Query psy16874
Match_columns 227
No_of_seqs 117 out of 1271
Neff 9.3
Searched_HMMs 29240
Date Sat Aug 17 00:19:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hlc_A DTMP kinase, thymidylat 100.0 1.7E-35 5.7E-40 232.9 21.6 191 8-217 2-204 (205)
2 3tmk_A Thymidylate kinase; pho 100.0 8.3E-35 2.9E-39 230.1 22.1 199 6-224 3-214 (216)
3 4edh_A DTMP kinase, thymidylat 100.0 2.5E-34 8.5E-39 227.4 22.7 194 6-217 4-210 (213)
4 4tmk_A Protein (thymidylate ki 100.0 1.8E-34 6.2E-39 228.0 21.3 193 7-217 2-210 (213)
5 3v9p_A DTMP kinase, thymidylat 100.0 1.3E-34 4.3E-39 230.7 17.6 191 4-213 21-226 (227)
6 3hjn_A DTMP kinase, thymidylat 100.0 4.6E-34 1.6E-38 223.4 20.0 187 9-215 1-193 (197)
7 3lv8_A DTMP kinase, thymidylat 100.0 1.8E-33 6.1E-38 225.3 21.7 194 6-217 25-232 (236)
8 3ld9_A DTMP kinase, thymidylat 100.0 3.8E-34 1.3E-38 227.1 16.2 191 6-218 19-220 (223)
9 1nn5_A Similar to deoxythymidy 100.0 2.2E-29 7.7E-34 198.6 24.7 202 6-224 7-211 (215)
10 4eaq_A DTMP kinase, thymidylat 100.0 3.7E-30 1.3E-34 205.8 18.1 193 5-216 23-227 (229)
11 2wwf_A Thymidilate kinase, put 100.0 6.2E-29 2.1E-33 195.8 20.1 197 1-214 3-200 (212)
12 2v54_A DTMP kinase, thymidylat 100.0 1.6E-27 5.5E-32 186.6 21.3 196 6-224 2-200 (204)
13 2z0h_A DTMP kinase, thymidylat 100.0 8.5E-28 2.9E-32 187.0 17.4 188 9-216 1-194 (197)
14 2plr_A DTMP kinase, probable t 99.9 5.8E-25 2E-29 172.7 21.5 188 6-217 2-211 (213)
15 2pbr_A DTMP kinase, thymidylat 99.9 1.4E-24 4.8E-29 168.3 20.8 187 9-215 1-193 (195)
16 3umf_A Adenylate kinase; rossm 99.9 3.7E-24 1.3E-28 169.1 8.9 174 4-213 25-213 (217)
17 3sr0_A Adenylate kinase; phosp 99.9 4E-22 1.4E-26 156.5 7.8 167 9-212 1-203 (206)
18 1p5z_B DCK, deoxycytidine kina 99.9 5.1E-23 1.7E-27 167.5 1.2 191 5-216 21-261 (263)
19 3kb2_A SPBC2 prophage-derived 99.8 9.1E-21 3.1E-25 144.0 9.9 160 9-215 2-168 (173)
20 1gtv_A TMK, thymidylate kinase 99.8 7.8E-23 2.7E-27 161.0 -2.8 184 9-209 1-209 (214)
21 2c95_A Adenylate kinase 1; tra 99.8 5.2E-21 1.8E-25 148.4 7.5 174 5-214 6-194 (196)
22 1p6x_A Thymidine kinase; P-loo 99.8 4.4E-21 1.5E-25 160.1 6.7 165 6-188 5-202 (334)
23 2vp4_A Deoxynucleoside kinase; 99.8 3.6E-22 1.2E-26 159.5 0.1 189 5-216 17-227 (230)
24 3gmt_A Adenylate kinase; ssgci 99.8 8.8E-21 3E-25 150.4 5.5 169 7-212 7-228 (230)
