RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16872
(605 letters)
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 483 bits (1246), Expect = e-167
Identities = 173/569 (30%), Positives = 270/569 (47%), Gaps = 106/569 (18%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
V R APSPT G H+G
Sbjct: 2 VVTRIAPSPT--------------------------------------------GDPHVG 17
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
AL+NY +A+ + G FI+RIEDTD+ R+VP A E++ LKW+G+ DE VGG +
Sbjct: 18 TAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPH 77
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205
GPY QS+RL LYQK + LL G AY+ F + L IRK+ YD + RN+
Sbjct: 78 GPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK------GGYDGRARNIPP 131
Query: 206 EQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTYH 262
E+ +E+ + + IR K+ T +D + G + + N+ D V++KSDG+PTYH
Sbjct: 132 EEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVV---YDNQEIPDVVLLKSDGYPTYH 188
Query: 263 FANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQ 322
ANVVDDH M ++ V+R EW +ST H+L+Y+AFGW P+F H+PLL N + +K+SKR+
Sbjct: 189 LANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKISKRK 248
Query: 323 GDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIK 382
S++ + FLP AL N++ G D + ++F++++ ++
Sbjct: 249 SHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR-----EIFTLEEFIQA----------- 292
Query: 383 PTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVE 442
F + V+ DL L N IR V+S EE + E
Sbjct: 293 -----------------FTWERVSLGGPVFDLEKLRWMNGKYIREVLSL---EE---VAE 329
Query: 443 KLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQHP 502
++K + + + YL + R L++ K +++ + +P
Sbjct: 330 RVKPFLREAGLSWE---SEAYLRRAVELMRPRFDTLKEFPEK-ARYLFTED-------YP 378
Query: 503 VESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSL 562
V + L L +L+ L PRL+ + +T +L LR F+ E+GV+ + LR +L
Sbjct: 379 VSEKAQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAAL 438
Query: 563 SGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+G + P + E++ +L KE +RRL L
Sbjct: 439 TGSLETPGLFEILALLGKERALRRLERAL 467
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 466 bits (1201), Expect = e-160
Identities = 141/578 (24%), Positives = 226/578 (39%), Gaps = 104/578 (17%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VRVRF PSPT G H
Sbjct: 5 ETVRVRFCPSPT--------------------------------------------GTPH 20
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+G +RTAL+N+ +A+ G+F+ RIEDTD R E+ L L+W+G+ DE VGG
Sbjct: 21 VGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGG 80
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
YGPY QS+R +Y+ + LL G AY F + + R A YDN R+L
Sbjct: 81 PYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA-RHVAAGRNPKLGYDNFDRHL 139
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTY 261
T Q L E + +R ++ + +W DLV G ++ F D + ++ G P Y
Sbjct: 140 TDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVT---FAAGSVPDFALTRASGDPLY 196
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPPKFAHLPLLLNLNGS 316
N DD M I+HVLRG + ST + + +++A PKFAHLP +L
Sbjct: 197 TLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTK 256
Query: 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNA 376
KLSKR ++ A R+ F+P L+N++ G D LF + ++V
Sbjct: 257 KLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDH-----DLFGLDEMVAA----- 306
Query: 377 TYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEE 436
FD+ VN + + D + N IR + +
Sbjct: 307 -----------------------FDVADVNSSPARFDQKKADALNAEHIRML----DVGD 339
Query: 437 IRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIE 496
+L+ H+ + +L D+ RI L D F
Sbjct: 340 ---FTVRLRDHLDTHGHHIAL--DEAAFAAAAELVQTRIVVLGDAWEL-LKFFNDDQ--- 390
Query: 497 HLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLRE-FSTEQGVEYSTFM 555
++ K + +L+ + L + +T + L++ ++
Sbjct: 391 --YVIDPKAAAKELGPDGAAVLDAALAALTSVTDWTAPLIEAALKDALIEGLALKPRKAF 448
Query: 556 KLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
+R + +G P + E +E+L ++ +++RLR +
Sbjct: 449 SPIRVAATGTTVSPPLFESLELLGRDRSMQRLRAARQL 486
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 463 bits (1193), Expect = e-159
Identities = 162/573 (28%), Positives = 252/573 (43%), Gaps = 108/573 (18%)
Query: 23 HSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLL 82
H VRVRFAPSPT G L
Sbjct: 11 HHMVRVRFAPSPT--------------------------------------------GFL 26
Query: 83 HLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVG 142
H+GG RTAL+N+LFA+ G FILRIEDTD R E EKL + L+W+G++ DE VG
