BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16874
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54GN2|KTHY_DICDI Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1
Length = 222
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 133/223 (59%), Gaps = 20/223 (8%)
Query: 3 SQIPRGAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVNFPDRTISTGHIIDEYLRK 61
+ I RG FI+FEG DR GK+TQ + L +++ N +P++ + FPDRT G II++YL+
Sbjct: 14 TMIKRGLFILFEGVDRVGKSTQVQSLTNHISNVQKLPTKSLRFPDRTTPIGQIINQYLQN 73
Query: 62 KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSG 121
+ D+A HLLFS+NRWE ++ +L+ G + + DRYS+SG
Sbjct: 74 ATNMDDRALHLLFSSNRWEARDSILELLNNGTNIVV-----------------DRYSYSG 116
Query: 122 VAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE 181
VA+SAAK G+D WC+ EKGLPKPD + ++ E +R +G ERYE+ +FQ+K+ +
Sbjct: 117 VAYSAAK-GIDFDWCYACEKGLPKPDLIFYLSMSSEDATKRGEYGGERYEKLEFQKKIKQ 175
Query: 182 NY-EKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
Y EKL D+ W I+A++ ID + + I KK Q + +
Sbjct: 176 IYEEKLVDDQWKIINANRSIDEISNEISSIFDSEFKKIQLTSI 218
>sp|P23919|KTHY_HUMAN Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4
Length = 212
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 126/220 (57%), Gaps = 20/220 (9%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IV EG DR+GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+KK ++
Sbjct: 5 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 64
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D + HLLFSANRWE+ P + + + QG+TL + DRY+FSGVAF+
Sbjct: 65 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 107
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AKE + WC QP+ GLPKPD VL +L +R FG ERYE FQ + + +L
Sbjct: 108 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 167
Query: 187 -KDNI--WIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
KD W +DA K I+ + ++ + D I+ + PL
Sbjct: 168 MKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIRTATEKPL 207
>sp|Q91FS1|KTHY_IIV6 Putative thymidylate kinase 251L OS=Invertebrate iridescent virus 6
GN=IIV6-251L PE=3 SV=1
Length = 213
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 26/222 (11%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RG IVFEGCD++GK+TQ K L + L + NI + +NFP+RT TG +ID+YL+ KI L
Sbjct: 13 RGLLIVFEGCDKTGKSTQCKLLFEELKQKNIEVRMINFPNRTTQTGKLIDQYLKGKIYLS 72
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D+ H+LFS NRWE T+ I GIT+ I DRYS+SG+AFS
Sbjct: 73 DEDIHILFSKNRWEIIDTIKTNILNGITVII-----------------DRYSYSGIAFSV 115
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AK G+D WC Q E GL KPD ++ + + R G+G E YE+ + Q KV + YEK+
Sbjct: 116 AK-GLDFQWCKQTENGLLKPDIIIYLTGQTKNMASRNGYGSEIYERIEIQDKVKKCYEKM 174
Query: 187 KD-NIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLESNK 227
+ +W I+AD+D+ LI+K + I+K FS LE+NK
Sbjct: 175 IEIPLWNKINADQDV----LIIKKQIETIIQK--FS-LENNK 209
>sp|P97930|KTHY_MOUSE Thymidylate kinase OS=Mus musculus GN=Dtymk PE=2 SV=2
Length = 212
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 128/226 (56%), Gaps = 22/226 (9%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
MAS+ RGA IV EG DR+GKTTQ KLV L + ++ + FP+R+ G +++ YL
Sbjct: 1 MASR--RGALIVLEGVDRAGKTTQGLKLVTALCASGHRAELLRFPERSTEIGKLLNSYLE 58
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
KK EL D + HLLFSANRWE+ P + + QG+TL + DRY+FS
Sbjct: 59 KKTELEDHSVHLLFSANRWEQVPLIKAKLNQGVTLVL-----------------DRYAFS 101
Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
GVAF+ AKE + WC QP+ GLPKPD +L +L R FG ERYE FQ++V
Sbjct: 102 GVAFTGAKENFSLDWCKQPDVGLPKPDLILFLQLQLLDAAARGEFGLERYETGTFQKQVL 161
Query: 181 ENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
+++L K+ W +DA K I+ + ++ D I+ + PL
Sbjct: 162 LCFQQLMEEKNLNWKVVDASKSIEEVHKEIRAHSEDAIRNAAQRPL 207
>sp|P36590|KTHY_SCHPO Thymidylate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=tmp1 PE=2 SV=2
Length = 210
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 24/211 (11%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RG IV EG DRSGK+TQ + LVD L + ++ FPDRT + G ID+YL++ ++L
Sbjct: 6 RGRLIVIEGLDRSGKSTQCQLLVDKLISQHEKAELFKFPDRTTAIGKKIDDYLKESVQLN 65
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
DQ HLLFSANRWE + + I +G+T C DRY+FSG+AFSA
Sbjct: 66 DQVIHLLFSANRWETIQYIYEQINKGVT-----------------CILDRYAFSGIAFSA 108
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AK G+D WC P++GLP+PD V+ ++ R +G+ERYE+ + Q KV +N+++L
Sbjct: 109 AK-GLDWEWCKSPDRGLPRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEKVLKNFQRL 167
Query: 187 KDNI------WIDIDADKDIDTLGLIVKDIV 211
+ +I +DA ++ + + D+V
Sbjct: 168 QKEFREEGLEFITLDASSSLEDVHSQIVDLV 198
>sp|Q22018|KTHY_CAEEL Probable thymidylate kinase OS=Caenorhabditis elegans GN=R53.2 PE=3
