BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16874
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
pdb|1E2E|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate,A Magnesium-Ion And
Alf3
pdb|1E2F|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
pdb|1E2G|A Chain A, Human Thymidylate Kinase Complexed With Adp, Tdp And A
Magnesium-Ion
pdb|1E2Q|A Chain A, Human Thymidylate Kinase Complexed With Tp5a And A
Magnesium-Ion
pdb|1E99|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Adp
pdb|1E9A|A Chain A, Human Thymidylate Kinase Complexed With The Bisubstrate
Inhibitor Aztp5a
pdb|1E9B|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Appnp
pdb|1NMX|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Adp
pdb|1NMZ|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Nh2tmp
And Appnhp
pdb|1NN0|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Adp
pdb|1NN1|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Appnhp
pdb|1NN3|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp +
Adp
pdb|1NN5|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp +
Appnhp
Length = 215
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IV EG DR+GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+KK ++
Sbjct: 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D + HLLFSANRWE+ P + + + QG+TL + DRY+FSGVAF+
Sbjct: 68 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 110
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AKE + WC QP+ GLPKPD VL +L +R FG ERYE FQ + + +L
Sbjct: 111 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 170
>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp
And Adp
Length = 215
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IV EG DR+GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+KK ++
Sbjct: 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D + HLLFSANRWE+ P + + + QG+TL + DRY+FSGVAF+
Sbjct: 68 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 110
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AKE + WC QP+ GLPKPD VL +L +R FG ERYE FQ + + +L
Sbjct: 111 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 170
>pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl
Phosphonate Monophosphate And Adp
Length = 232
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IV EG DR+GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+KK ++
Sbjct: 25 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 84
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D + HLLFSANRWE+ P + + + QG+TL + DRY+FSGVAF+
Sbjct: 85 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 127
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AKE + WC QP+ GLPKPD VL +L +R FG ERYE FQ + + +L
Sbjct: 128 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 187
>pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Appnhp
Length = 209
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IV EG DR+GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+KK ++
Sbjct: 2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D + HLLFSANRWE+ P + + + QG+TL + DRY+FSGVAF+
Sbjct: 62 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 104
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AKE + WC QP+ GLPKPD VL +L +R FG ERYE FQ + + +L
Sbjct: 105 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 164
>pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Appnp
pdb|1E9D|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Aztmp And Adp
pdb|1E9E|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Dtmp And Adp
Length = 215
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IV EG DR+GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+KK ++
Sbjct: 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D + HLLFSANRWE+ P + + + QG+TL + DRY+FSGVA++
Sbjct: 68 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAYTG 110
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AKE + WC QP+ GLPKPD VL +L +R FG ERYE FQ + + +L
Sbjct: 111 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 170
>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Adp
Length = 217
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 19/182 (10%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IV EG D +GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+KK ++
Sbjct: 8 RGALIVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D + HLLFSANRWE+ P + + + QG+TL + DRY+FSGVAF+