Sbjct: 27 HVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVG 86
Query: 143 GNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCR- 201
G++GPY QS+R+ +Y++ + L+ G AY + + +R+ + G P Y +
Sbjct: 87 GDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFE 146
Query: 202 -NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGF 258
T E+ E ++ + + FK+ D+V G++ F GD VI++S+G
Sbjct: 147 KFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVV---FKTGAIGDFVIMRSNGL 203
Query: 259 PTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318
PTY+FA VVDD M I+HV+RG + +T + + +Y+AF PP FAH+ +L +G KL
Sbjct: 204 PTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGKKL 263
Query: 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATY 378
SKR G SVEA R+ +LP AL+N++ G + + +L ++++L+
Sbjct: 264 SKRHGATSVEAFRDMGYLPEALVNYLALLGWSHPEGK-----ELLTLEELISS------- 311
Query: 379 NRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIR 438
F L ++ N D L N +R I
Sbjct: 312 ---------------------FSLDRLSPNPAIFDPQKLKWMNGYYLR-------NMPIE 343
Query: 439 SLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHL 498
L E K D++Y VL ER+ L + + F + P+ +
Sbjct: 344 KLAELAKPFFEKAGIKII---DEEYFKKVLEITKERVEVLSEFPEE-SRFFFEDPAPVEI 399
Query: 499 SQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558
+ E + L LQ +T + + ++ + GV+ F L
Sbjct: 400 PEEMKE------------VFSQLKEELQNVR-WTMEEITPVFKKVLKQHGVKPKEFYMTL 446
Query: 559 RTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
R L+G ++GP + ++ +L KE +RR+ L
Sbjct: 447 RRVLTGREEGPELVNIIPLLGKEIFLRRIERSL 479
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 447 bits (1152), Expect = e-152
Identities = 138/571 (24%), Positives = 237/571 (41%), Gaps = 108/571 (18%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VR RFAPSPT G +H
Sbjct: 24 RPVRTRFAPSPT--------------------------------------------GFIH 39
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
LG +R+ALY + FA+ G+F+LRIEDTD R EAV+ + + + W+G+ DE
Sbjct: 40 LGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDE------ 93
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
GPY Q +R+ Y++ + + G Y C+ S L+ +R+ +G P+YD R
Sbjct: 94 --GPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPE 151
Query: 204 TQEQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPT 260
+ + E +RF+ T +W D V G + NE D V+ + DG P
Sbjct: 152 PGKVLPE-PPAGVAPVLRFRNPLTGTVAWDDAVKGRVE---ISNEELDDLVVARPDGTPM 207
Query: 261 YHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK 320
Y+F VVDD M I+HV+RG + +T + I I +A G P +AHLP +LN G K+SK
Sbjct: 208 YNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQGEKMSK 267
Query: 321 RQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
R G MSV R++ +LP A++N++ G D +++F+ + VE
Sbjct: 268 RHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGD------AEIFTREQFVEW--------- 312
Query: 381 IKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL 440
FDL+ + ++ + D LN N I+ + + L
Sbjct: 313 -------------------FDLEHLGKSPAQYDHNKLNWLNNHYIK-------EADDARL 346
Query: 441 VEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
K ++ L V+ +R ++++ A + P+
Sbjct: 347 AGLAKPFFAALGIDAGAIEQGPDLVSVMGLMKDRASTVKEIAEN-SAMFYRAPAPGA--- 402
Query: 501 HPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
++ + + + L L+T + +T++++A L+ ++ +R
Sbjct: 403 ---DALAQHVTDAVRPALVEFAAALKTVE-WTKEAIAAALKAVLGAHKLKMPQLAMPVRL 458
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
++G PS+ ++ + ++ + R+ L
Sbjct: 459 LVAGTTHTPSIDAVLLLFGRDVVVSRIEAAL 489
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 446 bits (1149), Expect = e-152
Identities = 151/573 (26%), Positives = 246/573 (42%), Gaps = 115/573 (20%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VRVRFAPSPT G LH
Sbjct: 24 ELVRVRFAPSPT--------------------------------------------GHLH 39
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+GG RTAL+N++FA+ G FILRIEDTD R E +++ + L+W G+ DE +GG
Sbjct: 40 VGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGG 99
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
++GPY QS+RL +Y++ + L+ + AY + K
Sbjct: 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPS-----------------KELFT 142
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTY 261
T E E ++ I+FK+ S++DL+ G + F N D +I+KS+GFPTY
Sbjct: 143 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME---FDNSTLEDFIIMKSNGFPTY 199
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKR 321
+FA VVDDH M ISHV RG + +T K ++IY+AFGW P F H+PL+L + + LSKR
Sbjct: 200 NFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR 259
