCcHHHHHHH-HHHHhCCCCCcCHHHH------HhhcCchhHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH-h
Confidence 999999999999998 677776543 221110 0111111 34556666666665667999999999999999 9
Q ss_pred CCChhh-HHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhh
Q psy16872 548 GVEYST-FMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSR 595 (605)
Q Consensus 548 giK~k~-lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~ 595 (605)
|+|+++ +|||||+||||+.+||+|+++|++|||+++++||++|++.++
T Consensus 542 g~k~k~~lf~pLR~ALtG~~~GP~l~~~~~lLGke~~l~RL~~al~~~~ 590 (592)
T 3al0_C 542 GLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQFLK 590 (592)
T ss_dssp TSSCHHHHHHHHHHHHTSSSCCSCHHHHTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence 999999 999999999999999999999999999999999999998663
No 9
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=4e-82 Score=657.01 Aligned_cols=273 Identities=31% Similarity=0.520 Sum_probs=236.9
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+||++ ||+||||++.|++
T Consensus 16 G~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~--------~~~qSer~~~y~~ 87 (298)
T 1nzj_A 16 GELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGD--------VLWQSQRHDAYRE 87 (298)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSC--------CEEGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCC--------CeeeeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|+||+||||+++|++. |. .|+|.||+++.+ |.+++||||++.+...|+|+++|.+
T Consensus 88 ~~~~L~~~G~aY~c~ct~~~l~~~-------~~--~Y~g~cr~~~~~--------g~~~~~R~r~~~~~~~f~D~~~G~~ 150 (298)
T 1nzj_A 88 ALAWLHEQGLSYYCTCTRARIQSI-------GG--IYDGHCRVLHHG--------PDNAAVRIRQQHPVTQFTDQLRGII 150 (298)
T ss_dssp HHHHHHHTTCEEEECCCHHHHHHT-------TS--SCCCTTTTTCCC--------STTCEEEECCSSCCCEEEETTTEEE
T ss_pred HHHHHHHcCCcccCcCCHHHHHHc-------CC--CCCCccccCCcC--------CCCCcEEEecCCcccceehhhCccc
Confidence 999999999999999999998532 32 799999998764 6778999999987889999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.++.+...+||||+|+||+|||||||||||++|||||||||+||++|||+|++||+||||++|.|+|+|+|+|.+|+|||
T Consensus 151 ~~~~~~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g~KLS 230 (298)
T 1nzj_A 151 HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLS 230 (298)
T ss_dssp ECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC-------
T ss_pred ccCcccCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCCCccc
Confidence 88754457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+|+.+|++++.+ .++.||++++||+. ....+++|++|++++.++ .
T Consensus 231 KR~g~~~v~~~~~~----~~~~~~l~~lG~~~-----~~~~~~~~~~~~l~~~~~------------------------~ 277 (298)
T 1nzj_A 231 KQNHAPALPKGDPR----PVLIAALQFLGQQA-----EAHWQDFSVEQILQSAVK------------------------N 277 (298)
T ss_dssp ------CCCSSCCH----HHHHHHHHHTTCCC-----CSCGGGSCHHHHHHHHHH------------------------T
T ss_pred ccCCccChhcCCcc----HHHHHHHHHcCCCC-----CcccccCCHHHHHHHHHH------------------------h
Confidence 99999999988665 46999999999876 456789998864432222 9
Q ss_pred ccccccccCCC
Q psy16872 400 FDLQLVNENSC 410 (605)
Q Consensus 400 F~~~~i~~~~a 410 (605)
|++++|+++|.
T Consensus 278 f~~~~~~~~~~ 288 (298)
T 1nzj_A 278 WRLTAVPESAI 288 (298)
T ss_dssp CCGGGSCCCSB
T ss_pred CCHhhCCCCCC
Confidence 99999999994
No 10
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=6.4e-78 Score=664.67 Aligned_cols=317 Identities=20% Similarity=0.263 Sum_probs=271.6
Q ss_pred hhhhhhhhhhhcCcccCCCCceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHH
Q psy16872 51 IYNRCEKLWITEGLRSSIPLKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLK 129 (605)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~ 129 (605)
|.++|++++.++++. .+++|| |+|||+||||||||||+||++||++||+|||||||||++|++++|+++|+++|+
T Consensus 11 i~~~i~~dl~~~~~~----~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~ 86 (553)
T 1qtq_A 11 IRQIIDEDLASGKHT----TVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86 (553)
T ss_dssp HHHHHHHHHHHTSCS----SCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCcC----ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHH
Confidence 668889999999886 577888 599999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH
Q psy16872 130 WIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID 209 (605)
Q Consensus 130 wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~ 209 (605)
||||+||++ ||+||+|++.|+++|++||++|+||+||||+++|++.|..+ ..++|+++||+++.+|..
T Consensus 87 wLGl~wde~--------~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~----~~~g~~~~~R~~s~ee~~ 154 (553)
T 1qtq_A 87 WLGFHWSGN--------VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTL----TQPGKNSPYRDRSVEENL 154 (553)
T ss_dssp HTTCCCSSS--------CEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCS----SSCCCCCTTTTCCHHHHH
T ss_pred HcCCCCCCC--------CeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhccc----ccCCCCCccccCchhhhH
Confidence 999999986 69999999999999999999999999999999998776332 246888999999998865
Q ss_pred ---HHHhcCC----CceEEEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcC
Q psy16872 210 ---EKLKENS----KYCIRFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRG 280 (605)
Q Consensus 210 ---~~~~~g~----~~~iR~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG 280 (605)
++|.+|. ++|||+|++. ....+.|.|.+++....+...+|.+ .|+||||||||||||+|||||||||
T Consensus 155 ~~fe~m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w----~g~PtY~la~vvDDh~~GITHviRg 230 (553)
T 1qtq_A 155 ALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW----CIYPMYDFTHCISDALEGITHSLCT 230 (553)
T ss_dssp HHHHHHHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC----SEEECHHHHHHHHHHHTTCSEEEEE
T ss_pred hHHHHHhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC----ccccccccccEEEeccCCcceEeec
Confidence 5788886 7899999874 3456667777766555444445533 4799999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCcEEEecceecCCCccccccCC----------------CCChHHHHHcCCCHHHHHHH
Q psy16872 281 VEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNLNGSKLSKRQG----------------DMSVEAIRNSEFLPNALINF 343 (605)
Q Consensus 281 ~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~dg~KLSKR~g----------------~~sv~~~r~~G~~PeAl~nf 343 (605)
+||++|||+|.+||+||||+ .|.+.|+.. +|.+|+|||||+| .+||.+||++||+|+||+||
T Consensus 231 ~e~~~n~~~q~~l~~alg~~~~P~~~~f~h-Ln~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnf 309 (553)
T 1qtq_A 231 LEFQDNRRLYDWVLDNITIPVHPRQYEFSR-LNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309 (553)
T ss_dssp GGGTTTHHHHHHHHHTSCCSCCCEEEEECC-CCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHcCCCCCCCeEEEEe-ecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHH
Confidence 99999999999999999998 683333332 5889999999996 46899999999999999999
Q ss_pred HHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccccccccc-ccCCCCCCchhhhhhh
Q psy16872 344 VTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLV-NENSCKVDLTNLNEFN 421 (605)
Q Consensus 344 la~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i-~~~~a~fd~~KL~~~N 421 (605)
|+++||+.. ....++++++++++ |+++++ ++++|+||+.||.|+|
T Consensus 310 l~~lG~s~~----~~~~e~~~le~~~~-----------------------------~~l~~~~~r~~av~d~~Kl~~~N 355 (553)
T 1qtq_A 310 CKRIGVTKQ----DNTIEMASLESCIR-----------------------------EDLNENAPRAMAVIDPVKLVIEN 355 (553)
T ss_dssp HHHHCCCSS----CCCBCHHHHHHHHH-----------------------------HHHHHHSCEECEESSEEEEEBTT
T ss_pred HHHcCCCCC----ccccchhhHHHHHH-----------------------------hCcccccccccceeccceEEEEc
Confidence 999999872 23358899999777 677774 4788888888888888
No 11
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=3.1e-75 Score=666.93 Aligned_cols=316 Identities=22% Similarity=0.285 Sum_probs=272.0
Q ss_pred hhhhhhhhhhhhcCcccCCCCceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHH
Q psy16872 50 MIYNRCEKLWITEGLRSSIPLKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDL 128 (605)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L 128 (605)
-|.++|++++.++.+. .+++|| |+|||+||||||||||+||++||++||+|||||||||++|++++|+++|+++|
T Consensus 50 fi~~ii~~dl~~g~~~----~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL 125 (851)
T 2hz7_A 50 FITEIIERDLEAGKYP----RVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDL 125 (851)
T ss_dssp HHHHHHHHHHHTTSCS----SCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcC----ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHH
Confidence 4778889999998875 578888 59999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH
Q psy16872 129 KWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI 208 (605)
Q Consensus 129 ~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~ 208 (605)
+||||+||++ ||+||+|++.|+++|++||++|+||+||||+++|++.|..+ ..++|+++||+++.+|.
T Consensus 126 ~wLGl~wde~--------~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~----~~~G~~s~~R~ls~ee~ 193 (851)
T 2hz7_A 126 KWLGLDWGEH--------FYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNA----TTPGTPSPYRDRSVEEN 193 (851)
T ss_dssp HHHTCCCTTC--------EEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBT----TBCCCCCTTTTCCHHHH
T ss_pred HHcCCCCCCC--------cccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcch----hccCCCcccccCCHHHH
Confidence 9999999985 69999999999999999999999999999999998776322 23678888999999876
Q ss_pred H---HHHhcCC----CceEEEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEc
Q psy16872 209 D---EKLKENS----KYCIRFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLR 279 (605)
Q Consensus 209 ~---~~~~~g~----~~~iR~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIR 279 (605)
. ++|.+|. ++|||+|++. ....+.|.|.+++....+...+|.+ .|+||||||||||||+||||||||
T Consensus 194 l~~fe~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w----~g~PtYhfA~vVDD~~~GITHViR 269 (851)
T 2hz7_A 194 LDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW----HIYPAYDFEHPLQDAIEGVTHSMC 269 (851)
T ss_dssp HHHHHHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC----SEEECHHHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC----ccccccceeeEeeeccCCcceeec
Confidence 4 6788886 8999999874 3456778777777655444456644 589999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHcCCCC-C---cEEEecceecCCCccccccCC----------------CCChHHHHHcCCCHHH
Q psy16872 280 GVEWQISTTKHILIYKAFGWTP-P---KFAHLPLLLNLNGSKLSKRQG----------------DMSVEAIRNSEFLPNA 339 (605)
Q Consensus 280 G~d~l~stpkqi~ly~alG~~~-P---~f~H~plil~~dg~KLSKR~g----------------~~sv~~~r~~G~~PeA 339 (605)
|+||++|||+|++||+||||+. | .|+|+ +.+|+|||||+| .+||.+||++||+|+|
T Consensus 270 G~D~~~n~~~q~~l~~alG~~~~P~~~~fahL----n~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeA 345 (851)
T 2hz7_A 270 SLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRR----GLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEA 345 (851)
T ss_dssp EGGGTTTHHHHHHHHHHTTCSSCCEEEEECCE----EETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHH
T ss_pred chhhhhChHHHHHHHHHcCCCCCCCceEEEEe----cCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHH
Confidence 9999999999999999999986 8 47774 558999999995 3689999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccccccccc-ccCCCCCCchhhh
Q psy16872 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLV-NENSCKVDLTNLN 418 (605)
Q Consensus 340 l~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i-~~~~a~fd~~KL~ 418 (605)
|+|||+++||+.. ....++++++.+++ |+++++ ++++++||+.||.
T Consensus 346 Ir~fl~~lG~s~~----~~~~e~~~le~~~r-----------------------------~~l~~~~~r~~av~d~~Kl~ 392 (851)
T 2hz7_A 346 VRAFAAQIGVSRT----NRTVDIAVYENAVR-----------------------------DDLNHRAPRVMAVLDPVKVT 392 (851)
T ss_dssp HHHHHHHSCCCSS----CEEECHHHHHHHHH-----------------------------HHHHTTCCEECEESSEEEEE
T ss_pred HHHHHHhcCCCCC----cccccHHHHHHHHH-----------------------------hcccccccccceEecceeEE
Confidence 9999999998862 22246777775555 777774 6888888888888
Q ss_pred hhhH
Q psy16872 419 EFNR 422 (605)
Q Consensus 419 ~~N~ 422 (605)
|+|-
T Consensus 393 ~~N~ 396 (851)
T 2hz7_A 393 LTNL 396 (851)
T ss_dssp ETTC
T ss_pred EecC
Confidence 8884
No 12
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.1e-74 Score=633.02 Aligned_cols=305 Identities=26% Similarity=0.424 Sum_probs=240.4
Q ss_pred CceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.+++|| |||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||||+||+. |
T Consensus 96 ~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~---------~ 166 (553)
T 3aii_A 96 EVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDET---------V 166 (553)
T ss_dssp CCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEE---------E
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCC---------c
Confidence 456777 488899999999999999999999999999999999999999999999999999999999963 7
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhcCCC--ceEEEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKENSK--YCIRFK 223 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~g~~--~~iR~k 223 (605)
+||+|++.|+++|++|+++|+||+||||++++++.|.. +++++||+++.+|.. +.|.+|.+ +|||+|
T Consensus 167 ~qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~--------g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k 238 (553)
T 3aii_A 167 IQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNR--------GEACHCRSLGFRENLQRWREMFEMKEGSAVVRVK 238 (553)
T ss_dssp EGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHT--------TCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEEC
T ss_pred ccccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhc--------CCCCccccCCHHHHHHHHHHHhcCCcCceEEEEE
Confidence 99999999999999999999999999999999876632 367899999999764 36777854 899999
Q ss_pred cCCC--ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCC
Q psy16872 224 LTNH--TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTP 301 (605)
Q Consensus 224 ~~~~--~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~ 301 (605)
++.. +..+.|.|..++....+...||.+ -|+|||||||+||||+|||||||||+||++|||+|++||++|||+.
T Consensus 239 ~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~----~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~ 314 (553)
T 3aii_A 239 TDLNHPNPAIRDWVSMRIVEAEHPRTGTRY----RVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEP 314 (553)
T ss_dssp CCTTCSSGGGTTCEEEEECCSCBTTTBTSC----CEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCC
T ss_pred cccccCCCCCCCcEEEEecCCCCCccCCCc----eeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCC
Confidence 8643 223334433333221111122211 1699999999999999999999999999999999999999999999
Q ss_pred CcEEEecceecCCCccccccCC----------------CCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCH
Q psy16872 302 PKFAHLPLLLNLNGSKLSKRQG----------------DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM 365 (605)
Q Consensus 302 P~f~H~plil~~dg~KLSKR~g----------------~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~ 365 (605)
|.|.|+|+| +.+|+|||||+| ..||.+||++||+|+||+|||+++||+. .+..||+
T Consensus 315 P~y~H~~~L-~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~-------~~~~~s~ 386 (553)
T 3aii_A 315 PEFIHYGRL-KMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKI-------ADSTMSW 386 (553)
T ss_dssp CEEECCCCB-C-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCS-------SCBCCCH
T ss_pred CeEEEeeEE-ecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCC-------ccccccH
Confidence 999999985 789999999987 4689999999999999999999999765 3467777
Q ss_pred HHHHH---Hhccc------cccccccccccccccccccccccccccccc
Q psy16872 366 KDLVE---KVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLV 405 (605)
Q Consensus 366 eeli~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i 405 (605)
+.|.. ++|+. ||.+||||+|+|+|. .+++...+++++-
T Consensus 387 ~~L~~~~r~~l~~~a~R~~~V~~p~kv~i~n~~~--~~~~~~p~hp~~~ 433 (553)
T 3aii_A 387 KKIYGLNRSILEEEARRYFFAADPVKLEVVGLPG--PVRVERPLHPDHP 433 (553)
T ss_dssp HHHHHHHHHHHTTTCEEECEEESEEEEEEETCCS--CEEEEEESCTTCG
T ss_pred HHHHHHHHHHhhccChhhhhccCcEEEEEeCCCC--ceEEEecCCCCCC
Confidence 76644 45554 799999999999982 1444445555443
No 13
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=2e-61 Score=537.30 Aligned_cols=425 Identities=16% Similarity=0.212 Sum_probs=304.6
Q ss_pred ecCCCCcCChhhHHHHHHHHHHH-----HHcCCeEEEeccCCCCCCCc------------------------------HH
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFA-----KSHNGSFILRIEDTDQTRFV------------------------------PE 119 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~A-----r~~~G~fiLRiEDTD~~R~~------------------------------~~ 119 (605)
.|+|||++||||+||||+||++| +.++|+|++||||||+.|.+ +.
T Consensus 27 gPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~~~~~~ 106 (523)
T 1irx_A 27 GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEH 106 (523)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSSSHHHH
T ss_pred CCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHHHHHHH
Confidence 58999999999999999997775 56889999999999976655 34
Q ss_pred HHHHHHHHHHHcCCCCCCCccCCCccCcccccc-cHH-HHHHHHHHHHHCC-CEeeeCCCHHHHHHHHH----HHHhCCC
Q psy16872 120 AVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK-RLA-LYQKEVQTLLHNG-SAYKCFCSDSRLNLIRK----DAVKSGL 192 (605)
Q Consensus 120 ~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSe-r~~-~Y~~~a~~Li~~G-~AY~Cfcs~e~l~~~r~----~~~~~~~ 192 (605)
+++.|.++|+||||+||. |+||+ |.+ .|++++++|+++| .+|.|++. .|. .+-..+-
T Consensus 107 ~~~~~~~~l~~Lgi~~D~----------~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~------~~g~~~~~~y~~~~ 170 (523)
T 1irx_A 107 FMRKFEEEVEKLGIEVDL----------LYASELYKRGEYSEEIRLAFEKRDKIMEILNK------YREIAKQPPLPENW 170 (523)
T ss_dssp HHHHHHHHHHTTTCCCEE----------EEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHH------HHHHTTCCCCCTTC
T ss_pred HHHHHHHHHHHcCCCceE----------EechhhccchHHHHHHHHHHHchHHHHHHHHh------hccccccccccCCc
Confidence 999999999999999986 69999 999 9999999999999 88877632 121 0101111
Q ss_pred CC--CCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhh
Q psy16872 193 VP--KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDH 270 (605)
Q Consensus 193 ~~--~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~ 270 (605)
.+ .|+..|+.++.+ + ...+. .++||++..+.+.|.|++.|+....++- |. |+|+|+|+++||
T Consensus 171 ~~~~~~~~~~~~~~~~-~---~~~~~-~~~~f~~~~g~~~~~d~~~G~g~~~w~~---d~------~~~~~~l~~~vd-- 234 (523)
T 1irx_A 171 WPAMVYCPEHRREAEI-I---EWDGG-WKVKYKCPEGHEGWVDIRSGNVKLRWRV---DW------PMRWSHFGVDFE-- 234 (523)
T ss_dssp CSEEEECTTTCCEECE-E---EECSS-SCEEECCSSSCCCEECTTSSCEEECHHH---HH------HHHHHHSCCCBC--
T ss_pred eeccccchhhCCcccc-c---ccCCC-CceeeeecCCCccccCCcCCCCCCCCCc---ch------HhhHHHcCCCCc--
Confidence 12 466778776422 1 01122 5689999767788999996654433211 32 799999999997
Q ss_pred cCCcceEEcC--CCCcccHHHHHHHHHHcCCCCCcEEEecceecC-CCccccccCCCC-ChHHHHHcCCCHHHHHHHHHH
Q psy16872 271 HMNISHVLRG--VEWQISTTKHILIYKAFGWTPPKFAHLPLLLNL-NGSKLSKRQGDM-SVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 271 ~m~ITHVIRG--~d~l~stpkqi~ly~alG~~~P~f~H~plil~~-dg~KLSKR~g~~-sv~~~r~~G~~PeAl~nfla~ 346 (605)
.||++|+.+| .||. .++++ +||||++|.|+|+|+|++. +|+|||||+|++ ++.++++. |.|+|++||+++
T Consensus 235 ~~G~Dh~~~h~s~~~~----~~i~~-~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTG----KEIIK-EVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHH----HHHHH-HHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhH----HHHHH-HHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHHHHHHHh
Confidence 8899988876 4443 23332 7999999999999999988 799999999985 99999999 999999999998
Q ss_pred hcCCCCCCCCCCccccCCHH-HHHHHhcccccccccccccccccccccccccccc-cccccccCCCCCCch--hhhhhhH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMK-DLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEF-DLQLVNENSCKVDLT--NLNEFNR 422 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~e-eli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F-~~~~i~~~~a~fd~~--KL~~~N~ 422 (605)
.|| +.+..||.+ +|.+ .+ .+++++++.+.+|.+ ||.|+|+
T Consensus 309 ~~~--------~~~~~fs~~~~l~~----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~n~ 352 (523)
T 1irx_A 309 HRP--------NKEIKIDLGLGILN----------------------------LYDEFEKVERIYFGVEGGKGDDEELRR 352 (523)
T ss_dssp SCT--------TSCEEECCSTTHHH----------------------------HHHHHHHHHHHHTTSCC-----CHHHH
T ss_pred cCC--------CCCceeCcchhHHH----------------------------HHHHHHHHHHHHhcccccchhhhhhcc
Confidence 764 235667766 5555 33 346777766666665 6999999
Q ss_pred HH-HHhh-ccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHH--------hhccccchHhhhhhhhhccccC
Q psy16872 423 AE-IRRV-MSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCW--------ASERIFKLQDLVGKDFAFIWVK 492 (605)
Q Consensus 423 ~~-i~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l--------~~~ri~~l~dl~~~~~~ff~~~ 492 (605)
+| |+++ +.++.. ..++... +..... ....+.+++.+++.. .++|+.+|.|+++. ..|||..
