Query psy16874
Match_columns 227
No_of_seqs 117 out of 1271
Neff 9.3
Searched_HMMs 46136
Date Sat Aug 17 00:18:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02924 thymidylate kinase 100.0 1.1E-34 2.4E-39 230.8 23.7 194 5-216 13-206 (220)
2 COG0125 Tmk Thymidylate kinase 100.0 1.1E-34 2.4E-39 227.4 21.5 192 7-216 2-206 (208)
3 KOG3327|consensus 100.0 2.4E-33 5.2E-38 209.9 17.5 203 5-225 2-207 (208)
4 PRK13976 thymidylate kinase; P 100.0 3.2E-31 6.9E-36 209.4 22.3 190 9-218 1-206 (209)
5 PRK13973 thymidylate kinase; P 100.0 5.1E-31 1.1E-35 209.6 22.3 192 7-216 2-209 (213)
6 PRK07933 thymidylate kinase; V 100.0 7.4E-31 1.6E-35 208.3 19.9 186 9-211 1-211 (213)
7 PRK13974 thymidylate kinase; P 100.0 1.9E-28 4.2E-33 194.7 22.8 193 7-217 2-210 (212)
8 PF02223 Thymidylate_kin: Thym 100.0 2.2E-29 4.9E-34 196.3 14.8 177 13-207 1-186 (186)
9 PRK00698 tmk thymidylate kinas 100.0 5E-28 1.1E-32 191.2 21.1 191 7-215 2-204 (205)
10 TIGR00041 DTMP_kinase thymidyl 100.0 3.7E-27 7.9E-32 185.0 19.1 183 7-207 2-195 (195)
11 PRK13975 thymidylate kinase; P 99.9 1.7E-25 3.6E-30 175.7 20.4 183 8-216 2-193 (196)
12 cd01672 TMPK Thymidine monopho 99.9 4.2E-25 9E-30 173.4 22.2 186 9-212 1-199 (200)
13 cd02030 NDUO42 NADH:Ubiquinone 99.9 5.1E-23 1.1E-27 164.3 14.0 180 10-208 1-216 (219)
14 PRK13808 adenylate kinase; Pro 99.9 1E-20 2.2E-25 157.6 14.3 173 10-217 2-197 (333)
15 KOG3079|consensus 99.9 4.9E-21 1.1E-25 144.1 10.7 172 5-213 5-193 (195)
16 PRK14532 adenylate kinase; Pro 99.9 8.8E-21 1.9E-25 148.0 12.5 169 10-212 2-186 (188)
17 PLN02674 adenylate kinase 99.9 9.9E-21 2.1E-25 152.0 12.4 172 6-211 29-243 (244)
18 TIGR01359 UMP_CMP_kin_fam UMP- 99.8 1.5E-20 3.3E-25 146.0 12.3 167 10-211 1-182 (183)
19 PLN02200 adenylate kinase fami 99.8 3E-20 6.5E-25 149.4 14.1 177 6-219 41-230 (234)
20 PRK14531 adenylate kinase; Pro 99.8 6.7E-20 1.5E-24 142.5 13.8 167 10-211 4-182 (183)
21 cd01673 dNK Deoxyribonucleosid 99.8 4.7E-20 1E-24 144.5 12.9 166 10-198 1-186 (193)
22 PRK02496 adk adenylate kinase; 99.8 7.1E-20 1.5E-24 142.5 12.0 169 9-211 2-182 (184)
23 PRK14529 adenylate kinase; Pro 99.8 2.7E-19 5.9E-24 142.1 15.1 167 10-211 2-222 (223)
24 PRK14527 adenylate kinase; Pro 99.8 3.3E-19 7.2E-24 139.5 15.3 174 1-211 1-190 (191)
25 PLN02459 probable adenylate ki 99.8 3.1E-19 6.6E-24 144.1 13.1 170 8-213 29-251 (261)
26 PRK14528 adenylate kinase; Pro 99.8 7.5E-19 1.6E-23 136.9 12.9 168 9-210 2-185 (186)
27 PRK00279 adk adenylate kinase; 99.8 1E-18 2.2E-23 139.2 13.1 170 10-213 2-214 (215)
28 TIGR01360 aden_kin_iso1 adenyl 99.8 2.3E-18 4.9E-23 134.1 13.2 170 8-213 3-187 (188)
29 PRK14526 adenylate kinase; Pro 99.8 3.3E-18 7.1E-23 135.4 12.2 166 10-213 2-209 (211)
30 TIGR01351 adk adenylate kinase 99.8 9.5E-18 2.1E-22 133.2 14.0 165 11-211 2-209 (210)
31 PTZ00088 adenylate kinase 1; P 99.8 6.3E-18 1.4E-22 135.3 12.6 125 6-166 4-130 (229)
32 COG1428 Deoxynucleoside kinase 99.8 1.8E-17 4E-22 128.0 14.1 181 7-217 3-212 (216)
33 PLN02842 nucleotide kinase 99.8 8.7E-18 1.9E-22 146.5 13.4 172 12-219 1-208 (505)
34 PHA03132 thymidine kinase; Pro 99.8 2.8E-17 6.1E-22 145.3 16.6 162 7-188 256-447 (580)
35 PRK14530 adenylate kinase; Pro 99.7 4.9E-17 1.1E-21 129.6 13.8 163 9-213 4-213 (215)
36 cd01428 ADK Adenylate kinase ( 99.7 5.4E-17 1.2E-21 127.0 9.5 123 11-167 2-126 (194)
37 COG0563 Adk Adenylate kinase a 99.7 1.7E-16 3.7E-21 122.3 12.0 169 9-211 1-177 (178)
38 COG0703 AroK Shikimate kinase 99.7 5E-16 1.1E-20 117.4 10.8 158 9-215 3-170 (172)
39 PRK03731 aroL shikimate kinase 99.6 1.8E-15 3.9E-20 116.2 10.4 155 10-213 4-170 (171)
40 TIGR03574 selen_PSTK L-seryl-t 99.6 4.5E-15 9.7E-20 120.8 12.7 164 10-215 1-171 (249)
41 PRK06762 hypothetical protein; 99.6 2.3E-14 5E-19 109.5 15.4 160 8-212 2-163 (166)
42 PRK13948 shikimate kinase; Pro 99.6 6.9E-15 1.5E-19 113.8 11.9 164 6-215 8-177 (182)
43 PRK08233 hypothetical protein; 99.6 3.8E-14 8.2E-19 109.7 15.8 161 7-213 2-177 (182)
44 PF00406 ADK: Adenylate kinase 99.6 2.1E-16 4.5E-21 119.1 2.7 119 13-165 1-122 (151)
45 KOG3877|consensus 99.6 3.5E-14 7.6E-19 113.4 15.2 186 7-209 70-293 (393)
46 PRK13946 shikimate kinase; Pro 99.6 2.3E-14 5E-19 111.5 13.7 164 8-217 10-180 (184)
47 PRK13947 shikimate kinase; Pro 99.6 2.6E-14 5.6E-19 109.7 13.6 155 10-210 3-164 (171)
48 COG1102 Cmk Cytidylate kinase 99.6 1.8E-14 4E-19 106.6 11.5 157 9-215 1-174 (179)
49 PRK00131 aroK shikimate kinase 99.6 1.4E-14 3E-19 111.3 10.9 164 6-214 2-172 (175)
50 PRK14738 gmk guanylate kinase; 99.6 4.2E-14 9.2E-19 111.9 13.6 172 5-215 10-196 (206)
51 COG3265 GntK Gluconate kinase 99.6 6.4E-14 1.4E-18 102.2 12.4 157 14-213 1-159 (161)
52 PRK05057 aroK shikimate kinase 99.6 5.5E-14 1.2E-18 108.1 12.8 157 7-212 3-170 (172)
53 PRK03839 putative kinase; Prov 99.6 4.6E-14 1E-18 109.3 11.9 69 145-213 79-153 (180)
54 PRK05541 adenylylsulfate kinas 99.6 4.8E-14 1.1E-18 108.8 11.9 160 6-214 5-173 (176)
55 PRK13949 shikimate kinase; Pro 99.6 3.8E-14 8.3E-19 108.6 11.1 155 10-210 3-168 (169)
56 COG0529 CysC Adenylylsulfate k 99.6 3E-14 6.4E-19 107.1 9.2 162 6-212 21-190 (197)
57 COG1936 Predicted nucleotide k 99.5 1.8E-14 3.8E-19 108.1 7.8 67 145-213 82-156 (180)
58 COG0283 Cmk Cytidylate kinase 99.5 4.4E-14 9.5E-19 109.6 10.1 178 8-214 4-220 (222)
59 TIGR01313 therm_gnt_kin carboh 99.5 2.3E-13 5E-18 103.7 13.2 65 147-211 95-161 (163)
60 KOG3354|consensus 99.5 4.7E-13 1E-17 98.3 13.5 163 10-212 14-187 (191)
61 COG4088 Predicted nucleotide k 99.5 2.5E-13 5.4E-18 104.5 12.6 163 9-212 2-172 (261)
62 PRK04040 adenylate kinase; Pro 99.5 1.3E-12 2.8E-17 101.8 16.1 67 145-211 110-187 (188)
63 PRK00081 coaE dephospho-CoA ki 99.5 2.6E-13 5.6E-18 106.4 12.2 68 145-213 124-193 (194)
64 PRK00625 shikimate kinase; Pro 99.5 2.6E-13 5.6E-18 104.3 11.2 33 9-41 1-33 (173)
65 PRK09825 idnK D-gluconate kina 99.5 9.3E-13 2E-17 101.6 13.8 73 145-217 98-172 (176)
66 PLN02199 shikimate kinase 99.5 4.8E-13 1E-17 109.5 12.8 164 7-217 101-292 (303)
67 PRK08154 anaerobic benzoate ca 99.5 3.4E-13 7.5E-18 113.0 11.6 167 5-217 130-305 (309)
68 PRK10078 ribose 1,5-bisphospho 99.5 8.4E-13 1.8E-17 102.8 11.9 166 8-212 2-175 (186)
69 cd00227 CPT Chloramphenicol (C 99.4 2.7E-12 5.8E-17 99.0 12.7 167 8-211 2-174 (175)
70 PRK06217 hypothetical protein; 99.4 2.9E-12 6.2E-17 99.6 12.9 149 9-213 2-179 (183)
71 PRK01184 hypothetical protein; 99.4 9.2E-12 2E-16 96.7 15.7 72 145-216 103-181 (184)
72 PRK14021 bifunctional shikimat 99.4 1.2E-12 2.5E-17 117.4 11.4 162 6-213 4-176 (542)
73 PRK14730 coaE dephospho-CoA ki 99.4 4.1E-12 9E-17 99.6 12.8 167 9-211 2-192 (195)
74 COG0194 Gmk Guanylate kinase [ 99.4 1.6E-12 3.5E-17 98.9 9.7 166 6-212 2-181 (191)
75 PRK13477 bifunctional pantoate 99.4 6.8E-12 1.5E-16 110.7 14.9 35 7-41 283-317 (512)
76 PRK08356 hypothetical protein; 99.4 1.7E-11 3.6E-16 96.2 15.5 68 147-214 116-193 (195)
77 TIGR02322 phosphon_PhnN phosph 99.4 2.1E-12 4.5E-17 99.9 10.1 64 147-212 112-177 (179)
78 PRK14731 coaE dephospho-CoA ki 99.4 8.3E-12 1.8E-16 98.9 13.7 70 145-215 133-204 (208)
79 PRK14737 gmk guanylate kinase; 99.4 7.3E-12 1.6E-16 97.4 13.0 169 6-212 2-183 (186)
80 PRK13951 bifunctional shikimat 99.4 1.8E-12 3.9E-17 114.5 10.6 150 9-207 1-155 (488)
81 PRK04182 cytidylate kinase; Pr 99.4 2.7E-12 5.8E-17 99.1 10.3 71 146-216 92-176 (180)
82 PLN02422 dephospho-CoA kinase 99.4 4.4E-12 9.6E-17 101.4 11.7 70 145-215 125-196 (232)
83 KOG3078|consensus 99.4 3E-12 6.5E-17 101.3 10.3 173 7-217 14-228 (235)
84 PRK11545 gntK gluconate kinase 99.4 4.4E-12 9.6E-17 96.7 11.0 69 145-213 90-160 (163)
85 PRK00300 gmk guanylate kinase; 99.4 2.8E-11 6E-16 95.6 15.8 171 5-214 2-185 (205)
86 PRK14734 coaE dephospho-CoA ki 99.4 8.5E-12 1.8E-16 98.2 12.7 71 145-216 125-197 (200)
87 PRK14733 coaE dephospho-CoA ki 99.4 7.6E-12 1.7E-16 98.3 11.4 69 145-214 128-199 (204)
88 KOG3347|consensus 99.4 5.8E-12 1.3E-16 92.1 9.3 147 8-211 7-164 (176)
89 PHA02530 pseT polynucleotide k 99.4 3.7E-12 8E-17 106.4 9.7 153 8-202 2-171 (300)
90 PTZ00451 dephospho-CoA kinase; 99.4 1.7E-11 3.7E-16 98.8 12.8 70 145-215 136-209 (244)
91 TIGR00455 apsK adenylylsulfate 99.3 1.6E-11 3.6E-16 95.3 12.1 162 6-210 16-183 (184)
92 PF01583 APS_kinase: Adenylyls 99.3 1.2E-11 2.6E-16 92.8 10.8 147 7-198 1-154 (156)
93 cd00464 SK Shikimate kinase (S 99.3 8.9E-12 1.9E-16 93.8 10.3 31 11-41 2-32 (154)
94 PF08433 KTI12: Chromatin asso 99.3 2.6E-11 5.7E-16 99.4 13.1 147 9-196 2-155 (270)
95 TIGR03263 guanyl_kin guanylate 99.3 1.3E-11 2.8E-16 95.5 10.6 167 8-212 1-179 (180)
96 PRK14732 coaE dephospho-CoA ki 99.3 1.9E-11 4.2E-16 95.8 11.2 72 145-217 121-194 (196)
97 COG2019 AdkA Archaeal adenylat 99.3 5.6E-11 1.2E-15 88.7 12.7 70 143-212 107-187 (189)
98 cd02021 GntK Gluconate kinase 99.3 1.9E-11 4.2E-16 91.7 10.5 51 145-195 97-149 (150)
99 TIGR02173 cyt_kin_arch cytidyl 99.3 2.9E-11 6.3E-16 92.5 10.5 31 9-39 1-31 (171)
100 TIGR03707 PPK2_P_aer polyphosp 99.3 6.3E-11 1.4E-15 94.4 12.6 150 6-199 29-206 (230)
101 COG3709 Uncharacterized compon 99.3 1.9E-11 4.1E-16 90.6 8.8 166 7-213 4-182 (192)
102 TIGR03708 poly_P_AMP_trns poly 99.3 5.9E-11 1.3E-15 104.0 13.3 167 6-216 38-235 (493)
103 COG0237 CoaE Dephospho-CoA kin 99.3 3.8E-11 8.3E-16 94.1 11.0 71 146-218 124-197 (201)
104 smart00072 GuKc Guanylate kina 99.3 9.7E-11 2.1E-15 91.1 12.3 167 8-213 2-182 (184)
105 TIGR03709 PPK2_rel_1 polyphosp 99.3 1.2E-10 2.7E-15 94.5 12.9 163 6-212 54-247 (264)
106 PRK00889 adenylylsulfate kinas 99.3 1.3E-10 2.7E-15 89.6 12.2 38 6-43 2-39 (175)
107 PRK05480 uridine/cytidine kina 99.3 7.7E-11 1.7E-15 93.4 11.2 28 6-33 4-31 (209)
108 TIGR00152 dephospho-CoA kinase 99.2 4.2E-11 9.2E-16 93.4 9.3 62 145-208 123-187 (188)
109 PF13671 AAA_33: AAA domain; P 99.2 5.5E-12 1.2E-16 93.7 4.1 115 10-167 1-119 (143)
110 PF01202 SKI: Shikimate kinase 99.2 5.7E-12 1.2E-16 95.6 3.3 147 17-212 1-158 (158)
111 PF03976 PPK2: Polyphosphate k 99.2 3E-12 6.5E-17 102.1 1.6 167 7-217 30-227 (228)
112 TIGR03575 selen_PSTK_euk L-ser 99.2 1.8E-10 3.8E-15 97.0 12.1 76 139-215 148-229 (340)
113 PRK09518 bifunctional cytidyla 99.2 8.2E-11 1.8E-15 108.9 10.8 85 130-219 144-237 (712)
114 PRK03846 adenylylsulfate kinas 99.2 2.3E-10 5E-15 90.0 11.7 39 5-43 21-59 (198)
115 PRK05506 bifunctional sulfate 99.2 2.8E-10 6.1E-15 104.1 13.6 165 6-213 458-628 (632)
116 PRK00023 cmk cytidylate kinase 99.2 3.6E-09 7.9E-14 84.8 18.2 35 7-41 3-37 (225)
117 PRK05537 bifunctional sulfate 99.2 4.1E-10 8.8E-15 101.3 13.6 166 6-213 390-562 (568)
118 KOG4235|consensus 99.2 3.2E-11 6.9E-16 92.0 5.5 59 142-200 150-220 (244)
119 KOG3220|consensus 99.2 4.6E-10 1E-14 86.1 11.4 167 9-213 2-194 (225)
120 TIGR00017 cmk cytidylate kinas 99.1 3.2E-10 6.9E-15 90.3 9.8 34 8-41 2-35 (217)
121 PRK12269 bifunctional cytidyla 99.1 5.6E-10 1.2E-14 104.1 12.1 73 142-214 203-286 (863)
122 PRK11860 bifunctional 3-phosph 99.1 1.3E-09 2.9E-14 100.1 14.4 77 130-213 563-655 (661)
123 PRK03333 coaE dephospho-CoA ki 99.1 1.1E-09 2.4E-14 94.7 13.0 72 145-217 123-196 (395)
124 PRK08118 topology modulation p 99.1 3.7E-10 7.9E-15 86.4 8.6 32 10-41 3-34 (167)
125 cd02022 DPCK Dephospho-coenzym 99.1 2.4E-10 5.3E-15 88.4 7.6 56 145-201 121-178 (179)
126 PRK12338 hypothetical protein; 99.1 1.9E-09 4.2E-14 89.7 13.3 181 6-216 2-207 (319)
127 cd02027 APSK Adenosine 5'-phos 99.1 2.5E-09 5.4E-14 80.3 12.4 34 10-43 1-34 (149)
128 cd02020 CMPK Cytidine monophos 99.1 2.1E-09 4.6E-14 80.0 11.7 31 10-40 1-31 (147)
129 PHA03136 thymidine kinase; Pro 99.1 3.3E-09 7.2E-14 89.5 14.0 174 9-188 37-236 (378)
130 PRK06696 uridine kinase; Valid 99.1 7.8E-10 1.7E-14 88.6 9.4 38 6-43 20-57 (223)
131 PF07931 CPT: Chloramphenicol 99.1 1.2E-09 2.7E-14 83.6 10.0 159 8-212 1-174 (174)
132 PF01121 CoaE: Dephospho-CoA k 99.1 2.9E-10 6.4E-15 87.8 6.5 56 145-202 122-180 (180)
133 PF00625 Guanylate_kin: Guanyl 99.0 2.6E-09 5.6E-14 82.9 10.5 167 7-213 1-182 (183)
134 TIGR03708 poly_P_AMP_trns poly 99.0 2.4E-09 5.1E-14 94.1 10.6 163 6-212 297-490 (493)
135 PRK07667 uridine kinase; Provi 99.0 8.9E-09 1.9E-13 80.6 12.7 39 7-45 16-54 (193)
136 TIGR00235 udk uridine kinase. 99.0 8.2E-09 1.8E-13 81.7 11.6 32 1-34 1-32 (207)
137 KOG0635|consensus 99.0 2.7E-09 5.8E-14 78.4 7.8 38 6-43 29-66 (207)
138 COG0572 Udk Uridine kinase [Nu 99.0 3.6E-09 7.8E-14 83.1 8.6 30 6-35 6-35 (218)
139 COG0645 Predicted kinase [Gene 99.0 3.1E-09 6.7E-14 79.8 7.6 146 8-188 1-148 (170)
140 PLN02772 guanylate kinase 98.9 1.8E-08 3.8E-13 86.0 12.9 168 7-212 134-317 (398)
141 PF13521 AAA_28: AAA domain; P 98.9 8.1E-09 1.8E-13 78.6 9.7 154 11-202 2-162 (163)
142 PRK06547 hypothetical protein; 98.9 6.7E-09 1.5E-13 79.8 9.2 38 6-43 13-50 (172)
143 PTZ00301 uridine kinase; Provi 98.9 7.3E-09 1.6E-13 82.0 9.0 27 8-34 3-29 (210)
144 PF01712 dNK: Deoxynucleoside 98.9 6.4E-10 1.4E-14 83.2 2.4 97 115-211 25-142 (146)
145 PRK06761 hypothetical protein; 98.9 1.3E-07 2.8E-12 77.8 16.0 38 8-45 3-40 (282)
146 PRK07261 topology modulation p 98.9 6.8E-09 1.5E-13 79.7 7.7 32 10-41 2-33 (171)
147 PRK05416 glmZ(sRNA)-inactivati 98.9 1.8E-07 3.9E-12 77.5 15.6 69 145-213 85-160 (288)
148 PRK12339 2-phosphoglycerate ki 98.9 1.4E-08 3E-13 79.6 8.5 28 7-34 2-29 (197)
149 cd02024 NRK1 Nicotinamide ribo 98.8 1.2E-08 2.6E-13 79.3 6.6 36 10-45 1-37 (187)
150 PRK08099 bifunctional DNA-bind 98.8 2.8E-07 6E-12 79.8 14.9 176 8-218 219-397 (399)
151 TIGR01663 PNK-3'Pase polynucle 98.8 9.5E-09 2.1E-13 91.3 5.8 131 6-195 367-506 (526)
152 PF13238 AAA_18: AAA domain; P 98.8 2.1E-08 4.6E-13 72.7 6.6 22 11-32 1-22 (129)
153 cd02023 UMPK Uridine monophosp 98.8 7.4E-08 1.6E-12 75.6 10.0 23 10-32 1-23 (198)
154 PRK04220 2-phosphoglycerate ki 98.8 1.7E-07 3.7E-12 77.5 12.5 30 6-35 90-119 (301)
155 KOG3062|consensus 98.7 4.9E-07 1.1E-11 70.9 12.6 140 9-188 2-147 (281)
156 KOG3308|consensus 98.7 3.3E-07 7.2E-12 70.6 10.7 41 6-46 2-43 (225)
157 COG2326 Uncharacterized conser 98.7 1E-07 2.3E-12 75.8 7.9 147 7-197 73-247 (270)
158 PRK15453 phosphoribulokinase; 98.6 1.4E-07 3E-12 77.2 8.5 38 6-43 3-40 (290)
159 PRK09270 nucleoside triphospha 98.6 1.1E-06 2.4E-11 70.7 13.3 33 6-38 31-63 (229)
160 PF13207 AAA_17: AAA domain; P 98.6 2.1E-08 4.5E-13 72.3 2.3 30 10-39 1-30 (121)
161 PRK12337 2-phosphoglycerate ki 98.6 9.6E-07 2.1E-11 76.9 12.7 38 6-43 253-291 (475)
162 PHA03134 thymidine kinase; Pro 98.6 4.5E-06 9.9E-11 69.7 15.9 173 7-188 12-208 (340)
163 PHA03135 thymidine kinase; Pro 98.6 4.8E-06 1E-10 69.7 15.4 169 9-187 11-203 (343)
164 COG3911 Predicted ATPase [Gene 98.6 9.7E-07 2.1E-11 65.0 9.9 153 4-187 5-161 (183)
165 cd02025 PanK Pantothenate kina 98.5 6.2E-07 1.3E-11 71.7 8.9 33 10-42 1-35 (220)
166 PHA03138 thymidine kinase; Pro 98.5 4.6E-06 1E-10 69.8 14.2 155 9-171 13-193 (340)
167 COG4639 Predicted kinase [Gene 98.5 3.5E-07 7.7E-12 67.8 6.7 73 83-182 60-132 (168)
168 COG3172 NadR Predicted ATPase/ 98.5 1.1E-05 2.3E-10 60.3 14.2 169 9-218 9-185 (187)
169 cd02029 PRK_like Phosphoribulo 98.5 9.8E-07 2.1E-11 71.7 9.3 34 10-43 1-34 (277)
170 COG2074 2-phosphoglycerate kin 98.5 3E-06 6.4E-11 67.7 11.4 41 4-44 85-126 (299)
171 PRK05439 pantothenate kinase; 98.5 2.2E-06 4.8E-11 71.6 10.8 38 6-43 84-123 (311)
172 TIGR00554 panK_bact pantothena 98.4 4.1E-07 8.9E-12 75.3 6.2 29 6-34 60-88 (290)
173 KOG4238|consensus 98.4 5.8E-07 1.3E-11 75.0 6.0 37 7-43 49-85 (627)
174 PF03668 ATP_bind_2: P-loop AT 98.4 6.2E-06 1.3E-10 67.5 11.8 64 145-211 81-154 (284)
175 cd02019 NK Nucleoside/nucleoti 98.4 7.6E-07 1.6E-11 57.8 4.6 32 10-43 1-32 (69)
176 cd00071 GMPK Guanosine monopho 98.3 2.9E-06 6.2E-11 62.7 7.8 25 10-34 1-25 (137)
177 TIGR01526 nadR_NMN_Atrans nico 98.3 1.4E-05 3.1E-10 67.6 12.6 153 8-196 162-318 (325)
178 COG1618 Predicted nucleotide k 98.3 1.9E-06 4E-11 64.4 5.5 35 7-41 4-38 (179)
179 PLN02165 adenylate isopentenyl 98.2 1E-06 2.2E-11 74.0 4.2 35 6-40 41-75 (334)
180 PRK10751 molybdopterin-guanine 98.2 2.4E-06 5.2E-11 65.4 5.8 42 1-44 1-42 (173)
181 PLN02348 phosphoribulokinase 98.2 1.3E-05 2.9E-10 68.6 10.8 30 6-35 47-76 (395)
182 PF06414 Zeta_toxin: Zeta toxi 98.2 1.2E-06 2.5E-11 69.0 4.1 28 6-33 13-40 (199)
183 COG1072 CoaA Panthothenate kin 98.2 3.4E-06 7.3E-11 68.4 6.7 33 6-38 80-112 (283)
184 PHA00729 NTP-binding motif con 98.2 1.4E-05 3.1E-10 63.6 9.5 27 7-33 16-42 (226)
185 PF00485 PRK: Phosphoribulokin 98.2 1.7E-06 3.7E-11 67.7 4.2 29 10-38 1-29 (194)
186 KOG0707|consensus 98.2 4.7E-05 1E-09 60.2 12.1 38 9-46 38-77 (231)
187 PF01591 6PF2K: 6-phosphofruct 98.2 5.2E-05 1.1E-09 60.4 12.1 36 8-43 12-47 (222)
188 cd02028 UMPK_like Uridine mono 98.1 4.9E-06 1.1E-10 64.3 5.0 34 10-43 1-34 (179)
189 PLN02318 phosphoribulokinase/u 98.1 9.5E-06 2.1E-10 72.7 7.3 27 7-33 64-90 (656)
190 PRK07429 phosphoribulokinase; 98.1 6.1E-06 1.3E-10 69.6 5.1 36 1-36 1-36 (327)
191 PF03308 ArgK: ArgK protein; 98.0 7.8E-06 1.7E-10 66.0 5.4 51 6-56 27-82 (266)
192 PHA03133 thymidine kinase; Pro 98.0 0.00018 4E-09 60.6 13.6 173 9-187 41-237 (368)
193 cd02026 PRK Phosphoribulokinas 98.0 2.4E-05 5.2E-10 64.5 8.2 28 10-37 1-28 (273)
194 COG1660 Predicted P-loop-conta 98.0 0.00017 3.7E-09 58.1 12.2 62 148-212 85-156 (286)
195 COG3896 Chloramphenicol 3-O-ph 98.0 2.8E-05 6.1E-10 57.9 6.8 168 3-212 18-204 (205)
196 COG1703 ArgK Putative periplas 98.0 1.2E-05 2.5E-10 66.0 4.9 52 6-57 49-105 (323)
197 PF13189 Cytidylate_kin2: Cyti 97.9 1.7E-05 3.7E-10 61.3 4.9 29 10-38 1-29 (179)
198 cd03116 MobB Molybdenum is an 97.9 2.5E-05 5.4E-10 59.2 5.6 36 9-44 2-37 (159)
199 PRK00771 signal recognition pa 97.9 0.00014 3E-09 63.8 10.9 37 7-43 94-130 (437)
200 PRK09435 membrane ATPase/prote 97.9 2.4E-05 5.2E-10 66.1 5.8 38 6-43 54-91 (332)
201 smart00382 AAA ATPases associa 97.9 1.6E-05 3.4E-10 57.6 4.1 34 8-41 2-35 (148)
202 COG1763 MobB Molybdopterin-gua 97.9 2.4E-05 5.1E-10 59.2 4.7 37 8-44 2-38 (161)
203 PF03205 MobB: Molybdopterin g 97.9 3.2E-05 6.9E-10 57.4 5.3 34 9-42 1-34 (140)
204 PF08303 tRNA_lig_kinase: tRNA 97.8 2E-05 4.3E-10 59.3 4.1 33 11-43 2-35 (168)
205 TIGR00176 mobB molybdopterin-g 97.8 2.5E-05 5.4E-10 59.0 4.7 34 10-43 1-34 (155)
206 PF00448 SRP54: SRP54-type pro 97.8 6.3E-05 1.4E-09 59.0 6.8 36 8-43 1-36 (196)
207 PF00004 AAA: ATPase family as 97.8 1.6E-05 3.6E-10 57.5 3.0 23 11-33 1-23 (132)
208 PLN02796 D-glycerate 3-kinase 97.8 3.6E-05 7.8E-10 65.0 5.3 37 6-42 98-134 (347)
209 PF03266 NTPase_1: NTPase; In 97.8 3.4E-05 7.4E-10 59.0 4.5 30 11-40 2-31 (168)
210 PRK09169 hypothetical protein; 97.8 0.0001 2.3E-09 73.8 8.6 139 8-197 2110-2264(2316)
211 PRK14974 cell division protein 97.8 8.6E-05 1.9E-09 62.9 7.0 37 7-43 139-175 (336)
212 PTZ00322 6-phosphofructo-2-kin 97.8 0.00021 4.6E-09 66.2 10.2 38 7-44 214-251 (664)
213 smart00763 AAA_PrkA PrkA AAA d 97.8 2.9E-05 6.3E-10 65.9 4.1 28 7-34 77-104 (361)
214 PRK14490 putative bifunctional 97.7 4.9E-05 1.1E-09 65.5 5.4 38 6-44 3-40 (369)
215 cd03115 SRP The signal recogni 97.7 0.0001 2.2E-09 56.4 6.6 34 10-43 2-35 (173)
216 TIGR00150 HI0065_YjeE ATPase, 97.7 3.4E-05 7.5E-10 56.5 3.7 30 6-35 20-49 (133)
217 PRK00091 miaA tRNA delta(2)-is 97.7 2.4E-05 5.2E-10 65.5 3.1 35 7-41 3-37 (307)
218 TIGR00064 ftsY signal recognit 97.7 7.3E-05 1.6E-09 61.6 5.8 38 6-43 70-107 (272)
219 KOG0744|consensus 97.7 3E-05 6.6E-10 64.3 3.4 28 8-35 177-204 (423)
220 PLN02840 tRNA dimethylallyltra 97.7 3.2E-05 7E-10 67.0 3.6 34 6-39 19-52 (421)
221 PLN03046 D-glycerate 3-kinase; 97.7 7.6E-05 1.6E-09 64.5 5.7 38 6-43 210-247 (460)
222 PRK10416 signal recognition pa 97.7 8.5E-05 1.8E-09 62.6 5.9 38 6-43 112-149 (318)
223 PF03029 ATP_bind_1: Conserved 97.7 4.3E-05 9.3E-10 61.8 3.9 31 13-43 1-31 (238)
224 cd00009 AAA The AAA+ (ATPases 97.7 0.0001 2.2E-09 53.8 5.4 37 7-43 18-54 (151)
225 KOG0780|consensus 97.7 0.00018 3.9E-09 61.0 7.4 38 6-43 99-136 (483)
226 TIGR00750 lao LAO/AO transport 97.6 9.7E-05 2.1E-09 61.8 5.7 38 6-43 32-69 (300)
227 PRK14494 putative molybdopteri 97.6 9.9E-05 2.1E-09 59.1 5.4 35 9-43 2-36 (229)
228 PRK13768 GTPase; Provisional 97.6 9.8E-05 2.1E-09 60.3 5.5 36 8-43 2-37 (253)
229 COG1136 SalX ABC-type antimicr 97.6 4.8E-05 1E-09 60.6 3.5 28 6-33 29-56 (226)
230 PRK05800 cobU adenosylcobinami 97.6 4.8E-05 1E-09 58.3 3.3 25 9-33 2-26 (170)
231 PRK14493 putative bifunctional 97.6 0.00011 2.3E-09 60.6 5.5 35 9-44 2-36 (274)
232 COG1126 GlnQ ABC-type polar am 97.6 4.5E-05 9.8E-10 59.9 3.1 26 5-30 25-50 (240)
233 TIGR01425 SRP54_euk signal rec 97.6 0.00013 2.8E-09 63.6 6.0 37 7-43 99-135 (429)
234 PRK12377 putative replication 97.6 0.0016 3.4E-08 53.0 11.9 35 9-43 102-136 (248)
235 PF13245 AAA_19: Part of AAA d 97.6 9.2E-05 2E-09 48.9 3.7 25 8-32 10-35 (76)
236 PF05729 NACHT: NACHT domain 97.6 9.2E-05 2E-09 55.7 4.0 28 9-36 1-28 (166)
237 PF13555 AAA_29: P-loop contai 97.5 0.00014 3.1E-09 45.8 4.0 25 8-32 23-47 (62)
238 COG1116 TauB ABC-type nitrate/ 97.5 6.6E-05 1.4E-09 60.2 3.1 29 6-34 27-55 (248)
239 TIGR03499 FlhF flagellar biosy 97.5 0.00015 3.3E-09 60.1 5.5 37 7-43 193-231 (282)
240 TIGR02881 spore_V_K stage V sp 97.5 0.00012 2.6E-09 60.0 4.7 30 7-36 41-70 (261)
241 PRK14489 putative bifunctional 97.5 0.00015 3.3E-09 62.4 5.5 38 7-44 204-241 (366)
242 COG4619 ABC-type uncharacteriz 97.5 7.7E-05 1.7E-09 56.5 3.1 27 6-32 27-53 (223)
243 PF13401 AAA_22: AAA domain; P 97.5 9E-05 2E-09 53.7 3.4 39 7-45 3-46 (131)
244 PF06309 Torsin: Torsin; Inte 97.5 0.00018 3.8E-09 52.0 4.7 38 4-41 49-86 (127)
245 TIGR00390 hslU ATP-dependent p 97.5 0.00017 3.7E-09 62.4 5.4 34 8-41 47-80 (441)
246 PRK13695 putative NTPase; Prov 97.5 0.00018 3.9E-09 55.2 5.1 31 9-39 1-31 (174)
247 PRK10867 signal recognition pa 97.5 0.00035 7.6E-09 61.2 7.2 38 6-43 98-136 (433)
248 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00019 4.1E-09 48.7 4.6 34 10-43 1-34 (99)
249 cd00820 PEPCK_HprK Phosphoenol 97.5 0.00011 2.5E-09 51.6 3.4 24 6-29 13-36 (107)
250 cd01120 RecA-like_NTPases RecA 97.5 0.00016 3.5E-09 54.0 4.5 35 10-44 1-35 (165)
251 COG0378 HypB Ni2+-binding GTPa 97.5 0.00023 5.1E-09 55.0 5.3 36 6-42 10-46 (202)
252 KOG1384|consensus 97.5 0.00051 1.1E-08 57.1 7.6 35 7-41 6-40 (348)
253 PRK14495 putative molybdopteri 97.5 0.00018 4E-09 62.4 5.2 36 9-44 2-37 (452)
254 PRK04296 thymidine kinase; Pro 97.5 0.00021 4.5E-09 55.8 5.1 35 8-42 2-36 (190)
255 TIGR02237 recomb_radB DNA repa 97.5 0.00026 5.7E-09 55.8 5.8 39 6-44 10-48 (209)
256 COG0541 Ffh Signal recognition 97.5 0.0021 4.5E-08 55.6 11.4 38 6-43 98-135 (451)
257 cd01131 PilT Pilus retraction 97.5 0.0002 4.3E-09 56.3 5.0 26 10-35 3-28 (198)
258 COG1855 ATPase (PilT family) [ 97.4 0.00021 4.5E-09 61.8 5.1 36 11-46 266-301 (604)
259 PRK11889 flhF flagellar biosyn 97.4 0.00025 5.3E-09 61.1 5.6 37 7-43 240-276 (436)
260 PF02367 UPF0079: Uncharacteri 97.4 0.00015 3.2E-09 52.4 3.6 30 6-35 13-42 (123)
261 PF05496 RuvB_N: Holliday junc 97.4 9.4E-05 2E-09 58.7 2.8 26 9-34 51-76 (233)
262 cd01394 radB RadB. The archaea 97.4 0.00029 6.3E-09 56.0 5.7 38 6-43 17-54 (218)
263 CHL00181 cbbX CbbX; Provisiona 97.4 0.0002 4.2E-09 59.6 4.8 31 7-37 58-88 (287)
264 PRK05201 hslU ATP-dependent pr 97.4 0.00022 4.9E-09 61.7 5.2 34 8-41 50-83 (443)
265 PF07728 AAA_5: AAA domain (dy 97.4 0.00013 2.9E-09 53.6 3.5 23 11-33 2-24 (139)
266 PF00693 Herpes_TK: Thymidine 97.4 0.0057 1.2E-07 50.2 13.0 76 112-187 105-189 (281)
267 PF00910 RNA_helicase: RNA hel 97.4 0.00013 2.8E-09 51.5 3.0 24 11-34 1-24 (107)
268 cd03114 ArgK-like The function 97.4 0.00024 5.1E-09 53.2 4.6 33 11-43 2-34 (148)
269 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00033 7.2E-09 55.8 5.6 37 7-43 37-73 (226)
270 PRK09183 transposase/IS protei 97.4 0.00028 6.2E-09 57.8 5.2 37 7-43 101-137 (259)
271 PF13191 AAA_16: AAA ATPase do 97.4 0.00017 3.7E-09 55.3 3.7 30 6-35 22-51 (185)
272 PRK06851 hypothetical protein; 97.4 0.00043 9.3E-09 59.2 6.1 34 8-41 30-63 (367)
273 PLN02748 tRNA dimethylallyltra 97.4 0.00012 2.6E-09 64.5 2.9 35 6-40 20-54 (468)
274 COG2884 FtsE Predicted ATPase 97.4 0.00017 3.7E-09 55.7 3.2 30 5-34 25-54 (223)
275 TIGR01650 PD_CobS cobaltochela 97.4 0.00014 3.1E-09 61.1 3.0 33 8-40 64-96 (327)
276 PHA02575 1 deoxynucleoside mon 97.3 0.00017 3.6E-09 57.3 3.1 23 9-31 1-23 (227)
277 PRK08084 DNA replication initi 97.3 0.00043 9.3E-09 55.9 5.6 36 8-43 45-80 (235)
278 KOG1532|consensus 97.3 0.0029 6.3E-08 51.6 10.1 33 6-38 17-49 (366)
279 COG3839 MalK ABC-type sugar tr 97.3 0.00018 4E-09 60.7 3.4 28 6-33 27-54 (338)
280 PRK12724 flagellar biosynthesi 97.3 0.00063 1.4E-08 59.1 6.7 37 7-43 222-259 (432)
281 TIGR00101 ureG urease accessor 97.3 0.00023 4.9E-09 56.0 3.7 27 8-34 1-27 (199)
282 PF13173 AAA_14: AAA domain 97.3 0.00027 5.8E-09 51.4 3.8 26 8-33 2-27 (128)
283 PF13604 AAA_30: AAA domain; P 97.3 0.00046 9.9E-09 54.1 5.3 36 8-43 18-53 (196)
284 PRK12726 flagellar biosynthesi 97.3 0.00086 1.9E-08 57.5 7.2 38 6-43 204-241 (407)
285 PF00005 ABC_tran: ABC transpo 97.3 0.00015 3.4E-09 53.0 2.4 29 6-34 9-37 (137)
286 PRK06851 hypothetical protein; 97.3 0.00045 9.8E-09 59.1 5.5 38 8-45 214-251 (367)
287 COG1120 FepC ABC-type cobalami 97.3 0.00014 3.1E-09 59.1 2.3 30 5-34 25-54 (258)
288 COG3840 ThiQ ABC-type thiamine 97.3 0.00023 5E-09 54.7 3.2 27 5-31 22-48 (231)
289 COG4240 Predicted kinase [Gene 97.3 0.00049 1.1E-08 54.6 5.1 39 5-43 47-86 (300)
290 TIGR00959 ffh signal recogniti 97.3 0.00055 1.2E-08 59.9 6.0 37 7-43 98-135 (428)
291 PRK09361 radB DNA repair and r 97.3 0.00065 1.4E-08 54.3 5.8 39 6-44 21-59 (225)
292 cd02034 CooC The accessory pro 97.3 0.00066 1.4E-08 48.6 5.2 33 11-43 2-34 (116)
293 TIGR00174 miaA tRNA isopenteny 97.3 0.00015 3.2E-09 60.1 2.0 31 10-40 1-31 (287)
294 cd03238 ABC_UvrA The excision 97.2 0.00028 6.1E-09 54.4 3.4 24 6-29 19-42 (176)
295 cd01130 VirB11-like_ATPase Typ 97.2 0.00024 5.2E-09 55.2 3.0 27 7-33 24-50 (186)
296 TIGR01166 cbiO cobalt transpor 97.2 0.00029 6.3E-09 54.8 3.5 28 6-33 16-43 (190)
297 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0006 1.3E-08 55.9 5.5 37 7-43 35-71 (259)
298 PF01695 IstB_IS21: IstB-like 97.2 0.00069 1.5E-08 52.3 5.5 37 7-43 46-82 (178)
299 TIGR00960 3a0501s02 Type II (G 97.2 0.00028 6.1E-09 56.0 3.4 28 6-33 27-54 (216)
300 PRK06893 DNA replication initi 97.2 0.00057 1.2E-08 54.9 5.2 35 9-43 40-74 (229)
301 cd00544 CobU Adenosylcobinamid 97.2 0.0013 2.9E-08 50.3 6.9 31 10-43 1-31 (169)
302 TIGR03015 pepcterm_ATPase puta 97.2 0.00027 5.9E-09 57.9 3.3 27 8-34 43-69 (269)
303 cd03292 ABC_FtsE_transporter F 97.2 0.0003 6.6E-09 55.7 3.5 28 6-33 25-52 (214)
304 PRK08903 DnaA regulatory inact 97.2 0.00071 1.5E-08 54.1 5.6 36 8-43 42-77 (227)
305 COG3842 PotA ABC-type spermidi 97.2 0.00027 5.9E-09 60.0 3.3 26 6-31 29-54 (352)
306 PF01926 MMR_HSR1: 50S ribosom 97.2 0.00029 6.2E-09 50.1 3.0 20 11-30 2-21 (116)
307 PF07726 AAA_3: ATPase family 97.2 0.00016 3.5E-09 52.4 1.6 24 11-34 2-25 (131)
308 PF03193 DUF258: Protein of un 97.2 0.00031 6.8E-09 53.1 3.3 24 8-31 35-58 (161)
309 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00033 7.1E-09 55.4 3.6 28 6-33 25-52 (211)
310 cd01124 KaiC KaiC is a circadi 97.2 0.00059 1.3E-08 52.6 4.9 33 11-43 2-34 (187)
311 PF00437 T2SE: Type II/IV secr 97.2 0.00051 1.1E-08 56.5 4.8 39 7-45 126-164 (270)
312 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00032 6.9E-09 55.7 3.5 28 6-33 28-55 (218)
313 PRK06526 transposase; Provisio 97.2 0.00042 9.2E-09 56.6 4.2 34 8-41 98-131 (254)
314 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00032 7E-09 54.1 3.3 28 6-33 23-50 (177)
315 PF03215 Rad17: Rad17 cell cyc 97.2 0.00032 6.8E-09 62.9 3.7 28 7-34 44-71 (519)
316 PRK14491 putative bifunctional 97.2 0.00065 1.4E-08 62.0 5.8 38 7-44 9-46 (597)
317 PRK13764 ATPase; Provisional 97.2 0.00054 1.2E-08 62.2 5.2 38 8-45 257-294 (602)
318 PF02492 cobW: CobW/HypB/UreG, 97.2 0.00065 1.4E-08 52.4 5.0 34 9-43 1-34 (178)
319 PRK08181 transposase; Validate 97.2 0.0013 2.9E-08 54.0 7.1 36 8-43 106-141 (269)
320 TIGR00073 hypB hydrogenase acc 97.2 0.00048 1E-08 54.4 4.3 35 6-41 20-54 (207)
321 TIGR02673 FtsE cell division A 97.2 0.00034 7.4E-09 55.4 3.5 28 6-33 26-53 (214)
322 PRK15455 PrkA family serine pr 97.2 0.00033 7.2E-09 62.9 3.6 29 7-35 102-130 (644)
323 cd03269 ABC_putative_ATPase Th 97.2 0.00036 7.8E-09 55.1 3.5 27 6-32 24-50 (210)
324 cd03261 ABC_Org_Solvent_Resist 97.2 0.00036 7.7E-09 56.2 3.5 28 6-33 24-51 (235)
325 cd03263 ABC_subfamily_A The AB 97.2 0.00037 8E-09 55.4 3.5 28 6-33 26-53 (220)
326 KOG1533|consensus 97.2 0.00034 7.5E-09 55.6 3.2 33 11-43 5-37 (290)
327 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00036 7.8E-09 54.9 3.4 28 6-33 24-51 (205)
328 PRK10463 hydrogenase nickel in 97.2 0.00046 1E-08 57.1 4.1 36 6-42 102-137 (290)
329 PF08477 Miro: Miro-like prote 97.2 0.00039 8.6E-09 49.4 3.3 21 11-31 2-22 (119)
330 TIGR02211 LolD_lipo_ex lipopro 97.2 0.00038 8.2E-09 55.4 3.5 28 6-33 29-56 (221)
331 cd03259 ABC_Carb_Solutes_like 97.2 0.00039 8.5E-09 55.0 3.5 28 6-33 24-51 (213)
332 cd03293 ABC_NrtD_SsuB_transpor 97.2 0.00037 8E-09 55.5 3.3 28 6-33 28-55 (220)
333 cd03224 ABC_TM1139_LivF_branch 97.2 0.0004 8.7E-09 55.3 3.5 28 6-33 24-51 (222)
334 cd04163 Era Era subfamily. Er 97.2 0.00044 9.5E-09 51.5 3.6 23 8-30 3-25 (168)
335 TIGR03608 L_ocin_972_ABC putat 97.2 0.00039 8.5E-09 54.7 3.4 28 6-33 22-49 (206)
336 cd03264 ABC_drug_resistance_li 97.2 0.00036 7.8E-09 55.2 3.2 26 7-33 25-50 (211)
337 cd03301 ABC_MalK_N The N-termi 97.1 0.00041 8.9E-09 54.9 3.5 28 6-33 24-51 (213)
338 cd03260 ABC_PstB_phosphate_tra 97.1 0.00041 8.8E-09 55.5 3.5 27 6-32 24-50 (227)
339 cd03235 ABC_Metallic_Cations A 97.1 0.00036 7.8E-09 55.2 3.2 27 6-32 23-49 (213)
340 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00041 8.9E-09 54.9 3.5 28 6-33 24-51 (213)
341 COG0466 Lon ATP-dependent Lon 97.1 0.00028 6E-09 64.2 2.8 34 6-39 348-381 (782)
342 cd03257 ABC_NikE_OppD_transpor 97.1 0.00039 8.5E-09 55.6 3.4 28 6-33 29-56 (228)
343 cd03219 ABC_Mj1267_LivG_branch 97.1 0.00038 8.2E-09 56.0 3.3 28 6-33 24-51 (236)
344 cd03271 ABC_UvrA_II The excisi 97.1 0.00037 7.9E-09 57.1 3.2 24 5-28 18-41 (261)
345 PRK08939 primosomal protein Dn 97.1 0.002 4.3E-08 54.1 7.7 39 7-45 155-193 (306)
346 cd01129 PulE-GspE PulE/GspE Th 97.1 0.00069 1.5E-08 55.7 4.8 38 8-45 80-117 (264)
347 TIGR02315 ABC_phnC phosphonate 97.1 0.00041 9E-09 56.0 3.5 28 6-33 26-53 (243)
348 PF10662 PduV-EutP: Ethanolami 97.1 0.00042 9.1E-09 51.3 3.1 21 10-30 3-23 (143)
349 cd03256 ABC_PhnC_transporter A 97.1 0.00043 9.3E-09 55.8 3.5 28 6-33 25-52 (241)
350 PRK11629 lolD lipoprotein tran 97.1 0.00044 9.4E-09 55.6 3.5 28 6-33 33-60 (233)
351 PRK15177 Vi polysaccharide exp 97.1 0.00044 9.6E-09 54.9 3.4 28 6-33 11-38 (213)
352 cd03229 ABC_Class3 This class 97.1 0.00048 1E-08 53.1 3.5 28 6-33 24-51 (178)
353 COG0467 RAD55 RecA-superfamily 97.1 0.0036 7.8E-08 51.2 8.9 38 6-43 21-58 (260)
354 cd03230 ABC_DR_subfamily_A Thi 97.1 0.00047 1E-08 52.8 3.5 28 6-33 24-51 (173)
355 cd03223 ABCD_peroxisomal_ALDP 97.1 0.00048 1E-08 52.5 3.5 28 6-33 25-52 (166)
356 cd03258 ABC_MetN_methionine_tr 97.1 0.00046 9.9E-09 55.4 3.5 29 6-34 29-57 (233)
357 PF06745 KaiC: KaiC; InterPro 97.1 0.0028 6.1E-08 50.6 8.1 38 6-43 17-55 (226)
358 cd03246 ABCC_Protease_Secretio 97.1 0.0005 1.1E-08 52.7 3.5 28 6-33 26-53 (173)
359 cd03232 ABC_PDR_domain2 The pl 97.1 0.00046 1E-08 53.8 3.4 26 6-31 31-56 (192)
360 TIGR03771 anch_rpt_ABC anchore 97.1 0.00048 1E-08 55.0 3.5 28 6-33 4-31 (223)
361 cd03296 ABC_CysA_sulfate_impor 97.1 0.00047 1E-08 55.7 3.5 28 6-33 26-53 (239)
362 KOG2004|consensus 97.1 0.00028 6.1E-09 64.1 2.4 33 6-38 436-468 (906)
363 cd03268 ABC_BcrA_bacitracin_re 97.1 0.00049 1.1E-08 54.3 3.5 28 6-33 24-51 (208)
364 cd00984 DnaB_C DnaB helicase C 97.1 0.001 2.2E-08 53.6 5.5 38 6-43 11-49 (242)
365 TIGR02524 dot_icm_DotB Dot/Icm 97.1 0.00075 1.6E-08 57.8 4.9 27 7-33 133-159 (358)
366 cd03247 ABCC_cytochrome_bd The 97.1 0.0005 1.1E-08 52.9 3.5 28 6-33 26-53 (178)
367 PRK10247 putative ABC transpor 97.1 0.00049 1.1E-08 55.1 3.5 28 6-33 31-58 (225)
368 cd03265 ABC_DrrA DrrA is the A 97.1 0.0005 1.1E-08 54.8 3.5 28 6-33 24-51 (220)
369 TIGR01978 sufC FeS assembly AT 97.1 0.00047 1E-08 55.7 3.4 26 6-31 24-49 (243)
370 cd03237 ABC_RNaseL_inhibitor_d 97.1 0.00053 1.2E-08 55.7 3.7 28 6-33 23-50 (246)
371 PRK13541 cytochrome c biogenes 97.1 0.00051 1.1E-08 53.7 3.5 28 6-33 24-51 (195)
372 TIGR02880 cbbX_cfxQ probable R 97.1 0.00067 1.5E-08 56.3 4.4 30 8-37 58-87 (284)
373 PRK05973 replicative DNA helic 97.1 0.0012 2.5E-08 53.3 5.5 38 6-43 62-99 (237)
374 TIGR03410 urea_trans_UrtE urea 97.1 0.0005 1.1E-08 55.1 3.4 29 6-34 24-52 (230)
375 PRK11248 tauB taurine transpor 97.1 0.00051 1.1E-08 56.1 3.5 28 6-33 25-52 (255)
376 TIGR03864 PQQ_ABC_ATP ABC tran 97.1 0.00052 1.1E-08 55.3 3.5 28 6-33 25-52 (236)
377 PRK08533 flagellar accessory p 97.1 0.0013 2.8E-08 53.0 5.7 38 6-43 22-59 (230)
378 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.00054 1.2E-08 51.0 3.3 28 6-33 24-51 (144)
379 TIGR02640 gas_vesic_GvpN gas v 97.1 0.00041 8.9E-09 56.9 2.9 27 8-34 21-47 (262)
380 PRK13539 cytochrome c biogenes 97.1 0.00056 1.2E-08 54.0 3.5 28 6-33 26-53 (207)
381 cd03214 ABC_Iron-Siderophores_ 97.1 0.00058 1.3E-08 52.7 3.5 28 6-33 23-50 (180)
382 PF04665 Pox_A32: Poxvirus A32 97.1 0.0012 2.6E-08 53.2 5.4 35 6-41 11-45 (241)
383 COG3638 ABC-type phosphate/pho 97.1 0.00056 1.2E-08 54.5 3.4 29 6-34 28-56 (258)
384 PRK10584 putative ABC transpor 97.1 0.00055 1.2E-08 54.8 3.5 28 6-33 34-61 (228)
385 TIGR00635 ruvB Holliday juncti 97.1 0.00058 1.3E-08 57.1 3.8 27 8-34 30-56 (305)
386 cd03216 ABC_Carb_Monos_I This 97.1 0.00057 1.2E-08 51.9 3.4 28 6-33 24-51 (163)
387 TIGR02770 nickel_nikD nickel i 97.1 0.00053 1.1E-08 55.0 3.4 28 6-33 10-37 (230)
388 PRK13540 cytochrome c biogenes 97.1 0.00057 1.2E-08 53.6 3.5 27 6-32 25-51 (200)
389 PRK11264 putative amino-acid A 97.1 0.00055 1.2E-08 55.6 3.5 28 6-33 27-54 (250)
390 PRK14250 phosphate ABC transpo 97.1 0.00054 1.2E-08 55.4 3.5 28 6-33 27-54 (241)
391 PRK14722 flhF flagellar biosyn 97.1 0.00066 1.4E-08 58.3 4.1 37 6-42 135-173 (374)
392 cd03254 ABCC_Glucan_exporter_l 97.1 0.00055 1.2E-08 54.8 3.5 28 6-33 27-54 (229)
393 cd03250 ABCC_MRP_domain1 Domai 97.0 0.00058 1.3E-08 53.7 3.5 28 6-33 29-56 (204)
394 PRK11124 artP arginine transpo 97.0 0.00057 1.2E-08 55.3 3.5 27 6-32 26-52 (242)
395 cd03245 ABCC_bacteriocin_expor 97.0 0.00058 1.2E-08 54.3 3.5 28 6-33 28-55 (220)
396 cd03234 ABCG_White The White s 97.0 0.00061 1.3E-08 54.5 3.6 28 6-33 31-58 (226)
397 COG1125 OpuBA ABC-type proline 97.0 0.00052 1.1E-08 55.4 3.1 30 5-34 24-53 (309)
398 cd03218 ABC_YhbG The ABC trans 97.0 0.00059 1.3E-08 54.7 3.5 28 6-33 24-51 (232)