Sbjct: 68 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 110
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGD-ERYEQTDFQRKVAENYE 184
AKE + WC QP+ GLPKPD VL +L +A +R + G+ ERYE FQ + +
Sbjct: 111 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGRARGELERYENGAFQERALRCFH 170
Query: 185 KL 186
+L
Sbjct: 171 QL 172
>pdb|2WWF|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWF|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWF|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Tmp And Adp
pdb|2WWG|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWG|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWG|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Dgmp And Adp
pdb|2WWH|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWH|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWH|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Ap5dt
pdb|2WWI|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
pdb|2WWI|B Chain B, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
pdb|2WWI|C Chain C, Plasmodium Falciparum Thymidylate Kinase In Complex With
Aztmp And Adp
Length = 212
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 17/184 (9%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
M +G FIVFEG DRSGK+TQ+K LV+YL NN+ + + FP+R G II +YL+
Sbjct: 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK 62
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
+ + ++ HLLFSANRWE + L+ +GI + DRY++S
Sbjct: 63 MENSMSNETIHLLFSANRWEHMNEIKSLLLKGIWV-----------------VCDRYAYS 105
Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
GVA+S+ ++ +WC P++GL KPD V + Q R +G+E YE+ + Q+K+
Sbjct: 106 GVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIY 165
Query: 181 ENYE 184
E Y+
Sbjct: 166 ETYK 169
>pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
Deoxythymidine Monophosphate (Azt-Mp)
pdb|2TMK|B Chain B, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
Deoxythymidine Monophosphate (Azt-Mp)
pdb|1TMK|A Chain A, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
pdb|1TMK|B Chain B, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
pdb|3TMK|A Chain A, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|B Chain B, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|C Chain C, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|D Chain D, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|E Chain E, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|F Chain F, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|G Chain G, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|H Chain H, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
Length = 216
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 102/186 (54%), Gaps = 24/186 (12%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KI 63
+ RG I+ EG DR+GKTTQ L L N + + FP+R+ G +I+EYL
Sbjct: 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQPN---CKLLKFPERSTRIGGLINEYLTDDSF 58
Query: 64 ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA 123
+L DQA HLLFSANRWE + K + +G KN+ DRY +SGVA
Sbjct: 59 QLSDQAIHLLFSANRWEIVDKIKKDLLEG-------------KNI----VMDRYVYSGVA 101
Query: 124 FSAAK--EGMDISWCFQPEKGLPKPDAVLLFKLNE-EALQRRKGFGDERYEQTDFQRKVA 180
+SAAK GMD+ WC QP+ GL KPD L + + + GFGDERYE FQ KV
Sbjct: 102 YSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVK 161
Query: 181 ENYEKL 186
+ + KL
Sbjct: 162 QTFMKL 167
>pdb|2V54|A Chain A, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Tdp
pdb|2V54|B Chain B, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Tdp
pdb|2W0S|A Chain A, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Brivudin-5'-Monophosphate
pdb|2W0S|B Chain B, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Brivudin-5'-Monophosphate
Length = 204
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 106/182 (58%), Gaps = 22/182 (12%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158
Query: 185 KL 186
K+
Sbjct: 159 KM 160
>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
Length = 195
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
I FEG D SGKTTQAKKL +YL + P T G ++ E L + EL ++
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGT-KVGEVLREILLTE-ELDERT 59
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
LLF A+R +KLIE+ I ++ D+ DR+ S +A+ +
Sbjct: 60 ELLLFEASR-------SKLIEEKIIPDLKR---------DKVVILDRFVLSTIAYQGYGK 103