T Consensus 353 ~~~i~~~~~~~~~~----~~~p~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~~~~ 423 (523)
T 1irx_A 353 TYELSMPKKPERLV----AQAPFRF--LAVLVQ--LPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINL-ARNWVKK 423 (523)
T ss_dssp HHHHHCSSCCCCCC----CCCCHHH--HHHHTT--CTTCCHHHHHHHHHHTTSSCSSCCHHHHHHHHHHHHH-HHHHHHH
T ss_pred eeEeeccCCCCCCC----CCCCHHH--HHHHHh--hcCCCHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHH-HHHHHHH
Confidence 99 9985 332200 1111110 111110 011346789999999 99999999999998 5566644
Q ss_pred CC-----c--Ccc-CCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHHHHHhC
Q psy16872 493 PS-----I--EHL-SQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSG 564 (605)
Q Consensus 493 p~-----~--~~~-~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG 564 (605)
+. + .+. ..+.+. .....+|+++++.|++.++|+.++|++.++++++++|+|++++|||||+||||
T Consensus 424 ~~~~~~~~~~~~~~~~~~l~-------~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~~~g~k~~~lf~plR~altG 496 (523)
T 1irx_A 424 YAPEDVKFSILEKPPEVEVS-------EDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFSTLYRLFIG 496 (523)
T ss_dssp TSCGGGCCCCCSSCCCCCCC-------HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTCBHHHHHHHHHHHHHS
T ss_pred hCchhheecccccccccCCC-------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 32 1 111 111121 13445666666677666569999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 565 LKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 565 ~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
+.+||+|+++|++|||+++++||++
T Consensus 497 ~~~gP~l~~~l~lLGke~~l~Rl~~ 521 (523)
T 1irx_A 497 KERGPRLASFLASLDRSFVIKRLRL 521 (523)
T ss_dssp SSSCSCHHHHHHTSCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHhCHHHHHHHHHh
Confidence 9999999999999999999999975
No 14
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.91 E-value=8.2e-24 Score=231.75 Aligned_cols=241 Identities=19% Similarity=0.290 Sum_probs=175.6
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC---CC----------cHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT---RF----------VPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~---R~----------~~~~~~~I~~~L 128 (605)
.+|+.| |+|+|++||||+|+++..+.+||- ++..|+.+|+|+|.+ |. .+.+.+.+.+++
T Consensus 21 ~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 21 GEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp TEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 567777 577799999999999999999995 456999999999974 22 568899999999
Q ss_pred HHcCCCC-CCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeee------CCCHHHHHHHHHHHHhCCCCCCCCCcCc
Q psy16872 129 KWIGVVP-DESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKC------FCSDSRLNLIRKDAVKSGLVPKYDNKCR 201 (605)
Q Consensus 129 ~wlGl~~-De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C------fcs~e~l~~~r~~~~~~~~~~~Y~~~cr 201 (605)
+||||.+ |.. .++|++.+.+++++++|+++|+||.+ ||.++ .+.|...|.
T Consensus 101 ~~LgI~~~d~~---------~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~--------------~~~yg~lsg 157 (461)
T 1li5_A 101 DALNILRPDME---------PRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT--------------DPTYGVLSR 157 (461)
T ss_dssp HHTTCCCCSBC---------CBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG--------------CTTTTTTTT
T ss_pred HHcCCCCCccc---------ccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc--------------ccccccccC
Confidence 9999998 543 37899999999999999999999986 88753 134544453
Q ss_pred CCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec--C-----------Ccccchhhhhh-
Q psy16872 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS--D-----------GFPTYHFANVV- 267 (605)
Q Consensus 202 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks--D-----------G~PtY~fA~vV- 267 (605)
. +.++ +.+|. |+.+.. .+..+.||++||+ + |.|.||.+|++
T Consensus 158 ~-~~~~----l~~g~----rv~~~~----------------~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam 212 (461)
T 1li5_A 158 Q-DLDQ----LQAGA----RVDVVD----------------DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAM 212 (461)
T ss_dssp C-----------------------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHH
T ss_pred C-CHHH----hhcCC----cccchh----------------cccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHH
Confidence 2 2222 22332 111110 0223457787775 2 55778888875
Q ss_pred hhhcCCcceEEc--CCC----CcccHHHHHHHHHHcCCCCCc-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHH
Q psy16872 268 DDHHMNISHVLR--GVE----WQISTTKHILIYKAFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNA 339 (605)
Q Consensus 268 DD~~m~ITHVIR--G~d----~l~stpkqi~ly~alG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeA 339 (605)
.....|.++.|. |.| |+.+.+.|... ++|++.|. +.|.+++. .+|+|||||.|+ +++.++.+. |.|++
T Consensus 213 ~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a--~~g~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~-~g~da 288 (461)
T 1li5_A 213 NCKQLGNHFDIHGGGSDLMFPHHENEIAQSTC--AHDGQYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKY-YDAET 288 (461)
T ss_dssp HHHHHCSSEEEEECBGGGTTTHHHHHHHHHHH--HSSSCCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTT-SCHHH
T ss_pred HHHHhCCCceEEeccCccCchHHHHHHHHHHH--hcCCCCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhh-CCHHH
Confidence 344456787787 999 55566666533 36887664 78888854 489999999998 799999998 99999
Q ss_pred HHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 340 l~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|.|++. + ++ ..+..||.+.|.+
T Consensus 289 lR~~ll~-~-~~------~~~~~fs~~~l~~ 311 (461)
T 1li5_A 289 VRYFLMS-G-HY------RSQLNYSEENLKQ 311 (461)
T ss_dssp HHHHHHS-S-CT------TSCEEECHHHHHH
T ss_pred HHHHHHc-C-Cc------CCCCCCCHHHHHH
Confidence 9999986 3 33 5677899998887
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.88 E-value=2e-22 Score=222.30 Aligned_cols=263 Identities=16% Similarity=0.226 Sum_probs=174.3
Q ss_pred ecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCCCCC
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGVVPD 136 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl~~D 136 (605)
.|+|||.|||||+|++++.+.+||.+ .|..++++.+|| +.....++++.+.++++|||++||
T Consensus 13 ~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d 92 (497)
T 2csx_A 13 IYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFLKIEYT 92 (497)
T ss_dssp EEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 36899999999999999999999954 999999999999 566778999999999999999999
Q ss_pred CCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH
Q psy16872 137 ESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID 209 (605)
Q Consensus 137 e~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~ 209 (605)
. +|++|+ +.+.++++.++|.++|++|.| +|...+... ...+.. ..+.|.. +...++
T Consensus 93 ~---------~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~-~~~~~~------~~~~c~~-~~~~~~ 155 (497)
T 2csx_A 93 K---------FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFK-SEAELA------EDHTCPI-HQKKCE 155 (497)
T ss_dssp E---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------------
T ss_pred C---------CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEc-cHHHhc------cCCCCCC-CCCCCe
Confidence 6 367887 999999999999999999998 787654321 111000 0134421 111111
Q ss_pred HHHhcCCCceEEEEcCCCccceecc-------c-----ccee-eecCCCCCCCcEEEe--cC---Cc--c---cch----
Q psy16872 210 EKLKENSKYCIRFKLTNHTESWQDL-------V-----YGDI-SYNVFHNEGDPVIIK--SD---GF--P---TYH---- 262 (605)
Q Consensus 210 ~~~~~g~~~~iR~k~~~~~~~~~D~-------v-----~G~i-~~~~~~~~~D~Vi~k--sD---G~--P---tY~---- 262 (605)
. -....+.||++.-.....+. + ...+ .+- .....|..|.| ++ |. | .++
T Consensus 156 ~----~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l-~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW 230 (497)
T 2csx_A 156 Y----IKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFV-KQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVW 230 (497)
T ss_dssp ------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHH-HHCCCCEECEEETTTCCSSEEETTEEEEEECSH
T ss_pred E----EecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHH-hcCCccccccccCCCCCCceecCCCCCceEEEe
Confidence 1 12346777765310000000 0 0000 000 11246888888 54 54 3 344
Q ss_pred ------hhhhhhh---hcCCcceEEcCCCCcccHHHHH---HHHHHcCCCCCc-EEEecceecCCCccccccCCC-CChH
Q psy16872 263 ------FANVVDD---HHMNISHVLRGVEWQISTTKHI---LIYKAFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVE 328 (605)
Q Consensus 263 ------fA~vVDD---~~m~ITHVIRG~d~l~stpkqi---~ly~alG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~ 328 (605)
+++++.| ....+++.+.|.|++. +++. ....++|+++|. +.|+++++. +|+|||||.|+ +++.
T Consensus 231 ~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~--~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~ 307 (497)
T 2csx_A 231 FDALFNYISALEDKVEIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPY 307 (497)
T ss_dssp HHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEES-SSSBCCTTTTCCCCHH
T ss_pred cccchhhcccCCCcchhhCCceEEEeecchhH--hHHHHHHHHHHHcCCCCCcEEEECcEEEe-CCceeCCcCCCCCCHH
Confidence 2555544 2337788889999986 3332 234578998885 888898666 99999999998 6899
Q ss_pred HHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 329 AIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 329 ~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++.+. |.|+|+|.|++..+ .+ ..+..||.+.+.+
T Consensus 308 dli~~-~g~DalR~~ll~~~-~~------~~d~~fs~~~l~~ 341 (497)
T 2csx_A 308 EVVQE-YGLDEVRYFLLREV-PF------GQDGDFSKKAILN 341 (497)
T ss_dssp HHHHH-HCHHHHHHHHHHSS-CT------TSCEECCHHHHHH
T ss_pred HHHHH-CCcHHHHHHHHhcC-Cc------ccCCCCChHHHHH
Confidence 99986 99999999999865 22 5677899999877
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.88 E-value=5.4e-22 Score=216.73 Aligned_cols=243 Identities=20% Similarity=0.258 Sum_probs=171.9
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC-------------CCcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT-------------RFVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~-------------R~~~~~~~~I~~~ 127 (605)
+.+|+.| |+|+|++||||+|+++....++|- ++..|+..++|+|.+ ..+..+++.+.++
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3678888 699999999999999998888774 456999999999974 2356889999999
Q ss_pred HHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee------eCCCHHHHHHHHHHHHhCCCCCCCCCcCc
Q psy16872 128 LKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK------CFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201 (605)
Q Consensus 128 L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~------Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr 201 (605)
+++||+.+|... | +.|++.+...+++++|+++|+||. +||.+. .+.|...++
T Consensus 103 ~~~LgI~~d~~~-------p-raTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~--------------~~~yg~Ls~ 160 (462)
T 3tqo_A 103 EKALRVLSPDQE-------P-RATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR--------------FKDYGKLSH 160 (462)
T ss_dssp HHHHTCCCCSBC-------C-BGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT--------------CTTTTTTTT
T ss_pred HHHcCCCCCccc-------c-ChhhHHHHHHHHHHHHHHCCCEEEecCCcEEecccc--------------ccccccccC
Confidence 999999997641 2 678999999999999999999994 678742 244543332
Q ss_pred CCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhhhh
Q psy16872 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANVVD 268 (605)
Q Consensus 202 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~vVD 268 (605)
.+.++ +..|. |..+.. .+..+.||+|||. .|.|.||+.|++.
T Consensus 161 -~~~~~----~~~g~----r~~~~~----------------~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam 215 (462)
T 3tqo_A 161 -RHLDE----LQAGA----RVEVSD----------------SKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAM 215 (462)
T ss_dssp -CSCC------------------------------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHH
T ss_pred -CChHH----hhccC----cccccc----------------ccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHH
Confidence 12221 22232 222111 1344679999984 6889999999874
Q ss_pred h--hc-CCcceEEcCCCCcccHHHHH---HHHH-HcCCCCCc-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHH
Q psy16872 269 D--HH-MNISHVLRGVEWQISTTKHI---LIYK-AFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNA 339 (605)
Q Consensus 269 D--~~-m~ITHVIRG~d~l~stpkqi---~ly~-alG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeA 339 (605)
. ++ ..|+-..-|.|++. |.|. +..+ +.|.+.+. |.|..+ ++.+|+|||||.|+ +++.++.+. |.|++
T Consensus 216 ~~~~lG~~~dih~gG~Dl~F--pHheneiaqs~a~~g~p~~~~w~H~g~-v~~~G~KMSKSlGN~i~~~dll~~-~g~da 291 (462)
T 3tqo_A 216 SSSILGQPFDIHGGGLDLKF--PHHENEIAQSEAGEEKPFVKLWMHAGL-LEINKEKMSKSLGNIISIREALKE-SDVEV 291 (462)
T ss_dssp HHHHHCSSEEEEEEEGGGTT--THHHHHHHHHHHHHSSCCEEEEEEECC-EEETTEECCTTTTCCCBHHHHHHH-SCHHH
T ss_pred HHHhcCCCeEEEcccccccc--HHHHhHHHHHHHHcCCCcceEEEEccE-EecCCcCccccCCCcccHHHHHhh-cChHH
Confidence 3 22 23444446777664 4442 2223 34764455 466555 77899999999998 799999987 99999
Q ss_pred HHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 340 l~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|.|++... + ..+..||.+.|.+
T Consensus 292 lR~~lls~~--y------r~~l~fs~~~l~~ 314 (462)
T 3tqo_A 292 LRYFLLSGH--Y------RNPLSYSKENLEN 314 (462)
T ss_dssp HHHHHHHSC--T------TSCEEECHHHHHH
T ss_pred hhhhhccCC--C------CCCcCcCHHHHHH
Confidence 999998643 4 4567789888776
No 17
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.86 E-value=1.6e-21 Score=215.04 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=175.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS--HNGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~--~~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+|++++.+.+||. ..|..++++.+|| +......+.+.+.++|++||+.||.
T Consensus 12 py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d~ 91 (500)
T 2d5b_A 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDD 91 (500)
T ss_dssp EETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcCCC
Confidence 588999999999999999999995 5899999999999 5556778999999999999999996
Q ss_pred CccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHH
Q psy16872 138 SETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDE 210 (605)
Q Consensus 138 ~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~ 210 (605)
. |++|+ +.+..+++.++|.++|.+|.+ +|...+-- ...+. .-+|.|..
T Consensus 92 ~---------~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~------~~~~~--l~~g~c~~-------- 146 (500)
T 2d5b_A 92 F---------IRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERF------YTEKE--LVEGLCPI-------- 146 (500)
T ss_dssp E---------EETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEE------CCTTT--SBTTBCTT--------
T ss_pred C---------cccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcc------cCchh--ccCCcCCC--------
Confidence 3 56777 889999999999999999987 34332100 00000 01234521
Q ss_pred HHhcCCCc------eEEEEcCCCccceecccc-------ceeeec---------CCCCCCCcEEEe--cC---Cc--c--
Q psy16872 211 KLKENSKY------CIRFKLTNHTESWQDLVY-------GDISYN---------VFHNEGDPVIIK--SD---GF--P-- 259 (605)
Q Consensus 211 ~~~~g~~~------~iR~k~~~~~~~~~D~v~-------G~i~~~---------~~~~~~D~Vi~k--sD---G~--P-- 259 (605)
.|.+. .+-||++. +.|.+. ..+... ......|..|.| ++ |. |
T Consensus 147 ---~~~~v~~~~~~~wf~~l~~----~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~ 219 (500)
T 2d5b_A 147 ---HGRPVERRKEGNYFFRMEK----YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD 219 (500)
T ss_dssp ---TCSBCEEEEEEEEEECGGG----GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTE
T ss_pred ---CCCeeeEEecCceEEEcHH----HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCC
Confidence 12222 23344431 111100 000000 012346888888 44 54 4
Q ss_pred -------------------cchhhhhhhhhcCCcceEEcCCCCcccHHHHH---HHHHHcCCCCCc-EEEecceecCCCc
Q psy16872 260 -------------------TYHFANVVDDHHMNISHVLRGVEWQISTTKHI---LIYKAFGWTPPK-FAHLPLLLNLNGS 316 (605)
Q Consensus 260 -------------------tY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi---~ly~alG~~~P~-f~H~plil~~dg~ 316 (605)
.|+..+..+++. +.+..+.|.||+. +++. .+..++|+++|. +.|+++++..+|+
T Consensus 220 ~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~ 296 (500)
T 2d5b_A 220 ENHVTFVWFDALLNYVSALDYPEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGR 296 (500)
T ss_dssp EEEEECHHHHHHTHHHHTTTTTTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSS
T ss_pred CCCeeEEccccchhhHHHcCCCCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCC
Confidence 255444344443 5577778999986 5553 345678998886 7888998888999
Q ss_pred cccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 317 KLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 317 KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|||||.|+ +++.++.+. |.|+|+|.|++..+ .+ ..+..||.+.+.+
T Consensus 297 KMSKS~GN~i~p~d~i~~-~g~DalR~~ll~~~-~~------~~d~~fs~~~~~~ 343 (500)
T 2d5b_A 297 KMSKTLGNVVDPFALLEK-YGRDALRYYLLREI-PY------GQDTPVSEEALRT 343 (500)
T ss_dssp CCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHS-CT------TSCEECCHHHHHH
T ss_pred cccccCCCCCCHHHHHHh-cCcHHHHHHHHhcC-Cc------ccCCCCCHHHHHH
Confidence 99999998 689999986 99999999999865 23 4677899999887
No 18
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.86 E-value=4.9e-22 Score=223.86 Aligned_cols=251 Identities=17% Similarity=0.133 Sum_probs=181.8
Q ss_pred eeEe--cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCC--------------------------------
Q psy16872 72 LKHF--LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTD-------------------------------- 112 (605)
Q Consensus 72 v~~f--p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD-------------------------------- 112 (605)
+..| |+|+|++||||+|++++-..+||-. .| .++--|.|.+
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~ 185 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYV 185 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHH
Confidence 3444 6888999999999999988888753 34 4444455553
Q ss_pred --------------------------CCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccccccc--HHHHHHHHHHH
Q psy16872 113 --------------------------QTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKR--LALYQKEVQTL 164 (605)
Q Consensus 113 --------------------------~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer--~~~Y~~~a~~L 164 (605)
..+.+..+.+.+.++++||||+||..+ +.|+. .+.+.+++++|
T Consensus 186 ~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~~---------~es~~~~~~~v~~~~~~L 256 (592)
T 1iq0_A 186 RLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLV---------WESDIVRAGLLQKALALL 256 (592)
T ss_dssp HHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEE---------EHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEec---------cCCcccccchHHHHHHHH
Confidence 023345567789999999999998742 45655 66889999999
Q ss_pred HHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCC
Q psy16872 165 LHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVF 244 (605)
Q Consensus 165 i~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~ 244 (605)
.++|++|+| + .| .|+|. .+ ++++. | |. .