SV=1
Length = 218
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 126/213 (59%), Gaps = 28/213 (13%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI--------PSQFVN-FPDRTIST 51
MA+ RG IVFEG DRSGK+TQAK+LV+ +NK + PS + FPDR+ S
Sbjct: 1 MATDQKRGLLIVFEGLDRSGKSTQAKRLVESINKKSTESGDASSSPSAVLQAFPDRSSSI 60
Query: 52 GHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG 111
G +ID+YLRK+I++ + A HLLFSA+R+ + + I +GI D
Sbjct: 61 GKLIDQYLRKEIDMDEHALHLLFSADRFSKNQMIRDNIAKGI---------------DVI 105
Query: 112 CTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYE 171
C DRY +SGVA+S AK G+ W + GLPKPDAVL F ++ E +R GFG+ER E
Sbjct: 106 C--DRYCYSGVAYSLAK-GLPEQWVRSSDVGLPKPDAVLFFDVSPEVAAQRGGFGEERLE 162
Query: 172 QTDFQRKVAENYEKLKDNI-WIDIDADKDIDTL 203
Q+KVA L+D+ W ++AD D+D++
Sbjct: 163 TATIQQKVAAVMPTLRDDAYWKTVNADGDLDSV 195
>sp|Q80DS7|KTHY_CWPXG Thymidylate kinase OS=Cowpox virus (strain GRI-90 / Grishak) GN=TMK
PE=3 SV=2
Length = 204
Score = 140 bits (353), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 123/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPSNTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE +FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVEFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|Q6RZD4|KTHY_RABPU Thymidylate kinase OS=Rabbitpox virus (strain Utrecht) GN=TMK PE=3
SV=1
Length = 204
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPSNTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|Q80HT9|KTHY_VACCW Thymidylate kinase OS=Vaccinia virus (strain Western Reserve)
GN=TMK PE=3 SV=2
Length = 204
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|Q77TG7|KTHY_VACCT Thymidylate kinase OS=Vaccinia virus (strain Tian Tan) GN=TMK PE=3
SV=1
Length = 204
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|P68693|KTHY_VACCC Thymidylate kinase OS=Vaccinia virus (strain Copenhagen) GN=TMK
PE=1 SV=1
Length = 204
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|Q76RA8|KTHY_VACCA Thymidylate kinase OS=Vaccinia virus (strain Ankara) GN=TMK PE=3
SV=1
Length = 204
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|Q8QMQ7|KTHY_CWPXB Thymidylate kinase OS=Cowpox virus (strain Brighton Red) GN=TMK
PE=3 SV=2
Length = 204
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPSNTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVAFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|Q8JL72|KTHY_ECTVM Thymidylate kinase OS=Ectromelia virus (strain Moscow) GN=TMK PE=3
SV=2
Length = 204
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPSNTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + R G+E YE +FQ+KV + Y+
Sbjct: 102 AAAK-GAPMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVEFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ +
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAM 192
>sp|P33803|KTHY_VAR67 Thymidylate kinase OS=Variola virus (isolate Human/India/Ind3/1967)
GN=TMK PE=3 SV=1
Length = 205
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 26/215 (12%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPTNTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+ AK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+
Sbjct: 102 ATAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVAFQQKVLQEYK 158
Query: 185 KL----KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ +D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGEDIHWQIISSEFEEDVKKELIKNIVIEAI 193
>sp|Q8QQ21|KTHY_CAMPS Thymidylate kinase OS=Camelpox virus (strain CMS) GN=TMK PE=3 SV=1
Length = 204
Score = 137 bits (344), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESILANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + K G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYEFGLPKPDLVIFLESGSKEI--NKNVGEEIYEDVAFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|Q8V2K9|KTHY_CAMPM Thymidylate kinase OS=Camelpox virus (strain M-96) GN=TMK PE=3 SV=2
Length = 204
Score = 137 bits (344), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+ RGA IVFEG D+SGKTTQ +++ + N I +++NFP R+ TG +ID+YL +K
Sbjct: 1 MSRGALIVFEGLDKSGKTTQCMNIMESILANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
D +LLF ANRWE + + +EQGITL + DRY+FSGVA+
Sbjct: 59 YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
+AAK G ++ E GLPKPD V+ + + + K G+E YE FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYEFGLPKPDLVIFLESGSKEI--NKNVGEEIYEDVAFQQKVLQEYK 158
Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
K+ D W I ++ + D ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192
>sp|P00572|KTHY_YEAST Thymidylate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=CDC8 PE=1 SV=2
Length = 216