25 1osn_A Thymidine kinase, VZV-T 99.8 1.4E-19 4.6E-24 151.3 11.1 164 6-188 10-211 (341)
26 2bwj_A Adenylate kinase 5; pho 99.8 1.4E-19 4.9E-24 140.5 9.7 174 6-215 10-198 (199)
27 3tlx_A Adenylate kinase 2; str 99.8 2.7E-19 9.3E-24 143.9 10.9 173 6-212 27-242 (243)
28 2ocp_A DGK, deoxyguanosine kin 99.8 7.6E-21 2.6E-25 152.7 1.5 192 7-213 1-233 (241)
29 1zak_A Adenylate kinase; ATP:A 99.8 3.2E-19 1.1E-23 141.4 10.8 177 6-218 3-215 (222)
30 1nks_A Adenylate kinase; therm 99.8 1.1E-17 3.7E-22 129.1 18.9 166 9-211 2-193 (194)
31 2jaq_A Deoxyguanosine kinase; 99.8 7.7E-19 2.6E-23 136.8 12.3 176 9-214 1-201 (205)
32 2xb4_A Adenylate kinase; ATP-b 99.8 2.1E-19 7.3E-24 142.7 8.9 166 9-211 1-222 (223)
33 1e2k_A Thymidine kinase; trans 99.8 4.2E-19 1.4E-23 148.0 10.0 164 6-188 2-199 (331)
34 1qf9_A UMP/CMP kinase, protein 99.8 9.4E-19 3.2E-23 135.1 10.9 174 1-213 1-191 (194)
35 1tev_A UMP-CMP kinase; ploop, 99.8 3.3E-18 1.1E-22 132.2 13.8 176 7-213 2-194 (196)
36 1of1_A Thymidine kinase; trans 99.8 5.1E-19 1.7E-23 149.3 9.8 165 5-188 46-244 (376)
37 1ukz_A Uridylate kinase; trans 99.8 5.7E-19 1.9E-23 137.9 9.2 173 6-214 13-202 (203)
38 2cdn_A Adenylate kinase; phosp 99.8 9.2E-19 3.1E-23 136.6 9.7 169 6-211 18-199 (201)
39 3cm0_A Adenylate kinase; ATP-b 99.8 2.8E-19 9.5E-24 137.6 6.6 167 6-211 2-184 (186)
40 1ak2_A Adenylate kinase isoenz 99.8 7.2E-19 2.5E-23 140.5 9.1 173 7-214 15-231 (233)
41 3be4_A Adenylate kinase; malar 99.8 4.8E-19 1.6E-23 140.0 7.9 170 7-211 4-217 (217)
42 1aky_A Adenylate kinase; ATP:A 99.8 1E-18 3.5E-23 138.3 8.5 173 6-212 2-218 (220)
43 3fb4_A Adenylate kinase; psych 99.8 1.7E-18 5.7E-23 136.5 9.1 170 9-213 1-214 (216)
44 3dl0_A Adenylate kinase; phosp 99.8 9.7E-19 3.3E-23 137.9 7.5 170 9-213 1-214 (216)
45 1e4v_A Adenylate kinase; trans 99.7 2.9E-18 9.8E-23 135.2 8.3 165 9-211 1-213 (214)
46 1zd8_A GTP:AMP phosphotransfer 99.7 2.6E-18 8.9E-23 136.6 8.1 171 6-218 5-219 (227)
47 3czq_A Putative polyphosphate 99.7 2.6E-18 9E-23 140.7 4.0 162 6-211 84-276 (304)
48 3t61_A Gluconokinase; PSI-biol 99.7 7.5E-17 2.6E-21 125.8 10.1 161 8-213 18-179 (202)
49 2yvu_A Probable adenylyl-sulfa 99.7 7E-17 2.4E-21 124.4 8.6 171 6-215 11-185 (186)
50 1kht_A Adenylate kinase; phosp 99.7 1.3E-15 4.6E-20 117.1 15.4 174 7-211 2-191 (192)