Query: 322 QGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI 381
G SVE R L AL+N++ G + ++F++++ ++
Sbjct: 260 HGATSVEHFRREGILSRALMNYLALLGWR-VEGD-----EIFTIEEKLQS---------- 303
Query: 382 KPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLV 441
FD + ++ D L N +R + ++ L
Sbjct: 304 ------------------FDPKDISNKGVIFDYQKLEWVNGKHMR-------RIDLEDLK 338
Query: 442 EKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQH 501
+ + +D+ Y + L E++ L L D + ++ E +
Sbjct: 339 REFIEWAKYAGKEIP-SVDERYFSETLRICREKVNTLSQLY--DIMYPFMNDDYE----Y 391
Query: 502 PVESYGKVMLN-LTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
+ K + +LE + + + + + LR+ S + +L+R
Sbjct: 392 EKDYVEKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRG 451
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
+++G P + E +E+L KE T++RL L++
Sbjct: 452 AVTGKLVTPGLFETIEVLGKERTLKRLERTLQF 484
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 449 bits (1156), Expect = e-152
Identities = 151/573 (26%), Positives = 246/573 (42%), Gaps = 115/573 (20%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VRVRFAPSPT G LH
Sbjct: 128 ELVRVRFAPSPT--------------------------------------------GHLH 143
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+GG RTAL+N++FA+ G FILRIEDTD R E +++ + L+W G+ DE +GG
Sbjct: 144 VGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGG 203
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
++GPY QS+RL +Y++ + L+ + AY + K
Sbjct: 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPS-----------------KELFT 246
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTY 261
T E E ++ I+FK+ S++DL+ G + F N D +I+KS+GFPTY
Sbjct: 247 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME---FDNSTLEDFIIMKSNGFPTY 303
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKR 321
+FA VVDDH M ISHV RG + +T K ++IY+AFGW P F H+PL+L + + LSKR
Sbjct: 304 NFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR 363
Query: 322 QGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI 381
G SVE R L AL+N++ G + ++F++++ ++
Sbjct: 364 HGATSVEHFRREGILSRALMNYLALLGWR-VEGD-----EIFTIEEKLQS---------- 407
Query: 382 KPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLV 441
FD + ++ D L N +R + ++ L
Sbjct: 408 ------------------FDPKDISNKGVIFDYQKLEWVNGKHMR-------RIDLEDLK 442
Query: 442 EKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQH 501
+ + +D+ Y + L E++ L L D + ++ E +
Sbjct: 443 REFIEWAKYAGKEIP-SVDERYFSETLRICREKVNTLSQLY--DIMYPFMNDDYE----Y 495
Query: 502 PVESYGKVMLN-LTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
+ K + +LE + + + + + LR+ S + +L+R
Sbjct: 496 EKDYVEKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRG 555
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
+++G P + E +E+L KE T++RL L++
Sbjct: 556 AVTGKLVTPGLFETIEVLGKERTLKRLERTLQF 588
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 445 bits (1146), Expect = e-151
Identities = 164/578 (28%), Positives = 248/578 (42%), Gaps = 104/578 (17%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
VRVR APSPT G LH+G
Sbjct: 2 VRVRLAPSPT--------------------------------------------GNLHIG 17
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
RTA++N+L+A+ G FILRIEDTD+ R PE E + + L+W+G+ DE
Sbjct: 18 TARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDE-------- 69
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205
GPY QS RL LY++ +QTLL G AY C+C+ L +R + G P+YDN+ R+LT
Sbjct: 70 GPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTP 129
Query: 206 EQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNEGDPVIIKSD-----GFP 259
E+ IRFK+ + WQDLV G +S+ GD VI ++ G+P
Sbjct: 130 EEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYP 189
Query: 260 TYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319
Y+ VVDD M I+ V+RG + +T K IL+Y+A G TPP FAH PL+LN G KLS
Sbjct: 190 LYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTGQKLS 249
Query: 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYN 379
KR G S+ R +L AL N++T G + +LF++ +
Sbjct: 250 KRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVG----ELFTLDLAAKH-------- 297
Query: 380 RIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRS 439
F + +N+ + D LN NR I+ Q E
Sbjct: 298 --------------------FSFERINKAGARFDWDKLNWLNRQYIQ-------QLEPEE 330
Query: 440 LVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLS 499
+ +L + D +L + + L++ + + F + +
Sbjct: 331 FLAELIPLWQGAGYAFDEERDRPWLFDLAQLLQPGLNTLREAIDQGAVFFIPSVTFDS-- 388
Query: 500 QHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLR 559
E+ ++ + IL +L+ L T +++ + GV+ M+ LR