399 COG1124 DppF ABC-type dipeptid 97.0 0.00057 1.2E-08 54.7 3.3 29 6-34 31-59 (252)
400 PRK14242 phosphate transporter 97.0 0.00056 1.2E-08 55.7 3.4 27 6-32 30-56 (253)
401 COG1117 PstB ABC-type phosphat 97.0 0.00059 1.3E-08 53.7 3.3 29 6-34 31-59 (253)
402 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0014 3.1E-08 52.9 5.8 38 6-43 19-56 (237)
403 cd03233 ABC_PDR_domain1 The pl 97.0 0.00054 1.2E-08 53.9 3.2 28 6-33 31-58 (202)
404 TIGR02323 CP_lyasePhnK phospho 97.0 0.00056 1.2E-08 55.7 3.4 28 6-33 27-54 (253)
405 PRK12608 transcription termina 97.0 0.0029 6.3E-08 54.2 7.7 30 6-35 131-160 (380)
406 cd03215 ABC_Carb_Monos_II This 97.0 0.0006 1.3E-08 52.7 3.4 28 6-33 24-51 (182)
407 PRK10895 lipopolysaccharide AB 97.0 0.0006 1.3E-08 55.1 3.5 28 6-33 27-54 (241)
408 cd03228 ABCC_MRP_Like The MRP 97.0 0.00065 1.4E-08 52.0 3.5 28 6-33 26-53 (171)
409 cd03244 ABCC_MRP_domain2 Domai 97.0 0.00061 1.3E-08 54.2 3.5 28 6-33 28-55 (221)
410 cd03266 ABC_NatA_sodium_export 97.0 0.00062 1.3E-08 54.1 3.5 28 6-33 29-56 (218)
411 TIGR01420 pilT_fam pilus retra 97.0 0.00095 2.1E-08 56.9 4.8 38 8-45 122-160 (343)
412 PRK14247 phosphate ABC transpo 97.0 0.00061 1.3E-08 55.3 3.5 28 6-33 27-54 (250)
413 cd03283 ABC_MutS-like MutS-lik 97.0 0.00066 1.4E-08 53.4 3.5 26 7-32 24-49 (199)
414 PRK11247 ssuB aliphatic sulfon 97.0 0.00062 1.3E-08 55.7 3.5 28 6-33 36-63 (257)
415 COG1419 FlhF Flagellar GTP-bin 97.0 0.016 3.4E-07 50.0 12.0 37 7-43 202-240 (407)
416 PRK10744 pstB phosphate transp 97.0 0.00061 1.3E-08 55.7 3.4 28 6-33 37-64 (260)
417 PRK14267 phosphate ABC transpo 97.0 0.00062 1.4E-08 55.4 3.5 28 6-33 28-55 (253)
418 TIGR01184 ntrCD nitrate transp 97.0 0.00065 1.4E-08 54.6 3.5 28 6-33 9-36 (230)
419 COG2804 PulE Type II secretory 97.0 0.005 1.1E-07 54.3 9.1 37 9-45 259-295 (500)
420 cd03251 ABCC_MsbA MsbA is an e 97.0 0.00065 1.4E-08 54.6 3.5 28 6-33 26-53 (234)
421 PRK10908 cell division protein 97.0 0.00066 1.4E-08 54.1 3.5 28 6-33 26-53 (222)
422 PRK13538 cytochrome c biogenes 97.0 0.00068 1.5E-08 53.4 3.5 29 6-34 25-53 (204)
423 PRK14241 phosphate transporter 97.0 0.00065 1.4E-08 55.5 3.5 28 6-33 28-55 (258)
424 PRK03992 proteasome-activating 97.0 0.0005 1.1E-08 59.7 2.9 29 7-35 164-192 (389)
425 PRK11701 phnK phosphonate C-P 97.0 0.00063 1.4E-08 55.6 3.4 28 6-33 30-57 (258)
426 PRK14262 phosphate ABC transpo 97.0 0.0006 1.3E-08 55.4 3.2 28 6-33 27-54 (250)
427 cd03253 ABCC_ATM1_transporter 97.0 0.00066 1.4E-08 54.6 3.5 28 6-33 25-52 (236)
428 cd03295 ABC_OpuCA_Osmoprotecti 97.0 0.00068 1.5E-08 54.8 3.5 28 6-33 25-52 (242)
429 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.0 0.00066 1.4E-08 54.3 3.4 27 6-32 46-72 (224)
430 PRK14274 phosphate ABC transpo 97.0 0.00067 1.5E-08 55.5 3.5 28 6-33 36-63 (259)
431 cd03298 ABC_ThiQ_thiamine_tran 97.0 0.00069 1.5E-08 53.6 3.5 28 6-33 22-49 (211)
432 PRK09493 glnQ glutamine ABC tr 97.0 0.00068 1.5E-08 54.7 3.5 28 6-33 25-52 (240)
433 cd03252 ABCC_Hemolysin The ABC 97.0 0.00068 1.5E-08 54.6 3.4 28 6-33 26-53 (237)
434 TIGR03005 ectoine_ehuA ectoine 97.0 0.00068 1.5E-08 55.2 3.5 28 6-33 24-51 (252)
435 PRK10646 ADP-binding protein; 97.0 0.0008 1.7E-08 50.4 3.5 30 6-35 26-55 (153)
436 TIGR00972 3a0107s01c2 phosphat 97.0 0.0007 1.5E-08 54.9 3.5 28 6-33 25-52 (247)
437 TIGR01189 ccmA heme ABC export 97.0 0.00075 1.6E-08 52.8 3.6 28 6-33 24-51 (198)
438 cd03236 ABC_RNaseL_inhibitor_d 97.0 0.00072 1.6E-08 55.3 3.5 29 6-34 24-52 (255)
439 TIGR02782 TrbB_P P-type conjug 97.0 0.0012 2.7E-08 55.1 5.0 27 8-34 132-158 (299)
440 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.0 0.00069 1.5E-08 54.6 3.4 28 6-33 27-54 (238)
441 PRK14729 miaA tRNA delta(2)-is 97.0 0.0006 1.3E-08 56.8 3.1 34 6-40 2-35 (300)
442 PRK10771 thiQ thiamine transpo 97.0 0.0007 1.5E-08 54.4 3.4 28 6-33 23-50 (232)
443 PRK13648 cbiO cobalt transport 97.0 0.00072 1.6E-08 55.6 3.5 28 6-33 33-60 (269)
444 PRK08116 hypothetical protein; 97.0 0.0036 7.8E-08 51.5 7.6 36 8-43 114-149 (268)
445 PRK15056 manganese/iron transp 97.0 0.0007 1.5E-08 55.8 3.4 28 6-33 31-58 (272)
446 PRK14269 phosphate ABC transpo 97.0 0.00074 1.6E-08 54.7 3.5 27 6-32 26-52 (246)
447 PRK05703 flhF flagellar biosyn 97.0 0.0014 3E-08 57.5 5.4 36 8-43 221-258 (424)
448 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0017 3.8E-08 51.9 5.6 38 6-43 18-55 (229)
449 TIGR01242 26Sp45 26S proteasom 97.0 0.00058 1.3E-08 58.7 3.0 28 8-35 156-183 (364)
450 PRK14256 phosphate ABC transpo 97.0 0.00075 1.6E-08 54.9 3.5 27 6-32 28-54 (252)
451 PRK14255 phosphate ABC transpo 97.0 0.00076 1.6E-08 54.9 3.5 27 6-32 29-55 (252)
452 PRK11300 livG leucine/isoleuci 97.0 0.00077 1.7E-08 54.9 3.5 28 6-33 29-56 (255)
453 PRK14251 phosphate ABC transpo 97.0 0.00077 1.7E-08 54.8 3.5 28 6-33 28-55 (251)
454 TIGR02012 tigrfam_recA protein 97.0 0.0017 3.7E-08 54.6 5.6 38 6-43 53-90 (321)
455 PLN03025 replication factor C 97.0 0.0024 5.3E-08 53.9 6.6 28 9-36 35-62 (319)
456 PRK14248 phosphate ABC transpo 97.0 0.00077 1.7E-08 55.4 3.5 27 6-32 45-71 (268)
457 PF02224 Cytidylate_kin: Cytid 96.9 0.0018 3.8E-08 48.7 5.1 68 142-209 76-157 (157)
458 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.00076 1.6E-08 54.7 3.3 28 6-33 28-55 (254)
459 PRK06067 flagellar accessory p 96.9 0.0017 3.7E-08 52.2 5.4 38 6-43 23-60 (234)
460 PRK07952 DNA replication prote 96.9 0.0015 3.2E-08 53.0 5.1 35 9-43 100-134 (244)
461 PRK10575 iron-hydroxamate tran 96.9 0.00069 1.5E-08 55.6 3.2 28 6-33 35-62 (265)
462 PRK09544 znuC high-affinity zi 96.9 0.00079 1.7E-08 54.9 3.5 28 6-33 28-55 (251)
463 KOG1970|consensus 96.9 0.00069 1.5E-08 60.0 3.3 31 7-37 109-139 (634)
464 PRK00080 ruvB Holliday junctio 96.9 0.00075 1.6E-08 57.2 3.5 27 8-34 51-77 (328)
465 PRK12723 flagellar biosynthesi 96.9 0.0016 3.5E-08 56.3 5.6 37 7-43 173-213 (388)
466 COG0552 FtsY Signal recognitio 96.9 0.0014 3.1E-08 54.8 4.9 37 6-42 137-173 (340)
467 PTZ00454 26S protease regulato 96.9 0.0006 1.3E-08 59.3 2.9 29 7-35 178-206 (398)
468 cd03213 ABCG_EPDR ABCG transpo 96.9 0.00082 1.8E-08 52.5 3.4 27 6-32 33-59 (194)
469 cd03369 ABCC_NFT1 Domain 2 of 96.9 0.00084 1.8E-08 52.9 3.5 28 6-33 32-59 (207)
470 PRK14240 phosphate transporter 96.9 0.0008 1.7E-08 54.6 3.5 27 6-32 27-53 (250)
471 TIGR01277 thiQ thiamine ABC tr 96.9 0.00079 1.7E-08 53.4 3.3 28 6-33 22-49 (213)
472 cd03290 ABCC_SUR1_N The SUR do 96.9 0.00082 1.8E-08 53.4 3.5 28 6-33 25-52 (218)
473 TIGR02324 CP_lyasePhnL phospho 96.9 0.00083 1.8E-08 53.6 3.5 28 6-33 32-59 (224)
474 PRK14235 phosphate transporter 96.9 0.00082 1.8E-08 55.2 3.5 28 6-33 43-70 (267)
475 COG5192 BMS1 GTP-binding prote 96.9 0.00094 2E-08 59.4 4.0 32 6-37 67-98 (1077)
476 PRK14259 phosphate ABC transpo 96.9 0.0008 1.7E-08 55.4 3.5 28 6-33 37-64 (269)
477 PRK14249 phosphate ABC transpo 96.9 0.00084 1.8E-08 54.6 3.5 28 6-33 28-55 (251)
478 PRK13543 cytochrome c biogenes 96.9 0.00085 1.8E-08 53.3 3.5 28 6-33 35-62 (214)
479 COG1484 DnaC DNA replication p 96.9 0.0013 2.8E-08 53.8 4.5 39 7-45 104-142 (254)
480 COG0802 Predicted ATPase or ki 96.9 0.00094 2E-08 49.5 3.4 29 6-34 23-51 (149)
481 PRK13833 conjugal transfer pro 96.9 0.0015 3.2E-08 55.1 5.0 26 8-33 144-169 (323)
482 cd03248 ABCC_TAP TAP, the Tran 96.9 0.00086 1.9E-08 53.6 3.5 28 6-33 38-65 (226)
483 PRK13638 cbiO cobalt transport 96.9 0.00078 1.7E-08 55.5 3.3 28 6-33 25-52 (271)
484 PRK08727 hypothetical protein; 96.9 0.0017 3.7E-08 52.3 5.2 35 9-43 42-76 (233)
485 PRK13649 cbiO cobalt transport 96.9 0.00081 1.8E-08 55.6 3.4 28 6-33 31-58 (280)
486 PRK13548 hmuV hemin importer A 96.9 0.00082 1.8E-08 55.0 3.4 28 6-33 26-53 (258)
487 cd03294 ABC_Pro_Gly_Bertaine T 96.9 0.00085 1.9E-08 55.2 3.5 28 6-33 48-75 (269)
488 PRK14245 phosphate ABC transpo 96.9 0.00085 1.8E-08 54.5 3.4 26 6-31 27-52 (250)
489 PRK11831 putative ABC transpor 96.9 0.00085 1.8E-08 55.2 3.4 28 6-33 31-58 (269)
490 KOG1969|consensus 96.9 0.0023 5.1E-08 58.5 6.4 36 5-43 323-358 (877)
491 cd04155 Arl3 Arl3 subfamily. 96.9 0.00096 2.1E-08 50.6 3.5 25 7-31 13-37 (173)
492 PRK14261 phosphate ABC transpo 96.9 0.00088 1.9E-08 54.5 3.5 27 6-32 30-56 (253)
493 TIGR02769 nickel_nikE nickel i 96.9 0.00086 1.9E-08 55.0 3.5 28 6-33 35-62 (265)
494 TIGR01223 Pmev_kin_anim phosph 96.9 0.013 2.8E-07 44.8 9.5 25 10-34 1-25 (182)
495 cd03217 ABC_FeS_Assembly ABC-t 96.9 0.00092 2E-08 52.5 3.5 26 6-31 24-49 (200)
496 PRK14239 phosphate transporter 96.9 0.00087 1.9E-08 54.5 3.5 26 6-31 29-54 (252)
497 cd03278 ABC_SMC_barmotin Barmo 96.9 0.0009 2E-08 52.5 3.4 26 6-32 21-46 (197)
498 PRK14723 flhF flagellar biosyn 96.9 0.0088 1.9E-07 55.8 10.3 35 7-41 184-220 (767)
499 PRK13547 hmuV hemin importer A 96.9 0.00085 1.8E-08 55.4 3.4 28 6-33 25-52 (272)
500 COG1122 CbiO ABC-type cobalt t 96.9 0.00086 1.9E-08 54.1 3.3 30 6-35 28-57 (235)
No 1
>PLN02924 thymidylate kinase
Probab=100.00 E-value=1.1e-34 Score=230.76 Aligned_cols=194 Identities=48% Similarity=0.888 Sum_probs=174.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
.++|++|+|+|++||||||+++.|++.+...|+++..+++|..+.+.|+.+++++.....+.+....++|+++|+++...
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~ 92 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL 92 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999889999767888999999888766778888899999999998888
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
+.+++..|.+||+ |||++|+++|+... +.+.+|+..+....+.||++|||++|++++.+|..
T Consensus 93 I~pal~~g~vVI~-----------------DRy~~S~~ayq~~~-g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 93 MERKLKSGTTLVV-----------------DRYSYSGVAFSAAK-GLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHCCCEEEE-----------------ccchhHHHHHHHhc-CCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 9999999999999 99999999998754 77788988787778899999999999999999986
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 165 FGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 165 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
.+.++++..++++++++.|..+....+++||++++++++.++|.+.|...+.
T Consensus 155 ~~~~~~E~~~~~~rv~~~Y~~la~~~~~vIDa~~sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 155 YGGERYEKLEFQKKVAKRFQTLRDSSWKIIDASQSIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred cCccccccHHHHHHHHHHHHHHhhcCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5556678899999999999999876899999999999999999999987665
No 2
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=227.44 Aligned_cols=192 Identities=30% Similarity=0.461 Sum_probs=171.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhc-CCCCHHHHHHHHHhhhhhhh-hH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK-IELPDQAAHLLFSANRWERE-PT 84 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 84 (227)
+|++|+|+|++||||||+++.|++.|...|++|..+++|+ +++.|+.+++++.++ ..+.+.++.++|+++|++++ +.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~-~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG-GTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV 80 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999998 599999999998887 67889999999999999975 58
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC---CCCCCCEEEEeecCHHHHHH
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pd~vi~L~~~~e~~~~ 161 (227)
+.+++..|.+||| |||++|+++|++..++.+..|+..+.. ..+.||++|||++||+++.+
T Consensus 81 i~pal~~g~vVI~-----------------DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~ 143 (208)
T COG0125 81 IKPALKEGKVVIC-----------------DRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALE 143 (208)
T ss_pred HHHhhcCCCEEEE-----------------CCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHH
Confidence 9999999999999 999999999998777899899986643 34499999999999999999
Q ss_pred hcCCCC---CCccc--HHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 162 RKGFGD---ERYEQ--TDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 162 R~~~r~---~~~~~--~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
|+.+|+ ++++. .++++++.+.|..++.. .+++||+++++++|.++|.+.|...+.
T Consensus 144 R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 144 RIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred HHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence 997763 45554 44899999999999876 389999999999999999999988765
No 3
>KOG3327|consensus
Probab=100.00 E-value=2.4e-33 Score=209.89 Aligned_cols=203 Identities=48% Similarity=0.841 Sum_probs=189.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
+.++.+|+++|.++|||||++..|-+.+...+.++...+.|.+..+.|..+..++.+...+++....++|.++|+.+...
T Consensus 2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~ 81 (208)
T KOG3327|consen 2 MIRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSL 81 (208)
T ss_pred CCCccEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHH
Confidence 46799999999999999999999999998777777778889888999999999999988999999999999999999999
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
|.+.+..|.++|| |||++||.+|..+. |++..|+.+....+++||+++||+++|+.+.+|-.
T Consensus 82 i~e~l~kg~~~iv-----------------DRY~~SGvAyS~AK-gl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rgg 143 (208)
T KOG3327|consen 82 IKEKLAKGTTLIV-----------------DRYSFSGVAYSAAK-GLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGG 143 (208)
T ss_pred HHHHHhcCCeEEE-----------------ecceecchhhhhhc-CCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcC
Confidence 9999999999999 99999999999997 89999999999999999999999999999999988
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhcCCCCCcc
Q psy16874 165 FGDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLES 225 (227)
Q Consensus 165 ~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~~~~~~~ 225 (227)
.|.++++..++++++...|+.+.+. .|+++|++.+.++|.+.|..+++..+.....++|.+
T Consensus 144 fG~Erye~v~fqekv~~~~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~~~~~~l~~ 207 (208)
T KOG3327|consen 144 FGEERYETVAFQEKVLVFFQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENVLSEPIEKPLDE 207 (208)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHhccCCCCCCccc
Confidence 8888999999999999999998853 899999999999999999999999999999988863
No 4
>PRK13976 thymidylate kinase; Provisional
Probab=100.00 E-value=3.2e-31 Score=209.42 Aligned_cols=190 Identities=25% Similarity=0.310 Sum_probs=160.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh-HH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKN-N-IPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP-TL 85 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 85 (227)
++|+|+|++||||||+++.|++.|... | .++..+++|+ +.++++.+++++.....+.+....++|+++|+.+.. .+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~-~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I 79 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG-GTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVI 79 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC-CCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999986 5 5888888897 778899999988764457788888999999999864 68
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC--CCCCCCEEEEeecCHHHHHHhc
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK--GLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
.+++.+|.+||| |||++|+++|++...+.+..|+..+.. ..+.||++|||++|++++.+|+
T Consensus 80 ~p~l~~G~~VI~-----------------DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri 142 (209)
T PRK13976 80 LPALLQGKIVIC-----------------DRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRA 142 (209)
T ss_pred HHHHHCCCEEEE-----------------CCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHh
Confidence 999999999999 999999999998666777777765542 3468999999999999999999
Q ss_pred CCCCCCcc--cHHHHHHHHHHHHHHhhC---CeEEEcC---CCC---HHHHHHHHHHHHHHHhhhc
Q psy16874 164 GFGDERYE--QTDFQRKVAENYEKLKDN---IWIDIDA---DKD---IDTLGLIVKDIVIDTIKKS 218 (227)
Q Consensus 164 ~~r~~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~---~~s---~~~v~~~I~~~i~~~l~~~ 218 (227)
.. +.++ +.++++++.+.|.++... .+++||+ +++ ++++.++|.++|...++++
T Consensus 143 ~~--~~~e~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~ 206 (209)
T PRK13976 143 DK--NGYEFMDLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDK 206 (209)
T ss_pred cc--cchhcccHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 64 3344 589999999999999864 5889998 445 9999999999998888553
No 5
>PRK13973 thymidylate kinase; Provisional
Probab=100.00 E-value=5.1e-31 Score=209.60 Aligned_cols=192 Identities=22% Similarity=0.266 Sum_probs=162.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhc--CCCCHHHHHHHHHhhhhhhhh-
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK--IELPDQAAHLLFSANRWEREP- 83 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 83 (227)
+|++|+|+|++||||||+++.|+++|...|+++..+++|+ +.+.++.+++++..+ ..+.+....++|+++|+.+..
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~-~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~ 80 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG-GSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEE 80 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC-CCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999997 677899999887753 346778888999999998864
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHHHHH
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEEALQ 160 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e~~~ 160 (227)
.+.+++.+|.+||+ |||++|+++|++...+.+..|+..+. ...+.||++|||++|++++.
T Consensus 81 ~i~~~l~~g~~Vi~-----------------DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~ 143 (213)
T PRK13973 81 VIRPALARGKIVLC-----------------DRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGL 143 (213)
T ss_pred HHHHHHHCCCEEEE-----------------cchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHH
Confidence 68999999999999 99999999999876566656665543 34578999999999999999
Q ss_pred HhcCCCC-----CCcc--cHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 161 RRKGFGD-----ERYE--QTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 161 ~R~~~r~-----~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
+|+..|. +.++ +.++++++.+.|....+. .+++||++++++++.++|.+.+...+.
T Consensus 144 ~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 144 ERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred HHHHhccCCCccCchhhchHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 9986653 2444 367888899999888752 688999999999999999999987765
No 6
>PRK07933 thymidylate kinase; Validated
Probab=99.98 E-value=7.4e-31 Score=208.33 Aligned_cols=186 Identities=25% Similarity=0.363 Sum_probs=154.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC-CCCchHHHHHHHhhcC---CCCHHHHHHHHHhhhhhhhhH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR-TISTGHIIDEYLRKKI---ELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 84 (227)
|+|+|+|++||||||+++.|+++|...|+++..+++|.. +++.++.+++++.... ........++|+++|+.+...
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~ 80 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDE 80 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHH
Confidence 589999999999999999999999999999999999852 5677888888876431 235677788999999998888
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCC-----CChhhhhcccC---CCCCCCEEEEeecCH
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG-----MDISWCFQPEK---GLPKPDAVLLFKLNE 156 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~pd~vi~L~~~~ 156 (227)
+.+++.+|.+||+ |||++|+++|+....+ ....|+..+.. ..+.||++|||++||
T Consensus 81 I~p~l~~g~~VI~-----------------DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~ 143 (213)
T PRK07933 81 LAGLLAAHDVVIL-----------------DRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPV 143 (213)
T ss_pred HHHHHhCCCEEEE-----------------CCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCH
Confidence 9999999999999 9999999999865422 23456655542 456899999999999
Q ss_pred HHHHHhcCCCC--------CCccc-HHHHHHHHHHHHHHhhC----CeEEEcCCCCHHHHHHHHHHHH
Q psy16874 157 EALQRRKGFGD--------ERYEQ-TDFQRKVAENYEKLKDN----IWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 157 e~~~~R~~~r~--------~~~~~-~~~~~~~~~~~~~~~~~----~~~~Id~~~s~~~v~~~I~~~i 211 (227)
+++.+|+..|+ +.++. .++++++.+.|..+... .+++||++++++++.++|.+.|
T Consensus 144 e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 144 ELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred HHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 99999987653 34554 78999999999998753 7899999999999999998875
No 7
>PRK13974 thymidylate kinase; Provisional
Probab=99.97 E-value=1.9e-28 Score=194.70 Aligned_cols=193 Identities=26% Similarity=0.406 Sum_probs=160.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC-----CeEEeeCCCCCCCchHHHHHHHhhc--C-CCCHHHHHHHHHhhh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI-----PSQFVNFPDRTISTGHIIDEYLRKK--I-ELPDQAAHLLFSANR 78 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~ 78 (227)
+|.+|+|+|++||||||+++.|++.+...|. .+..+++|. +.+.|+.+++++... . ...+....++|+++|
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~-~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr 80 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPG-GTLLGKSLRELLLDTSKDNSPSPLAELLLYAADR 80 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCC-CCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHH
Confidence 4889999999999999999999999987664 566688886 788999999998642 2 345677888999999
Q ss_pred hhhhh-HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeec
Q psy16874 79 WEREP-TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKL 154 (227)
Q Consensus 79 ~~~~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~ 154 (227)
++++. .+.+.+..|.+||+ |||++|+++|.+..++.+.+|+..+. ...+.||++|||++
T Consensus 81 ~~~~~~~i~~~l~~g~~Vi~-----------------DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~ 143 (212)
T PRK13974 81 AQHVSKIIRPALENGDWVIS-----------------DRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEI 143 (212)
T ss_pred HHHHHHHHHHHHHCCCEEEE-----------------cCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeC
Confidence 99876 57899999999999 99999999998876677777776653 23458999999999
Q ss_pred CHHHHHHhcCCCC-CCccc--HHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 155 NEEALQRRKGFGD-ERYEQ--TDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 155 ~~e~~~~R~~~r~-~~~~~--~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
|++++.+|+..|. +.++. .++++++...|+.+... .+++||++++++++.++|.+.|.+.+..
T Consensus 144 ~~~~~~~R~~~R~dD~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~ 210 (212)
T PRK13974 144 SVEESIRRRKNRKPDRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSN 210 (212)
T ss_pred CHHHHHHHHHhcccCchhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999987654 33443 67888999999888765 7899999999999999999999876654
No 8
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.97 E-value=2.2e-29 Score=196.28 Aligned_cols=177 Identities=32% Similarity=0.508 Sum_probs=148.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-hHHHHHHHc
Q psy16874 13 FEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-PTLTKLIEQ 91 (227)
Q Consensus 13 i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 91 (227)
|+|++||||||+++.|+++|...++.+.....| .+.+.|+.+++++.+..........++|.+++..+. ..+.+++.+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~-~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~ 79 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPP-GSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKR 79 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESS-TSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCC-CCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 799999999999999999999999985555545 478889999999987777788889999999996654 588999999
Q ss_pred CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC--CCCEEEEeecCHHHHHHhcCCCCC-
Q psy16874 92 GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP--KPDAVLLFKLNEEALQRRKGFGDE- 168 (227)
Q Consensus 92 ~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~L~~~~e~~~~R~~~r~~- 168 (227)
|.+||| |||++|+++|+....+.+..|+..+....+ .||++|||++||+++.+|+..|+.
T Consensus 80 g~~VI~-----------------DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~ 142 (186)
T PF02223_consen 80 GKIVIC-----------------DRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEK 142 (186)
T ss_dssp TSEEEE-----------------ESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSST
T ss_pred CCEEEE-----------------echhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCcc
Confidence 999999 999999999998864466677766654433 999999999999999999977655
Q ss_pred ---CcccHHHHHHHHHHHHHHhh--CCeEEEcCCCCHHHHHHHH
Q psy16874 169 ---RYEQTDFQRKVAENYEKLKD--NIWIDIDADKDIDTLGLIV 207 (227)
Q Consensus 169 ---~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~s~~~v~~~I 207 (227)
..+..++++++++.|.++.+ ++|++||++.+++++.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 143 DDEEEEDLEYLRRVREAYLELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 23348899999999999985 3899999999999998876
No 9
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.96 E-value=5e-28 Score=191.21 Aligned_cols=191 Identities=26% Similarity=0.373 Sum_probs=154.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhh-hH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWERE-PT 84 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~ 84 (227)
++++|+|+|++||||||+++.|++.++..|..+...++|. +.+.++.++..+.. ......+...+++.++++... ..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPG-GTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEV 80 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCC-CChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998887777788886 56778888887764 334566677777788887765 46
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC---CCCCCCEEEEeecCHHHHHH
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pd~vi~L~~~~e~~~~ 161 (227)
+.+.+.+|.+||+ |||+++++++.....+.+..|+..+.. ..+.||++|||++|++++.+
T Consensus 81 i~~~l~~g~~vi~-----------------DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~ 143 (205)
T PRK00698 81 IKPALARGKWVIS-----------------DRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLA 143 (205)
T ss_pred HHHHHHCCCEEEE-----------------CCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHH
Confidence 7778888999999 999999999987655566677765542 33789999999999999999
Q ss_pred hcCCCC--CCcc--cHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 162 RKGFGD--ERYE--QTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 162 R~~~r~--~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
|+..|+ +.++ ..++++++.+.|+.+... .+++||++++++++.++|.+.|...+
T Consensus 144 Rl~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 144 RIRARGELDRIEQEGLDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred HHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 998765 2332 357888898889888743 68999999999999999999998765
No 10
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.96 E-value=3.7e-27 Score=185.03 Aligned_cols=183 Identities=31% Similarity=0.457 Sum_probs=146.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh--cCCCCHHHHHHHHHhhhhhhh-h
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK--KIELPDQAAHLLFSANRWERE-P 83 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~ 83 (227)
+|++|+|+|+|||||||+++.|+++++..|+.+..+..|. +.+.++.+++++.. ...+.+....++|.++|.... .
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~ 80 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPG-GTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLED 80 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999887777775 66778888887543 234555666777888887654 4
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC--CCCEEEEeecCHHHHHH
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP--KPDAVLLFKLNEEALQR 161 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~L~~~~e~~~~ 161 (227)
.+.+.+.++.+||+ |||++++++|....++.+..|+..+....+ .||++|||++|++++.+
T Consensus 81 ~i~~~l~~~~~VI~-----------------DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~ 143 (195)
T TIGR00041 81 KIKPALAEGKLVIS-----------------DRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALE 143 (195)
T ss_pred HHHHHHhCCCEEEE-----------------CCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHH
Confidence 67788888999999 999999999976544666677766554333 49999999999999999
Q ss_pred hcCCCCCC----cccHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHH
Q psy16874 162 RKGFGDER----YEQTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIV 207 (227)
Q Consensus 162 R~~~r~~~----~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I 207 (227)
|+..|+.. .+..++++++.+.|.++.+. ++++||++++++++.++|
T Consensus 144 R~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 144 RLRKRGELDREEFEKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 98766431 33477889999999999873 899999999999988764
No 11
>PRK13975 thymidylate kinase; Provisional
Probab=99.94 E-value=1.7e-25 Score=175.72 Aligned_cols=183 Identities=32% Similarity=0.486 Sum_probs=145.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
+++|+|+|++||||||+++.|++.++.. ...+|. +...|..+++++... ...+....++|.++++.+++.+.+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~-----~~~~~~-~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i~~ 74 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF-----WTCEPT-DGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEIEE 74 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-----eeECCC-CChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999752 223353 556788888887654 556777788888899888777777
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
.+.. ..|++ |||++|+++|+... +....|+..+....+.||++|||++|++++.+|+..|+
T Consensus 75 ~~~~-~~vi~-----------------DRy~~S~~a~~~~~-g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 75 DLKK-RDVVC-----------------DRYVYSSIAYQSVQ-GIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred HHcC-CEEEE-----------------ECchhHHHHHhccc-CCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 7655 66888 99999999998765 66667765555555689999999999999999998764
Q ss_pred -CCcccHHHHHHHHHHHHHHhh------C-CeEEEcCC-CCHHHHHHHHHHHHHHHhh
Q psy16874 168 -ERYEQTDFQRKVAENYEKLKD------N-IWIDIDAD-KDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~------~-~~~~Id~~-~s~~~v~~~I~~~i~~~l~ 216 (227)
+.+++.++++++.+.|.++.. . .+++||++ +++++++++|.+.|...+.
T Consensus 136 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~ 193 (196)
T PRK13975 136 KEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIP 193 (196)
T ss_pred ccccchHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 335567888889988888764 1 58999986 8999999999998876554
No 12
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.94 E-value=4.2e-25 Score=173.38 Aligned_cols=186 Identities=26% Similarity=0.350 Sum_probs=146.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC--CCCHHHHHHHHHhhhhhhhh-HH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI--ELPDQAAHLLFSANRWEREP-TL 85 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~i 85 (227)
++|+|+|++||||||+++.|++.+...|+.+..+.+|. ....++.+++++.... .+.......++.+++..... .+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 79 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG-GTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVI 79 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999998888886 4456788888877542 34556666677777777654 56
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhh---cccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCF---QPEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
.+.+..+..|++ |||++++.++.....+....|+. .+....+.||++|||++|++++.+|
T Consensus 80 ~~~~~~~~~vi~-----------------DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R 142 (200)
T cd01672 80 KPALARGKIVLS-----------------DRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLAR 142 (200)
T ss_pred HHHHhCCCEEEE-----------------CCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHH
Confidence 677788999999 99999999998665333333333 3344556899999999999999999
Q ss_pred cCCCCCCc----ccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 163 KGFGDERY----EQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 163 ~~~r~~~~----~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
+.+|++.. ...++++++...|...... ++++||++.+++++.++|.+.|.
T Consensus 143 ~~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 143 IEARGRDDRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred HHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 98765432 2377888999889887753 68999999999999999998875
No 13
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.90 E-value=5.1e-23 Score=164.34 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=125.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE-----EeeCCCCCCCchH------HHHHHHhhcC---CCCHHHHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ-----FVNFPDRTISTGH------IIDEYLRKKI---ELPDQAAHLLFS 75 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~-----~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~ 75 (227)
+|+|+|++||||||+++.|+++++..+++.. ...+|. +...++ .++.++.++. .+.......++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~- 78 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGD-GKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMY- 78 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhcccccccc-ccccccccCCCcCHHHHhcCCcccCCcchHHHHHHH-
Confidence 5899999999999999999999976544332 123332 233333 3666776544 34444444444
Q ss_pred hhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhcc------CCCChhhhhcc----cCCCC
Q psy16874 76 ANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK------EGMDISWCFQP----EKGLP 144 (227)
Q Consensus 76 ~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~ 144 (227)
++|..+. +.+.+.+..|..||+ |||++|+++|+... .+....|+..+ ....+
T Consensus 79 ~~R~~~~~~~i~~~l~~g~~VI~-----------------DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~ 141 (219)
T cd02030 79 SSRLLQYSDALEHLLSTGQGVVL-----------------ERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELL 141 (219)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEE-----------------ecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccC
Confidence 6777764 466777888888999 99999999997421 12223444333 23457
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHh-----hC-CeEEEcCC--CCHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLK-----DN-IWIDIDAD--KDIDTLGLIVK 208 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~-----~~-~~~~Id~~--~s~~~v~~~I~ 208 (227)
.||++|||++|++++.+|+..|+...+ +.++++++.+.|+.+. .. ++++||++ .+.+++..+|.
