RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16872
(605 letters)
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 239 bits (610), Expect = 9e-75
Identities = 118/294 (40%), Positives = 178/294 (60%), Gaps = 13/294 (4%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
TG H+G AL+NY +A+ + G FI+RIEDTD+ R+VP A E++ LKW+G+ DE
Sbjct: 11 TGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEG 70
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
VGG +GPY QS+RL LYQK + LL G AY+ F + L IRK+ YD
Sbjct: 71 PDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK------GGYDG 124
Query: 199 KCRNLTQEQIDEKLKENSKYCIRFKLTNH-TESWQDLVYGDISYNVFHNEGDPVIIKSDG 257
+ RN+ E+ +E+ + + IR K+ T +D + G + Y+ D V++KSDG
Sbjct: 125 RARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDN-QEIPDVVLLKSDG 183
Query: 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSK 317
+PTYH ANVVDDH M ++ V+R EW +ST H+L+Y+AFGW P+F H+PLL N + +K
Sbjct: 184 YPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTK 243
Query: 318 LSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371
+SKR+ S++ + FLP AL N++ G D + ++F++++ ++
Sbjct: 244 ISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR-----EIFTLEEFIQA 292
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 186 bits (473), Expect = 1e-54
Identities = 59/371 (15%), Positives = 114/371 (30%), Gaps = 77/371 (20%)
Query: 23 HSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLL 82
H+ V RF P P G L
Sbjct: 17 HTTVHTRFPPEPN--------------------------------------------GYL 32
Query: 83 HLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVG 142
H+G ++ N+ A+ + G LR +DT+ + E VE ++ D++W+G
Sbjct: 33 HIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHW------- 85
Query: 143 GNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRN 202
+ S L++ G AY + ++ R + G Y ++
Sbjct: 86 -SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVE 144
Query: 203 LTQEQID---EKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFP 259
+ E K C+R K+ S ++ + Y + E K +P
Sbjct: 145 ENLALFEKMRAGGFEEGKACLRAKI--DMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYP 202
Query: 260 TYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW----------------TPPK 303
Y F + + D I+H L +E+Q + + + T
Sbjct: 203 MYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMS 262
Query: 304 FAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLF 363
L LL+ + ++ +R + ++ F G D + ++
Sbjct: 263 KRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQD----NTIEMA 318
Query: 364 SMKDLVEKVCN 374
S++ + + N
Sbjct: 319 SLESCIREDLN 329
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 180 bits (457), Expect = 8e-53
Identities = 79/317 (24%), Positives = 123/317 (38%), Gaps = 69/317 (21%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
+ RFAPSP+ G LH
Sbjct: 1 TQYIGRFAPSPS--------------------------------------------GELH 16
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
G L AL +YL A++ G +++RIED D R VP A E + + L+ G+
Sbjct: 17 FGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHW-------- 68
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
+ QS+R Y++ + L G +Y C C+ +R+ I V +
Sbjct: 69 DGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNA-- 126
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHF 263
+R + + + D + G I + D +I + DG Y+
Sbjct: 127 ---------------AVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNL 171
Query: 264 ANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323
A VVDDH ++ ++RG + T + I +Y+ FGW P + HLPL LN G+KLSK+
Sbjct: 172 AVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNH 231
Query: 324 DMSVEAIRNSEFLPNAL 340
++ L AL
Sbjct: 232 APALPKGDPRPVLIAAL 248
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 86.0 bits (211), Expect = 6e-19
Identities = 34/258 (13%), Positives = 80/258 (31%), Gaps = 10/258 (3%)
Query: 77 TSTGLLHLGGLRTA-----LYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWI 131
T +G +H+G R + + L K + I +D D+ R VP V + +D +
Sbjct: 27 TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGM 86
Query: 132 GVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSG 191
+ ++ +++ + A + + IR K
Sbjct: 87 PISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRD 146
Query: 192 LVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPV 251
+ + NK R + ++ + + D + +EG
Sbjct: 147 KIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVD 206
Query: 252 IIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHIL----IYKAFGWTPPK-FAH 306
I + + + H + G + ++ + + I + +G P +
Sbjct: 207 IRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMY 266
Query: 307 LPLLLNLNGSKLSKRQGD 324
+ + K+S +G+
Sbjct: 267 EFVGIKGQKGKMSGSKGN 284
>d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA
synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Length = 163
Score = 66.5 bits (161), Expect = 2e-13
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 17/179 (9%)