Sbjct: 389 ----EAMAQLGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGVKKGATMRTLR 444
Query: 560 TSLSGLKQGPSVGEMMEILTKEN-TIRRLRDVLEYSRT 596
+L+G GP + +IL + RL L+ ++T
Sbjct: 445 AALTGAVHGPDLMAAWQILHQRGWDEPRLAAALKQAQT 482
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 332 bits (854), Expect = e-110
Identities = 84/317 (26%), Positives = 127/317 (40%), Gaps = 69/317 (21%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
+ RFAPSP+ G LH
Sbjct: 4 TQYIGRFAPSPS--------------------------------------------GELH 19
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
G L AL +YL A++ G +++RIED D R VP A E + + L+ G+ D
Sbjct: 20 FGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDG------ 73
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
QS+R Y++ + L G +Y C C+ +R+ I YD CR L
Sbjct: 74 --DVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIG---------GIYDGHCRVL 122
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHF 263
+ +R + + + D + G I + D +I + DG Y+
Sbjct: 123 HHGPDNAA--------VRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNL 174
Query: 264 ANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323
A VVDDH ++ ++RG + T + I +Y+ FGW P + HLPL LN G+KLSK+
Sbjct: 175 AVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNH 234
Query: 324 DMSVEAIRNSEFLPNAL 340
++ L AL
Sbjct: 235 APALPKGDPRPVLIAAL 251
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 119 bits (300), Expect = 1e-28
Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 51/295 (17%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G R A+ N+ +A+ ++G ILRIEDTD R PEA + + DL+W+GV DE
Sbjct: 107 GPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE-- 164
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199
+QS R+ Y + + L+ G AY C C ++
Sbjct: 165 -------TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEAC--------H 209
Query: 200 CRNLTQE---QIDEKLKE--NSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNEGDPVI 252
CR+L Q ++ E +R K L + + +D V I G
Sbjct: 210 CRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR 269
Query: 253 IKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPK---FAHLPL 309
+ +P +F+ VDDH + ++HVLRG + + K +Y+ GW PP+ +
Sbjct: 270 V----YPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGR--- 322
Query: 310 LLNLNGSKLSKR-------QGDMS---------VEAIRNSEFLPNALINFVTNFG 348
L ++ LS +G+ S + AI P A+ + G
Sbjct: 323 -LKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.3 bits (166), Expect = 4e-12
Identities = 63/394 (15%), Positives = 113/394 (28%), Gaps = 99/394 (25%)
Query: 232 QDLVYGDISYNVFHNEGDPVIIKSDGFPTYH--------FANVVDDHHMNISHVLRGVEW 283
Y DI + E + F + DH + + G
Sbjct: 14 HQYQYKDI---LSVFEDA---FVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 284 QIST--TKHILIYKAF---------GWTPPKFAHLP----LLLNLNGSKLSKRQGD---- 324
T +K + + F + ++ + + + D
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 325 --MSVEAIRNSEFLPNALIN-----FVTNFG-GGFHDHQRTSKSQLFSMKDLVEKVCNNA 376
+V ++ L AL+ V G G K+ + VC +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS------GKTWV------ALDVCLSY 174
Query: 377 TYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNR-----AEIRRVMST 431
F IFW L L N NS + L L + R S+
Sbjct: 175 KVQCKMD----FKIFW---------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 432 GTQEEIRSLVEKLKQHIVNE-FPNSSLQIDDDYLNYVLCWASERI--FKLQ--------D 480
+ I S+ +L++ + ++ + N L + + V ++ F L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLN-----V--QNAKAWNAFNLSCKILLTTRF 274
Query: 481 LVGKDF--AFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCD--PFTRDSL 536
DF A S++H S K +L L +PR + P +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSII 333
Query: 537 ATPLREF-STEQGVEYSTFMKLLRT---SLSGLK 566
A +R+ +T ++ KL SL+ L+
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Score = 66.0 bits (160), Expect = 2e-11
Identities = 90/552 (16%), Positives = 170/552 (30%), Gaps = 160/552 (28%)
Query: 87 LRTALYNYLFAKSHNGS------FILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESET 140
+ T +Y + +N + + R++ + R +A+ +L + K + + +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLEL-RPAKNVLI-----DG 157
Query: 141 VGGNYGPYLQSKR-LA---LYQKEVQTLLHNGSAY----KCFCSDSRL----NLIRKDAV 188
V G G K +A +VQ + + C ++ L L+ +
Sbjct: 158 VLG-SG-----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--- 208
Query: 189 KSGLVPKYDNKCRN-----LTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNV 243
+ P + ++ + L I +L+ K + LV ++
Sbjct: 209 ---IDPNWTSRSDHSSNIKLRIHSIQAELRR------LLKSKPYENCL--LVLLNVQ--- 254
Query: 244 FHNEGDPVIIKSDGFP-------TYHFANVVDDHHMNISHVLRGVEWQISTTKHI-LIYK 295