Query: 130 GMDISWCFQ----PEKGLPKPDAVLLFKLNEE-ALQRRKGFGDERYEQTDFQRKVAENYE 184
G+D+ + +G+ KPD LL + + AL+R K R+E +F KV + +
Sbjct: 104 GLDVEFIKNLNEFATRGV-KPDITLLLDIPVDIALRRLK--EKNRFENKEFLEKVRKGFL 160
Query: 185 KL 186
+L
Sbjct: 161 EL 162
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
FI FEG D SGK+TQ + L YL K P T TG I + L ++ E+ +A
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGT-ETGEKIRKILLEE-EVTPKA 59
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA--- 126
LF A+R + + + +G + + DRY+ S VA+
Sbjct: 60 ELFLFLASRNLLVTEIKQYLSEGYAVLL-----------------DRYTDSSVAYQGFGR 102
Query: 127 --AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY 183
KE ++ F + GL PD ++ E +RKG + R+E+ +F +V E Y
Sbjct: 103 NLGKEIVEELNDFATD-GLI-PDLTFYIDVDVETALKRKGELN-RFEKREFLERVREGY 158
>pdb|3LD9|A Chain A, Crystal Structure Of Thymidylate Kinase From Ehrlichia
Chaffeensis At 2.15a Resolution
pdb|3LD9|B Chain B, Crystal Structure Of Thymidylate Kinase From Ehrlichia
Chaffeensis At 2.15a Resolution
pdb|3LD9|C Chain C, Crystal Structure Of Thymidylate Kinase From Ehrlichia
Chaffeensis At 2.15a Resolution
pdb|3LD9|D Chain D, Crystal Structure Of Thymidylate Kinase From Ehrlichia
Chaffeensis At 2.15a Resolution
Length = 223
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 27/188 (14%)
Query: 3 SQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNK----NNIPSQFVNFPDRTISTGHIIDEY 58
+Q P FI FEG D SGKTTQ+ L +YL++ NN+ P T+ +
Sbjct: 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV--LTREPGGTL-LNESVRNL 72
Query: 59 LRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYS 118
L K L + L F A R E ++I+ SL +K + DR+
Sbjct: 73 LFKAQGLDSLSELLFFIAMRREH------------FVKIIKPSLMQKKIV----ICDRFI 116
Query: 119 FSGVAFSAAKEGMDISWCFQPEKGLPK--PDAVLLFKLN-EEALQRRKGFGDERYEQTDF 175
S +A+ +G+D S Q + PD + ++ E+L R G E + +F
Sbjct: 117 DSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKNGYE-FADMEF 175
Query: 176 QRKVAENY 183
+V + +
Sbjct: 176 YYRVRDGF 183
>pdb|3V9P|A Chain A, Crystal Structure Of Thymidylate Kinase From Burkholderia
Thailandensis
pdb|3V9P|B Chain B, Crystal Structure Of Thymidylate Kinase From Burkholderia
Thailandensis
Length = 227
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 27/168 (16%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ---FVNFPDRTISTGHIIDEYLRK 61
+ RG FI FEG D +GKTT + D L + P+ V G + E L
Sbjct: 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLN 81
Query: 62 KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG--CTNDRYSF 119
+ + A L+F+ R H +L E L +G +DR++
Sbjct: 82 QPMDLETEALLMFAGRR-------------------EHLALVIEPALARGDWVVSDRFTD 122
Query: 120 SGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLNEEALQRRKG 164
+ A+ G+ E+ G +PD +LF + + R+G
Sbjct: 123 ATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRG 170
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 5 IPRG----AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
+PRG AFI FEG + SGKTT ++ L K+ + + TG I + +
Sbjct: 15 VPRGSHMSAFITFEGPEGSGKTTVINEVYHRLVKDY--DVIMTREPGGVPTGEEIRKIVL 72
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
+ ++ + +LF+A+R E + L+++ + E + L C DRY S
Sbjct: 73 EGNDMDIRTEAMLFAASRREH-----------LVLKVIPALKEGKVVL---C--DRYIDS 116
Query: 121 GVAFSAAKEGMDISWCFQPEK----GLPKPDAVLLFKLNEEALQRR--KGFGDE-RYEQT 173
+A+ G+ + + GL PD + ++ E + R K D+ R +Q
Sbjct: 117 SLAYQGYARGIGVEEVRALNEFAINGL-YPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE 175
Query: 174 D--FQRKVAENYEKL 186
D F KV E Y+++
Sbjct: 176 DLKFHEKVIEGYQEI 190
>pdb|1G3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp)
pdb|1GSI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp)
pdb|1GTV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With
Thymidine-5'-Diphosphate (Tdp)
pdb|1GTV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With
Thymidine-5'-Diphosphate (Tdp)
pdb|1MRN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Bisubstrate Inhibitor
(Tp5a)
pdb|1MRS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With 5-Ch2oh Deoxyuridine
Monophosphate
pdb|1N5I|A Chain A, Crystal Structure Of Inactive Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp) At Ph 4.6 (Resolution 1.85 A)
pdb|1N5J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine Diphosphate
(Tdp) And Thymidine Triphosphate (Ttp) At Ph 5.4 (1.85 A
Resolution)
pdb|1N5K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate
(resolution 2.1 A)