51 3a4m_A L-seryl-tRNA(SEC) kinas 99.7 5.2E-16 1.8E-20 125.9 13.5 164 6-212 2-172 (260)
52 2rhm_A Putative kinase; P-loop 99.7 5.4E-17 1.8E-21 125.3 6.3 173 6-217 3-188 (193)
53 1m7g_A Adenylylsulfate kinase; 99.7 1.6E-15 5.4E-20 119.2 13.2 162 6-213 23-202 (211)
54 3vaa_A Shikimate kinase, SK; s 99.7 3.2E-16 1.1E-20 122.0 9.0 167 5-216 22-198 (199)
55 3lw7_A Adenylate kinase relate 99.7 1.2E-15 4.1E-20 115.5 11.9 71 145-215 101-178 (179)
56 4eun_A Thermoresistant glucoki 99.6 1.7E-15 5.9E-20 118.0 12.3 165 6-212 27-192 (200)
57 1knq_A Gluconate kinase; ALFA/ 99.6 5.2E-15 1.8E-19 112.6 13.7 169 1-212 1-172 (175)
58 2vli_A Antibiotic resistance p 99.6 6.8E-16 2.3E-20 118.2 8.3 168 6-215 3-173 (183)
59 3czp_A Putative polyphosphate 99.6 1.1E-15 3.7E-20 133.8 9.3 170 6-218 41-240 (500)
60 3trf_A Shikimate kinase, SK; a 99.6 7.4E-16 2.5E-20 118.3 6.1 162 8-216 5-177 (185)
61 1ly1_A Polynucleotide kinase; 99.6 6E-15 2E-19 112.4 11.0 161 8-212 2-171 (181)
62 1zuh_A Shikimate kinase; alpha 99.6 1.2E-15 3.9E-20 115.6 6.0 64 145-211 96-167 (168)
63 2iyv_A Shikimate kinase, SK; t 99.6 4.8E-16 1.6E-20 119.3 3.7 66 146-211 94-166 (184)
64 2pt5_A Shikimate kinase, SK; a 99.6 2E-15 6.8E-20 114.0 7.0 66 146-212 93-162 (168)
65 3czp_A Putative polyphosphate 99.5 2.9E-15 1E-19 131.0 4.2 169 6-217 298-496 (500)
66 1e6c_A Shikimate kinase; phosp 99.5 3.9E-14 1.3E-18 107.3 9.3 67 146-212 94-169 (173)
67 1via_A Shikimate kinase; struc 99.5 1.5E-14 5.3E-19 110.1 6.8 64 146-212 93-165 (175)
68 2qor_A Guanylate kinase; phosp 99.5 2.7E-13 9.2E-18 105.8 14.1 173 6-217 10-200 (204)
69 1vht_A Dephospho-COA kinase; s 99.5 9.7E-13 3.3E-17 103.5 15.1 70 145-216 125-197 (218)
70 2pez_A Bifunctional 3'-phospho 99.5 1.5E-13 5E-18 105.0 9.7 38 6-43 3-40 (179)
71 2bbw_A Adenylate kinase 4, AK4 99.5 2.5E-13 8.4E-18 109.0 10.4 171 7-220 26-241 (246)
72 1x6v_B Bifunctional 3'-phospho 99.5 1.5E-13 5.1E-18 123.2 9.6 167 6-213 50-222 (630)
73 3nwj_A ATSK2; P loop, shikimat 99.5 6.9E-13 2.4E-17 106.7 12.6 164 8-218 48-241 (250)
74 3iij_A Coilin-interacting nucl 99.4 7.9E-14 2.7E-18 106.5 5.3 31 6-36 9-39 (180)
75 1y63_A LMAJ004144AAA protein; 99.4 6.6E-13 2.3E-17 101.9 10.2 33 6-38 8-41 (184)
76 2qt1_A Nicotinamide riboside k 99.4 8.1E-14 2.8E-18 108.9 4.7 69 145-213 129-205 (207)