+ + F T F V D L +TT HI L +
Sbjct: 255 -----NAKAWNA--FNLSCKILLTTRFKQVTD--------FLSA-----ATTTHISLDHH 294
Query: 296 AFGWTPPKFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQ 355
+ TP + + +L L R D+ E + + ++ D
Sbjct: 295 SMTLTPDE------VKSLLLKYLDCRPQDLPREVLTTNPRR-------LSIIAESIRDGL 341
Query: 356 RTSKSQLFSMKDLVEKVCNNATYNRIKPTI-----KEFGIF--------------WF--- 393
T + D + + ++ N ++P +F WF
Sbjct: 342 ATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 394 ----QTFFNEF-DLQLVNENSCK---------VDLTNLNEFNRAEIRRVMSTGTQEEIRS 439
N+ LV + + ++L E N + R S
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALHR-----------S 448
Query: 440 LVEKLKQHIVNEFPNSSLQIDDDY----LNYVLCWA--SERIFKLQDLVGKDFAFIWVKP 493
+V+ + + D Y + + L ER L +V DF F+ K
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQK- 506
Query: 494 SIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREF--STEQGVEY 551
I H + G + LN TL L+ P + DP + L + +F E+ +
Sbjct: 507 -IRH-DSTAWNASGSI-LN-TLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENLIC 561
Query: 552 STFMKLLRTSLS 563
S + LLR +L
Sbjct: 562 SKYTDLLRIALM 573
Score = 50.2 bits (119), Expect = 2e-06
Identities = 52/341 (15%), Positives = 102/341 (29%), Gaps = 121/341 (35%)
Query: 52 YNRCEKLWITEGLRSSI----PLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILR 107
+ C+KL T + SS+ P + + +++ L +
Sbjct: 349 HVNCDKL--TTIIESSLNVLEPAEYRK----------------MFDRLS--------VFP 382
Query: 108 IEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHN 167
+P + L L W V+ + V LH
Sbjct: 383 -PSAH----IPTIL--LS--LIWFDVIKSDVM--------------------VVVNKLHK 413
Query: 168 GSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227
S L+ K K + + ++ K+K ++Y + + +H
Sbjct: 414 YS------------LVEKQP-KESTISIPS-----I---YLELKVKLENEYALHRSIVDH 452
Query: 228 TESWQDLVYGDISYNV---FHNEGDPVIIKSDGFPTYHFANVVDDHHM-NISHVLRGVEW 283
YN+ F ++ D + D + H HH+ NI H R +
Sbjct: 453 -------------YNIPKTFDSD-DLIPPYLDQYFYSHIG-----HHLKNIEHPERMTLF 493
Query: 284 QISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS-----KRQGDMSVEAIRNSEFLPN 338
+ +++ F + K H N +GS L+ K + E L N
Sbjct: 494 R-------MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 339 ALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYN 379
A+++F+ + T ++ M + + A +
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAE------DEAIFE 581
Score = 43.3 bits (101), Expect = 3e-04
Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 84/228 (36%)
Query: 352 HDHQRTSKSQL-FSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSC 410
H H + + KD++ +F F + FD + V +
Sbjct: 4 HHHMDFETGEHQYQYKDILS-------------------VF-EDAFVDNFDCKDVQD--- 40
Query: 411 KVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCW 470
+ ++S EEI HI+ ++ L + L
Sbjct: 41 -------------MPKSILSK---EEI--------DHIIMS-KDAVSGTL--RLFWTLLS 73
Query: 471 ASERIFK--LQDLVGKDFAFIWVKPSIEHLSQHPV----ESYGKVMLNLTLGILEHLIPR 524
E + + +++++ ++ F+ E + + N ++ + R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 525 LQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVG 572
LQ P+ + LR +L L+ +V
Sbjct: 134 LQ---PYLK------------------------LRQALLELRPAKNVL 154
Score = 32.1 bits (72), Expect = 0.64
Identities = 50/329 (15%), Positives = 86/329 (26%), Gaps = 86/329 (26%)
Query: 324 DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI-- 381
+ + + L FV NF D + D+ + + + + I
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNF-----DCKDVQ--------DMPKSILSKEEIDHIIM 56
Query: 382 KPTIKE--FGIFW---------FQTFFNEFDLQ----LVNENSCKVDLTNLNEFNRAEIR 426
+FW Q F E L++ + ++ E R
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 427 RVMSTGTQE------EIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVL---------CWA 471
+ Q KL+Q L N ++ A
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQA---------LLELRPAKNVLIDGVLGSGKTWVA 167
Query: 472 SE--RIFKLQDLVGKDFAFIWVK------PS--IEHLSQ------HPVESYGKVMLNLTL 515
+ +K+Q DF W+ P +E L + S N+ L
Sbjct: 168 LDVCLSYKVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 516 GI--LEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFM-KLLRTS--------LSG 564
I ++ + RL P+ L L + K+L T+ LS
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 565 LKQG-PSVGEMMEILTKENTIRRLRDVLE 592
S+ LT + L L+
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 60.3 bits (145), Expect = 1e-09
Identities = 76/538 (14%), Positives = 152/538 (28%), Gaps = 70/538 (13%)
Query: 76 LTSTGLLHLGGLR-----TALYNYLFAKSHNGSFILRIEDTDQTRFVPEAV-EKLEQDLK 129
+T +G +H+G R + + L K + I +D D+ R VP V ++ + L
