RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16872
(605 letters)
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 470 bits (1213), Expect = e-161
Identities = 190/571 (33%), Positives = 276/571 (48%), Gaps = 100/571 (17%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VR RFAPSPT G LH
Sbjct: 3 MKVRTRFAPSPT--------------------------------------------GYLH 18
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+GG RTAL+N+LFA+ H G FILRIEDTDQ R EA E + + LKW+G+ DE G
Sbjct: 19 IGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGG- 77
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
YGPY QS+RL +Y++ + LL G AY C+C+ L +R++ +G P+YD +CR+L
Sbjct: 78 PYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDL 137
Query: 204 TQEQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPT 260
T+E++ +L IRFK+ + DLV G+I F N D VI++SDG PT
Sbjct: 138 TKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIE---FPNSELDDFVILRSDGTPT 194
Query: 261 YHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK 320
Y+FA VVDDH M I+HV+RG + +T K IL+Y+A GW P FAHLPL+L +G KLSK
Sbjct: 195 YNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDGKKLSK 254
Query: 321 RQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
R G SVE R+ +LP AL+N++ G H Q ++FS+++L+E
Sbjct: 255 RHGATSVEQYRDMGYLPEALLNYLALLGWS-HGDQ-----EIFSLEELIEL--------- 299
Query: 381 IKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL 440
FDL+ V+++ + D+ L+ N IR + EE+ L
Sbjct: 300 -------------------FDLERVSKSPARFDIKKLDWLNGHYIRE-LDP---EELAEL 336
Query: 441 VEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
+ D YL V+ ER L++L F +
Sbjct: 337 LLPWHLEQEGLDTE-----DGPYLEKVVPLLKERAKTLKELAEL-ARFFFEDFPEYDEDA 390
Query: 501 HPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
K + + +LE L+ +L+ + +T +++ ++ + E G++ LR
Sbjct: 391 AK-----KHLKEVAREVLEALLEKLEALEEWTAEAIEAAIKAVAEELGLKGGKLFMPLRV 445
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+L+G GP + E ME+L KE + RLR L
Sbjct: 446 ALTGRTVGPPLFESMELLGKEEVLARLRKAL 476
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 362 bits (930), Expect = e-119
Identities = 179/567 (31%), Positives = 269/567 (47%), Gaps = 110/567 (19%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
VR RFAPSPT G LH+G
Sbjct: 2 VRTRFAPSPT--------------------------------------------GYLHIG 17
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
G RTAL+NYLFAK G F+LRIEDTD R + EA E + + LKW+G+ DE
Sbjct: 18 GARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGLKWLGISWDE-------- 69
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205
GPY QS+RL +Y+K + LL G AY+C+CS RL +R++ + P+YD CRNL
Sbjct: 70 GPYYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDRHCRNLHN 129
Query: 206 EQIDEKLKENSKYCIRFKLTNHTE-SWQDLVYGDISYNVFHNE-GDPVIIKSDGFPTYHF 263
E+I+ L + +RFK+ S+ D V G+I++ ++E D VI+KSDG PTY+F
Sbjct: 130 EEIENALAKGIPPVVRFKIPQEGVVSFNDQVRGEITFQ--NSELDDFVILKSDGSPTYNF 187
Query: 264 ANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323
A VVDD+ M I+HV+RG + +T K ILIYKA GW P FAHLP++L +G KLSKR G
Sbjct: 188 AVVVDDYLMKITHVIRGEDHISNTPKQILIYKALGWKIPVFAHLPMILGEDGKKLSKRDG 247
Query: 324 DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKP 383
S+ + +LP ALIN++ G D Q + FS+++L+E
Sbjct: 248 ATSIMQFKEQGYLPEALINYLALLGWSPPDDQ-----EFFSLEELIE------------- 289
Query: 384 TIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL-VE 442
F L V+++ K D L N I+ L E
Sbjct: 290 ---------------IFSLNRVSKSPAKFDWKKLQWLN------------AHYIKELPDE 322
Query: 443 KLKQHIVNEFPNSSLQ--IDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
+L + + ++++ L +L ER+ L+++ F K ++ +
Sbjct: 323 ELFELLDPHLQKKVKTSTLNEEQLKELLLLFKERLKTLKEIAELIRLFFEDKKEVDEDAF 382
Query: 501 HPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
K + +LE L +LQ + +T + + + +++ + E G++ LR
Sbjct: 383 K------KHLKKNVKEVLEALKKKLQALEEWTAEEVKSAIKQIAEELGLKGGKVFMPLRL 436
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRL 587
+L+G GP + + + ++ K I RL
Sbjct: 437 ALTGKGHGPDLAQSLVLIGKTEVIERL 463
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 355 bits (912), Expect = e-116
Identities = 174/575 (30%), Positives = 258/575 (44%), Gaps = 115/575 (20%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VR RFAPSPT G LH
Sbjct: 8 VGVRTRFAPSPT--------------------------------------------GYLH 23
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+G RTAL NYL+A+ + G FILRIEDTD R PEA + + +DL+W+G+ DE
Sbjct: 24 IGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDE------ 77
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVP-KYDNKCRN 202
GPY QS+R +Y + + L+ G AY C+C+ L +R+ G P YD RN
Sbjct: 78 --GPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERN 135
Query: 203 LTQEQIDEKLKENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPT 260
LT + L E +R K + + ++DLV G I + H D VI++ DG+PT
Sbjct: 136 LTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKH--PDFVILRYDGYPT 193
Query: 261 YHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK 320