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 103/188 (54%), Gaps = 24/188 (12%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KI 63
+ RG I+ EG DR+GKTTQ L L N + + FP+R+ G +I+EYL
Sbjct: 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQPN---CKLLKFPERSTRIGGLINEYLTDDSF 58
Query: 64 ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA 123
+L DQA HLLFSANRWE + K + +G KN+ DRY +SGVA
Sbjct: 59 QLSDQAIHLLFSANRWEIVDKIKKDLLEG-------------KNI----VMDRYVYSGVA 101
Query: 124 FSAAK--EGMDISWCFQPEKGLPKPDAVLLFKLNE-EALQRRKGFGDERYEQTDFQRKVA 180
+SAAK GMD+ WC QP+ GL KPD L + + + GFGDERYE FQ KV
Sbjct: 102 YSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVK 161
Query: 181 ENYEKLKD 188
+ + KL D
Sbjct: 162 QTFMKLLD 169
>sp|Q8U071|KTHY_PYRFU Probable thymidylate kinase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=tmk PE=3 SV=1
Length = 210
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 103/218 (47%), Gaps = 50/218 (22%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDY---------LNKNNIPSQFVNFPDRTISTGHII 55
+ RG FIV EG D SGKTTQA+ L + L K ++F + + G II
Sbjct: 1 MKRGLFIVLEGIDGSGKTTQARLLARWFEDNGFKVVLTKEPTDTEFGKIIRKLVLEGSII 60
Query: 56 DEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG--CT 113
D +I L +A LLF+A+R E + K+IE L +G
Sbjct: 61 DG---GRISL--EAEALLFAADRAEH---VKKIIEPA---------------LREGKVVI 97
Query: 114 NDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL-NEEALQRRKGFGDERYEQ 172
+DRY +S +A+ A+ G+++ W + K P PD +L + E ++R K +R Q
Sbjct: 98 SDRYFYSSLAYQWAR-GLNLEWLIEINKFAPHPDIAILLDIPPREGIKRIK----KRSSQ 152
Query: 173 TDF------QRKVAENYEKLK---DNIWIDIDADKDID 201
T+F Q KV ENY KL D I I IDA K ++
Sbjct: 153 TEFDKLFKLQEKVRENYIKLAKMFDEIKI-IDATKSVE 189
>sp|O59366|KTHY_PYRHO Probable thymidylate kinase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=tmk PE=3 SV=1
Length = 205
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 38/196 (19%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDY---------LNKNNIPSQFVNFPDRTISTGHIIDE 57
RG FIV EG D SGKTTQAK L ++ L K S+ R I +ID
Sbjct: 2 RGYFIVLEGIDGSGKTTQAKLLAEWFEDKGYEVLLTKEPTDSELGKLIRRIILEESVIDG 61
Query: 58 YLRKKIELPDQAAHLLFSANRWE--REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTND 115
++ +A LLF+A+R E ++ L L E + + C D
Sbjct: 62 S-----KISYEAEALLFAADRAEHVKKIILPALSEGKVVI----------------C--D 98
Query: 116 RYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL-NEEALQRRK--GFGDERYEQ 172
RY +S +A+ A+ G+D++W Q P+PD +L L +E+L+R K G E +
Sbjct: 99 RYFYSSLAYQWAR-GLDLNWLIQVNSFAPRPDLAILLDLPVKESLRRIKLRGTLTEFDKI 157
Query: 173 TDFQRKVAENYEKLKD 188
+ QRKV NY KL +
Sbjct: 158 VELQRKVRHNYLKLAE 173
>sp|Q57741|KTHY_METJA Probable thymidylate kinase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=tmk PE=3 SV=1
Length = 188
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 29/191 (15%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
FIVFEG D SGKTTQ+K L ++ F + G II E L K E+ ++
Sbjct: 6 FIVFEGIDGSGKTTQSKLLAKKMD------AFWTYEPSNSLVGKIIREILSGKTEVDNKT 59
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
LLF+A+R E TKLI++ + K D C DRY +S +A+ +
Sbjct: 60 LALLFAADRIEH----TKLIKEEL------------KKRDVVC--DRYLYSSIAYQSV-A 100
Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDERYEQTDFQRKVAENYEKLKD 188
G+D ++ + KPD V L ++ E AL+R K + +E+ DF +KV + Y +L +
Sbjct: 101 GVDENFIKSINRYALKPDIVFLLIVDIETALKRVK--TKDIFEKKDFLKKVQDKYLELAE 158
Query: 189 NI-WIDIDADK 198
+I ID K
Sbjct: 159 EYNFIVIDTTK 169
>sp|Q9V1E9|KTHY_PYRAB Probable thymidylate kinase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=tmk PE=3 SV=1
Length = 205
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 26/190 (13%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK---- 62
RG F+V EG D SGKTTQAK L ++ + P T G +I E + K
Sbjct: 2 RGYFVVLEGIDGSGKTTQAKLLAEWFEEQGWDVLLTKEPTDT-EFGRLIRELVLKNSIID 60
Query: 63 -IELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSG 121
+ +A LLF+A+R E +++ +LE K DRY +S
Sbjct: 61 GSRISYEAEALLFAADRAEH------------VKKVILPALEKGKV----VICDRYLYSS 104
Query: 122 VAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL-NEEALQRRKGFGD--ERYEQTDFQRK 178
+A+ A+ G+ + W Q P+PD +L L +E+++R K G+ E + + QRK
Sbjct: 105 LAYQWAR-GLSLEWLMQINSFAPRPDLAILLDLPVKESIRRTKARGNMSEFDKLLELQRK 163
Query: 179 VAENYEKLKD 188
V NY KL +
Sbjct: 164 VRMNYLKLAE 173
>sp|C0R1X1|KTHY_BRAHW Thymidylate kinase OS=Brachyspira hyodysenteriae (strain ATCC 49526
/ WA1) GN=tmk PE=3 SV=1
Length = 203
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 31/225 (13%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
+G IV EG D SGK++ L D LN I S + P + + L K +
Sbjct: 2 KGKLIVLEGIDGSGKSSIGMMLTDILNNIGIKSIYTFEPTHAYYGSKLRESMLSKDLTPE 61