pdb|1N5K|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate
(resolution 2.1 A)
pdb|1N5L|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate,
After Catalysis In The Crystal (2.3 A Resolution)
pdb|1N5L|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate,
After Catalysis In The Crystal (2.3 A Resolution)
pdb|1W2G|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Deoxythymidine (dt)
(2.1 A Resolution)
pdb|1W2G|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Deoxythymidine (dt)
(2.1 A Resolution)
pdb|1W2H|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Azidothymidine
Monophosphate (azt-mp) (2.0 A Resolution)
pdb|1W2H|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Azidothymidine
Monophosphate (azt-mp) (2.0 A Resolution)
Length = 214
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 76/200 (38%), Gaps = 42/200 (21%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGH-IIDEYLRKKIELPDQ 68
I EG D +GK T +KL + FP S I E L E D
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHG--EHGDL 59
Query: 69 AAHL-----LFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA 123
A+ + LF+ +R T+ L +G + I+ DRY S A
Sbjct: 60 ASSVYAMATLFALDRAGAVHTIQGLC-RGYDVVIL----------------DRYVASNAA 102
Query: 124 FSAAK-----EGMDISWCFQPE---KGLPKPDAVLLFKLNEEA--------LQRRKGFGD 167
+SAA+ G +W + E GLPKPD +L ++ E QR G
Sbjct: 103 YSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRAR 162
Query: 168 ERYEQ-TDFQRKVAENYEKL 186
+ YE+ + Q++ Y +L
Sbjct: 163 DNYERDAELQQRTGAVYAEL 182
>pdb|2PLR|A Chain A, Crystal Structure Of Dtmp Kinase (St1543) From Sulfolobus
Tokodaii Strain7
pdb|2PLR|B Chain B, Crystal Structure Of Dtmp Kinase (St1543) From Sulfolobus
Tokodaii Strain7
Length = 213
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 26/152 (17%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL 65
+G I FEG D SGK++QA L D++ K ++ N D II E +K +
Sbjct: 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDW---IHDIIKEAKKKDLLT 59
Query: 66 PDQAA--HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA 123
P + H ++R+ER + ++ G +DRY ++ A
Sbjct: 60 PLTFSLIHATDFSDRYER--YILPXLKSGFI-----------------VISDRYIYTAYA 100
Query: 124 FSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN 155
+ + G+DI W + KPD +++
Sbjct: 101 RDSVR-GVDIDWVKKLYSFAIKPDITFYIRVS 131
>pdb|4TMK|A Chain A, Complex Of E. Coli Thymidylate Kinase With The Bisubstrate
Inhibitor Tp5a
pdb|5TMP|A Chain A, Complex Of E. Coli Thymidylate Kinase With The Bisubstrate
Inhibitor Aztp5a
Length = 213
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 36/184 (19%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ-FVNFPDRTISTGHIIDEYLRKKI-- 63
R +IV EG + +GKTT +V+ L + I F P G + E LR +
Sbjct: 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-----GTQLAEKLRSLLLD 56
Query: 64 -------ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDR 116
+ D+A L+F A R +L+E ++ +L N DR
Sbjct: 57 IKSVGDEVITDKAEVLMFYAAR-------VQLVET-----VIKPALAN----GTWVIGDR 100
Query: 117 YSFSGVAFSAAKEGMD---ISWCFQPEKGLPKPDAVLLFKLNEEA-LQRRKGFGD-ERYE 171
+ S A+ G+D ++ G +PD L + E L+R + G+ +R E
Sbjct: 101 HDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE 160
Query: 172 QTDF 175
Q F
Sbjct: 161 QESF 164
>pdb|3LV8|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Thymidylate
Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str.
N16961 In Complex With Tmp, Thymidine-5'-Diphosphate And
Adp
pdb|3N2I|A Chain A, 2.25 Angstrom Resolution Crystal Structure Of A
Thymidylate Kinase (tmk) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Thymidine
pdb|3N2I|B Chain B, 2.25 Angstrom Resolution Crystal Structure Of A
Thymidylate Kinase (tmk) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Thymidine
Length = 236
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 36/192 (18%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIS-TGHIIDEYLRKKI----- 63
FIV EG + +GK+T + +V+ L +N I + RT G ++ E LR +
Sbjct: 29 FIVIEGLEGAGKSTAIQVVVETLQQNGI-----DHITRTREPGGTLLAEKLRALVKEEHP 83
Query: 64 --ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSG 121
EL D LL A R +L+E I + + DR+ S
Sbjct: 84 GEELQDITELLLVYAAR-------VQLVENVIKPALARG---------EWVVGDRHDMSS 127
Query: 122 VAFSAAKEGM---DISWCFQPEKGLPKPDAVLLFKLNEE-ALQRRKGFGD-ERYEQTD-- 174
A+ + + Q G KPD L ++ + L+R +G G+ +R E+ D
Sbjct: 128 QAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDIS 187
Query: 175 FQRKVAENYEKL 186
F + E Y +L
Sbjct: 188 FFERARERYLEL 199