T Consensus 142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~ 216 (219)
T cd02030 142 PPHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIE 216 (219)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHH
Confidence 899999999999999999977654432 3789999999998874 12 89999988 77777766654
No 14
>PRK13808 adenylate kinase; Provisional
Probab=99.86 E-value=1e-20 Score=157.61 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=124.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
-|+|.|+|||||||++..|++.++..+++++. +++ ...+.+.+..+.+++.++..++++... ..+.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~-----------~li~e 70 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVV-----------GIISD 70 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHH-----------HHHHH
Confidence 48999999999999999999999999998866 543 223566788888888888888887765 34444
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGFG 166 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~r 166 (227)
.+... .+.+|||+| +||++..|. ..+..+ ......||++|+|++|++++.+|+..|
T Consensus 71 ~l~~~--------------~~~~G~ILD-----GFPRt~~QA----~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 71 RIEQP--------------DAANGFILD-----GFPRTVPQA----EALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred HHhcc--------------cccCCEEEe-----CCCCCHHHH----HHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 44331 235678889 888887763 333222 233458999999999999999999764
Q ss_pred C---------CCcc-cHH-HHHHHHHHHHHHh-------hC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 167 D---------ERYE-QTD-FQRKVAENYEKLK-------DN--IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 167 ~---------~~~~-~~~-~~~~~~~~~~~~~-------~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
. .+.+ +.+ +.+++ ..|+... .. .++.||+++++++|+++|...|..++..
T Consensus 128 ~~~~~~rg~~~R~DD~~E~i~kRL-~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~ 197 (333)
T PRK13808 128 VAEMRARGEEVRADDTPEVLAKRL-ASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAA 197 (333)
T ss_pred cccccccCCccCCCCCHHHHHHHH-HHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence 1 1222 233 33444 5555542 12 5899999999999999999999877654
No 15
>KOG3079|consensus
Probab=99.85 E-value=4.9e-21 Score=144.11 Aligned_cols=172 Identities=20% Similarity=0.269 Sum_probs=122.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CC-CCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhh
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DR-TISTGHIIDEYLRKKIELPDQAAHLLFSANRWER 81 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
...+++|+|.|.|||||.|+|..+.+.+++.|++++. ++.. .. ++..|..+++++.+|..+|.+...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~---------- 74 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITL---------- 74 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHH----------
Confidence 3568899999999999999999999999999999976 5542 22 778899999999999999987766
Q ss_pred hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC-CCCEEEEeecCHHHHH
Q psy16874 82 EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP-KPDAVLLFKLNEEALQ 160 (227)
Q Consensus 82 ~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pd~vi~L~~~~e~~~ 160 (227)
..+..++.+. ...++|++| |||++..+. ..|.+... .|++++|++|+.+++.
T Consensus 75 -~LL~~am~~~--------------~~~~~fLID-----GyPR~~~q~-------~~fe~~i~~~~~fvl~fdc~ee~~l 127 (195)
T KOG3079|consen 75 -SLLEEAMRSS--------------GDSNGFLID-----GYPRNVDQL-------VEFERKIQGDPDFVLFFDCPEETML 127 (195)
T ss_pred -HHHHHHHHhc--------------CCCCeEEec-----CCCCChHHH-------HHHHHHhcCCCCEEEEEeCCHHHHH
Confidence 3344443321 111224447 999877662 22333333 6899999999999999
Q ss_pred HhcCCCCCC---cc-cHHHHHHHHHHHHHHh-------hC--CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 161 RRKGFGDER---YE-QTDFQRKVAENYEKLK-------DN--IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 161 ~R~~~r~~~---~~-~~~~~~~~~~~~~~~~-------~~--~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
+|+..|+.. .. +.+..+...+.|.+.. +. .++.||+++++++|+.++...++.
T Consensus 128 ~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 128 KRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 999655322 22 2333333333333322 22 788999999999999999998864
No 16
>PRK14532 adenylate kinase; Provisional
Probab=99.85 E-value=8.8e-21 Score=148.04 Aligned_cols=169 Identities=16% Similarity=0.161 Sum_probs=117.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
.|+|.|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++..+..+++.... ..+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~ 70 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVI-----------ALIEE 70 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHH-----------HHHHH
Confidence 48999999999999999999999998888855 5442 12456677788888888877776554 23333
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGFG 166 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~r 166 (227)
.+... ..++|+|+| +||++..++ ..+.. +......||++|+|++|++++.+|+..|
T Consensus 71 ~~~~~--------------~~~~g~vld-----g~pr~~~q~----~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R 127 (188)
T PRK14532 71 RLPEA--------------EAAGGAIFD-----GFPRTVAQA----EALDKMLASRGQKIDVVIRLKVDDEALIERIVKR 127 (188)
T ss_pred HHhCc--------------CccCcEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 33211 235667779 777766652 22222 2233457999999999999999999765
Q ss_pred C---CCcc--cHHHHHHHHHHHHHHh-------h-CCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 167 D---ERYE--QTDFQRKVAENYEKLK-------D-NIWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 167 ~---~~~~--~~~~~~~~~~~~~~~~-------~-~~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
. ++.+ ...+.+++...|+... . +.++.||+++++++++++|.+.|.
T Consensus 128 ~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 128 FEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred cCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 2 2232 2455666666554432 1 158899999999999999998875
No 17
>PLN02674 adenylate kinase
Probab=99.85 E-value=9.9e-21 Score=152.00 Aligned_cols=172 Identities=16% Similarity=0.152 Sum_probs=123.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+.++.|+|.|+|||||||+++.|+++++..|++++. +++. ..+++.|..+++++..|..+++.... .
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~-----------~ 97 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G 97 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHH-----------H
Confidence 445779999999999999999999999999999876 5442 23667888899999999999997766 4
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHh
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
.+.+.+... .+.+|||+| |||++..++ ..+..+ ......||.+|+|++|.+++.+|
T Consensus 98 lv~~~l~~~--------------~~~~g~ilD-----GfPRt~~Qa----~~l~~~l~~~~~~~d~vi~l~v~~~~l~~R 154 (244)
T PLN02674 98 IIDEAMKKP--------------SCQKGFILD-----GFPRTVVQA----QKLDEMLAKQGAKIDKVLNFAIDDAILEER 154 (244)
T ss_pred HHHHHHhCc--------------CcCCcEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 444454432 345788889 999887773 333222 22334799999999999999999
Q ss_pred cCCCC------C------------------------Ccc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHH
Q psy16874 163 KGFGD------E------------------------RYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDT 202 (227)
Q Consensus 163 ~~~r~------~------------------------~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~ 202 (227)
+..|. . +.. +.+..++-.+.|..... +.++.||+++++++
T Consensus 155 l~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~e 234 (244)
T PLN02674 155 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKE 234 (244)
T ss_pred HhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHH
Confidence 86541 0 111 13333333334433321 15899999999999
Q ss_pred HHHHHHHHH
Q psy16874 203 LGLIVKDIV 211 (227)
Q Consensus 203 v~~~I~~~i 211 (227)
|+++|..+|
T Consensus 235 V~~~i~~~l 243 (244)
T PLN02674 235 VTAEVQKAL 243 (244)
T ss_pred HHHHHHHHh
Confidence 999998775
No 18
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.85 E-value=1.5e-20 Score=145.95 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCC-CCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPD-RTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
+|+|+|+|||||||+|+.|+++++..++++.. +++.. .+.+.+..+++++.++..+++.... ..+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ll~~ 69 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTV-----------KLLKN 69 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHH-----------HHHHH
Confidence 48999999999999999999999988888744 55431 2455677788888888877776654 23333
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
.+... . .++||+| ++|++..+. ..+..+......||++|+|++|++++.+|+..|.
T Consensus 70 ~~~~~--------------~-~~~~vlD-----g~p~~~~q~----~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~ 125 (183)
T TIGR01359 70 AIQAD--------------G-SKKFLID-----GFPRNEENL----EAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRG 125 (183)
T ss_pred HHhcc--------------C-CCcEEEe-----CCCCCHHHH----HHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCC
Confidence 33221 1 3345558 666554431 2222222233479999999999999999997764
Q ss_pred C---Ccc-cHHHHHHHHHHHHHHh--------hC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874 168 E---RYE-QTDFQRKVAENYEKLK--------DN-IWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 168 ~---~~~-~~~~~~~~~~~~~~~~--------~~-~~~~Id~~~s~~~v~~~I~~~i 211 (227)
. +.+ +.+.+++....|.... .. .+++||+++++++++++|.+++
T Consensus 126 ~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 126 QSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 2 122 2444444444554432 12 5899999999999999988765
No 19
>PLN02200 adenylate kinase family protein
Probab=99.85 E-value=3e-20 Score=149.44 Aligned_cols=177 Identities=18% Similarity=0.168 Sum_probs=118.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+.+++|+|.|+|||||||+|+.|++.++..++++.. +++. ....+.+..+.+++..+..+++.... .
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~-----------~ 109 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTV-----------K 109 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHH-----------H
Confidence 356789999999999999999999999988888755 4432 22345566677777777777775544 2
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
.+...+... ..+|||+| ++|+...++ ..+..+. ...||++|+|++|++++.+|+
T Consensus 110 ~l~~~l~~~---------------~~~~~ILD-----G~Prt~~q~----~~l~~~~--~~~pd~vi~Ld~~~e~~~~Rl 163 (234)
T PLN02200 110 LIQKEMESS---------------DNNKFLID-----GFPRTEENR----IAFERII--GAEPNVVLFFDCPEEEMVKRV 163 (234)
T ss_pred HHHHHHhcC---------------CCCeEEec-----CCcccHHHH----HHHHHHh--ccCCCEEEEEECCHHHHHHHH
Confidence 233233211 12456668 666554431 1121111 236999999999999999999
Q ss_pred CCCC-CCcc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHHHHHHHHHhhhcC
Q psy16874 164 GFGD-ERYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIVKDIVIDTIKKSQ 219 (227)
Q Consensus 164 ~~r~-~~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~ 219 (227)
..|. .+.+ +.+.+++..+.|..... +.++.||+++++++|++.|.+.+...++-+.
T Consensus 164 ~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~~~~ 230 (234)
T PLN02200 164 LNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEAMKE 230 (234)
T ss_pred HcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCCccc
Confidence 7663 2333 34555555555554421 1589999999999999999999987765443
No 20
>PRK14531 adenylate kinase; Provisional
Probab=99.84 E-value=6.7e-20 Score=142.48 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=109.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
.|+|+|+|||||||+++.|++.++..++++.. +++. ..+.+.+..++.++..|..+++..... .+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~-----------~~~~ 72 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLA-----------IVES 72 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHH-----------HHHH
Confidence 59999999999999999999999999998855 5432 125567777888888887777766552 2222
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGFG 166 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~r 166 (227)
.+.. ...+|+|+| +||++..++ ..+..+ ......|+.+|+|++|++++.+|+..|
T Consensus 73 ~l~~---------------~~~~g~ilD-----Gfpr~~~q~----~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R 128 (183)
T PRK14531 73 QLKA---------------LNSGGWLLD-----GFPRTVAQA----EALEPLLEELKQPIEAVVLLELDDAVLIERLLAR 128 (183)
T ss_pred HHhh---------------ccCCcEEEe-----CCCCCHHHH----HHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC
Confidence 2221 113456668 777766552 212221 222336789999999999999999765
Q ss_pred CCCcccHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHHHHHH
Q psy16874 167 DERYEQTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I~~~i 211 (227)
+..-.+.+.+..-.+.|+.... +.++.||+++++++|+.+|.+.|
T Consensus 129 ~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 129 GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 3221122222222222222211 16899999999999999998765
No 21
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.84 E-value=4.7e-20 Score=144.49 Aligned_cols=166 Identities=23% Similarity=0.281 Sum_probs=111.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC-CCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR-TISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
+|+|+|++||||||+++.|+++++. ..+.+|.. ....+..++.++.+... ........+..+|+.+.......
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~-----~~~~Ep~~~~~~~~~~l~~~~~~~~~-~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY-----EVVPEPVEPDVEGNPFLEKFYEDPKR-WAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-----ccccccccccCCCCCCHHHHHhCHHh-ccHHHHHHHHHHHHHHHHHHHhh
Confidence 4899999999999999999998632 33455531 01112335566654322 22233444556677665433222
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhcc--CC-C---Chhhh----hcccCCCCCCCEEEEeecCHHH
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK--EG-M---DISWC----FQPEKGLPKPDAVLLFKLNEEA 158 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~--~~-~---~~~~~----~~~~~~~~~pd~vi~L~~~~e~ 158 (227)
+..+.+||+ |||++|.+++.... .+ . +..++ ..+....+.||++|||++|+++
T Consensus 75 ~~~~~~vI~-----------------DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~ 137 (193)
T cd01673 75 LSTGQGVIL-----------------ERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPET 137 (193)
T ss_pred cccCCceEE-----------------EcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHH
Confidence 567888988 99999998776432 11 1 12222 2223345789999999999999
Q ss_pred HHHhcCCCCCCcc---cHHHHHHHHHHHHHHhhC------CeEEEcCCC
Q psy16874 159 LQRRKGFGDERYE---QTDFQRKVAENYEKLKDN------IWIDIDADK 198 (227)
Q Consensus 159 ~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~~------~~~~Id~~~ 198 (227)
+.+|+.+|++..+ +.++++.+...|+.+... ++++||+++
T Consensus 138 ~~~Ri~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~ 186 (193)
T cd01673 138 CLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANE 186 (193)
T ss_pred HHHHHHhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEECCc
Confidence 9999987654433 378999999999988752 899999985
No 22
>PRK02496 adk adenylate kinase; Provisional
Probab=99.83 E-value=7.1e-20 Score=142.45 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
+.|+|.|+|||||||+++.|++.++..+++++. +++ ...+.+.+..++.++.++..+++.... ..+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~-----------~~l~ 70 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVL-----------DLVQ 70 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHH-----------HHHH
Confidence 458999999999999999999999887776643 332 112455566677777777777776544 3344
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc-CCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE-KGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
..+.+. .+..|||+| |||++..+. ..+..+. .....|+++|+|++|++++.+|+..
T Consensus 71 ~~l~~~--------------~~~~g~vld-----GfPr~~~q~----~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~ 127 (184)
T PRK02496 71 ERLQQP--------------DAANGWILD-----GFPRKVTQA----AFLDELLQEIGQSGERVVNLDVPDDVVVERLLA 127 (184)
T ss_pred HHHhCc--------------CccCCEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhc
Confidence 443321 223567778 787765542 2222221 2234689999999999999999987
Q ss_pred CCCCcccHHHHHHHHHHHHH-------HhhC--CeEEEcCCCCHHHHHHHHHHHH
Q psy16874 166 GDERYEQTDFQRKVAENYEK-------LKDN--IWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~Id~~~s~~~v~~~I~~~i 211 (227)
|+......+.+++..+.|.. .... .++.||+++++++|+++|...|
T Consensus 128 R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 128 RGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 65433345666666666665 2222 5899999999999999998776
No 23
>PRK14529 adenylate kinase; Provisional
Probab=99.83 E-value=2.7e-19 Score=142.10 Aligned_cols=167 Identities=20% Similarity=0.212 Sum_probs=119.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
.|+|+|+|||||||+++.|++.++..++++.. +++. ..+.+.+..+++++.++..+++.... ..+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~-----------~lv~~ 70 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITI-----------PMILE 70 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHH-----------HHHHH
Confidence 48999999999999999999999999998866 5552 33678889999999999988887766 44555
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGFG 166 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~r 166 (227)
.+... . .+|||+| |||++..|+ ..+..+ ......||.+|+|++|.+++.+|+..|
T Consensus 71 ~l~~~--------------~-~~g~iLD-----GfPRt~~Qa----~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R 126 (223)
T PRK14529 71 TLKQD--------------G-KNGWLLD-----GFPRNKVQA----EKLWEALQKEGMKLDYVIEILLPREVAKNRIMGR 126 (223)
T ss_pred HHhcc--------------C-CCcEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCC
Confidence 55432 2 5677888 999998874 333222 223357999999999999999998654
Q ss_pred C------C--------------------------Cccc--HHHHHHHHHHHHHH----------hh-------CCeEEEc
Q psy16874 167 D------E--------------------------RYEQ--TDFQRKVAENYEKL----------KD-------NIWIDID 195 (227)
Q Consensus 167 ~------~--------------------------~~~~--~~~~~~~~~~~~~~----------~~-------~~~~~Id 195 (227)
. . +..+ .+..++-.+.|.+. .. +.++.||
T Consensus 127 ~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id 206 (223)
T PRK14529 127 RLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELD 206 (223)
T ss_pred ccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEE
Confidence 1 0 1111 22333333334331 11 2589999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy16874 196 ADKDIDTLGLIVKDIV 211 (227)
Q Consensus 196 ~~~s~~~v~~~I~~~i 211 (227)
+++++++|++.|.+.|
T Consensus 207 ~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 207 GEGSIDEIKETLLKQL 222 (223)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998875
No 24
>PRK14527 adenylate kinase; Provisional
Probab=99.83 E-value=3.3e-19 Score=139.50 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=116.2
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR 78 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|.. ++|++|+|.|+|||||||+++.|++.++..+++++. ++. ...+.+.+..++.++.++..+++....
T Consensus 1 ~~~--~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~------- 71 (191)
T PRK14527 1 MTQ--TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELIL------- 71 (191)
T ss_pred CCC--CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHH-------
Confidence 445 678999999999999999999999999999998855 332 122455666777777777776765433
Q ss_pred hhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc-CCCCCCCEEEEeecCHH
Q psy16874 79 WEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE-KGLPKPDAVLLFKLNEE 157 (227)
Q Consensus 79 ~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pd~vi~L~~~~e 157 (227)
..+.+.+... ...++|+| +||++..++ .++..+. .....++.+|+|++|++
T Consensus 72 ----~l~~~~l~~~---------------~~~~~VlD-----Gfpr~~~q~----~~~~~~~~~~g~~~~~vi~l~~~~~ 123 (191)
T PRK14527 72 ----ALIRDELAGM---------------EPVRVIFD-----GFPRTLAQA----EALDRLLEELGARLLAVVLLEVPDE 123 (191)
T ss_pred ----HHHHHHHhcC---------------CCCcEEEc-----CCCCCHHHH----HHHHHHHHHcCCCCCEEEEEECCHH
Confidence 2333333321 11345568 777655442 2232222 23346888999999999
Q ss_pred HHHHhcCCCCC---Ccc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHHHHHH
Q psy16874 158 ALQRRKGFGDE---RYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 158 ~~~~R~~~r~~---~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I~~~i 211 (227)
++.+|+..|.. +.+ +.+.+.+..+.|..... +.++.||+++++++|+++|...|
T Consensus 124 ~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 124 ELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 99999977642 222 24444444445544432 15899999999999999998765
No 25
>PLN02459 probable adenylate kinase
Probab=99.81 E-value=3.1e-19 Score=144.09 Aligned_cols=170 Identities=19% Similarity=0.191 Sum_probs=121.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++.|+|.|+|||||||+|+.|++.++..++++.. +++ ...+++.|..++.++.+|..+++.... ..+
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~-----------~ll 97 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIF-----------SLL 97 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHH-----------HHH
Confidence 4678889999999999999999999999999866 443 223667888999999999999998776 344
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
...+.+.. ....+|||+| |||++..|+ ..+.. ...++.+|+|++|.+++.+|+..
T Consensus 98 ~~~l~~~~------------~~~~~g~iLD-----GFPRt~~Qa----~~Le~----~~~id~Vi~L~v~d~~l~~Rl~g 152 (261)
T PLN02459 98 SKRLEAGE------------EEGESGFILD-----GFPRTVRQA----EILEG----VTDIDLVVNLKLREEVLVEKCLG 152 (261)
T ss_pred HHHHhccc------------ccCCceEEEe-----CCCCCHHHH----HHHHh----cCCCCEEEEEECCHHHHHHHhhc
Confidence 44443310 1235677889 999988773 22321 23689999999999999999975
Q ss_pred CC------C-----------------------------------Ccc-cHHHHHHHHHHHHHHhh---------CCeEEE
Q psy16874 166 GD------E-----------------------------------RYE-QTDFQRKVAENYEKLKD---------NIWIDI 194 (227)
Q Consensus 166 r~------~-----------------------------------~~~-~~~~~~~~~~~~~~~~~---------~~~~~I 194 (227)
|. . +.. +.+..++-.+.|.+... ..++.|
T Consensus 153 R~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~i 232 (261)
T PLN02459 153 RRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEF 232 (261)
T ss_pred cccccccCccccccccccccccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEE
Confidence 42 0 001 13333333334433322 168999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy16874 195 DADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 195 d~~~s~~~v~~~I~~~i~~ 213 (227)
|+++++++|+++|...|..
T Consensus 233 d~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 233 ELPGGIPETWPRLLQALNL 251 (261)
T ss_pred eCCCCHHHHHHHHHHHhch
Confidence 9999999999999999863
No 26
>PRK14528 adenylate kinase; Provisional
Probab=99.80 E-value=7.5e-19 Score=136.86 Aligned_cols=168 Identities=16% Similarity=0.168 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
+.|+|.|+|||||||+++.|++.++..+++++. ++.. ..+.+++..++.++..+..+++.... ..+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~-----------~~~~ 70 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVI-----------GIIK 70 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHH-----------HHHH
Confidence 358999999999999999999999988887765 3331 22456677778888888777776443 3333
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
+.+... ...+|||+| ++|++..+. ..+..+ ......||.+|+|++|++++.+|+..
T Consensus 71 ~~l~~~--------------~~~~g~viD-----G~Pr~~~qa----~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~ 127 (186)
T PRK14528 71 DRIREA--------------DCKNGFLLD-----GFPRTVEQA----DALDALLKNEGKSIDKAINLEVPDGELLKRLLG 127 (186)
T ss_pred HHHhCc--------------CccCcEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhc
Confidence 343321 123567778 777766552 223222 22345799999999999999999976
Q ss_pred CC---CCcc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHHHHH
Q psy16874 166 GD---ERYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIVKDI 210 (227)
Q Consensus 166 r~---~~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I~~~ 210 (227)
|. .+.. +.+.+.+-.+.|..... +.++.||+++++++|++.|...
T Consensus 128 R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 128 RAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred CccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 52 1111 23333322223333221 1699999999999999988765
No 27
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.80 E-value=1e-18 Score=139.21 Aligned_cols=170 Identities=19% Similarity=0.155 Sum_probs=113.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
.|+|.|+|||||||+++.|++.++..++++.. +++ ...+.+.+..+++++.++..+++.... ..+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~-----------~~i~~ 70 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVI-----------GLVKE 70 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHH-----------HHHHH
Confidence 59999999999999999999999998888755 443 223456777888888888777776654 34444
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGFG 166 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~r 166 (227)
.+... .+.+|||+| +||++..++ ..+.++ ......|+.+|+|++|.+++.+|+..|
T Consensus 71 ~l~~~--------------~~~~g~VlD-----GfPr~~~qa----~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R 127 (215)
T PRK00279 71 RLAQP--------------DCKNGFLLD-----GFPRTIPQA----EALDEMLKELGIKLDAVIEIDVPDEELVERLSGR 127 (215)
T ss_pred HHhcc--------------CccCCEEEe-----cCCCCHHHH----HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCC
Confidence 44331 233477779 777665542 222222 222346889999999999999999765
Q ss_pred CC------------------------------Ccc-cHHHHHHHHHHHHHHh-------hC--CeEEEcCCCCHHHHHHH
Q psy16874 167 DE------------------------------RYE-QTDFQRKVAENYEKLK-------DN--IWIDIDADKDIDTLGLI 206 (227)
Q Consensus 167 ~~------------------------------~~~-~~~~~~~~~~~~~~~~-------~~--~~~~Id~~~s~~~v~~~ 206 (227)
.- +.. +.+.+++-...|.... .. .++.||+++++++|+++
T Consensus 128 ~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~ 207 (215)
T PRK00279 128 RICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFAD 207 (215)
T ss_pred cccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHH
Confidence 20 011 1222222222232221 11 58999999999999999
Q ss_pred HHHHHHH
Q psy16874 207 VKDIVID 213 (227)
Q Consensus 207 I~~~i~~ 213 (227)
|.+.|..
T Consensus 208 i~~~l~~ 214 (215)
T PRK00279 208 ILKALGK 214 (215)
T ss_pred HHHHHhc
Confidence 9998863
No 28
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.79 E-value=2.3e-18 Score=134.11 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=105.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
.++|+|+|+|||||||+++.|++.++..+++++. ++.. ....+.+..++.++.++..++........ ...+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~ 75 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLL-------KDAM 75 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHH
Confidence 5689999999999999999999999776666533 2221 11334455566666666555544332111 0223
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
.+.+..+..+|+ | ++++...+ ...+......|+++|+|++|++++.+|+..
T Consensus 76 ~~~~~~~~~~i~-----------------d-----g~~~~~~q-------~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~ 126 (188)
T TIGR01360 76 VAALGTSKGFLI-----------------D-----GYPREVKQ-------GEEFERRIGPPTLVLYFDCSEDTMVKRLLK 126 (188)
T ss_pred HcccCcCCeEEE-----------------e-----CCCCCHHH-------HHHHHHcCCCCCEEEEEECCHHHHHHHHHc
Confidence 223334444444 8 44443222 111222334699999999999999999976
Q ss_pred CCC---Cccc--HHHHHHHHHHHHHHh------h--CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 166 GDE---RYEQ--TDFQRKVAENYEKLK------D--NIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 166 r~~---~~~~--~~~~~~~~~~~~~~~------~--~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
|+. +.++ ..+.+++...|+... . +.++.||+++++++++++|...|+.
T Consensus 127 R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 127 RAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 542 2222 345555555443221 1 1678999999999999999998863
No 29
>PRK14526 adenylate kinase; Provisional
Probab=99.78 E-value=3.3e-18 Score=135.43 Aligned_cols=166 Identities=22% Similarity=0.202 Sum_probs=112.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
.|+|+|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++.++..+++.... ..+.+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~-----------~lv~~ 70 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITI-----------KIVED 70 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHH-----------HHHHH
Confidence 48899999999999999999999988888766 4432 23566788889999888888887654 34444
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
.+... ...+|||+| |||++..++ ..+.. .. ....+|+|++|++++.+|+..|.
T Consensus 71 ~l~~~--------------~~~~g~ilD-----GfPR~~~Qa----~~l~~---~~-~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 71 KINTI--------------KNNDNFILD-----GFPRNINQA----KALDK---FL-PNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred HHhcc--------------cccCcEEEE-----CCCCCHHHH----HHHHH---hc-CCCEEEEEECCHHHHHHHHHCCC
Confidence 44321 234567778 999887763 22221 11 22468889999999999986542
Q ss_pred --------------------------C----Ccc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHH
Q psy16874 168 --------------------------E----RYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIV 207 (227)
Q Consensus 168 --------------------------~----~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I 207 (227)
. +.. +.+..++-.+.|..... ..++.||+++++++|+++|
T Consensus 124 ~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i 203 (211)
T PRK14526 124 ICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKL 203 (211)
T ss_pred cccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHH
Confidence 0 111 13333333334433321 1589999999999999999
Q ss_pred HHHHHH
Q psy16874 208 KDIVID 213 (227)
Q Consensus 208 ~~~i~~ 213 (227)
.+.|..
T Consensus 204 ~~~l~~ 209 (211)
T PRK14526 204 IEIISK 209 (211)
T ss_pred HHHHcc
Confidence 988864
No 30
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.77 E-value=9.5e-18 Score=133.17 Aligned_cols=165 Identities=22% Similarity=0.290 Sum_probs=111.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
|+|.|+|||||||+|+.|++.++..++++.. +++. ....+.+..++.++.++..+++.... ..+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~-----------~l~~~~ 70 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVN-----------QLVKER 70 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHH-----------HHHHHH
Confidence 7899999999999999999999999988855 4432 22456677788888888888886654 344444
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC-CCCEEEEeecCHHHHHHhcCCCC
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP-KPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
+... .....|||+| +||++..++ ..+. .... .|+.+|+|++|.+++.+|+..|.
T Consensus 71 i~~~-------------~~~~~~~ilD-----GfPrt~~Qa----~~l~---~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 71 LTQN-------------QDNENGFILD-----GFPRTLSQA----EALD---ALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred HhcC-------------cccCCcEEEe-----CCCCCHHHH----HHHH---HHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 4331 0124566778 777765542 2222 1122 68999999999999999997652
Q ss_pred ------------------------------CCcc-cHHHHHHHHHHHHHHhh-------C--CeEEEcCCCCHHHHHHHH
Q psy16874 168 ------------------------------ERYE-QTDFQRKVAENYEKLKD-------N--IWIDIDADKDIDTLGLIV 207 (227)
Q Consensus 168 ------------------------------~~~~-~~~~~~~~~~~~~~~~~-------~--~~~~Id~~~s~~~v~~~I 207 (227)
.+.. +.+.+++-.+.|..... . .++.||+++++++|++.|
T Consensus 126 ~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i 205 (210)
T TIGR01351 126 ICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRI 205 (210)
T ss_pred ccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHH
Confidence 0111 12333333333333321 1 589999999999999999
Q ss_pred HHHH
Q psy16874 208 KDIV 211 (227)
Q Consensus 208 ~~~i 211 (227)
.+.|
T Consensus 206 ~~~l 209 (210)
T TIGR01351 206 LEAL 209 (210)
T ss_pred HHhh
Confidence 8876
No 31
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.77 E-value=6.3e-18 Score=135.25 Aligned_cols=125 Identities=17% Similarity=0.064 Sum_probs=90.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+.|+.|+|.|+|||||||+++.|++.++..+++++. +++. ...++.+..++++..++..+++.... .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~-----------~ 72 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVI-----------A 72 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHH-----------H
Confidence 557779999999999999999999999999988876 5542 23457788899999998888887765 2
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
.+.+.+.+- ......|||+| +||++..++ ..+. ....|+++|+|++|.+++.+|+
T Consensus 73 lv~~~l~~~------------~~~~~~g~iLD-----GfPRt~~Qa----~~l~----~~~~~~~vi~l~~~~~~~~~Rl 127 (229)
T PTZ00088 73 IVKDEIAKV------------TDDCFKGFILD-----GFPRNLKQC----KELG----KITNIDLFVNIYLPRNILIKKL 127 (229)
T ss_pred HHHHHHHhh------------ccccCceEEEe-----cCCCCHHHH----HHHH----hcCCCCEEEEEeCCHHHHHHHH
Confidence 333333220 01234567778 888877662 2221 1137999999999999999998
Q ss_pred CCC
Q psy16874 164 GFG 166 (227)
Q Consensus 164 ~~r 166 (227)
..|
T Consensus 128 ~~R 130 (229)
T PTZ00088 128 LGR 130 (229)
T ss_pred HcC
Confidence 654
No 32
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.76 E-value=1.8e-17 Score=128.01 Aligned_cols=181 Identities=21% Similarity=0.276 Sum_probs=110.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
..++|+|.|++|+||||+++.|+++++...+ .|...+. ..+..++.+...+ .......|...|.....
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~-----~E~vedn---p~L~~FY~d~~~y-af~~QiyFL~~Rfk~~k--- 70 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF-----YELVEDN---PFLDLFYEDPERY-AFLLQIYFLLNRFKKIK--- 70 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee-----eecccCC---hHHHHHHHhHHHh-hHHHHHHHHHHHHHHHH---
Confidence 4678999999999999999999999985321 2221122 4556666654442 23334445555554322
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhh-hhhh--ccCC-C---Chhhhhc-------ccCCCC-CCCEEEE
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV-AFSA--AKEG-M---DISWCFQ-------PEKGLP-KPDAVLL 151 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~-~~~~--~~~~-~---~~~~~~~-------~~~~~~-~pd~vi~ 151 (227)
..+..+. .|+||+++... .+.. ...+ + ....+.. .....+ .||+.||
T Consensus 71 ~~~~~~~------------------~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIy 132 (216)
T COG1428 71 KALSDKN------------------NILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIY 132 (216)
T ss_pred HHhcccc------------------cccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEE
Confidence 2222222 34477776544 2211 1111 1 1111111 122344 8999999
Q ss_pred eecCHHHHHHhcCCCCCCcc------cHHHHHHHHHHHHHHhhC----CeEEEcCC----CCHHHHHHHHHHHHHHHhhh
Q psy16874 152 FKLNEEALQRRKGFGDERYE------QTDFQRKVAENYEKLKDN----IWIDIDAD----KDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 152 L~~~~e~~~~R~~~r~~~~~------~~~~~~~~~~~~~~~~~~----~~~~Id~~----~s~~~v~~~I~~~i~~~l~~ 217 (227)
|+|+.+++.+|+.+|++.+| +.++++.++..|..|..+ +.+.||++ ...++-...+...|...++.
T Consensus 133 Ld~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~~~~ 212 (216)
T COG1428 133 LDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAKLKL 212 (216)
T ss_pred EeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHHHHHhh
Confidence 99999999999998888776 157999999999999875 67777755 22244555666666655543
No 33
>PLN02842 nucleotide kinase
Probab=99.76 E-value=8.7e-18 Score=146.51 Aligned_cols=172 Identities=19% Similarity=0.233 Sum_probs=116.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHH
Q psy16874 12 VFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLI 89 (227)
Q Consensus 12 ~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 89 (227)
.|+|+|||||||+|+.|++.++..++++.. +++ ...+++.|..+++++.++..+++.....+. ...+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll-----------~drl 69 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMV-----------TGRL 69 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHH-----------HHHH
Confidence 379999999999999999999998888765 332 223678899999999888877776655322 2222
Q ss_pred HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC--
Q psy16874 90 EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD-- 167 (227)
Q Consensus 90 ~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~-- 167 (227)
... ....+|||+| +||++..+. .. +......||++|+|++|++++.+|+..|.
T Consensus 70 ~~~-------------~~~~~G~ILD-----GfPRt~~Qa----~~---Le~~~~~PDlVI~LDvpdevlleRl~gR~~d 124 (505)
T PLN02842 70 SRE-------------DAKEKGWLLD-----GYPRSFAQA----QS---LEKLKIRPDIFILLDVPDEILIDRCVGRRLD 124 (505)
T ss_pred hCc-------------cccCCcEEEe-----CCCCcHHHH----HH---HHhcCCCCCEEEEEeCCHHHHHHHHhccccc
Confidence 210 1234567779 666654431 11 22234579999999999999999975431
Q ss_pred ----C--------------------Ccc-cHHHHHHHHHHHHHHhh-------CCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 168 ----E--------------------RYE-QTDFQRKVAENYEKLKD-------NIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 168 ----~--------------------~~~-~~~~~~~~~~~~~~~~~-------~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
. +.. +.+..++-...|.+... ..++.||+++++++|+++|.+.|.+.+
T Consensus 125 p~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L 204 (505)
T PLN02842 125 PVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQ 204 (505)
T ss_pred cccCCccccccCCCCccccccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 0 001 12333333334554442 157899999999999999999999888
Q ss_pred hhcC
Q psy16874 216 KKSQ 219 (227)
Q Consensus 216 ~~~~ 219 (227)
.++.
T Consensus 205 ~~~~ 208 (505)
T PLN02842 205 KDAT 208 (505)
T ss_pred hhhh
Confidence 7754
No 34
>PHA03132 thymidine kinase; Provisional
Probab=99.76 E-value=2.8e-17 Score=145.29 Aligned_cols=162 Identities=19% Similarity=0.149 Sum_probs=109.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC-----CCchHHHHHHHhhc--CCCCHHHHH--------
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT-----ISTGHIIDEYLRKK--IELPDQAAH-------- 71 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~-------- 71 (227)
++++|+|+|++||||||+++.|++.+ +..+..+.+|... ...++.+.+.+..+ +.+......
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~l---g~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA 332 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGIL---GDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFA 332 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHh---CCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHh
Confidence 37899999999999999999999988 7788889998632 23455555555432 122222111
Q ss_pred --HHHHhhhhhhh----hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhh---hccCC-CChhhhhcc-c
Q psy16874 72 --LLFSANRWERE----PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS---AAKEG-MDISWCFQP-E 140 (227)
Q Consensus 72 --~~~~~~~~~~~----~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~---~~~~~-~~~~~~~~~-~ 140 (227)
+.+.++|.++. ..+.+.+..+.+||+ |||++|.+++. ....+ ++...+..+ .
T Consensus 333 ~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~-----------------DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~ 395 (580)
T PHA03132 333 TPFRALATRTRRLVQPESVRRPVAPLDNWVLF-----------------DRHLLSATVVFPLMHLRNGMLSFSHFIQLLS 395 (580)
T ss_pred hHHHHHHHHHHHHHhhhhhccccccCCCEEEE-----------------ecCccccHHHHHHhccccccCCHHHHHHHHH
Confidence 13345665553 334456677889999 99999988733 22222 222222122 1
Q ss_pred -CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhh
Q psy16874 141 -KGLPKPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLKD 188 (227)
Q Consensus 141 -~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~ 188 (227)
...+.||++|||+++++++.+|+.+|++.++ +.+|++++++.|..+..
T Consensus 396 ~~~~~~PDLiIyLdv~pe~alkRIkkRgR~~E~~IdleYL~rLre~Y~~l~~ 447 (580)
T PHA03132 396 TFRAHEGDVIVLLKLNSEENLRRVKKRGRKEEKGINLTYLKELNWAYHAVYC 447 (580)
T ss_pred HhcccCCCEEEEEeCCHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHH
Confidence 1224699999999999999999988766555 47899999998888765
No 35
>PRK14530 adenylate kinase; Provisional
Probab=99.74 E-value=4.9e-17 Score=129.56 Aligned_cols=163 Identities=17% Similarity=0.253 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCC------CCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPD------RTISTGHIIDEYLRKKIELPDQAAHLLFSANRWER 81 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
+.|+|+|+|||||||+++.|++.++..+++++. +++.. .....+. .+.++..+..+++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~---------- 72 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVN---------- 72 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHH----------
Confidence 359999999999999999999999887877654 33211 1122232 34455556555664433
Q ss_pred hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874 82 EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 82 ~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~ 161 (227)
..+...+... .|||+| ++|++..+. ..+.. ...|+++|+|++|++++.+
T Consensus 73 -~~l~~~l~~~-----------------~~~Ild-----G~pr~~~q~----~~l~~----~~~~d~vI~Ld~~~~~l~~ 121 (215)
T PRK14530 73 -EIVEEALSDA-----------------DGFVLD-----GYPRNLEQA----EYLES----ITDLDVVLYLDVSEEELVD 121 (215)
T ss_pred -HHHHHHHhcC-----------------CCEEEc-----CCCCCHHHH----HHHHH----hcCCCEEEEEeCCHHHHHH
Confidence 2333333322 234447 666554331 22221 1258999999999999999
Q ss_pred hcCCCCC--------------------------Ccc-----cHHHHHHHHHHHHHHh--------h-CCeEEEcCCCCHH
Q psy16874 162 RKGFGDE--------------------------RYE-----QTDFQRKVAENYEKLK--------D-NIWIDIDADKDID 201 (227)
Q Consensus 162 R~~~r~~--------------------------~~~-----~~~~~~~~~~~~~~~~--------~-~~~~~Id~~~s~~ 201 (227)
|+..|.. +.. ..+..+.-...|.... . ..++.||++++++
T Consensus 122 Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~ 201 (215)
T PRK14530 122 RLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPD 201 (215)
T ss_pred HHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHH
Confidence 9865420 111 1222222222332211 1 1588999999999
Q ss_pred HHHHHHHHHHHH
Q psy16874 202 TLGLIVKDIVID 213 (227)
Q Consensus 202 ~v~~~I~~~i~~ 213 (227)
+|++.|...|..
T Consensus 202 ~v~~~i~~~l~~ 213 (215)
T PRK14530 202 EVWADIQDAIDD 213 (215)
T ss_pred HHHHHHHHHHhc
Confidence 999999988864
No 36
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.71 E-value=5.4e-17 Score=127.00 Aligned_cols=123 Identities=21% Similarity=0.204 Sum_probs=82.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
|+|+|+|||||||+++.|++.++..+++++. +++. ....+.+..+.+++.++...++.... ..+.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~l~~~~ 70 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVI-----------KLLKER 70 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHH-----------HHHHHH
Confidence 8999999999999999999999888877654 3332 12345667777777777666665433 344444
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
+... ....|||+| +||++..+. .++.........|+++|+|++|++++.+|+..|.
T Consensus 71 l~~~--------------~~~~~~vld-----g~Pr~~~q~----~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 71 LKKP--------------DCKKGFILD-----GFPRTVDQA----EALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred Hhcc--------------cccCCEEEe-----CCCCCHHHH----HHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 4432 023455568 666554432 3333222223478999999999999999997653
No 37
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.71 E-value=1.7e-16 Score=122.29 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
+.|+|.|+|||||||+|+.|++.++..|++.++ ++.. ....+.+..++.++..+..++++... ..+.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~-----------~~v~ 69 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVN-----------GLVK 69 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHH-----------HHHH
Confidence 358999999999999999999999999999766 4442 23577888899999988888887766 3444
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
.++...+ +..++|+| +||+...+. ..++.. ......+|.++.++++.+.+..|+..
T Consensus 70 ~rl~~~d--------------~~~~~I~d-----g~PR~~~qa----~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~ 126 (178)
T COG0563 70 ERLDEAD--------------CKAGFILD-----GFPRTLCQA----RALKRLLKELGVRLDMVIELDVPEELLLERLLG 126 (178)
T ss_pred HHHHhhc--------------ccCeEEEe-----CCCCcHHHH----HHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhC
Confidence 4444321 11144558 888776663 333322 22235889999999999999999976
Q ss_pred CCCCcc-cHHHHHHHHHHHHHHhhC--Ce--EEEcCCCCHHHHHHHHHHHH
Q psy16874 166 GDERYE-QTDFQRKVAENYEKLKDN--IW--IDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 166 r~~~~~-~~~~~~~~~~~~~~~~~~--~~--~~Id~~~s~~~v~~~I~~~i 211 (227)
|..+.. +.+........|...... .+ +.||+.++++++++.+.+.+
T Consensus 127 r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 127 RRVREDDNEETVKKRLKVYHEQTAPLIEYYSVTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ccccccCCHHHHHHHHHHHHhcccchhhhheeeccCCCCHHHHHHHHHHhh
Confidence 532221 244555555566655543 22 56999999999999887764
No 38
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.67 E-value=5e-16 Score=117.36 Aligned_cols=158 Identities=17% Similarity=0.112 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
+.|+++|++||||||+++.|++.|+...++++..-+... +..+.+++.. |.......+. +.+..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~----g~sI~eIF~~~GE~~FR~~E~-----------~vl~~ 67 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT----GMSIAEIFEEEGEEGFRRLET-----------EVLKE 67 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH----CcCHHHHHHHHhHHHHHHHHH-----------HHHHH
Confidence 459999999999999999999999998888765222111 2233344443 2211222222 45666
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC-
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG- 166 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r- 166 (227)
....++.||. .++|.|++ . .....+. .--.+|||++|++++++|+...
T Consensus 68 l~~~~~~Via----------TGGG~v~~-----~---------enr~~l~-------~~g~vv~L~~~~e~l~~Rl~~~~ 116 (172)
T COG0703 68 LLEEDNAVIA----------TGGGAVLS-----E---------ENRNLLK-------KRGIVVYLDAPFETLYERLQRDR 116 (172)
T ss_pred HhhcCCeEEE----------CCCccccC-----H---------HHHHHHH-------hCCeEEEEeCCHHHHHHHhcccc
Confidence 6666666665 78888887 1 1112231 1227999999999999999732
Q ss_pred -CCCcccH---HHHHHH----HHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 167 -DERYEQT---DFQRKV----AENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 167 -~~~~~~~---~~~~~~----~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
++.+... +.++.+ ...|++. ..++++++...++++++|.+.+...+
T Consensus 117 ~RPll~~~~~~~~l~~L~~~R~~~Y~e~---a~~~~~~~~~~~~v~~~i~~~l~~~~ 170 (172)
T COG0703 117 KRPLLQTEDPREELEELLEERQPLYREV---ADFIIDTDDRSEEVVEEILEALEGSL 170 (172)
T ss_pred CCCcccCCChHHHHHHHHHHHHHHHHHh---CcEEecCCCCcHHHHHHHHHHHHHhc
Confidence 2233321 222222 2345444 45899988777889999988887543
No 39
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.64 E-value=1.8e-15 Score=116.22 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=90.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLI 89 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 89 (227)
.|+|+|++||||||+++.|++.++...++.+.+.+...+.. +.+++...+ +... +....+.+ ..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~----~~~~~~~~g----~~~~------~~~e~~~~-~~~ 68 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMT----VAEIVEREG----WAGF------RARESAAL-EAV 68 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCC----HHHHHHHHC----HHHH------HHHHHHHH-HHh
Confidence 48889999999999999999999776555443221111111 122222111 0000 00001222 233
Q ss_pred HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCC-
Q psy16874 90 EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE- 168 (227)
Q Consensus 90 ~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~- 168 (227)
..+..|+. +++|+|++ .. ...++. ..+++|||++|++++.+|+..+..