Query: 67 DQAAHLLFSANRWEREPTLTK-LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
++ + LF A+R E + + I G + + DRY S +A+
Sbjct: 62 EELS--LFIADRKEHIKHMIRPAINDGYVIVL-----------------DRYMHSSIAYQ 102
Query: 126 AAKEGMDISWCFQPEKG-LPKPDAVLLFKLN-EEALQR---RKGFGDERYEQTDFQRKVA 180
AK G+D + + K + +PD V + LN E AL R ++GF D R+E + +V
Sbjct: 103 GAK-GIDKEYIYNLHKDFILEPDLVFILHLNIETALNRIMEKRGFVD-RFENKHYLEEVD 160
Query: 181 ENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLES 225
+ + + IDA KD + + D +++TIK+S+ PL+S
Sbjct: 161 KIFSSFNEPYMHHIDASKDQKS----ICDEILNTIKESKILPLDS 201
>sp|A6UP44|KTHY_METVS Probable thymidylate kinase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=tmk PE=3 SV=1
Length = 198
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 27/180 (15%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
FIVFEG D SGKTTQAK L + LN +++ P T G I E L E +
Sbjct: 4 FIVFEGIDGSGKTTQAKMLAEKLN-----AEYTCEPT-TGKIGRTIREVLSGS-ECKKET 56
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
LLF+A+R E + K++++ DRY +S + + +
Sbjct: 57 LALLFAADRVEHVSEIEKMLQKS------------------HVVTDRYVYSSIIYQTM-Q 97
Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDERYEQTDFQRKVAENYEKLKD 188
G+ + + PD V++ ++ EEAL+R + E +E+ +FQ+K+ + Y K+ +
Sbjct: 98 GISKEFIYSINFFAKIPDIVVILDVDTEEALKRMEFREKEIFEKIEFQKKIKQEYHKIAE 157
>sp|C5A1K2|KTHY_THEGJ Probable thymidylate kinase OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=tmk PE=3 SV=1
Length = 208
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 37/196 (18%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYL----RKKI 63
G F+V EG D +GK+TQAK L + K P T + G +I + + R+ I
Sbjct: 2 GIFVVIEGIDGAGKSTQAKLLAKWFEKKGYEVILTKEPTDT-AFGKLIRKLVLTGGREGI 60
Query: 64 ----ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSF 119
+ +A LLF+A+R E L K +LE+ K +DRY +
Sbjct: 61 IDGARISHEAEALLFAADRAEHVHKLIK------------PALESGKV----VISDRYFY 104
Query: 120 SGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL-NEEALQRRKGFGDERYEQTDF--- 175
S +A+ A+ G+D+ W + +PD V+L L +E+++R G R +T+F
Sbjct: 105 SSLAYQWAR-GLDLQWLIDLNRFAVRPDLVVLLDLPVKESMRRING----RSIKTEFDKI 159
Query: 176 ---QRKVAENYEKLKD 188
Q++V ENY KL +
Sbjct: 160 VELQKRVRENYLKLAE 175
>sp|A3DM71|KTHY_STAMF Probable thymidylate kinase OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=tmk PE=3 SV=1
Length = 199
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 32/216 (14%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD 67
G F+V EG D +GKT+ A KL D+L + + P T+ E L+KK
Sbjct: 6 GFFLVLEGIDGAGKTSIAFKLRDFLVEKGFNVHYTYEPYNTLYV-----EALKKKYNEYR 60
Query: 68 QAA--HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG--CTNDRYSFSGVA 123
A L ++A+R ++H E L +G DRY +S A
Sbjct: 61 DAYLDALTYAADR------------------LVHIRTEILPYLRRGYIVICDRYYYSSAA 102
Query: 124 FSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEE-ALQRRKGFGDE--RYEQTDFQRKVA 180
+ +A +G I W + K KPD + ++ ++RRKG YE+ DF +V
Sbjct: 103 YQSA-QGAPIEWVLEINKYALKPDLTIYLDVDPAIGVKRRKGLNTRFPEYEKLDFLYRVR 161
Query: 181 ENYEKLKDNIW-IDIDADKDIDTLGLIVKDIVIDTI 215
ENY L D + + +DA+++ D + V+ IV++ +
Sbjct: 162 ENYLWLVDKGYMVLVDANREFDKVYRDVEKIVLEHL 197
>sp|Q5JH21|KTHY_PYRKO Probable thymidylate kinase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=tmk PE=3 SV=1
Length = 205
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 33/208 (15%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDY---------LNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
FIV EG D +GK+TQAK L ++ L K + F R + TG E +
Sbjct: 2 FIVLEGIDGAGKSTQAKLLAEWFENRGYEVVLTKEPTDTPFGKLIRRLVLTGG--KEGII 59
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
++ +A LLF+A+R E L K SLE K +DRY +S
Sbjct: 60 DGAKISHEAEALLFAADRAEHVDKLIK------------PSLEAGKV----VISDRYFYS 103
Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN-EEALQ--RRKGFGDERYEQTDFQR 177
+A+ A+ G+D+ W + KPD V L L +E++ R + E + + QR
Sbjct: 104 SLAYQWAR-GLDLEWLIDLNRFAVKPDIVFLLDLPVKESMNRIRSRKVKSEFDKIFELQR 162
Query: 178 KVAENYEKLKDNI--WIDIDADKDIDTL 203
KV ENY KL + I+A +D++T+
Sbjct: 163 KVRENYLKLAEMFPEMKIINAMEDVETV 190
>sp|O67099|KTHY_AQUAE Thymidylate kinase OS=Aquifex aeolicus (strain VF5) GN=tmk PE=1
SV=1
Length = 195
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 30/195 (15%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
I FEG D SGKTTQAKKL +YL + P T G ++ E L + EL ++
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGT-KVGEVLREILLTE-ELDERT 59
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
LLF A+R +KLIE+ I ++ D+ DR+ S +A+ +
Sbjct: 60 ELLLFEASR-------SKLIEEKIIPDLKR---------DKVVILDRFVLSTIAYQGYGK 103
Query: 130 GMDISWCFQ----PEKGLPKPDAVLLFKLNEE-ALQRRKGFGDERYEQTDFQRKVAENYE 184
G+D+ + +G+ KPD LL + + AL+R K R+E +F KV + +