77 2f6r_A COA synthase, bifunctio 99.4 1.3E-12 4.4E-17 107.1 12.0 74 145-219 199-274 (281)
78 1jjv_A Dephospho-COA kinase; P 99.4 1.8E-12 6E-17 101.1 12.2 71 145-217 123-200 (206)
79 1kag_A SKI, shikimate kinase I 99.4 7.3E-13 2.5E-17 100.3 8.7 64 146-212 97-171 (173)
80 1cke_A CK, MSSA, protein (cyti 99.4 1.4E-12 4.8E-17 103.0 10.1 72 144-215 139-224 (227)
81 3r20_A Cytidylate kinase; stru 99.4 6.2E-12 2.1E-16 100.0 13.1 72 144-215 144-229 (233)
82 1uj2_A Uridine-cytidine kinase 99.4 2.9E-12 9.9E-17 103.2 11.0 79 146-224 151-245 (252)
83 2gks_A Bifunctional SAT/APS ki 99.4 2.3E-12 7.9E-17 114.5 10.5 163 7-213 371-540 (546)
84 3uie_A Adenylyl-sulfate kinase 99.3 4.8E-12 1.6E-16 98.3 9.7 164 6-213 23-194 (200)
85 1uf9_A TT1252 protein; P-loop, 99.3 5.3E-12 1.8E-16 97.8 9.9 69 145-215 124-195 (203)
86 3rhf_A Putative polyphosphate 99.3 2.8E-12 9.6E-17 103.7 7.8 162 7-212 74-266 (289)
87 1qhx_A CPT, protein (chloramph 99.3 1.4E-12 4.7E-17 99.2 5.7 61 146-211 113-176 (178)
88 4e22_A Cytidylate kinase; P-lo 99.3 2E-12 6.9E-17 104.2 6.9 72 144-215 161-246 (252)
89 1m8p_A Sulfate adenylyltransfe 99.3 2.4E-12 8.2E-17 115.0 7.7 166 6-213 394-566 (573)
90 2if2_A Dephospho-COA kinase; a 99.3 1.6E-12 5.6E-17 101.1 5.5 69 145-215 123-193 (204)
91 3tr0_A Guanylate kinase, GMP k 99.3 2.7E-11 9.1E-16 94.0 12.1 67 145-213 118-186 (205)
92 3fdi_A Uncharacterized protein 99.3 2.9E-11 9.8E-16 94.2 11.9 32 7-38 5-36 (201)
93 4i1u_A Dephospho-COA kinase; s 99.3 2.2E-11 7.4E-16 95.2 10.7 71 145-216 131-204 (210)
94 2j41_A Guanylate kinase; GMP, 99.3 2.1E-11 7.2E-16 94.7 9.6 27 6-32 4-30 (207)
95 3ake_A Cytidylate kinase; CMP 99.3 1.1E-10 3.7E-15 90.7 13.7 68 144-212 134-207 (208)
96 2grj_A Dephospho-COA kinase; T 99.3 1.8E-11 6E-16 94.7 9.0 57 146-214 130-187 (192)
97 3tau_A Guanylate kinase, GMP k 99.3 3.8E-11 1.3E-15 93.9 10.6 169 6-214 6-189 (208)
98 1ltq_A Polynucleotide kinase; 99.2 2.6E-11 9E-16 99.8 10.0 152 8-202 2-172 (301)
99 1ex7_A Guanylate kinase; subst 99.2 8.7E-11 3E-15 90.3 11.8 165 9-212 2-183 (186)
100 1q3t_A Cytidylate kinase; nucl 99.2 1.1E-10 3.6E-15 93.0 12.5 70 145-214 152-235 (236)
101 3hdt_A Putative kinase; struct 99.2 2.5E-10 8.5E-15 90.2 14.0 67 147-213 138-218 (223)