T Consensus 69 ~~~~~vi~----------~ggg~vl~-----~~---------~~~~l~-------~~~~~v~l~~~~~~~~~Rl~~r~~~ 117 (171)
T PRK03731 69 TAPSTVIA----------TGGGIILT-----EE---------NRHFMR-------NNGIVIYLCAPVSVLANRLEANPEE 117 (171)
T ss_pred cCCCeEEE----------CCCCccCC-----HH---------HHHHHH-------hCCEEEEEECCHHHHHHHHcccccc
Confidence 44455554 56667766 11 113332 356899999999999999975421
Q ss_pred ---------Ccc-c-HHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 169 ---------RYE-Q-TDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 169 ---------~~~-~-~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.+. . .+.+++....|.... .++||+++++++++++|.+.+.+
T Consensus 118 ~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a---~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 118 DQRPTLTGKPISEEVAEVLAEREALYREVA---HHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred ccCCcCCCCChHHHHHHHHHHHHHHHHHhC---CEEEcCCCCHHHHHHHHHHHHhc
Confidence 111 1 344455555665543 48999999999999999888753
No 40
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.63 E-value=4.5e-15 Score=120.83 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=102.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLI 89 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 89 (227)
+|+|+|+|||||||+++.|++.+...++++.++.. +.++..+.. +...... ..+......+...+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~--------D~lr~~~~~---~~~~~e~----~~~~~~~~~i~~~l 65 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT--------DLIRESFPV---WKEKYEE----FIRDSTLYLIKTAL 65 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc--------HHHHHHhHH---hhHHhHH----HHHHHHHHHHHHHH
Confidence 58999999999999999999999888888776642 122222210 0000000 00111224566677
Q ss_pred HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCCC
Q psy16874 90 EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDER 169 (227)
Q Consensus 90 ~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~ 169 (227)
..+..||+ |...+ +...+ ..+..+......+..+|||++|.+++.+|...|+..
T Consensus 66 ~~~~~VI~-----------------D~~~~----~~~~r-----~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~ 119 (249)
T TIGR03574 66 KNKYSVIV-----------------DDTNY----YNSMR-----RDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK 119 (249)
T ss_pred hCCCeEEE-----------------eccch----HHHHH-----HHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC
Confidence 78888888 84321 11111 122223333346778999999999999999776544
Q ss_pred cccHHHHHHHHHHHHHHhh-----CCeEEEcCCC--CHHHHHHHHHHHHHHHh
Q psy16874 170 YEQTDFQRKVAENYEKLKD-----NIWIDIDADK--DIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~-----~~~~~Id~~~--s~~~v~~~I~~~i~~~l 215 (227)
+ ..+.+..+...|+.... .+.++||++. +.+++++.|.+.+...+
T Consensus 120 ~-~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~~~ 171 (249)
T TIGR03574 120 I-PNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEILEISENKL 171 (249)
T ss_pred C-CHHHHHHHHHhhCCCCCCCCccCceEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 3 35566666666654432 1779999886 66889999888776433
No 41
>PRK06762 hypothetical protein; Provisional
Probab=99.63 E-value=2.3e-14 Score=109.53 Aligned_cols=160 Identities=15% Similarity=0.047 Sum_probs=91.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCH-HHHHHHHHhhhhhhhhHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD-QAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~ 86 (227)
|++|+|+|+|||||||+++.|++.++. .+..+. .+.++..+......+. ..... ....+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~---~~~~i~--------~D~~r~~l~~~~~~~~~~~~~~--------~~~~~~ 62 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR---GTLLVS--------QDVVRRDMLRVKDGPGNLSIDL--------IEQLVR 62 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC---CeEEec--------HHHHHHHhccccCCCCCcCHHH--------HHHHHH
Confidence 679999999999999999999999842 333332 1222221111100000 00000 012233
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG 166 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r 166 (227)
..+..|..|++ |...... ... .++..+......+..+|||++|++++.+|...|
T Consensus 63 ~~~~~g~~vil-----------------d~~~~~~----~~~-----~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R 116 (166)
T PRK06762 63 YGLGHCEFVIL-----------------EGILNSD----RYG-----PMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR 116 (166)
T ss_pred HHHhCCCEEEE-----------------chhhccH----hHH-----HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc
Confidence 34567778887 7332111 011 223333333445788999999999999999876
Q ss_pred CCC-cccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 167 DER-YEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
... ....+.+++.....+.+.....++++++.++++++++|...+.
T Consensus 117 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 117 PKSHEFGEDDMRRWWNPHDTLGVIGETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred cccccCCHHHHHHHHhhcCCcCCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 542 2234555555433333221245666777899999999988764
No 42
>PRK13948 shikimate kinase; Provisional
Probab=99.62 E-value=6.9e-15 Score=113.76 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC-CCCHHHHHHHHHhhhhhhhhH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI-ELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (227)
+.+..|+++|++||||||+++.|++.++...++.+...+.. .|..+.+++...+ ......+. +.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~----~g~si~~if~~~Ge~~fR~~E~-----------~~ 72 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV----TGKSIPEIFRHLGEAYFRRCEA-----------EV 72 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH----HhCCHHHHHHHhCHHHHHHHHH-----------HH
Confidence 56789999999999999999999999987665554322111 1222233333211 11111111 33
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
+...+..+..||. +++|++++ . .....+. . -..+|||++|++++.+|+.
T Consensus 73 l~~l~~~~~~VIa----------~GgG~v~~-----~---------~n~~~l~---~----~g~vV~L~~~~e~l~~Rl~ 121 (182)
T PRK13948 73 VRRLTRLDYAVIS----------LGGGTFMH-----E---------ENRRKLL---S----RGPVVVLWASPETIYERTR 121 (182)
T ss_pred HHHHHhcCCeEEE----------CCCcEEcC-----H---------HHHHHHH---c----CCeEEEEECCHHHHHHHhc
Confidence 4444445556665 56666666 1 0112221 1 2368999999999999995
Q ss_pred CCC-CCccc---HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874 165 FGD-ERYEQ---TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 165 ~r~-~~~~~---~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l 215 (227)
.+. +.... .+.+..+.+.-+.++....++||++ .+++++.++|.+.+...+
T Consensus 122 ~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t~~~~~~ei~~~i~~~l~~~~ 177 (182)
T PRK13948 122 PGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVSTDGRRSEEVVEEIVEKLWAWA 177 (182)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 432 22221 1222222222121111123677766 799999999999997754
No 43
>PRK08233 hypothetical protein; Provisional
Probab=99.62 E-value=3.8e-14 Score=109.69 Aligned_cols=161 Identities=14% Similarity=0.148 Sum_probs=92.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe-EEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS-QFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++++|+|.|++||||||+++.|++.++...+.. +.++.+. ....+..++..+..+...... ...+.+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~l 69 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN----CPEDICKWIDKGANYSEWVLT--------PLIKDI 69 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc----CchhhhhhhhccCChhhhhhH--------HHHHHH
Confidence 478999999999999999999999986432221 1122221 112233444443332111111 111334
Q ss_pred HHHHHcC--CEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 86 TKLIEQG--ITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 86 ~~~~~~~--~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
....... ..|++ | +++.... ..+ ...+|++|||++|++++.+|.
T Consensus 70 ~~~~~~~~~~~viv-----------------d------~~~~~~~-----~~~------~~~~d~~i~l~~~~~~~~~R~ 115 (182)
T PRK08233 70 QELIAKSNVDYIIV-----------------D------YPFAYLN-----SEM------RQFIDVTIFIDTPLDIAMARR 115 (182)
T ss_pred HHHHcCCCceEEEE-----------------e------eehhhcc-----HHH------HHHcCEEEEEcCCHHHHHHHH
Confidence 4444333 44555 5 1211110 111 124789999999999998886
Q ss_pred CCCC--C----Cccc--HHHHHHHHHHHHHHhhC----CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 164 GFGD--E----RYEQ--TDFQRKVAENYEKLKDN----IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 164 ~~r~--~----~~~~--~~~~~~~~~~~~~~~~~----~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
..|. + .+.. ..++......|..+... .+++||++.++++++++|.+.+..
T Consensus 116 ~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 116 ILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 4331 1 1111 34555555566664432 468899999999999999988763
No 44
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.61 E-value=2.1e-16 Score=119.08 Aligned_cols=119 Identities=25% Similarity=0.243 Sum_probs=83.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHHH
Q psy16874 13 FEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIE 90 (227)
Q Consensus 13 i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 90 (227)
|.|+|||||||+|+.|++.++..++++.. +++ ....++.|..+++++.++..+++.... +.+...+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~-----------~ll~~~l~ 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVI-----------ELLKERLE 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHH-----------HHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHH-----------HHHHHHHh
Confidence 68999999999999999999988887754 333 123567788889999999988887766 45555554
Q ss_pred cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 91 QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 91 ~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
+. ...+|||+| +||++..+. ..+.+ +......|+.+|+|++|.+++.+|+..
T Consensus 70 ~~--------------~~~~g~ild-----GfPrt~~Qa----~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 70 QP--------------PCNRGFILD-----GFPRTLEQA----EALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp SG--------------GTTTEEEEE-----SB-SSHHHH----HHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred hh--------------cccceeeee-----eccccHHHH----HHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 32 345677778 888877662 22221 112455899999999999999999975
No 45
>KOG3877|consensus
Probab=99.61 E-value=3.5e-14 Score=113.42 Aligned_cols=186 Identities=17% Similarity=0.155 Sum_probs=118.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-----eeCCCCC-----C-----CchHHHHHHHhhcCCC-CHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-----VNFPDRT-----I-----STGHIIDEYLRKKIEL-PDQAA 70 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-----~~~~~~~-----~-----~~~~~~~~~~~~~~~~-~~~~~ 70 (227)
+.++|+++|++|||||++++.|++.|++.+++... ...-+++ + ....-+..++.++..- .....
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q 149 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ 149 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence 46899999999999999999999999999988422 1111000 0 0111245555554321 22222
Q ss_pred HHHHHhhhhhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC--CC-Ch---hh---hhcc-c
Q psy16874 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE--GM-DI---SW---CFQP-E 140 (227)
Q Consensus 71 ~~~~~~~~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~--~~-~~---~~---~~~~-~ 140 (227)
.-+|.....+.++.+...+.. ++|+|++|+.+|.|++..+.. |. .- .. +++. -
T Consensus 150 ~r~y~~R~~QY~dAL~HiL~T-----------------GQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti 212 (393)
T KOG3877|consen 150 DRIYNCRFDQYLDALAHILNT-----------------GQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTI 212 (393)
T ss_pred HHHHHhHHHHHHHHHHHHHhc-----------------CCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhh
Confidence 223333333345566656554 456666999999998875531 11 10 11 1111 1
Q ss_pred CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc----cHHHHHHHHHHHHHHh-hC-----CeEEEcCC--CCHHHHHHHHH
Q psy16874 141 KGLPKPDAVLLFKLNEEALQRRKGFGDERYE----QTDFQRKVAENYEKLK-DN-----IWIDIDAD--KDIDTLGLIVK 208 (227)
Q Consensus 141 ~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~----~~~~~~~~~~~~~~~~-~~-----~~~~Id~~--~s~~~v~~~I~ 208 (227)
..+..|++||||++|...+.+|+.+|++..+ ++.++..+.+.|.+.. +. .++.-|.+ ++.+.|.+.|.
T Consensus 213 ~~ll~PHLViYld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIE 292 (393)
T KOG3877|consen 213 PQLLWPHLVIYLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIE 292 (393)
T ss_pred hhhcCccEEEEEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhh
Confidence 2456899999999999999999998876655 3689999998887662 21 67777766 66667777765
Q ss_pred H
Q psy16874 209 D 209 (227)
Q Consensus 209 ~ 209 (227)
.
T Consensus 293 r 293 (393)
T KOG3877|consen 293 R 293 (393)
T ss_pred h
Confidence 4
No 46
>PRK13946 shikimate kinase; Provisional
Probab=99.60 E-value=2.3e-14 Score=111.47 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
++.|+++|++||||||+++.|++.|+...++.+...+...+.+.. +++.. +.... +....+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~----e~~~~~ge~~~-----------~~~e~~~l~ 74 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIA----EIFAAYGEPEF-----------RDLERRVIA 74 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHH----HHHHHHCHHHH-----------HHHHHHHHH
Confidence 568999999999999999999999987766655421111111111 11111 11000 001113455
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG 166 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r 166 (227)
..+..+..||+ ++.|.++. . .. ...+. .-.++|||++|++++.+|+..+
T Consensus 75 ~l~~~~~~Vi~----------~ggg~~~~-----~----~~-----r~~l~-------~~~~~v~L~a~~e~~~~Rl~~r 123 (184)
T PRK13946 75 RLLKGGPLVLA----------TGGGAFMN-----E----ET-----RAAIA-------EKGISVWLKADLDVLWERVSRR 123 (184)
T ss_pred HHHhcCCeEEE----------CCCCCcCC-----H----HH-----HHHHH-------cCCEEEEEECCHHHHHHHhcCC
Confidence 55556666666 23332222 0 00 01221 1247899999999999999866
Q ss_pred CCC--cc---cHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 167 DER--YE---QTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 167 ~~~--~~---~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
..+ .. ..+.++.+.+....+... ++.+.+++.+++++.+.|.+.|..++.+
T Consensus 124 ~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 124 DTRPLLRTADPKETLARLMEERYPVYAEADLTVASRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred CCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 432 11 134445544433333332 4545456689999999999999877655
No 47
>PRK13947 shikimate kinase; Provisional
Probab=99.60 E-value=2.6e-14 Score=109.71 Aligned_cols=155 Identities=21% Similarity=0.149 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCC-CCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE-LPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
.|+|.|+|||||||+++.|++.|++..++.+...+...+.+ +.+++..... .....+ ...+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~----~~~~~~~~ge~~~~~~e-----------~~~~~~l 67 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMT----VAEIFEKDGEVRFRSEE-----------KLLVKKL 67 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCc----HHHHHHHhChHHHHHHH-----------HHHHHHH
Confidence 49999999999999999999999887766654322111212 2222222111 000000 0223333
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCC
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE 168 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~ 168 (227)
...+..|+. ++.|+++|.. ....+. ...++|||++|++++.+|+..+..
T Consensus 68 ~~~~~~vi~----------~g~g~vl~~~--------------~~~~l~-------~~~~vv~L~~~~~~l~~Rl~~r~~ 116 (171)
T PRK13947 68 ARLKNLVIA----------TGGGVVLNPE--------------NVVQLR-------KNGVVICLKARPEVILRRVGKKKS 116 (171)
T ss_pred hhcCCeEEE----------CCCCCcCCHH--------------HHHHHH-------hCCEEEEEECCHHHHHHHhcCCCC
Confidence 334455554 5667888820 002221 124799999999999999976533
Q ss_pred C--cccHHHHHHHHHHHHHHh---hCCeEEEc-CCCCHHHHHHHHHHH
Q psy16874 169 R--YEQTDFQRKVAENYEKLK---DNIWIDID-ADKDIDTLGLIVKDI 210 (227)
Q Consensus 169 ~--~~~~~~~~~~~~~~~~~~---~~~~~~Id-~~~s~~~v~~~I~~~ 210 (227)
+ ....+....+.+.|+... ....++|| ++.+++++.+.|.+.
T Consensus 117 rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~~i~~~I~~~ 164 (171)
T PRK13947 117 RPLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTIDEVAEEIIKA 164 (171)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHHHHHHHHHHH
Confidence 2 222233334433333321 11225555 558999999988883
No 48
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.59 E-value=1.8e-14 Score=106.61 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCC--CCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPD--RTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
|.|.|.|+|||||||+++.|+++++..+++.+. |++-. .+-.+.++ ..+-.+.+.++...- +..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef-~~~AE~~p~iD~~iD------------~rq 67 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEF-SRYAEEDPEIDKEID------------RRQ 67 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHH-HHHHhcCchhhHHHH------------HHH
Confidence 579999999999999999999999998888655 44321 11122221 222222222222111 122
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
......+++|+ + +.-..|+.. ..+|+.|||.+|.++..+|+..
T Consensus 68 ~e~a~~~nvVl------------------e--------------grLA~Wi~k-----~~adlkI~L~Apl~vRa~Ria~ 110 (179)
T COG1102 68 KELAKEGNVVL------------------E--------------GRLAGWIVR-----EYADLKIWLKAPLEVRAERIAK 110 (179)
T ss_pred HHHHHcCCeEE------------------h--------------hhhHHHHhc-----cccceEEEEeCcHHHHHHHHHH
Confidence 33333444433 4 333377732 5789999999999999999987
Q ss_pred CCCC-ccc--HHHHH---HHHHHHHHHhhC-------CeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874 166 GDER-YEQ--TDFQR---KVAENYEKLKDN-------IWIDIDAD-KDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 166 r~~~-~~~--~~~~~---~~~~~~~~~~~~-------~~~~Id~~-~s~~~v~~~I~~~i~~~l 215 (227)
|+.. ++. .+... .-.+.|..+..- --++||++ -++++|...|...++...
T Consensus 111 REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~ 174 (179)
T COG1102 111 REGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALS 174 (179)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence 6432 322 11111 112245554421 35788877 778888888888887544
No 49
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.59 E-value=1.4e-14 Score=111.25 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=87.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++++.|+|+|++||||||+++.|++.++...++.+.+.+...+.+.. +++..... .. + +......+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~----~~~~~~g~--~~-----~---~~~~~~~~ 67 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIP----EIFEEEGE--AA-----F---RELEEEVL 67 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHH----HHHHHHCH--HH-----H---HHHHHHHH
Confidence 56889999999999999999999999976555443321111111111 11111000 00 0 00011233
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
.........|+. .+.+++++ .. ...++. ...++|||++|++++.+|+..
T Consensus 68 ~~l~~~~~~vi~----------~g~~~~~~-----~~---------~r~~l~-------~~~~~v~l~~~~~~~~~R~~~ 116 (175)
T PRK00131 68 AELLARHNLVIS----------TGGGAVLR-----EE---------NRALLR-------ERGTVVYLDASFEELLRRLRR 116 (175)
T ss_pred HHHHhcCCCEEE----------eCCCEeec-----HH---------HHHHHH-------hCCEEEEEECCHHHHHHHhcC
Confidence 333333334444 23344444 10 012231 234799999999999999976
Q ss_pred CCCC--cc--c-HHHHHHHHHHHHHHhhC-CeEEEcC-CCCHHHHHHHHHHHHHHH
Q psy16874 166 GDER--YE--Q-TDFQRKVAENYEKLKDN-IWIDIDA-DKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 166 r~~~--~~--~-~~~~~~~~~~~~~~~~~-~~~~Id~-~~s~~~v~~~I~~~i~~~ 214 (227)
+..+ .. . .+.+..+.......... ..++||+ +.+++++++.|.+.|..+
T Consensus 117 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 117 DRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred CCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence 4321 22 1 22222222221111111 2367775 499999999999998754
No 50
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.58 E-value=4.2e-14 Score=111.88 Aligned_cols=172 Identities=13% Similarity=0.173 Sum_probs=99.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFS 75 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 75 (227)
++++++|+|+||+||||||+++.|.+.....++.+-+ .+.+..+..-| +.+......+..+ .+.. +.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~l-e~~~---~~ 85 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELL-EWAE---VY 85 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcE-EEEE---Ec
Confidence 4578999999999999999999998653222223222 33222111111 1122222222110 0000 00
Q ss_pred hhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec
Q psy16874 76 ANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL 154 (227)
Q Consensus 76 ~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~ 154 (227)
...+.. ...+...+..|.++|+ |- +.+.+..+... .||+++++.+
T Consensus 86 g~~YGt~~~~i~~~~~~g~~vi~-----------------~~---------------~~~g~~~l~~~--~pd~~~if~~ 131 (206)
T PRK14738 86 GNYYGVPKAPVRQALASGRDVIV-----------------KV---------------DVQGAASIKRL--VPEAVFIFLA 131 (206)
T ss_pred CceecCCHHHHHHHHHcCCcEEE-----------------Ec---------------CHHHHHHHHHh--CCCeEEEEEe
Confidence 001111 1356777788887777 41 11111112221 4777666666
Q ss_pred C--HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 155 N--EEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 155 ~--~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
| .+++.+|+..|++. ...++.+++...|.++... .+++||++.++++++++|.+.|....
T Consensus 132 pps~e~l~~Rl~~R~~~-~~~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~~ 196 (206)
T PRK14738 132 PPSMDELTRRLELRRTE-SPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAEK 196 (206)
T ss_pred CCCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 5 56889999776433 2357778888888766532 68999999999999999999997653
No 51
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=6.4e-14 Score=102.22 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=107.5
Q ss_pred EcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHHHcCC
Q psy16874 14 EGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGI 93 (227)
Q Consensus 14 ~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 93 (227)
.|+.||||||++..|++.+++.+++-+.++-| +.+.++ ..|..+.+.-..-+....+ ..+......+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~-------aNi~KM-~~GiPL~DdDR~pWL~~l~----~~~~~~~~~~~ 68 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPP-------ANIEKM-SAGIPLNDDDRWPWLEALG----DAAASLAQKNK 68 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCH-------HHHHHH-hCCCCCCcchhhHHHHHHH----HHHHHhhcCCC
Confidence 49999999999999999999988887766632 344443 3344443322111111000 12233334555
Q ss_pred EEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCC-EEEEeecCHHHHHHhcCCCCCCccc
Q psy16874 94 TLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPD-AVLLFKLNEEALQRRKGFGDERYEQ 172 (227)
Q Consensus 94 ~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~L~~~~e~~~~R~~~r~~~~~~ 172 (227)
.+|++|++|++.- | ..+ ... .|+ .+|||+.+++++.+|+..|...|-+
T Consensus 69 ~~vi~CSALKr~Y---------R-----------------D~L---R~~--~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~ 117 (161)
T COG3265 69 HVVIACSALKRSY---------R-----------------DLL---REA--NPGLRFVYLDGDFDLILERMKARKGHFMP 117 (161)
T ss_pred ceEEecHHHHHHH---------H-----------------HHH---hcc--CCCeEEEEecCCHHHHHHHHHhcccCCCC
Confidence 5677677777662 1 112 111 233 5999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 173 TDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 173 ~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.+.++.+.+..+....+ .++.||.+.+++++.+++...|..
T Consensus 118 ~~ll~SQfa~LE~P~~de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 118 ASLLDSQFATLEEPGADEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence 88888888787777654 799999999999999998888753
No 52
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.57 E-value=5.5e-14 Score=108.12 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=87.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
+.+.|+|.|++||||||+++.|++.++...++.+...+...+.... .++.. +....... ..+.+
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~----~~~~~~g~~~fr~~-----------e~~~l 67 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIG----WVFDVEGEEGFRDR-----------EEKVI 67 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHh----HHHHHhCHHHHHHH-----------HHHHH
Confidence 3567999999999999999999999865544433211111111111 11111 10000000 11233
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
......+..|+. +++|++++. ....++. ..+.+|||++|++++.+|+..
T Consensus 68 ~~l~~~~~~vi~----------~ggg~v~~~--------------~~~~~l~-------~~~~vv~L~~~~e~~~~Ri~~ 116 (172)
T PRK05057 68 NELTEKQGIVLA----------TGGGSVKSR--------------ETRNRLS-------ARGVVVYLETTIEKQLARTQR 116 (172)
T ss_pred HHHHhCCCEEEE----------cCCchhCCH--------------HHHHHHH-------hCCEEEEEeCCHHHHHHHHhC
Confidence 333334445544 566666651 0113332 235899999999999999965
Q ss_pred CC--CCccc---HHHHH----HHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 166 GD--ERYEQ---TDFQR----KVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 166 r~--~~~~~---~~~~~----~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
+. +...+ .+.+. .....|++.++ ++||++ .+++++.++|.+.+.
T Consensus 117 ~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad---~~idt~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 117 DKKRPLLQVDDPREVLEALANERNPLYEEIAD---VTIRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHh
Confidence 42 22221 22233 23335555544 788876 799999998888774
No 53
>PRK03839 putative kinase; Provisional
Probab=99.56 E-value=4.6e-14 Score=109.30 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=45.0
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHH--HHHh-hCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENY--EKLK-DNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~--~~~~-~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
.|+++|||+++++++.+|+..|+..-.. ......+.+.+ +.+. ..++++||++ .++++++++|.+.|..
T Consensus 79 ~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~ 153 (180)
T PRK03839 79 PVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKS 153 (180)
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999765311110 11112222211 1111 2278999997 6999999999888864
No 54
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.56 E-value=4.8e-14 Score=108.81 Aligned_cols=160 Identities=22% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++|.+|+|+|++||||||+++.|++.+...+..+..+. ++.+++.+..... ....... .+.+. ..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~--------~d~~r~~~~~~~~-~~~~~~~--~~~~~---~~l 70 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD--------GDELREILGHYGY-DKQSRIE--MALKR---AKL 70 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe--------cHHHHhhcCCCCC-CHHHHHH--HHHHH---HHH
Confidence 57889999999999999999999999987665555443 3344444432211 1111110 01111 122
Q ss_pred HHH-HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 86 TKL-IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 86 ~~~-~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
... ...|.+||+ |... ++ .++.........+.++|||++|++++.+|..
T Consensus 71 ~~~l~~~g~~VI~-----------------~~~~----~~---------~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~ 120 (176)
T PRK05541 71 AKFLADQGMIVIV-----------------TTIS----MF---------DEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ 120 (176)
T ss_pred HHHHHhCCCEEEE-----------------EeCC----cH---------HHHHHHHHhhcCCeEEEEEeCCHHHHHHhch
Confidence 222 256788888 5111 00 1121222222345689999999999999986
Q ss_pred CCCCCccc------HHHHHHHHHHHHHHhhCCeEEEcCC--CCHHHHHHHHHHHHHHH
Q psy16874 165 FGDERYEQ------TDFQRKVAENYEKLKDNIWIDIDAD--KDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 165 ~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~Id~~--~s~~~v~~~I~~~i~~~ 214 (227)
++ .+.. .+........|+.. ..++||++ .++++++++|.+.+...
T Consensus 121 ~~--l~~~~~~~~~~~~~~~~~~~~~~~---Ad~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 121 KG--LYTKALKGEIKNVVGVDIPFDEPK---ADLVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred hh--HHHHHHcCcccccccCCCcccCCC---CCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 32 1110 11111111122222 24777776 48888888888777543
No 55
>PRK13949 shikimate kinase; Provisional
Probab=99.56 E-value=3.8e-14 Score=108.64 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=83.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
.|+|+|++||||||+++.|++.++...++++.+-+...+. .+.+++.. +.......+. ..+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~----~~~~~~~~~g~~~fr~~e~-----------~~l~~l 67 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK----TVGDIFAERGEAVFRELER-----------NMLHEV 67 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc----cHHHHHHHhCHHHHHHHHH-----------HHHHHH
Confidence 4999999999999999999999987766655421111111 12222222 1111111111 233332
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC--
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG-- 166 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r-- 166 (227)
......|+. +++|++.+ . .....+. ..+++|||++|++++.+|+..+
T Consensus 68 ~~~~~~vis----------~Ggg~~~~-----~---------~~~~~l~-------~~~~vi~L~~~~~~~~~Ri~~~~~ 116 (169)
T PRK13949 68 AEFEDVVIS----------TGGGAPCF-----F---------DNMELMN-------ASGTTVYLKVSPEVLFVRLRLAKQ 116 (169)
T ss_pred HhCCCEEEE----------cCCcccCC-----H---------HHHHHHH-------hCCeEEEEECCHHHHHHHHhcCCC
Confidence 234455554 45555544 0 0012221 3468999999999999998632
Q ss_pred -CCCccc---HHHHHHHH---HHHHHHhhCCeEEEcCC-CCHHHHHHHHHHH
Q psy16874 167 -DERYEQ---TDFQRKVA---ENYEKLKDNIWIDIDAD-KDIDTLGLIVKDI 210 (227)
Q Consensus 167 -~~~~~~---~~~~~~~~---~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~ 210 (227)
++.... .++.+.+. +.+..+.+..-++||++ .++++++++|.+.
T Consensus 117 ~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 117 QRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHh
Confidence 222221 22233333 33333332223778866 5888888888764
No 56
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3e-14 Score=107.05 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=101.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCH--HHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD--QAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 83 (227)
++|.+|||+|++||||||++..|.+.|...|+.+..++ |+.++.-+..+-.++. ..+...-.+ .
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD--------GDnvR~gL~~dLgFs~edR~eniRRva------e 86 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD--------GDNVRHGLNRDLGFSREDRIENIRRVA------E 86 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec--------ChhHhhcccCCCCCChHHHHHHHHHHH------H
Confidence 56889999999999999999999999999999998876 5666665554333332 222211111 2
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
..+-...+|-+|+++ +.| ||...+ +....+... ..-+-||++||.+++.+|-
T Consensus 87 vAkll~daG~iviva-------------------~IS--P~r~~R-----~~aR~~~~~--~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 87 VAKLLADAGLIVIVA-------------------FIS--PYREDR-----QMARELLGE--GEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred HHHHHHHCCeEEEEE-------------------eeC--ccHHHH-----HHHHHHhCc--CceEEEEeCCCHHHHHhcC
Confidence 223334577777771 111 111111 111111111 1347999999999999998
Q ss_pred CCCCCCcc-----cHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 164 GFGDERYE-----QTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 164 ~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
.++ .|. ....+.-+...|+.... +-+.+|++ .++++..+.|++.+.
T Consensus 139 pKG--LYkKAr~GeI~~fTGid~pYE~P~~-Pel~l~t~~~~vee~v~~i~~~l~ 190 (197)
T COG0529 139 PKG--LYKKARAGEIKNFTGIDSPYEAPEN-PELHLDTDRNSVEECVEQILDLLK 190 (197)
T ss_pred chH--HHHHHHcCCCCCCcCCCCCCCCCCC-CeeEeccccCCHHHHHHHHHHHHH
Confidence 753 221 12233344445655443 77889975 899999888888875
No 57
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.55 E-value=1.8e-14 Score=108.07 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=47.8
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcc----c--HHHHHHHH-HHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYE----Q--TDFQRKVA-ENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~----~--~~~~~~~~-~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
-+|++|.|+++|+++.+|+..|+-.-+ + .+.+.-+. ++.+.+ .+++.||++ +|++++++.|.+++..
T Consensus 82 ~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~--~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 82 DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF--EAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc--CceEEEECCCCCHHHHHHHHHHHHcc
Confidence 489999999999999999998653322 2 22222222 233333 268899955 9999999999999974
No 58
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.55 E-value=4.4e-14 Score=109.64 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC------CCCCC--chHHHHHHHh--------------hcCCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP------DRTIS--TGHIIDEYLR--------------KKIEL 65 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~--------------~~~~~ 65 (227)
.++|.|.||.||||||+|+.|+++|++.+++++.+... ..+.+ -...+..... ++..+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 58899999999999999999999999999987642210 00000 0112222221 11122
Q ss_pred CHH--HHHHHHHhhhhhhhhHHHHHHHcCCEEEEecccccccccC-CCCCCCCcccchhhhhhhccCCCChhhhhcccCC
Q psy16874 66 PDQ--AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNL-DQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKG 142 (227)
Q Consensus 66 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~-~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (227)
... .......++.......++..+..- |+.-.. ..|+|+| |.+...+ -
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~----------Qr~~a~~~~~~V~d--------------GRDiGTv-----V 134 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKL----------QRAFAKNGPGIVAD--------------GRDIGTV-----V 134 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHH----------HHHHHhcCCCEEEe--------------cCCCcce-----E
Confidence 211 111222223222222232222110 001111 1334557 5554444 3
Q ss_pred CCCCCEEEEeecCHHHHHHhcCCC-CCCc--cc-HHHHHHHHH-HHHHHhhC--------CeEEEcCC-CCHHHHHHHHH
Q psy16874 143 LPKPDAVLLFKLNEEALQRRKGFG-DERY--EQ-TDFQRKVAE-NYEKLKDN--------IWIDIDAD-KDIDTLGLIVK 208 (227)
Q Consensus 143 ~~~pd~vi~L~~~~e~~~~R~~~r-~~~~--~~-~~~~~~~~~-~~~~~~~~--------~~~~Id~~-~s~~~v~~~I~ 208 (227)
+|..++.|||++++|+..+|..+. .... .. ++.+..+.+ -+.+..+. ..++||++ .+++||.++|.
T Consensus 135 ~PdA~lKiFLtAS~e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il 214 (222)
T COG0283 135 FPDAELKIFLTASPEERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKIL 214 (222)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHH
Confidence 567789999999999998876431 1111 10 222222221 22222211 67888877 99999999999
Q ss_pred HHHHHH
Q psy16874 209 DIVIDT 214 (227)
Q Consensus 209 ~~i~~~ 214 (227)
+.+.+.
T Consensus 215 ~~~~~~ 220 (222)
T COG0283 215 ELIRQK 220 (222)
T ss_pred HHHHHh
Confidence 988743
No 59
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.53 E-value=2.3e-13 Score=103.66 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=45.4
Q ss_pred CEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh-hC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874 147 DAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK-DN-IWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 147 d~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~-~~-~~~~Id~~~s~~~v~~~I~~~i 211 (227)
..+|||++|++++.+|+..|.......+.+......++... .. .+++||++++++++.+.|.+.|
T Consensus 95 ~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 95 LHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLADETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred EEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCCceEEEECCCCHHHHHHHHHHHH
Confidence 35799999999999999877543333333333333333221 11 7899999999999999888776
No 60
>KOG3354|consensus
Probab=99.53 E-value=4.7e-13 Score=98.32 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCH-----HHHHHHHHhhhhhhhhH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD-----QAAHLLFSANRWEREPT 84 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 84 (227)
.|++.|++||||||+++.|++.|++..++-++++-|. ..++ ...|..+.+ |+... ...
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~-------NveK-M~~GipLnD~DR~pWL~~i---------~~~ 76 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA-------NVEK-MTQGIPLNDDDRWPWLKKI---------AVE 76 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH-------HHHH-HhcCCCCCcccccHHHHHH---------HHH
Confidence 7999999999999999999999999888887776432 2222 233333322 22110 023
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCC---CEEEEeecCHHHHHH
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKP---DAVLLFKLNEEALQR 161 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---d~vi~L~~~~e~~~~ 161 (227)
....+..|+.|+.+|++|++.- |-+ .+... . ..+....| -.+|+|.++.|++.+
T Consensus 77 ~~~~l~~~q~vVlACSaLKk~Y---------RdI----Lr~sl---------~-~gk~~~~~~~~l~fi~l~~s~evi~~ 133 (191)
T KOG3354|consen 77 LRKALASGQGVVLACSALKKKY---------RDI----LRHSL---------K-DGKPGKCPESQLHFILLSASFEVILK 133 (191)
T ss_pred HHHHhhcCCeEEEEhHHHHHHH---------HHH----HHhhc---------c-cCCccCCccceEEEeeeeccHHHHHH
Confidence 3444557888888888887762 211 11100 0 01111122 369999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 162 RKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 162 R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
|+..|...+...+.++.+.+..+....+ +++.|+.. .++++..+.|.+-+.
T Consensus 134 Rl~~R~gHFMp~~lleSQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~ 187 (191)
T KOG3354|consen 134 RLKKRKGHFMPADLLESQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVA 187 (191)
T ss_pred HHhhcccccCCHHHHHHHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence 9999988898888887777666655443 68999977 888887777766554
No 61
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.52 E-value=2.5e-13 Score=104.51 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHH--HHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA--HLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~ 86 (227)
++|+++|.|||||||+++.|++.|...+..+.+..+-- ...+..+..++-+-. .-.+.-+.+ +.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy---------~~~i~~DEslpi~ke~yres~~ks~~---rlld 69 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY---------LRGILWDESLPILKEVYRESFLKSVE---RLLD 69 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh---------hhheecccccchHHHHHHHHHHHHHH---HHHH
Confidence 57999999999999999999999998887776654310 001111111111111 101111111 1233
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcc-cchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRY-SFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
.++. +..||+ |-- +++++-|+... ..+....+..+|||.+|++++.+|...
T Consensus 70 Salk-n~~VIv-----------------DdtNYyksmRrqL~c----------eak~~~tt~ciIyl~~plDtc~rrN~e 121 (261)
T COG4088 70 SALK-NYLVIV-----------------DDTNYYKSMRRQLAC----------EAKERKTTWCIIYLRTPLDTCLRRNRE 121 (261)
T ss_pred HHhc-ceEEEE-----------------ecccHHHHHHHHHHH----------HHHhcCCceEEEEEccCHHHHHHhhcc
Confidence 3333 778888 622 23344433322 123334677899999999999999976
Q ss_pred CCCCcccHHHHHHHHHHHHHHhhC-----CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 166 GDERYEQTDFQRKVAENYEKLKDN-----IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
+++.+. .+.++.+.+.|++.... ++.+||.+....++.+.|+..+.
T Consensus 122 rgepip-~Evl~qly~RfEePn~~~rWDspll~id~~d~~t~~IDfiesvl~ 172 (261)
T COG4088 122 RGEPIP-EEVLRQLYDRFEEPNPDRRWDSPLLVIDDSDVSTEVIDFIESVLR 172 (261)
T ss_pred CCCCCC-HHHHHHHHHhhcCCCCCccccCceEEEecccccccchhHHHHHHH
Confidence 665554 56777777777766543 88999976666666666666665
No 62
>PRK04040 adenylate kinase; Provisional
Probab=99.51 E-value=1.3e-12 Score=101.79 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=44.0
Q ss_pred CCCEEEEeecCHHHHHHhcCC---CCCCccc---HHHHHHHHHHHHHHhh---C--CeEEEcCCCCHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGF---GDERYEQ---TDFQRKVAENYEKLKD---N--IWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~---r~~~~~~---~~~~~~~~~~~~~~~~---~--~~~~Id~~~s~~~v~~~I~~~i 211 (227)
.||.+|+|.+||+++.+|... |.+.+++ .++.......|..... + ..+++|.++.+++++++|.++|
T Consensus 110 ~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 110 NPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred CCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 889999999999999888763 3333443 3444444444433322 1 3455555555999999988876
No 63
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.51 E-value=2.6e-13 Score=106.40 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=48.1
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.+|.++++++|++++.+|+..| +.++..+...++........ ....++|+++++++++..++.+.+..
T Consensus 124 ~~D~vi~V~a~~e~~~~Rl~~R-~~~s~e~~~~ri~~Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 124 LVDRVLVVDAPPETQLERLMAR-DGLSEEEAEAIIASQMPREEKLARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred hCCeEEEEECCHHHHHHHHHHc-CCCCHHHHHHHHHHhCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999875 33444455555543222111 11458999999999999998887753
No 64
>PRK00625 shikimate kinase; Provisional
Probab=99.50 E-value=2.6e-13 Score=104.26 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
+.|+++|+|||||||+++.|+++++..+++++.
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 359999999999999999999999877766654
No 65
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.49 E-value=9.3e-13 Score=101.61 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=58.5
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
.|..+|+|++|++++.+|+.+|.....+.+.+..+.+.++..... .|+.||++.+++++...+.+.+..+...
T Consensus 98 ~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 172 (176)
T PRK09825 98 PNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDIARIDVNHDIENVTEQCRQAVQAFRQA 172 (176)
T ss_pred CCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 566899999999999999988865555677777777766654332 7999999999999999999988876654
No 66
>PLN02199 shikimate kinase
Probab=99.49 E-value=4.8e-13 Score=109.48 Aligned_cols=164 Identities=13% Similarity=0.134 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
+++.|+++|++||||||+++.|++.+++..++++. +.+...+. .+.+++.. |.......+. +.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~----sI~eIf~~~GE~~FR~~E~-----------e~ 165 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGT----SVAEIFVHHGENFFRGKET-----------DA 165 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCC----CHHHHHHHhCHHHHHHHHH-----------HH
Confidence 46789999999999999999999999887766654 22211122 22333332 2111111111 34
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
+.........||. +++|+|++ ...+..+ . --.+|||++|++++.+|+.
T Consensus 166 L~~L~~~~~~VIS----------tGGG~V~~--------------~~n~~~L---~-----~G~vV~Ldas~E~l~~RL~ 213 (303)
T PLN02199 166 LKKLSSRYQVVVS----------TGGGAVIR--------------PINWKYM---H-----KGISIWLDVPLEALAHRIA 213 (303)
T ss_pred HHHHHhcCCEEEE----------CCCcccCC--------------HHHHHHH---h-----CCeEEEEECCHHHHHHHHh
Confidence 4444444455554 67777777 1111222 1 1369999999999999997
Q ss_pred C--C--CCCcc--c-HHH---HHHHHHHHHHHh---hCCeEEEc-------------CCCCHHHHHHHHHHHHHHHhhh
Q psy16874 165 F--G--DERYE--Q-TDF---QRKVAENYEKLK---DNIWIDID-------------ADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 165 ~--r--~~~~~--~-~~~---~~~~~~~~~~~~---~~~~~~Id-------------~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
. . ++... + +.+ .+.+.+.|++.. ..-.++|+ .+.++++++.+|.+.+..+++.
T Consensus 214 ~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~ 292 (303)
T PLN02199 214 AVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK 292 (303)
T ss_pred hcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 4 1 12221 1 111 233333332221 11225566 3489999999999999999875
No 67
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.48 E-value=3.4e-13 Score=112.97 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=92.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhh
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
++++..|+|+|++||||||+++.|++.++...++++...+...+.. +.+++.. +..... ....+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~----i~ei~~~~G~~~fr-----------~~e~~ 194 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLS----VSEIFALYGQEGYR-----------RLERR 194 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCC----HHHHHHHHCHHHHH-----------HHHHH
Confidence 4567899999999999999999999999776554332111111111 1122111 100000 00112
Q ss_pred HHHHHHHc-CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 84 TLTKLIEQ-GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 84 ~i~~~~~~-~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
.+...+.. +..|+. .++|++.+ ...+ .++. ...++|||++|++++.+|
T Consensus 195 ~l~~ll~~~~~~VI~----------~Ggg~v~~-----~~~~---------~~l~-------~~~~~V~L~a~~e~~~~R 243 (309)
T PRK08154 195 ALERLIAEHEEMVLA----------TGGGIVSE-----PATF---------DLLL-------SHCYTVWLKASPEEHMAR 243 (309)
T ss_pred HHHHHHhhCCCEEEE----------CCCchhCC-----HHHH---------HHHH-------hCCEEEEEECCHHHHHHH
Confidence 34444433 334443 45555554 1100 1121 234799999999999999
Q ss_pred cCCCCCC---cc---cHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHhhh
Q psy16874 163 KGFGDER---YE---QTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 163 ~~~r~~~---~~---~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l~~ 217 (227)
+..+... .. ..+.+..+......+.....++||++ .+++++.+.|.+.+...+.-
T Consensus 244 l~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t~~~s~ee~~~~I~~~l~~~~~~ 305 (309)
T PRK08154 244 VRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDTSGLTVAQSLARLRELVRPALGL 305 (309)
T ss_pred HhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence 9764311 11 12333333333333332233678877 49999999999999877653
No 68
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.47 E-value=8.4e-13 Score=102.85 Aligned_cols=166 Identities=10% Similarity=0.097 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe-E-EeeCCCCCC------CchHHHHHHHhhcCCCCHHHHHHHHHhhhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS-Q-FVNFPDRTI------STGHIIDEYLRKKIELPDQAAHLLFSANRW 79 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~-~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
+.+|+|.||+||||||+++.|+..++.. +.. + .+..+.... ..++.....+..+ .+ .....+..+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~g~~y 76 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQ-LLVAHRYITRPASAGSENHIALSEQEFFTRAGQN-LF---ALSWHANGLYY 76 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCe-EEEcCEECCCccchhHHhheeEcHHHHHHHHHCC-ch---hhHHHHhCCcc
Confidence 4579999999999999999998876531 111 1 111111000 0011111111111 10 00101111222
Q ss_pred hhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHH
Q psy16874 80 EREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEAL 159 (227)
Q Consensus 80 ~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~ 159 (227)
.....+...+..|..||+ | +.. .....+....+.+-.+|||++|++++
T Consensus 77 g~~~~~~~~l~~g~~VI~-----------------~-----G~~----------~~~~~~~~~~~~~~~vi~l~~s~e~l 124 (186)
T PRK10078 77 GVGIEIDLWLHAGFDVLV-----------------N-----GSR----------AHLPQARARYQSALLPVCLQVSPEIL 124 (186)
T ss_pred CCcHHHHHHHhCCCEEEE-----------------e-----ChH----------HHHHHHHHHcCCCEEEEEEeCCHHHH
Confidence 333346667777877777 5 110 11111112223455789999999999
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 160 QRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 160 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
.+|+..|.... ..+...++.. +........++||+++++++++++|.+.+.