Sbjct: 28 ITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLG 87
Query: 130 W-IGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAV 188
I VPD +Y + ++ +++ + A + + IR
Sbjct: 88 MPISEVPDPWGC-HESYAEHFM-RKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFE 145
Query: 189 KSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEG 248
K K + L EN + + + E+ G EG
Sbjct: 146 KR---DKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEG 202
Query: 249 DPV---IIKSDGFPTYHFANVVDDHHMNISHVLRGVE----WQISTTKHILIYKAFGWTP 301
I + + + H + G + T +I + +G
Sbjct: 203 HEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEA 262
Query: 302 PK-FAHLPLLLNLNGSKLSKRQGD----------MSVEAIRNSEFLPNALINFVTNFGGG 350
P + + + K+S +G+ + +R + G G
Sbjct: 263 PLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDLGLG 322
Query: 351 FHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSC 410
+ + + ++ R L ++
Sbjct: 323 ILNLYDEFEKVERIYFGVEGGKGDDEELRRTYELSMPKKPERLVAQAPFRFLAVL----- 377
Query: 411 KVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCW 470
V EE V + HI + ++ +N W
Sbjct: 378 -----------------VQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNW 420
Query: 471 ASERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDP 530
K +A VK SI + P + + + + L+ +
Sbjct: 421 V------------KKYAPEDVKFSIL--EKPPEVEVSEDVREA----MNEVAEWLENHEE 462
Query: 531 FTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLR 588
F+ + L E + +G+ + L G ++GP + + L + I+RLR
Sbjct: 463 FSVEEFNNILFEVAKRRGISSREWFSTLYRLFIGKERGPRLASFLASLDRSFVIKRLR 520
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 55.2 bits (133), Expect = 5e-08
Identities = 66/308 (21%), Positives = 107/308 (34%), Gaps = 69/308 (22%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G HLG + +L ++ A+ + G F LR++DT+ E V+ + DLKW+G+ E
Sbjct: 77 GYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGEHF 136
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199
+Y Y Q L+ G AY S L+ +R +A G +
Sbjct: 137 YYASDYFD-------RYYAYAEQ-LIRQGDAYVESVSPEELSRLRGNATTPG----TPSP 184
Query: 200 CRNLTQEQIDEKLK----------ENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNE 247
R+ + ++E L + ++ +R K LT +D V I
Sbjct: 185 YRDRS---VEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRT 241
Query: 248 GDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW-------- 299
D I +P Y F + + D ++H + +E+ + IY W
Sbjct: 242 SDEWHI----YPAYDFEHPLQDAIEGVTHSMCSLEFVD----NRAIYD---WLMEKLNFD 290
Query: 300 TPPK---FAHLPLLLNLNGSKLSKRQGDMSVE----------------AIRNSEFLPNAL 340
P F L + SKR+ V+ A R P A+
Sbjct: 291 PRPHQYEFGR----RGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAV 346
Query: 341 INFVTNFG 348
F G
Sbjct: 347 RAFAAQIG 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-07
Identities = 84/518 (16%), Positives = 146/518 (28%), Gaps = 202/518 (38%)
Query: 3 CVRENLLKL-TSYRKVHKALCH--SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLW 59
E L L +Y + L + + + G I W
Sbjct: 169 YFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV--FTQG--LNILE-----W 218
Query: 60 ITEG--------LRS---SIPL----KLKHFLTSTGLLHLGGLRTA-LYNYLFAKSHNGS 103
+ L S S PL +L H++ + L G L +YL + +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT---AKLLGFTPGELRSYLKGATGHSQ 275
Query: 104 FIL-----RIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQ 158
++ D+ ++ F + + L +IGV R
Sbjct: 276 GLVTAVAIAETDSWES-FFVSVRKAITV-LFFIGV-------------------R----- 309
Query: 159 KEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSG-------LVPKYDNKCRNLTQEQIDEK 211
Y+ + + S I +D++++ L NLTQEQ+ +
Sbjct: 310 -----------CYEAYPNTSLPPSILEDSLENNEGVPSPMLS------ISNLTQEQVQDY 352
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPT--YHFANVVDD 269
+ + TN V IS N +++ G P Y
Sbjct: 353 VNK----------TNSHLPAGKQVE--IS---LVNGAKNLVVS--GPPQSLYGL------ 389
Query: 270 HHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGDMSVEA 329
+ LR KA P L+ + S+R+ S
Sbjct: 390 -----NLTLRKA-------------KA----PSG-------LDQSRIPFSERKLKFSN-- 418
Query: 330 IRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFG 389
FLP V FH S L + + + + N + K+
Sbjct: 419 ----RFLP------VA---SPFH-------SHL--LVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 390 IFWFQTFFNEFDLQ---------LVN---------ENSCKVDLTNLNEFNRAEIRRVMST 431
I + T F+ DL+ +V+ E + + T++ +F
Sbjct: 457 IPVYDT-FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--------- 506
Query: 432 GTQEEIRSLVEKLKQ----HIVNEFPNSSLQI--DDDY 463
G + L + K ++ +L I DDDY
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVI---VAGTLDINPDDDY 541
Score = 38.9 bits (90), Expect = 0.006