T Consensus 257 ~~kG~~y~~--~-------------~g---~~~G~------------------~~--~~~~~----~-----g~-----~ 284 (592)
T 1iq0_A 257 EQSPHVFRP--R-------------EG---KYAGA------------------LV--MDASP----V-----IP-----G 284 (592)
T ss_dssp TTSTTEECC--S-------------SS---TTTTC------------------EE--EECTT----T-----SC-----S
T ss_pred HHCCCcccC--c-------------cc---CcCCC------------------EE--Eechh----c-----CC-----C
Confidence 999999987 1 11 23321 12 23321 1 10 1
Q ss_pred CCCCCcEEEecCCcccchh---hhhhh------hh-cC----------------------CcceE--EcCCCCcccHHHH
Q psy16872 245 HNEGDPVIIKSDGFPTYHF---ANVVD------DH-HM----------------------NISHV--LRGVEWQISTTKH 290 (605)
Q Consensus 245 ~~~~D~Vi~ksDG~PtY~f---A~vVD------D~-~m----------------------~ITHV--IRG~d~l~stpkq 290 (605)
...++.|+.|+||.|||.+ |.+++ |+ .. +.+|| |.|.||....+++
T Consensus 285 ~~l~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~ 364 (592)
T 1iq0_A 285 LEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV 364 (592)
T ss_dssp CSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH
T ss_pred CCCCceEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHH
Confidence 1235689999999999987 55665 22 21 78888 5999999999999
Q ss_pred HHHHHHcCCCCC--cEEEec--ceecCCCccccccCCCC-ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCH
Q psy16872 291 ILIYKAFGWTPP--KFAHLP--LLLNLNGSKLSKRQGDM-SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM 365 (605)
Q Consensus 291 i~ly~alG~~~P--~f~H~p--lil~~dg~KLSKR~g~~-sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~ 365 (605)
..+++++||+.| .+.|++ ++. .+|+|||||.|++ ++.++.++|+ +++.+++...++++ ++.+ ..
T Consensus 365 ~~~~~alG~~~~~~~~~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~--~~~~~~~~~~~~~~------~~~e--~~ 433 (592)
T 1iq0_A 365 RAALALAGYPALAEKAHHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEAT--RRARAIVEEKNPDH------PDKE--EA 433 (592)
T ss_dssp HHHHHHTTCHHHHTTEEEEEECCEE-ETTBCSCC----CCBHHHHHHHHH--HHHHHHHHHHCTTC------SCHH--HH
T ss_pred HHHHHHcCCCCCCCcEEEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHH--HHHHHHHHhhCCCC------CcHH--HH
Confidence 999999999753 689985 454 5788999999985 8999999988 89999999998765 2222 34
Q ss_pred HH-----HHHHhcccccccccccccccccccccccccccccccccccCCCCCCchhhhhhhH
Q psy16872 366 KD-----LVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNR 422 (605)
Q Consensus 366 ee-----li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~ 422 (605)
.+ .++ .|.+.+...++..||.+++.++|+
T Consensus 434 a~~vg~~aiR----------------------------yf~L~~~~~~~~~Fd~d~~~~~~~ 467 (592)
T 1iq0_A 434 ARMVALGAIR----------------------------FSMVKTEPKKQIDFRYQEALSFEG 467 (592)
T ss_dssp HHHHHHHHHH----------------------------HHHHHSCTTSCEEECHHHHHCSSS
T ss_pred HHhhcHHHHH----------------------------HHHHhcCCCCCCeecHHHHHHHhc
Confidence 43 334 889999999999999999999986
No 19
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.84 E-value=6.6e-21 Score=206.08 Aligned_cols=245 Identities=17% Similarity=0.215 Sum_probs=158.0
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC-------------CCcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT-------------RFVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~-------------R~~~~~~~~I~~~ 127 (605)
+.+|+.| |+|+|++||||+|+++....+||- ++..|+..++|.|.+ .....+.+.+.++
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~ 116 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFRED 116 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4567777 688899999999999999999987 667999999999864 1246788999999
Q ss_pred HHHcCCC-CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCC----CCCCCC--cC
Q psy16872 128 LKWIGVV-PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGL----VPKYDN--KC 200 (605)
Q Consensus 128 L~wlGl~-~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~----~~~Y~~--~c 200 (605)
|++|||. +|..+ +.|++.+.+++++++|+++|.+|.+.|+. .|. ...|.. ..
T Consensus 117 ~~~Lgi~~~d~~~---------r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~------------e~~~~f~~~~~~~~g~l 175 (414)
T 3c8z_A 117 MAALRVLPPHDYV---------AATDAIAEVVEMVEKLLASGAAYIVEDAE------------YPDVYFRADATAQFGYE 175 (414)
T ss_dssp HHHTTCCCCSEEE---------EGGGCHHHHHHHHHHHHHHTSEEECSCSS------------CCCEEECTTSSTTTTTT
T ss_pred HHHcCCCCCccee---------cccchHHHHHHHHHHHHHCCCEEeccCCc------------CCCEEEEchhhhhhHhh
Confidence 9999998 88653 56789999999999999999999876541 011 112211 11
Q ss_pred cCCCHHHHHHHHhc--CCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEe-------------cCCcccchhhh
Q psy16872 201 RNLTQEQIDEKLKE--NSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIK-------------SDGFPTYHFAN 265 (605)
Q Consensus 201 r~ls~~e~~~~~~~--g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~k-------------sDG~PtY~fA~ 265 (605)
.+...+++...+.+ +... .. .+....|+++|| ..|+|.||..|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~------~~----------------~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec 233 (414)
T 3c8z_A 176 SGYDRDTMLTLFAERGGDPD------RP----------------GKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVEC 233 (414)
T ss_dssp TCCCHHHHHHHHHHTTCCTT------CT----------------TCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHH
T ss_pred cCCCHHHHHHHHhhcccccc------cc----------------ccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchh
Confidence 12344544433211 1110 00 011122333333 23678999877
Q ss_pred ----------hhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHH
Q psy16872 266 ----------VVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRN 332 (605)
Q Consensus 266 ----------vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~ 332 (605)
++|.|.+|++|+. -|+.+.+.|... +.|.++| .+.|..+ ++.+|+|||||.|+ +++.++.+
T Consensus 234 ~a~~~~~~g~~~di~~~G~D~~~---~H~~~~~a~~~a--~~g~~~~~~~~~h~g~-v~~~G~KMSKS~GN~v~~~~ll~ 307 (414)
T 3c8z_A 234 SAIALTRIGTGLDIQGGGSDLIF---PHHEYSAAHAES--VTGERRFARHYVHTGM-IGWDGHKMSKSRGNLVLVSQLRA 307 (414)
T ss_dssp HHHHHHHTCSCEEEEEEEGGGTT---THHHHHHHHHHH--HHCCSCSEEEEEEECC-BC-------------CBHHHHHH
T ss_pred HHHHHHhcCCCceEEEecccccc---HHHHHHHHHHHH--hcCCCCcCeEEEEcCE-EecCCeEcccccCCcCCHHHHhh
Confidence 3555555555543 266666655332 2487554 4788777 45589999999997 79999999
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 333 SEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 333 ~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+||.|+++|.|++. + ++ ..+..||.+.+.+
T Consensus 308 ~g~g~D~lR~~ll~-~-~~------~~d~~fs~~~l~~ 337 (414)
T 3c8z_A 308 QGVDPSAIRLGLFS-G-HY------REDRFWSNEVLDE 337 (414)
T ss_dssp TTCCHHHHHHHHHT-S-CT------TSCBCCCHHHHHH
T ss_pred ccCCcchheeEEEe-c-Cc------CCCCCcCHHHHHH
Confidence 99999999999987 4 33 4667899998887
No 20
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.5e-20 Score=202.03 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=143.1
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCCCCCcHH--------HHHHHHHHHHHcCCCCCCCccCCCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQTRFVPE--------AVEKLEQDLKWIGVVPDESETVGGN 144 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~~R~~~~--------~~~~I~~~L~wlGl~~De~p~~~g~ 144 (605)
.|||.|||||+++|+.+|.+++ .|++++++|.| |+..|...+ +.+.|...|.|+|++||..
T Consensus 47 ~PTG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~------ 119 (394)
T 2dlc_X 47 APTGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKL------ 119 (394)
T ss_dssp CCCSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTTC------
T ss_pred CCCCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhHc------
Confidence 5679999999999999999998 89999999999 875554432 4467788899999999985
Q ss_pred cCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEc
Q psy16872 145 YGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKL 224 (605)
Q Consensus 145 ~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~ 224 (605)
.+|+||++.. +.++++.++ .|.|+||-.++.... . . .+|+
T Consensus 120 -~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~-------~-----------------------~--~~r~-- 159 (394)
T 2dlc_X 120 -KFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAG-------A-----------------------D--VVKQ-- 159 (394)
T ss_dssp -EEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHT-------T-----------------------T--TSCC--
T ss_pred -EEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhccc-------H-----------------------h--hhcc--
Confidence 3689999864 345555555 688999988764210 0 0 0010
Q ss_pred CCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcE
Q psy16872 225 TNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKF 304 (605)
Q Consensus 225 ~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f 304 (605)
. +. -+-|..+|..--+.|...++++||++|+|+..++..++.+++.||+..|.+
T Consensus 160 -------------------~---~~----~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~ 213 (394)
T 2dlc_X 160 -------------------V---AN----PLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAH 213 (394)
T ss_dssp -------------------C---SS----CCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEE
T ss_pred -------------------c---CC----ccceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCCCCCEE
Confidence 0 00 034567888888889999999999999999999999999999999999999
Q ss_pred EEecceecCC-CccccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 305 AHLPLLLNLN-GSKLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 305 ~H~plil~~d-g~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.|.|+|.+.+ |+|||||.++ +.+. =.|+.+...+...
T Consensus 214 l~~pll~gl~~G~KMSKS~~ns~I~L~------D~p~~i~kKI~ka 253 (394)
T 2dlc_X 214 LMNPMVPGLAQGGKMSASDPNSKIDLL------EEPKQVKKKINSA 253 (394)
T ss_dssp EEECCCCCCC----------CCSCBTT------CCHHHHHHHHHHS
T ss_pred EecccccCCCCCCcCCCCCCCCEEecc------CCHHHHHHHHHHh
Confidence 9999999999 9999999886 4443 2599999999874
No 21
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.79 E-value=9.7e-19 Score=192.28 Aligned_cols=242 Identities=20% Similarity=0.309 Sum_probs=153.2
Q ss_pred ceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCC----------CCC---C----------CcHH
Q psy16872 71 KLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDT----------DQT---R----------FVPE 119 (605)
Q Consensus 71 ~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDT----------D~~---R----------~~~~ 119 (605)
+|++| |+|+|++||||+|+++.-.+++|- +...|+..|.|+ |.+ | ....
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 68888 588899999999999988777764 557899999998 443 1 2468
Q ss_pred HHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCC
Q psy16872 120 AVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVP 194 (605)
Q Consensus 120 ~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~ 194 (605)
+++.+.++++.|||.+|... | ..+++.+..++++++|+++|+||. .||... .+
T Consensus 122 ~~~~f~~d~~~Lgi~~d~~~-------~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~--------------f~ 179 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPDKV-------L-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC--------------FK 179 (501)
T ss_dssp HHHHHHHHHHHTTCCCCSEE-------E-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG--------------CT
T ss_pred HHHHHHHHHHHcCCCCCCcc-------c-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc--------------cC
Confidence 89999999999999988632 3 579999999999999999999995 567643 23
Q ss_pred CCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec----------------CCc
Q psy16872 195 KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS----------------DGF 258 (605)
Q Consensus 195 ~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks----------------DG~ 258 (605)
.|-. |+...+.+.+..|. |..+.. .+..+.||++||. .|.
T Consensus 180 ~yG~----ls~~~~~~~~~~g~----r~~~~~----------------~K~~p~Df~lWk~~p~~~~~~~~W~spwG~Gr 235 (501)
T 3sp1_A 180 SYGE----MAGIDLIDKDMTLP----RVDVDK----------------FKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGY 235 (501)
T ss_dssp TTTT----TTC-------------------------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEE
T ss_pred Cccc----cCCCChhhhhccCC----ccCccc----------------ccCCchhhHhcCCCCCCCCCCceecCCCCCCC
Confidence 4532 22222101133332 111110 1233457777764 378
Q ss_pred ccchhhhhhh--hhcC-Ccc-eEEcCCCCcccHHHHH---HHHHHc-CCCCC-cEEEecceecCCCccccccCCC-CChH
Q psy16872 259 PTYHFANVVD--DHHM-NIS-HVLRGVEWQISTTKHI---LIYKAF-GWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVE 328 (605)
Q Consensus 259 PtY~fA~vVD--D~~m-~IT-HVIRG~d~l~stpkqi---~ly~al-G~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~ 328 (605)
|.||..|.+. .++. .++ |+ =|.|++. |.|. +..+|+ |-+.+ .|.|..++ ..+|+||||+.|+ +++.
T Consensus 236 PGWhiEcsam~~~~lg~~~DIH~-gG~DLif--pHheneiAqs~a~~g~~~~~~w~H~g~v-~~~G~KMSKSlGN~it~~ 311 (501)
T 3sp1_A 236 PSWHLECAAMNLEYFKDALDIHL-GGVDHIG--VHHINEIAIAECFLNKKWCDVFVHGEFL-IMDYNKMSKSRGNFITVK 311 (501)
T ss_dssp ECHHHHHHHHHHHHTTTCCCEEE-EEGGGTT--THHHHHHHHHHHHHTSCCCSEEEEECCE-ECC----------CCCHH
T ss_pred CCchHHHHHHHHHHcCCCceEEe-ecccccc--chHHHHHHHHHHccCCCCCeEEEEeeeE-eeCCeEccccCCCcCCHH
Confidence 9999998652 3332 122 33 3677664 4443 223343 53333 47998884 5699999999998 7999
Q ss_pred HHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 329 AIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 329 ~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++.+.||.|+++|.|++.. ++ ..+..||.+.|.+
T Consensus 312 dll~~gyg~d~lR~~lls~--~y------r~~l~fs~~~l~~ 345 (501)
T 3sp1_A 312 DLEDQNFSPLDFRYLCLTS--HY------RNQLKFSLDNLQA 345 (501)
T ss_dssp HHHHTTCCHHHHHHHHHTS--CT------TSCEECCHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhc--cC------CCCCccCHHHHHH
Confidence 9999999999999999764 34 4667888887776
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.77 E-value=1.8e-18 Score=189.43 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=92.3
Q ss_pred CCcEEEecCCcccch---hhhhhhhhcCCcceEE--cCCCCcccHHHHHHHHHHcCCCCCcEEEec--ce-ecCCCc--c
Q psy16872 248 GDPVIIKSDGFPTYH---FANVVDDHHMNISHVL--RGVEWQISTTKHILIYKAFGWTPPKFAHLP--LL-LNLNGS--K 317 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~---fA~vVDD~~m~ITHVI--RG~d~l~stpkqi~ly~alG~~~P~f~H~p--li-l~~dg~--K 317 (605)
.|.||+||||.|||. +|.+++++.++++++| +|.||....+++..+++++||++|.+.|++ ++ ++.+|+ |
T Consensus 206 ~~~vl~ksDG~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~K 285 (464)
T 3fnr_A 206 KDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYK 285 (464)
T ss_dssp SCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECC
T ss_pred CceEEEeCCCceehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccC
Confidence 479999999999998 8899999999999995 999999999999999999999988887766 66 667885 9
Q ss_pred ccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 318 LSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 318 LSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||||.|+ +++.++.++ +.++|++.|++.-. . .++-.|+++.+.+
T Consensus 286 MSKr~Gn~v~l~dll~~-~g~dalRy~~l~~~--~------~~d~~Fd~~~~~~ 330 (464)
T 3fnr_A 286 MSKRAGNFILMSDVVDE-IGSDALRYIFLSKK--C------DTHLEFDISDLQK 330 (464)
T ss_dssp C---CCSSCBHHHHHHH-HCHHHHHHHTTSSC--T------TSCEEEEGGGGGC
T ss_pred CcCcCCCCCCHHHHHhh-ccHHHHHHHHHhcC--C------CCCCccCHHHHHH
Confidence 9999997 599999988 88999999986432 2 3455566655544
No 23
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.71 E-value=9.3e-18 Score=187.79 Aligned_cols=272 Identities=17% Similarity=0.199 Sum_probs=161.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHH--HcCCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAK--SHNGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar--~~~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+|++++.+.+|| ...|.-++.+-.+| +....+.+.+.+.++|++|||+||.
T Consensus 27 py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d~ 106 (560)
T 3h99_A 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDN 106 (560)
T ss_dssp CBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999 44565555444444 4456778899999999999999996
Q ss_pred CccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee-------eCCCHHHHHHHHHHHHhCCCCCCCC------C---c
Q psy16872 138 SETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK-------CFCSDSRLNLIRKDAVKSGLVPKYD------N---K 199 (605)
Q Consensus 138 ~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-------Cfcs~e~l~~~r~~~~~~~~~~~Y~------~---~ 199 (605)
. |+.+ ++.+..+++.++|.++|.+|. |-....-+.. ..-.|.-|.|. . .
T Consensus 107 ~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~----~~v~g~cp~c~~~~~~gd~ce~ 173 (560)
T 3h99_A 107 Y---------HSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPD----RFVKGTCPKCKSPDQYGDNCEV 173 (560)
T ss_dssp E---------EESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCG----GGEEEECTTTCCSSEETTBCTT
T ss_pred c---------eeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecc----hhcCCCCCCCCCcccccchhhh
Confidence 3 2333 455666888999999999993 3211110100 00011122221 1 1
Q ss_pred Cc-CCCHHHHHHH--HhcCCCceE------EEEcCCCccc---------eeccccceeeecCCCCCCCcEEEecC---Cc
Q psy16872 200 CR-NLTQEQIDEK--LKENSKYCI------RFKLTNHTES---------WQDLVYGDISYNVFHNEGDPVIIKSD---GF 258 (605)
Q Consensus 200 cr-~ls~~e~~~~--~~~g~~~~i------R~k~~~~~~~---------~~D~v~G~i~~~~~~~~~D~Vi~ksD---G~ 258 (605)
|. .+.+.+..+. ...|.+.++ .|+++.-... +.+.++..+..-......|..|-|.. |.
T Consensus 174 cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~ 253 (560)
T 3h99_A 174 CGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGF 253 (560)
T ss_dssp TCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSC
T ss_pred ccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCe
Confidence 32 2333221100 012333333 3444321000 00000000000001135688888776 54
Q ss_pred cc----------ch-----hhhhh------------------hhhcCCcceEEcCCCCccc-HHHHHHHHHHcCCCCCc-
Q psy16872 259 PT----------YH-----FANVV------------------DDHHMNISHVLRGVEWQIS-TTKHILIYKAFGWTPPK- 303 (605)
Q Consensus 259 Pt----------Y~-----fA~vV------------------DD~~m~ITHVIRG~d~l~s-tpkqi~ly~alG~~~P~- 303 (605)
|. |- +..++ .|....+.||+ |.|++.. +-...+++.++|++.|.
T Consensus 254 ~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~ 332 (560)
T 3h99_A 254 EIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSN 332 (560)
T ss_dssp BCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSE
T ss_pred eCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcE
Confidence 31 11 11111 23445678988 9999841 11333566789998883
Q ss_pred -EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 304 -FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 304 -f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++| .+++. +|+|||||.|+ +++.++.+. |.++|+|.|++..+. . ...+..|+.+.++.
T Consensus 333 v~~h-g~v~~-~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~-~-----~~~d~~f~~~~~~~ 392 (560)
T 3h99_A 333 LFVH-GYVTV-NGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLS-S-----RIDDIDLNLEDFVQ 392 (560)
T ss_dssp EEEE-CCEEE-TTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCC-S-----SCCCEEECHHHHHH
T ss_pred EEEE-eEEEe-CCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCC-C-----CCCCCCcCHHHHHH
Confidence 444 55444 99999999998 799999998 999999999998761 1 11456899999876
No 24
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.70 E-value=8.8e-17 Score=171.61 Aligned_cols=191 Identities=13% Similarity=0.095 Sum_probs=139.6
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCCC-------CCcHHHHHH-HHHHHHHcCCCCCCCccCCCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQT-------RFVPEAVEK-LEQDLKWIGVVPDESETVGGN 144 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~~-------R~~~~~~~~-I~~~L~wlGl~~De~p~~~g~ 144 (605)
.|||.|||||+.+|+.+|.+.+ .|+++++.|.| |+.. |++..+.+. |...|.|+|++|+..