Sbjct: 104 GLDVEFIKNLNEFATRGV-KPDITLLLDIPVDIALRRLK--EKNRFENKEFLEKVRKGFL 160
Query: 185 KL---KDNIWIDIDA 196
+L ++N+ + IDA
Sbjct: 161 ELAKEEENVVV-IDA 174
>sp|B6YSZ4|KTHY_THEON Probable thymidylate kinase OS=Thermococcus onnurineus (strain NA1)
GN=tmk PE=3 SV=1
Length = 205
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 45/199 (22%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDY---------LNKNNIPSQFVNFPDRTISTG---HIIDE 57
FIV EG D +GK+TQA+ L ++ L K + F R + TG IID
Sbjct: 2 FIVIEGIDGAGKSTQARLLAEWFKKKGYDVVLTKEPTDTAFGKLIRRLVLTGGKEGIID- 60
Query: 58 YLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRY 117
+ +A LLF+A+R E L K SL+ K +DRY
Sbjct: 61 ----GARISHEAEALLFAADRAEHVHKLIK------------PSLKTGKI----VISDRY 100
Query: 118 SFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL-NEEALQRRKGFGDERYEQTDF- 175
+S +A+ A+ G+D+ W + +PD V+L L +E+++R G R +T+F
Sbjct: 101 FYSSLAYQWAR-GLDLEWLIDLNRFAVRPDLVILLDLPVKESMKRING----RSIKTEFD 155
Query: 176 -----QRKVAENYEKLKDN 189
Q+KV ENY KL +
Sbjct: 156 KIAELQKKVRENYLKLAER 174
>sp|C6A0S1|KTHY_THESM Probable thymidylate kinase OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=tmk PE=3 SV=1
Length = 210
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 31/193 (16%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDY---------LNKNNIPSQFVNFPDRTISTGHIIDEY 58
G FIV EG D +GK+TQAK L + L K + F R + G E
Sbjct: 2 GIFIVLEGIDGAGKSTQAKMLAKWFENRGYEVVLTKEPTDTAFGKLIRRLVLIGG--KEG 59
Query: 59 LRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYS 118
+ + +A LLF+A+R E + KLIE I + +DRY
Sbjct: 60 IIDGARISKEAEALLFAADRAEH---VKKLIEPSI-------------KAGKVVISDRYF 103
Query: 119 FSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL-NEEALQRRKG--FGDERYEQTDF 175
+S +A+ A+ G+D++W P+ D V+L L +E++ R G E + +
Sbjct: 104 YSSLAYQWAR-GLDLNWLINLNAFAPRADLVILLDLPVKESINRINGRSIRSEFDKIVEL 162
Query: 176 QRKVAENYEKLKD 188
Q+KV +NY KL +
Sbjct: 163 QKKVRKNYLKLAE 175
>sp|P0C8G1|KTHY_ASFP4 Thymidylate kinase OS=African swine fever virus (isolate Tick/South
Africa/Pretoriuskop Pr4/1996) GN=TMK PE=3 SV=1
Length = 239
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RG I EG +R GK+TQA +L L + + + FP+ +TG +I + L K IE+
Sbjct: 2 RGILIAIEGVNRVGKSTQAMRLKKALECMDYNAVCIRFPNPDTTTGDLILQVLNKMIEMS 61
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
+ H LF+ + E + L++ + + DRY +SG+A++
Sbjct: 62 SEQLHKLFTKHCSEFVAEIAALLKLNFIVIV-----------------DRYIWSGLAYAQ 104
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFK----LNEEALQRRKGFGDERYEQTDF 175
A +G+ I K + KPD LNE+ L ++ F + ++T F
Sbjct: 105 A-DGITIE-----TKNIFKPDYTFFLSSKKPLNEKPLTLQRLFETKEKQETIF 151
>sp|A5GQJ8|KTHY_SYNR3 Thymidylate kinase OS=Synechococcus sp. (strain RCC307) GN=tmk PE=3
SV=1
Length = 212
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 32/225 (14%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RG F+V EG D GKTTQ K L D+L + + G + + LR+ + P
Sbjct: 2 RGRFLVLEGIDGCGKTTQLKALADWLPASGLMPSGAQLITTREPGGTALGQALRQLLLHP 61
Query: 67 DQ-------AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSF 119
+ A LL++A+R + + + LE +DRY
Sbjct: 62 PEEQAPATRAELLLYAADRAQH----------------VQTRLEPALAAGDWVLSDRYCG 105
Query: 120 SGVAFSAAKEGMDISWCFQPEK----GLPKPDAVLLFKLNEE-ALQRRKGFGDERYEQTD 174
S A+ G+D+ Q E+ GL +PD L +L+ E A QRR G +R E
Sbjct: 106 STAAYQGYGRGLDLDLITQLEQLATAGL-QPDLCLWLELSPELAAQRRSGQQQDRIEAEG 164
Query: 175 --FQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIK 216
F +V + + +L +W +DA + + V+ +V + ++
Sbjct: 165 LAFLARVHQGFAELSQRPLWRRVDASLPPEQVHQQVQHLVREGLE 209
>sp|Q2NHE3|KTHY_METST Probable thymidylate kinase OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=tmk PE=3 SV=1
Length = 195
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 24/181 (13%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD-- 67
+IV EG D GKTTQ +KL ++L K + + P + G II E L K D
Sbjct: 2 YIVLEGIDGVGKTTQTEKLKEWLEKRGFSVKTIVEPTDS-DIGKIIREELLKPEATSDTN 60
Query: 68 -QAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
Q LLF+A+R +TL+ + ++N N + +DR +S + +
Sbjct: 61 QQMLALLFAADR--------------LTLKDEINQVKN--NQQKILISDRSFYSSITYQN 104
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNE-EALQRRKGFGDERYEQTDFQRKVAENYEK 185
+ ++ W ++ K P+PD ++ ++E EAL+R + +E +F K ENY K
Sbjct: 105 ST-TIEPEWIYKINKHTPRPDLTIILDIDEDEALKRCDKI--DTFENKEFLEKTRENYLK 161
Query: 186 L 186
L
Sbjct: 162 L 162
>sp|A4J0K6|KTHY_DESRM Thymidylate kinase OS=Desulfotomaculum reducens (strain MI-1)
GN=tmk PE=3 SV=1
Length = 207
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 33/208 (15%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK--IELPD 67
FIVFEG D SGK+TQ L YL++ I + P T G I E L E+ D
Sbjct: 5 FIVFEGVDGSGKSTQLNLLNKYLSQKEIKTICTREPGGT-PVGEKIRELLLDPNFAEIQD 63