Y+FA VVDDH M I+HVLRG + +T + I +Y+A GW PP +AHLPLLLN +G KLSK
Sbjct: 194 YNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDGKKLSK 253
Query: 321 RQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
R+G +S+ R +LP AL N + G G+ ++FS+++ ++
Sbjct: 254 RKGAVSIGEYRVEGWLPPALPNLLALLGRGY----PPEAIEIFSLEEGIKW--------- 300
Query: 381 IKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL 440
FDL +V+++ D L+ N R M E +
Sbjct: 301 -------------------FDLTIVSKSPAAFDRKKLDWLN----PRYMRVDPVEV---V 334
Query: 441 VEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
+E LK H+ E ++L ++ + V+ E L ++ DF F K
Sbjct: 335 IENLKPHLEEE--GATLPLNPEMGERVVPLTKET---LIEIERLDFFFFEDK-------- 381
Query: 501 HPVESYGKVMLN--LTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558
E L + +LE L T +T++++ ++ + GV+ L
Sbjct: 382 ---EEVRLKRLANVIVAEVLEKDAEGLIT-SDWTKENIIHWVKAVARLFGVKGPKLFPPL 437
Query: 559 RTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
R +L+G P + + +E+L KE RL L
Sbjct: 438 RVALTGGYVEPELADTIELLGKEVQFERLGYALAD 472
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 301 bits (774), Expect = 3e-98
Identities = 128/361 (35%), Positives = 175/361 (48%), Gaps = 63/361 (17%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
VR RFAPSPT G LH+G
Sbjct: 2 VRTRFAPSPT--------------------------------------------GYLHIG 17
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
RTAL+NYLFAK++NG FILR +DTD R PE E + +DLKW+G+ DE
Sbjct: 18 HARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDLKWLGIKWDE-------- 69
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLV--PKYDNKCRNL 203
PY QS R +Y K + L+ G AY CFC+ L R++ G P+YD +C L
Sbjct: 70 KPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERPRYDEECLRL 129
Query: 204 TQEQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH 262
+E++ + E K +RFK+ +DLV G I + D +K DG+PTY
Sbjct: 130 FEEEMRKGEAEGGKATLRFKIPMESPYVMRDLVRGRIKFEP-SALHDRTGLKWDGYPTYD 188
Query: 263 FANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQ 322
FA V+DD M I+HVLRG E +T K I IY+A GW P F H L LNL+G+KLSKR+
Sbjct: 189 FAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNLDGTKLSKRK 248
Query: 323 GDMSV--EAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
+SV ++ P AL+NF+ G+ + F+ ++L++ N
Sbjct: 249 LSLSVFISQVKGWGDPPEALLNFLRRR--GWTPE---GIREFFTREELIKSFDLNRVSKS 303
Query: 381 I 381
+
Sbjct: 304 L 304
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 275 bits (705), Expect = 3e-85
Identities = 130/349 (37%), Positives = 192/349 (55%), Gaps = 51/349 (14%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VRVRFAPSPT G LH
Sbjct: 44 GPVRVRFAPSPT--------------------------------------------GNLH 59
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+GG RTAL+NYLFA+S G F+LRIEDTD R E+ E + +DLKW+G+ DE VGG
Sbjct: 60 VGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGG 119
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
YGPY QS+R A+Y++ + LL +G Y CFC+D L ++++A L P+Y K
Sbjct: 120 EYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATA 179
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTE-SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH 262
+ E++ +L + + Y RF++ DL+ G++S+N GD V+++S+G P Y+
Sbjct: 180 SDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNT-DTLGDFVLLRSNGQPVYN 238
Query: 263 FANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQ 322
F VDD M I+HV+R E +T + LIYKA G+ P+FAH+ L+L + SKLSKR
Sbjct: 239 FCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRH 298
Query: 323 GDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371
G SV R +LP+A++N++ G +++++F++++LVEK
Sbjct: 299 GATSVGQFREMGYLPDAMVNYLALLGWN-----DGTENEIFTLEELVEK 342
Score = 28.9 bits (65), Expect = 9.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 552 STFMKLLRTSLSGLKQGPSVGEMMEILTKENT 583
FM L R +L+G GP VGE + +L K T
Sbjct: 488 RLFMPL-RVALTGKMHGPDVGESLVLLHKAGT 518
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 240 bits (615), Expect = 6e-73
Identities = 121/394 (30%), Positives = 172/394 (43%), Gaps = 83/394 (21%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
V RFAPSPT G LH+G
Sbjct: 3 VITRFAPSPT--------------------------------------------GYLHVG 18
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
RTAL N+L+A+ H G FILRI+DTD R E + + +DLKW+G+ D +
Sbjct: 19 NARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTF------ 72
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205
QS R Y + + L G Y C+ + L L RK + GL P YD LT+
Sbjct: 73 ---RQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTE 129
Query: 206 EQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFAN 265
E+ E K RFKL + SW DL+ G+ S + + DPV+I++DG Y +
Sbjct: 130 EEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDA-ASLSDPVLIRADGSYLYTLPS 188
Query: 266 VVDDHHMNISHVLRGVEWQISTTK-HILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD 324
VVDD M I+H++RG E ++ T I I++A G PP FAHL LL +G LSKR G
Sbjct: 189 VVDDIDMGITHIIRG-EDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADGKGLSKRLGG 247