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 73/178 (41%), Gaps = 46/178 (25%)
Query: 5 IPRGAF--IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK 62
+PRG+ ++ G +GK TQA KL + L IP ISTG E R+
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQ---------ISTG----ELFRRN 58
Query: 63 IELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV 122
IE + L A R+ L+ +T E++ L N + G D Y S
Sbjct: 59 IE---EGTKLGVEAKRY---LDAGDLVPSDLTNELVDDRLNN-PDAANGFILDGYPRSVE 111
Query: 123 AFSAAKE-----GMDISWCFQPEKGLPKPDAVLLFKLNEEA-LQRRKGFGDERYEQTD 174
A E G DI DAVL F+++EE L+R KG G R + TD
Sbjct: 112 QAKALHEMLERRGTDI-------------DAVLEFRVSEEVLLERLKGRG--RADDTD 154
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQ 68
AFI FEG + SGKTT ++ L K+ + + TG I + + + ++ +
Sbjct: 3 AFITFEGPEGSGKTTVINEVYHRLVKDY--DVIMTREPGGVPTGEEIRKIVLEGNDMDIR 60
Query: 69 AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK 128
+LF+A+R E + L+++ + E + L C DRY S +A+
Sbjct: 61 TEAMLFAASRREH-----------LVLKVIPALKEGKVVL---C--DRYIDSSLAYQGYA 104
Query: 129 EGMDISWCFQPEK----GLPKPDAVLLFKLNEEALQRR--KGFGDE-RYEQTD--FQRKV 179
G+ + + GL PD + ++ E + R K D+ R +Q D F KV
Sbjct: 105 RGIGVEEVRALNEFAINGL-YPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKV 163
Query: 180 AENYEKL 186
E Y+++
Sbjct: 164 IEGYQEI 170
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQ 68
AFI FEG + SGKTT ++ L K+ + + TG I + + + ++ +
Sbjct: 27 AFITFEGPEGSGKTTVINEVYHRLVKDY--DVIMTREPGGVPTGEEIRKIVLEGNDMDIR 84
Query: 69 AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK 128
+LF+A+R E + L+++ + E + L C DRY S +A+
Sbjct: 85 TEAMLFAASRREH-----------LVLKVIPALKEGKVVL---C--DRYIDSSLAYQGYA 128
Query: 129 EGMDISWCFQPEK----GLPKPDAVLLFKLNEEALQRR--KGFGDE-RYEQTD--FQRKV 179
G+ + + GL PD + ++ E + R K D+ R +Q D F KV
Sbjct: 129 RGIGVEEVRALNEFAINGL-YPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKV 187
Query: 180 AENYEKL 186
E Y+++
Sbjct: 188 IEGYQEI 194
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 79 WEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ 138
W++ T +L+E TL + S+L N Q Y + G+ + IS F
Sbjct: 680 WQKMQTREELVEASATLIWIASALHAAVNFGQ------YPYGGLILNRPT----ISRRFM 729
Query: 139 PEKGLPKPDAV 149
PEKG P+ DA+
Sbjct: 730 PEKGSPEYDAL 740
>pdb|3UWO|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWO|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 220
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 41/198 (20%)
Query: 5 IPRGA-----FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYL 59
+PRG+ F+ EG + +GK+T L + L + I Q P G + E +
Sbjct: 3 VPRGSHMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-----GTPLAERI 57
Query: 60 RKKIELP-------DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGC 112
R+ + P D L+F+A + + +G +
Sbjct: 58 RELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVV----------------- 100
Query: 113 TNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEE-ALQRRKGFGD- 167
DR++ + A+ G+ + E +G +PD L+F L E L R G
Sbjct: 101 LCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL 160
Query: 168 ERYEQTD--FQRKVAENY 183
+R+EQ D F V + Y
Sbjct: 161 DRFEQEDRRFFEAVRQTY 178
>pdb|3UWK|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWK|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 232
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 41/198 (20%)
Query: 5 IPRGA-----FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYL 59
+PRG+ F+ EG + +GK+T L + L + I Q P G + E +
Sbjct: 15 VPRGSHMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-----GTPLAERI 69
Query: 60 RKKIELP-------DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGC 112
R+ + P D L+F+A + + +G +
Sbjct: 70 RELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVV----------------- 112
Query: 113 TNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEE-ALQRRKGFGD- 167
DR++ + A+ G+ + E +G +PD L+F L E L R G
Sbjct: 113 LCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL 172
Query: 168 ERYEQTD--FQRKVAENY 183
+R+EQ D F V + Y
Sbjct: 173 DRFEQEDRRFFEAVRQTY 190
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 2 ASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLN 33
S +PRG ++ G SGK+T ++DYLN
Sbjct: 118 VSDVPRG-LVLVTGPTGSGKSTTLAAMLDYLN 148
>pdb|4EDH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4EDH|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4ESH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With
Deoxythymidine.