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 511 LNLTLGILEH--LIP--------RLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
L L+ G LEH L+P +LQ + F L P F+ + E +T +L+
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQ--EQFN-KILPEPTEGFAADD--EPTTPAELVGK 63
Query: 561 SL---SGLKQGPSVGEMMEILTK-----ENTIRRLRDV 590
L S L + VG+ ++L EN D+
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Score = 34.6 bits (79), Expect = 0.11
Identities = 47/294 (15%), Positives = 94/294 (31%), Gaps = 96/294 (32%)
Query: 263 FANVVD--DHHM------NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLN 314
+V + D+H +I ++ ++ I+ FG K
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVIN------NPVNLTIH--FG--GEK----------- 1680
Query: 315 GSKLSKRQGDMSVEAIRNSEFLPNAL---INFVTN---FGGGFHDHQRTSKSQ--LFSMK 366
G ++ + M E I + + + IN + F T +Q L
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT--- 1737
Query: 367 DLVEKVCNNATYNRIKPTIKEFGIFWFQTFF-----NEF-------------D-LQLVN- 406
L+EK A + +K G+ F E+ +++V
Sbjct: 1738 -LMEK----AAFEDLK----SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 407 -----ENSCKVDLTNLNEFNRAEIR--RVMSTGTQEEIRSLVEKLKQH------IVNEFP 453
+ + D + + I RV ++ +QE ++ +VE++ + IVN +
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-Y- 1846
Query: 454 NSSLQIDDDYLNYVL---CWASERIFKLQDLVGK---DFAFIWVKPSIEHLSQH 501
N Q YV A + + + + + D + S+E + H
Sbjct: 1847 NVENQQ------YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 28.5 bits (63), Expect = 8.7
Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 87/232 (37%)
Query: 196 YDNKC-RNLTQEQIDEKLKEN-SKYCIR-----FKLTNHTESWQD--LVYGDISYNVFHN 246
++ L E+I +++ E+ + Y R T T Q + + F
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT---QPALTL---MEKAAFE- 1745
Query: 247 EGDPVIIKSDG-FPT-----------Y----HFANVVDDHHMNISHVL-----RGVEWQI 285
+KS G P Y A+V M+I ++ RG
Sbjct: 1746 -----DLKSKGLIPADATFAGHSLGEYAALASLADV-----MSIESLVEVVFYRG----- 1790
Query: 286 STTKHILIYKAFGWTPPKFAHLPL---LLNLNGSKLSKRQGDMSVEAI------RNSEFL 336
+ + A P+ ++ +N +++ +++ + R +
Sbjct: 1791 -----MTMQVA----VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 337 PNALINFVTNFGGGFHDHQRTSKSQLFSMKDL--VEKVCNNATYNRIKPTIK 386
N+ N Q + DL ++ V N + +++ I
Sbjct: 1842 EIV--NY--NVEN----------QQYVAAGDLRALDTVTNVLNFIKLQK-ID 1878
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 53.0 bits (128), Expect = 2e-07
Identities = 61/305 (20%), Positives = 117/305 (38%), Gaps = 63/305 (20%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G ++ N+ A+ + G LR +DT+ + E VE ++ D++W+G +
Sbjct: 37 GYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNV 96
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199
+Y L+ ++ L++ G AY + ++ R + P ++
Sbjct: 97 RYSSDYFD-------QLHAYAIE-LINKGLAYVDELTPEQIREYRGTLTQ----PGKNSP 144
Query: 200 CRNLTQEQIDEKLK----------ENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNE 247
R+ + ++E L E K C+R K + + +D V I + H
Sbjct: 145 YRDRS---VEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQT 201
Query: 248 GDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPP 302
G+ I +P Y F + + D I+H L +E+Q + +Y P
Sbjct: 202 GNKWCI----YPMYDFTHCISDALEGITHSLCTLEFQD----NRRLYDWVLDNITIPVHP 253
Query: 303 K---FAHLPLLLNLNGSKLSKRQGDMSVE----------------AIRNSEFLPNALINF 343
+ F+ LNL + +SKR+ ++ V +R + ++ F
Sbjct: 254 RQYEFSR----LNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309
Query: 344 VTNFG 348
G
Sbjct: 310 CKRIG 314
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.13
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 10/31 (32%)
Query: 119 EAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149
+A++KL+ LK D + P L
Sbjct: 20 QALKKLQASLKLYA--DDSA--------PAL 40
Score = 29.1 bits (64), Expect = 2.7
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 434 QEEIRSLVEKLKQHIVNEFPNS--SLQID 460
++ ++ L LK + +S +L I
Sbjct: 19 KQALKKLQASLKLYA----DDSAPALAIK 43
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 30.7 bits (70), Expect = 1.5
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 44/113 (38%)
Query: 236 YGDISYNVFHNEGDPVIIKSDGFPTY-------H-------FANVVD----DHHMNISHV 277
GD E D VII+ DG TY H + ++ DHH I +
Sbjct: 202 KGD--------EKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRM 253
Query: 278 LRGVEWQISTTKHILIYKAFGWTPPKFAHLPL-LLNL--NGS--KLSKRQGDM 325
+E G+ + +++L +G K+SKR G+
Sbjct: 254 KAAME-------------FLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNF 293
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 29.5 bits (67), Expect = 3.9