Query: 325 MSVEAIRNSEFLPNALINFVTNFG---------------GGFHDHQRTSKSQL-FSMKDL 368
+S+ ++R P A+ + + G F D S++ F +DL
Sbjct: 248 LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESF-DLSSFSRAPAKFDPEDL 306
Query: 369 VE---KVCNNATYNRIKPTIKEFGI-------FW 392
++ + + +K + GI FW
Sbjct: 307 ERLNARLLHALPFEAVKDRLAALGIPGEAAEAFW 340
Score = 31.4 bits (72), Expect = 1.4
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 554 FMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLR 588
FM L R +L+G + GP + +++ ++ +E I RL
Sbjct: 412 FMPL-RLALTGREHGPELAKLLPLIGRERAIARLT 445
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 219 bits (560), Expect = 9e-67
Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 17/246 (6%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH G L AL ++L A++H G ++LRIED D R VP A + + DL+W+G+ D
Sbjct: 15 SGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGP 74
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
QS+R Y+ + L G Y CFCS + G + Y
Sbjct: 75 --------VLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGI--YPG 124
Query: 199 KCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGF 258
CR+L + R ++ + ++ D + G ++ GD V+ ++DG
Sbjct: 125 TCRDLLHGPRN-------PPAWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADGL 177
Query: 259 PTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318
Y A VVDD ++HV+RG + ST + I + + G P++ HLPL+LN +G KL
Sbjct: 178 FAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADGQKL 237
Query: 319 SKRQGD 324
SK+ G
Sbjct: 238 SKQNGA 243
>gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
This protein resembles a shortened glutamyl-tRNA
ligase, but its purpose is to modify tRNA(Asp) at a
queuosine position in the anticodon rather than to
charge a tRNA with its cognate amino acid [Protein
synthesis, tRNA and rRNA base modification].
Length = 271
Score = 210 bits (538), Expect = 7e-64
Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 20/245 (8%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH G L AL +YL A++H G +++RIED D R VP A + + + L+ G+ D
Sbjct: 10 SGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE 69
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
QS+R ALYQ + LL G AY C C+ + A G + Y
Sbjct: 70 --------VVYQSQRHALYQAALDRLLAAGLAYPCQCTRKEI----AAAHDGGGI--YPG 115
Query: 199 KCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGF 258
CRN + R ++ + ++ D + G ++ GD V+ ++DG
Sbjct: 116 TCRNGLPGRPGR------PAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGL 169
Query: 259 PTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318
Y A VVDD I+HV+RG + ST + I + + G PP++ HLPL++N +G KL
Sbjct: 170 FAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADGEKL 229
Query: 319 SKRQG 323
SK+ G
Sbjct: 230 SKQNG 234
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 200 bits (509), Expect = 4e-57
Identities = 152/547 (27%), Positives = 257/547 (46%), Gaps = 82/547 (14%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LH+G RTAL+NYLFA+ HNG F+LRIEDTD+ R EAVE + LKW+G+
Sbjct: 12 SPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGL--- 68
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
N QSKR LY++ LL NG AY CF + R+ A+++ +
Sbjct: 69 -----DWNGEVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIF 123
Query: 197 DNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE-SWQDLVYGDISYNVFHNEGDPVIIKS 255
+++ R+ +K IR K + D + G++ H + D V++++
Sbjct: 124 NSEWRDKDPSIYPTDIKP----VIRLKTPREGSITIHDTLQGEVVIENSHID-DMVLLRA 178
Query: 256 DGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG 315
DG TY A VVDDH M I+H++RG + + + + IY+AFG+ P H+PL+ +G
Sbjct: 179 DGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG 238
Query: 316 SKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNN 375
+KLSKR G + +EA ++ +LP +L N++ G D + S +Q
Sbjct: 239 AKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQ-------------- 284
Query: 376 ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRV----MST 431
I W F+L + ++ K+D +N N +R + +++
Sbjct: 285 -------------AIDW-------FNLDSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLTS 324
Query: 432 GTQEEIRSLVEKLKQHIV--NEFPNSS-------LQIDDDY---LNYVLCWASE--RIFK 477
T E + KL + + EF ++ + I +D L Y L A E + FK
Sbjct: 325 KTVEILEQNYNKLLRKLAYREEFGGNTERSTAAYIDIREDASTGLTYKLPLAVELPKKFK 384
Query: 478 LQD-------------LVGKDFAFIWVKPSIEHLSQHPV---ESYGKVMLNLTLGILEHL 521
+ + LV + + + +L P+ + +++ N +++ +
Sbjct: 385 VSEQEIGYIKQAMPSLLVRSETLLELTRLAQIYLVDSPIIYSQDSKEIIENCDKNLIKQI 444
Query: 522 IPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKE 581
I L + F ++S+ +E + ++ + MK +R ++G+ PSV E+ EIL KE
Sbjct: 445 IENLSELEQFDKESVQNKFKEIAAANDLKLNDIMKPVRALITGMTASPSVFEIAEILGKE 504
Query: 582 NTIRRLR 588
N ++RL+
Sbjct: 505 NILKRLK 511
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating
glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA
synthetase (GluRS) catalytic core domain . The
discriminating form of GluRS is only found in bacteria
and cellular organelles. GluRS is a monomer that
attaches Glu to the appropriate tRNA. Like other class