pdb|4GMD|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|C Chain C, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|D Chain D, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
Length = 213
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 36/190 (18%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP- 66
G F+ EG + +GK+T L + L + I Q P G + E +R+ + P
Sbjct: 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-----GTPLAERIRELLLAPS 60
Query: 67 ------DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
D L+F+A + + +G + DR++ +
Sbjct: 61 DEPMAADTELLLMFAARAQHLAGVIRPALARGAVV-----------------LCDRFTDA 103
Query: 121 GVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEE-ALQRRKGFGD-ERYEQTD- 174
A+ G+ + E +G +PD L+F L E L R G +R+EQ D
Sbjct: 104 TYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDR 163
Query: 175 -FQRKVAENY 183
F V + Y
Sbjct: 164 RFFEAVRQTY 173
>pdb|3UXM|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|C Chain C, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|D Chain D, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 211
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 36/190 (18%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP- 66
G F+ EG + +GK+T L + L + I Q P G + E +R+ + P
Sbjct: 2 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-----GTPLAERIRELLLAPS 56
Query: 67 ------DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
D L+F+A + + +G + DR++ +
Sbjct: 57 DEPMAADTELLLMFAARAQHLAGVIRPALARGAVV-----------------LCDRFTDA 99
Query: 121 GVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEE-ALQRRKGFGD-ERYEQTD- 174
A+ G+ + E +G +PD L+F L E L R G +R+EQ D
Sbjct: 100 TYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDR 159
Query: 175 -FQRKVAENY 183
F V + Y
Sbjct: 160 RFFEAVRQTY 169
>pdb|1SVL|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVM|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|D Chain D, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|E Chain E, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|F Chain F, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVO|A Chain A, Structure Of Sv40 Large T Antigen Helicase Domain
pdb|1SVO|B Chain B, Structure Of Sv40 Large T Antigen Helicase Domain
Length = 377
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN----NIPSQFVNFPDRTISTGHIID 56
M IP+ + +F+G SGKTT A L++ N+P +NF G ID
Sbjct: 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF-----ELGVAID 216
Query: 57 EYL 59
++L
Sbjct: 217 QFL 219
>pdb|1N25|A Chain A, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
pdb|1N25|B Chain B, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
Length = 368
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN----NIPSQFVNFPDRTISTGHIID 56
M IP+ + +F+G SGKTT A L++ N+P +NF G ID
Sbjct: 153 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF-----ELGVAID 207
Query: 57 EYL 59
++L
Sbjct: 208 QFL 210
>pdb|2H1L|A Chain A, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|B Chain B, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|C Chain C, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|D Chain D, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|E Chain E, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|F Chain F, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|G Chain G, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|H Chain H, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|I Chain I, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|J Chain J, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|K Chain K, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|L Chain L, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
Length = 370
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN----NIPSQFVNFPDRTISTGHIID 56
M IP+ + +F+G SGKTT A L++ N+P +NF G ID
Sbjct: 155 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF-----ELGVAID 209
Query: 57 EYL 59
++L
Sbjct: 210 QFL 212
>pdb|4E2I|A Chain A, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|B Chain B, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|C Chain C, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|D Chain D, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|E Chain E, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|F Chain F, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|G Chain G, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|H Chain H, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|I Chain I, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|J Chain J, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|K Chain K, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|L Chain L, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
Length = 362
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN----NIPSQFVNFPDRTISTGHIID 56
M IP+ + +F+G SGKTT A L++ N+P +NF G ID
Sbjct: 147 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF-----ELGVAID 201
Query: 57 EYL 59
++L
Sbjct: 202 QFL 204
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase
Of Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44
IV G GKT +KKL YLN +P++ N
Sbjct: 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
H256a Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
H256a Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGH----IIDEYLRKKIE 64
IV G GKT +KKL YLN F+ P R + G ++ Y +
Sbjct: 40 TLIVMVGLPARGKTYISKKLTRYLN-------FIGVPTREFNVGQYRRDMVKTYKSFEFF 92
Query: 65 LPD 67
LPD
Sbjct: 93 LPD 95
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And
Phosphate
Length = 469
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGH----IIDEYLRKKIE 64
IV G GKT +KKL YLN F+ P R + G ++ Y +
Sbjct: 40 TLIVMVGLPARGKTYISKKLTRYLN-------FIGVPTREFNVGQYRRDMVKTYKSFEFF 92
Query: 65 LPD 67
LPD
Sbjct: 93 LPD 95
>pdb|4E5U|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate.