T Consensus 43 ~PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~------ 115 (372)
T 1n3l_A 43 ATTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKL------ 115 (372)
T ss_dssp CCSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTE------
T ss_pred CCCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChhhc------
Confidence 4889999999999999999997 79999999999 8632 234455555 555679999999875
Q ss_pred cCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEc
Q psy16872 145 YGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKL 224 (605)
Q Consensus 145 ~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~ 224 (605)
.+|+||+.. .+.+++..++. |.|+||..++.. |. . .+.|++
T Consensus 116 -~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~-----------------~~--------------~-~v~~~~- 156 (372)
T 1n3l_A 116 -KFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKK-----------------AG--------------A-EVVKQV- 156 (372)
T ss_dssp -EEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHH-----------------HT--------------T-TTSCCC-
T ss_pred -EEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHh-----------------ch--------------h-hhhccc-
Confidence 368999984 34566666665 779999876532 00 0 000100
Q ss_pred CCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcE
Q psy16872 225 TNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKF 304 (605)
Q Consensus 225 ~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f 304 (605)
++ -+=|..+|-.--+.|-...+.+||++|+|+..+...++.|++.+|+..|..
T Consensus 157 -----------------------~~----~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~ 209 (372)
T 1n3l_A 157 -----------------------EH----PLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVH 209 (372)
T ss_dssp -----------------------SS----CCHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEE
T ss_pred -----------------------CC----CcceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCCCCEE
Confidence 01 012456666666777778899999999999999999999999999999999
Q ss_pred EEecceecCCCccccccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy16872 305 AHLPLLLNLNGSKLSKRQGD--MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 305 ~H~plil~~dg~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.|.|+|.+.+|+||||+.++ +.+. =.|+.+..++..
T Consensus 210 l~~pll~gldG~KMSKS~~ns~I~L~------d~p~~i~kKi~~ 247 (372)
T 1n3l_A 210 LMNPMVPGLTGSKMSSSEEESKIDLL------DRKEDVKKKLKK 247 (372)
T ss_dssp EEECCCCCSSCC-------CCSCBTT------CCHHHHHHHHHT
T ss_pred EecCccCCCCcccccCCCCCCeEecc------CCHHHHHHHHHH
Confidence 99999999999999999886 4443 249999999976
No 25
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.69 E-value=1.6e-17 Score=184.91 Aligned_cols=260 Identities=15% Similarity=0.159 Sum_probs=145.2
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCC-------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQ-------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~-------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||++||||+|++++.+.+||- ++..|+..++|.+. ......+.+.+.++|++|||.+|.
T Consensus 34 pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~ 113 (536)
T 4dlp_A 34 AYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDD 113 (536)
T ss_dssp BCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 589999999999999999999984 33567778888654 345678899999999999999996
Q ss_pred CccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCC-cCcCCCHHHHH
Q psy16872 138 SETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDN-KCRNLTQEQID 209 (605)
Q Consensus 138 ~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~-~cr~ls~~e~~ 209 (605)
. ++.+ ++.+..+++.++|.++|.+|.+ ||..++-.. ...+...|. +| .|.
T Consensus 114 ~---------~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l-~~~~~~~~~----~g~~c~-------- 171 (536)
T 4dlp_A 114 Y---------IRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYY-GEEETEVRA----DGVRYG-------- 171 (536)
T ss_dssp E---------EETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGCEECT----TSCEEC--------
T ss_pred c---------eeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCccc-CHHHhhcCC----CCCccc--------
Confidence 3 2334 4888999999999999999975 666432100 000000110 11 121
Q ss_pred HHHhcCCCceEE------EEcCCCccceecccc---ceeeec---------CCCCCCCcEEEecC---C----------c
Q psy16872 210 EKLKENSKYCIR------FKLTNHTESWQDLVY---GDISYN---------VFHNEGDPVIIKSD---G----------F 258 (605)
Q Consensus 210 ~~~~~g~~~~iR------~k~~~~~~~~~D~v~---G~i~~~---------~~~~~~D~Vi~ksD---G----------~ 258 (605)
.+|.+..+| |+++.-.....+.+. ..+... ......|..|-|++ | .
T Consensus 172 ---~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~ 248 (536)
T 4dlp_A 172 ---PQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVM 248 (536)
T ss_dssp ---TTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEE
T ss_pred ---CCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCce
Confidence 123333222 233210000000000 000000 01234577777652 1 1
Q ss_pred ccch------hhhh--------hhhhcCCcceEEcCCCCccc-HHHHHHHHHHcCCCCCc-EEEecceecCCCccccccC
Q psy16872 259 PTYH------FANV--------VDDHHMNISHVLRGVEWQIS-TTKHILIYKAFGWTPPK-FAHLPLLLNLNGSKLSKRQ 322 (605)
Q Consensus 259 PtY~------fA~v--------VDD~~m~ITHVIRG~d~l~s-tpkqi~ly~alG~~~P~-f~H~plil~~dg~KLSKR~ 322 (605)
.+|- ++.. .+.+.-.-.||+ |.|++.. +..+..+..++|+++|. ...+++++ .+|+|||||.
T Consensus 249 yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~-G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~-~~G~KMSKS~ 326 (536)
T 4dlp_A 249 YVWVDALTNYITALGYPDTTDERWAYWPANAHII-GKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLF-NRGEKMSKSV 326 (536)
T ss_dssp CHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEE-EGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEE-C---------
T ss_pred EEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEe-echHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEe-eCCceecccC
Confidence 1110 0000 000111124555 9998851 11233455678998774 33336655 5999999999
Q ss_pred CC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 323 GD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 323 g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|+ ++..++.+. |.++|+|.|++..+ +. ..+..||.+.+++
T Consensus 327 GNvi~p~d~i~~-~GaDalR~~ll~~~-~~------~~d~~fs~~~~~~ 367 (536)
T 4dlp_A 327 GNVIDPFELVER-YGLDQLRYFLMREV-PF------GQDGSYSHEAIVN 367 (536)
T ss_dssp ---CCHHHHHHH-HCHHHHHHHHHHHS-CT------TSCEECCHHHHHH
T ss_pred CCCCCHHHHHHH-cCcHHHHHHHHhcC-CC------CCCCCCCHHHHHH
Confidence 97 688898887 89999999999864 23 4567899999887
No 26
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.68 E-value=2.8e-16 Score=164.78 Aligned_cols=192 Identities=16% Similarity=0.202 Sum_probs=151.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||+ .+|.+|...+..|+++++.|-| ++......++.+.+..++.++|++|+... .++
T Consensus 40 ~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~-------i~~ 111 (323)
T 2cyb_A 40 EPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK-------FVL 111 (323)
T ss_dssp CCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE-------EEE
T ss_pred CCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE-------EEE
Confidence 89999999998 7899999999999999998866 32334678888999999999999998753 379
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+.... .++++.+ ..|.|.||-.++... +.+- |.
T Consensus 112 qS~~~~~-~~~~~~~----~~l~~~~t~~~l~~~----------~~~~-----------------~~------------- 146 (323)
T 2cyb_A 112 GSEYQLS-RDYVLDV----LKMARITTLNRARRS----------MDEV-----------------SR------------- 146 (323)
T ss_dssp GGGTTTS-HHHHHHH----HHHHHHSBHHHHHHH----------TTTT-----------------CS-------------
T ss_pred cchhccc-hHHHHHH----HHHhCccCHHHHhcc----------chhh-----------------cc-------------
Confidence 9998632 1333322 236799998877421 0010 00
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~pl 309 (605)
. .++ -+.|..+|.+..+.|+...+++||++|.|+..++..+..|.+.+|...|...|.|+
T Consensus 147 --------------~--~~~----~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pl 206 (323)
T 2cyb_A 147 --------------R--KED----PMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPI 206 (323)
T ss_dssp --------------C--SSS----CBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECC
T ss_pred --------------c--cCC----CCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCCceEEecCc
Confidence 0 011 04578899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 310 LLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 310 il~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|.+.+|+||||+.|+ +.+.+ .|++++..+...
T Consensus 207 l~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a 239 (323)
T 2cyb_A 207 LVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKA 239 (323)
T ss_dssp CBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTS
T ss_pred ccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhc
Confidence 999999999999764 45542 599999999864
No 27
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.66 E-value=1.5e-16 Score=179.38 Aligned_cols=204 Identities=15% Similarity=0.190 Sum_probs=146.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccH-HHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCC
Q psy16872 117 VPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRL-ALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPK 195 (605)
Q Consensus 117 ~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~-~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~ 195 (605)
+..+.+.+.++++.|||.+|..+ ..|+.. +...++++.|.++|.+|..
T Consensus 270 ~~~~~~~~~~~~~~L~V~fD~~~---------~ES~~~~~~~~~vi~~L~~kG~~ye~---------------------- 318 (607)
T 1f7u_A 270 REFSIEKYIDTYARLNIKYDVYS---------GESQVSKESMLKAIDLFKEKGLTHED---------------------- 318 (607)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEE---------EGGGCCHHHHHHHHHHHHHTTCEEEE----------------------
T ss_pred HHHHHHHHHHHHHHcCCcceeec---------CcchhhhhHHHHHHHHHHhCCCEEEE----------------------
Confidence 45677889999999999998753 455565 6678999999999999962
Q ss_pred CCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchh---hhhhhhh-c
Q psy16872 196 YDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHF---ANVVDDH-H 271 (605)
Q Consensus 196 Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~f---A~vVDD~-~ 271 (605)
+| .+=++++. | |+ ..++.|+.|+||.|||.. |.+++.+ .
T Consensus 319 -dG--------------------a~~~~~~~----~-----g~-------~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~ 361 (607)
T 1f7u_A 319 -KG--------------------AVLIDLTK----F-----NK-------KLGKAIVQKSDGTTLYLTRDVGAAMDRYEK 361 (607)
T ss_dssp -TT--------------------EEEEEGGG----T-----CT-------TTCEEEEECTTSCCCHHHHHHHHHHHHHHH
T ss_pred -CC--------------------cEEEEecc----c-----CC-------CCCceeEeccCCCcCCCCCcHHHHHHHHhh
Confidence 11 11122211 1 11 123579999999999985 6677776 4
Q ss_pred CCcceEE--cCCCCcccHHHHHHHHHHcCCCCC-cEEEecc-eecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVL--RGVEWQISTTKHILIYKAFGWTPP-KFAHLPL-LLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVI--RG~d~l~stpkqi~ly~alG~~~P-~f~H~pl-il~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
++.+++| .|.||....++...+.+++||+.+ .+.|+++ +++ |||||.|. ++++++.++.+ ++| .+ +..
T Consensus 362 ~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v~----kMSkR~G~~v~L~dLlde~~-~~a-~~-~~~ 434 (607)
T 1f7u_A 362 YHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQ----GMSTRKGTVVFLDNILEETK-EKM-HE-VMK 434 (607)
T ss_dssp HCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCEE----SCCGGGTCCCBHHHHHHHHH-HHH-HH-HHH
T ss_pred cCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecccccc----cccCCCCCcccHHHHHHHHH-HHH-HH-HHH
Confidence 7889998 999999988888899999999766 5899987 444 69999998 48999999844 366 22 333
Q ss_pred hcCCCCCCCCCCccccCCHHH-----HHHHhcccccccccccccccccccccccccccccccccccCCCCCCchhhhhhh
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKD-----LVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFN 421 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~ee-----li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N 421 (605)
. +.+ + ..+..+..+..+ .++ .|+++.-.+++..||.+++.+++
T Consensus 435 -~-~~~-~-~~~~~e~~~~a~~vgi~avr----------------------------y~~Ls~~~~s~~~Fd~d~~~~~~ 482 (607)
T 1f7u_A 435 -K-NEN-K-YAQIEHPEEVADLVGISAVM----------------------------IQDMQGKRINNYEFKWERMLSFE 482 (607)
T ss_dssp -T-CHH-H-HTTCSCHHHHHHHHHHHHHH----------------------------HHHHSSCTTCCEECCHHHHHCCS
T ss_pred -h-Ccc-c-ccchhhHHHHHHHHHHHHHH----------------------------HHHhccCCCCCcccCHHHHHHHh
Confidence 1 110 0 001234555555 344 89999999999999999999998
Q ss_pred H---HHHHh
Q psy16872 422 R---AEIRR 427 (605)
Q Consensus 422 ~---~~i~~ 427 (605)
+ -||+-
T Consensus 483 g~t~pylqY 491 (607)
T 1f7u_A 483 GDTGPYLQY 491 (607)
T ss_dssp SSSHHHHHH
T ss_pred ccchHHHHH
Confidence 6 55553
No 28
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.63 E-value=5.8e-16 Score=171.75 Aligned_cols=262 Identities=14% Similarity=0.166 Sum_probs=160.0
Q ss_pred eeEecCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCC
Q psy16872 72 LKHFLTSTGLLHLGGLRTALYNYLFAKS--HNGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGV 133 (605)
Q Consensus 72 v~~fp~PtG~LHiG~~RtAL~n~l~Ar~--~~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl 133 (605)
.|-+|+|||.+||||+|++++...+||- ..|.-++++.++| +......+.+.+.+++++||+
T Consensus 17 ~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 96 (524)
T 2x1l_A 17 TTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI 96 (524)
T ss_dssp EECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4566899999999999999999999995 5899999999998 223355789999999999999
Q ss_pred CCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCC-cCcCCCH
Q psy16872 134 VPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDN-KCRNLTQ 205 (605)
Q Consensus 134 ~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~-~cr~ls~ 205 (605)
.+|.. ++.|+ +.+..+++.++|.++|.+|.. ||...+--. -......|. +| .|.-
T Consensus 97 ~~d~~---------~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l-~~~ev~~g~----~G~~c~~--- 159 (524)
T 2x1l_A 97 SFDRF---------IRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFF-TENETTEQP----DGTRIAT--- 159 (524)
T ss_dssp CCSEE---------EETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGEEECT----TSCEEET---
T ss_pred cCCCC---------eecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccc-cHHHhccCC----CCCcccc---
Confidence 99953 45666 889999999999999999963 565321000 000000000 00 1210
Q ss_pred HHHHHHHhcCCCceEE------EEcCCCccceecccc-ce--ee----------ecCCCCCCCcEEEec---CCcc----
Q psy16872 206 EQIDEKLKENSKYCIR------FKLTNHTESWQDLVY-GD--IS----------YNVFHNEGDPVIIKS---DGFP---- 259 (605)
Q Consensus 206 ~e~~~~~~~g~~~~iR------~k~~~~~~~~~D~v~-G~--i~----------~~~~~~~~D~Vi~ks---DG~P---- 259 (605)
..|.+..+| |+++.-.....+.+. +. +. +- .....|..|-|. -|.|
T Consensus 160 -------~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~-~~~l~Dw~iSRqr~~WG~~iP~~ 231 (524)
T 2x1l_A 160 -------ETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFV-SGGLKDLSISRTTFDWGVPVPDH 231 (524)
T ss_dssp -------TTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHH-TTCCCCEECEESSCCSSCEETTE
T ss_pred -------ccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHH-HcCCcccceECCCCCcCccCCCC
Confidence 122222222 122110000000000 00 00 00 122346666553 2332
Q ss_pred ----cchh-hhhh----------------hhhcCCcceEEcCCCCcccHHHHH---HHHHHcCCCCC-cEEEecceecCC
Q psy16872 260 ----TYHF-ANVV----------------DDHHMNISHVLRGVEWQISTTKHI---LIYKAFGWTPP-KFAHLPLLLNLN 314 (605)
Q Consensus 260 ----tY~f-A~vV----------------DD~~m~ITHVIRG~d~l~stpkqi---~ly~alG~~~P-~f~H~plil~~d 314 (605)
.|-+ -..+ ..+ ..++.-+-|.|++. +.++ .+..++|+++| .+.++++++. +
T Consensus 232 ~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~-~p~di~~~G~D~~~--fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~ 307 (524)
T 2x1l_A 232 PDHVMYVWVDALTNYLTGVGFPDTESESFRRY-WPADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLLN-R 307 (524)
T ss_dssp EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHH-CSCSEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEEE-C
T ss_pred CCCEEEEecCCchHHHHHcCCCCCchHHHHhh-CCCeEEEEeechhH--hHHHHHHHHHHHCCCCCCcEEEECcEEEe-C
Confidence 1111 0100 001 12444455888873 4443 23456799877 3444487655 8
Q ss_pred CccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 315 GSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 315 g~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|+|||||.|+ +++.++.+. |.++|+|.|++..+ .+ ..+..||.+.+.+
T Consensus 308 G~KMSKS~GN~v~p~d~i~~-~g~DalR~~ll~~~-~~------~~d~~fs~~~l~~ 356 (524)
T 2x1l_A 308 GEKMSKSIGNVVDPVNLVDT-FGLDQVRYFLLREV-PF------GQDGSYNEDAIIG 356 (524)
T ss_dssp SCSEETTTEESSCHHHHHHH-HCHHHHHHHHHHHS-CT------TSCEEECHHHHHH
T ss_pred CcccCCcCCCCCCHHHHHHH-cChHHHHHHHHhcC-CC------CCCCCcCHHHHHH
Confidence 9999999997 799999987 99999999999865 22 4667899999887
No 29
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.57 E-value=1.3e-15 Score=170.82 Aligned_cols=262 Identities=16% Similarity=0.176 Sum_probs=155.8
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+|+++..+.+||- ++..|+.-++|.+.+ .....+.+.+.+++++|||.+|.
T Consensus 35 py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 114 (564)
T 3kfl_A 35 YYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNY 114 (564)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 599999999999999999999884 345677777776632 24568889999999999999996
Q ss_pred CccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHH
Q psy16872 138 SETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDE 210 (605)
Q Consensus 138 ~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~ 210 (605)
. ++.+ ++.+..+++.++|.++|.+|.. ||...+-. +...+...| .+.+.+.|...
T Consensus 115 ~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~-l~~~~~~~~-~~~~g~~c~~~------- 176 (564)
T 3kfl_A 115 F---------IRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF-LTAQNVADG-VDRDGKPCKVS------- 176 (564)
T ss_dssp E---------EETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE-ECGGGEEEE-ECTTSCEEEEE-------
T ss_pred c---------ccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCC-CCHHHhccC-cCCCCCEeccc-------
Confidence 3 2333 5788999999999999999974 56543210 000000000 01111233100
Q ss_pred HHhcCCCceEE------EEcCCCccceeccccc---eeeec---------CCCCCCCcEEEe---cC-------------
Q psy16872 211 KLKENSKYCIR------FKLTNHTESWQDLVYG---DISYN---------VFHNEGDPVIIK---SD------------- 256 (605)
Q Consensus 211 ~~~~g~~~~iR------~k~~~~~~~~~D~v~G---~i~~~---------~~~~~~D~Vi~k---sD------------- 256 (605)
...|.+..+| |+++.-.....+.+.. .+... ......|..|-| ++
T Consensus 177 -~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~ 255 (564)
T 3kfl_A 177 -LESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERH 255 (564)
T ss_dssp -TTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEE
T ss_pred -cCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCC
Confidence 0123333322 3332100000000100 00000 011345777766 22
Q ss_pred -------Ccccchhhhhh---hh---------h--c---CCcceEEcCCCCcccHHHHHHH----HHHcCCCCCc-EEEe
Q psy16872 257 -------GFPTYHFANVV---DD---------H--H---MNISHVLRGVEWQISTTKHILI----YKAFGWTPPK-FAHL 307 (605)
Q Consensus 257 -------G~PtY~fA~vV---DD---------~--~---m~ITHVIRG~d~l~stpkqi~l----y~alG~~~P~-f~H~ 307 (605)
+..+| ++..- ++ + . -.--|++ |.|++. .|..+ ..++|+++|. ...+
T Consensus 256 v~yVWfDa~~~y-~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~-GkDii~---FH~~~wpa~L~a~g~~~~~~v~~h 330 (564)
T 3kfl_A 256 CIYVWLDALFNY-YTGALTRVATDGTETLDEDHHALNRWPADVHVV-GKDILK---FHAIYWPAFLMSAELPLPERLVSH 330 (564)
T ss_dssp EECHHHHHHTHH-HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEE-EGGGHH---HHHTHHHHHHHHTTCCCCSCEEEE
T ss_pred EEEEeccCcHHH-HHHhCccccccccccchhcchhhhcCccceEEE-eecccc---hHHHHHHHHHHhCCCCCCcEEEEc
Confidence 22222 22211 00 1 0 0124666 888874 45433 3567998874 3334
Q ss_pred cceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 308 PLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 308 plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+++ +.+|+|||||.|+ ++..++.+. |.++|+|.|++..+ +. ..+..||.+.+++
T Consensus 331 g~v-~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~-~~------~~D~~fs~~~~~~ 385 (564)
T 3kfl_A 331 GWW-TKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRES-NF------QDDGDYSDKNMVA 385 (564)
T ss_dssp CCE-EETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHC-CS------SCCEECCHHHHHH
T ss_pred ccE-eeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcC-Cc------ccCCCCCHHHHHH
Confidence 554 8899999999997 688999887 89999999999865 23 4667899999987
No 30
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.52 E-value=3.3e-14 Score=161.14 Aligned_cols=230 Identities=20% Similarity=0.212 Sum_probs=154.7
Q ss_pred ceeEe--cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCC--------------------------------
Q psy16872 71 KLKHF--LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDT-------------------------------- 111 (605)
Q Consensus 71 ~v~~f--p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDT-------------------------------- 111 (605)
++.-| |.|+|+|||||+|++++-..+||-. .| .++--|.|.