I tRNA synthetases, GluRS aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 239
Score = 187 bits (476), Expect = 2e-55
Identities = 71/174 (40%), Positives = 94/174 (54%), Gaps = 33/174 (18%)
Query: 254 KSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNL 313
K DGFPTYH ANVVDDH M I+HV+RG E ST K IL+Y+A GW PPKFAHLPL+LN
Sbjct: 99 KGDGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNP 158
Query: 314 NGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVC 373
+G KLSKR+GD S+ R +LP AL+N++ G D + F++++L+E
Sbjct: 159 DGKKLSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDGEE-----FFTLEELIEL-- 211
Query: 374 NNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRR 427
FDL+ V+++ D L+ N IR
Sbjct: 212 --------------------------FDLERVSKSPAIFDPEKLDWLNGQYIRE 239
Score = 162 bits (412), Expect = 4e-46
Identities = 63/147 (42%), Positives = 75/147 (51%), Gaps = 44/147 (29%)
Query: 25 NVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHL 84
VR RFAPSPT G LH+
Sbjct: 1 KVRTRFAPSPT--------------------------------------------GFLHI 16
Query: 85 GGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGN 144
GG RTAL+NYLFA+ H G FILRIEDTDQ R VPEA E + + LKW+G+ DE VGG
Sbjct: 17 GGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGP 76
Query: 145 YGPYLQSKRLALYQKEVQTLLHNGSAY 171
YGPY QS+RL +Y+K + LL G +
Sbjct: 77 YGPYRQSERLEIYRKYAEKLLEKGDGF 103
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 179 bits (457), Expect = 2e-50
Identities = 107/351 (30%), Positives = 177/351 (50%), Gaps = 51/351 (14%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
TG +H+G LR A++NY+ AK N F++RIEDTD+ R + +++ + L G+ D+
Sbjct: 9 TGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKL 68
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
QS+ L +++ + LL A+ CFCS+ L ++ A +YD
Sbjct: 69 ---------VYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDG 119
Query: 199 KCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDP-VIIKSDG 257
C NL DE L N + +R K NHT S+ D + G++S+ +E D VI+++D
Sbjct: 120 TCENLED---DEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEP--DEIDSFVILRADK 174
Query: 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGS 316
PTY+FA VDD +IS ++RG + +T K ILI +A G+ +AHLP++LN G
Sbjct: 175 TPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEGK 234
Query: 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNA 376
K+SKR SV+ + FLP+A+ N++ G + ++F++++ +E
Sbjct: 235 KMSKRDNASSVKWLLEQGFLPSAIANYLILLGN-------KTPKEIFTLEEAIE------ 281
Query: 377 TYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRR 427
W FD++ ++++ K DL L NR ++
Sbjct: 282 ---------------W-------FDIEKISKSPAKFDLKKLRFINREHLKM 310
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 139 bits (354), Expect = 3e-35
Identities = 93/320 (29%), Positives = 131/320 (40%), Gaps = 97/320 (30%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTD--QTRFVPEAVEKLEQDLKWIGVVPDE 137
G LHLG R A+ N +AK + G FILR EDTD R PEA + + +DLKW+GV DE
Sbjct: 112 GPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE 171
Query: 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSD---SRLNLIRKDAVKSGLVP 194
+QS RL +Y + + L+ G AY C C L +DA K
Sbjct: 172 V---------VIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKEL----RDAGKP---- 214
Query: 195 KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVI-I 253
R+ + E N E W+ ++ G+ EG+ V+ +
Sbjct: 215 ---CPHRDKSPE------------------ENL-ELWEKMLDGEYK------EGEAVVRV 246
Query: 254 KSD------------------------G-----FPTYHFANVVDDHHMNISHVLRGVEWQ 284
K+D G +PTY+FA VDDH + ++HVLRG +
Sbjct: 247 KTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHI 306
Query: 285 ISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK-------RQGDMS---------VE 328
+T K IY FGW P+ H L + G LS +G+ S +
Sbjct: 307 DNTEKQRYIYDYFGWEYPETIHYG-RLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLR 365
Query: 329 AIRNSEFLPNALINFVTNFG 348
A+R LP A+ + G
Sbjct: 366 ALRRRGILPEAIRELIIEVG 385
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 131 bits (332), Expect = 1e-32
Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 46/300 (15%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH+G R A+ N+ +AK ++G I+R +DTD R PEA + + +DL+W+GV DE
Sbjct: 103 SGPLHIGHARAAILNHEYAKKYDGKLIIRFDDTDPRRVDPEAYDMILEDLEWLGVKWDEV 162
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
QS R+ Y + L+ G AY C C +R
Sbjct: 163 ---------VYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNRGEAC-------- 205
Query: 199 KCRNLTQE---QIDEKLK----ENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNEGD 249
CR+ + E + E++ E +R K L + + +D V I GD
Sbjct: 206 HCRDRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGD 265
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
+ +PT F+ +DDH + ++HVLRG + + K IY+ FGW PP+F H
Sbjct: 266 KYRV----YPTMDFSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEPPEFIHWGR 321
Query: 310 L-LNLNGSKLSKR------QGDMS---------VEAIRNSEFLPNALINFVTNFGGGFHD 353
L ++ + + +G+ S + AIR P A+ F+ + G +D