Query: 68 QAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCT--NDRYSFSGVAFS 125
+ LL+SA R +L+ Q I L+QG DRY S +A+
Sbjct: 64 RTEALLYSAAR-------AQLVAQVI-----------RPQLEQGTVVLCDRYIDSTLAYQ 105
Query: 126 AAKEGMDISWCFQPEK---GLPKPDAVLLFKL-NEEALQR-RKGFGDERY--EQTDFQRK 178
GMDIS+ Q + G P+ +L L EE LQR RK +R E F K
Sbjct: 106 GYGRGMDISFLAQINELASGGLMPNITILLDLPPEEGLQRSRKDRPADRLENESLTFYHK 165
Query: 179 VAENY---EKLKDNIWIDIDADKDIDTL 203
V Y K K + ++ +DA + ++ L
Sbjct: 166 VRSGYLEMAKRKPDTYLVLDARQTMEQL 193
>sp|Q8F7Y6|KTHY_LEPIN Thymidylate kinase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=tmk
PE=3 SV=2
Length = 204
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 29/215 (13%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
F+VFEG D SGK+T K L + L + IPS P + TG + ++LR +IEL +
Sbjct: 8 FVVFEGIDGSGKSTLCKSLTEKLIELGIPSAAFTEPT-NLETGKYLRKFLRGEIELGKEE 66
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
F +R E ++Q I + N D+ DRY +S A+ +
Sbjct: 67 QIEAFLNDREES-------LKQNILPAL---------NSDKNVLLDRYMYSTAAYQS--- 107
Query: 130 GMDISWCFQPEKGLPK----PDAVLLFKLNE----EALQRRKGFGDERYEQTDFQRKVAE 181
G D+S +K L + PD + L+ E L RRK G ER+E K+
Sbjct: 108 GDDLSPEMILKKNLNRNFKIPDLLFYLDLSPSIALERLNRRKE-GKERFETLAQLEKIRS 166
Query: 182 NYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216
YEK+ I ID +K+ + + +I + IK
Sbjct: 167 AYEKILPKDTIRIDGNKNQNQIVQECLEIFLTNIK 201
>sp|Q72NL9|KTHY_LEPIC Thymidylate kinase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=tmk PE=3 SV=1
Length = 204
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 29/215 (13%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
F+VFEG D SGK+T K L + L + IPS P + TG + ++LR +IEL +
Sbjct: 8 FVVFEGIDGSGKSTLCKSLTEKLIELGIPSAAFTEPT-NLETGKYLRKFLRGEIELGKEE 66
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
F +R E ++Q I + N D+ DRY +S A+ +
Sbjct: 67 QIEAFLNDREES-------LKQNILPAL---------NSDKNVLLDRYMYSTAAYQS--- 107
Query: 130 GMDISWCFQPEKGLPK----PDAVLLFKLNE----EALQRRKGFGDERYEQTDFQRKVAE 181
G D+S +K L + PD + L+ E L RRK G ER+E K+
Sbjct: 108 GDDLSPEMILKKNLNRNFKIPDLLFYLDLSPSIALERLNRRKE-GKERFETLAQLEKIRS 166
Query: 182 NYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216
YEK+ I ID +K+ + + +I + IK
Sbjct: 167 AYEKILPKDTIRIDGNKNQNQIVQECLEIFLTNIK 201
>sp|O83373|KTHY_TREPA Putative thymidylate kinase OS=Treponema pallidum (strain Nichols)
GN=tmk PE=3 SV=1
Length = 208
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 45/213 (21%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
F+VFEG D +G +TQ + L + F P G +I + L+K++ + +A
Sbjct: 7 FVVFEGIDGTGTSTQLRALERHFQARK-DMVFTQEPTGG-EIGTLIRDVLQKRVIMSSKA 64
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTN------DRYSFSGVA 123
LLF+A+R H LE ++ DRY FS +
Sbjct: 65 LGLLFAADR--------------------HEHLEGAGGINDCLAEGKIVLCDRYVFSSLV 104
Query: 124 FSAAKEGMDISWCFQPE--KGLPKPDAVLLFKLNEEALQRR---KGFGDERYEQTDFQRK 178
+ +GM +S F E K P P+ V F E R +G E YE T FQ K
Sbjct: 105 Y----QGMAVSGSFAYELNKEFPLPEVVFYFDAPIEVCVERITARGLQTELYEYTSFQEK 160
Query: 179 VAENYEKLKDNI--------WIDIDADKDIDTL 203
+ YE + I+IDA ++I+ +
Sbjct: 161 ARKGYETIFRKCRHLYPAMKVIEIDAREEIEVV 193
>sp|Q7V4G2|KTHY_PROMM Thymidylate kinase OS=Prochlorococcus marinus (strain MIT 9313)
GN=tmk PE=3 SV=1
Length = 216
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 39/235 (16%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD 67
G F+V EG D GKTTQ + L ++L ++ + + G + LRK + P
Sbjct: 3 GRFLVLEGIDGCGKTTQLRHLANWLPRSGLMPEGARLHLTREPGGTALGIALRKLVLHPP 62
Query: 68 QAAH-------LLFSANRWEREPTLTK-LIEQGITLEIMHSSLENEKNLDQGCTNDRYSF 119
A LL++A+R + L + +EQG +DR+S
Sbjct: 63 GDASPEPLAELLLYAADRAQHVAQLIRPALEQG-----------------HWVLSDRFSG 105
Query: 120 SGVAFSAAKEGMDISWCFQPEK----GLPKPDAVLLFKLN-EEALQRRKGFGDERYEQ-- 172
S +A+ +D+ Q E+ GL PD +L EE+L RR ++R E
Sbjct: 106 STLAYQGYGRELDLDLIQQLEQIATAGL-VPDLTFWLELPVEESLLRRDARSNDRIEAEG 164
Query: 173 TDFQRKVAENYEKL-KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLESN 226
DF +VA + L ++ W+ + AD+ ++++ +++ K F PL+ +
Sbjct: 165 VDFLTRVATGFAVLARERSWVPLQADQQVESV-----SSALESQLKHHFGPLQES 214
>sp|Q3AG12|KTHY_CARHZ Thymidylate kinase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=tmk PE=3 SV=1
Length = 203
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 32/204 (15%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RG FI EG + SGKTTQ + + YL + NIP P T I + L +
Sbjct: 2 RGKFITIEGVEGSGKTTQIQYIARYLTEKNIPHIITREPGGTALGKKIRELLLNPSYPVV 61
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG--CTNDRYSFSGVAF 124
+A LL+ A+R + H + +LD+G +DRY S +A+
Sbjct: 62 PEAEILLYLADRAQ------------------HVGEKIIPHLDKGVWVISDRYFDSTLAY 103
Query: 125 SAAKEGMDI----SWCFQPEKGLPKPDAVLLFKLNEE-ALQRRKGFGD----ERYEQTDF 175
G D+ S+ KGL PD +L L E L R KG G+ ER E +F