pdb|4E5U|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate
Length = 213
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 34/179 (18%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP- 66
G F+ EG + +GK+T L + L + I Q P G + E +R+ + P
Sbjct: 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-----GTPLAERIRELLLAPS 60
Query: 67 ------DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
D L F+A + + +G + DR++ +
Sbjct: 61 DEPXAADTELLLXFAARAQHLAGVIRPALARGAVV-----------------LCDRFTDA 103
Query: 121 GVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEE-ALQRRKGFGD-ERYEQTD 174
A+ G+ + E +G +PD L+F L E L R G +R+EQ D
Sbjct: 104 TYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQED 162
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Empty 6-Pf-2k Active Site
Length = 468
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGH----IIDEYLRKKIE 64
IV G GKT +KKL YLN F+ P R + G ++ Y +
Sbjct: 39 TLIVMVGLPARGKTYISKKLTRYLN-------FIGVPTREFNVGQYRRDMVKTYKSFEFF 91
Query: 65 LPD 67
LPD
Sbjct: 92 LPD 94
>pdb|2P91|A Chain A, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|B Chain B, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|C Chain C, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|D Chain D, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
Length = 285
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 96 EIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN 155
E+ LE ++ L G N+R G+A S +EG +++ + KL
Sbjct: 13 EVFMGLLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP------------KLE 60
Query: 156 EEALQRRKGFGDERYEQTD 174
+ + KGFG + + D
Sbjct: 61 KRVREIAKGFGSDLVVKCD 79
>pdb|3EGM|A Chain A, Structural Basis Of Iron Transport Gating In
Helicobacter Pylori Ferritin
pdb|3EGM|B Chain B, Structural Basis Of Iron Transport Gating In
Helicobacter Pylori Ferritin
pdb|3EGM|C Chain C, Structural Basis Of Iron Transport Gating In
Helicobacter Pylori Ferritin
pdb|3EGM|D Chain D, Structural Basis Of Iron Transport Gating In
Helicobacter Pylori Ferritin
pdb|3EGM|E Chain E, Structural Basis Of Iron Transport Gating In
Helicobacter Pylori Ferritin
pdb|3EGM|F Chain F, Structural Basis Of Iron Transport Gating In
Helicobacter Pylori Ferritin
Length = 181
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 24 QAKKLVDYLNKNNIPSQFVNF 44
AKKL+ +LN+NN+P Q +
Sbjct: 67 HAKKLIIFLNENNVPVQLTSI 87
>pdb|3BVE|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
Length = 181
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 24 QAKKLVDYLNKNNIPSQFVNF 44
AKKL+ +LN+NN+P Q +
Sbjct: 67 HAKKLIIFLNENNVPVQLTSI 87
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 68/170 (40%), Gaps = 44/170 (25%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
++ G +GK TQA KL + L IP ISTG E R+ IE +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLG---IPQ---------ISTG----ELFRRNIE---EGT 43
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE- 129
L A R+ L+ +T E++ L N + G D Y S A E
Sbjct: 44 KLGVEAKRY---LDAGDLVPSDLTNELVDDRLNN-PDAANGFILDGYPRSVEQAKALHEM 99
Query: 130 ----GMDISWCFQPEKGLPKPDAVLLFKLNEEA-LQRRKGFGDERYEQTD 174
G DI DAVL F+++EE L+R KG G R + TD
Sbjct: 100 LERRGTDI-------------DAVLEFRVSEEVLLERLKGRG--RADDTD 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,010,020
Number of Sequences: 62578
Number of extensions: 241812
Number of successful extensions: 821
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 42
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)