T Consensus 125 ~~RL~~R~~~~-~~~i~~rl~r-~~~~~~ad~~vi~~~~s~ee~~~~i~~~l~ 175 (186)
T PRK10078 125 RQRLENRGREN-ASEINARLAR-AARYQPQDCHTLNNDGSLRQSVDTLLTLLH 175 (186)
T ss_pred HHHHHHhCCCC-HHHHHHHHHH-hhhhccCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 99997553222 1233334322 111112266889989999999999988875
No 69
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.44 E-value=2.7e-12 Score=99.01 Aligned_cols=167 Identities=14% Similarity=0.040 Sum_probs=87.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEeeCCCCCCCchHHHHHHHhhc--CCCCHHHHHHHHHhhhhhhhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVNFPDRTISTGHIIDEYLRKK--IELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+++|+++|+|||||||+++.|.+.++.. ++.++.+........... ...+..++ ...+.......|.+ ...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~----~~~ 76 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA-EGGIEFDGDGGVSPGPEFRLLEGA----WYE 76 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc-ccccccCccCCcccchHHHHHHHH----HHH
Confidence 6789999999999999999999988653 334443221100000000 00000011 11111111111111 123
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhh-hhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA-FSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
.+...+..|..||+ |-- +. +.... ..+..+ ...+-..|+|.||++++.+|
T Consensus 77 ~~~~~l~~G~~VIv-----------------D~~----~~~~~~~r-----~~~~~~---~~~~~~~v~l~~~~~~l~~R 127 (175)
T cd00227 77 AVAAMARAGANVIA-----------------DDV----FLGRAALQ-----DCWRSF---VGLDVLWVGVRCPGEVAEGR 127 (175)
T ss_pred HHHHHHhCCCcEEE-----------------eee----ccCCHHHH-----HHHHHh---cCCCEEEEEEECCHHHHHHH
Confidence 45567788988888 611 11 00000 111111 12355799999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874 163 KGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIV 211 (227)
Q Consensus 163 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i 211 (227)
..+|++... .......+.+... ....++||++ .+++++++.|.+.|
T Consensus 128 ~~~R~~~~~--~~~~~~~~~~~~~-~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 128 ETARGDRVP--GQARKQARVVHAG-VEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred HHhcCCccc--hHHHHHHHHhcCC-CcceEEEECCCCCHHHHHHHHHHhc
Confidence 987654421 1111112222221 1157899988 57999988888765
No 70
>PRK06217 hypothetical protein; Validated
Probab=99.44 E-value=2.9e-12 Score=99.56 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
+.|+|.|++||||||+++.|++.++..+++.+. +..|. +.+.... .+.... ...+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~-~~~~~~~----------~~~~~~-----------~~~~~~ 59 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT-DPPFTTK----------RPPEER-----------LRLLLE 59 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC-CCCcccc----------CCHHHH-----------HHHHHH
Confidence 459999999999999999999999877766654 33332 1111110 011100 022222
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
.+..+..+|+ | +.+.. +... ....+|.+|||++|++++.+|+..|.
T Consensus 60 ~~~~~~~~vi-----------------~-----G~~~~---------~~~~---~~~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 60 DLRPREGWVL-----------------S-----GSALG---------WGDP---LEPLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred HHhcCCCEEE-----------------E-----ccHHH---------HHHH---HHhhCCEEEEEECCHHHHHHHHHcCc
Confidence 3323323344 5 33221 1111 11257899999999999999997653
Q ss_pred CC-----------cc--cHHHHHHH------------HHHHHHHhh---CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 168 ER-----------YE--QTDFQRKV------------AENYEKLKD---NIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 168 ~~-----------~~--~~~~~~~~------------~~~~~~~~~---~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.. .+ ..++++.. ...++.+.. .+++.+++..++++..++|.+.|..
T Consensus 106 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 106 FQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred ccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 11 01 12222221 112222322 2677889999999988888888753
No 71
>PRK01184 hypothetical protein; Provisional
Probab=99.43 E-value=9.2e-12 Score=96.72 Aligned_cols=72 Identities=7% Similarity=0.044 Sum_probs=46.5
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCC--Cccc-HHHHHHHHHHH----HHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDE--RYEQ-TDFQRKVAENY----EKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~--~~~~-~~~~~~~~~~~----~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
.+..+|++++|++++.+|+..|+. +..+ .+...+..... .+.....-++||++++++++..+|.+.+..+++
T Consensus 103 ~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 103 EDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADYMIVNDSTLEEFRARVRKLLERILR 181 (184)
T ss_pred cccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 466899999999999999976532 1112 22333332211 111111346788889999999999998886654
No 72
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.43 E-value=1.2e-12 Score=117.41 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=96.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
.+...|+++|++||||||+++.|++.|++..++.+. +.+. .|..+.+++.. |.......+. +
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~-----~g~si~eif~~~Ge~~FR~~E~-----------~ 67 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE-----IGMSIPSYFEEYGEPAFREVEA-----------D 67 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH-----HCcCHHHHHHHHHHHHHHHHHH-----------H
Confidence 445679999999999999999999999887777654 2211 12233444432 2211111211 3
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
.+.+.+.....||. +++|++++ . .....+..+.+. --.+|||++|++++.+|+
T Consensus 68 ~l~~~~~~~~~VIs----------~GGG~v~~-----~---------~n~~~L~~~~~~---~g~vv~L~~~~~~l~~Rl 120 (542)
T PRK14021 68 VVADMLEDFDGIFS----------LGGGAPMT-----P---------STQHALASYIAH---GGRVVYLDADPKEAMERA 120 (542)
T ss_pred HHHHHHhcCCeEEE----------CCCchhCC-----H---------HHHHHHHHHHhc---CCEEEEEECCHHHHHHHH
Confidence 44444444455554 78888887 1 111222211111 137999999999999998
Q ss_pred CCCC--CCccc--HHHHHHH----HHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 164 GFGD--ERYEQ--TDFQRKV----AENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 164 ~~r~--~~~~~--~~~~~~~----~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
..+. +.+.. .+.+..+ ...|++.+. ++||++ .+++++.++|.+.+..
T Consensus 121 ~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad---~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 121 NRGGGRPMLNGDANKRWKKLFKQRDPVFRQVAN---VHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred hCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHHh
Confidence 6432 22321 2222222 334554443 677765 7999999999888863
No 73
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.42 E-value=4.1e-12 Score=99.59 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee-CC-CCCCCchHHHHHHHhh-----cC-CCCHHHHHHHHHhhhhh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN-FP-DRTISTGHIIDEYLRK-----KI-ELPDQAAHLLFSANRWE 80 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~ 80 (227)
++|+|+|++||||||+++.|++.++...++++.+. +. ..+.+....+.+.+.. .+ .++........+.+...
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 47999999999999999999998888787776532 21 1134444555544432 22 33433322222222111
Q ss_pred ---hhhHHHHHH--------Hc---CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCC
Q psy16874 81 ---REPTLTKLI--------EQ---GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKP 146 (227)
Q Consensus 81 ---~~~~i~~~~--------~~---~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 146 (227)
....++|.+ .. ...+++ | . +.+.+... ....
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~-----------------e------~-----------pll~E~~~-~~~~ 126 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVL-----------------V------I-----------PLLFEAKL-TDLC 126 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEE-----------------E------e-----------HHhcCcch-HhCC
Confidence 111223321 11 123333 3 1 11111100 1146
Q ss_pred CEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHH
Q psy16874 147 DAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 147 d~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i 211 (227)
|.+++++||++++.+|+..|. .++..+...++...+.... ....++|+++++++++..++.+.+
T Consensus 127 D~ii~V~a~~e~r~~Rl~~R~-g~s~e~~~~ri~~Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 127 SEIWVVDCSPEQQLQRLIKRD-GLTEEEAEARINAQWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred CEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence 899999999999999998763 3443445555544221111 114578999999999999888765
No 74
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.41 E-value=1.6e-12 Score=98.87 Aligned_cols=166 Identities=17% Similarity=0.281 Sum_probs=98.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSA 76 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (227)
.+|++|+|.||+|+||||+++.|-+.. ...+++-. ++.|+.+..-| +.++.++..+. +.. ...+..
T Consensus 2 ~~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~-fLE---~a~~~g 76 (191)
T COG0194 2 SKGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDE-FLE---WAEYHG 76 (191)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCC-cEE---EEEEcC
Confidence 369999999999999999999999988 44666644 67665544322 23344444332 111 111112
Q ss_pred hhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec-
Q psy16874 77 NRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL- 154 (227)
Q Consensus 77 ~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~- 154 (227)
+.+.. ...+.+.+..|..|+. | .+++-..++....| +...||+.+
T Consensus 77 nyYGT~~~~ve~~~~~G~~vil-----------------d---------------Id~qGa~qvk~~~p-~~v~IFi~pP 123 (191)
T COG0194 77 NYYGTSREPVEQALAEGKDVIL-----------------D---------------IDVQGALQVKKKMP-NAVSIFILPP 123 (191)
T ss_pred CcccCcHHHHHHHHhcCCeEEE-----------------E---------------EehHHHHHHHHhCC-CeEEEEEcCC
Confidence 23332 2456677788888887 4 22222233333443 334555554
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 155 NEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 155 ~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
+.+++.+|+..|+...+ ....+++..++.+.... ..++||. +.+.+++++..++.
T Consensus 124 s~eeL~~RL~~Rgtds~-e~I~~Rl~~a~~Ei~~~~~fdyvivNd--d~e~a~~~l~~ii~ 181 (191)
T COG0194 124 SLEELERRLKGRGTDSE-EVIARRLENAKKEISHADEFDYVIVND--DLEKALEELKSIIL 181 (191)
T ss_pred CHHHHHHHHHccCCCCH-HHHHHHHHHHHHHHHHHHhCCEEEECc--cHHHHHHHHHHHHH
Confidence 45788889986654332 33445565555555433 6666655 58888888888875
No 75
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.41 E-value=6.8e-12 Score=110.68 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
++++|+|.|++||||||+++.|+++|+...++.+.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~ 317 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGA 317 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCc
Confidence 67899999999999999999999999877776544
No 76
>PRK08356 hypothetical protein; Provisional
Probab=99.41 E-value=1.7e-11 Score=96.22 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=42.0
Q ss_pred CEEEEeecCHHHHHHhcCCCCCC----cccHHHHHHHHH----HHHHH--hhCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 147 DAVLLFKLNEEALQRRKGFGDER----YEQTDFQRKVAE----NYEKL--KDNIWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 147 d~vi~L~~~~e~~~~R~~~r~~~----~~~~~~~~~~~~----~~~~~--~~~~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
..+|||++|++++.+|+..|... ..+.+.+.++.. .|... ...--++|+++++++++..+|.+++..+
T Consensus 116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILREL 193 (195)
T ss_pred CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 47999999999999999765322 122333333321 12111 0112245555789999999999888754
No 77
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.40 E-value=2.1e-12 Score=99.90 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=43.8
Q ss_pred CEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 147 DAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 147 d~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
..+|||++|++++.+|+..|+.... .....++.. +.... ...+++|+++++++++.++|.+.+.
T Consensus 112 ~~~i~l~~~~~~~~~Rl~~R~~~~~-~~~~~rl~~-~~~~~~~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 112 LLVVNITASPDVLAQRLAARGRESR-EEIEERLAR-SARFAAAPADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred cEEEEEECCHHHHHHHHHHcCCCCH-HHHHHHHHH-HhhcccccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 3799999999999999986543221 233334432 22221 1267778999999999999988774
No 78
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.40 E-value=8.3e-12 Score=98.92 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=49.6
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
.+|.+|++.+|++++.+|+.+|+.. ...+..+++...+.... ....++|+++++++++..+|.+.+..++
T Consensus 133 ~~d~ii~V~a~~e~~~~Rl~~R~~~-s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 133 GLDFIVVVAADTELRLERAVQRGMG-SREEIRRRIAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred cCCeEEEEECCHHHHHHHHHHcCCC-CHHHHHHHHHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 4699999999999999999876432 32444455543221111 1145788999999999999998887665
No 79
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.40 E-value=7.3e-12 Score=97.42 Aligned_cols=169 Identities=12% Similarity=0.150 Sum_probs=92.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSA 76 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (227)
.+|++|+|+||+||||||+++.|.+.++...+++.+ ++.|..+..-| +.+...+..+.- -.+. .|.-
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f-~e~~---~~~g 77 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEF-LEWA---EVHD 77 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCe-EEEE---EECC
Confidence 358999999999999999999999876544444433 55443332211 122223222220 0000 0000
Q ss_pred hhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec-
Q psy16874 77 NRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL- 154 (227)
Q Consensus 77 ~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~- 154 (227)
..+.. ...+...+..|.++|+ | .+.+-+..+....+.+-++||+.+
T Consensus 78 ~~YGt~~~~i~~~~~~g~~~i~-----------------d---------------~~~~g~~~l~~~~~~~~~~Ifi~pp 125 (186)
T PRK14737 78 NYYGTPKAFIEDAFKEGRSAIM-----------------D---------------IDVQGAKIIKEKFPERIVTIFIEPP 125 (186)
T ss_pred eeecCcHHHHHHHHHcCCeEEE-----------------E---------------cCHHHHHHHHHhCCCCeEEEEEECC
Confidence 11111 1357777888888887 5 111222222222222226888887
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh-C-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 155 NEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD-N-IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 155 ~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
+.+++.+|+..|+... ..+...++..+..+... . .-++|+++ +++++..++.++|.
T Consensus 126 s~e~l~~RL~~R~~~s-~e~i~~Rl~~~~~e~~~~~~~D~vI~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 126 SEEEWEERLIHRGTDS-EESIEKRIENGIIELDEANEFDYKIIND-DLEDAIADLEAIIC 183 (186)
T ss_pred CHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHHh
Confidence 4689999997764432 23344444443322221 1 34566666 89999988888775
No 80
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.40 E-value=1.8e-12 Score=114.52 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
|.|+|+|++||||||+++.|++.++...++.+...+...+.+ +.+++.. +.......+ .+.+.+
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~----i~~i~~~~Ge~~fr~~E-----------~~~l~~ 65 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRS----VRRIFEEDGEEYFRLKE-----------KELLRE 65 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCC----HHHHHHHhhhHHHHHHH-----------HHHHHH
Confidence 359999999999999999999999876666554221111111 2222222 111111111 133444
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
.......|+. +++|+|+|. .....+. ...+|||++|++++.+|+..+.
T Consensus 66 l~~~~~~Vis----------~Gggvv~~~--------------~~r~~l~--------~~~vI~L~as~e~l~~Rl~~~~ 113 (488)
T PRK13951 66 LVERDNVVVA----------TGGGVVIDP--------------ENRELLK--------KEKTLFLYAPPEVLMERVTTEN 113 (488)
T ss_pred HhhcCCEEEE----------CCCccccCh--------------HHHHHHh--------cCeEEEEECCHHHHHHHhccCC
Confidence 4444455554 688888882 1112231 1359999999999999997543
Q ss_pred CC-cccHHHHHHHHHHHHHHhhC--CeEEEcCC-CCHHHHHHHH
Q psy16874 168 ER-YEQTDFQRKVAENYEKLKDN--IWIDIDAD-KDIDTLGLIV 207 (227)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~--~~~~Id~~-~s~~~v~~~I 207 (227)
+. .... .+++.+.|+....- .+.+||++ .+++++..+|
T Consensus 114 RPLl~~~--~e~l~~L~~~R~~lY~~~~~IDt~~~s~~e~~~~i 155 (488)
T PRK13951 114 RPLLREG--KERIREIWERRKQFYTEFRGIDTSKLNEWETTALV 155 (488)
T ss_pred CCCcccc--HHHHHHHHHHHHHHHhcccEEECCCCCHHHHHHHH
Confidence 22 2211 12233333322211 34678876 6676665544
No 81
>PRK04182 cytidylate kinase; Provisional
Probab=99.40 E-value=2.7e-12 Score=99.07 Aligned_cols=71 Identities=15% Similarity=0.066 Sum_probs=45.4
Q ss_pred CCEEEEeecCHHHHHHhcCCCCCC-ccc-HHHHH----HHHHHHHHHhh-------CCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKGFGDER-YEQ-TDFQR----KVAENYEKLKD-------NIWIDIDAD-KDIDTLGLIVKDIV 211 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r~~~-~~~-~~~~~----~~~~~~~~~~~-------~~~~~Id~~-~s~~~v~~~I~~~i 211 (227)
++++|||++|++++.+|+..|... ... ..... .-...|..+.. ...++||++ .+++++.+.|.+.+
T Consensus 92 ~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~ 171 (180)
T PRK04182 92 ADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAI 171 (180)
T ss_pred CCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHH
Confidence 789999999999999999765432 111 11111 11123333321 134788876 79999999999988
Q ss_pred HHHhh
Q psy16874 212 IDTIK 216 (227)
Q Consensus 212 ~~~l~ 216 (227)
.....
T Consensus 172 ~~~~~ 176 (180)
T PRK04182 172 DKLLK 176 (180)
T ss_pred HHHhc
Confidence 75443
No 82
>PLN02422 dephospho-CoA kinase
Probab=99.39 E-value=4.4e-12 Score=101.36 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHH--HhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK--LKDNIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
..|.+|+++||+++..+|+.+|. .+...+...++...+.. ......++|+++++.+++..++.+.+..++
T Consensus 125 ~~D~vI~V~a~~e~ri~RL~~R~-g~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 125 WTKPVVVVWVDPETQLERLMARD-GLSEEQARNRINAQMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHHcCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 46999999999999999998764 34334555555443322 111145799999999999999998887764
No 83
>KOG3078|consensus
Probab=99.39 E-value=3e-12 Score=101.26 Aligned_cols=173 Identities=20% Similarity=0.217 Sum_probs=120.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
++.-.++.|+|||||+|++..|.+.++..|++..+ ++. ...+++.|..++.++..+..+++.... ..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~-----------~~ 82 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVV-----------RL 82 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHH-----------HH
Confidence 46678999999999999999999999999988766 443 224677888889999999988887766 32
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
+...+... .+.+||++| ++|++..+. .. +......+|.+|.|.+|.+.+.+|+.
T Consensus 83 l~~~l~~~--------------~~~~~~ild-----g~Prt~~qa----~~---l~~~~~~~d~Vi~l~vp~~~L~~ri~ 136 (235)
T KOG3078|consen 83 LEKRLENP--------------RCQKGFILD-----GFPRTVQQA----EE---LLDRIAQIDLVINLKVPEEVLVDRIT 136 (235)
T ss_pred HHhhcccc--------------ccccccccC-----CCCcchHHH----HH---HHHccCCcceEEEecCCHHHHHHHHh
Confidence 22233332 357889999 888776642 11 23344588999999999999999985
Q ss_pred CC------C---------------C------Cccc----HHHHHHHHHHHHHHhhC---------CeEEEcCCCCHHHHH
Q psy16874 165 FG------D---------------E------RYEQ----TDFQRKVAENYEKLKDN---------IWIDIDADKDIDTLG 204 (227)
Q Consensus 165 ~r------~---------------~------~~~~----~~~~~~~~~~~~~~~~~---------~~~~Id~~~s~~~v~ 204 (227)
.| + + ..++ .+..+...+.|.+.... .+..+++.. +++++
T Consensus 137 ~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~ 215 (235)
T KOG3078|consen 137 GRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVF 215 (235)
T ss_pred cccccCcccceecccccCCccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhH
Confidence 43 0 0 1111 23333334445443321 577777777 89999
Q ss_pred HHHHHHHHHHhhh
Q psy16874 205 LIVKDIVIDTIKK 217 (227)
Q Consensus 205 ~~I~~~i~~~l~~ 217 (227)
..|...+...+.+
T Consensus 216 ~~v~~~l~~~~~~ 228 (235)
T KOG3078|consen 216 PNVYAFLSKKVPE 228 (235)
T ss_pred HHHHHHHHhhhhh
Confidence 9999888766644
No 84
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.39 E-value=4.4e-12 Score=96.68 Aligned_cols=69 Identities=9% Similarity=0.100 Sum_probs=55.1
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.|-.+|+|++|++++.+|+..|.+.+.+.+.+..+...++.+... .+++||++.+++++.+.+...+.+
T Consensus 90 ~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 90 PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred CCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 566899999999999999988765455677777777677655443 489999999999999988888753
No 85
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.39 E-value=2.8e-11 Score=95.58 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=89.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE-EeeCCCCCCCc--------hHHHHHHHhhcCCCCHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ-FVNFPDRTIST--------GHIIDEYLRKKIELPDQAAHLLFS 75 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 75 (227)
++++.+|+|.|++||||||+++.|...++..++.+. .+++|..+... .+.+...+..+..+... .+.
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWA----EVF 77 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEE----EEC
Confidence 356899999999999999999999998763233322 24445432211 11222222222110000 000
Q ss_pred hhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec
Q psy16874 76 ANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL 154 (227)
Q Consensus 76 ~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~ 154 (227)
.+.+.. ...+...+..|.++++ | .-+ .....+....+.+-.++++.+
T Consensus 78 ~~~y~~~~~~i~~~l~~g~~vi~-----------------d-----l~~----------~g~~~l~~~~~~~~~I~i~~~ 125 (205)
T PRK00300 78 GNYYGTPRSPVEEALAAGKDVLL-----------------E-----IDW----------QGARQVKKKMPDAVSIFILPP 125 (205)
T ss_pred CccccCcHHHHHHHHHcCCeEEE-----------------e-----CCH----------HHHHHHHHhCCCcEEEEEECc
Confidence 011111 2456777788888887 5 101 111111122223333555567
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH---hhCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 155 NEEALQRRKGFGDERYEQTDFQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 155 ~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
+.+++.+|+..|+... .....+++....... .....+++| .+++++..++.+.+...
T Consensus 126 s~~~l~~Rl~~R~~~~-~~~i~~rl~~~~~~~~~~~~~d~vi~n--~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 126 SLEELERRLRGRGTDS-EEVIARRLAKAREEIAHASEYDYVIVN--DDLDTALEELKAIIRAE 185 (205)
T ss_pred CHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhHHhCCEEEEC--CCHHHHHHHHHHHHHHH
Confidence 7899999998765322 122223333222211 112455543 38999999999999875
No 86
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.39 E-value=8.5e-12 Score=98.22 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
.+|.+||+++|+++..+|+..|+ .+...+...++........ ....++||++++++++..++...+..+++
T Consensus 125 ~~D~vi~V~a~~e~ri~Rl~~R~-g~s~e~~~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 125 KMDLVVVVDVDVEERVRRLVEKR-GLDEDDARRRIAAQIPDDVRLKAADIVVDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence 57999999999999999997653 3443444445543222111 11457999999999999999988876654
No 87
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.37 E-value=7.6e-12 Score=98.31 Aligned_cols=69 Identities=13% Similarity=-0.002 Sum_probs=48.9
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCC-CHHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADK-DIDTLGLIVKDIVIDT 214 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~-s~~~v~~~I~~~i~~~ 214 (227)
..|.++++.||+++..+|+..|+ .+...+...++........ ...-++||+++ +.+++..++.+.+...
T Consensus 128 ~~D~vi~V~a~~e~ri~Rl~~Rd-~~s~~~a~~ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 128 YLKKVIVIKADLETRIRRLMERD-GKNRQQAVAFINLQISDKEREKIADFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999998753 3344455555544221111 11348999999 9999999998888755
No 88
>KOG3347|consensus
Probab=99.36 E-value=5.8e-12 Score=92.11 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhhc---CCCCHHHHHHHHHhhhhhhhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRKK---IELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 83 (227)
.+.|+|+|.||+||||+++.|++.++..+|.+.. .++.. +..-+... .-++..... +
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~--------l~~gyDE~y~c~i~DEdkv~-----------D 67 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN--------LYEGYDEEYKCHILDEDKVL-----------D 67 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc--------chhcccccccCccccHHHHH-----------H
Confidence 4569999999999999999999999998888755 33211 11111110 011222222 5
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
.+.+.+..|.+|+ |.+..+-|| ..|+ |+|++|++|.++++.|+
T Consensus 68 ~Le~~m~~Gg~IV------------------DyHgCd~Fp---------erwf----------dlVvVLr~~~s~LY~RL 110 (176)
T KOG3347|consen 68 ELEPLMIEGGNIV------------------DYHGCDFFP---------ERWF----------DLVVVLRTPNSVLYDRL 110 (176)
T ss_pred HHHHHHhcCCcEE------------------eecccCccc---------hhhe----------eEEEEEecCchHHHHHH
Confidence 6666666665443 744443333 2444 79999999999999999
Q ss_pred CCCCCC---cc-c--HHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874 164 GFGDER---YE-Q--TDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 164 ~~r~~~---~~-~--~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i 211 (227)
..|+=. +. + -+.+..+.+...+.... .+..+.+ .+.+++.+.|-+++
T Consensus 111 ~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~s-~~~Eem~~ni~ri~ 164 (176)
T KOG3347|consen 111 KSRGYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQS-ETKEEMESNISRIL 164 (176)
T ss_pred HHcCCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecCc-CCHHHHHHHHHHHH
Confidence 876411 11 1 34455555544444443 4444444 44577666654444
No 89
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.36 E-value=3.7e-12 Score=106.36 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH-HhCCCCeEEeeCCCCCCCchHHHHHHHhhc---CC-CCHHHHHHHHHhhhhhhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVNFPDRTISTGHIIDEYLRKK---IE-LPDQAAHLLFSANRWERE 82 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ 82 (227)
+++|++.|+|||||||+++.|++++ +..+++.+.+++. ..... .. ......... .....
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~------------~~~~~~~~~~~~~~~~~~~~----~~~~~ 65 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQS------------LFGHGEWGEYKFTKEKEDLV----TKAQE 65 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHH------------hcCCCcccccccChHHHHHH----HHHHH
Confidence 4689999999999999999999998 4544444332211 11100 00 010011100 00111
Q ss_pred hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
..+..++..|..+|+ |-+..+...+ ..+..+.......-.+|+|++|.+++.+|
T Consensus 66 ~~~~~~l~~g~~vIi-----------------d~~~~~~~~~---------~~~~~la~~~~~~~~~v~l~~~~e~~~~R 119 (300)
T PHA02530 66 AAALAALKSGKSVII-----------------SDTNLNPERR---------RKWKELAKELGAEFEEKVFDVPVEELVKR 119 (300)
T ss_pred HHHHHHHHcCCeEEE-----------------eCCCCCHHHH---------HHHHHHHHHcCCeEEEEEeCCCHHHHHHH
Confidence 344555667777777 7333221111 22222222222223479999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHhh------------CCeEEEcCCCCHHH
Q psy16874 163 KGFGDERYEQTDFQRKVAENYEKLKD------------NIWIDIDADKDIDT 202 (227)
Q Consensus 163 ~~~r~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Id~~~s~~~ 202 (227)
+..|+....+.+.+..+.+.++.+.. ...+++|.++++.+
T Consensus 120 ~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 120 NRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred HHccCcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 98875444456666655555555432 15788888877654
No 90
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.35 E-value=1.7e-11 Score=98.84 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=48.4
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCC--CCHHHHHHHHHHHHHHHh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD--NIWIDIDAD--KDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~--~s~~~v~~~I~~~i~~~l 215 (227)
..|.++++.+|.++..+|+..|+ .+...+...++......... ..-++|+++ ++++++..+|.+.+..+.
T Consensus 136 ~~D~iv~V~a~~e~ri~RL~~R~-g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 136 FVSASVVVSCSEERQIERLRKRN-GFSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 45999999999999999998763 34434455555432211111 134678888 999999999999886543
No 91
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.35 E-value=1.6e-11 Score=95.34 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=87.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++|.+|+|+|++||||||+++.|...+...+..+..+. ++.++..+..+..+.+......+. ......
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~--------~d~~r~~l~~~~~~~~~~~~~~~~----~~~~~~ 83 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD--------GDNVRHGLNKDLGFSEEDRKENIR----RIGEVA 83 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC--------ChHHHhhhccccCCCHHHHHHHHH----HHHHHH
Confidence 56889999999999999999999999987676655543 112222222221122211111010 001233
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
...+..|.+||+ |- .+++...+ ..+..+... .+..+|||++|++++.+|...
T Consensus 84 ~~~~~~G~~VI~-----------------d~----~~~~~~~r-----~~~~~~~~~--~~~~~v~l~~~~e~~~~R~~~ 135 (184)
T TIGR00455 84 KLFVRNGIIVIT-----------------SF----ISPYRADR-----QMVRELIEK--GEFIEVFVDCPLEVCEQRDPK 135 (184)
T ss_pred HHHHcCCCEEEE-----------------ec----CCCCHHHH-----HHHHHhCcC--CCeEEEEEeCCHHHHHHhCch
Confidence 344567888888 51 11111111 222222222 245789999999999999432
Q ss_pred CCCCccc-----HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHH
Q psy16874 166 GDERYEQ-----TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDI 210 (227)
Q Consensus 166 r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~ 210 (227)
+.+.. ...+......|+.+. ...++||++ .++++++++|.+.
T Consensus 136 --~l~~~~~~~~~~~l~~~~~~y~~p~-~adl~Idt~~~~~~~~~~~i~~~ 183 (184)
T TIGR00455 136 --GLYKKARNGEIKGFTGIDSPYEAPE-NPEVVLDTDQNDREECVGQIIEK 183 (184)
T ss_pred --hHHHHHhcCCccCcccccCCCCCCC-CCcEEEECCCCCHHHHHHHHHHh
Confidence 11111 011112222343211 156899876 6899988887764
No 92
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.35 E-value=1.2e-11 Score=92.78 Aligned_cols=147 Identities=21% Similarity=0.261 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHH--HHHHHHHhhhhhhhhH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQ--AAHLLFSANRWEREPT 84 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 84 (227)
+|.+|+|+|.+||||||++..|.++|...++++..+. |+.++..+.++-.+..+ .+... |.. ..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD--------gD~lR~~l~~dl~fs~~dR~e~~r----r~~--~~ 66 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD--------GDNLRHGLNADLGFSKEDREENIR----RIA--EV 66 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE--------HHHHCTTTTTT--SSHHHHHHHHH----HHH--HH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec--------CcchhhccCCCCCCCHHHHHHHHH----HHH--HH
Confidence 4889999999999999999999999999999998877 45554444333222221 11110 010 22
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
..-...+|.+||+ . . .-|+...+ ++..+.... ..-+.||++||.+++.+|-.
T Consensus 67 A~ll~~~G~ivIv-----------------a--~--isp~~~~R-----~~~R~~~~~--~~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 67 AKLLADQGIIVIV-----------------A--F--ISPYREDR-----EWARELIPN--ERFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp HHHHHHTTSEEEE-----------------E--------SHHHH-----HHHHHHHHT--TEEEEEEEES-HHHHHHHTT
T ss_pred HHHHHhCCCeEEE-----------------e--e--ccCchHHH-----HHHHHhCCc--CceEEEEeCCCHHHHHHhCc
Confidence 2334568888888 3 0 11111111 222222111 13479999999999999986
Q ss_pred CCCCCccc-----HHHHHHHHHHHHHHhhCCeEEEcCCC
Q psy16874 165 FGDERYEQ-----TDFQRKVAENYEKLKDNIWIDIDADK 198 (227)
Q Consensus 165 ~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Id~~~ 198 (227)
++ .|.. ...+--+...|+.... +-++||++.
T Consensus 119 Kg--lY~ka~~g~i~~~~Gvd~~ye~P~~-pdl~idt~~ 154 (156)
T PF01583_consen 119 KG--LYAKARAGEIKNFTGVDDPYEEPLN-PDLVIDTDK 154 (156)
T ss_dssp TS--HHHHHHTTSSSSHTTTSS-----SS--SEEEETTT
T ss_pred hh--HHHHhhCCCcCCccccccCCCCCCC-CeEEEeCCC
Confidence 52 2221 0111122335555433 567888764
No 93
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.35 E-value=8.9e-12 Score=93.77 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
|+|+|++||||||+++.|++.+++..++.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~ 32 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDE 32 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 8999999999999999999999877666544
No 94
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.34 E-value=2.6e-11 Score=99.40 Aligned_cols=147 Identities=15% Similarity=0.182 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
++|+|+|.|||||||+++.|++.+...+..+..+... .+. +..........+.. .|......+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~--------~~~--~~~~~y~~~~~Ek~----~R~~l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD--------SLG--IDRNDYADSKKEKE----ARGSLKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH--------HHH---TTSSS--GGGHHH----HHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc--------ccc--cchhhhhchhhhHH----HHHHHHHHHHHh
Confidence 4899999999999999999999999988888776631 111 11111111111110 111122355556
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCc-ccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDR-YSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
+..+.+||+ |. .++.++-|..++ +.+....+..+||+++|.+.+.+|-..|+
T Consensus 68 ls~~~iVI~-----------------Dd~nYiKg~RYelyc----------lAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 68 LSKDTIVIL-----------------DDNNYIKGMRYELYC----------LARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp HTT-SEEEE------------------S---SHHHHHHHHH----------HHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred hccCeEEEE-----------------eCCchHHHHHHHHHH----------HHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 677888988 62 233444443332 34444466789999999999999997765
Q ss_pred CC-cccHHHHHHHHHHHHHHhhC-----CeEEEcC
Q psy16874 168 ER-YEQTDFQRKVAENYEKLKDN-----IWIDIDA 196 (227)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~-----~~~~Id~ 196 (227)
.. .-..+.+..+...|+..... +.++|+.
T Consensus 121 ~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~ 155 (270)
T PF08433_consen 121 EPERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDS 155 (270)
T ss_dssp -S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE-
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEec
Confidence 44 22477888888888887653 6788884
No 95
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.33 E-value=1.3e-11 Score=95.48 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE-EeeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ-FVNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSANR 78 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
+.+|+|.|++||||||+++.|++.++..++.+. ..++|..+...+ ..+...+..+..+... .+....
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 76 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWA----EVHGNY 76 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEE----EECCee
Confidence 468999999999999999999997765555543 355554322111 1222222222111000 000111
Q ss_pred hhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHH
Q psy16874 79 WER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEE 157 (227)
Q Consensus 79 ~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e 157 (227)
+.. ...+.+.+..|.++++ |.- .. -...+....+.+..++++.++.+
T Consensus 77 y~~~~~~i~~~~~~g~~vi~-----------------d~~------~~---------~~~~~~~~~~~~~~i~~~~~~~e 124 (180)
T TIGR03263 77 YGTPKSPVEEALAAGKDVLL-----------------EID------VQ---------GARQVKKKFPDAVSIFILPPSLE 124 (180)
T ss_pred eCCcHHHHHHHHHCCCeEEE-----------------ECC------HH---------HHHHHHHhCCCcEEEEEECCCHH
Confidence 111 2467777888888888 611 11 11112222234555666678889
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 158 ALQRRKGFGDERYEQTDFQRKVAENYEKLKD--NIWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 158 ~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
++.+|+..|++.. .....+++...-.+... ..-++|+++ +.++++.++.+.+.
T Consensus 125 ~~~~Rl~~r~~~~-~~~i~~rl~~~~~~~~~~~~~d~~i~n~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 125 ELERRLRKRGTDS-EEVIERRLAKAKKEIAHADEFDYVIVND-DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHHHHhccccCcEEEECC-CHHHHHHHHHHHHh
Confidence 9999998664432 22233333332222211 122444444 78999888887763
No 96
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.32 E-value=1.9e-11 Score=95.83 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=49.8
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHH--HHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE--KLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
..|.++++++|++++.+|+..|+ .....+...++..... ......-++|+++++++++..++.+.+..+++.
T Consensus 121 ~~D~vi~V~a~~e~r~~RL~~R~-g~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~~~ 194 (196)
T PRK14732 121 LCDATVTVDSDPEESILRTISRD-GMKKEDVLARIASQLPITEKLKRADYIVRNDGNREGLKEECKILYSTLLKK 194 (196)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHHcCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence 46999999999999999998763 3333444444433211 111114478899999999999999888776653
No 97
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.32 E-value=5.6e-11 Score=88.67 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=43.7
Q ss_pred CCCCCEEEEeecCHHHHHHhcCCC---CCCcccHHHHH---HHHH----HHHHHhhCCeEEEc-CCCCHHHHHHHHHHHH
Q psy16874 143 LPKPDAVLLFKLNEEALQRRKGFG---DERYEQTDFQR---KVAE----NYEKLKDNIWIDID-ADKDIDTLGLIVKDIV 211 (227)
Q Consensus 143 ~~~pd~vi~L~~~~e~~~~R~~~r---~~~~~~~~~~~---~~~~----~~~~~~~~~~~~Id-~~~s~~~v~~~I~~~i 211 (227)
...||.++.|.+||+++..|..+. ..++++.+.++ .... +|.-.....+.+|. .++.+++.+.+|...|
T Consensus 107 ~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l 186 (189)
T COG2019 107 ELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELL 186 (189)
T ss_pred hcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 348999999999999987776432 23344322222 2221 33333333555554 4589999999999887
Q ss_pred H
Q psy16874 212 I 212 (227)
Q Consensus 212 ~ 212 (227)
+
T Consensus 187 ~ 187 (189)
T COG2019 187 D 187 (189)
T ss_pred h
Confidence 6
No 98
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.32 E-value=1.9e-11 Score=91.74 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEc
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDID 195 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id 195 (227)
.+..+|+|++|++++.+|+..|.....+...+..+.+.++..... +.++||
T Consensus 97 ~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 149 (150)
T cd02021 97 PRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEPPGEDEEDVIVID 149 (150)
T ss_pred CCEEEEEEECCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCCCCCCeEEcc
Confidence 456799999999999999988754443455566666666655432 566665
No 99
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.29 E-value=2.9e-11 Score=92.54 Aligned_cols=31 Identities=39% Similarity=0.400 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS 39 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~ 39 (227)
++|+|+|++||||||+++.|++.++...++.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 4799999999999999999999887655543
No 100
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=99.29 E-value=6.3e-11 Score=94.41 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=97.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
+.|.+|+|.|.+||||+.+++.|.+.++.+|+.|..+..|......-..+ ...
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~~~p~l---------------------------wRf 81 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRERTQWYF---------------------------QRY 81 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHcChHH---------------------------HHH
Confidence 45889999999999999999999999999999998888775211111112 222
Q ss_pred HHHHH-cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChh-------hhhccc---CCCCCCCEEEEeec
Q psy16874 86 TKLIE-QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDIS-------WCFQPE---KGLPKPDAVLLFKL 154 (227)
Q Consensus 86 ~~~~~-~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~pd~vi~L~~ 154 (227)
...++ .|.+.|. ||+||............+.. -+..++ ......-+.|||++
T Consensus 82 w~~lP~~G~i~IF-----------------~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhI 144 (230)
T TIGR03707 82 VQHLPAAGEIVLF-----------------DRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSV 144 (230)
T ss_pred HHhCCCCCeEEEE-----------------eCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Confidence 22333 6788888 99999876644433111111 111111 12335568999999
Q ss_pred CHHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhhC------CeEEEcCCCC
Q psy16874 155 NEEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKDN------IWIDIDADKD 199 (227)
Q Consensus 155 ~~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~~s 199 (227)
|.++..+|+..+.+. +. ..+.......+|++.... ||++|+++..
T Consensus 145 sk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk 206 (230)
T TIGR03707 145 SREEQLRRFKARIDDPLKQWKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDK 206 (230)
T ss_pred CHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 999999999754322 11 133344555566655432 9999999843
No 101
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1.9e-11 Score=90.60 Aligned_cols=166 Identities=13% Similarity=0.135 Sum_probs=98.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCC-CCeEE--eeCCC-CCCCchHHH--HHHHhhcCCCCHHHHHHHHHhhhhh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNN-IPSQF--VNFPD-RTISTGHII--DEYLRKKIELPDQAAHLLFSANRWE 80 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~-~~~~~--~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227)
.+++|++.||+||||.|+...+...+.... +.+.. +..|. .+.+.-+.+ .+|... ...-.|+.++..
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~-------a~~g~FAlsWqA 76 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTR-------AGQGAFALSWQA 76 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHH-------hhcCceeEEehh
Confidence 488999999999999999999999887542 33322 22231 111110100 111111 000112222211
Q ss_pred h------hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec
Q psy16874 81 R------EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL 154 (227)
Q Consensus 81 ~------~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~ 154 (227)
+ -..|..++..|..|++ . +.+ ..+-+....++ --+++.+.+
T Consensus 77 hGL~Ygip~eId~wl~~G~vvl~-----------------N----------gSR-----a~Lp~arrry~-~Llvv~ita 123 (192)
T COG3709 77 HGLSYGIPAEIDLWLAAGDVVLV-----------------N----------GSR-----AVLPQARRRYP-QLLVVCITA 123 (192)
T ss_pred cCccccCchhHHHHHhCCCEEEE-----------------e----------ccH-----hhhHHHHHhhh-cceeEEEec
Confidence 1 1478889999999888 2 111 22222222222 236999999
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 155 NEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 155 ~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
+|+++.+|+..|+... ..+...++...-...... ++++||+++.++...+.....+.+
T Consensus 124 ~p~VLaqRL~~RGREs-~eeI~aRL~R~a~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~ 182 (192)
T COG3709 124 SPEVLAQRLAERGRES-REEILARLARAARYTAGPGDVTTIDNSGELEDAGERLLALLHQ 182 (192)
T ss_pred CHHHHHHHHHHhccCC-HHHHHHHHHhhcccccCCCCeEEEcCCCcHHHHHHHHHHHHHh
Confidence 9999999998754332 245556665543333223 899999999999988887777763
No 102
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=99.29 E-value=5.9e-11 Score=104.03 Aligned_cols=167 Identities=12% Similarity=0.087 Sum_probs=108.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
..+.+|+|+|.+||||+++++.|.+.++.+|+.|..+..|......-..+ ...
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~~~fl---------------------------wRf 90 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERERPPM---------------------------WRF 90 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhcCcHH---------------------------HHH
Confidence 56889999999999999999999999999999998888775211111111 223
Q ss_pred HHHHH-cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChh-------hhhccc---CCCCCCCEEEEeec
Q psy16874 86 TKLIE-QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDIS-------WCFQPE---KGLPKPDAVLLFKL 154 (227)
Q Consensus 86 ~~~~~-~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~pd~vi~L~~ 154 (227)
...++ .|.++|. ||+||............+.. -+..++ ......-+.+||++
T Consensus 91 w~~lP~~G~I~IF-----------------dRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhI 153 (493)
T TIGR03708 91 WRRLPPKGKIGIF-----------------FGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHL 153 (493)
T ss_pred HHhCCCCCeEEEE-----------------cCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Confidence 33333 6788888 99999876655443111111 111111 12334557999999
Q ss_pred CHHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhhC------CeEEEcCCCCH---HHHHHHHHHHHHHH
Q psy16874 155 NEEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKDN------IWIDIDADKDI---DTLGLIVKDIVIDT 214 (227)
Q Consensus 155 ~~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~~s~---~~v~~~I~~~i~~~ 214 (227)
|.++..+|+..|.+. +. ..+.......+|++.... ||++|+++... -.|+..|.+.|...
T Consensus 154 sk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~ 233 (493)
T TIGR03708 154 SKKQQKERLKKLEKDPETRWRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRAR 233 (493)
T ss_pred CHHHHHHHHHHHhcCCccccCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999765322 11 133344445556555432 99999998432 34677777777776
Q ss_pred hh
Q psy16874 215 IK 216 (227)
Q Consensus 215 l~ 216 (227)
+.
T Consensus 234 l~ 235 (493)
T TIGR03708 234 LA 235 (493)
T ss_pred Hh
Confidence 64
No 103
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.29 E-value=3.8e-11 Score=94.09 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=50.4
Q ss_pred CCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHH---HHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874 146 PDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA---ENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS 218 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~ 218 (227)
.|.+|++.||+++..+|+.+|+ .....+...++. ...+.+.. .-.++|++.+++...+++.+.+...+...