Sbjct: 322 LKIDDVRALSTSSARKGILRGEYSGWDDPRLPTLRAIRRRGIRPEAIRKFMLSIGVKIND 381
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 122 bits (308), Expect = 1e-31
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 33/175 (18%)
Query: 252 IIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLL 311
+IK G+P Y+F + VDD M I+HVLRG + +T +Y+A GW PP+F H P LL
Sbjct: 88 LIKKGGYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLL 147
Query: 312 NLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371
+G+KLSKR+ + ++ A+R +LP AL N++ G +S D E
Sbjct: 148 LEDGTKLSKRKLNTTLRALRRRGYLPEALRNYLALIG--------------WSKPDGHE- 192
Query: 372 VCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIR 426
+F + F ++ VN D L NR IR
Sbjct: 193 ------------------LFTLEEMIAAFSVERVNSADATFDWAKLEWLNREYIR 229
Score = 97.5 bits (243), Expect = 5e-23
Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
TG LH+G RTAL+N+ FA+ + G FILRIEDTD R PE VE + +DLKW+G+ DE
Sbjct: 11 TGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE- 69
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNG 168
GPY QS R LY+ + L+ G
Sbjct: 70 -------GPYRQSDRFDLYRAYAEELIKKG 92
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 83.9 bits (208), Expect = 3e-18
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVP--EAVEKLEQDLKWIGVVPDE 137
G LHLG R A+ N +AK + G FILR +DTD P EA + + +DL+W+GV DE
Sbjct: 12 GPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE 71
Query: 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAY 171
+ S R+ LY + + L+ G AY
Sbjct: 72 V---------VIASDRIELYYEYARKLIEMGGAY 96
Score = 72.8 bits (179), Expect = 2e-14
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Query: 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSK 317
+PT +FA VDDH + ++HVLRG + +T K IY+ FGW P+ H L + G K
Sbjct: 108 WPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWG-RLKIEGGK 166
Query: 318 LSK---RQGDMS-------------VEAIRNSEFLPNALINFVTNFG 348
LS R+G S + A+R P A+ +F+ G
Sbjct: 167 LSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVG 213
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 74.6 bits (183), Expect = 5e-14
Identities = 66/302 (21%), Positives = 120/302 (39%), Gaps = 57/302 (18%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G ++ N+ +AK +NG+ LR +DT+ + PE VE +++D++W+G +
Sbjct: 11 GYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKI 70
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199
+Y + + R A L+ G AY + + R P ++
Sbjct: 71 RYSSDY--FDELYRYAE------ELIKKGLAYVDELTPEEIREYRGTLTD----PGKNSP 118
Query: 200 CRNLTQEQ---IDEKLK----ENSKYCIRFKLTNHTESWQ--DLVYGDISYNVFHNEGDP 250
R+ + E+ + EK++ + K +R K+ + D V I + H G
Sbjct: 119 YRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTK 178
Query: 251 VIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLL 310
I +P Y F + + D NI+H L +E+Q + + + W H+
Sbjct: 179 WCI----YPMYDFTHCISDAMENITHSLCTLEFQDNR-------RLYDWVLDNI-HIFPR 226
Query: 311 --------LNLNGSKLSKRQGDM----------------SVEAIRNSEFLPNALINFVTN 346
LNL G+ LSKR+ ++ +R + P ++ F
Sbjct: 227 PAQYEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNR 286
Query: 347 FG 348
G
Sbjct: 287 IG 288
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 60.9 bits (148), Expect = 1e-09
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 30/214 (14%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH+G + AL N FA+ + G I+R +DT+ ++ E VE + +D++ +G+ D
Sbjct: 223 SGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAV 282
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
T +Y P L + + +K L+ G AY D+ +RK+ + ++
Sbjct: 283 -TYTSDYFPQL----MEMAEK----LIKEGKAY---VDDTPREQMRKERMD-----GIES 325
Query: 199 KCRNLTQEQ---IDEKLKENSKY----CIRFKL--TNHTESWQDLVYGDISYNVFHNEGD 249
KCRN + E+ + +++ S+ C+R KL + +S +D VY + H G
Sbjct: 326 KCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGS 385
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEW 283
K +PTY FA D ++H LR E+
Sbjct: 386 ----KYKVYPTYDFACPFVDALEGVTHALRSSEY 415
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 58.9 bits (142), Expect = 5e-09
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 31/253 (12%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH+G + AL N +A+ + G ILR +DT+ ++ E E + +DL I + PD S
Sbjct: 21 SGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPD-S 79
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
+ +Y + + Y L+ G AY ++ ++ +K + ++
Sbjct: 80 VSFTSDY-----FEPIRCYAI---ILIEEGLAY--------MDDTPQEEMKKERADRAES 123
Query: 199 KCRNLTQEQIDEKLKENSK-------YCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGD 249
K RN + E+ E KE +C+R K+ ++ + +D V + H G
Sbjct: 124 KHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSG- 182
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
+PTY A + D ++H LR E+ + I KA G P+ H
Sbjct: 183 ---TAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRI-HAFA 238
Query: 310 LLNLNGSKLSKRQ 322
+N + LSKR+
Sbjct: 239 RMNFMNTVLSKRK 251
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 55.0 bits (132), Expect = 8e-08