Sbjct: 104 QGYGRGFDLTLLKSFIAFATKGL-IPDLTVLIDLPPEVGLSRVKGRGEYDRLER-ETLEF 161
Query: 176 QRKVAENYEKL-KDNIWIDIDADK 198
++V E + +L +D + +D K
Sbjct: 162 HQRVREGFLQLARDQRFRVVDGRK 185
>sp|A2CD19|KTHY_PROM3 Thymidylate kinase OS=Prochlorococcus marinus (strain MIT 9303)
GN=tmk PE=3 SV=1
Length = 216
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 39/235 (16%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD 67
G +V EG D GKTTQ + L ++L ++ + + G + LRK + P
Sbjct: 3 GRLLVLEGIDGCGKTTQLRHLANWLPRSGLMPEGARLHLTREPGGTALGMALRKLVLHPP 62
Query: 68 QAAH-------LLFSANRWEREPTLTK-LIEQGITLEIMHSSLENEKNLDQGCTNDRYSF 119
A LL++A+R + L + +EQG +DR+S
Sbjct: 63 GDASPEPLAELLLYAADRAQHVAQLIRPALEQG-----------------HWVLSDRFSG 105
Query: 120 SGVAFSAAKEGMDISWCFQPEK----GLPKPDAVLLFKLN-EEALQRRKGFGDERYEQ-- 172
S +A+ +D+ Q E+ GL PD +L+ EE+L RR ++R E
Sbjct: 106 STLAYQGYGRELDLDLIQQLEQIATAGL-VPDLTFWLELSVEESLVRRDARSNDRIEAEG 164
Query: 173 TDFQRKVAENYEKL-KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLESN 226
DF +VA + L ++ W+ + AD+ ++++ +++ K F PL+ +
Sbjct: 165 VDFLTRVATGFAVLARERSWVPLQADQQVESV-----SSALESQLKHHFGPLQES 214
>sp|A6UTV9|KTHY_META3 Probable thymidylate kinase OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=tmk PE=3 SV=1
Length = 196
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
FIVFEG D SGKTTQAK L DYLN + P G +I + L K ++
Sbjct: 4 FIVFEGIDGSGKTTQAKLLADYLN-----GIYTCEPTNG-EIGQLIRKVLGGK-NCEKES 56
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
LLF+ +R E EI H +EN DRY +S + + + +
Sbjct: 57 LALLFAGDRVEH------------IKEIEHKLIENM------VICDRYVYSSMVYQSI-Q 97
Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD--ERYEQTDFQRKVAENY 183
G+DI + + PD ++ ++ E +R G D E +E + +KV + Y
Sbjct: 98 GIDIDFIASINRFAKIPDVLIYLDVSIEESLKRMGDRDSKEIFENKEILQKVNKKY 153
>sp|Q5SHX3|KTHY_THET8 Thymidylate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634
/ DSM 579) GN=tmk PE=3 SV=1
Length = 198
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD 67
G F+ EG D SGKTTQA++L +L P P + + L + EL
Sbjct: 3 GLFLTLEGLDGSGKTTQARRLAAFLEAQGRPVLLTREPGGGLPE---VRSLLLTQ-ELSP 58
Query: 68 QAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA 127
+A +LLFSA+R E + K+I G+ + +DRY S +A+
Sbjct: 59 EAEYLLFSADRAEH---VRKVILPGLA-------------AGKVVISDRYLDSSLAYQGY 102
Query: 128 KEGMDISW----CFQPEKGLPKPDAVLLFKLNEEALQRR-------KGFGDERYEQTDFQ 176
G+ + W + +GL KP L L EA RR +G G E F
Sbjct: 103 GRGLPLPWLREVAREATRGL-KPRLTFLLDLPPEAALRRVRRPDRLEGLGLE------FF 155
Query: 177 RKVAENYEKL 186
R+V E Y L
Sbjct: 156 RRVREGYLAL 165
>sp|Q72I89|KTHY_THET2 Thymidylate kinase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=tmk PE=3 SV=1
Length = 198
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD 67
G F+ EG D SGKTTQA++L +L P P + + L + EL
Sbjct: 3 GLFLTLEGLDGSGKTTQARRLAAFLEAQGRPVLLTREPGGGLPE---VRSLLLTQ-ELSP 58
Query: 68 QAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA 127
+A +LLFSA+R E + K+I G+ + +DRY S +A+
Sbjct: 59 EAEYLLFSADRAEH---VRKVILPGLA-------------AGKVVISDRYLDSSLAYQGY 102
Query: 128 KEGMDISW----CFQPEKGLPKPDAVLLFKLNEEALQRR-------KGFGDERYEQTDFQ 176
G+ + W + +GL KP L L EA RR +G G E F
Sbjct: 103 GRGLPLPWLREVAREATRGL-KPRLTFLLDLPPEAALRRVRRPDRLEGLGLE------FF 155
Query: 177 RKVAENYEKL 186
R+V E Y L
Sbjct: 156 RRVREGYLAL 165
>sp|P0C8G2|KTHY_ASFWA Thymidylate kinase OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=TMK PE=3 SV=1
Length = 239
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RG I EG + GK+TQA +L L + + + FP+ +TG +I + L K IE+
Sbjct: 2 RGILIAIEGINGVGKSTQAMRLKKALECMDYNAVCIRFPNPDTTTGDLILQVLNKMIEMS 61
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
+ H LF+ + E + L++ + + DRY +SG+A++
Sbjct: 62 SEQLHKLFTKHCSEFVAEIAALLKLNFIVIV-----------------DRYIWSGLAYAQ 104
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFK----LNEEALQRRKGFGDERYEQTDF 175
A +G+ I K KPD LNE+ L ++ F + ++T F
Sbjct: 105 A-DGITIE-----TKNTFKPDYTFFLSSKKPLNEKPLTLQRLFETKEKQETIF 151
>sp|Q7NRQ7|KTHY_CHRVO Thymidylate kinase OS=Chromobacterium violaceum (strain ATCC 12472
/ DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=tmk PE=3 SV=1
Length = 212
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
M+S++ RG FI EG D +GK+T + D+L ++ + + F P G + E +R
Sbjct: 1 MSSEVRRGRFITLEGIDGAGKSTHLSFIRDWLARHGVDAAFTREPG-----GTPLSEKIR 55
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
+ P A L + E L Q E++ +L + L +DR++ S
Sbjct: 56 DLLLDPGTVASL-------DAEALLAFAARQQHIAEVIEPALAAGRWL----VSDRFTDS 104
Query: 121 GVAFSAAKEGMDIS-------WCFQPEKGLPKPDAVLLFKL-NEEALQRRKGFG-DERYE 171
AF G+ W ++GL +PD LLF L E A R G +R+E
Sbjct: 105 TYAFQGGGRGVPFERIRALEDWV---QRGL-QPDLTLLFDLPTEVAAGRMAGTRVPDRFE 160
Query: 172 Q--TDFQRKVAENY 183
Q DF R+V Y