T Consensus 121 V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (629)
T 2zue_A 121 VIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKD 200 (629)
T ss_dssp EEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS
T ss_pred EEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccccccc
Confidence 34455 6888999999999999988888753 34 444445553
Q ss_pred CC----------------------------------------CCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccccc
Q psy16872 112 DQ----------------------------------------TRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151 (605)
Q Consensus 112 D~----------------------------------------~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QS 151 (605)
|+ ...+..+.+.+.++++.|||.+|..+ ..|
T Consensus 201 ~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~---------~es 271 (629)
T 2zue_A 201 NPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLV---------WES 271 (629)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEE---------EHH
T ss_pred CcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcccccc---------CcC
Confidence 11 12245667788999999999998753 456
Q ss_pred cc--HHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 152 KR--LALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 152 er--~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
+. .+...++++.|.++|.+|.| + . ..|+| ..++ ++..
T Consensus 272 ~~~~~~~v~~vi~~L~~kG~~y~~--~-------------~---ge~~G------------------a~~v--~~~~--- 310 (629)
T 2zue_A 272 DIVRRKLFEIALELLSKNENFYIP--S-------------D---GKYRG------------------AFVM--DLRK--- 310 (629)
T ss_dssp HHHHTTHHHHHHHHHHTSTTEECC--S-------------S---STTTT------------------CEEE--ECTT---
T ss_pred ccccchhHHHHHHHHHHCCCcccc--c-------------c---CCcCC------------------cEEE--ECcc---
Confidence 55 55778999999999999975 1 0 11222 1222 2211
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhh---hhhhh--------hc---------------------CCcceE
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFA---NVVDD--------HH---------------------MNISHV 277 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA---~vVDD--------~~---------------------m~ITHV 277 (605)
| | . ....+..|+.|+||.+||... .+... .. .+..|+
T Consensus 311 -~-----g----~-~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~ 379 (629)
T 2zue_A 311 -L-----F----P-DMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIV 379 (629)
T ss_dssp -T-----C----S-SSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEE
T ss_pred -c-----C----C-ccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcE
Confidence 1 1 0 111234799999999999654 33331 01 155666
Q ss_pred E--cCCCCcccHHHHHHHHHHcCCCC-C-cEEEe--cceecCCCccccccCC--C-CChHHHHHcC--------------
Q psy16872 278 L--RGVEWQISTTKHILIYKAFGWTP-P-KFAHL--PLLLNLNGSKLSKRQG--D-MSVEAIRNSE-------------- 334 (605)
Q Consensus 278 I--RG~d~l~stpkqi~ly~alG~~~-P-~f~H~--plil~~dg~KLSKR~g--~-~sv~~~r~~G-------------- 334 (605)
| -|.+|..--++-....+++||+. + .+.|+ .+ ++.+|.|||||.| . ++++++.+++
T Consensus 380 IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~-V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~ 458 (629)
T 2zue_A 380 INVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEH-VERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPA 458 (629)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECC-EEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeee-EEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcc
Confidence 4 67777644444456667889975 3 57888 45 4456789999999 6 6899998875
Q ss_pred ------------CCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 335 ------------FLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 335 ------------~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.++|++.|+..-. . .++-.|+++.|++
T Consensus 459 ~~~~~~~~~a~~vg~~AvRy~~L~~~--~------~~~~~Fd~d~~~~ 498 (629)
T 2zue_A 459 LSDEEKAEVAEKVGIGAIRYNLIKYS--P------DKKIIFRWEDVLN 498 (629)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSSC--T------TSCEECCHHHHSC
T ss_pred cchhhHHHHHHhcChhHhhHHHHhcC--C------CCCCeecHHHHHH
Confidence 78899999997643 2 5678899988876
No 31
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.36 E-value=1.6e-12 Score=149.64 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=69.1
Q ss_pred EecCCCCcCChhhHHH-HHHHHHHHHH--cCCeEEE---eccCCCC-------------CCCcHHHHHHHHHHHHHcCCC
Q psy16872 74 HFLTSTGLLHLGGLRT-ALYNYLFAKS--HNGSFIL---RIEDTDQ-------------TRFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 74 ~fp~PtG~LHiG~~Rt-AL~n~l~Ar~--~~G~fiL---RiEDTD~-------------~R~~~~~~~~I~~~L~wlGl~ 134 (605)
-.|+|||.+||||+++ .+....+||- ..|.=++ -.|+.+. ...+..+.+.+.+++++|||+
T Consensus 9 ~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~lgis 88 (722)
T 1rqg_A 9 ALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKIS 88 (722)
T ss_dssp CCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3469999999999998 8999999985 3465444 4444432 223567889999999999999
Q ss_pred CCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 135 PDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
||.. |+.+ ++.+.-+++..+|.++|.+|.
T Consensus 89 ~D~~---------~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 89 FDFF---------GRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp CSEE---------EETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCC---------eeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9963 3433 366777889999999999996
No 32
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.26 E-value=5.2e-12 Score=140.39 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=70.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.||||||++.+....+||-+ .|.=++-+-+||. .-....+.+.+.+++++|||++|-
T Consensus 18 pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~lgi~~D~ 97 (542)
T 3u1f_A 18 YYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQMDYSIDY 97 (542)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCSE
T ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 6999999999999999999999954 5777777777874 112467889999999999999986
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
... ....++.+.-+++..+|.++|.+|.
T Consensus 98 ~~~-------T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 98 FIR-------TTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp EEE-------TTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred Ccc-------CCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 321 1122456667788899999999996
No 33
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.14 E-value=1.6e-10 Score=121.87 Aligned_cols=195 Identities=23% Similarity=0.297 Sum_probs=139.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----C----CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----T----DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----T----D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
..|||.|||||+..++-||......|.++++.|-| | |+++ ..+.+..+..++.++|++++... -
T Consensus 19 ~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~-------i 90 (340)
T 2g36_A 19 MRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSV-------I 90 (340)
T ss_dssp ECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSE-------E
T ss_pred eCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeE-------E
Confidence 38999999999999999999999999999999999 6 6665 66677778888999999998653 3
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
|.||+..+ |.+.+- .+-|.++-.+|+ |..+-+. ++ -|++-
T Consensus 91 f~qS~~~~-~~el~~-------~l~~~~~v~~l~--r~~~~k~----------------~~-----------~r~~~--- 130 (340)
T 2g36_A 91 FVQSGVKE-HAELAL-------LFSMIVSVSRLE--RVPTYKE----------------IK-----------SELNY--- 130 (340)
T ss_dssp EEGGGCTH-HHHHHH-------HHHTTSCHHHHH--TCHHHHT----------------C--------------------
T ss_pred EECCchHH-HHHHHH-------HHHccCCHHHHH--HhHHHHh----------------HH-----------HHhcc---
Confidence 78998765 433332 234889887764 2111110 00 01110
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCC
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTP 301 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~ 301 (605)
+|- -+=|..+|-.--+.|-...+.++|+.|+|...+.-...-+.+.|+ ++.
T Consensus 131 --------------------~~~---~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~ 187 (340)
T 2g36_A 131 --------------------KDL---STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPE 187 (340)
T ss_dssp ---------------------CC---CSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred --------------------CCC---CChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCC
Confidence 000 011345555555666667899999999999988877777777664 345
Q ss_pred Cc--EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 302 PK--FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 302 P~--f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|. ..|.|+|.+.+|+||||+.++ +.+.+ .|+.+..++...
T Consensus 188 P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~a 230 (340)
T 2g36_A 188 PEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILRM 230 (340)
T ss_dssp CEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHTC
T ss_pred chhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHhC
Confidence 65 557899999999999999875 55553 899999999764
No 34
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.07 E-value=9.5e-10 Score=117.01 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=139.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCC--CC---CcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQ--TR---FVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~--~R---~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
.|||.||||| ..++.+|......|.++++.|-| |+. .+ ...+....+..++.++|++++... -
T Consensus 43 ~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~-------i 114 (364)
T 2cya_A 43 EPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVR-------F 114 (364)
T ss_dssp CCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCE-------E
T ss_pred CCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceE-------E
Confidence 8899999999 99999999999999999999998 333 13 344666788899999999998643 3
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
+.||+.... ..+...++ .+-|.+|-.++... +.|-+ |.. .
T Consensus 115 ~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~----------~~~k~----------------------r~~--~- 154 (364)
T 2cya_A 115 VDAEELASD-KDYWGLVI----RVAKRASLARVRRA----------LTIMG----------------------RRA--E- 154 (364)
T ss_dssp EEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTT----------C----------------------------C--C-
T ss_pred Eecchhhcc-hHHHHHHH----HHHCcCcHHHHHcC----------chhhh----------------------hhc--C-
Confidence 789987643 23444443 23588887666310 00100 000 0
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEe
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHL 307 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~ 307 (605)
. +- -+-|..+|-.--+.|-...+.+||+.|.|...+.-...-+.+.+|...|...|.
T Consensus 155 ----------------~----~~---i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~ 211 (364)
T 2cya_A 155 ----------------E----AE---VDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHT 211 (364)
T ss_dssp ----------------G----GG---SCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEE
T ss_pred ----------------C----CC---ccchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCCCCceeecc
Confidence 0 00 012456676667777778899999999999988888888889999999999999
Q ss_pred cceecCC-----------------CccccccC--CCCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 308 PLLLNLN-----------------GSKLSKRQ--GDMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 308 plil~~d-----------------g~KLSKR~--g~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|+|.+.+ |+||||++ +++.+.+ .|+.+..++...
T Consensus 212 ~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d------~p~~i~~Ki~~a 264 (364)
T 2cya_A 212 PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD------SDDDIRRKIRKA 264 (364)
T ss_dssp CCCBCSSCC----------------CBCCSSSGGGSCBTTC------CHHHHHHHHHTS
T ss_pred ceeeCCCcccccccccccccccccccccCCCCCCCEeeccC------CHHHHHHHHHhC
Confidence 9999998 68999995 3466643 599999999763
No 35
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=98.96 E-value=3.4e-10 Score=119.77 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=136.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||...||.+|..... +.++++.|-| .|++ ...+....+..++.++||+++... -|+
T Consensus 12 ~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~-------if~ 82 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKAC-------LFL 82 (348)
T ss_dssp CCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEE-------EEE
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeE-------EEE
Confidence 79999999999999999987776 8899999999 5665 455566778889999999998643 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+..+ +.+..-.| .|.++-.+|+.+. + |...... .+ |
T Consensus 83 qS~~~~-~~el~w~l-------~~~~~~~~l~R~~--~--------~k~~~~~-----------~~------~------- 120 (348)
T 2yy5_A 83 QSDLLE-HSMMGYLM-------MVQSNLGELQRMT--Q--------FKAKKAE-----------QT------R------- 120 (348)
T ss_dssp GGGCHH-HHHHHHHH-------HHHSBHHHHHHCH--H--------HHTTC-----------------------------
T ss_pred CCcccc-hhHHHHHH-------HhhccHHHHhchH--H--------HHHHHHh-----------hc------c-------
Confidence 999876 43433222 3888888775422 1 1000100 00 0
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPK 303 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~ 303 (605)
.|.| .|- -+=|..+|-.--+.|-...+.+||+.|+|...+.-...-+.+.|| +..|.
T Consensus 121 ~~~~--------------~~~---~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~ 183 (348)
T 2yy5_A 121 NPNG--------------TLN---IPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQ 183 (348)
T ss_dssp --------------------C---CBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_pred cccc--------------CCC---CChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCe
Confidence 0111 000 122455555555666677899999999999988777777777775 67898
Q ss_pred EEE---ecceecCCC--ccccccCCC----CChHHHHHcCCCHHHHHHHHHH
Q psy16872 304 FAH---LPLLLNLNG--SKLSKRQGD----MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 304 f~H---~plil~~dg--~KLSKR~g~----~sv~~~r~~G~~PeAl~nfla~ 346 (605)
..| .|+|.+.+| +||||+.++ +.+. =.|+.+..=+..
T Consensus 184 ~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~------D~~~~i~~KI~~ 229 (348)
T 2yy5_A 184 FVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLD------DPKEVVVKKIRQ 229 (348)
T ss_dssp EECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTT------CCHHHHHHHHHT
T ss_pred eecccccccccCCCCcchhcCCCCCCCCceEeec------CCHHHHHHHHHh
Confidence 888 589999988 899999887 4443 368888888865
No 36
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=98.95 E-value=1.7e-09 Score=113.47 Aligned_cols=191 Identities=17% Similarity=0.197 Sum_probs=133.6
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCCC--CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQT--RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~~--R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
.|||.|||||+..++.||+.... |.++++.|-| |++. ....+....+..++.++|++++... -|+|
T Consensus 9 ~PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~-------if~q 80 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQAT-------LFIQ 80 (328)
T ss_dssp CCCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEE-------EEEG
T ss_pred CCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcE-------EEec
Confidence 78999999999999999997754 8899999999 8531 1345566678889999999998643 3789
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccc
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTES 230 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 230 (605)
|+..+ +.+..-.| .|.++-.+++.+.. | .++...+
T Consensus 81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~~----------~------------k~~~~~~--------------- 115 (328)
T 1i6k_A 81 SEVPA-HAQAAWML-------QCIVYIGELERMTQ----------F------------KEKSAGK--------------- 115 (328)
T ss_dssp GGCTH-HHHHHHHH-------HHHSCHHHHHTCHH----------H------------HHHHTTC---------------
T ss_pred Cchhh-hhHHHHHH-------hccccHHHHHHHHH----------H------------HHHHhcc---------------
Confidence 99865 33333222 27888777643210 1 0111000
Q ss_pred eeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCcE
Q psy16872 231 WQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPKF 304 (605)
Q Consensus 231 ~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~f 304 (605)
|. -+=|..+|-.--+.|-...+.++|+.|+|...+.-...-|.+.+| +..|..
T Consensus 116 ------------------~~---~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~ 174 (328)
T 1i6k_A 116 ------------------EA---VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEA 174 (328)
T ss_dssp ------------------SS---CCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEE
T ss_pred ------------------CC---CCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCee
Confidence 00 011344555555566667899999999999988877777777776 567776
Q ss_pred EE---ecceecCCC--ccccccCCC----CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 305 AH---LPLLLNLNG--SKLSKRQGD----MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 305 ~H---~plil~~dg--~KLSKR~g~----~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.+ .|+|.+.+| +||||+.++ +.+. =.|+.+..=+...
T Consensus 175 li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~------d~~~~i~~KI~~a 220 (328)
T 1i6k_A 175 RIPKVGARIMSLVDPTKKMSKSDPNPKAYITLL------DDAKTIEKKIKSA 220 (328)
T ss_dssp ECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTT------CCHHHHHHHHHHC
T ss_pred eeccccccccCCCCCccCCCCCCCCcCceeeec------CCHHHHHHHHHhc
Confidence 54 689999999 899999987 4443 3788888888764
No 37
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.90 E-value=4.3e-09 Score=110.90 Aligned_cols=192 Identities=14% Similarity=0.177 Sum_probs=134.5
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcC-CeEEEeccC-C---C---CC-CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHN-GSFILRIED-T---D---QT-RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~-G~fiLRiED-T---D---~~-R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
.|||.|||||+..++.+|+.....| .+.++.|-| | . ++ ....+.+..+..++.++|++++... -
T Consensus 9 ~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~-------i 81 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVT-------L 81 (337)
T ss_dssp CSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSE-------E
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheE-------E
Confidence 7899999999999999999877777 788888888 2 2 21 1345666778888999999998543 3
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
+.||+..+ |.+.+.. +-|.++-.+|+. ..+ ..+++..+
T Consensus 82 ~~qS~~~~-~~el~~~-------l~~~~~~~~l~r--~~~--------------------~k~r~~~~------------ 119 (337)
T 2el7_A 82 FVQSHVPE-HTELSWV-------FTTLTPLGDLTR--MTQ--------------------FKDKASKQ------------ 119 (337)
T ss_dssp EEGGGSTH-HHHHHHH-------HHHTSBHHHHHT--SHH--------------------HHHHTTSS------------
T ss_pred EEcCcchh-hHHHHHH-------HHccCCHHHHHH--hHH--------------------HHHHhccC------------
Confidence 79999865 3333322 458888776631 111 11111100
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc----C--CCC
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF----G--WTP 301 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al----G--~~~ 301 (605)
|- -+=|..+|-.--+.|-...+.++|+.|+|...+.-...-|.+.+ | +..
T Consensus 120 ---------------------~~---~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~ 175 (337)
T 2el7_A 120 ---------------------ET---VWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPE 175 (337)
T ss_dssp ---------------------SC---CBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred ---------------------CC---CChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCC
Confidence 00 01134455555556666789999999999998877777777655 6 678
Q ss_pred CcEEEe---cceecCCC-ccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 302 PKFAHL---PLLLNLNG-SKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 302 P~f~H~---plil~~dg-~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|...|. |+|.+.+| +||||+.++ +.+.+ .|+.+..++...
T Consensus 176 P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~Ki~~a 220 (337)
T 2el7_A 176 PQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQKIQHL 220 (337)
T ss_dssp CEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHHHHTC
T ss_pred CeeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHHHHhC
Confidence 988887 89999999 999999886 44432 499999999764
No 38
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=98.83 E-value=6e-09 Score=108.77 Aligned_cols=190 Identities=13% Similarity=0.150 Sum_probs=129.8
Q ss_pred eeEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-C----C--CCCCcHHHHHHHHHHHHHcCCCCCCCccCC
Q psy16872 72 LKHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-T----D--QTRFVPEAVEKLEQDLKWIGVVPDESETVG 142 (605)
Q Consensus 72 v~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-T----D--~~R~~~~~~~~I~~~L~wlGl~~De~p~~~ 142 (605)
.+-|- .|||.||||| ..++.+|......|.++++.|-| | | ......+....+..++.++|++ ..
T Consensus 29 ~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~~----- 101 (314)
T 2zp1_A 29 KSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-AK----- 101 (314)
T ss_dssp EEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-CE-----
T ss_pred CEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-eE-----
Confidence 34554 7899999999 99999999999999999998844 3 2 2245667778899999999998 33
Q ss_pred CccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEE
Q psy16872 143 GNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRF 222 (605)
Q Consensus 143 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~ 222 (605)
-++||+.... ..+.+.++ .+-|.+|-.++.... .|-+ |
T Consensus 102 ----~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~----------~~~~--~--------------------- 139 (314)
T 2zp1_A 102 ----YVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRSM----------ELIA--R--------------------- 139 (314)
T ss_dssp ----EEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHHT----------TTTS--C---------------------
T ss_pred ----EEECChhhcc-hHHHHHHH----HHHCcCcHHHHhccc----------hhhh--h---------------------
Confidence 2569988654 34455444 345888877764221 0100 0
Q ss_pred EcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC
Q psy16872 223 KLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP 302 (605)
Q Consensus 223 k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P 302 (605)
. .++ -+=|..+|-.--+.|-...+.+||+.|+|...+ +.+-+-+.-+.|
T Consensus 140 -~----------------------~~~----~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~----~~l~R~i~~~~~ 188 (314)
T 2zp1_A 140 -E----------------------DEN----PKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI----HMLARELLPKKV 188 (314)
T ss_dssp -C----------------------CSS----CCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHH----HHHHHHHSSSCC
T ss_pred -c----------------------cCC----CCchhhhhHHHHHHhHHhhCCCEEEcChhHHHH----HHHHHHhcCCCc
Confidence 0 000 011334444444555556799999999999853 334444444678
Q ss_pred cEEEecceecCCC-ccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 303 KFAHLPLLLNLNG-SKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 303 ~f~H~plil~~dg-~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
...|.|+|.+.+| +||||+.++ +++. =.|+.+..=+...