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 30/254 (11%)
Query: 78 STGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDE 137
++G LH+G + AL N + A + G + R +DT+ ++ + + DL +GV D
Sbjct: 61 ASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWD- 119
Query: 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYD 197
GP S + L ++ + L+ G AY + R D V +
Sbjct: 120 -------VGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPT------- 165
Query: 198 NKCRNLTQE-------QIDEKLKENSKYCIRFKLT--NHTESWQDLVYGDISYNVFHNEG 248
K R+++ E ++ + E + C+R K++ N ++ +D V ++ +G
Sbjct: 166 -KYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQG 224
Query: 249 DPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLP 308
K +PTY F + D ++H LR E+ ++ A G P
Sbjct: 225 ----TKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFS 280
Query: 309 LLLNLNGSKLSKRQ 322
LN+ S +SKR+
Sbjct: 281 -RLNMEYSVMSKRK 293
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 49.6 bits (119), Expect = 1e-06
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
G LH+G + L N+ +AK + G LR +DT+ + E V+ +++D+KW+G+ P
Sbjct: 12 GYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPY 68
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 43.2 bits (102), Expect = 3e-04
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G ++ L N+ A+ + G LR++DT+ E VE ++ D++W+G E
Sbjct: 42 GYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEHL 101
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAY 171
+Y +Y Q L+ G AY
Sbjct: 102 YYASDYFE-------RMYAYAEQ-LIKMGLAY 125
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 39.6 bits (92), Expect = 0.005
Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 49/261 (18%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQD-----LKWIGVV 134
G LH+G ++ N+ A++H G LR +DT+ PE E++ D +KW+G
Sbjct: 62 GFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTN-----PETEEQVYIDAIMEMVKWMGWK 116
Query: 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVP 194
PD T +Y + Q L++ VQ L+ +G AY ++ D +K
Sbjct: 117 PDWV-TFSSDY--FDQ-----LHEFAVQ-LIKDGKAY--------VDHSTPDELKQQREQ 159
Query: 195 KYDNKCRNLTQEQ---IDEKLKENSKYC-------IRFKLTNHTESWQDLVYGDISYNVF 244
+ D+ RN + E+ + E +++ +Y ++ + + + +D I+Y V
Sbjct: 160 REDSPWRNRSVEENLLLFEHMRQ-GRYAEGEATLRVKADMKSDNPNMRDF----IAYRVK 214
Query: 245 HNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG-WTPP- 302
+ E K +P+Y F + + D +I + L +E++ + + + W P
Sbjct: 215 YVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHV 274
Query: 303 -KFAHLPLLLNLNGSKLSKRQ 322
+F+ LN+ GS LSKR+
Sbjct: 275 WEFSR----LNVTGSLLSKRK 291
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 38.4 bits (90), Expect = 0.010
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 34/104 (32%)
Query: 244 FHNEGDP---VIIKSDGFPTY--------------HFA---NVVD-DHHMNISHVLRGVE 282
F GD V+ KSDG Y F V+ D H + +
Sbjct: 298 FKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQHGHFKQL----- 352
Query: 283 WQISTTKHILIYKAFGWTPPKFAHLP--LLLNLNGSKLSKRQGD 324
K +L +G H L+ G K+S R G+
Sbjct: 353 ------KAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN 390
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 38.2 bits (89), Expect = 0.014
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 46/223 (20%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEA-----VEKLEQDLKWIGVV 134
G LH+G + ++ AK G LR +DT+ PEA ++ +E+ ++W+G
Sbjct: 275 GYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTN-----PEAEKKEYIDHIEEIVEWMGWE 329
Query: 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVP 194
P + Y Q LY+ V+ L+ G AY + + +K
Sbjct: 330 PFKITYTSD----YFQ----ELYELAVE-LIRRGHAYVDHQT--------PEEIKEYREK 372
Query: 195 KYDNKCRNLTQEQIDEKLK----------ENSKYCIRFK--LTNHTESWQDLVYGDISYN 242
K ++ R+ I+E LK E K +R K + N + DL+ I +
Sbjct: 373 KMNSPWRD---RPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFT 429
Query: 243 VFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQI 285
+ GD I +P+Y +A+ + D NI+H L +E++
Sbjct: 430 PHPHAGDKWCI----YPSYDYAHCIVDSLENITHSLCTLEFET 468
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 35.1 bits (82), Expect = 0.12
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 37/105 (35%)
Query: 244 FHNEGDPVIIKSDGFPTYHFA-----------------NVVD-DHHMNISHVLRGVEWQI 285
F ++ D V+IKSDG TY F VV DHH + +
Sbjct: 240 FGDDKDRVLIKSDGTYTY-FTRDIAYHLYKFERFDRVIYVVGADHHGHFKRL-------- 290
Query: 286 STTKHILIYKAFGWTPPKFAHL-----PLLLNLNGSKLSKRQGDM 325
K L KA G+ P L L+ G K+S R G++
Sbjct: 291 ---KAAL--KALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNV 330
>gnl|CDD|100273 CHL00173, cpeA, phycoerythrin alpha subunit; Provisional.
Length = 164
Score = 33.2 bits (75), Expect = 0.18
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 531 FTRDSLATPLREFSTEQGVEYSTFMKLLRTSLS 563
F RD L P R+ S + GVEY+ + + SL
Sbjct: 133 FARDRLCVP-RDMSAQAGVEYAGNLDYIINSLC 164
>gnl|CDD|220387 pfam09763, Sec3, Exocyst complex component Sec3. This entry is the
conserved middle and C-terminus of the Sec3 protein.