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 393 FQTFFNEF--------------DLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIR 438
F F F +L + S ++ +++ FN + + T+ +
Sbjct: 8 FIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNE-NLAYEIINNTKIILP 66
Query: 439 SLVEKLKQHIVNEFPNSSLQIDDDYL 464
L L HI+ P I+ ++
Sbjct: 67 ILEGALYDHILQLDPTYQRDIEKVHV 92
>2pg4_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, DNA binding protein; HET: MSE CIT; 2.21A
{Aeropyrum pernix} SCOP: a.4.5.48
Length = 95
Score = 27.7 bits (61), Expect = 4.0
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 520 HLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSL--SGLKQGPSVGEMMEI 577
HLI L T F + L E GV TF L+ L +GL + ++ ++
Sbjct: 13 HLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKT 72
Query: 578 LTKENTIRRLRDVLEYSRTVKNS 600
L RRL + LE R V S
Sbjct: 73 LKLTEKGRRLAECLEKCRDVLGS 95
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 28.4 bits (64), Expect = 6.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 295 KAFGWTPPKFAHLPLLLNLNGSKLSK 320
G++ P H P+L+ L+G K+S
Sbjct: 192 PRLGYSSPVCLHTPILVGLDGQKMSS 217
>3n3y_A Thymidylate synthase THYX; transferase; HET: UMP FAD; 2.31A
{Helicobacter pylori} PDB: 3ah5_A*
Length = 216
Score = 28.3 bits (63), Expect = 6.7
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 429 MSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNY 466
S +E++ L + L + E + +D L +
Sbjct: 183 SSNKALKEMQDLAKALFDALPGEHQY----LFEDCLKH 216
>3gwc_A TS, tsase, thymidylate synthase THYX; FAD, fdump, flavoprotein,
methyltransferase, nucleotid biosynthesis, transferase;
HET: FAD UFP; 1.90A {Mycobacterium tuberculosis} PDB:
3hzg_A* 2af6_A* 2gq2_A*
Length = 258
Score = 28.1 bits (63), Expect = 7.3
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 429 MSTGTQEEIRSLVEKLKQHIVNEFPNS 455
S EIR L + + + P
Sbjct: 200 ASEHADVEIRRLAIECLRQLAAVAPAV 226
>3fnn_A TS, tsase, thymidylate synthase THYX; FAD, flavoprotein,
methyltransferase, nucleotide biosynthesis, transferase;
HET: FAD; 2.30A {Corynebacterium glutamicum} PDB: 3ge9_A
Length = 256
Score = 28.1 bits (63), Expect = 8.2
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 429 MSTGTQEEIRSLVEKLKQHIVNEFPN 454
S EIR + + + + P
Sbjct: 206 ASEHADVEIREVAVECLRKLQVAAPT 231
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 28.1 bits (63), Expect = 8.8
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 393 FQTFFNEF--------------DLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIR 438
F F F +L + S ++ +++ FN + + T+ +
Sbjct: 14 FIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNE-NLAYEIINNTKIILP 72
Query: 439 SLVEKLKQHIVNEFPNSSLQIDD 461
L L HI+ P I+
Sbjct: 73 ILEGALYDHILQLDPTYQRDIEK 95
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA
polymerase subunit; 1.9A {Saccharomyces cerevisiae}
SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E
1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E*
1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E
1y1v_E 1y1w_E 1y1y_E ...
Length = 215
Score = 27.8 bits (61), Expect = 9.4
Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 17/151 (11%)
Query: 197 DNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSD 256
+ E+ K + + F + ++ I
Sbjct: 57 MMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVI---HIQEKNFQTGIFVYQ 113
Query: 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316
T +V ++ T H L+ K + + L L S
Sbjct: 114 NNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKES 173
Query: 317 KLSK-------------RQGDMSVEAIRNSE 334
+L + ++G++ V+ IR SE
Sbjct: 174 QLPRIQRADPVALYLGLKRGEV-VKIIRKSE 203
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 27.8 bits (62), Expect = 9.8
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 224 LTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPT-----YHFANVVDDHHMNI---S 275
T S+ +G N + P ++ + + V + + +NI +
Sbjct: 50 TRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENT 109
Query: 276 HVLR----GVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK 320
V + I+TT + + P G S+
Sbjct: 110 VVTNISADDAYYTIATTTETYHADYIFVATGDY-NFPKKPFKYGIHYSE 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,107,304
Number of extensions: 545259
Number of successful extensions: 1292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1239
Number of HSP's successfully gapped: 47
Length of query: 605
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 506
Effective length of database: 3,937,614
Effective search space: 1992432684
Effective search space used: 1992432684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)