T Consensus 189 ~~~~~~~l~~l~G~~KMSKS~~~~I~L~------d~~~~i~~KI~~a 229 (314)
T 2zp1_A 189 VCIHNPVLTGLDGEGKMSSSKGNFIAVD------DSPEEIRAKIKKA 229 (314)
T ss_dssp EEEEECCCBCTTSSSBCCTTTTCSCBTT------CCHHHHHHHHHHS
T ss_pred EEeeccccccCCcccccCCCCcceecCC------CCHHHHHHHHHhC
Confidence 8899999999999 799999654 4554 2688888888764
No 39
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.83 E-value=3.8e-09 Score=111.90 Aligned_cols=200 Identities=21% Similarity=0.249 Sum_probs=133.4
Q ss_pred ceeEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCC------CcHHHHHHHHHHHHHcCCCCCCCccCC
Q psy16872 71 KLKHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTR------FVPEAVEKLEQDLKWIGVVPDESETVG 142 (605)
Q Consensus 71 ~v~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R------~~~~~~~~I~~~L~wlGl~~De~p~~~ 142 (605)
+.+-|- .|||.|||||+..++.+|.........|++.-|+|.... ...+....+..++.++|++++...
T Consensus 22 ~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~--- 98 (351)
T 1yi8_B 22 RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTT--- 98 (351)
T ss_dssp CSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEE---
T ss_pred CcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcE---
Confidence 345554 889999999999999999766555445666555543221 345666678889999999998543
Q ss_pred CccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHh-cCCCceEE
Q psy16872 143 GNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLK-ENSKYCIR 221 (605)
Q Consensus 143 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~-~g~~~~iR 221 (605)
-|.||+..+ |.+.+- .|.|.++-.+|.. ..+ +.+++. .|
T Consensus 99 ----i~~qS~~~~-~~el~~-------~l~~~~~v~~l~r--~~~--------------------~k~~~~~~~------ 138 (351)
T 1yi8_B 99 ----CVVQSAVPE-LAELTV-------YFLNLVTVSHLRQ--NPT--------------------VKAEIAQKG------ 138 (351)
T ss_dssp ----EEEGGGCTH-HHHHHH-------HHHTTSBHHHHHT--CHH--------------------HHHHHHHHT------
T ss_pred ----EEEcCchhh-HHHHHH-------HHhccCCHHHHHh--hhH--------------------HHHHHhhcC------
Confidence 378998865 333322 3459999877642 111 111111 00
Q ss_pred EEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc----
Q psy16872 222 FKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF---- 297 (605)
Q Consensus 222 ~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al---- 297 (605)
|. .+. +-|..+|-.--+.|-...+.+||+.|+|...+.-...-|.+.|
T Consensus 139 ---------f~--------------~~~-----~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~y 190 (351)
T 1yi8_B 139 ---------YG--------------ERV-----PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALY 190 (351)
T ss_dssp ---------CT--------------TCC-----BHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred ---------CC--------------CCC-----chHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhc
Confidence 00 000 1234556666666666789999999999998888777777765
Q ss_pred C--CCCCcEE--EecceecCCCc-cccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 298 G--WTPPKFA--HLPLLLNLNGS-KLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 298 G--~~~P~f~--H~plil~~dg~-KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
| ++.|... |.|+|.+.+|+ ||||+.++ +.+. =.|+.+..++...
T Consensus 191 g~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~------d~p~~i~~Ki~~a 240 (351)
T 1yi8_B 191 APVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALG------DSADEVARKVMGM 240 (351)
T ss_dssp CSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTT------CCHHHHHHHHHTC
T ss_pred ccccCCCeeeeecCccccCCCCccccCCCCCCeecCC------CCHHHHHHHHHhc
Confidence 4 5667643 58999999997 99999886 3443 2499999999763
No 40
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=98.79 E-value=1.9e-08 Score=117.45 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=67.2
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEeccCCCCC-------------C--------------------Cc
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKS--HNGSFILRIEDTDQT-------------R--------------------FV 117 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~--~~G~fiLRiEDTD~~-------------R--------------------~~ 117 (605)
.-+|+|||.|||||+++.+....+||- ..|.-++.+-.+|.- . .+
T Consensus 44 ~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~ 123 (821)
T 1ile_A 44 EGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESV 123 (821)
T ss_dssp CCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHH
Confidence 445799999999999999999999995 468777766666531 1 12
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEee
Q psy16872 118 PEAVEKLEQDLKWIG--VVPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 118 ~~~~~~I~~~L~wlG--l~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 172 (605)
..+.+.+.+.|++|| ++||.. |+.++ +.+.-+....+|.++|.+|+
T Consensus 124 ~~~~~~~~~~~~~lg~~~dwd~~---------~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 124 FTYEKEWEAFTERIAYWVDLEDA---------YATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp TTTHHHHTTHHHHTTCCCEEEEE---------EETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCeEccCCC---------eEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 256677899999999 899873 44432 33334556679999999997
No 41
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=98.76 E-value=2e-08 Score=117.63 Aligned_cols=90 Identities=24% Similarity=0.278 Sum_probs=67.4
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC------------------CCC--------------cHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ------------------TRF--------------VPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~------------------~R~--------------~~~~~ 121 (605)
|+|||.|||||+++.+....+||.+ .|.-++.+-.+|. .+. +.++.
T Consensus 43 Py~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~ 122 (862)
T 1gax_A 43 PNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122 (862)
T ss_dssp CBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999964 6877776655552 111 46778
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.|.+.|+.||+..|=. -+|+.. ++.+.-+....+|.++|.+|+
T Consensus 123 ~~~~~q~~rlG~s~Dw~-------r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 123 GTILKQLKRLGASADWS-------REAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHTTCCCCGG-------GCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCccccCC-------CCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 99999999999876622 123333 344555677789999999997
No 42
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=98.41 E-value=1.7e-06 Score=90.59 Aligned_cols=191 Identities=17% Similarity=0.186 Sum_probs=120.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CCC-CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQT-RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~~-R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
.|||.|||||...+|.+|..-.. |.+.++-|-|- |++ ....+....+..++..+|++++... -|.|
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~-------i~~q 82 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSV-------FWLQ 82 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSE-------EEEG
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceE-------EEEC
Confidence 79999999999999988866544 65555544442 221 1244556667788888999987653 3789
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccc
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTES 230 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 230 (605)
|+-.+ |.+.+-.| -|+++-.+|+.. .+ ..+++..+.
T Consensus 83 S~~~~-~~el~~~l-------~~~~~~~~l~r~--~~--------------------~K~~~~~~~-------------- 118 (322)
T 3tzl_A 83 SDVKE-VMELYWIL-------SQFTPMGLLERA--HS--------------------YKDKVAKGL-------------- 118 (322)
T ss_dssp GGCTH-HHHHHHHH-------GGGCBHHHHHSC--HH--------------------HHHHHHTTC--------------
T ss_pred Ccchh-HHHHHHHH-------hccCcHHHHHhh--hH--------------------HHHHHccCC--------------
Confidence 98765 33333322 388887766311 10 111121110
Q ss_pred eeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCcE
Q psy16872 231 WQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPKF 304 (605)
Q Consensus 231 ~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~f 304 (605)
+ -+=|..+|-.--+.|-...+.++|.-|.|...+--.=.-+.+.+| +..|.-
T Consensus 119 -----------------~-----~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~ 176 (322)
T 3tzl_A 119 -----------------S-----ASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEA 176 (322)
T ss_dssp -----------------C-----CBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEE
T ss_pred -----------------C-----CchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchh
Confidence 0 011345555555666667899999999998754332233444454 355665
Q ss_pred EE---ecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 305 AH---LPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 305 ~H---~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.| .|+|.+.+|+||||+.++ +.+.+ .|+.+...+...
T Consensus 177 ~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i~~KI~~a 217 (322)
T 3tzl_A 177 RVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTLKKQISSI 217 (322)
T ss_dssp ECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHHHHHHHTC
T ss_pred hhccccccccCCCCCcCCCCCCCceecCC------CHHHHHHHHHhc
Confidence 55 789999999999999875 44432 799999999763
No 43
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=98.27 E-value=4.4e-06 Score=90.68 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=69.4
Q ss_pred cccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc-cccccCCC-CChHHHHHcCC
Q psy16872 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS-KLSKRQGD-MSVEAIRNSEF 335 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~-KLSKR~g~-~sv~~~r~~G~ 335 (605)
..+|-+--+.|-...+.++|+-|.|...|.-.-.-|.+.+|..+|...|.|+|.+.+|+ ||||+.++ +++.+
T Consensus 172 ef~YPlLQaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------ 245 (432)
T 1h3f_A 172 ELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------ 245 (432)
T ss_dssp GGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------
T ss_pred ccchhhHHhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCC------
Confidence 45666666677777789999999999988777778888999888878899999999997 99999875 56654
Q ss_pred CHHHHHHHHHHh
Q psy16872 336 LPNALINFVTNF 347 (605)
Q Consensus 336 ~PeAl~nfla~l 347 (605)
.|+.+..++...
T Consensus 246 sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 246 PPEAMFKKLMRV 257 (432)
T ss_dssp CHHHHHHHHHTS
T ss_pred CHHHHHHHHhCC
Confidence 899999999763
No 44
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.97 E-value=2.2e-05 Score=84.15 Aligned_cols=189 Identities=11% Similarity=0.096 Sum_probs=116.7
Q ss_pred eeEec--CCCCcCChhhHHHHH-HHHHHHHHcCCeEEEeccC-C----CC---CCCcHHHHHHHHHHHHHcCCCCCCCcc
Q psy16872 72 LKHFL--TSTGLLHLGGLRTAL-YNYLFAKSHNGSFILRIED-T----DQ---TRFVPEAVEKLEQDLKWIGVVPDESET 140 (605)
Q Consensus 72 v~~fp--~PtG~LHiG~~RtAL-~n~l~Ar~~~G~fiLRiED-T----D~---~R~~~~~~~~I~~~L~wlGl~~De~p~ 140 (605)
++-|- .|||.|||||.-.++ .+| +-..+|.+.++=|-| + |+ .....+....+..++..+|++++...
T Consensus 74 ~~i~sG~~PTG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~- 151 (392)
T 3jxe_A 74 FFLYTGRGPSGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTF- 151 (392)
T ss_dssp CEEEEEECCSSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE-
T ss_pred eEEEeccCCCCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceE-
Confidence 34453 788999999999996 788 455567755544433 2 22 12234555567777888899987653
Q ss_pred CCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceE
Q psy16872 141 VGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCI 220 (605)
Q Consensus 141 ~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~i 220 (605)
-|+||+-.+ |.+.+-.|- |.+|-.++.. +. |
T Consensus 152 ------i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~----------------------------~~--~----- 182 (392)
T 3jxe_A 152 ------IFQNSEFTK-IYEMAIPIA-------KKINFSMAKA----------------------------VF--G----- 182 (392)
T ss_dssp ------EEETTTSTH-HHHHHHHHH-------HHSBHHHHHH----------------------------HH--C-----
T ss_pred ------EEECchhHH-HHHHHHHHH-------hhCCHHHHhh----------------------------hh--c-----
Confidence 378999887 555555552 5455443311 00 0
Q ss_pred EEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcC-CcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 221 RFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHM-NISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 221 R~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m-~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
++ | . . +=|..+|-+--+.|-... .-++|.-|.|...+--.=.-+.+.+|+
T Consensus 183 -~~---------~----------~----~-----~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~ 233 (392)
T 3jxe_A 183 -FT---------E----------Q----S-----KIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGY 233 (392)
T ss_dssp -CC---------T----------T----S-----BHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTS
T ss_pred -cC---------C----------C----C-----chHHHHHHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCC
Confidence 00 0 0 0 012333433334443344 367888999987543333345567899
Q ss_pred CCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy16872 300 TPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 300 ~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~ 346 (605)
..|.-.|.|+|.+.+| +||||+.++ +.+. =.|+.+..=+..
T Consensus 234 ~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~------D~p~~I~kKI~k 278 (392)
T 3jxe_A 234 YKTAALHSKFVPSLTSLSGKMSASKPETAIYLT------DSPEDVEKKVWK 278 (392)
T ss_dssp CCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTT------CCHHHHHHHHHT
T ss_pred CCCeeeecccccCCCCCccccccCCCCCeeeCC------CCHHHHHHHHHh
Confidence 8999899999999999 599999875 4442 357777776655
No 45
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.93 E-value=1.2e-05 Score=94.41 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=69.6
Q ss_pred EecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCC
Q psy16872 74 HFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVP 135 (605)
Q Consensus 74 ~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~ 135 (605)
.+|+|||.|||||+|+++....+||.+ .|.-++.+-.+|. ......+++.+.++|+.||+..
T Consensus 40 ~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~ 119 (878)
T 2v0c_A 40 MFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119 (878)
T ss_dssp CCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 447999999999999999999999864 4766666555542 1234678899999999999876
Q ss_pred C--CCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 136 D--ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 136 D--e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
| .... ...+++.+.-+....+|.++|++|.
T Consensus 120 Dw~~~~~-------T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 120 DWDREVT-------TCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp CGGGCCB-------TTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CcCCCee-------cCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 6 3210 1244566677888999999999996
No 46
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.85 E-value=3e-05 Score=84.18 Aligned_cols=71 Identities=10% Similarity=0.162 Sum_probs=50.0
Q ss_pred CCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.+-++|.-|.|...+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +.+. =.|+.+..-+...
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~------d~p~~i~~KI~~y 321 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMT------DTPKQIQKKINKY 321 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTT------CCHHHHHHHHHHH
T ss_pred CCceEEEeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEecc------CCHHHHHHHhhhh
Confidence 35788999999887655445666789998898899999999999 899999865 5553 2688888888763
Q ss_pred c
Q psy16872 348 G 348 (605)
Q Consensus 348 G 348 (605)
.
T Consensus 322 A 322 (432)
T 2ip1_A 322 A 322 (432)
T ss_dssp S
T ss_pred c
Confidence 3
No 47
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.81 E-value=1.9e-05 Score=92.57 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=68.9
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~ 134 (605)
..+|+|||.|||||+|++++...+||-+ .|.-++..-.+|. ......+++.|.++|+.||+.
T Consensus 59 ~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis 138 (880)
T 4arc_A 59 SMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFG 138 (880)
T ss_dssp ECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3457999999999999999999999964 5877776555442 112346688899999999987
Q ss_pred CCCCccCCCccCcccc--cccHHHHHHHHHHHHHCCCEee
Q psy16872 135 PDESETVGGNYGPYLQ--SKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 135 ~De~p~~~g~~gpy~Q--Ser~~~Y~~~a~~Li~~G~AY~ 172 (605)
.|-.- +|+. .++.+.-+....+|.++|.+|.
T Consensus 139 ~Dw~~-------~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 139 YDWSR-------ELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp CCGGG-------CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCC-------CEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 77210 1232 3455566778889999999997
No 48
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.79 E-value=2.7e-05 Score=90.64 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=58.5
Q ss_pred CcceEEcCCCCcccH-HHHHHHHHH-cCC-CCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 273 NISHVLRGVEWQIST-TKHILIYKA-FGW-TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 273 ~ITHVIRG~d~l~st-pkqi~ly~a-lG~-~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.++.-+-|.||+..= -..+++..+ +|- +.| .+.|+++++. +|+||||+.|+ +++.++.+. |.++|+|.|++..
T Consensus 603 p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~-yGaDalR~~ll~~ 680 (810)
T 1wkb_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMSL 680 (810)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHH-HCHHHHHHHHHHH
T ss_pred CceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHH-cChHHHHHHHHhc
Confidence 445445688886420 011222223 332 234 4788888665 89999999997 689999887 8999999999876
Q ss_pred cCCCCCCCCCCccccCCHHHHHH
Q psy16872 348 GGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 348 G~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .+ ..+..||.+.+..
T Consensus 681 ~-~~------~~d~~fs~~~~~~ 696 (810)
T 1wkb_A 681 A-EH------DSDFDWRRKEVGK 696 (810)
T ss_dssp C-CT------TCCEEECHHHHHH
T ss_pred C-CC------CCCcccCHHHHHH
Confidence 6 23 4556677765544
No 49
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=97.76 E-value=6.5e-05 Score=81.44 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=66.2
Q ss_pred cccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC--CChHHHH
Q psy16872 258 FPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD--MSVEAIR 331 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~--~sv~~~r 331 (605)
..+|-+--+.|-... +.++++-|.|...|--.=.-|.+.+|..+|.-.+.|+|.+.+|+||||+.++ +++.
T Consensus 168 ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~--- 244 (432)
T 2jan_A 168 EFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLWLD--- 244 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCBSS---
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeEEcc---
Confidence 445555555555555 8999999999998776666777888887777789999999999999999887 4443
Q ss_pred HcCCCHHHHHHHHHH
Q psy16872 332 NSEFLPNALINFVTN 346 (605)
Q Consensus 332 ~~G~~PeAl~nfla~ 346 (605)
+.=..|..+..++..
T Consensus 245 d~~tsp~~i~qki~~ 259 (432)
T 2jan_A 245 PQMTSPYAWYQYFVN 259 (432)
T ss_dssp TTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 233588888888864
No 50
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.73 E-value=8.4e-05 Score=79.50 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=52.1
Q ss_pred cceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc-cccccC--CCCChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 274 ISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS-KLSKRQ--GDMSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~-KLSKR~--g~~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
=++|--|.|...+--.=.-+.+.+|.+.|...|.|+|.+.+|. ||||++ +++.+.+ .|+.+..-+....
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kKI~k~A 296 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERKINKLA 296 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHHHHHHHHcCCCCceEeecCeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHHHHHhc
Confidence 4566679998754433345667899988988899999999995 999994 3455543 8999999887753
No 51
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=97.71 E-value=5e-05 Score=83.36 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=56.1
Q ss_pred CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
+-++|..|.|...+--.-.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +++. =.|+.+..=+....
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~------d~p~~i~kKi~~yA 376 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLT------DTAKQIKTKVNKHA 376 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTT------CCHHHHHHHHHHHS
T ss_pred CceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeec------CCHHHHHHHhcccc
Confidence 5588889999987766666667889998899999999999999 899999876 4553 36888888887633
No 52
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.68 E-value=7.8e-05 Score=79.96 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=42.2
Q ss_pred ceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 275 SHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 275 THVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
++|.-|.|...+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +.+. =.|+.+..=+...
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~------D~p~~i~kKI~k~ 292 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVN------DNEESIRNKIMKY 292 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTT------CCHHHHHHHHHHH
T ss_pred eecccccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEecc------CCHHHHHHHHHhh
Confidence 68889999876444334555678999999999999999999 799999865 5553 3788888888764
No 53
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00068 Score=72.23 Aligned_cols=198 Identities=18% Similarity=0.171 Sum_probs=121.1
Q ss_pred eEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----C-CC-CCCc---HHHH-HHHH----HHHHHcCCCCC
Q psy16872 73 KHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----T-DQ-TRFV---PEAV-EKLE----QDLKWIGVVPD 136 (605)
Q Consensus 73 ~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----T-D~-~R~~---~~~~-~~I~----~~L~wlGl~~D 136 (605)
+-|- .|||.|||||--.++.+|..-...|.+.++=|-| | |+ .+.. .+.. ..+. .++..+|++++
T Consensus 35 ~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~ 114 (375)
T 2cyc_A 35 QHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPK 114 (375)
T ss_dssp BEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGG
T ss_pred EEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4554 8999999999666888888888888777765555 2 32 1222 2233 3344 77888999887
Q ss_pred CCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCC
Q psy16872 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENS 216 (605)
Q Consensus 137 e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~ 216 (605)
... -+.||+-.+.. .+..-++. +-|.++-.++.. . +.|
T Consensus 115 k~~-------i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~~--~--------~~~-------------------- 152 (375)
T 2cyc_A 115 KVE-------FVLASEILEKG-DYWQTVID----ISKNVTLSRVMR--S--------ITI-------------------- 152 (375)
T ss_dssp GSE-------EEETHHHHTBH-HHHHHHHH----HHTTSBHHHHHH--T--------GGG--------------------
T ss_pred ceE-------EEEcchhhhhh-HHHHHHHH----HhceeEHHHHhc--c--------chh--------------------
Confidence 543 37888654432 22222221 113344333210 0 000
Q ss_pred CceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHH
Q psy16872 217 KYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKA 296 (605)
Q Consensus 217 ~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~a 296 (605)
. ++. .+|. -+=|..+|-.--+.|-...+.++|+-|.|...+--.=.-+.+.