T Consensus 124 ~d~Vi~V~a~~e~r~eRl~~R~-~~~~e~~~~~~~~Q~~~~ek~~~-ad~vi~n~~~i~~l~~~i~~~~~~~~~~~ 197 (201)
T COG0237 124 FDKVIVVYAPPEIRLERLMKRD-GLDEEDAEARLASQRDLEEKLAL-ADVVIDNDGSIENLLEQIEKLLKELLGLV 197 (201)
T ss_pred CCEEEEEECCHHHHHHHHHhcC-CCCHHHHHHHHHhcCCHHHHHhh-cCChhhcCCCHHHHHHHHHHHHHHHHhhh
Confidence 7899999999999999998876 332222222222 23333222 34799999999999999999998777643
No 104
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.27 E-value=9.7e-11 Score=91.06 Aligned_cols=167 Identities=19% Similarity=0.172 Sum_probs=87.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSAN 77 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (227)
+++|+|.||+||||+|+++.|.+..+.. +..+-+ ++.+..+...| +.+.....++..+..... ..+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~----~g~ 77 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEY----SGN 77 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEE----cCc
Confidence 5789999999999999999999986422 222222 44333222111 333444443321111000 001
Q ss_pred hhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee-cC
Q psy16874 78 RWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK-LN 155 (227)
Q Consensus 78 ~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~-~~ 155 (227)
.+.. ...+...+..+..+++ | ..+ ..+.++....+.| ++||+. .+
T Consensus 78 ~YGt~~~~i~~~~~~~~~~il-----------------d-----~~~----------~~~~~l~~~~~~~-~vIfi~~~s 124 (184)
T smart00072 78 YYGTSKETIRQVAEQGKHCLL-----------------D-----IDP----------QGVKQLRKAQLYP-IVIFIAPPS 124 (184)
T ss_pred CcccCHHHHHHHHHcCCeEEE-----------------E-----ECH----------HHHHHHHHhCCCc-EEEEEeCcC
Confidence 1111 1346666677877777 6 211 2222222223344 688887 66
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh-C-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 156 EEALQRRKGFGDERYEQTDFQRKVAENYEKLKD-N-IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 156 ~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.+++.+|+..|++... ....+++..+-..... . --.+|+++ +.++++.++.+.|.+
T Consensus 125 ~~~l~~rl~~R~~~~~-~~i~~rl~~a~~~~~~~~~fd~~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 125 SEELERRLRGRGTETA-ERIQKRLAAAQKEAQEYHLFDYVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHHHh
Confidence 7789999987654422 2233333332221111 1 22455554 788998888888864
No 105
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=99.26 E-value=1.2e-10 Score=94.47 Aligned_cols=163 Identities=14% Similarity=0.163 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
..|.+|+|.|.+||||+.+++.|.+.++.+|+.|..+..|......-..+ ...
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~~~p~l---------------------------WRf 106 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEELDHDFL---------------------------WRI 106 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHcCchH---------------------------HHH
Confidence 34889999999999999999999999999999999888775211111111 122
Q ss_pred HHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhh-------hhccc---CCCCCCCEEEEeec
Q psy16874 86 TKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISW-------CFQPE---KGLPKPDAVLLFKL 154 (227)
Q Consensus 86 ~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~pd~vi~L~~ 154 (227)
...+ ..|.+.|. ||+||............+... +..++ ......-+.|||++
T Consensus 107 w~~lP~~G~i~IF-----------------~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhI 169 (264)
T TIGR03709 107 HKALPERGEIGIF-----------------NRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHI 169 (264)
T ss_pred HHhCCCCCeEEEE-----------------cCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeC
Confidence 2233 36788888 999998766554431121111 11111 12334557999999
Q ss_pred CHHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhhC------CeEEEcCCCCH---HHHHHHHHHHHH
Q psy16874 155 NEEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKDN------IWIDIDADKDI---DTLGLIVKDIVI 212 (227)
Q Consensus 155 ~~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~~s~---~~v~~~I~~~i~ 212 (227)
|.++..+|+..+.+. +. ..+.......+|++.... +|++|+++... -.|+..|.+.|.
T Consensus 170 sk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~ 247 (264)
T TIGR03709 170 SKEEQKKRFLARLDDPTKNWKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALE 247 (264)
T ss_pred CHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999754211 11 123344555566555432 99999998432 234445555554
No 106
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.25 E-value=1.3e-10 Score=89.62 Aligned_cols=38 Identities=32% Similarity=0.542 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++|.+|+|+|++||||||+++.|+..+...+.++..+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 46889999999999999999999999987776665554
No 107
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.25 E-value=7.7e-11 Score=93.40 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++.+|+|.|++||||||+++.|.+.++
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999999999984
No 108
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.25 E-value=4.2e-11 Score=93.38 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=42.0
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHH---HHHhhCCeEEEcCCCCHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY---EKLKDNIWIDIDADKDIDTLGLIVK 208 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Id~~~s~~~v~~~I~ 208 (227)
..|.++++++|++++.+|+..|+ .....+...++.... +... ...++|++++++++...++.
T Consensus 123 ~~D~vv~V~~~~~~~~~Rl~~R~-~~s~~~~~~r~~~q~~~~~~~~-~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 123 LCDRVIVVDVSPQLQLERLMQRD-NLTEEEVQKRLASQMDIEERLA-RADDVIDNSATLADLVKQLE 187 (188)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCCHHHHHH-hCCEEEECCCCHHHHHHHHh
Confidence 46899999999999999998764 333334444443321 1111 14578899999999887764
No 109
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.25 E-value=5.5e-12 Score=93.72 Aligned_cols=115 Identities=21% Similarity=0.174 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cC---CCCHHHHHHHHHhhhhhhhhHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KI---ELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i 85 (227)
+|+++|+|||||||+++.|++.++...++. +.+..-+.. .. .......... .......+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~-------------D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 63 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQ-------------DEIRRRLAGEDPPSPSDYIEAEERA----YQILNAAI 63 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEH-------------HHHHHHHCCSSSGCCCCCHHHHHHH----HHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeH-------------HHHHHHHcccccccchhHHHHHHHH----HHHHHHHH
Confidence 689999999999999999999877322221 122222211 11 1111111100 01112355
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
...+..|..+|+ |...... .. ...+.++......+..+|+|++|++++.+|+..
T Consensus 64 ~~~l~~g~~~vv-----------------d~~~~~~----~~-----r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~ 117 (143)
T PF13671_consen 64 RKALRNGNSVVV-----------------DNTNLSR----EE-----RARLRELARKHGYPVRVVYLDAPEETLRERLAQ 117 (143)
T ss_dssp HHHHHTT-EEEE-----------------ESS--SH----HH-----HHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHT
T ss_pred HHHHHcCCCcee-----------------ccCcCCH----HH-----HHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHh
Confidence 666778888887 6322211 00 022333444444567899999999999999976
Q ss_pred CC
Q psy16874 166 GD 167 (227)
Q Consensus 166 r~ 167 (227)
|.
T Consensus 118 R~ 119 (143)
T PF13671_consen 118 RN 119 (143)
T ss_dssp TH
T ss_pred cC
Confidence 63
No 110
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.23 E-value=5.7e-12 Score=95.60 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHHHHHHcCCEE
Q psy16874 17 DRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLTKLIEQGITL 95 (227)
Q Consensus 17 ~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 95 (227)
|||||||+++.|++.|++..++.+..-+.. .|..+.+++.. |....... ..+.+...+.....|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~----~g~si~~i~~~~G~~~fr~~-----------E~~~l~~l~~~~~~V 65 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER----TGMSISEIFAEEGEEAFREL-----------ESEALRELLKENNCV 65 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH----HTSHHHHHHHHHHHHHHHHH-----------HHHHHHHHHCSSSEE
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHH----hCCcHHHHHHcCChHHHHHH-----------HHHHHHHHhccCcEE
Confidence 799999999999999988665544321111 12222233322 11001111 113455555554556
Q ss_pred EEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCC--CcccH
Q psy16874 96 EIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE--RYEQT 173 (227)
Q Consensus 96 i~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~--~~~~~ 173 (227)
|+ +++|+++.. -. ...+. ....+|||++|++++.+|+..+.. .+...
T Consensus 66 Ia----------~GGG~~~~~-----~~---------~~~L~-------~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~ 114 (158)
T PF01202_consen 66 IA----------CGGGIVLKE-----EN---------RELLK-------ENGLVIYLDADPEELAERLRARDNRPLLKGK 114 (158)
T ss_dssp EE----------E-TTGGGSH-----HH---------HHHHH-------HHSEEEEEE--HHHHHHHHHHHCTSGGTCSH
T ss_pred Ee----------CCCCCcCcH-----HH---------HHHHH-------hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCC
Confidence 65 566666661 11 12221 234799999999999999964332 23321
Q ss_pred ----HHHH---HHHHHHHHHhhCCeEEEcCCCCH-HHHHHHHHHHHH
Q psy16874 174 ----DFQR---KVAENYEKLKDNIWIDIDADKDI-DTLGLIVKDIVI 212 (227)
Q Consensus 174 ----~~~~---~~~~~~~~~~~~~~~~Id~~~s~-~~v~~~I~~~i~ 212 (227)
.... .-...|+.. ..++||++..+ ++++++|.+.|.
T Consensus 115 ~~~~~~~~~~~~R~~~Y~~~---a~~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 115 MEHEEILELLFEREPLYEQA---ADIVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---SSEEEETSSCHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHhc---CeEEEeCCCCCHHHHHHHHHHHhC
Confidence 1122 223355555 45889988777 999999988763
No 111
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=99.22 E-value=3e-12 Score=102.09 Aligned_cols=167 Identities=17% Similarity=0.217 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
.|.+|+|+|.+||||+.+++.|.+.++.+|+.|..+..|.. .+.-+.+ +....
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~----eE~~~p~-----------------------lwRfw 82 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTD----EELRRPF-----------------------LWRFW 82 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--H----HHHTS-T-----------------------THHHH
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCCh----hHcCCCc-----------------------HHHHH
Confidence 46899999999999999999999999999999988887641 1110000 01222
Q ss_pred HHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhh-------hccc---CCCCCCCEEEEeecC
Q psy16874 87 KLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWC-------FQPE---KGLPKPDAVLLFKLN 155 (227)
Q Consensus 87 ~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~pd~vi~L~~~ 155 (227)
..+ ..|.++|. ||+||+...........+...+ ..++ ......-+.|||++|
T Consensus 83 ~~lP~~G~I~if-----------------~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIs 145 (228)
T PF03976_consen 83 RALPARGQIGIF-----------------DRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHIS 145 (228)
T ss_dssp TTS--TT-EEEE-----------------ES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--
T ss_pred HhCCCCCEEEEE-----------------ecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeC
Confidence 222 36888888 9999987665544312221111 1111 122244579999999
Q ss_pred HHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhh----C--CeEEEcCCCCH---HHHHHHHHHHHHHHh
Q psy16874 156 EEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKD----N--IWIDIDADKDI---DTLGLIVKDIVIDTI 215 (227)
Q Consensus 156 ~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~----~--~~~~Id~~~s~---~~v~~~I~~~i~~~l 215 (227)
.++..+|+.++.+. +. ..+.......+|+.... . ||++|+++... -.|+..|.+.|+..+
T Consensus 146 k~eQ~kRl~~~~~~p~~~wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~l~~~le~~~ 225 (228)
T PF03976_consen 146 KKEQKKRLKEREEDPLKRWKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKRYARLAVARTLLDALEKAL 225 (228)
T ss_dssp HHHHHHHHHHHHHSCCCGGG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCccccccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHHHHHHHHHHHHHHHhHhhc
Confidence 99999999653211 11 12223344445555543 2 99999998332 235566666666554
Q ss_pred hh
Q psy16874 216 KK 217 (227)
Q Consensus 216 ~~ 217 (227)
++
T Consensus 226 ~~ 227 (228)
T PF03976_consen 226 KK 227 (228)
T ss_dssp HH
T ss_pred cC
Confidence 43
No 112
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.22 E-value=1.8e-10 Score=97.04 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=47.9
Q ss_pred ccCCCCCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--C----CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 139 PEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD--N----IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 139 ~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~----~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
+.+....+..+||+++|++++.+|...|+..+. .+.++.+...|+.... + +.++|+.....++....+.+++.
T Consensus 148 LAr~~~~~~~~V~ld~ple~~l~RN~~R~~~v~-devie~m~~r~E~P~~~~nrWd~pl~~v~~~~~~~~~~~~~~~~~~ 226 (340)
T TIGR03575 148 LARKYSLGFCQLFLDCPVESCLLRNKQRPVPLP-DETIQLMGRKIEKPNPEKNAWEHNSLVIQSSACISEDSLEVTDLLN 226 (340)
T ss_pred HHHHhCCCEEEEEEeCCHHHHHHHHhcCCCCCC-HHHHHHHHHHhcCCCCCCCCCCCCeEEEecCccccccchhHHHHHH
Confidence 333333556899999999999999988754433 5566666667766553 2 78888875333222234444444
Q ss_pred HHh
Q psy16874 213 DTI 215 (227)
Q Consensus 213 ~~l 215 (227)
..+
T Consensus 227 ~~~ 229 (340)
T TIGR03575 227 TAL 229 (340)
T ss_pred HHH
Confidence 444
No 113
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.21 E-value=8.2e-11 Score=108.93 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=54.5
Q ss_pred CCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH-HH---HHHh---h-CCeEEEcCC-CCH
Q psy16874 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE-NY---EKLK---D-NIWIDIDAD-KDI 200 (227)
Q Consensus 130 ~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~-~~---~~~~---~-~~~~~Id~~-~s~ 200 (227)
|.+..|+ -.|..++.|||++++++..+|...+.....-.+.++.+.. -+ +... . ...++||++ .++
T Consensus 144 GRdigtv-----v~p~a~~K~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~ 218 (712)
T PRK09518 144 GRDITTV-----VAPDAEVRILLTAREEVRQARRSGQDRSETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDF 218 (712)
T ss_pred cCccceE-----EecCCCeEEEEECCHHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCH
Confidence 6666666 3466789999999999998887543221111222222211 11 1111 1 167899977 999
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q psy16874 201 DTLGLIVKDIVIDTIKKSQ 219 (227)
Q Consensus 201 ~~v~~~I~~~i~~~l~~~~ 219 (227)
++|.+.|.+.+...+....
T Consensus 219 ~~v~~~i~~~i~~~~~~~~ 237 (712)
T PRK09518 219 DETLDLLIGLVEDAIEEQE 237 (712)
T ss_pred HHHHHHHHHHHHhhhhhhh
Confidence 9999999999987776543
No 114
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.21 E-value=2.3e-10 Score=89.99 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=33.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++|.+|+|+|++||||||+++.|+..+...+..+..+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 367889999999999999999999999977776665554
No 115
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.20 E-value=2.8e-10 Score=104.15 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=91.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++|.+|+++|+|||||||+++.|++.|...+..+..++. +.++..+..+....+......+.. .....
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~--------D~~r~~l~~~~~~~~~~r~~~~~~----l~~~a 525 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG--------DNVRHGLNRDLGFSDADRVENIRR----VAEVA 525 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC--------hhhhhccCCCCCCCHHHHHHHHHH----HHHHH
Confidence 458999999999999999999999999876766655541 222222222212222211111111 01223
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
......|..|++ |- .+++...+ .+..++... .+-.+|||++|++++.+|..
T Consensus 526 ~~~~~~G~~Viv-----------------da----~~~~~~~R-----~~~r~l~~~--~~~~~v~L~~~~e~~~~R~~- 576 (632)
T PRK05506 526 RLMADAGLIVLV-----------------SF----ISPFREER-----ELARALHGE--GEFVEVFVDTPLEVCEARDP- 576 (632)
T ss_pred HHHHhCCCEEEE-----------------EC----CCCCHHHH-----HHHHHhccc--CCeEEEEECCCHHHHHhhCC-
Confidence 334467888888 51 11111111 222222221 24479999999999999953
Q ss_pred CCCCccc--HHH---HHHHHHHHHHHhhCCeEEEcC-CCCHHHHHHHHHHHHHH
Q psy16874 166 GDERYEQ--TDF---QRKVAENYEKLKDNIWIDIDA-DKDIDTLGLIVKDIVID 213 (227)
Q Consensus 166 r~~~~~~--~~~---~~~~~~~~~~~~~~~~~~Id~-~~s~~~v~~~I~~~i~~ 213 (227)
.+.+.. .+. +..+...|+.+ ....++||+ ..+++++.++|.+.|..
T Consensus 577 -r~L~~~~~~~~l~~l~~~r~~y~~P-~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 577 -KGLYAKARAGEIKNFTGIDSPYEAP-ENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred -cchhhhccccccccccccccCCCCC-CCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 223321 111 11222234321 114578887 57999999999988854
No 116
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.19 E-value=3.6e-09 Score=84.78 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
.+++|+|.|++||||||+++.|++.++..+++.+.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 46899999999999999999999999988877665
No 117
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.19 E-value=4.1e-10 Score=101.34 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=90.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
++|.+|+|+|++||||||+++.|++.++. .+.++..++. +.+++-+..+..+...-....+. + ....
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~--------D~vr~~l~ge~~f~~~er~~~~~--~--l~~~ 457 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG--------DVVRKHLSSELGFSKEDRDLNIL--R--IGFV 457 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC--------cHHHHhccCCCCCCHHHHHHHHH--H--HHHH
Confidence 35779999999999999999999999987 5665555541 12222222111122211111010 0 0012
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
....+..|..||+ | ..+++...+ . .+.. +.... ..-++|||++|++++.+|..
T Consensus 458 a~~v~~~Gg~vI~-----------------~----~~~p~~~~R-~---~nr~-llk~~-g~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 458 ASEITKNGGIAIC-----------------A----PIAPYRATR-R---EVRE-MIEAY-GGFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHHHHhCCCEEEE-----------------E----eCCchHHHH-H---HHHH-HHhhc-CCEEEEEEcCCHHHHHHhcc
Confidence 2334567888888 5 122332222 0 1111 11111 12258999999999999985
Q ss_pred CCCCCccc--HHHHHHH---HHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 165 FGDERYEQ--TDFQRKV---AENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 165 ~r~~~~~~--~~~~~~~---~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
+ +.+.+ .+.++.+ +..|..+. ...++||++ .+++++.++|.+.|..
T Consensus 511 r--~Ll~~~~~~~i~~l~~~R~~yy~p~-~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 511 K--GLYAKAREGKIKGFTGISDPYEPPA-NPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred c--cccccchhchhhccccccccccCCC-CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3 23321 1122222 22222211 134788877 6899999998888764
No 118
>KOG4235|consensus
Probab=99.18 E-value=3.2e-11 Score=91.96 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=45.2
Q ss_pred CCCCCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhh--------C-CeEEEcCCCCH
Q psy16874 142 GLPKPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLKD--------N-IWIDIDADKDI 200 (227)
Q Consensus 142 ~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~--------~-~~~~Id~~~s~ 200 (227)
....+|.+|||+++|++|.+|+..|.+.-+ ..+|++.++...+.|.- + +++++|++-..
T Consensus 150 ~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n~ 220 (244)
T KOG4235|consen 150 MDVSLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHNM 220 (244)
T ss_pred cccccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccch
Confidence 335799999999999999999976643333 48899999887777641 1 89999977443
No 119
>KOG3220|consensus
Probab=99.17 E-value=4.6e-10 Score=86.15 Aligned_cols=167 Identities=17% Similarity=0.127 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-ee---CCCCCCCchHHHHHHHhh-----cCCCCHHHHHHHHHhh--
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VN---FPDRTISTGHIIDEYLRK-----KIELPDQAAHLLFSAN-- 77 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-- 77 (227)
.++.++|..||||||+++.+. .++...++++. .+ +| +.+....+.+.+.. ++.+.....-.+++.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~P--G~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEP--GTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcC--CChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 478999999999999997776 34333333332 12 24 44444555555443 2233333222222211
Q ss_pred -------------hhhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC
Q psy16874 78 -------------RWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP 144 (227)
Q Consensus 78 -------------~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (227)
+.+..+.+...+-+|..+++ +| . ..+.+. ....
T Consensus 79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~iv----------------lD------i-----------PLLFE~-~~~~ 124 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIV----------------LD------I-----------PLLFEA-KLLK 124 (225)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEE----------------Ee------c-----------hHHHHH-hHHh
Confidence 12222344445556654443 24 1 112111 0111
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH--hhCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL--KDNIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
....+|.+.||.++..+|+..|. .....+..+++...+.-. .+...++||+++++++..++|..++..
T Consensus 125 ~~~~tvvV~cd~~~Ql~Rl~~Rd-~lse~dAe~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~ 194 (225)
T KOG3220|consen 125 ICHKTVVVTCDEELQLERLVERD-ELSEEDAENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLAL 194 (225)
T ss_pred heeeEEEEEECcHHHHHHHHHhc-cccHHHHHHHHHhcCCHHHHHHhhheeecCCCChHHHHHHHHHHHHH
Confidence 33468889999999999998765 444444555555433111 111568999999999999999887753
No 120
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.14 E-value=3.2e-10 Score=90.31 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
+++|.|.|++||||||+++.|+++++..+++.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~ 35 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA 35 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence 3689999999999999999999999877666553
No 121
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.13 E-value=5.6e-10 Score=104.11 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=46.1
Q ss_pred CCCCCCEEEEeecCHHHHHHhcCCC-CCCcccHHHHHHHH-HHHHHHhh--------CCeEEEcCC-CCHHHHHHHHHHH
Q psy16874 142 GLPKPDAVLLFKLNEEALQRRKGFG-DERYEQTDFQRKVA-ENYEKLKD--------NIWIDIDAD-KDIDTLGLIVKDI 210 (227)
Q Consensus 142 ~~~~pd~vi~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~Id~~-~s~~~v~~~I~~~ 210 (227)
-+|..++.|||++++++..+|.... .....-.+.+..+. +-+.+..+ ...++||++ .+++++.+.|.+.
T Consensus 203 VfPdA~~KifL~As~e~RA~RR~~e~~~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~ieevv~~i~~~ 282 (863)
T PRK12269 203 VFVDADLKCYLDASIEARVARRWAQGTSRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTIEEVCERIARE 282 (863)
T ss_pred ECCCCCEEEEEECCHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCHHHHHHHHHHH
Confidence 3567789999999999998876421 11111123333331 12222221 167899977 9999999999988
Q ss_pred HHHH
Q psy16874 211 VIDT 214 (227)
Q Consensus 211 i~~~ 214 (227)
+.+.
T Consensus 283 ~~~~ 286 (863)
T PRK12269 283 AHRR 286 (863)
T ss_pred HHhc
Confidence 8643
No 122
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.13 E-value=1.3e-09 Score=100.09 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=49.5
Q ss_pred CCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC----CCC--CcccHHHHHHHHH-HHHHHhh--------CCeEEE
Q psy16874 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF----GDE--RYEQTDFQRKVAE-NYEKLKD--------NIWIDI 194 (227)
Q Consensus 130 ~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~----r~~--~~~~~~~~~~~~~-~~~~~~~--------~~~~~I 194 (227)
|.+..++ -+|..++.|||++++++..+|... .+. .++ +.++.+.+ .+.+..+ ...++|
T Consensus 563 GRdigtv-----v~p~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~--~~~~~~~~Rd~~d~~R~~~pl~~~~da~~i 635 (661)
T PRK11860 563 GRDMGTV-----IFPDAALKVFLTASAEARAERRYKQLISKGISANIA--DLLADLEARDARDTQRSVAPLKPAQDALLL 635 (661)
T ss_pred CCCCccE-----ECCCCCeEEEEECChhHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhHHhhcCCCCCCccCCCEEEE
Confidence 6666666 346678999999999999888743 111 222 22222211 1222211 167899
Q ss_pred cCC-CCHHHHHHHHHHHHHH
Q psy16874 195 DAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 195 d~~-~s~~~v~~~I~~~i~~ 213 (227)
|++ .+++++.+.|.+.+.+
T Consensus 636 dts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 636 DNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred ECCCCCHHHHHHHHHHHHHh
Confidence 987 7999999999888864
No 123
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.12 E-value=1.1e-09 Score=94.69 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH--HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE--NYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
..|.+||+++|++++.+|+..+++ ....+...++.. .++.......++|+++++++++..++.+.+...+..
T Consensus 123 ~~D~iI~V~ap~e~ri~Rl~~rRg-~s~~~a~~ri~~Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~ 196 (395)
T PRK03333 123 LFHLVVVVDADVEVRVRRLVEQRG-MAEADARARIAAQASDEQRRAVADVWLDNSGTPDELVEAVRALWADRLLP 196 (395)
T ss_pred hCCEEEEEECCHHHHHHHHHhcCC-CCHHHHHHHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 458999999999999999976432 222222233322 122222224588999999999999988888766654
No 124
>PRK08118 topology modulation protein; Reviewed
Probab=99.11 E-value=3.7e-10 Score=86.43 Aligned_cols=32 Identities=31% Similarity=0.283 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
-|+|+|++||||||+++.|++.++..+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 49999999999999999999999877666554
No 125
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.11 E-value=2.4e-10 Score=88.43 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH--hhCCeEEEcCCCCHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL--KDNIWIDIDADKDID 201 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~Id~~~s~~ 201 (227)
..|.++++++|+++..+|+..|. .....+...++....... ....-++|+++++.+
T Consensus 121 ~~D~vv~V~a~~~~ri~Rl~~Rd-~~s~~~~~~r~~~Q~~~~~~~~~aD~vI~N~~~~~ 178 (179)
T cd02022 121 LVDRVIVVDAPPEIQIERLMKRD-GLSEEEAEARIASQMPLEEKRARADFVIDNSGSLE 178 (179)
T ss_pred hCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCCC
Confidence 56899999999999999997653 333344444444322111 111347788776653
No 126
>PRK12338 hypothetical protein; Provisional
Probab=99.11 E-value=1.9e-09 Score=89.74 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=91.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCC-CeEEeeCCCCC---CCchHHH-------HHHHhhcCCCCH--HHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI-PSQFVNFPDRT---ISTGHII-------DEYLRKKIELPD--QAAHL 72 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~-~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~--~~~~~ 72 (227)
.+|.+|+|.|+|||||||+|..|++.++..++ +.+.+++..++ .++...+ ...+..+....+ .....
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 56899999999999999999999999987654 33334431111 1110000 011111111111 11111
Q ss_pred HH---Hhhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCE
Q psy16874 73 LF---SANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDA 148 (227)
Q Consensus 73 ~~---~~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~ 148 (227)
.| .......+ ..+..++..|..+|+ +..++. ..++.........+-.
T Consensus 82 gf~~q~~~V~~~i~~vi~r~~~~g~svIi-----------------EGvhl~------------P~~i~~~~~~~~~~v~ 132 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERAVTDSDDIVI-----------------EGVHLV------------PGLIDIEQFEENASIH 132 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEE-----------------Eecccc------------HHHHhhhhhcccCceE
Confidence 11 11111122 244445566767777 522211 1222211111111224
Q ss_pred EEEeecCHHHHHHhcCCCC------CCc-ccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 149 VLLFKLNEEALQRRKGFGD------ERY-EQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 149 vi~L~~~~e~~~~R~~~r~------~~~-~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
.++|..+.++..+|...|. ..+ ..-+..+.+++.+...+.. .+.+|+ +.+.+++.+.+.+.|.+..+
T Consensus 133 ~~vl~~dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~~A~e~~VpvI~-N~did~Tv~~ile~I~e~s~ 207 (319)
T PRK12338 133 FFILSADEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHLVEQAREHNVPVIK-NDDIDCTVKKMLSYIREVCV 207 (319)
T ss_pred EEEEECCHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHHHHhHhhCCCceeC-CCcHHHHHHHHHHHHHhheE
Confidence 5666688888888886532 222 1233333444444444333 555564 45889999999998876654
No 127
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.10 E-value=2.5e-09 Score=80.29 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|+|+|++||||||+++.|++.+...+.++..+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4789999999999999999999987777665543
No 128
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.09 E-value=2.1e-09 Score=80.00 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
+|+|.|++||||||+++.|++.++..+++.+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 4899999999999999999999876555544
No 129
>PHA03136 thymidine kinase; Provisional
Probab=99.09 E-value=3.3e-09 Score=89.51 Aligned_cols=174 Identities=15% Similarity=0.087 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC--CCc--hHHHHHHHhh-----cCCCCHH-----HH--HH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT--IST--GHIIDEYLRK-----KIELPDQ-----AA--HL 72 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~-----~~~~~~~-----~~--~~ 72 (227)
..|+|+|+.|+||||+++.|.+. ...+-++.++.||-.. .-. .+.+..++.. .++++.. .. .+
T Consensus 37 ~rvyieG~~gvGKTT~~~~l~~~-~~~~~~vl~v~EPm~yW~~v~~~~d~i~~Iy~~q~r~~~G~~s~~~a~~~~~~~~Q 115 (378)
T PHA03136 37 VLLYLDGPFGTGKTTTAKLLMEM-PDTLAARLYLAEPMAAWRNHFGGADMIKEINEIQELKARGDIACRDAKAIAAAELQ 115 (378)
T ss_pred EEEEEECCCcCCHHHHHHHHHhc-cccCCCeeeecCchHHHHhhcCcchHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence 47999999999999999999884 2233345566776311 111 1344444432 2233321 11 12
Q ss_pred HHHhhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhh---hhccC-CCChhhhhc---ccCCCC
Q psy16874 73 LFSANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF---SAAKE-GMDISWCFQ---PEKGLP 144 (227)
Q Consensus 73 ~~~~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~---~~~~~-~~~~~~~~~---~~~~~~ 144 (227)
.-++..+... ..+.+.+.....+.. ........-+++||..++...- ..... .+...-+.. +....+
T Consensus 116 ~~fa~P~~~~~~~~~~~~g~~~~~~~-----~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~~~~~p 190 (378)
T PHA03136 116 LQFAAPLRIFHHVASNLFGSERCYSA-----AARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISGIPDEP 190 (378)
T ss_pred HHhccHHHHHHHHHHHhhccccccCC-----CCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhhCcCCC
Confidence 2222333322 233334332211000 0001122335779997763332 11111 122222222 234567
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHHHHHhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENYEKLKD 188 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~ 188 (227)
.||++|||+++++++.+|+.+|++..|. .+|++.++..|+.+..
T Consensus 191 ~pD~IIyL~l~~e~~~~RI~kRgR~~E~I~~~YL~~L~~~Y~~~~n 236 (378)
T PHA03136 191 HGGNIVIMDLDECEHAERIIARGRPGEAIDVRFLCALHNIYICFMN 236 (378)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999887766653 7999999999888864
No 130
>PRK06696 uridine kinase; Validated
Probab=99.08 E-value=7.8e-10 Score=88.58 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++.+|+|.|++||||||+++.|++.|+..|.++..+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 46789999999999999999999999987776665533
No 131
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.07 E-value=1.2e-09 Score=83.62 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEeeC--CCCCCCchHHHHHHHhhcCCC------C--HHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVNF--PDRTISTGHIIDEYLRKKIEL------P--DQAAHLLFS 75 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~ 75 (227)
+.+|++.|++.|||||+++.|.+.+... +++++.+.. |. .....+..+ + ......++.
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~ 70 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPP----------GRYRPGDGLEPAGDRPDGGPLFRRLYA 70 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-G----------GGGTSTTSEEEETTSEEE-HHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCc----------ccccCCccccccccCCchhHHHHHHHH
Confidence 4689999999999999999999987642 222222211 00 000111110 0 011111111
Q ss_pred hhhhhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecC
Q psy16874 76 ANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN 155 (227)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~ 155 (227)
.....+......|..||+ |-.+....... ..+.++. ...|-+.|-+.||
T Consensus 71 ----~~~~~iaa~a~aG~~VIv-----------------D~v~~~~~~l~--------d~l~~~L--~~~~vl~VgV~Cp 119 (174)
T PF07931_consen 71 ----AMHAAIAAMARAGNNVIV-----------------DDVFLGPRWLQ--------DCLRRLL--AGLPVLFVGVRCP 119 (174)
T ss_dssp ----HHHHHHHHHHHTT-EEEE-----------------EE--TTTHHHH--------HHHHHHH--TTS-EEEEEEE--
T ss_pred ----HHHHHHHHHHhCCCCEEE-----------------ecCccCcHHHH--------HHHHHHh--CCCceEEEEEECC
Confidence 112455666778999999 73322211100 1111111 1356689999999
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 156 EEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 156 ~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
++++.+|-..|+++..... ...++..... .-+.||++ .+++++++.|.+.++
T Consensus 120 leil~~RE~~RgDR~~G~a-----~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 120 LEILERRERARGDRPIGLA-----AWQAEHVHEGGRYDLEVDTSATSPEECAREILARLE 174 (174)
T ss_dssp HHHHHHHHHHHTSSSTTHH-----HHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT--
T ss_pred HHHHHHHHHhcCCcchHHH-----HHHHhhcccCCCCCEEEECCCCCHHHHHHHHHHHhC
Confidence 9999999887777654311 1111212111 34788988 799999999987653
No 132
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.07 E-value=2.9e-10 Score=87.82 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=32.1
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHH---HHHhhCCeEEEcCCCCHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY---EKLKDNIWIDIDADKDIDT 202 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Id~~~s~~~ 202 (227)
..|.++++.+|+++..+|+.+|. .+...+...++.... +.... ..++|+++++.++
T Consensus 122 ~~D~vi~V~a~~e~ri~Rl~~R~-~~~~~~~~~ri~~Q~~~~~k~~~-ad~vI~N~g~~~~ 180 (180)
T PF01121_consen 122 LCDEVIVVYAPEEIRIKRLMERD-GLSEEEAEARIASQMPDEEKRKR-ADFVIDNNGSLEE 180 (180)
T ss_dssp GSSEEEEEE--HHHHHHHHHHHH-TSTHHHHHHHHHTS--HHHHHHH--SEEEE-SSHHH-
T ss_pred hhceEEEEECCHHHHHHHHHhhC-CCcHHHHHHHHHhCCCHHHHHHh-CCEEEECCCCCCC
Confidence 46899999999999999997653 333333434443322 11111 3489999988764
No 133
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.03 E-value=2.6e-09 Score=82.94 Aligned_cols=167 Identities=19% Similarity=0.250 Sum_probs=86.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSA 76 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (227)
++++|+|+||+||||||+++.|.+.++.. +..+-+ ++.|..+..-| +.+......+..+.- ..+..
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~----~~~~g 76 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEY----GEYDG 76 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEE----EEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEE----eeecc
Confidence 36789999999999999999999987643 223333 44443221111 112222222110000 00000
Q ss_pred hhhh-hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecC
Q psy16874 77 NRWE-REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN 155 (227)
Q Consensus 77 ~~~~-~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~ 155 (227)
..+. ....+...+..|..+++ | .+...+..+......| ++||+.++
T Consensus 77 ~~YGt~~~~i~~~~~~gk~~il-----------------~---------------~~~~g~~~L~~~~~~~-~~IfI~~~ 123 (183)
T PF00625_consen 77 NYYGTSKSAIDKVLEEGKHCIL-----------------D---------------VDPEGVKQLKKAGFNP-IVIFIKPP 123 (183)
T ss_dssp EEEEEEHHHHHHHHHTTTEEEE-----------------E---------------ETHHHHHHHHHCTTTE-EEEEEEES
T ss_pred hhhhhccchhhHhhhcCCcEEE-----------------E---------------ccHHHHHHHHhcccCc-eEEEEEcc
Confidence 0111 12456666778877777 4 1112233333333345 57777655
Q ss_pred -HHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 156 -EEALQRRKGFGDERYEQTDFQRKVAE---NYEKLKDNIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 156 -~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
++.+.+|+..++..- .....+++.. .+........ +|.+ .++++++.+|.++|++
T Consensus 124 s~~~l~~~l~~r~~~~-~~~i~~r~~~~~~~~~~~~~fd~-vi~n-~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 124 SPEVLKRRLRRRGDES-EEEIEERLERAEKEFEHYNEFDY-VIVN-DDLEEAVKELKEIIEQ 182 (183)
T ss_dssp SHHHHHHHHHTTTHCH-HHHHHHHHHHHHHHHGGGGGSSE-EEEC-SSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhcccccc-HHHHHHHHHHHHHHHhHhhcCCE-EEEC-cCHHHHHHHHHHHHHh
Confidence 788888886644321 1223333333 2332211134 4443 3899999999999875
No 134
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=99.02 E-value=2.4e-09 Score=94.05 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
..+.+|+|+|.++|||+..++.|.+.++.+|+.|..+..|.. .+....+ +...
T Consensus 297 ~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~----~E~~~~~-----------------------lwRf 349 (493)
T TIGR03708 297 KRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTD----EEKAQHY-----------------------LWRF 349 (493)
T ss_pred CCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCH----HHHcCcH-----------------------HHHH
Confidence 468899999999999999999999999999999998887752 1111111 1233
Q ss_pred HHHHH-cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh-hh------hhccc---CCCCCCCEEEEeec
Q psy16874 86 TKLIE-QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-SW------CFQPE---KGLPKPDAVLLFKL 154 (227)
Q Consensus 86 ~~~~~-~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~-~~------~~~~~---~~~~~pd~vi~L~~ 154 (227)
.+.++ .|.+.|. ||+||............+. +| +..++ ......-+.+||++
T Consensus 350 ~~~lP~~G~i~iF-----------------dRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhI 412 (493)
T TIGR03708 350 WRHIPRRGRITIF-----------------DRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHI 412 (493)
T ss_pred HHhCCCCCeEEEE-----------------cCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEc
Confidence 33333 6778888 9999976554433211111 11 11111 12335568999999
Q ss_pred CHHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhhC------CeEEEcCCCCH---HHHHHHHHHHHH
Q psy16874 155 NEEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKDN------IWIDIDADKDI---DTLGLIVKDIVI 212 (227)
Q Consensus 155 ~~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~~s~---~~v~~~I~~~i~ 212 (227)
|.++..+|+..|.+. +. +.+.......+|++.... ||++|+++... -.|...|.+.|.
T Consensus 413 sk~EQ~~R~~~r~~~p~k~WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~ 490 (493)
T TIGR03708 413 DKEEQLRRFEERENTPFKRYKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIE 490 (493)
T ss_pred CHHHHHHHHHHHhcCCccCCcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHH
Confidence 999999999765322 11 123333444455555432 99999988432 234444444444
No 135
>PRK07667 uridine kinase; Provisional
Probab=99.01 E-value=8.9e-09 Score=80.64 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
...+|.|.|++||||||+++.|++.++..++++..+...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 457899999999999999999999999888887776643
No 136
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.98 E-value=8.2e-09 Score=81.70 Aligned_cols=32 Identities=44% Similarity=0.629 Sum_probs=28.5
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
|.. +++.+|+|.|++||||||+++.|...++.
T Consensus 1 ~~~--~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 1 MDK--PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCC--CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 555 78899999999999999999999998864
No 137
>KOG0635|consensus
Probab=98.97 E-value=2.7e-09 Score=78.43 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=33.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++|+.|+++|.+||||||++-.|.+.|-.+|..+..++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LD 66 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILD 66 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEec
Confidence 57899999999999999999999999998887665554
No 138
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.96 E-value=3.6e-09 Score=83.13 Aligned_cols=30 Identities=37% Similarity=0.388 Sum_probs=27.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
.++.+|.|.|++||||||+++.|...++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999999855
No 139
>COG0645 Predicted kinase [General function prediction only]
Probab=98.95 E-value=3.1e-09 Score=79.84 Aligned_cols=146 Identities=15% Similarity=0.119 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
++++++.|.+||||||++..|++.++...+.++.+++.-.+.+....- . ............|. ..+.....
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~----~-~g~ys~~~~~~vy~----~l~~~A~l 71 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRG----P-AGLYSPAATAAVYD----ELLGRAEL 71 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccC----C-CCCCcHHHHHHHHH----HHHHHHHH
Confidence 368999999999999999999999998888777665532221110000 0 11112222222111 12244555
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
.+..|..||. |.-+.. ...+ +....+......+...|.+.+|++++..|+..|.
T Consensus 72 ~l~~G~~VVl-----------------Da~~~r----~~~R-----~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~ 125 (170)
T COG0645 72 LLSSGHSVVL-----------------DATFDR----PQER-----ALARALARDVGVAFVLIRLEAPEEVLRGRLAARK 125 (170)
T ss_pred HHhCCCcEEE-----------------ecccCC----HHHH-----HHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhC
Confidence 6788999988 832222 2111 2222233444456678999999999999998776
Q ss_pred CCccc--HHHHHHHHHHHHHHhh
Q psy16874 168 ERYEQ--TDFQRKVAENYEKLKD 188 (227)
Q Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~ 188 (227)
....+ -..+..+....+.+..
T Consensus 126 ~d~sDA~~~il~~q~~~~~~~~~ 148 (170)
T COG0645 126 GDASDATFDILRVQLAEDEPWTE 148 (170)
T ss_pred CCcccchHHHHHHHHhhhCCccc
Confidence 54432 4444555544444443
No 140
>PLN02772 guanylate kinase
Probab=98.95 E-value=1.8e-08 Score=85.95 Aligned_cols=168 Identities=12% Similarity=0.118 Sum_probs=89.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSA 76 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (227)
..++|+|+||+||||||+++.|.+.+.. .++.+-+ +|.|..+..-| +.+......+.- .. ...+.-
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~F-lE---~~e~~G 209 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKF-LE---FASVHG 209 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCcc-ce---eeeecC
Confidence 4568999999999999999999987653 2444433 55554322211 112222222211 11 100111
Q ss_pred hhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecC
Q psy16874 77 NRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN 155 (227)
Q Consensus 77 ~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~ 155 (227)
..+.. .+.+...+.+|.++++ | ++.+-..++....+.+-.++++..+
T Consensus 210 n~YGTsk~~V~~vl~~Gk~vIL-----------------d---------------LD~qGar~Lr~~~l~~v~IFI~PPS 257 (398)
T PLN02772 210 NLYGTSIEAVEVVTDSGKRCIL-----------------D---------------IDVQGARSVRASSLEAIFIFICPPS 257 (398)
T ss_pred ccccccHHHHHHHHHhCCcEEE-----------------e---------------CCHHHHHHHHHhcCCeEEEEEeCCC
Confidence 12222 2456666778887777 4 1112122222222234345555556
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh-----CCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 156 EEALQRRKGFGDERYEQTDFQRKVAENYEKLKD-----NIWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 156 ~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
.+++.+|+..|+..- ..+..+++..+..++.. .--++|.++ ++++.++++.++|.
T Consensus 258 lEeLe~RL~~RGtes-eE~I~kRL~~A~~Ei~~~~~~~~fD~vIvND-dLe~A~~~L~~iL~ 317 (398)
T PLN02772 258 MEELEKRLRARGTET-EEQIQKRLRNAEAELEQGKSSGIFDHILYND-NLEECYKNLKKLLG 317 (398)
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhccccCCCCEEEECC-CHHHHHHHHHHHHh
Confidence 899999998654332 23444555554333321 112344444 89999999998875
No 141
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.94 E-value=8.1e-09 Score=78.57 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=64.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC----C-CCHHHHHHHHHhhh-hhhhhH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI----E-LPDQAAHLLFSANR-WEREPT 84 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~-~~~~~~ 84 (227)
|+|+|++|+||||+++.|+++ |+++. .++. +.++.... . .+.......+.... ....+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~v--~E~a---------r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 66 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPVV--PEYA---------REIIEEGGRRDRDTLPWEDDLLAFQEGILEQQLEA 66 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EEE----TT---------HHHHHHSSSS-TTSS-TT-THHHHHHH--HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeEE--eecH---------HHHHHHhccccchhhhhcchHHHHHHHHHHHHHHH
Confidence 899999999999999999988 44433 3331 22332211 1 11100000011000 011112
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
.. ......++|+ ||..++..+|.....+-....+..... ....|++|+|..++.. ..-.