Query: 413 DLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWAS 472
DL L N IR V+S +E++ + + + L +
Sbjct: 1 DLEKLRWMNGKYIREVLS----------LEEVAERVKPFLREAGLSWES-------EAYL 43
Query: 473 ERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFT 532
R +L K +PV + L L +L+ L PRL+ + +T
Sbjct: 44 RRAVELMRPRFDTLKEFPEKARYLFTEDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWT 103
Query: 533 RDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+L LR F+ E+GV+ + LR +L+G + P + E++ +L KE +RRL L
Sbjct: 104 EAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLERAL 162
>d1irxa1 a.97.1.2 (A:320-523) C-terminal domain of class I
lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 204
Score = 55.6 bits (133), Expect = 2e-09
Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 484 KDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREF 543
+++ + ++ + + + + L+ + F+ + L E
Sbjct: 99 RNWVKKYAPEDVKF--SILEKPPEVEVSEDVREAMNEVAEWLENHEEFSVEEFNNILFEV 156
Query: 544 STEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLR 588
+ +G+ + L G ++GP + + L + I+RLR
Sbjct: 157 AKRRGISSREWFSTLYRLFIGKERGPRLASFLASLDRSFVIKRLR 201
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 37.8 bits (87), Expect = 0.003
Identities = 31/189 (16%), Positives = 67/189 (35%), Gaps = 8/189 (4%)
Query: 382 KPTIKEFGIFWFQTFFNEF-DLQLVNENSCKVDLTNLNEFNRAEIRRVMST-GTQEEIRS 439
+K+ + + D+ ++ NS D + N RA R M +
Sbjct: 59 NLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEY 118
Query: 440 LVEKLKQHIVNEFPN-----SSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPS 494
L E L++ + +E P + +N + + L+DL+ + V +
Sbjct: 119 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMV-VANA 177
Query: 495 IEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTF 554
+ LS+ +L+L + L+ L C + + + L ++ + E +
Sbjct: 178 VAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSI 237
Query: 555 MKLLRTSLS 563
+ + LS
Sbjct: 238 CERVTPRLS 246
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 36.1 bits (82), Expect = 0.011
Identities = 26/249 (10%), Positives = 58/249 (23%), Gaps = 21/249 (8%)
Query: 83 HLGGLRTA-----LYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDE 137
H+G RT + YL + ++ I D D ++ +
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM 96
Query: 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKS---GLVP 194
+ + A + L K + + D G++
Sbjct: 97 HKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLS 156
Query: 195 KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIK 254
+ D K N + +K++ E +G + +
Sbjct: 157 RQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGA--GRPGWHIECSAMNC 214
Query: 255 SDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLN 314
+ D +++ + G + ++
Sbjct: 215 KQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGM-----------VMVD 263
Query: 315 GSKLSKRQG 323
K+SK G
Sbjct: 264 REKMSKSLG 272
>d1g4us1 a.24.11.1 (S:167-296) SptP tyrosine phosphatase {Salmonella
typhimurium [TaxId: 90371]}
Length = 130
Score = 32.6 bits (74), Expect = 0.045
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 511 LNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPS 570
L++ L L+ +P+L+ D +SL +E ++ G ++ L T+L L + P
Sbjct: 6 LDIALKGLKRTLPQLEQMDG---NSLRENFQEMASGNGP-----LRSLMTNLQNLNKIPE 57
Query: 571 VGEMMEILTK 580
++ + +T
Sbjct: 58 AKQLNDYVTT 67
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 32.6 bits (73), Expect = 0.13
Identities = 31/290 (10%), Positives = 66/290 (22%), Gaps = 45/290 (15%)
Query: 79 TGLLHLGGLRTA-----LYNYLFAKSHN--------------GSFILRIEDTDQTRFVPE 119
LH+G LR + L + + T E
Sbjct: 19 NKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKE 78
Query: 120 AVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTL-LHNGSAYKCFCSDS 178
+ E E + L + ++EV + L + +
Sbjct: 79 KYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY 138
Query: 179 RLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQD----- 233
L + D V++GL+ K + + + + +D
Sbjct: 139 DLLVWESDIVRAGLLQKALALLEQS--PHVFRPREGKYAGALVMDASPVIPGLEDPFFVL 196
Query: 234 --------LVYGDISYNVF-HNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQ 284
DI++ + + + + P Y +
Sbjct: 197 LRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINV 256
Query: 285 ISTTKHI------LIYKAFGWTPPK---FAHLPLLLNLNGSKLSKRQGDM 325
+ + G+ + L G ++S R+G
Sbjct: 257 VDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLA 306
>d1o26a_ d.207.1.1 (A:) Thy1 homologue {Thermotoga maritima [TaxId:
2336]}
Length = 219
Score = 29.7 bits (66), Expect = 0.88
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 411 KVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVL 468
V+ +L F + + Q EI+ + + + P + + +L Y
Sbjct: 163 TVNARSLMNF----LNLRADSHAQWEIQQYALAIARIFKEKCPWTF----EAFLKYAY 212
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
{Escherichia coli [TaxId: 562]}
Length = 338
Score = 29.4 bits (65), Expect = 1.2
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 426 RRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLN----YVLCWASERIFKLQDL 481