Sec3 binds to the C-terminal cytoplasmic domain of GLYT1
(glycine transporter protein 1). Sec3 is the exocyst
component that is closest to the plasma membrane docking
site and it serves as a spatial landmark in the plasma
membrane for incoming secretory vesicles. Sec3 is
recruited to the sites of polarised membrane growth
through its interaction with Rho1p, a small GTP-binding
protein.
Length = 691
Score = 34.2 bits (79), Expect = 0.20
Identities = 14/74 (18%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 420 FNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWAS-ERIF-- 476
+++ +++V+ + T +EIR +E L + + F + ++++ L V W+ + F
Sbjct: 619 YSKQALKKVLKSYTAKEIRKGIEALYKRVEKHFGGDADCLEEELLQKV--WSDMQGEFIS 676
Query: 477 ---KLQDLVGKDFA 487
+L++++ K +
Sbjct: 677 QYLRLEEIIIKCYP 690
>gnl|CDD|227622 COG5306, COG5306, Uncharacterized conserved protein [Function
unknown].
Length = 621
Score = 32.2 bits (73), Expect = 0.89
Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 29/121 (23%)
Query: 236 YGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYK 295
GDI YN I S+G TY F ++ D M R H LI
Sbjct: 120 CGDIVYN----------ISSNGSYTYSFVDITLDSAMTS---GRY---------HRLIAG 157
Query: 296 AFGWTPPKFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQ 355
P F P++L NG+ S R G+ + NSEF+ F + Q
Sbjct: 158 ------PLFGQRPIILG-NGAGESIRYGETHIYFTINSEFIKWGYRVFTNIDEFPPYTWQ 210
Query: 356 R 356
Sbjct: 211 G 211
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 32.0 bits (74), Expect = 0.91
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G ++ N+ A+ + G LR +DT+ + E V+ +++D++W+G
Sbjct: 40 GYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFDWSGEL 99
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCS 176
+Y + Q LY+ V+ L+ G AY S
Sbjct: 100 RYASDY--FDQ-----LYEYAVE-LIKKGKAYVDDLS 128
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 31.0 bits (71), Expect = 1.4
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 36/102 (35%)
Query: 244 FHNEGDPVIIKSDGFPTYHFA------------------NVVD-DHHMNI---SHVLRGV 281
F ++ D V+++SDG TY F VV DHH + L +
Sbjct: 125 FGDDKDRVLVRSDGTYTY-FTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELL 183
Query: 282 EWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323
+ + L+Y +LP K+S R G
Sbjct: 184 GYDEAKKLEHLLY--------GMVNLP-----KEGKMSTRAG 212
>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 842
Score = 31.6 bits (72), Expect = 1.4
Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 49/176 (27%)
Query: 420 FNRAEIRRVM-----STG---TQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWA 471
++R +I + S G + E I SLV ++++ I ++PN +
Sbjct: 13 YDREKIEVAIRKAFASVGKPISDEIIYSLVAEVERFIKEKYPNGHNV------------S 60
Query: 472 SERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGIL------EHLIPRL 525
E I QDLV K +EH V+SY IL E R
Sbjct: 61 VEEI---QDLVEKTL--------MEHGHYAEVKSY----------ILYRAQRTEKRKARE 99
Query: 526 QTCDPFTRDSLATPLREFSTE-QGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTK 580
Q F D++ L+E + EYS L LS K S GE + L K
Sbjct: 100 QIIKFFDDDTVLGVLKEIQKDFPSDEYS-LDLLAEKFLSFCKPNMSEGESLAALIK 154
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 31.5 bits (72), Expect = 1.4
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 514 TLGILEHLIPRLQTCDPFTRD-SLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVG 572
L LE L L++ + + L + E + ++G+ F + L L G ++GP +G
Sbjct: 443 KLEALEDLAEFLESIQKASLEVELHNEVYEVAKKKGILPRAFFQALYRVLIGKERGPRLG 502
Query: 573 EMMEILTKENTIRRLRDVL 591
+ +L + IRR+R L
Sbjct: 503 SFLALLGVDFVIRRIRLAL 521
>gnl|CDD|224242 COG1323, COG1323, Predicted nucleotidyltransferase [General
function prediction only].
Length = 358
Score = 29.6 bits (67), Expect = 4.2
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 424 EIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVG 483
IR+ + +G E I ++V K I++ L + + A + +L +L
Sbjct: 209 AIRKAIFSGDLERIANMVPKETLEILSSKRGRPLSHWGRLFDLIKYNALTNMDELMNLYR 268
>gnl|CDD|222560 pfam14127, DUF4294, Domain of unknown function (DUF4294). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 192 and 226 amino
acids in length.
Length = 157
Score = 28.7 bits (65), Expect = 5.7
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 368 LVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQL 404
L+ + + +Y IK + FW+ T + F + L
Sbjct: 99 LIHRQTGSTSYELIKELRGGWRAFWYNTTASLFGISL 135
>gnl|CDD|217076 pfam02511, Thy1, Thymidylate synthase complementing protein.
Thymidylate synthase complementing protein (Thy1)
complements the thymidine growth requirement of the
organisms in which it is found, but shows no homology to
thymidylate synthase.