T Consensus 67 ~~-~~~~~~~vi~-----------------Dr~~~d~~aY~~~~~~~~~~~l~~~~~-~~~yd~v~~l~~~~~~--~~D~ 125 (163)
T PF13521_consen 67 EA-SAKSSDVVIC-----------------DRGPLDTLAYSEFYFGDYPEELEREAR-LSRYDLVFLLPPDPPW--EQDG 125 (163)
T ss_dssp HH-HHH-SSEEEE-----------------SS-HHHHHHHHHHHHS---HHHHHHHH-HS--SEEEEEE-----------
T ss_pred HH-hhcCCCcEEE-----------------eCChHHHHHHHHHhcCcchHHHHHHHH-hCCCCEEEEeCCcccc--CCCC
Confidence 11 1246788999 999999888876652221233322211 2356899998876633 2111
Q ss_pred CCCCCcc-cHHHHHHHHHHHHHHhhCCeEEEcCCCCHHH
Q psy16874 165 FGDERYE-QTDFQRKVAENYEKLKDNIWIDIDADKDIDT 202 (227)
Q Consensus 165 ~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~ 202 (227)
.|....+ .....+.+.+.|+...- ++++|+ ++|.++
T Consensus 126 ~R~~~~~~r~~~~~~~~~~l~~~~~-~~~~v~-~gs~~e 162 (163)
T PF13521_consen 126 VRPEDPEERERIDELLKELLERHGI-PYIIVP-SGSIEE 162 (163)
T ss_dssp -------SHHHHHHHHHHHHHGGG----EEEE--SSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCC-eEEEeC-CCChhh
Confidence 1212222 23444445555554332 667775 556554
No 142
>PRK06547 hypothetical protein; Provisional
Probab=98.94 E-value=6.7e-09 Score=79.76 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=32.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..+++|.|.|++||||||+++.|++.++...++.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~ 50 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLY 50 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccccee
Confidence 56789999999999999999999999877666666544
No 143
>PTZ00301 uridine kinase; Provisional
Probab=98.92 E-value=7.3e-09 Score=82.01 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.++|.|.|++||||||+|+.|.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 578999999999999999999988853
No 144
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=98.90 E-value=6.4e-10 Score=83.20 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=64.8
Q ss_pred Ccccch-hhhhhhcc--CC-CC---h----hhhhcccCCCCC-CCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHH
Q psy16874 115 DRYSFS-GVAFSAAK--EG-MD---I----SWCFQPEKGLPK-PDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKV 179 (227)
Q Consensus 115 Dr~~~~-~~~~~~~~--~~-~~---~----~~~~~~~~~~~~-pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~ 179 (227)
||++++ .+.+.... .| ++ . .+...+....+. ||++|||++||+++.+|+.+|++..| +.+|++.+
T Consensus 25 eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L 104 (146)
T PF01712_consen 25 ERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEIPKSPDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERL 104 (146)
T ss_dssp ES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHH
T ss_pred cCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHH
Confidence 999988 55544331 12 11 1 222223345667 99999999999999999999888777 48999999
Q ss_pred H-HHHHHHhhC----CeEEEcCCC-CHHHHHHHHHHHH
Q psy16874 180 A-ENYEKLKDN----IWIDIDADK-DIDTLGLIVKDIV 211 (227)
Q Consensus 180 ~-~~~~~~~~~----~~~~Id~~~-s~~~v~~~I~~~i 211 (227)
+ +.|+.+... ++++||++. +..+..+++...+
T Consensus 105 ~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~ 142 (146)
T PF01712_consen 105 HEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVI 142 (146)
T ss_dssp HHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHH
T ss_pred hHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHH
Confidence 9 899998754 889999885 5555555555444
No 145
>PRK06761 hypothetical protein; Provisional
Probab=98.90 E-value=1.3e-07 Score=77.80 Aligned_cols=38 Identities=34% Similarity=0.385 Sum_probs=33.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
+++|+|+|++||||||+++.|++.+...++++..+..+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~ 40 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEG 40 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecC
Confidence 56899999999999999999999999888888775543
No 146
>PRK07261 topology modulation protein; Provisional
Probab=98.89 E-value=6.8e-09 Score=79.73 Aligned_cols=32 Identities=31% Similarity=0.265 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
.|+|+|++||||||+++.|++.++...++.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 58999999999999999999988665555443
No 147
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.86 E-value=1.8e-07 Score=77.48 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=40.9
Q ss_pred CCCEEEEeecCHHHHHHhcCCC--CC-Cccc---HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFG--DE-RYEQ---TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r--~~-~~~~---~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
....+|||+++++++.+|+..+ .+ ...+ .+.+...++.++.......++||++ .+++++.+.|.+.+..
T Consensus 85 ~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 85 IDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred CcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 3446899999999999998642 11 1222 2222222222222221123788876 6899999988887743
No 148
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.85 E-value=1.4e-08 Score=79.64 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+++|+|.|+|||||||+++.|++.++.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999999998765
No 149
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.80 E-value=1.2e-08 Score=79.28 Aligned_cols=36 Identities=33% Similarity=0.246 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEeeCC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVNFP 45 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~~~ 45 (227)
+|.|.|++||||||+|+.|++.+. ...++.+.+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 489999999999999999999983 444554444433
No 150
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.78 E-value=2.8e-07 Score=79.84 Aligned_cols=176 Identities=15% Similarity=0.089 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC---CCCHHHHHHHHHhhhhhhhhH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI---ELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 84 (227)
.+.|+|+|++|||||||++.|+++++... +.+.. .+.+.+-..... .+.+.... .+. .... .
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~-----v~E~~-----R~~~~~~~~~~~~~l~~~D~~~i-a~~--~~~~--~ 283 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTS-----AWEYG-----REYVFSHLGGDEMALQYSDYDKI-ALG--HAQY--I 283 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCe-----eeecc-----HHHHHHhhcCCccCCChhhhHHH-Hhh--hHHH--H
Confidence 45799999999999999999999875432 11111 011111111111 11111111 000 1111 1
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
-........++++ |+-..++..|.....+.....+..+.... ..|++++++.++.-...=+.
T Consensus 284 ~~~~~~a~~~~f~-----------------Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~-ryDlvlll~pd~Pwv~DGlR 345 (399)
T PRK08099 284 DFAVKYANKVAFI-----------------DTDFVTTQAFCKKYEGREHPFVQALIDEY-RFDLTILLENNTPWVADGLR 345 (399)
T ss_pred HHHHHhcCCeEEE-----------------eCChHHHHHHHHHhCCCCCHHHHHHHHhC-CCCEEEEcCCCCCcccCCcc
Confidence 1112234668888 99999888887665443334444444332 46788888555333222000
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874 165 FGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS 218 (227)
Q Consensus 165 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~ 218 (227)
...+.-....+...+.+.|+...- ++++|+ +++.++-+.+..+.|++++..+
T Consensus 346 ~~~D~e~R~~f~~~l~~~l~~~g~-~~v~l~-~g~~~eR~~~a~~~i~~~l~~~ 397 (399)
T PRK08099 346 SLGSSVDRKRFQNLLKEMLKENNI-EYVHVE-SPDYDKRYLRCVELVDQMLGEQ 397 (399)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCC-CEEEEC-CCCHHHHHHHHHHHHHHHhhcc
Confidence 000111124455555556655432 677773 4579999999999999888654
No 151
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.78 E-value=9.5e-09 Score=91.29 Aligned_cols=131 Identities=13% Similarity=0.144 Sum_probs=78.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
..+.+|++.|+|||||||+++.++...+...++.+. +.. + ......+
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~-------------lg~----------~----------~~~~~~a 413 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADT-------------LGS----------T----------QNCLTAC 413 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHH-------------HHH----------H----------HHHHHHH
Confidence 457899999999999999999998876543332111 110 0 0011356
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
..++.+|..||+ |. +++....+ ..+..+.+....+-..+++++|.+++.+|+..
T Consensus 414 ~~~L~~G~sVVI-----------------Da----Tn~~~~~R-----~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~ 467 (526)
T TIGR01663 414 ERALDQGKRCAI-----------------DN----TNPDAASR-----AKFLQCARAAGIPCRCFLFNAPLAQAKHNIAF 467 (526)
T ss_pred HHHHhCCCcEEE-----------------EC----CCCCHHHH-----HHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHh
Confidence 677888988888 72 22222222 22233444444566799999999999999976
Q ss_pred CCCC-cc----cHHHHHHHHHHHHHHhhC----CeEEEc
Q psy16874 166 GDER-YE----QTDFQRKVAENYEKLKDN----IWIDID 195 (227)
Q Consensus 166 r~~~-~~----~~~~~~~~~~~~~~~~~~----~~~~Id 195 (227)
|... .. ....+..+.+.|+..... .++.|+
T Consensus 468 R~~~~~s~~~vp~~v~~~~~k~fE~Pt~~EGF~~I~~v~ 506 (526)
T TIGR01663 468 RELSDSAHIKIKDMVFNGMKKKFEAPALAEGFIAIHEIN 506 (526)
T ss_pred hccCCcccCCCCHHHHHHHHhhCCCCCcccCceEEEEEe
Confidence 6321 11 134555666666544322 455555
No 152
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.77 E-value=2.1e-08 Score=72.66 Aligned_cols=22 Identities=50% Similarity=0.555 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l 32 (227)
|+|.|++||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 153
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.76 E-value=7.4e-08 Score=75.64 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+|.|.|++||||||+++.|...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 154
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.76 E-value=1.7e-07 Score=77.50 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=27.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+.|++|+|.|++||||||++..|+++|+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468899999999999999999999999654
No 155
>KOG3062|consensus
Probab=98.70 E-value=4.9e-07 Score=70.86 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCC-eEE-eeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIP-SQF-VNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
.+|+|+|.|.|||||.++.|+++|...+-. +.. +.... +|- -.+........+. +.|-.....+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~-----~~ns~y~~s~~EK----~lRg~L~S~v~ 68 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGI-----EKNSNYGDSQAEK----ALRGKLRSAVD 68 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCC-----CCcccccccHHHH----HHHHHHHHHHH
Confidence 479999999999999999999999988754 333 22111 110 0000000111111 00111113455
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCccc-chhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYS-FSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
..+.++++||+ |.-- +.||-|..+. ..+.......+|+..+|.+.+++=...
T Consensus 69 R~Lsk~~iVI~-----------------DslNyIKGfRYeLyC----------~ak~~~tt~Cvv~t~vp~e~~r~~Ns~ 121 (281)
T KOG3062|consen 69 RSLSKGDIVIV-----------------DSLNYIKGFRYELYC----------EAKAARTTYCVVHTAVPQELCREWNSE 121 (281)
T ss_pred hhcccCcEEEE-----------------ecccccccceeeeee----------ehhccceeEEEEEecCCHHHHHHhccc
Confidence 56778999999 8442 2344444333 112222344689999999999887765
Q ss_pred CCCCcc---cHHHHHHHHHHHHHHhh
Q psy16874 166 GDERYE---QTDFQRKVAENYEKLKD 188 (227)
Q Consensus 166 r~~~~~---~~~~~~~~~~~~~~~~~ 188 (227)
+.+.-+ ..+.++.+-..|++...
T Consensus 122 ~~~p~e~gy~~e~le~L~~RyEeP~s 147 (281)
T KOG3062|consen 122 REDPGEDGYDDELLEALVQRYEEPNS 147 (281)
T ss_pred CCCCCCCCCCHHHHHHHHHHhhCCCc
Confidence 544322 36777888888877654
No 156
>KOG3308|consensus
Probab=98.68 E-value=3.3e-07 Score=70.63 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=32.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEeeCCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVNFPD 46 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~~~~ 46 (227)
++..+|.|.|.+.|||||+|+.|.+.++.. .|+-+++-+|.
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~ 43 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPE 43 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCch
Confidence 456789999999999999999999998753 44445565554
No 157
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1e-07 Score=75.81 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=90.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
...+|+|+|-++|||.-.++.+.++|+.++..+..+..|+. . +.-+.|+ ....
T Consensus 73 ~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt~-~---E~~qwY~-----------------------qRy~ 125 (270)
T COG2326 73 QRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPTD-R---ERGQWYF-----------------------QRYV 125 (270)
T ss_pred CeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCCh-H---hhccHHH-----------------------HHHH
Confidence 45689999999999999999999999999999998888752 1 1112221 2222
Q ss_pred HHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh----------hhhhcccCCCCCCCEEEEeecC
Q psy16874 87 KLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI----------SWCFQPEKGLPKPDAVLLFKLN 155 (227)
Q Consensus 87 ~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~pd~vi~L~~~ 155 (227)
+.+ ..|.+|+. ||+||....-......... ..++.+.-.....-+.+||.++
T Consensus 126 ~~lPa~GeiviF-----------------dRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is 188 (270)
T COG2326 126 AHLPAAGEIVIF-----------------DRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSIS 188 (270)
T ss_pred HhCCCCCeEEEe-----------------chhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCC
Confidence 233 36888888 9999863322211101111 1111111223344579999999
Q ss_pred HHHHHHhcCCCCCCc------c-----cHHHHHHHHHHHHHHhhC------CeEEEcCC
Q psy16874 156 EEALQRRKGFGDERY------E-----QTDFQRKVAENYEKLKDN------IWIDIDAD 197 (227)
Q Consensus 156 ~e~~~~R~~~r~~~~------~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~ 197 (227)
.++..+|...|.+.- + +.+.......+|++.... ||++|-++
T Consensus 189 ~eeQ~~RF~~R~~dP~K~WKlSp~D~~~r~~WddYt~A~~em~~~T~T~~APW~vV~ad 247 (270)
T COG2326 189 REEQLERFLERRNDPLKQWKLSPMDLESRDRWDDYTKAKDEMFARTSTPEAPWYVVPAD 247 (270)
T ss_pred HHHHHHHHHHHhcCHHhccCCCHHHHHHHHhHHHHHHHHHHHHhccCCCCCCeEEEeCC
Confidence 999999997653221 1 122222333355554421 99999988
No 158
>PRK15453 phosphoribulokinase; Provisional
Probab=98.65 E-value=1.4e-07 Score=77.16 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=31.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++++|+|+|.+||||||+++.|++.++..++.+..+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 46789999999999999999999999987666654443
No 159
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.63 E-value=1.1e-06 Score=70.66 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
.++.+|.|.|++||||||+++.|+..+...+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 467899999999999999999999999876544
No 160
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.60 E-value=2.1e-08 Score=72.28 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPS 39 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~ 39 (227)
+|+|.|+|||||||+|+.|++.++..++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 589999999999999999999997654443
No 161
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.60 E-value=9.6e-07 Score=76.91 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 43 (227)
.+|.+|+|.|++||||||++..|+..++.. .++++.++
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHH
Confidence 358999999999999999999999999875 33544433
No 162
>PHA03134 thymidine kinase; Provisional
Probab=98.58 E-value=4.5e-06 Score=69.74 Aligned_cols=173 Identities=16% Similarity=0.120 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC--CCch-HHHHHHHhh-----cCCCCHH-H-H----HH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT--ISTG-HIIDEYLRK-----KIELPDQ-A-A----HL 72 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-----~~~~~~~-~-~----~~ 72 (227)
.-..|+|+|+.|.||||.++.|... ...+-++.++.||-.. .-++ +.+..++.. .+++... . . .+
T Consensus 12 ~~~rvYlDG~~GvGKTT~~~~l~~~-~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~Q 90 (340)
T PHA03134 12 RIVRIYLDGAYGIGKSTTGRVMASA-ASGGGPTLYFPEPMAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHYQ 90 (340)
T ss_pred cEEEEEEeCCCcCCHHHHHHHHHHh-ccCCCceEEecCcHHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHHH
Confidence 3346999999999999999888773 3334456777776311 0111 234444332 2223222 1 1 11
Q ss_pred HHHhhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhh---hhhccC-CCChhhhhcccCCCC--C
Q psy16874 73 LFSANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA---FSAAKE-GMDISWCFQPEKGLP--K 145 (227)
Q Consensus 73 ~~~~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~--~ 145 (227)
.-++..+... ..+.+.+..+.. ........-+|+||+..+... ...... .+....+..+...++ .
T Consensus 91 ~~fatP~~~~~~~~~~~~~~~~~--------~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~~~p~~~ 162 (340)
T PHA03134 91 ARFATPYLILHDRLSTLFGPPSL--------ARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAATLPREP 162 (340)
T ss_pred HHhcChHHHHHHHHHHhcCCCCC--------CCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHHhCCCCC
Confidence 1222222222 233444332110 000111223577999876433 222222 233344444443333 2
Q ss_pred C-CEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874 146 P-DAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD 188 (227)
Q Consensus 146 p-d~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~ 188 (227)
| +.+|+++.++++..+|+.+|.+..| +.+++..++..|.-+.+
T Consensus 163 pG~niVl~~l~~~e~~~Rl~~R~R~gE~id~~yL~~l~n~Y~~l~n 208 (340)
T PHA03134 163 PGGNLVVTTLNPDEHLRRLRARARIGEQIDAKLIAALRNVYAMLVN 208 (340)
T ss_pred CCCeEEEEeCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Confidence 5 8999999999999999987655444 47888888887776653
No 163
>PHA03135 thymidine kinase; Provisional
Probab=98.56 E-value=4.8e-06 Score=69.66 Aligned_cols=169 Identities=15% Similarity=0.045 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCC--CchHHHHHHHhh-----cCCCCHHH------HHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTI--STGHIIDEYLRK-----KIELPDQA------AHLLFS 75 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~------~~~~~~ 75 (227)
..|+|+|+.|+||||+++.|++.. ..+-++..+.||-... -+.+.+..++.. .+.+.... ..+.-+
T Consensus 11 ~rIYlDG~~GvGKTT~~~~l~~~~-~~~~~vl~vpEPM~YWr~~f~d~i~~Iy~tq~r~~~G~ls~~~as~~~~~~Q~kf 89 (343)
T PHA03135 11 IRVYLDGPFGIGKTSMLNEMPDHS-PDGVPVLKVFEPMKYWRCYFTDLVVAVNDTPERRRRGELSLFQSSMIVAALQAKF 89 (343)
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc-CCCCceEEecCcHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhccHHHHHHHHHh
Confidence 358999999999999998888743 2233466677763211 112233333332 12222110 011111
Q ss_pred hhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhh---hhcc-CCCChhhhhccc----CCCCCC
Q psy16874 76 ANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF---SAAK-EGMDISWCFQPE----KGLPKP 146 (227)
Q Consensus 76 ~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~---~~~~-~~~~~~~~~~~~----~~~~~p 146 (227)
+..+... ..+.+.+... . ........-+|+||+..+...- .... ..+....+..+. ...+..
T Consensus 90 atP~~~~~~~l~~~~~~~-~--------~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~ls~~~l~sl~~~lp~~~pG~ 160 (343)
T PHA03135 90 ADPYLVFHERLSSKCHGK-I--------GTRGNPSLILILDRHPVSATVCFPIARHLLGDCSLEMLISSIIRLPLEPPGC 160 (343)
T ss_pred cchHHHHHHHHHHHhccc-C--------CCCCCCCceEEEecCCCCCceeeehhhcccCCCCHHHHHHHHHhCCcCCCCC
Confidence 2222221 2222222211 0 0000111224669998764332 2211 123333333332 223334
Q ss_pred CEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHh
Q psy16874 147 DAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLK 187 (227)
Q Consensus 147 d~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~ 187 (227)
+++|+...++++..+|+.+|++..| +.+++..++..|.-+.
T Consensus 161 niVl~~L~~~~E~~rRl~~R~R~gE~~d~~yL~aL~n~Y~~l~ 203 (343)
T PHA03135 161 NLVITILPDEKEHVNRLSSRNRPGETTDRNMLRALNAVYSSLV 203 (343)
T ss_pred eEEEEECCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence 5666665578999999987754444 4688888888776654
No 164
>COG3911 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=9.7e-07 Score=64.96 Aligned_cols=153 Identities=13% Similarity=0.029 Sum_probs=77.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
.+++.++++++|.||+||||+.+.|++. |+-+ ..++. ...+..--.+++-..+|.....|+..... .
T Consensus 5 ~~nR~~~fIltGgpGaGKTtLL~aLa~~----Gfat--vee~~-----r~ii~~es~~gg~~lPW~D~~afael~~~--~ 71 (183)
T COG3911 5 PFNRHKRFILTGGPGAGKTTLLAALARA----GFAT--VEEAG-----RDIIALESAQGGTALPWTDPGAFAELVGL--Q 71 (183)
T ss_pred ccccceEEEEeCCCCCcHHHHHHHHHHc----Ccee--eccch-----hhHHHHHHhcCCCcCCccChHHHHHHHHH--H
Confidence 3455678999999999999999888874 4332 22221 12222222334333334333333221111 1
Q ss_pred HHHHH--HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCC-hhhhhcccCCCCCCCEEEEeecCHHHHH
Q psy16874 84 TLTKL--IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMD-ISWCFQPEKGLPKPDAVLLFKLNEEALQ 160 (227)
Q Consensus 84 ~i~~~--~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pd~vi~L~~~~e~~~ 160 (227)
.+.+. .+.+..|+. ||.+.+..++...--|.. ...+..+.... ...--+||.-|...+.
T Consensus 72 ~l~q~r~~~~~~~vFf-----------------DR~~~da~a~l~~lsga~la~~v~~~~~~~-~Yn~rVfl~qp~~~iy 133 (183)
T COG3911 72 RLRQTRSAAVGGRVFF-----------------DRGPPDALAYLRFLSGALLADEVATIVREG-RYNPRVFLVQPWPFIY 133 (183)
T ss_pred HHHHhhcccccCceee-----------------ccCcHHHHHHHHHhcccHHHHHHHHHHHhc-CCCCcEEecCCccccc
Confidence 11111 245666776 999988766654221211 01122222221 1122455555555555
Q ss_pred HhcCCCCCCccc-HHHHHHHHHHHHHHh
Q psy16874 161 RRKGFGDERYEQ-TDFQRKVAENYEKLK 187 (227)
Q Consensus 161 ~R~~~r~~~~~~-~~~~~~~~~~~~~~~ 187 (227)
+--..|.-..+. ..+.+.+.++|..+.
T Consensus 134 qqde~Rk~tldeAv~~~e~lv~aYt~LG 161 (183)
T COG3911 134 QQDEERKITLDEAVAFYEVLVAAYTELG 161 (183)
T ss_pred cchhhcccCHHHHHHHHHHHHHHHHhcC
Confidence 544333333332 667778888888874
No 165
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.52 E-value=6.2e-07 Score=71.66 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh--CCCCeEEe
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNK--NNIPSQFV 42 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~--~~~~~~~~ 42 (227)
+|.|.|++||||||+++.|...+.. .+.++..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi 35 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELI 35 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 4889999999999999999999974 34444443
No 166
>PHA03138 thymidine kinase; Provisional
Probab=98.52 E-value=4.6e-06 Score=69.76 Aligned_cols=155 Identities=15% Similarity=-0.006 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC--CCch-HHHHHHHhh-----cCCCCH-----HHH-HHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT--ISTG-HIIDEYLRK-----KIELPD-----QAA-HLLF 74 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-----~~~~~~-----~~~-~~~~ 74 (227)
..|+|+|+.|+||||.++.+.+.+...+-.+.++.||-.. .-.+ +.+..++.. .+++.. +.. .+.+
T Consensus 13 ~riYleG~~GvGKTT~~~~~l~~~~~~~~~vl~vpEPm~yWr~v~~~d~l~~iY~~q~r~~~G~~S~~da~~~~a~~Q~~ 92 (340)
T PHA03138 13 LRIYLDGAFGIGKTTAAEAFLHGFAINPNRIFFIGEPLMYWRNLAGDDAICGIYGTQTRRKNGDISDEDAQRLTAHFQGL 92 (340)
T ss_pred EEEEEECCCCcCHHhHHHHHHHhhhcCCCceEEeeCchHHHHHhccccHHHHHHHHhhhhhcccccccchhHHHHHHHHH
Confidence 4699999999999999998888766544446677777421 1112 345555522 112211 221 3344
Q ss_pred Hhhhhhhhh-HHHHHHHcCCEEEEecccccccccCCCC---CCCCcccchhh---hhhhccC-CCChhhhhccc----CC
Q psy16874 75 SANRWEREP-TLTKLIEQGITLEIMHSSLENEKNLDQG---CTNDRYSFSGV---AFSAAKE-GMDISWCFQPE----KG 142 (227)
Q Consensus 75 ~~~~~~~~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g---~i~Dr~~~~~~---~~~~~~~-~~~~~~~~~~~----~~ 142 (227)
++..+.... .+...+.....-. .......+ +|+||+.++.. |...+.. .+....+..+. ..
T Consensus 93 f~tP~~~~~~~~~~~l~~~~~~~-------~~~~~~~p~~ili~DRHp~SA~vCFP~ary~~G~ls~~~l~~L~~~~p~~ 165 (340)
T PHA03138 93 FCSPHAILHAKILALMDQNPNDL-------ALKFFKEPVAIFLSDRHPIASNICFPISRYLVGDMSPAALPGFLFALPAE 165 (340)
T ss_pred hhhhHHHHHHHHHHHhccccCcc-------ccCCCCCCeEEEEeccccchhhHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 444444332 3333333220000 00011112 35599988743 3333322 23323232221 22
Q ss_pred CCCCCEEEEeecCHHHHHHhcCCCCCCcc
Q psy16874 143 LPKPDAVLLFKLNEEALQRRKGFGDERYE 171 (227)
Q Consensus 143 ~~~pd~vi~L~~~~e~~~~R~~~r~~~~~ 171 (227)
.+..++||++..++| ..+|+.+|.+..|
T Consensus 166 ~~g~nLVv~~l~~~E-~~~RL~~R~R~gE 193 (340)
T PHA03138 166 PEGTNLIVCTVSLPN-HLSRISKRARPGE 193 (340)
T ss_pred CCCCcEEEEeCCcHH-HHHHHHhcCCCcc
Confidence 345578888875555 9999987754444
No 167
>COG4639 Predicted kinase [General function prediction only]
Probab=98.51 E-value=3.5e-07 Score=67.76 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=44.1
Q ss_pred hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
..+.+.+.+|+..|. |- .+... .+..-+..+..........|++++|++.|.+|
T Consensus 60 ~~l~qrl~~Gk~tii-----------------dA-------tn~rr--~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aR 113 (168)
T COG4639 60 KQLEQRLRRGKFTII-----------------DA-------TNLRR--EDRRKLIDLAKAYGYKIYAIVFDTPLELCLAR 113 (168)
T ss_pred HHHHHHHHcCCeEEE-----------------Ec-------ccCCH--HHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHH
Confidence 456677889988888 71 11110 11133444555555667789999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHH
Q psy16874 163 KGFGDERYEQTDFQRKVAEN 182 (227)
Q Consensus 163 ~~~r~~~~~~~~~~~~~~~~ 182 (227)
...+ ++.-+.+.+.+....
T Consensus 114 Nk~~-~Rqv~~~VI~r~~r~ 132 (168)
T COG4639 114 NKLR-ERQVPEEVIPRMLRE 132 (168)
T ss_pred hhcc-chhCCHHHHHHHHHH
Confidence 8633 333334444444443
No 168
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=98.50 E-value=1.1e-05 Score=60.25 Aligned_cols=169 Identities=17% Similarity=0.113 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC---CCCHHHHHHHHHhhhhhhhhHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI---ELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i 85 (227)
+.++|.|+--|||||+++.|+..++... ...++.....-...+. ...++.... ..+..-.
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt~~-----------~wEY~Re~v~~~l~gdeal~y~Dy~~ia------~Gq~~~~ 71 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNTTS-----------AWEYGREYVFEHLGGDEALQYSDYAKIA------LGQAAYE 71 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHhCCCc-----------hhHHHHHHHHHHhCCchhhhhccHHHHH------hhhHHHH
Confidence 5799999999999999999999886411 1112211111111122 111111110 0011111
Q ss_pred HHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 86 TKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 86 ~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
..+. ....++++ |--..++.+++....|..-.++...-... ..|++|.|.-. +-+- .
T Consensus 72 d~av~~a~~v~fi-----------------DTD~itT~~~~~~y~gr~~P~~~~~i~~~-r~DL~lLl~p~--t~wv--a 129 (187)
T COG3172 72 DAAVRYANKVAFI-----------------DTDFLTTQAFCKKYEGREHPFLQALIAEY-RFDLTLLLEPN--TPWV--A 129 (187)
T ss_pred HHHHhCCCceEEE-----------------eccHHHHHHHHHHHcccCCchHHHHHhhc-ccceEEEcCCC--Ccee--C
Confidence 1111 24567777 87777777776555443324443332222 56888887544 3332 1
Q ss_pred CCCCCc----ccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874 165 FGDERY----EQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS 218 (227)
Q Consensus 165 ~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~ 218 (227)
.+.+.. +..++++.+.+..+.... ++++|++. +-.+-+.+..+.+.+++...
T Consensus 130 DG~R~~~~~~~R~~F~~~l~~~L~~~~~-~~v~i~~~-~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 130 DGLRSLGSSVQRQEFQNLLEQMLEENNI-PFVVIEGE-DYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHhCC-cEEEEcCC-CHHHHHHHHHHHHHHHHhcc
Confidence 221222 235566666655555422 78888765 66778888888888887654
No 169
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.49 E-value=9.8e-07 Score=71.74 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|+|+|.+||||||+++.|.+.++..++++..+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 4899999999999999999999988777765544
No 170
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=3e-06 Score=67.73 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=33.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEeeC
Q psy16874 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVNF 44 (227)
Q Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~~ 44 (227)
+|++|.+|.|-|++|.||||++..|+..|+.. .++.+.+++
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE 126 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE 126 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence 45779999999999999999999999999865 445454544
No 171
>PRK05439 pantothenate kinase; Provisional
Probab=98.45 E-value=2.2e-06 Score=71.59 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~ 43 (227)
+++.+|.|.|++||||||+|+.|.+.+... +.++..+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 467899999999999999999999988753 44554433
No 172
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.44 E-value=4.1e-07 Score=75.33 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.|.+|.|.|++||||||+++.|...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56889999999999999999999988863
No 173
>KOG4238|consensus
Probab=98.40 E-value=5.8e-07 Score=75.04 Aligned_cols=37 Identities=32% Similarity=0.499 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++..|+++|.+|+||||++-.|.+.|...||+|..+.
T Consensus 49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ld 85 (627)
T KOG4238|consen 49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLD 85 (627)
T ss_pred cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccC
Confidence 4678999999999999999999999999999997765
No 174
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.39 E-value=6.2e-06 Score=67.49 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=37.8
Q ss_pred CCCEEEEeecCHHHHHHhcCC--CCCCccc-------HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGF--GDERYEQ-------TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIV 211 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~--r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i 211 (227)
..--+|||+|+.+++.+|-.. |...... .+.-+.+.+..+..+ -++||++ .++.+..+.|.+.+
T Consensus 81 ~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~A---d~vIDTs~l~~~~Lr~~i~~~~ 154 (284)
T PF03668_consen 81 IDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERA---DLVIDTSNLSVHQLRERIRERF 154 (284)
T ss_pred CceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhC---CEEEECCCCCHHHHHHHHHHHh
Confidence 334699999999999999854 2222221 122222222333333 4889977 77777655555544
No 175
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.35 E-value=7.6e-07 Score=57.77 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|+|+|++||||||+++.|++.+ .+.++..+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~ 32 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLD 32 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEe
Confidence 47899999999999999999998 445555444
No 176
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.33 E-value=2.9e-06 Score=62.74 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+|+|+||+||||||+++.|.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4789999999999999999997653
No 177
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.31 E-value=1.4e-05 Score=67.56 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHH-HHHHHHhhhhhhhhHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA-AHLLFSANRWEREPTLT 86 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 86 (227)
+..|+|.|++||||||+++.|+..++. ++ +.++. -+.+++....+..+...- ...+... . ....
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~---~~--v~E~~-----R~~~~~~~~~~~~l~~~d~~~i~~g~--~---~~~~ 226 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNT---TS--AWEYA-----REYVEEKLGGDEALQYSDYAQIALGQ--Q---RYID 226 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC---CE--Eeehh-----HHHHHHhcCCCcccCHHHHHHHHHHH--H---HHHH
Confidence 457999999999999999999997754 22 22221 112222221122222111 0111110 0 0111
Q ss_pred HHHH-cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIE-QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~-~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
.++. ...++++ |+-..++..|.....+....++...... ...|+++++..+.+ +.--..
T Consensus 227 ~~~~~a~~iif~-----------------D~~~~~t~~y~~~~~~~~~~~~~~~~~~-~~ydl~~l~~p~~~--~~~D~~ 286 (325)
T TIGR01526 227 YAVRHAHKIAFI-----------------DTDFITTQVFAKQYEGREHPFLDSDIAE-YPFDLTLLLKPNTE--WVDDGL 286 (325)
T ss_pred HHHhhcCCeEEE-----------------cCChHHHHHHHHHHcCCCCHHHHHHHHh-cCCCEEEECCCCCC--CccCCc
Confidence 2222 4568888 9998888887766533222333222222 35677777766644 443322
Q ss_pred CCCCcc--cHHHHHHHHHHHHHHhhCCeEEEcC
Q psy16874 166 GDERYE--QTDFQRKVAENYEKLKDNIWIDIDA 196 (227)
Q Consensus 166 r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Id~ 196 (227)
|....+ ...+.+.+.+.+++..- .+++|.+
T Consensus 287 R~~~~~~~R~~~~~ll~~~l~~~G~-~~v~Vtg 318 (325)
T TIGR01526 287 RSLGSQKQRQEFQQLLKKLLDEYGV-PFVVIES 318 (325)
T ss_pred ccCchHHHHHHHHHHHHHHHHHcCC-cEEEEeC
Confidence 222221 13444455555555432 6677765
No 178
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.27 E-value=1.9e-06 Score=64.41 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
.++-|.|+|+||+||||++..+++.|...|+++.-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG 38 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG 38 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee
Confidence 46779999999999999999999999999998854
No 179
>PLN02165 adenylate isopentenyltransferase
Probab=98.25 E-value=1e-06 Score=73.96 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=29.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
.++.+|+|.||+||||||++..|++.++...++++
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 34679999999999999999999999886555654
No 180
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.24 E-value=2.4e-06 Score=65.41 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=35.8
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
|+. +.+.++.|.|++||||||+++.|...+...++.+..+..
T Consensus 1 ~~~--~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 1 MNK--TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CCC--CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 555 456789999999999999999999999988988877653
No 181
>PLN02348 phosphoribulokinase
Probab=98.24 E-value=1.3e-05 Score=68.59 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=27.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+++.+|.|.|++||||||+++.|+..|+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 467899999999999999999999999754
No 182
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.23 E-value=1.2e-06 Score=68.97 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|.+|++.|+|||||||+++.+...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 5789999999999999999999999874
No 183
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.23 E-value=3.4e-06 Score=68.36 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
+.+.+|.+.|++|+||||++..|...+...+-+
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 457899999999999999999999999866444
No 184
>PHA00729 NTP-binding motif containing protein
Probab=98.19 E-value=1.4e-05 Score=63.57 Aligned_cols=27 Identities=33% Similarity=0.135 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
....|+|+|+||+||||+|..|++.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999876
No 185
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.19 E-value=1.7e-06 Score=67.74 Aligned_cols=29 Identities=52% Similarity=0.655 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
+|.|.|++||||||+++.|+..|+..+++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 68999999999999999999999988877
No 186
>KOG0707|consensus
Probab=98.19 E-value=4.7e-05 Score=60.22 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPD 46 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~ 46 (227)
+-|+++||+|+||+|+.++|.+.++. -+++|-+ ++.|.
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr 77 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPR 77 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCC
Confidence 56999999999999999999999986 3555544 44443
No 187
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.16 E-value=5.2e-05 Score=60.42 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..+|++.|.||.|||+++..|...|.|.|+++..+.
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn 47 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFN 47 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceee
Confidence 457999999999999999999999999999998876
No 188
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.10 E-value=4.9e-06 Score=64.34 Aligned_cols=34 Identities=38% Similarity=0.421 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|.|.|++||||||+++.|++.+...+.++..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5899999999999999999999987777665543
No 189
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.09 E-value=9.5e-06 Score=72.71 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+.+|.|.|++||||||+++.|+..+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 457899999999999999999998764
No 190
>PRK07429 phosphoribulokinase; Provisional
Probab=98.05 E-value=6.1e-06 Score=69.65 Aligned_cols=36 Identities=31% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
|+.+..++.+|.|.|++||||||+++.|+..++...
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 666667788999999999999999999999987544
No 191
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.05 E-value=7.8e-06 Score=65.97 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=33.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC-C---C-CCCCchHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF-P---D-RTISTGHIID 56 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~-~---~-~~~~~~~~~~ 56 (227)
.+..+|.|+|+||+||||+...|.+.+...+..|..+.- | . .+.-+|+.++
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiR 82 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIR 82 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGG
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHH
Confidence 356789999999999999999999999999999866332 2 2 2445566554
No 192
>PHA03133 thymidine kinase; Provisional
Probab=98.05 E-value=0.00018 Score=60.64 Aligned_cols=173 Identities=16% Similarity=0.120 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCC--Cc-hHHHHHHHhh-----cCCCCHHHH------HHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTI--ST-GHIIDEYLRK-----KIELPDQAA------HLLF 74 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-----~~~~~~~~~------~~~~ 74 (227)
..|+|+|+.|.||||.++.+...++... ++.++.||-... -+ .+.+..++.. .+++..... .+.-
T Consensus 41 ~rvYlDG~~GvGKTTt~~~l~~a~~~~~-~vl~~pEPM~YWr~~f~sd~i~~IY~tq~r~~~GeiS~~~A~~~~~s~Q~k 119 (368)
T PHA03133 41 LRIYVDGPHGLGKTTTAAALAAALGRRD-DIEYVPEPMAYWQVLGGSETIARIFDAQHRLDRGEISAGEAAVAMTSAQVT 119 (368)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHhhCCCC-CeEEecCcHHHHHHHhhhhHHHHHHHHHHHHhccCcchhhhhhHHHHHHHH
Confidence 3699999999999999988888776543 366677763210 11 1333444332 122222221 1222
Q ss_pred Hhhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchh---hhhhhccC-CCChhhhhcccCCC---CCC
Q psy16874 75 SANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSG---VAFSAAKE-GMDISWCFQPEKGL---PKP 146 (227)
Q Consensus 75 ~~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~---~~~~~~~~-~~~~~~~~~~~~~~---~~p 146 (227)
++..+... ..+.+.+..+... .....+....-+|+||+..+. ||...+.. .+..+.+..+...+ +.=
T Consensus 120 FatPy~~~~~~~~~~~g~~~~~-----~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~ls~~~lislla~lp~~~pG 194 (368)
T PHA03133 120 MSTPYAVTEAAVAPHIGGELPP-----GHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSLSLPAVLSFAALLPPTTPG 194 (368)
T ss_pred hcChHHHHHHHHHHHhccCCCC-----CCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCCCHHHHHHHHHhCCCCCCC
Confidence 22222222 2333232211000 000000012235679998765 34333322 34445444443333 233
Q ss_pred CEEEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHHHHHh
Q psy16874 147 DAVLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENYEKLK 187 (227)
Q Consensus 147 d~vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~ 187 (227)
+-+|.++.+.++..+|+.+|.+..|. ..++..++..|.-+.
T Consensus 195 ~NiVl~~L~~~E~~~RL~~R~R~gE~~D~~~l~alrnvY~~l~ 237 (368)
T PHA03133 195 TNLVLGALPEAAHAERLAQRQRPGERLDLAMLSAIRRVYDMLG 237 (368)
T ss_pred CEEEEEeCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence 67999999999999999887655553 567777777665553
No 193
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.03 E-value=2.4e-05 Score=64.53 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNI 37 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~ 37 (227)
+|.|.|++||||||+++.|+..++..+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~ 28 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV 28 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCce
Confidence 4889999999999999999998875543
No 194
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.01 E-value=0.00017 Score=58.06 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=37.1
Q ss_pred EEEEeecCHHHHHHhcCC--CCCCccc-HHHHHHHH------HHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 148 AVLLFKLNEEALQRRKGF--GDERYEQ-TDFQRKVA------ENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 148 ~vi~L~~~~e~~~~R~~~--r~~~~~~-~~~~~~~~------~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
-++||+++.+++.+|... |...... ...++.+. .-....+. ++||++ .++-+..+.|...+.
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~---~vIDTs~ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIAD---LVIDTSELSVHELRERIRTRFL 156 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhh---hEeecccCCHHHHHHHHHHHHc
Confidence 499999999999999864 2222321 11222332 22233333 788977 788776666655554
No 195
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.98 E-value=2.8e-05 Score=57.91 Aligned_cols=168 Identities=13% Similarity=0.146 Sum_probs=88.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHHHHHHh--CCCCeEEeeC--CCCCCCchHHHHHH-Hhh-----cCCC---CHHH
Q psy16874 3 SQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNK--NNIPSQFVNF--PDRTISTGHIIDEY-LRK-----KIEL---PDQA 69 (227)
Q Consensus 3 ~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~--~~~~~~~~~~--~~~~~~~~~~~~~~-~~~-----~~~~---~~~~ 69 (227)
..++++++|++.|.+-||||+++..+-..... .++-++.+-+ |......+ .-| +.. +..+ ....
T Consensus 18 ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a---~g~~~~~~v~~dg~~~v~v~~gp 94 (205)
T COG3896 18 AGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLA---RGYTWDSAVEADGLEWVTVHPGP 94 (205)
T ss_pred cCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccc---cccccccccccCCceeeEeechh
Confidence 35678999999999999999999999886653 3444333222 11000000 000 000 0000 0000
Q ss_pred HHHHHHhhhhhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc-CCCCCCCE
Q psy16874 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE-KGLPKPDA 148 (227)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pd~ 148 (227)
..-.-...+ ...|......|..++. |-+... ..|+-.-. .....+..
T Consensus 95 i~e~~~~~~---r~ai~a~ad~G~~~i~-----------------Ddv~~~------------r~~L~Dc~r~l~g~~v~ 142 (205)
T COG3896 95 ILELAMHSR---RRAIRAYADNGMNVIA-----------------DDVIWT------------REWLVDCLRVLEGCRVW 142 (205)
T ss_pred HHHHHHHHH---HHHHHHHhccCcceee-----------------hhcccc------------hhhHHHHHHHHhCCceE
Confidence 000001111 1234444567777777 744332 12331111 11224557
Q ss_pred EEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHHHHHhhC--CeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 149 VLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENYEKLKDN--IWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 149 vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~~--~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
.+-+.||.|++.+|-..|+++.-. ... |+..... .-+.+|++ .+|.|.+..|.+.++
T Consensus 143 ~VGV~~p~E~~~~Re~rr~dR~pG~~rg~-------~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 143 MVGVHVPDEEGARRELRRGDRHPGWNRGS-------ARAVHADAEYDLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred EEEeeccHHHHHHHHhhcCCcCcchhhhh-------HHHhcCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence 899999999999988766554321 221 2222121 34788888 668899988887653
No 196
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.96 E-value=1.2e-05 Score=66.00 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=40.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC-C---C-CCCCchHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF-P---D-RTISTGHIIDE 57 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~-~---~-~~~~~~~~~~~ 57 (227)
.++.+|.|+|+|||||||+...|..+|...|+.|..+.- | . .+.-+|..++.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM 105 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRM 105 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhH
Confidence 356789999999999999999999999999998865321 2 2 24455666653
No 197
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.91 E-value=1.7e-05 Score=61.33 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
+|.|.|..|||++|+++.|++.|+...++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCC
Confidence 68999999999999999999999876554
No 198
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.90 E-value=2.5e-05 Score=59.17 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++|.|+|.+||||||+++.|...+...|+++..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 479999999999999999999999988988877653
No 199
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.90 E-value=0.00014 Score=63.77 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=33.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|.+|.++|++||||||.+..|+..+...+.++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 5789999999999999999999999998888887654
No 200
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.89 E-value=2.4e-05 Score=66.07 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=33.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++.+|.|+|+|||||||+++.|...+...+.++..+.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45779999999999999999999999998888887644
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.88 E-value=1.6e-05 Score=57.58 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
+..+.|.|++||||||++..|+..+...+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~ 35 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY 35 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEE
Confidence 4579999999999999999999999876544443
No 202
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.86 E-value=2.4e-05 Score=59.17 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++++.|+|..+|||||+++.|...|..+|+.+..+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 5789999999999999999999999999999977554
No 203
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.85 E-value=3.2e-05 Score=57.37 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
++|.|+|+.+|||||+++.|...+..+|+.+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 4689999999999999999999999999998753
No 204
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.85 E-value=2e-05 Score=59.32 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN 43 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~ 43 (227)
|+=++.+||||||++..|++-++ +-|+..+.+.
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~ 35 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT 35 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC
Confidence 45578999999999999999999 7676655543
No 205
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.85 E-value=2.5e-05 Score=58.98 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|+|.|++||||||+++.|...+...|+++..+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4789999999999999999999998899987765
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.82 E-value=6.3e-05 Score=59.01 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
|.+|++.||.|+||||.+.+|+.++...+.++..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 678999999999999999999999998888876644
No 207
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.80 E-value=1.6e-05 Score=57.55 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
|+|.|+||+||||+++.+++.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999985
No 208
>PLN02796 D-glycerate 3-kinase
Probab=97.79 E-value=3.6e-05 Score=64.98 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
++|.+|.|.|++||||||+++.|...+...+.++..+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~I 134 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASL 134 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEE
Confidence 3578899999999999999999999997666555443
No 209
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.78 E-value=3.4e-05 Score=58.99 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
|.|+|.||+||||+++.+.+.+...++++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~ 31 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG 31 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence 889999999999999999999987777763
No 210
>PRK09169 hypothetical protein; Validated
Probab=97.76 E-value=0.0001 Score=73.81 Aligned_cols=139 Identities=14% Similarity=-0.020 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
...|+++|.+|+||||+++.|++.++...++.+..-+. ..+..|.+++...+ .....+. ..+..
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek----s~GrkI~rIFa~eG-~FRe~Ea-----------a~V~D 2173 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAK----KIGKKIARIQALRG-LSPEQAA-----------ARVRD 2173 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHH----HhCCCHHHHHHhcC-chHHHHH-----------HHHHH
Confidence 34699999999999999999999998877665431111 11333444444333 3333333 45555
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
.+. ...|+. .++|.+... .....+ .. -.++|||..+.+++.+|+..+.