+ + + S ++ + + P D ++ W + +
Sbjct: 28 TSFTTNYDEATVNSFIDGMAER---NLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGM 84
Query: 482 VGKDFA-----FIWVKPSIEHLSQHPVESYGK 508
+ + A +W+ P I S E K
Sbjct: 85 IRRLKAKGLKICVWINPYIGQKSPVFKELQEK 116
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 28.8 bits (63), Expect = 1.8
Identities = 29/221 (13%), Positives = 64/221 (28%), Gaps = 17/221 (7%)
Query: 161 VQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCI 220
V + +N D K +++ L + + ++ ++ +KL + +
Sbjct: 19 VHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIV 78
Query: 221 RFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRG 280
+ +H ++ + I N TY + + HV
Sbjct: 79 HYAAESHNDNSLNDPSPFIHTNFIG--------------TYTLLEAARKYDIRFHHVSTD 124
Query: 281 VEWQISTTKHILIYKAFGWTPPKFAHLPLL-LNLNGSKLSKRQGDMSVEAIRNSEFLPNA 339
+ + L G A + S +K D+ V+A S +
Sbjct: 125 EVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSS--TKAASDLIVKAWVRSFGVKAT 182
Query: 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
+ N N+G H + + + + K+ R
Sbjct: 183 ISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVR 223
>d2pg4a1 a.4.5.48 (A:1-92) Uncharacterized protein APE0880.1
{Aeropyrum pernix [TaxId: 56636]}
Length = 92
Score = 26.9 bits (59), Expect = 2.3
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 520 HLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSL--SGLKQGPSVGEMMEI 577
HLI L T F + L E GV TF L+ L +GL + ++ ++
Sbjct: 12 HLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKT 71
Query: 578 LTKENTIRRLRDVLEYSRTV 597
L RRL + LE R V
Sbjct: 72 LKLTEKGRRLAECLEKCRDV 91
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.6 bits (63), Expect = 2.4
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 12/166 (7%)
Query: 382 KPTIKEFGIFWFQTFFNEF-DLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL 440
+ T K+ G + N +L + N+ K DL + N ++ +
Sbjct: 79 RYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAN-----VG-- 131
Query: 441 VEKLKQHIVNEFPNSSLQID-DDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLS 499
++ + E P + D D + R+++ + + + HL
Sbjct: 132 SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT---SRVVHLL 188
Query: 500 QHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFST 545
+L + + +T L+ + ST
Sbjct: 189 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSAST 234
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4
[TaxId: 10665]}
Length = 89
Score = 26.3 bits (58), Expect = 3.3
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 418 NEFNRAEIRRVMSTGTQEEIRSLVEKLKQ 446
+ N+ R+++S TQE+ ++L+++ +
Sbjct: 46 RKLNQNSFRKIVSELTQEDKKTLIDEFNE 74
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 27.7 bits (60), Expect = 3.9
Identities = 19/139 (13%), Positives = 31/139 (22%), Gaps = 10/139 (7%)
Query: 195 KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYG---DISYNVFHNEGDPV 251
KY + QE D E + + L + +E
Sbjct: 165 KYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVT 224
Query: 252 IIKSDG----FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHL 307
+ D + + + P + HL
Sbjct: 225 FVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHL 284
Query: 308 ---PLLLNLNGSKLSKRQG 323
LL +G K+SK G
Sbjct: 285 NVGGFLLGPDGRKMSKTLG 303
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
(Mamestra brassicae) [TaxId: 55057]}
Length = 101
Score = 26.2 bits (58), Expect = 4.6
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI 208
L +KRL V ++ G KC L +DA++ N C+ T+ Q
Sbjct: 15 LANKRL--LVAYVNCVMERG---KCSPEGKELKEHLQDAIE--------NGCKKCTENQ- 60
Query: 209 DEKLKENSKYCIRFKLTNHTESWQDLV 235
++ + I + N E W++L
Sbjct: 61 ----EKGAYRVIEHLIKNEIEIWRELT 83
>d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast
fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 267
Score = 27.3 bits (60), Expect = 5.5
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 88 RTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147
+ A + A S + I+ ++ T E +++ LKW+G+ D+ T GN
Sbjct: 155 KEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALD 214
Query: 148 YLQS---KRLALYQKE 160
L + +++ + E
Sbjct: 215 TLCATLEEKMQFEEGE 230
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of
TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 24.8 bits (54), Expect = 7.9
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 182 LIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKE 214
L RK L+ K+ K L+ EQ L +
Sbjct: 19 LTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQ 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,249,878
Number of extensions: 107384
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 31
Length of query: 605
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 514
Effective length of database: 1,158,166
Effective search space: 595297324
Effective search space used: 595297324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)