Sbjct: 161 QEAADFHRRVRAAY 174
>sp|Q04YY2|KTHY_LEPBL Thymidylate kinase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=tmk PE=3 SV=1
Length = 205
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 94/209 (44%), Gaps = 31/209 (14%)
Query: 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT-ISTGHIIDEYLRKK 62
+I + F+VFEG D SGK+T K L + L + IPS VNF + T TG + ++LR +
Sbjct: 2 KIEKPIFVVFEGIDGSGKSTLCKSLTEKLTERGIPS--VNFTEPTNFETGKYLRKFLRGE 59
Query: 63 IELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV 122
I+L + F +R E + Q I SLE+ KN+ DRY +S
Sbjct: 60 IDLERKEQIDAFLNDREES-------LRQNIL-----PSLESGKNV----LLDRYMYSTA 103
Query: 123 AFSAAKEGMDISWCFQPEKGLPK----PDAVLLFKLNE----EALQRRKGFGDERYEQTD 174
A+ + G D+ EK L K PD + LN E L +RK ER+E
Sbjct: 104 AYQS---GDDLLPETIIEKNLKKNFKIPDLLFYLDLNPAIALERLSQRKE-NKERFETLA 159
Query: 175 FQRKVAENYEKLKDNIWIDIDADKDIDTL 203
K+ Y ++ I ID K D +
Sbjct: 160 QLEKIRSAYNRILPKETIRIDGVKGPDEI 188
>sp|Q04UJ2|KTHY_LEPBJ Thymidylate kinase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=tmk PE=3 SV=1
Length = 205
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 94/209 (44%), Gaps = 31/209 (14%)
Query: 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT-ISTGHIIDEYLRKK 62
+I + F+VFEG D SGK+T K L + L + IPS VNF + T TG + ++LR +
Sbjct: 2 KIEKPIFVVFEGIDGSGKSTLCKSLTEKLTERGIPS--VNFTEPTNFETGKYLRKFLRGE 59
Query: 63 IELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV 122
I+L + F +R E + Q I SLE+ KN+ DRY +S
Sbjct: 60 IDLERKEQIDAFLNDREES-------LRQNIL-----PSLESGKNV----LLDRYMYSTA 103
Query: 123 AFSAAKEGMDISWCFQPEKGLPK----PDAVLLFKLNE----EALQRRKGFGDERYEQTD 174
A+ + G D+ EK L K PD + LN E L +RK ER+E
Sbjct: 104 AYQS---GDDLLPETIIEKNLKKNFKIPDLLFYLDLNPAIALERLSQRKE-NKERFETLA 159
Query: 175 FQRKVAENYEKLKDNIWIDIDADKDIDTL 203
K+ Y ++ I ID K D +
Sbjct: 160 QLEKIRSAYNRILPKETIRIDGVKGPDEI 188
>sp|Q3AH20|KTHY_SYNSC Thymidylate kinase OS=Synechococcus sp. (strain CC9605) GN=tmk PE=3
SV=1
Length = 209
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 34/212 (16%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVNFPDR---TISTGHIIDEYLRKKI 63
G FIV EG D GKTTQ + L+++L N +P R G I E L
Sbjct: 3 GRFIVLEGIDGCGKTTQIQHLLEWLPNSGLMPKGAAVVCTREPGGTPLGRSIRELLLHTS 62
Query: 64 --ELPDQAAHL-LFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG--CTNDRYS 118
E P A L L++A+R + TL + L++G +DR+S
Sbjct: 63 DQEAPAPTAELMLYAADRAQHVETLIR------------------PALERGDWVISDRFS 104
Query: 119 FSGVAFSAAKEGMD---ISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDERYEQ-- 172
S +A+ G+D I Q +PD L +L+ +E+LQRR G ++R E
Sbjct: 105 GSTLAYQGYGRGLDRDLIQRLEQIATAGLQPDITLWLRLSVQESLQRRLGDKEDRIEAEG 164
Query: 173 TDFQRKVAENYEKLKDN-IWIDIDADKDIDTL 203
F +VA+ + +L ++ W + AD+ +
Sbjct: 165 AAFLERVAQGFAQLAEHRSWCAVAADQSASAV 196
>sp|O27793|KTHY_METTH Probable thymidylate kinase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tmk PE=3 SV=1
Length = 194
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 40/209 (19%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD-- 67
+I FEG D SGKTT A +L +N V P T I +R + PD
Sbjct: 2 YICFEGIDGSGKTTHAALTASWLRENGYMVHEVREP-----TDSNIGSLIRSMLSSPDAR 56
Query: 68 -----QAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV 122
+ LLF+A+R TL IE +++ S DR +S +
Sbjct: 57 TPDVQRMLALLFAADRL----TLRSKIEGDWAEDVVVS--------------DRCYYSSM 98
Query: 123 AFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAEN 182
+ +E W + + P+PD V+L ++ E R G DE +E + V E
Sbjct: 99 VYQGPEE-----WVCEINRFAPRPDVVILLDIDVEVAMERCGGTDE-FEDPLYLAGVRER 152
Query: 183 YEKLKD-NIWIDIDADKDIDTLGLIVKDI 210
Y +L D N + ++A++ ++ LI +DI
Sbjct: 153 YLELADKNGFYTVNAERGVN---LIQRDI 178
>sp|P0C8F9|KTHY_ASFK5 Thymidylate kinase OS=African swine fever virus (isolate
Pig/Kenya/KEN-50/1950) GN=TMK PE=3 SV=1
Length = 235
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RG I EG + K+TQA +L + L +++FP TG +I + L K +++P
Sbjct: 2 RGILIAIEGINGVEKSTQAIRLKNALENKRYDVIYLHFPSPNTDTGKLILDVLNKIVKMP 61
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
+ H LF+ +R E + L++ L+ DRY +SG+A++
Sbjct: 62 SEQLHELFTKHRCEFTAEIAALLK-----------------LNYIVIVDRYIWSGLAYAQ 104
Query: 127 AKEGM-DISWCFQPEKG-LPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQR 177
A M D F P+ P+ LNE+ L ++ + E ++ F +
Sbjct: 105 ADRIMIDTKNTFNPDYTFFLSPNK----SLNEKPLHLQRLYETEEKQEIIFTQ 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,784,449
Number of Sequences: 539616
Number of extensions: 3836619
Number of successful extensions: 13505
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 224
Number of HSP's that attempted gapping in prelim test: 13229
Number of HSP's gapped (non-prelim): 392
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)