T Consensus 2174 llr-~~vVLS----------TGGGav~~~--------------enr~~L---~~----~GlvV~L~an~~tl~~Rty~g~ 2221 (2316)
T PRK09169 2174 ALR-WEVVLP----------AEGFGAAVE--------------QARQAL---GA----KGLRVMRINNGFAAPDTTYAGL 2221 (2316)
T ss_pred Hhc-CCeEEe----------CCCCcccCH--------------HHHHHH---HH----CCEEEEEECCHHHHHHHhccCC
Confidence 553 444443 455555550 001222 22 2379999999999999997532
Q ss_pred C--------C-cc-------cHHHHHHHHHHHHHHhhCCeEEEcCC
Q psy16874 168 E--------R-YE-------QTDFQRKVAENYEKLKDNIWIDIDAD 197 (227)
Q Consensus 168 ~--------~-~~-------~~~~~~~~~~~~~~~~~~~~~~Id~~ 197 (227)
+ . +| ..+.++..+..|+++.. +.|+..
T Consensus 2222 NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvAD---l~V~~~ 2264 (2316)
T PRK09169 2222 NVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQD---LEVAPA 2264 (2316)
T ss_pred CCccccCCCCccchhccHHHHHHHHHHhHHHHHHhcC---cccccC
Confidence 1 1 11 12344455667777755 566644
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=97.75 E-value=8.6e-05 Score=62.91 Aligned_cols=37 Identities=38% Similarity=0.549 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|.+|+|+|++||||||.+..|+..+...+.++..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4789999999999999999999999988888876643
No 212
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.75 E-value=0.00021 Score=66.16 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=34.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
...+|++.|.||+||||+++.|++.+++.++++..+..
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~ 251 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIH 251 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEcc
Confidence 34589999999999999999999999999999887663
No 213
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.75 E-value=2.9e-05 Score=65.91 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.++++|.|||||||||+++.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999999976
No 214
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.74 E-value=4.9e-05 Score=65.47 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=34.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
.+|.+|+|+|.+||||||+++.|.+.|... ++|..++.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~ 40 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH 40 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence 478999999999999999999999999988 88877653
No 215
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.73 E-value=0.0001 Score=56.43 Aligned_cols=34 Identities=38% Similarity=0.461 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++++|++||||||++..++..+...+.++..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5889999999999999999999988888876655
No 216
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.73 E-value=3.4e-05 Score=56.48 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=26.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+.+.+|++.|..||||||+++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 457799999999999999999999998753
No 217
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.71 E-value=2.4e-05 Score=65.47 Aligned_cols=35 Identities=34% Similarity=0.348 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
.+++|+|+||+||||||++..|++.++...++++.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 46799999999999999999999998765555543
No 218
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.71 E-value=7.3e-05 Score=61.65 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=32.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++.+|.|+|++|+||||.+..|+..+...+.++..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45688999999999999999999999988888886654
No 219
>KOG0744|consensus
Probab=97.71 E-value=3e-05 Score=64.25 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
-++|.+.||||.||||+|+.|+++|-.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4689999999999999999999998654
No 220
>PLN02840 tRNA dimethylallyltransferase
Probab=97.69 E-value=3.2e-05 Score=66.98 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS 39 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~ 39 (227)
+++++|+|.||+||||||++..|++.++...+++
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~ 52 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISA 52 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEec
Confidence 4567899999999999999999999998655544
No 221
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.68 E-value=7.6e-05 Score=64.47 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++|.+|.|.|+.||||||+++.|...+...+..+..+.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvIS 247 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLS 247 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 36789999999999999999999988876666655443
No 222
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.68 E-value=8.5e-05 Score=62.60 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+|.+|.|+||+||||||++..|+..+...+.+|..+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35789999999999999999999999988888876654
No 223
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.67 E-value=4.3e-05 Score=61.79 Aligned_cols=31 Identities=39% Similarity=0.410 Sum_probs=25.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 13 FEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 13 i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
|.||+||||||+|..+.+++...+.++..+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vN 31 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVN 31 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEE
Confidence 6899999999999999999998888876644
No 224
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.0001 Score=53.81 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+..+.|.|++|+||||+++.+.+.+...+.++..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 3567999999999999999999999875555555544
No 225
>KOG0780|consensus
Probab=97.66 E-value=0.00018 Score=60.99 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=33.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+|-+|.|.|.-||||||.|..|+.++...|+++..+.
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence 35779999999999999999999999999999986644
No 226
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.64 E-value=9.7e-05 Score=61.83 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..+.+|.|+|++||||||++..|...+...+.++..+.
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45788999999999999999999999988888886644
No 227
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.64 E-value=9.9e-05 Score=59.12 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++|.|+|++||||||++..|...|...|+++..+.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47999999999999999999999999999998765
No 228
>PRK13768 GTPase; Provisional
Probab=97.64 E-value=9.8e-05 Score=60.29 Aligned_cols=36 Identities=36% Similarity=0.472 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++|+|.|++||||||++..++..+...|.++..+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 468999999999999999999999988888876643
No 229
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.63 E-value=4.8e-05 Score=60.59 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.||+||||||+.+.|.--..
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4677999999999999999988887443
No 230
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.62 E-value=4.8e-05 Score=58.29 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|.|+|++||||||+|..|+..++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC
Confidence 5799999999999999999998764
No 231
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.62 E-value=0.00011 Score=60.65 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++|.|+|.+||||||++..|...|...| .|..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 4799999999999999999999999998 7766554
No 232
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.62 E-value=4.5e-05 Score=59.88 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..+|-+++|+||+||||||+.+-|..
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 35688999999999999999865543
No 233
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.60 E-value=0.00013 Score=63.56 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|.+|.++|++||||||.+..|+..+...|.+|..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4689999999999999999999999988888876644
No 234
>PRK12377 putative replication protein; Provisional
Probab=97.59 E-value=0.0016 Score=52.99 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..++|.|++|+|||+++..++..+...+++|..+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 46899999999999999999999998898887665
No 235
>PF13245 AAA_19: Part of AAA domain
Probab=97.58 E-value=9.2e-05 Score=48.87 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHH-HHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKT-TQAKKLVDYL 32 (227)
Q Consensus 8 ~~~I~i~G~~GsGKS-T~~~~L~~~l 32 (227)
..+.+|.|+|||||| |+++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 556888999999999 5555555555
No 236
>PF05729 NACHT: NACHT domain
Probab=97.55 E-value=9.2e-05 Score=55.68 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
++++|.|.+|+||||++..++..+...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 4689999999999999999999887765
No 237
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.54 E-value=0.00014 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+.+.+|.|+.||||||+...+.-.|
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4479999999999999998887655
No 238
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=6.6e-05 Score=60.20 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+|-+++|.||+||||||+.+.++--...
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56789999999999999999999975544
No 239
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.54 E-value=0.00015 Score=60.09 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN-N-IPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~-~~~~~~~ 43 (227)
++.+|+|.||.||||||++..|+..+... + .+|..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 57799999999999999999999999765 4 7776655
No 240
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.54 E-value=0.00012 Score=60.00 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
.+..++|.||||+||||+++.+++.+...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 345789999999999999999999885443
No 241
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.53 E-value=0.00015 Score=62.38 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++++|.|+|.+||||||+++.|...|...|+++..+..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 45689999999999999999999999999999877653
No 242
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.52 E-value=7.7e-05 Score=56.49 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-.|.|+||+||||||+.+.++.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 457789999999999999999998744
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.52 E-value=9e-05 Score=53.72 Aligned_cols=39 Identities=36% Similarity=0.457 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC-----CCCeEEeeCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN-----NIPSQFVNFP 45 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~-----~~~~~~~~~~ 45 (227)
+..+++|.|++|+||||+++.+.+.+... ..++..+..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP 46 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence 46789999999999999999999988653 4444444433
No 244
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.51 E-value=0.00018 Score=51.97 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
++++|.++++-|++|+|||-+++.|++.+=..|..+..
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~ 86 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPF 86 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCc
Confidence 45788899999999999999999999998766766543
No 245
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.51 E-value=0.00017 Score=62.40 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
|..|++.||||+||||+++.|++.++..++.++.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 5679999999999999999999999877766653
No 246
>PRK13695 putative NTPase; Provisional
Probab=97.50 E-value=0.00018 Score=55.19 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS 39 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~ 39 (227)
|.|+|+|++||||||+++.+...+...|+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 4699999999999999999998876656664
No 247
>PRK10867 signal recognition particle protein; Provisional
Probab=97.49 E-value=0.00035 Score=61.16 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 43 (227)
.+|.+|.++|++||||||.+..|+..+... |.+|..+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 347899999999999999999999999887 88876644
No 248
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.49 E-value=0.00019 Score=48.73 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|++.|..|+||||++..|+..+...+.++..++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 3789999999999999999999988888875544
No 249
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.49 E-value=0.00011 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLV 29 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~ 29 (227)
..+.+++|.|++||||||+++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 346789999999999999998876
No 250
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.49 E-value=0.00016 Score=54.05 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+++|.|++|+||||++..++......+.++..+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 37899999999999999999998877777776553
No 251
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.48 E-value=0.00023 Score=54.98 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCc-eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 6 PRG-AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 6 ~~~-~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
+++ ..|.|.|||||||||+.+.+.+.|... +++..+
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI 46 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVI 46 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEE
Confidence 456 679999999999999999999999776 565443
No 252
>KOG1384|consensus
Probab=97.47 E-value=0.00051 Score=57.09 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
+-++|+|.|+.|||||-|+--||.+++..-|+.+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk 40 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK 40 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence 45789999999999999999999998876666543
No 253
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.47 E-value=0.00018 Score=62.44 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++|.|+|..||||||+++.|...|...|++|..++.
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 479999999999999999999999999999987664
No 254
>PRK04296 thymidine kinase; Provisional
Probab=97.47 E-value=0.00021 Score=55.78 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
+.+++++|++||||||++-.++..+...+..+..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 67899999999999999999999988778777765
No 255
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.47 E-value=0.00026 Score=55.82 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+++.++.|.|+|||||||++-.++......+.++.++..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 467899999999999999999999887777778877653
No 256
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0021 Score=55.57 Aligned_cols=38 Identities=37% Similarity=0.448 Sum_probs=33.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++|.+|.+.|.=||||||-|..|+.+|...+.++..+.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVa 135 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVA 135 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEe
Confidence 45789999999999999999999999999999886644
No 257
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.47 E-value=0.0002 Score=56.26 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+|+|.||+||||||++..|...+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 68999999999999999988888643
No 258
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.45 E-value=0.00021 Score=61.84 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=31.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD 46 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~ 46 (227)
|.|.|+||+||||++..|++.+...|-=|..+..|.
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPR 301 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPR 301 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCcc
Confidence 789999999999999999999999887666677674
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00025 Score=61.08 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++.+|+|.|+.||||||.+..|+..+...+.++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4678999999999999999999999988888887655
No 260
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.44 E-value=0.00015 Score=52.43 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+.+.+|.+.|.-||||||+++.+++.++..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 467899999999999999999999988653
No 261
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.44 E-value=9.4e-05 Score=58.73 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..++|.||||.||||++..+++.++.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~ 76 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGV 76 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT-
T ss_pred ceEEEECCCccchhHHHHHHHhccCC
Confidence 46899999999999999999998875
No 262
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.44 E-value=0.00029 Score=56.00 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=33.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.++.|.|+|||||||++-.++......+.++.++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45789999999999999999999998877787887765
No 263
>CHL00181 cbbX CbbX; Provisional
Probab=97.44 E-value=0.0002 Score=59.60 Aligned_cols=31 Identities=39% Similarity=0.490 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~ 37 (227)
.+..++|.|+||+||||+++.+++.+...|+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4567999999999999999999998865544
No 264
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.44 E-value=0.00022 Score=61.74 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
|..|+++||+|+||||+++.|++.++...+.++.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 5679999999999999999999999876666643
No 265
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.43 E-value=0.00013 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
|++.|++|+|||++++.|++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999993
No 266
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=97.43 E-value=0.0057 Score=50.19 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=45.0
Q ss_pred CCCCcccchhh---hhhhcc-CCCChhhhhcccCCCC---CCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHH
Q psy16874 112 CTNDRYSFSGV---AFSAAK-EGMDISWCFQPEKGLP---KPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAEN 182 (227)
Q Consensus 112 ~i~Dr~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~---~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~ 182 (227)
+|+||+..+.. |..... ..+..+.+..+...++ .-+.+|.++.+.++..+|+.+|.+..| +..++..++..
T Consensus 105 ~ifDRHplAA~vcFPlary~~G~ls~~~li~lla~~p~~~pG~niVl~~L~~~E~~rRl~~R~R~gE~vd~~~l~~Lr~~ 184 (281)
T PF00693_consen 105 LIFDRHPLAATVCFPLARYLLGDLSFEDLISLLATFPPEPPGTNIVLMTLPEEEHLRRLKARGRPGERVDLNYLRALRNV 184 (281)
T ss_dssp EEEES-THHHHTHHHHHHHHTTSS-HHHHHHHHTTS----TTEEEEEEE--HHHHHHHHHHTSTTT-S--HHHHHHHHHH
T ss_pred EEEecchhHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccccCHHHHHHHHHH
Confidence 56799987643 333332 2344455544444332 334588899999999999987755554 47888888887
Q ss_pred HHHHh
Q psy16874 183 YEKLK 187 (227)
Q Consensus 183 ~~~~~ 187 (227)
|.-+.
T Consensus 185 Y~~l~ 189 (281)
T PF00693_consen 185 YHALV 189 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.42 E-value=0.00013 Score=51.48 Aligned_cols=24 Identities=42% Similarity=0.344 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
|+|.|++|+|||++++.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998874
No 268
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.42 E-value=0.00024 Score=53.20 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=29.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
|.++|++||||||++..++..+...+.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLA 34 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 789999999999999999999988888876533
No 269
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.40 E-value=0.00033 Score=55.83 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+..++|.|++|+||||++..+++.....+.++..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4567999999999999999999998876666665544
No 270
>PRK09183 transposase/IS protein; Provisional
Probab=97.39 E-value=0.00028 Score=57.76 Aligned_cols=37 Identities=30% Similarity=0.244 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++..++|.|++|+|||+++..|+......|.++..+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567889999999999999999988777788876654
No 271
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.39 E-value=0.00017 Score=55.35 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
..+.+++|.|++|+||||+++.+.+.+...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 457899999999999999999999988775
No 272
>PRK06851 hypothetical protein; Provisional
Probab=97.37 E-value=0.00043 Score=59.24 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
.++++|.|+||+||||+++.|.+.+...|+++..
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~ 63 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEF 63 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4689999999999999999999999887887654
No 273
>PLN02748 tRNA dimethylallyltransferase
Probab=97.37 E-value=0.00012 Score=64.46 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
+++.+|+|.||+||||||++..|++.++...++++
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~D 54 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINAD 54 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence 35679999999999999999999999986666654
No 274
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.36 E-value=0.00017 Score=55.65 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+++-++.++|++||||||+.++|-.....
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 356778999999999999999999876544
No 275
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.36 E-value=0.00014 Score=61.08 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
++.|.|+|+||+||||+++.|++.++...+.+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~ 96 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVN 96 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 345999999999999999999999988666543
No 276
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.34 E-value=0.00017 Score=57.28 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
|+|.|+|.+||||||+++.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 58999999999999999888664
No 277
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.34 E-value=0.00043 Score=55.86 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+..++|.||+|+|||+++..++..+...+.++.++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457899999999999999999998887777776644
No 278
>KOG1532|consensus
Probab=97.33 E-value=0.0029 Score=51.59 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
.+|.+|++.|+.||||||++.+|..++....-+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 568899999999999999999999999776543
No 279
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.00018 Score=60.67 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.||+||||||+.+.+|--..
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999986443
No 280
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.00063 Score=59.08 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~ 43 (227)
++.+|+|.|++||||||++..|+..+. ..|.++..+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 467899999999999999999998763 4566665533
No 281
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.32 E-value=0.00023 Score=56.02 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
|..|.|.|++||||||+++.+...+..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 567999999999999999999988764
No 282
>PF13173 AAA_14: AAA domain
Probab=97.32 E-value=0.00027 Score=51.42 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++++|.|+.|+||||+++.+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999998775
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.31 E-value=0.00046 Score=54.15 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..+++|.|++|+||||++..+.+.+...+..+..+.
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 467899999999999999999999999887776654
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.00086 Score=57.52 Aligned_cols=38 Identities=32% Similarity=0.248 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++.+|+|.||.||||||++..|+..+...+.++..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35789999999999999999999998877787876654
No 285
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.30 E-value=0.00015 Score=53.04 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+++-+++|.|+.||||||+.+.|+..+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred cCCCEEEEEccCCCccccceeeecccccc
Confidence 45778999999999999999988876654
No 286
>PRK06851 hypothetical protein; Provisional
Probab=97.30 E-value=0.00045 Score=59.09 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
.++++|.|+||+||||+++.+++.+..+|+.+...+-|
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46799999999999999999999999999999887654
No 287
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.29 E-value=0.00014 Score=59.07 Aligned_cols=30 Identities=37% Similarity=0.478 Sum_probs=26.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+++.+++|.||.||||||+.+.|+..+..
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 356889999999999999999999987764
No 288
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.29 E-value=0.00023 Score=54.65 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=23.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+.+-+++|.|++||||||+.+.++--
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhc
Confidence 356778999999999999999999873
No 289
>COG4240 Predicted kinase [General function prediction only]
Probab=97.29 E-value=0.00049 Score=54.56 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCC-CeEEee
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI-PSQFVN 43 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~-~~~~~~ 43 (227)
..+|.++.|+||-||||||++..|-..|...|. ++..+.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS 86 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS 86 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee
Confidence 356889999999999999999999999988874 555433
No 290
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.28 E-value=0.00055 Score=59.90 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~ 43 (227)
+|.+|.+.|++||||||.+..|+..+. ..|.++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 477999999999999999999999986 4677776544
No 291
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.26 E-value=0.00065 Score=54.28 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=33.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+++.++.|.|+|||||||++..++...-..+.++.++..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 457899999999999999999999887667778877653
No 292
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.26 E-value=0.00066 Score=48.62 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=29.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
|++.|.+|+||||++..|+..+...+.++..+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 889999999999999999999988888886655
No 293
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.25 E-value=0.00015 Score=60.13 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
+|+|.||+|||||+++..|++.++...++++
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~D 31 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVD 31 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEec
Confidence 4899999999999999999999876656653
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.24 E-value=0.00028 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLV 29 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~ 29 (227)
+++-+++|.|+.||||||+.+.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999998874
No 295
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.24 E-value=0.00024 Score=55.21 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+..++|.|++||||||+.+.|...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 467899999999999999999988765
No 296
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.24 E-value=0.00029 Score=54.80 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999886543
No 297
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.24 E-value=0.0006 Score=55.87 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++.++.|.|+||+||||+|-.++...-..|-++.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5678999999999999999998877655687886644
No 298
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.24 E-value=0.00069 Score=52.31 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++.-++|.|++|+|||.++..++..+-..|++|.++.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 4567999999999999999999998888999988876
No 299
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.24 E-value=0.00028 Score=55.98 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999997654
No 300
>PRK06893 DNA replication initiation factor; Validated
Probab=97.24 E-value=0.00057 Score=54.91 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+.++|.|++|+|||+++..++..+...+.++.++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 46899999999999999999999877777776544
No 301
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.22 E-value=0.0013 Score=50.28 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++.|+|++||||||++..++.. .+.++.++.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 4789999999999999999876 344565543
No 302
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.22 E-value=0.00027 Score=57.86 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.+++|.|++||||||+++.+...+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999988764
No 303
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.22 E-value=0.0003 Score=55.66 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577899999999999999999987653
No 304
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.22 E-value=0.00071 Score=54.12 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+..++|.|++|+|||+++..++......+.++..+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 457899999999999999999998877777766654
No 305
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00027 Score=59.97 Aligned_cols=26 Identities=27% Similarity=0.545 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+|-++++.||+||||||+.+.|+--
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999863
No 306
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.22 E-value=0.00029 Score=50.14 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~ 30 (227)
|+|.|.+||||||+.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 307
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.21 E-value=0.00016 Score=52.37 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.++|+||.||||+++.|++.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 789999999999999999998765
No 308
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.21 E-value=0.00031 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
++.++|.|++|+||||+++.|...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999988764
No 309
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.21 E-value=0.00033 Score=55.38 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999999987654
No 310
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.21 E-value=0.00059 Score=52.61 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++|.|+||+||||++..++...-..|.++.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999887767788887754
No 311
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.21 E-value=0.00051 Score=56.49 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
.+..|+|+|++||||||+.+.|...++.....+..+..+
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~ 164 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDP 164 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESS
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccc
Confidence 367899999999999999999999888764455555544
No 312
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.21 E-value=0.00032 Score=55.74 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4577899999999999999999987654
No 313
>PRK06526 transposase; Provisional
Probab=97.21 E-value=0.00042 Score=56.55 Aligned_cols=34 Identities=26% Similarity=0.143 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
+..++|.||+|+|||+++..|+..+...|+++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4579999999999999999999988777777644
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.20 E-value=0.00032 Score=54.09 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++-+++|.|+.||||||+.+.|+..+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4577999999999999999999987654
No 315
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.20 E-value=0.00032 Score=62.87 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
...+.+++||+||||||.++.|++.++.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999999865
No 316
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.20 E-value=0.00065 Score=62.02 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
..++|.|+|.+||||||+++.|...|..+|++|..++.
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 35689999999999999999999999999999987664
No 317
>PRK13764 ATPase; Provisional
Probab=97.20 E-value=0.00054 Score=62.23 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
...|+|+|++||||||+++.|...+...+..+..+..|
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp 294 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESP 294 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 45699999999999999999999998766555444433
No 318
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.20 E-value=0.00065 Score=52.40 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++++|+|..||||||+.+.|.+ ....+.++..+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ 34 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIV 34 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEE
Confidence 4689999999999999999998 666788887754
No 319
>PRK08181 transposase; Validated
Probab=97.20 E-value=0.0013 Score=54.04 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+..++|.|++|+|||.++..++..+...|.+|..+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 456999999999999999999998888888887655
No 320
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.19 E-value=0.00048 Score=54.43 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
+.+++|+|.|+.||||||+.+.+.+.+.. +..+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v 54 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAV 54 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEE
Confidence 35778999999999999999999988764 335444
No 321
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.19 E-value=0.00034 Score=55.40 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-++.|.|+.||||||+++.|+..+.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999987653
No 322
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.19 E-value=0.00033 Score=62.87 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+.+++++.||||+||||+++.|++.+...
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 45799999999999999999999988764
No 323
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00036 Score=55.12 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457789999999999999999999754
No 324
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00036 Score=56.17 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677999999999999999999987553
No 325
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.17 E-value=0.00037 Score=55.45 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999997554
No 326
>KOG1533|consensus
Probab=97.17 E-value=0.00034 Score=55.56 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
-+|+|||||||||-|....+-+...|=++..+.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVN 37 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVN 37 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEe
Confidence 578999999999999999999988877766544
No 327
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.17 E-value=0.00036 Score=54.93 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999999987543
No 328
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.17 E-value=0.00046 Score=57.08 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
....+|.|.|+|||||||+++.|...+... ..+..+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEE
Confidence 356789999999999999999999988654 244443
No 329
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.17 E-value=0.00039 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~ 31 (227)
|+|.|.+||||||+++.|...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999988864
No 330
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.17 E-value=0.00038 Score=55.43 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987654
No 331
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.00039 Score=55.04 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987554
No 332
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.00037 Score=55.52 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987543
No 333
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.15 E-value=0.0004 Score=55.29 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999999987554
No 334
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.15 E-value=0.00044 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|++.|++||||||+++.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 45699999999999999999864
No 335
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.15 E-value=0.00039 Score=54.69 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.|+.||||||+++.|+-.+.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577899999999999999999987654
No 336
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00036 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++ +++|.|+.||||||+++.|+..+.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 46 899999999999999999987543
No 337
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.15 E-value=0.00041 Score=54.90 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999997654
No 338
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.15 E-value=0.00041 Score=55.52 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457799999999999999999999876
No 339
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.15 E-value=0.00036 Score=55.25 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467799999999999999999998754
No 340
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.15 E-value=0.00041 Score=54.88 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999987554
No 341
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00028 Score=64.20 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS 39 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~ 39 (227)
.+|.++++.||||+|||++++.+|+.++...+..
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 4688999999999999999999999999866544
No 342
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.14 E-value=0.00039 Score=55.55 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|+.||||||+++.|+..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677999999999999999999987653
No 343
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.14 E-value=0.00038 Score=56.02 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4577899999999999999999987553
No 344
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.14 E-value=0.00037 Score=57.12 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKL 28 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L 28 (227)
.|.+.+++|+|++||||||++..+
T Consensus 18 ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 18 IPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred ccCCcEEEEECCCCCchHHHHHHH
Confidence 366889999999999999999754
No 345
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.14 E-value=0.002 Score=54.08 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=34.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
.+.-++|.|++|+|||.++..++..+...|++|..+..|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 345699999999999999999999999889998877643
No 346
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.14 E-value=0.00069 Score=55.67 Aligned_cols=38 Identities=29% Similarity=0.239 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
..+|+|.|++||||||+...+...+...+..+..+..|
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp 117 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDP 117 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCC
Confidence 34799999999999999998888776544445555444
No 347
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.13 E-value=0.00041 Score=56.04 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4577999999999999999999987553
No 348
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.12 E-value=0.00042 Score=51.29 Aligned_cols=21 Identities=43% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~ 30 (227)
-|.|.|++|||||||++.|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999988876
No 349
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00043 Score=55.84 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4577999999999999999999987553
No 350
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00044 Score=55.62 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577899999999999999999987543
No 351
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.12 E-value=0.00044 Score=54.91 Aligned_cols=28 Identities=25% Similarity=0.118 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++-+++|.|+.||||||+.+.|+..+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5678999999999999999999997654
No 352
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00048 Score=53.06 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-++.|.|+.||||||+++.|+..+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999986543
No 353
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.12 E-value=0.0036 Score=51.23 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.+++|.|+||||||+++..........|-+|..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56789999999999999999999988888888887754
No 354
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00047 Score=52.82 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987543
No 355
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.11 E-value=0.00048 Score=52.47 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577899999999999999999987654
No 356
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00046 Score=55.44 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.++-+++|.|+.||||||+++.|+..+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45779999999999999999999986653
No 357
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.11 E-value=0.0028 Score=50.62 Aligned_cols=38 Identities=32% Similarity=0.407 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 43 (227)
+++.+++|+|+||||||+++..+....-.. |-+|.++.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 457789999999999999999877655444 77887755
No 358
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.11 E-value=0.0005 Score=52.68 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++-+++|.|+.||||||+.+.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4577899999999999999999987654
No 359
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.00046 Score=53.84 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.++-++.|.|++||||||+.+.|+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35778999999999999999999853
No 360
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.10 E-value=0.00048 Score=55.04 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|++||||||+++.|+..+.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999999997654
No 361
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.00047 Score=55.66 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987653
No 362
>KOG2004|consensus
Probab=97.10 E-value=0.00028 Score=64.15 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
.+|++++|.||||.|||++++.+|+.|+...+.
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence 468999999999999999999999999876543
No 363
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.10 E-value=0.00049 Score=54.26 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4577899999999999999999987543
No 364
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.10 E-value=0.001 Score=53.59 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 43 (227)
.++.+++|.|+||+||||++..++.++-.. +.++.++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 457799999999999999999998887766 88887755
No 365
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.10 E-value=0.00075 Score=57.81 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++.+|+|+|+.||||||++..|...+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998875
No 366
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.10 E-value=0.0005 Score=52.91 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.|++||||||+++.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4577899999999999999999987543
No 367
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.10 E-value=0.00049 Score=55.07 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++-+++|.|+.||||||+++.|+..+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4577899999999999999999987543
No 368
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.0005 Score=54.76 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3577899999999999999999987543
No 369
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.09 E-value=0.00047 Score=55.70 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+|-+++|.|+.||||||+++.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999875
No 370
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.09 E-value=0.00053 Score=55.73 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
..+-+++|.|+.||||||+++.|+..+.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4578999999999999999999987654
No 371
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.09 E-value=0.00051 Score=53.66 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999999988654
No 372
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.09 E-value=0.00067 Score=56.33 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~ 37 (227)
+.-++|.|+||+||||+++.+++.+...+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 346999999999999999999998876544
No 373
>PRK05973 replicative DNA helicase; Provisional
Probab=97.08 E-value=0.0012 Score=53.33 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.+++|.|.||+||||++-.++...-..|.++.++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45779999999999999999999887766688887644
No 374
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.08 E-value=0.0005 Score=55.11 Aligned_cols=29 Identities=34% Similarity=0.469 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+|-+++|.|+.||||||+++.|+..+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45789999999999999999999976643
No 375
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00051 Score=56.11 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999997654
No 376
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.07 E-value=0.00052 Score=55.26 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4577999999999999999999987553
No 377
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.07 E-value=0.0013 Score=52.96 Aligned_cols=38 Identities=26% Similarity=0.520 Sum_probs=29.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.++.|.|++||||||++..+...+-..+..+.++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45679999999999999998666655545576776654
No 378
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.06 E-value=0.00054 Score=50.95 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++-+++|.|+.||||||+++.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4577899999999999999999987653
No 379
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.06 E-value=0.00041 Score=56.92 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..|.++|++|+||||+++.|++.++.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 456789999999999999999987643
No 380
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.06 E-value=0.00056 Score=54.01 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|+.||||||+++.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999987553
No 381
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.06 E-value=0.00058 Score=52.69 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|++||||||+++.|+..+.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987543
No 382
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.06 E-value=0.0012 Score=53.23 Aligned_cols=35 Identities=34% Similarity=0.335 Sum_probs=27.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
+.+.-++|.|++||||||++..|-..+.... ....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f-~~I~ 45 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKF-DHIF 45 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccC-CEEE
Confidence 3466799999999999999999988776644 4444
No 383
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.00056 Score=54.50 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.|-+|+|.|++||||||+.+.|....+.
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lngl~d~ 56 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDP 56 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCC
Confidence 56778999999999999999888874443
No 384
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.06 E-value=0.00055 Score=54.80 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4577999999999999999999987653
No 385
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.06 E-value=0.00058 Score=57.10 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..++|.||||+||||++..+++.++.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456899999999999999999998864
No 386
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.06 E-value=0.00057 Score=51.92 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987543
No 387
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.06 E-value=0.00053 Score=55.05 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999997654
No 388
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.06 E-value=0.00057 Score=53.63 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999998754
No 389
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.06 E-value=0.00055 Score=55.58 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577899999999999999999987553
No 390
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.00054 Score=55.39 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999997653
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.00066 Score=58.29 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-N-IPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~-~~~~~~ 42 (227)
.++.+|+|.||+|+||||++..|+..+... | ..+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 457799999999999999999999987533 4 355443
No 392
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00055 Score=54.79 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+.|-++.|.|+.||||||+.+.|+..+.
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4577899999999999999999987654
No 393
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.05 E-value=0.00058 Score=53.72 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|++||||||+++.|+..+.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 4678999999999999999999987654
No 394
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00057 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|++||||||+++.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457789999999999999999998754
No 395
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.04 E-value=0.00058 Score=54.33 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.|+.||||||+++.|+..+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4677999999999999999999987543
No 396
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.04 E-value=0.00061 Score=54.51 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|+|++||||||+++.|+..+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 4577899999999999999999997664
No 397
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00052 Score=55.37 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+.+-++++.|++||||||..+++-.-+..
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCC
Confidence 356889999999999999999888876554
No 398
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.04 E-value=0.00059 Score=54.74 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987654
No 399
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00057 Score=54.66 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+|-.+.|.|.+||||||+++.|+-....
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 35778999999999999999999875544
No 400
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.04 E-value=0.00056 Score=55.68 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457789999999999999999999754
No 401
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00059 Score=53.71 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
++..+-+|+||+||||||+.+.|-...+.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmndl 59 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMNDL 59 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhccc
Confidence 55678899999999999999888775543
No 402
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.04 E-value=0.0014 Score=52.85 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.++.|.|+|||||||++..+....-..|-++.++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 46789999999999999999887665435677876644
No 403
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.00054 Score=53.92 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++-+++|.|+.||||||+++.|+..+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4577999999999999999999988654
No 404
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.04 E-value=0.00056 Score=55.69 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|++||||||+++.|+..+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999998654
No 405
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.03 E-value=0.0029 Score=54.21 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
.+|--+.|+|++|+||||++..|++.+...
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 356678999999999999999999988765
No 406
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.03 E-value=0.0006 Score=52.70 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987654
No 407
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0006 Score=55.09 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999999997654
No 408
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00065 Score=51.97 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-++.|.|+.||||||+.+.|+-.+.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4577999999999999999999988654
No 409
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.03 E-value=0.00061 Score=54.21 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|+.||||||+++.|+-.+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4577899999999999999999987543
No 410
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.03 E-value=0.00062 Score=54.08 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3577899999999999999999987554
No 411
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.02 E-value=0.00095 Score=56.95 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEeeCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVNFP 45 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~~~ 45 (227)
+.+|+|+|++||||||++..|...+... ...+..+..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 4679999999999999999998877643 2334444433
No 412
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00061 Score=55.34 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4577899999999999999999997653
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.02 E-value=0.00066 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+.+++|+||.||||||+++.++-..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 35789999999999999999998644
No 414
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.02 E-value=0.00062 Score=55.72 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999999997654
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.01 E-value=0.016 Score=49.99 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH--hCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN--KNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~--~~~~~~~~~~ 43 (227)
++++|++.||.|+||||-...||.++. ....+|..+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 378999999999999999999999887 3455565543
No 416
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00061 Score=55.74 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4577899999999999999999997653
No 417
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00062 Score=55.39 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|++||||||+++.|+..+.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4577999999999999999999998654
No 418
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.01 E-value=0.00065 Score=54.58 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999999987654
No 419
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.01 E-value=0.005 Score=54.30 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
-+|.|+||.||||||..-.+-+.++....++..+..|
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP 295 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP 295 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC
Confidence 4699999999999999999888888777666555544
No 420
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.00065 Score=54.58 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-++.|.|+.||||||+++.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4577899999999999999999987664
No 421
>PRK10908 cell division protein FtsE; Provisional
Probab=97.01 E-value=0.00066 Score=54.11 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+.+.|+-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999986543
No 422
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.00 E-value=0.00068 Score=53.38 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.++-+++|.|+.||||||+.+.|+..+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46779999999999999999999876543
No 423
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.00065 Score=55.51 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4577999999999999999999998653
No 424
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.00 E-value=0.0005 Score=59.68 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
.|+-|++.||||+|||++++.++..++..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 35568999999999999999999987654
No 425
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.00 E-value=0.00063 Score=55.59 Aligned_cols=28 Identities=32% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999998654
No 426
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.0006 Score=55.38 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4577899999999999999999997543
No 427
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00066 Score=54.59 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4577999999999999999999987654
No 428
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00068 Score=54.82 Aligned_cols=28 Identities=36% Similarity=0.562 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577899999999999999999987654
No 429
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.00 E-value=0.00066 Score=54.32 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+++-+++|.|+.||||||+++.|+-.+
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457789999999999999999998754
No 430
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.00067 Score=55.46 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|++||||||+++.|+..+.
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4577899999999999999999997654
No 431
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00069 Score=53.56 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999987653
No 432
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.99 E-value=0.00068 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.|+.||||||+++.|+..+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999997653
No 433
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.99 E-value=0.00068 Score=54.60 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.|+.||||||+++.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4577999999999999999999997654
No 434
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.98 E-value=0.00068 Score=55.16 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|++||||||+++.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987553
No 435
>PRK10646 ADP-binding protein; Provisional
Probab=96.98 E-value=0.0008 Score=50.43 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+.+.+|.+.|.-||||||+++.|++.++..
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 456789999999999999999999999753
No 436
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.98 E-value=0.0007 Score=54.92 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999987653
No 437
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.98 E-value=0.00075 Score=52.83 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999887553
No 438
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.98 E-value=0.00072 Score=55.27 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+|-++.|.|+.||||||+++.|+..+..
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 46779999999999999999999987653
No 439
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.98 E-value=0.0012 Score=55.15 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
...|+|+|++||||||+++.|...+..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 457899999999999999999988754
No 440
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.98 E-value=0.00069 Score=54.57 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-++.|.|+.||||||+++.|+-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4577999999999999999999998654
No 441
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.98 E-value=0.0006 Score=56.82 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=27.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
..+++|+|.||.|||||.++-.|++.. ..-++++
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaD 35 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKGK-AEIINVD 35 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC-CcEEecc
Confidence 345699999999999999999999983 3344443
No 442
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0007 Score=54.36 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
..|-+++|.|+.||||||+++.|+..+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999987654
No 443
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.00072 Score=55.64 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-+++|.|++||||||+++.|+-.+.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3577899999999999999999987654
No 444
>PRK08116 hypothetical protein; Validated
Probab=96.97 E-value=0.0036 Score=51.54 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+.-++|.|++|+|||.++..+++.+...+.++..+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 345899999999999999999999987788876655
No 445
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.0007 Score=55.80 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987543
No 446
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00074 Score=54.75 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.++-+++|+|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457789999999999999999998754
No 447
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.96 E-value=0.0014 Score=57.47 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH--hCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLN--KNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~--~~~~~~~~~~ 43 (227)
+.+|+|.||+|+||||.+..|+..+. ..+.+|..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 56899999999999999999999886 3467777655
No 448
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.96 E-value=0.0017 Score=51.92 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.+++|.|+|||||||++..++...-..+-++.++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 45789999999999999999987765444566666654
No 449
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.96 E-value=0.00058 Score=58.71 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
|+-++|.||||+||||+++.+++.++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 5568999999999999999999987653
No 450
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00075 Score=54.91 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++|-+++|.|+.||||||+++.|+-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457789999999999999999999865
No 451
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00076 Score=54.86 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457789999999999999999998753
No 452
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00077 Score=54.89 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4578999999999999999999997654
No 453
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00077 Score=54.79 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|+.||||||+++.|+-.+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 4577899999999999999999997653
No 454
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.95 E-value=0.0017 Score=54.64 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=31.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.++.|.|++||||||+|-.+.......+-.+.++.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 56789999999999999999988877766677776654
No 455
>PLN03025 replication factor C subunit; Provisional
Probab=96.95 E-value=0.0024 Score=53.86 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
+.++|.||||+||||++..+++.+...+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 3478999999999999999999985443
No 456
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00077 Score=55.42 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457789999999999999999998754
No 457
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=96.95 E-value=0.0018 Score=48.68 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=37.1
Q ss_pred CCCCCCEEEEeecCHHHHHHhcCC----CCCCcccHHHHHHHHH-HHHHHhhC--------CeEEEcCC-CCHHHHHHHH
Q psy16874 142 GLPKPDAVLLFKLNEEALQRRKGF----GDERYEQTDFQRKVAE-NYEKLKDN--------IWIDIDAD-KDIDTLGLIV 207 (227)
Q Consensus 142 ~~~~pd~vi~L~~~~e~~~~R~~~----r~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~Id~~-~s~~~v~~~I 207 (227)
-+|..++.|||++++++..+|-.+ .+....-.+.++.+.. -+.+..+. ..++||++ .++++|.+.|
T Consensus 76 VfPdA~~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~lti~evv~~i 155 (157)
T PF02224_consen 76 VFPDADLKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNLTIEEVVEKI 155 (157)
T ss_dssp CCTT-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS-HHHHHHHH
T ss_pred EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCCCHHHHHHHH
Confidence 356778999999999999887632 1111111223333322 22232221 67889977 9999998887
Q ss_pred HH
Q psy16874 208 KD 209 (227)
Q Consensus 208 ~~ 209 (227)
.+
T Consensus 156 l~ 157 (157)
T PF02224_consen 156 LE 157 (157)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 458
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.00076 Score=54.67 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.||.||||||+.+.+.--+.
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5678999999999999999988877544
No 459
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.95 E-value=0.0017 Score=52.23 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.++.|.|++||||||++..+....-..+-++.++.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 45779999999999999999999765544677776654
No 460
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.95 E-value=0.0015 Score=53.00 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..+++.|++|+|||+++..++..+...+.++..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 36899999999999999999999988888887664
No 461
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00069 Score=55.59 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4577999999999999999999987543
No 462
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.94 E-value=0.00079 Score=54.87 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-++.|.|+.||||||+++.|+..+.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987553
No 463
>KOG1970|consensus
Probab=96.94 E-value=0.00069 Score=59.95 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~ 37 (227)
+..+..|+||+||||||..+.|++.++...+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4568999999999999999999999987544
No 464
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.94 E-value=0.00075 Score=57.19 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..++|.||||+||||+++.+++.++.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 456899999999999999999999865
No 465
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0016 Score=56.26 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh----CCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK----NNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~----~~~~~~~~~ 43 (227)
+|.+|++.|+.|+||||.+..|+..+.. .+.+|..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 4679999999999999999999998864 355665543
No 466
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.0014 Score=54.82 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
++|.+|.|.|+.|+||||-+..|+..|...|.+|...
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla 173 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA 173 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE
Confidence 4588999999999999999999999999999998653
No 467
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.94 E-value=0.0006 Score=59.27 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
.|+-|.+.||||+||||+++.++..++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 45678999999999999999999987543
No 468
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.94 E-value=0.00082 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.++-+++|.|+.||||||+.+.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457789999999999999999998755
No 469
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.94 E-value=0.00084 Score=52.92 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++-+++|.|+.||||||+++.|+..+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4577899999999999999999987543
No 470
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.0008 Score=54.65 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|++||||||+++.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457789999999999999999998754
No 471
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.93 E-value=0.00079 Score=53.35 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.|+.||||||+++.|+..+.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999999987654
No 472
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.93 E-value=0.00082 Score=53.41 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++-++.|.|++||||||+.+.|+-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4577999999999999999999987653
No 473
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.93 E-value=0.00083 Score=53.61 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.|+.||||||+++.|+..+.
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987654
No 474
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00082 Score=55.25 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|++||||||+++.|+-.+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4578999999999999999999998664
No 475
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.00094 Score=59.36 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~ 37 (227)
+.|.++++.||||+||||+++.|.+++...-+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti 98 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTI 98 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhh
Confidence 34667779999999999999999998876443
No 476
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.0008 Score=55.37 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4577899999999999999999997653
No 477
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00084 Score=54.58 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|++||||||+++.|+..+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4577999999999999999999988654
No 478
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.92 E-value=0.00085 Score=53.26 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|++||||||+++.|+..+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987554
No 479
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0013 Score=53.77 Aligned_cols=39 Identities=33% Similarity=0.392 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
++.-++|.|+||+|||.++..++..+-..|++|..+..|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 456799999999999999999999999779999887744
No 480
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.92 E-value=0.00094 Score=49.55 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.+.+|++.|.=||||||+++.+++.|+-
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 46789999999999999999999999874
No 481
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.92 E-value=0.0015 Score=55.12 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+..|+|+|++||||||+++.|...+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999998874
No 482
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.92 E-value=0.00086 Score=53.57 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-++.|.|+.||||||+++.|+..+.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4577999999999999999999987654
No 483
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00078 Score=55.48 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4577899999999999999999987654
No 484
>PRK08727 hypothetical protein; Validated
Probab=96.92 E-value=0.0017 Score=52.28 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..++|.|++|+|||+++..++..+...+.++.++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 35999999999999999999998888787776654
No 485
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00081 Score=55.64 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999999987553
No 486
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00082 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999997654
No 487
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.00085 Score=55.22 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999999987654
No 488
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.00085 Score=54.53 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+|-+++|.|+.||||||+++.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 45778999999999999999999864
No 489
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.91 E-value=0.00085 Score=55.23 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999997653
No 490
>KOG1969|consensus
Probab=96.91 E-value=0.0023 Score=58.49 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=29.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.++..++||||.||||+|..+|++- |++|..+.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa---GYsVvEIN 358 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA---GYSVVEIN 358 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc---CceEEEec
Confidence 4556789999999999999999999985 55665544
No 491
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.91 E-value=0.00096 Score=50.61 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+...|+|.|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456999999999999999988763
No 492
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.00088 Score=54.55 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 457789999999999999999998643
No 493
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.91 E-value=0.00086 Score=55.04 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999999987654
No 494
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=96.91 E-value=0.013 Score=44.80 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+|+|+|-.+|||.|+++.|.+.++.
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~ 25 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGA 25 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhcc
Confidence 5899999999999999999888864
No 495
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.91 E-value=0.00092 Score=52.51 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+|-+++|.|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999875
No 496
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.00087 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+|-+++|.|+.||||||+.+.|+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45778999999999999999999864
No 497
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.91 E-value=0.0009 Score=52.52 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
..+ +++|.|+.||||||+.+.|.-.+
T Consensus 21 ~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 345 89999999999999999997554
No 498
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0088 Score=55.80 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH-hCCC-CeEE
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNI-PSQF 41 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~-~~~~ 41 (227)
++.+|.|.||.||||||.+..|+..+. ..|- ++..
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~l 220 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLAL 220 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEE
Confidence 467999999999999999999998884 3443 4444
No 499
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00085 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|+|+.||||||+++.|+..+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999987654
No 500
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00086 Score=54.06 Aligned_cols=30 Identities=30% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
.++-.++|.|++||||||+.+.|.--+...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~ 57 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCcCcCC
Confidence 457789999999999999998888765543
Done!