T Consensus 153 ---------------k----~r~-------~~~~---i~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~l~rdla~r 203 (375)
T 2cyc_A 153 ---------------M----GRQ-------MGEA---IDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQK 203 (375)
T ss_dssp ---------------G----TCC-------CCTT---CBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGG
T ss_pred ---------------h----hhc-------cCCC---CChHHHHHHHHHHHHHHHhCCCeecccchHHHHHHHHHHHHHH
Confidence 0 000 0010 0124566666667777778999999999987543333345566
Q ss_pred cCC--------C-CCcEEEecceecCCC------------------ccccccCC--CCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 297 FGW--------T-PPKFAHLPLLLNLNG------------------SKLSKRQG--DMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 297 lG~--------~-~P~f~H~plil~~dg------------------~KLSKR~g--~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
+|. . .|...|.|+|.+.+| +||||+.+ ++.+.+ .|+.+..++...
T Consensus 204 ~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d------~p~~i~~KI~~A 277 (375)
T 2cyc_A 204 LRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHD------SPEEIRQKLRKA 277 (375)
T ss_dssp CSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTC------CHHHHHHHHHHS
T ss_pred hCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCC------CHHHHHHHHHHh
Confidence 776 3 677789999999998 89999973 456642 599999999873
No 54
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.51 E-value=0.00014 Score=76.77 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=117.3
Q ss_pred eEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CCC----CCcHHHHHHHHHHHHHcCCCCCCCccC
Q psy16872 73 KHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQT----RFVPEAVEKLEQDLKWIGVVPDESETV 141 (605)
Q Consensus 73 ~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~~----R~~~~~~~~I~~~L~wlGl~~De~p~~ 141 (605)
+.|- .|||.|||||.-.++.+|..-...|.+.++=|-|- |+. ....+..+.+..++..+|++++...
T Consensus 42 ~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~-- 119 (348)
T 2j5b_A 42 TAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTR-- 119 (348)
T ss_dssp EEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEE--
T ss_pred EEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceE--
Confidence 4454 89999999997677888887777777777755551 331 2334556677777778899887542
Q ss_pred CCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEE
Q psy16872 142 GGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIR 221 (605)
Q Consensus 142 ~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR 221 (605)
-+.||+-+..+..+...++ |....-.+..+. + ...+. + |
T Consensus 120 -----i~~qs~~~~~~~~~~~~~~-------~v~~~~~~~~m~-----~--~~~~~-----------------~-----r 158 (348)
T 2j5b_A 120 -----FIWASEFIASNPSYIERML-------DIAEFSTISRVK-----R--CCQIM-----------------G-----R 158 (348)
T ss_dssp -----EEEHHHHHHHCHHHHHHHH-------HHHHHHHHHHHT-----C-------------------------------
T ss_pred -----EEECCHhhhhhhHHHHHHH-------HHHhheeHHHHH-----h--hhhhh-----------------h-----h
Confidence 2678873221111111111 111111111110 0 00000 0 0
Q ss_pred EEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcC---CcceEEcCCCCcccHHHHHHHHHHcC
Q psy16872 222 FKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHM---NISHVLRGVEWQISTTKHILIYKAFG 298 (605)
Q Consensus 222 ~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m---~ITHVIRG~d~l~stpkqi~ly~alG 298 (605)
.. +|.+ +=|..+|-.--+.|-... +.++|+-|.|...+--.=.-+.+.+|
T Consensus 159 --~~----------------------~~~i---~~g~f~YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~~ 211 (348)
T 2j5b_A 159 --NE----------------------SDCL---KASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRG 211 (348)
T ss_dssp -------------------------------------CCHHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTT
T ss_pred --hc----------------------cCCc---ChHHHhhHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHhC
Confidence 00 0100 124555655556665566 89999999998765444445567899
Q ss_pred CCCCcEEEecceecC-CC-ccccccCC--CCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 299 WTPPKFAHLPLLLNL-NG-SKLSKRQG--DMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 299 ~~~P~f~H~plil~~-dg-~KLSKR~g--~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
...|...|.|+|.+. +| +||||+.+ ++.+. =.|+.+..=+...
T Consensus 212 ~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~------d~p~~i~kKI~ka 258 (348)
T 2j5b_A 212 LKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMD------DTEQEVSEKISRA 258 (348)
T ss_dssp CCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTT------CCHHHHHHHHHHS
T ss_pred CCCceeecCccccCCCCcccccccCCCCCeEeec------CCHHHHHHHHhcc
Confidence 988988999999998 67 69999973 46664 3788888888763
No 55
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.48 E-value=9.3e-05 Score=79.61 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=52.9
Q ss_pred CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCC--CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQG--DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g--~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
+.++|.-|.|...+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.+ ++.+. =.|+.+..=+..
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~------D~p~~I~kKI~k 314 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLD------DAQDTIRKKIIA 314 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTT------CCHHHHHHHHHH
T ss_pred CCeEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCC------CCHHHHHHHHHh
Confidence 5678889999875544344566789999998889999999999 69999973 46664 378888887766
No 56
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.45 E-value=0.00013 Score=86.22 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=61.3
Q ss_pred CcceEEcCCCCcccHHHHHHHHHH---cCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKA---FGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~a---lG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-.+..+-|.||+.. -.|..++.+ .|..|+ .+.| +++++.+|+||||+.|+ ++..++.+. |.++|+|.|++.
T Consensus 548 P~Dl~~~G~D~~r~-wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls 624 (917)
T 1ffy_A 548 PADMYLEGSDQYRG-WFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSS 624 (917)
T ss_dssp SBSEEEEEGGGGTT-HHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHT
T ss_pred CceEEEEEeccccc-HHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhc
Confidence 34555668887632 234333333 355443 2455 88888899999999998 689999987 999999999986
Q ss_pred hcCCCCCCCCCCccccCCHHHHHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .+ ..+..||.+.+..
T Consensus 625 -~-~~------~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 625 -T-DY------LADVRISDEILKQ 640 (917)
T ss_dssp -S-CT------TSCEECCHHHHHH
T ss_pred -c-CC------CCCcccCHHHHHH
Confidence 4 23 4567788887765
No 57
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=97.41 E-value=0.00013 Score=76.28 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=62.7
Q ss_pred cccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHH
Q psy16872 258 FPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRN 332 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~ 332 (605)
..+|-.--+.|-... +.+.++-|.|...+--.-.-|.+.+|..+|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 172 ~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n~I~L~d--- 248 (322)
T 2yxn_A 172 EFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDP--- 248 (322)
T ss_dssp HHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSST---
T ss_pred hhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCCeeeccC---
Confidence 444544445554455 7887778999987666666677788877776788999999999999999875 45543
Q ss_pred cCCCHHHHHHHHHH
Q psy16872 333 SEFLPNALINFVTN 346 (605)
Q Consensus 333 ~G~~PeAl~nfla~ 346 (605)
.=..|+.+..++..
T Consensus 249 ~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 249 KKTSPYKFYQFWIN 262 (322)
T ss_dssp TTSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 33678888888854
No 58
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=97.40 E-value=0.00035 Score=74.38 Aligned_cols=192 Identities=19% Similarity=0.198 Sum_probs=107.9
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC----CCCCC----cHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT----DQTRF----VPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT----D~~R~----~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.|||.|||||.-.++.++.+- +.|...++=|-|- .+.-. ..........++-.+|++++... -|
T Consensus 78 ~PTG~lHLGhyv~~~~~~~lq-~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~-------if 149 (372)
T 3a04_A 78 MPSGKFHFGHKLTVDQLIYLQ-KNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE-------FY 149 (372)
T ss_dssp CCCSCCBHHHHHHHHHHHHHH-HTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE-------EE
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc-------hh
Confidence 899999999999777665544 4566776656552 22111 23444555667778899998764 37
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
+||+...-|.+.+..+ .|..+-.+++... + ..+.....-
T Consensus 150 ~qS~~~~~~~~l~~~~-------~~~~~~~~~~~~~------~----------~~~~~~~~y------------------ 188 (372)
T 3a04_A 150 FQTNRGTPYFRLIQLF-------SGKVTAAEMEAIY------G----------ELTPAKMMA------------------ 188 (372)
T ss_dssp EGGGSCHHHHHHHHHH-------TTSSCHHHHHHHH------S----------SCCHHHHHH------------------
T ss_pred hhccchHHHHHHHHHH-------HhhhhHHHHhhhh------h----------ccCcccccC------------------
Confidence 8998665554444333 2555555443210 0 011111000
Q ss_pred cceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC----CCCCcE
Q psy16872 229 ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG----WTPPKF 304 (605)
Q Consensus 229 ~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG----~~~P~f 304 (605)
.+.. ..|.++...|....| .=+||=.|.|....--.-.-+.+.|| ++.|.-
T Consensus 189 ---------P~lq-----AaDil~~~~d~~~gy-----------~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~ 243 (372)
T 3a04_A 189 ---------SLTQ-----AADILHVQLDEYGGY-----------RHVVVPVGADQDPHLRLTRDLADRMAGVVELERPAS 243 (372)
T ss_dssp ---------HHHH-----HHHHHGGGSGGGTCC-----------CCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEE
T ss_pred ---------Ccch-----hHHHhhhcCccccCc-----------cceecccchhhHHHHHHHHHHHHHhcCcccccChhh
Confidence 0000 012222222212222 23577789987632111123344565 677888
Q ss_pred EEecceecCCCccccccCCCCChHHHHHcCCCHHHHHHHHHH
Q psy16872 305 AHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 305 ~H~plil~~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.|.+++-+.+|.||||+.++.+|. .-=.|+.+..=+..
T Consensus 244 ~~~~~~pgldG~KmS~S~~ns~I~----l~D~p~~i~kKI~k 281 (372)
T 3a04_A 244 TYHKLQPGLDGRKMSSSRPDSTIF----LTDPPEVARNKLFR 281 (372)
T ss_dssp EEECCCBCTTSSBCCTTSGGGSCB----TTCCHHHHHHHHHT
T ss_pred hhhcccCCCCCCccCCCCCCcccc----cCCCHHHHHHHHhc
Confidence 999998899999999998664431 11268888887765
No 59
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=97.35 E-value=0.00029 Score=76.47 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=51.9
Q ss_pred cceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy16872 274 ISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-++|--|.|...+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +++. =.|+.+..-+..
T Consensus 257 ~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~------D~p~~I~kKI~~ 327 (437)
T 1r6u_A 257 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLT------DTAKQIKTKVNK 327 (437)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTT------CCHHHHHHHHHH
T ss_pred ceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeecc------CCHHHHHHHhhc
Confidence 467778999876544444555778988899899999999999 899999876 4554 368888888876
No 60
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.28 E-value=0.00012 Score=78.63 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=42.3
Q ss_pred cceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCC-CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 274 ISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQG-DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g-~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-++|..|.|...+--.=.-+.+.+|.+.|...|.|+|.+.+| +||||+.+ ++.+.+ .|+.+..-+..
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D------~p~~i~kKI~k 294 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTD------TEKMVKDKINK 294 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-------------CCBTTC------CHHHHHHHHC-
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCCCCcccCCC------CHHHHHHHHHh
Confidence 567889999876544444566778999998899999999999 79999954 355543 78888877754
No 61
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=97.27 E-value=0.00082 Score=72.64 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=64.9
Q ss_pred cccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHc-CCCCCcEEEecceecCCCccccccCCC-CChHHHH
Q psy16872 258 FPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAF-GWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIR 331 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~al-G~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r 331 (605)
..+|-+--+.|-... +.++++-|.|...|--.=.-|.+.+ |..+|.-.+.|+|.+.+|+||||+.++ +++.
T Consensus 167 ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~--- 243 (420)
T 1jil_A 167 EFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLD--- 243 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSS---
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCeEecC---
Confidence 345555555665556 8999999999987766666777888 877777799999999999999999875 4443
Q ss_pred HcCCCHHHHHHHHHH
Q psy16872 332 NSEFLPNALINFVTN 346 (605)
Q Consensus 332 ~~G~~PeAl~nfla~ 346 (605)
+.=.+|+.+..++..
T Consensus 244 d~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 244 AEKTSPYEFYQFWIN 258 (420)
T ss_dssp TTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 223578888888864
No 62
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.00024 Score=84.35 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=59.1
Q ss_pred CcceEEcCCCCcccH-HHHHHHHHH-cCC-CCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 273 NISHVLRGVEWQIST-TKHILIYKA-FGW-TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 273 ~ITHVIRG~d~l~st-pkqi~ly~a-lG~-~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.++..+-|.|++..= -..+++..+ +|- +.| .+.|+++++. +|+||||+.|+ +++.++.+. |.++|+|.|++..
T Consensus 603 P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~-yGaDalR~~ll~~ 680 (967)
T 1wz2_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMSL 680 (967)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHT-TCHHHHHHHHHHH
T ss_pred CCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHH-hChHHHHHHHHhC
Confidence 344445688886420 011122233 342 234 5788888776 89999999998 689999987 9999999999876
Q ss_pred cCCCCCCCCCCccccCCHHHHHH
Q psy16872 348 GGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 348 G~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .+ ..+..||.+.+..
T Consensus 681 ~-~~------~~d~~fs~~~~~~ 696 (967)
T 1wz2_A 681 A-EH------DSDFDWRRKEVGK 696 (967)
T ss_dssp C-CT------TCCEEECHHHHHH
T ss_pred C-CC------CCCcccCHHHHHH
Confidence 6 22 4556677765544
No 63
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.21 E-value=0.00094 Score=71.12 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=63.3
Q ss_pred CcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecC-CCc-cccccCC--CCChHHHH
Q psy16872 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNL-NGS-KLSKRQG--DMSVEAIR 331 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~-dg~-KLSKR~g--~~sv~~~r 331 (605)
|..+|-+--+.|-...+.++|+-|.|...+--.=.-+.+.+|.. .|.+.|.|+|.+. ||+ ||||+.+ ++.+.
T Consensus 184 g~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~--- 260 (373)
T 3vgj_A 184 SQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD--- 260 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT---
T ss_pred HHHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecC---
Confidence 45566666667777788999999999875433334566778876 5888999999995 995 9999985 45553
Q ss_pred HcCCCHHHHHHHHHHh
Q psy16872 332 NSEFLPNALINFVTNF 347 (605)
Q Consensus 332 ~~G~~PeAl~nfla~l 347 (605)
=.|+.+..-+...
T Consensus 261 ---D~p~~i~~KI~kA 273 (373)
T 3vgj_A 261 ---DSESDVNRKIKKA 273 (373)
T ss_dssp ---CCHHHHHHHHHHS
T ss_pred ---CCHHHHHHHHHhC
Confidence 4788888888764
No 64
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=97.17 E-value=0.00073 Score=73.53 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=117.4
Q ss_pred eeEec--CCC-CcCChhhHHHHH-HHHHHHHHcCCeEEEeccCC-----CCC---CCcHHHHHHHHHHHHHcCCCCCCCc
Q psy16872 72 LKHFL--TST-GLLHLGGLRTAL-YNYLFAKSHNGSFILRIEDT-----DQT---RFVPEAVEKLEQDLKWIGVVPDESE 139 (605)
Q Consensus 72 v~~fp--~Pt-G~LHiG~~RtAL-~n~l~Ar~~~G~fiLRiEDT-----D~~---R~~~~~~~~I~~~L~wlGl~~De~p 139 (605)
++-|- .|| |.|||||+-.++ .+| +-+..|..+++-|-|- .+. -.+.+....+..++-.+|++++...
T Consensus 92 ~~vytG~dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~ 170 (451)
T 3foc_A 92 IYIYTGRGPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTF 170 (451)
T ss_dssp EEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred eEEEecCCCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Confidence 45665 899 899999999998 788 5666677788888773 111 1233444456666666799876432
Q ss_pred cCCCccCcccccccHH--HHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH----HHH-
Q psy16872 140 TVGGNYGPYLQSKRLA--LYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID----EKL- 212 (605)
Q Consensus 140 ~~~g~~gpy~QSer~~--~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~----~~~- 212 (605)
-+.||+-.. .|.+.+-.|- |..|-.++.. .. + +. ..++..+.. +..
T Consensus 171 -------i~~nSd~~~~~~~~~~l~~L~-------r~~Tv~~m~~--~~----~----f~---~~is~gef~YPlLQAaD 223 (451)
T 3foc_A 171 -------IFINSQYLSLKNRYRFSCLVD-------RMLPISQLRA--SF----G----FS---NDANVGYAAFPPKQMLP 223 (451)
T ss_dssp -------EEEHHHHTTSTTHHHHHHHHH-------HTCCHHHHHH--HH----C----CC---SSSCHHHHTCHHHHHGG
T ss_pred -------EEeCchhhcchhHHHHHHHHH-------hhCCHHHHHh--hc----c----cC---CCCchHHHhhHHHHHHH
Confidence 367887653 3444443332 3334333321 11 1 11 123443321 100
Q ss_pred -----hcCCCceEEEEcCCCc-cceeccccceeeec--C-CCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCC
Q psy16872 213 -----KENSKYCIRFKLTNHT-ESWQDLVYGDISYN--V-FHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEW 283 (605)
Q Consensus 213 -----~~g~~~~iR~k~~~~~-~~~~D~v~G~i~~~--~-~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~ 283 (605)
..|.+++ .||.+. ..=+|.-+ -++.. . +....|.++.+.|-.|.- |-. -.|..-.-++|.-|.|.
T Consensus 224 il~~~~d~~~~~---~vp~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~-~~~~~~~~~~VPvG~DQ 297 (451)
T 3foc_A 224 VYSTYFDGLPFT---RVPLPVGTGNEDAAD-AVSTKKASKKTPKKDAVLSPVHVVEEL-FPD-SKRYQKAMCLIASGIEQ 297 (451)
T ss_dssp GSGGGGTTSGGG---CCBCC--------------------------CCCCHHHHHHHH-CGG-GGGBCCCEEEEEECTTT
T ss_pred HHHhhcCCCCcc---ccccccccccchhhh-hhhhhhccccccchhhhhhhcccchhh-ccc-ccccccccceeeeecch
Confidence 1233332 123220 00001000 01110 0 001123333332211100 000 00111122367789998
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEecceecCCCc--cccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 284 QISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS--KLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 284 l~stpkqi~ly~alG~~~P~f~H~plil~~dg~--KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
..+--.-.-+.+.||++.|...|.|+|.+.+|. ||||+.++ +.+. =.|+.+..=+...
T Consensus 298 ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~------D~p~~I~kKI~k~ 359 (451)
T 3foc_A 298 DPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLT------DTPAQIKNKINRY 359 (451)
T ss_dssp HHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTT------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeec------CCHHHHHHHHhhh
Confidence 743222223445689988998999999999985 99999975 4442 4788888888774
No 65
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=97.07 E-value=0.00046 Score=74.54 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=63.3
Q ss_pred cccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHc-CCCCCcEEEecceecCCCccccccCCC-CChHHHH
Q psy16872 258 FPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAF-GWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIR 331 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~al-G~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r 331 (605)
..+|-+--+.|-... +.++++-|.|...|--.=.-|.+.+ |..+|.-.+.|+|.+.+|+||||+.|+ +++.
T Consensus 166 ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~naI~L~--- 242 (419)
T 2ts1_A 166 EFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLD--- 242 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSS---
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCeEecC---
Confidence 345555555665556 8999999999987766666677888 877777789999999999999999875 4443
Q ss_pred HcCCCHHHHHHHHHH
Q psy16872 332 NSEFLPNALINFVTN 346 (605)
Q Consensus 332 ~~G~~PeAl~nfla~ 346 (605)
+.=.+|..+..++..