Length = 189
Score = 28.7 bits (65), Expect = 5.7
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 408 NSCKVDL---TNLNE-FNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPN 454
N+ + N + E+R Q EIR L E + + + P
Sbjct: 140 NATYTRIYVTGNARSLLHFLELR--SCPHAQWEIRELAEAMLEILKKVAPV 188
>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 29.3 bits (66), Expect = 6.6
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 16/76 (21%)
Query: 39 FYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTG---LLHLGGLRTALYNYL 95
F + Y G I + +N L E LR+ + F TS+ LLH L
Sbjct: 88 FVANYRFGSIGVAHN--GNLVNYEELRAKLEENGSIFNTSSDTEVLLH-----------L 134
Query: 96 FAKSHNGSFILRIEDT 111
A S F RI D
Sbjct: 135 IAISKARPFFSRIVDA 150
>gnl|CDD|133123 cd06592, GH31_glucosidase_KIAA1161, KIAA1161 is an uncharacterized
Homo sapiens protein with a glycosyl hydrolase family 31
(GH31) domain that is homologous to the Escherichia coli
YihQ glucosidase. Orthologs of KIA1161 are found in
eukaryotes and prokaryotes. In bacteria, YihQ (along
with YihO) is important for bacterial O-antigen capsule
assembly and translocation. Enzymes of the GH31 family
possess a wide range of different hydrolytic activities
including alpha-glucosidase (glucoamylase and
sucrase-isomaltase), alpha-xylosidase,
6-alpha-glucosyltransferase,
3-alpha-isomaltosyltransferase and alpha-1,4-glucan
lyase. All GH31 enzymes cleave a terminal carbohydrate
moiety from a substrate that varies considerably in
size, depending on the enzyme, and may be either a
starch or a glycoprotein.
Length = 303
Score = 28.7 bits (65), Expect = 8.1
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 433 TQEEIRSLVEKLKQHIVNEFPNSSLQIDDDY 463
QE + + +++ + FPN ++IDD++
Sbjct: 28 NQETVLNYAQEIIDN---GFPNGQIEIDDNW 55
>gnl|CDD|224632 COG1718, RIO1, Serine/threonine protein kinase involved in cell
cycle control [Signal transduction mechanisms / Cell
division and chromosome partitioning].
Length = 268
Score = 28.8 bits (65), Expect = 8.3
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 233 DLVYGDIS-YNVFHNEGDPVII 253
LV+GD+S YN+ ++G+P II
Sbjct: 187 GLVHGDLSEYNILVHDGEPYII 208
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 28.9 bits (65), Expect = 8.6
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 96 FAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETV 141
F + N +F L D + + A+EKL +D+ + V
Sbjct: 260 FVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQV 305
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type.
Asparate--tRNA ligases in this family may be
discriminating (6.1.1.12) or nondiscriminating
(6.1.1.23). In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_bact, represents
aspartyl-tRNA synthetases from the Bacteria and from
mitochondria. In some species, this enzyme aminoacylates
tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently
transamidated to Asn-tRNA(asn). This model generates
very low scores for the archaeal type of aspS and for
asnS; scores between the trusted and noise cutoffs
represent fragmentary sequences [Protein synthesis, tRNA
aminoacylation].
Length = 583
Score = 28.9 bits (65), Expect = 8.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 429 MSTGTQEEIRSLVEKLKQHIVNEFPNSSLQ 458
MS TQE++ L+EKL H+ E L+
Sbjct: 236 MSFMTQEDVMELIEKLVSHVFLEVKGIDLK 265
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 28.9 bits (65), Expect = 8.7
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 436 EIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYV-LCWASERIFKLQDLVGKDFAFIWVKPS 494
SL K + I ++L D +N V LC S RI KLQ L+ F PS
Sbjct: 302 LCSSLFPKCLEPIEKVLEQANLTKTD--INKVVLCGGSSRIPKLQQLIKDLF------PS 353
Query: 495 IEHLS 499
+E L+
Sbjct: 354 VEVLN 358
>gnl|CDD|236436 PRK09263, PRK09263, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 711
Score = 29.1 bits (66), Expect = 9.2
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 421 NRAEIRRVMSTGTQEEIRSLVEKLKQHIVNE 451
+R R + EEIR L+E+ + ++NE
Sbjct: 87 DRDIAREKATD-LNEEIRGLIEQSNEAVLNE 116
>gnl|CDD|221476 pfam12234, Rav1p_C, RAVE protein 1 C terminal. This domain family
is found in eukaryotes, and is typically between 621 and
644 amino acids in length. This family is the C terminal
region of the protein RAVE (regulator of the ATPase of
vacuolar and endosomal membranes). Rav1p is involved in
regulating the glucose dependent assembly and
disassembly of vacuolar ATPase V1 and V0 subunits.
Length = 629
Score = 28.9 bits (65), Expect = 9.8
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 219 CIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGF 258
+R+ TN T SW + DI + H GD +K
Sbjct: 103 QLRYDYTNKTPSWLPIKEIDIRDHTPHPIGDSTWLKDGNL 142
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 27.8 bits (62), Expect = 9.9
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHN-----GSFILRIEDTDQTRFVPEAVEKLE 125
T G LH+G LRT + A+++ I I+D P A +K E
Sbjct: 7 TPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDP-ANKKGE 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,593,933
Number of extensions: 2990858
Number of successful extensions: 2803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2750
Number of HSP's successfully gapped: 73
Length of query: 605
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 502
Effective length of database: 6,369,140
Effective search space: 3197308280
Effective search space used: 3197308280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)