T Consensus 243 d~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 243 KEKTSPYEFYQFWIN 257 (419)
T ss_dssp TTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 223578888888864
No 66
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=97.01 E-value=0.00054 Score=73.30 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=107.0
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||.-.|+.||..-. .|.+.++=|-| .|++ ...+....+..++..+||+++... -|+
T Consensus 43 ~PTG~lHLGhyvGal~~~~~LQ-~~~~~~~~IaD~hAlt~~~~~~-~lr~~~~~~aa~~lA~GlDp~kt~-------if~ 113 (388)
T 3prh_A 43 QPSGSVTLGNYIGAMKQFVELQ-HDYNSYFCIVDQHAITVPQDRL-ELRKNIRNLAALYLAVGLDPEKAT-------LFI 113 (388)
T ss_dssp CCCSCCBHHHHHHTHHHHHHTT-TTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEE-------EEE
T ss_pred CCCCcchHHHHHHHHHHHHHHH-ccCcEEEEEecceeeecCCCHH-HHHHHHHHHHHHHHHhCCChhHeE-------EEe
Confidence 8999999999999999986543 35555554433 2222 234455667777788999998754 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+-.+. .+.+-.| -|..+-.+|+. .+.|... .+.+
T Consensus 114 qS~v~~~-~el~w~l-------~~~~~~~~L~R----------~~~fk~k------------~~~~-------------- 149 (388)
T 3prh_A 114 QSEVPAH-AQAGWMM-------QCVAYIGELER----------MTQFKDK------------SKGN-------------- 149 (388)
T ss_dssp GGGSTHH-HHHHHHH-------HTTSCHHHHHT----------TC-----------------------------------
T ss_pred cccccch-HHHHHHH-------HhhccHHHHHh----------hhhHhHH------------hhcc--------------
Confidence 9987653 2332222 37777665531 0112100 0000
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC--CCcEEEe
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT--PPKFAHL 307 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~--~P~f~H~ 307 (605)
|. -+=|..+|=.--+.|-...+.++|.-|+|...+--.=.-+.+.||.. .+.-.+-
T Consensus 150 -------------------~~---~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~ 207 (388)
T 3prh_A 150 -------------------EA---VVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPE 207 (388)
T ss_dssp --------------------C---CBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCE
T ss_pred -------------------CC---CcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccch
Confidence 00 01145556555666777789999999999874322222344455522 1111232
Q ss_pred cce-------ecC-CC-ccccccCC----CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 308 PLL-------LNL-NG-SKLSKRQG----DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 308 pli-------l~~-dg-~KLSKR~g----~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
|+| .+. +| +||||+.. .+.+. =.|+.+..=+..
T Consensus 208 ~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~------D~p~~I~kKI~k 253 (388)
T 3prh_A 208 VKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLL------DEPKQLEKKIKS 253 (388)
T ss_dssp ECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTT------CCHHHHHHHHHT
T ss_pred hhhcccccccccCCCCCCccCCCCCCCCCeeecC------CCHHHHHHHHhh
Confidence 332 343 44 69999983 34443 367777777755
No 67
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=96.98 E-value=0.00062 Score=71.70 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=107.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||.-.|+-+|..-.. +.+.++=|-| .|+ ....+....+..++..+||+++... -|+
T Consensus 14 ~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~-~~~~~~~~~~~~~~lA~GlDp~k~~-------i~~ 84 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDP-QALHEATLDALAICLAVGVDPKKST-------LFV 84 (341)
T ss_dssp CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCH-HHHHHHHHHHHHHHHHTTCCTTTSE-------EEE
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCH-HHHHHHHHHHHHHHHHcCCChhhcE-------EEe
Confidence 89999999999999988853333 3444443333 222 2244555667777888899998754 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+-.+...-+. .| .|.++.-+|+.+.. | .+...+. +
T Consensus 85 qS~v~~~~el~~-~l-------~~~~~~~~l~R~~~----------~---------k~~~~~~--~-------------- 121 (341)
T 3sz3_A 85 QSHVPEHAQLGW-VL-------NCYTQMGELSRMTQ----------F---------KDKSARY--A-------------- 121 (341)
T ss_dssp GGGCTHHHHHHH-HH-------HTTSCHHHHHTCHH----------H---------HHHHHHH--G--------------
T ss_pred ccchhhhHHHHH-HH-------HhhccHHHHHHHHH----------H---------HHHHhhc--c--------------
Confidence 998765332221 13 37888777653210 0 0000000 0
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC--CC-------
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG--WT------- 300 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG--~~------- 300 (605)
+ . -+=|..+|=.--+.|-...+.++|.-|.|...+--.=.-+.+.|| +.
T Consensus 122 ---~----------~---------~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~ 179 (341)
T 3sz3_A 122 ---N----------D---------VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFT 179 (341)
T ss_dssp ---G----------G---------CCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSC
T ss_pred ---C----------C---------CChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccc
Confidence 0 0 001344555555566667889999999998743222223444454 21
Q ss_pred CCcE-EE--ecceecC-CC-ccccccCC----CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 301 PPKF-AH--LPLLLNL-NG-SKLSKRQG----DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 301 ~P~f-~H--~plil~~-dg-~KLSKR~g----~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.|.- .+ .+.|.+. +| +||||+.. .+.+. =.|+.+..=+..
T Consensus 180 ~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~------D~p~~i~kKI~~ 228 (341)
T 3sz3_A 180 IPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLL------EDPKSIIKKINK 228 (341)
T ss_dssp CCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTT------CCHHHHHHHHHT
T ss_pred cChhhhccCcccccCCCCCCCccCCCCCCCCCeeecC------CCHHHHHHHhhh
Confidence 2321 11 2445555 57 59999984 34443 367777777765
No 68
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=96.97 E-value=0.0015 Score=68.92 Aligned_cols=190 Identities=16% Similarity=0.195 Sum_probs=107.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||.-.++-+|..- +.+.+.++=|-| .|++ ...+....+..++..+|++++... -|+
T Consensus 23 ~PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~-------if~ 93 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKKST-------IFV 93 (346)
T ss_dssp CSCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTTSE-------EEE
T ss_pred CCCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccceE-------EEe
Confidence 899999999999999888532 234455443333 2332 234555667777888999998754 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+-.+...-+- - +.|.++-.+|+.+.. | .+ +.....
T Consensus 94 qS~v~~~~el~~-~-------l~~~~~~~~l~R~~~----------~---------k~---~~~~~~------------- 130 (346)
T 3n9i_A 94 QSHVPEHSQLSW-A-------LNCYTYFGELSRMTQ----------F---------KD---KSARYA------------- 130 (346)
T ss_dssp GGGCTHHHHHHH-H-------HHTTSBHHHHHTCHH----------H---------HH---HHHHSG-------------
T ss_pred ccccccchHHHH-H-------HHHHhhHHHHHHHHH----------H---------HH---HHhccC-------------
Confidence 998654332211 1 237777666642210 0 00 000000
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPK 303 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~ 303 (605)
| + -+=|..+|=.--+.|-...+.++|.-|.|...+--.=.-+.+.|| +..|.
T Consensus 131 ---~--------------~-----~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~ 188 (346)
T 3n9i_A 131 ---E--------------N-----INAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPE 188 (346)
T ss_dssp ---G--------------G-----CBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCE
T ss_pred ---C--------------C-----CCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHHHHhccccCCcccccc
Confidence 0 0 011344555555666667889999999998643222223444455 22333
Q ss_pred EE---EecceecC-CCc-cccccCCC----CChHHHHHcCCCHHHHHHHHHH
Q psy16872 304 FA---HLPLLLNL-NGS-KLSKRQGD----MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 304 f~---H~plil~~-dg~-KLSKR~g~----~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-. |.+.+.+. ||+ ||||+.++ +.+. =.|+.+..=+..
T Consensus 189 ~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~------D~p~~i~kKI~k 234 (346)
T 3n9i_A 189 PFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL------EDPKSVVKKIKR 234 (346)
T ss_dssp ECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT------SCHHHHHHHHHT
T ss_pred hhccCCcccCccCCCCccccCCCCCCCCceecCC------CCHHHHHHHHHh
Confidence 11 22455565 775 99999864 4443 367888777765
No 69
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.77 E-value=0.012 Score=67.30 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=63.4
Q ss_pred CcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecC-CCc-cccccCC--CCChHHHH
Q psy16872 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNL-NGS-KLSKRQG--DMSVEAIR 331 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~-dg~-KLSKR~g--~~sv~~~r 331 (605)
|..+|-+--+.|-...+.++|.-|.|...+--.=.-+.+.+|.. .|...|.|+|.+. ||+ ||||+.+ ++.+.
T Consensus 167 g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~--- 243 (690)
T 3p0j_A 167 AQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME--- 243 (690)
T ss_dssp SCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT---
T ss_pred hhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc---
Confidence 46667666677777788999999999875433334556778876 5788899999998 895 9999986 35553
Q ss_pred HcCCCHHHHHHHHHHh
Q psy16872 332 NSEFLPNALINFVTNF 347 (605)
Q Consensus 332 ~~G~~PeAl~nfla~l 347 (605)
=.|+.+..-+...
T Consensus 244 ---D~p~~i~kKI~~A 256 (690)
T 3p0j_A 244 ---DTEEDVARKIRQA 256 (690)
T ss_dssp ---CCHHHHHHHHHTS
T ss_pred ---CCHHHHHHHHHhC
Confidence 4788888887653
No 70
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=96.28 E-value=0.0062 Score=65.21 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=59.3
Q ss_pred CcccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHc-----------------CCCCCcEEEecceecCCC
Q psy16872 257 GFPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAF-----------------GWTPPKFAHLPLLLNLNG 315 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~al-----------------G~~~P~f~H~plil~~dg 315 (605)
|..+|-+--+.|-... +.++|+-|.|...|--.=+-|.+.+ |+.+|.-.+.|+|.+.+|
T Consensus 212 gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG 291 (392)
T 1y42_X 212 AEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG 291 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch
Confidence 3456655556655444 6999999999976544433343332 335566789999999999
Q ss_pred ccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 316 SKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 316 ~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
+||||+.++ +++.+ .=-+|..+..|+..
T Consensus 292 ~KMSKS~~naI~L~d---~~tsp~~i~qki~~ 320 (392)
T 1y42_X 292 AKFGKSAGNAIWLDP---YQTSVFDFYGYFVR 320 (392)
T ss_dssp CBTTBCSSSBCBSST---TTSCHHHHHHHHHT
T ss_pred hhccCCCCCeeeccC---CCCCHHHHHHHHHc
Confidence 999999765 44432 22588888888865
No 71
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=95.68 E-value=0.021 Score=67.45 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=67.0
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC--------------CC--------------CcHHHHH
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ--------------TR--------------FVPEAVE 122 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~--------------~R--------------~~~~~~~ 122 (605)
.-+|+|||.|||||+++.+....+||.+ .|.-++.+-.+|- .+ .+.++++
T Consensus 54 ~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~~ 133 (917)
T 1ffy_A 54 DGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIE 133 (917)
T ss_dssp CCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHHH
Confidence 3447999999999999999999999964 5766665544441 11 2456788
Q ss_pred HHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 123 KLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 123 ~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
.+.++|+.||+ +||.. |+.. ++...-+....+|.++|.+|+
T Consensus 134 ~~~~~~~rlG~~~Dwd~~---------~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 134 LQKKDFRRLGVRGDFNDP---------YITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHTTTCCSCTTSC---------EETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCeEEccCCC---------eEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 99999999999 58763 4444 233344567779999999997
No 72
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=94.08 E-value=0.082 Score=61.46 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=65.5
Q ss_pred cCCCCcCChhhHHHHHHHHHHHH--HcCCeEEEeccCCCCC---------------------------------------
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAK--SHNGSFILRIEDTDQT--------------------------------------- 114 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar--~~~G~fiLRiEDTD~~--------------------------------------- 114 (605)
|+|||.|||||+|+++....+|| ...|.-++++=.+|.-
T Consensus 43 Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 122 (810)
T 1wkb_A 43 PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDP 122 (810)
T ss_dssp CBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSH
T ss_pred CCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 59999999999999999999999 4569888886433220
Q ss_pred -CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccc----cHHHHHHHHHHHHHCCCEee
Q psy16872 115 -RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK----RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 115 -R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSe----r~~~Y~~~a~~Li~~G~AY~ 172 (605)
..+..+.+.+.++|++||+..|=. .+|+.++ +.+.-+....+|.++|.+|+
T Consensus 123 ~~~~~~~~~~~~~~~~~lgi~~Dw~-------~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 123 INIVKYFMKAAKETFIRAGFSVDWS-------REFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCGG-------GCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHhCeEEecC-------CceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 112345578999999999877621 1355555 33344667789999999986
No 73
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=93.82 E-value=0.088 Score=62.50 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=64.4
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC--------------------------------------
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD-------------------------------------- 112 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD-------------------------------------- 112 (605)
.-+|+|||.||+||+++.+....+||.+ .|.-+|+.=..|
T Consensus 40 ~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 119 (967)
T 1wz2_A 40 VAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTF 119 (967)
T ss_dssp ECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGG
T ss_pred eCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHH
Confidence 3447999999999999999999999964 576666542221
Q ss_pred --CCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccc----cHHHHHHHHHHHHHCCCEee
Q psy16872 113 --QTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK----RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 113 --~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSe----r~~~Y~~~a~~Li~~G~AY~ 172 (605)
+...+..+.+.+.+.|+.||+..|=. .+|...+ +...-+....+|.++|++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~-------r~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 120 EDPINIVKYFMKAAKETFIRAGFSVDWS-------REFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp GSHHHHHHHHHHHHHHHHHTTTCCCCTT-------SCCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceEecC-------CCeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 11123455678999999999854421 1355554 33344566778999999997
No 74
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=92.81 E-value=0.2 Score=58.89 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=64.5
Q ss_pred hcCCcceEEcCCCCcccH-----HHHHHHHHHcCC---CCC--cEEEeccee-------cCCCc----------------
Q psy16872 270 HHMNISHVLRGVEWQIST-----TKHILIYKAFGW---TPP--KFAHLPLLL-------NLNGS---------------- 316 (605)
Q Consensus 270 ~~m~ITHVIRG~d~l~st-----pkqi~ly~alG~---~~P--~f~H~plil-------~~dg~---------------- 316 (605)
..|-++.-|-|.||...- -.+..|+ .+|. ..| ...+.+|++ +.+|+
T Consensus 540 ~~~PvD~yigG~EHailHllyaRf~~~~L~-~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~ 618 (880)
T 4arc_A 540 YWLPVDIYIGGIEHAIMHLLYFRFFHKLMR-DAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEK 618 (880)
T ss_dssp HHCSEEEEECCGGGTTTHHHHHHHHHHHHH-HTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTT
T ss_pred ccCCceEeecchhhHHHHHHHHHHHHHHHH-HhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccc
Confidence 457788888888885422 1222232 3453 456 345567876 67777
Q ss_pred --------------------cccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 317 --------------------KLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 317 --------------------KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||||+.|+ +++.++.++ |.++|+|-|++..+ .+ +.+..||.+.+..
T Consensus 619 ~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-YGADalRl~ll~~~-~~------~~dl~~s~~~ie~ 685 (880)
T 4arc_A 619 GRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-YGADTVRLFMMFAS-PA------DMTLEWQESGVEG 685 (880)
T ss_dssp CCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSS-CT------TSCEECCHHHHHH
T ss_pred cccccccccCCccccccccccccCcCCCCCCHHHHHHH-cCchHHHHHHHhcC-CC------CCCcccCHHHHHH
Confidence 99999998 689999998 99999999999886 22 4556677776654
No 75
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=91.64 E-value=0.052 Score=57.32 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=54.0
Q ss_pred CcccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC-CChHHHH
Q psy16872 257 GFPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIR 331 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r 331 (605)
|..+|-.--+.|-... +.++|+-|.|...+--.=.-|.+.+|..+|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 190 g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d-- 267 (356)
T 2pid_A 190 AEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR-- 267 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST--
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCeeeccC--
Confidence 4556665566666666 9999999999987665556677888887777789999999999999999764 45542
Q ss_pred HcCCCHHHHHHHHHH
Q psy16872 332 NSEFLPNALINFVTN 346 (605)
Q Consensus 332 ~~G~~PeAl~nfla~ 346 (605)
.=..|+.+..++..
T Consensus 268 -~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 268 -DKTSPFELYQFFVR 281 (356)
T ss_dssp -TTSCHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHc
Confidence 22478888888864
No 76
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=90.73 E-value=0.47 Score=55.75 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=39.0
Q ss_pred ccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 316 SKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 316 ~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+||||+.|+ ++..++.++ |.++|+|.|++..+ .+ ..+..||.+.+..
T Consensus 636 ~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~-~~------~~D~~fs~~~v~~ 683 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-QGADIARITILFAA-PP------ENEMVWTEEGVQG 683 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHS-CT------TSCEEECHHHHHH
T ss_pred HHhhccCCCcccHHHHHHH-cCccHHHHHHhccC-CC------CCCceeCHHHHHH
Confidence 899999998 689999988 99999999999876 22 4566788887655
No 77
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=49.35 E-value=33 Score=39.10 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=43.9
Q ss_pred CCCcCChhhHHHHHH--HHHHHHHcCCeEEEeccCC-----CCC-CC---cHHHHHHHHHHHHHcCCCCCCCccCCCccC
Q psy16872 78 STGLLHLGGLRTALY--NYLFAKSHNGSFILRIEDT-----DQT-RF---VPEAVEKLEQDLKWIGVVPDESETVGGNYG 146 (605)
Q Consensus 78 PtG~LHiG~~RtAL~--n~l~Ar~~~G~fiLRiEDT-----D~~-R~---~~~~~~~I~~~L~wlGl~~De~p~~~g~~g 146 (605)
|||.|||||+--.+. +-..--..|++.++=|-|- |+. .+ +..+......++.-+|++. ...
T Consensus 390 s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~-k~~------- 461 (690)
T 3p0j_A 390 ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPS-SVK------- 461 (690)
T ss_dssp CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCT-TSE-------
T ss_pred CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-CeE-------
Confidence 899999999988776 2222222488888877664 321 22 3345566777888899974 221
Q ss_pred cccccccH
Q psy16872 147 PYLQSKRL 154 (605)
Q Consensus 147 py~QSer~ 154 (605)
-++||+-.
T Consensus 462 fv~~S~~~ 469 (690)
T 3p0j_A 462 IVTENEVI 469 (690)
T ss_dssp EEEHHHHH
T ss_pred EEECCchh
Confidence 26788643
No 78
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=47.93 E-value=16 Score=38.33 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=28.4
Q ss_pred eeEec--CCCCc-CChhhHHHHHHHHHHHHHcCCeEEEeccC
Q psy16872 72 LKHFL--TSTGL-LHLGGLRTALYNYLFAKSHNGSFILRIED 110 (605)
Q Consensus 72 v~~fp--~PtG~-LHiG~~RtAL~n~l~Ar~~~G~fiLRiED 110 (605)
.+-|- .|||. |||||+- ++.+|..-...|.+.++=|-|
T Consensus 47 ~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD 87 (356)
T 2pid_A 47 QTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGG 87 (356)
T ss_dssp CEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECT
T ss_pred CEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEcc
Confidence 35554 89996 9999954 888888877777776665554
No 79
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=41.88 E-value=9.4 Score=42.41 Aligned_cols=27 Identities=11% Similarity=-0.101 Sum_probs=19.4
Q ss_pred cccccccccccccccccccccccccccc
Q psy16872 375 NATYNRIKPTIKEFGIFWFQTFFNEFDL 402 (605)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 402 (605)
+|+++|+|+++.|+| ...+++.....+
T Consensus 343 ~av~d~~Kl~~~N~~-~~~~~~~~p~~p 369 (553)
T 1qtq_A 343 MAVIDPVKLVIENYQ-GEGEMVTMPNHP 369 (553)
T ss_dssp CEESSEEEEEBTTCC-SSCEEEEEESCS
T ss_pred cceeccceEEEEcCC-CceEEEEecCCC
Confidence 489999999999998 545555333433
No 80
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=29.14 E-value=19 Score=41.94 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=11.0
Q ss_pred CCceEEecCCCC
Q psy16872 24 SNVRVRFAPSPT 35 (605)
Q Consensus 24 ~~~~~~~~~~~~ 35 (605)
+.|++|||||||
T Consensus 65 ~~v~tRFaPSPt 76 (851)
T 2hz7_A 65 PRVVTRFPPDPS 76 (851)
T ss_dssp SSCEEEECCCSS
T ss_pred CceEEEeCCCCC
Confidence 379999999998
Done!