102 2h92_A Cytidylate kinase; ross 99.1 2.4E-11 8.3E-16 95.4 3.8 68 145-212 135-216 (219)
103 1kgd_A CASK, peripheral plasma 99.1 3.1E-09 1.1E-13 81.0 12.9 28 6-33 3-30 (180)
104 3lnc_A Guanylate kinase, GMP k 99.0 3.7E-10 1.3E-14 89.5 7.4 28 6-33 25-53 (231)
105 3a00_A Guanylate kinase, GMP k 99.0 1.7E-09 5.7E-14 82.9 10.4 165 8-212 1-183 (186)
106 1gvn_B Zeta; postsegregational 99.0 5E-10 1.7E-14 91.8 6.7 28 6-33 31-58 (287)
107 3ney_A 55 kDa erythrocyte memb 99.0 8.3E-09 2.9E-13 79.8 12.7 41 6-46 17-59 (197)
108 3zvl_A Bifunctional polynucleo 99.0 5.4E-11 1.9E-15 102.6 -0.6 133 6-197 256-397 (416)
109 1zp6_A Hypothetical protein AT 98.9 2.5E-09 8.4E-14 81.9 8.2 66 148-213 108-175 (191)
110 1rz3_A Hypothetical protein rb 98.9 3.4E-08 1.2E-12 76.5 13.7 37 6-42 20-56 (201)
111 2bdt_A BH3686; alpha-beta prot 98.9 1.7E-08 5.9E-13 77.2 10.8 24 8-31 2-25 (189)
112 3asz_A Uridine kinase; cytidin 98.9 1.6E-08 5.6E-13 78.6 10.6 28 6-33 4-31 (211)
113 3cr8_A Sulfate adenylyltranfer 98.9 2.7E-08 9.1E-13 88.4 12.9 166 6-213 367-539 (552)
114 1s96_A Guanylate kinase, GMP k 98.7 3.7E-07 1.3E-11 71.8 14.3 29 5-33 13-41 (219)
115 2axn_A 6-phosphofructo-2-kinas 98.7 8.4E-08 2.9E-12 84.8 11.3 37 7-43 34-70 (520)
116 2p5t_B PEZT; postsegregational 98.7 9.5E-09 3.3E-13 82.6 4.5 28 6-33 30-57 (253)
117 1lvg_A Guanylate kinase, GMP k 98.7 9.3E-07 3.2E-11 68.2 14.9 28 6-33 2-29 (198)
118 2ze6_A Isopentenyl transferase 98.7 9.4E-09 3.2E-13 82.7 3.0 32 9-40 2-33 (253)
119 3ch4_B Pmkase, phosphomevalona 98.6 9.3E-08 3.2E-12 73.9 8.1 35 1-35 3-38 (202)
120 2jeo_A Uridine-cytidine kinase 98.5 8E-07 2.7E-11 70.8 10.8 30 6-35 23-52 (245)
121 3a8t_A Adenylate isopentenyltr 98.5 2.1E-08 7.2E-13 83.5 1.1 32 7-38 39-70 (339)
122 1kjw_A Postsynaptic density pr 98.2 3.8E-05 1.3E-09 63.0 14.5 163 6-214 103-282 (295)
123 3tqc_A Pantothenate kinase; bi 98.2 5.9E-06 2E-10 68.5 9.6 29 6-34 90-118 (321)
124 3tvt_A Disks large 1 tumor sup 98.2 2.6E-05 8.8E-10 63.8 13.2 166 6-214 98-277 (292)
125 1z6g_A Guanylate kinase; struc 98.2 4.5E-05 1.5E-09 59.6 13.8 28 5-32 20-47 (218)
126 1bif_A 6-phosphofructo-2-kinas 98.2 4.3E-06 1.5E-10 73.0 8.7 37 7-43 38-74 (469)
127 1a7j_A Phosphoribulokinase; tr 98.1 1.2E-06 4.2E-11 71.7 3.3 37 7-43 4-40 (290)
128 3c8u_A Fructokinase; YP_612366 98.1 5.9E-06 2E-10 64.1 6.0 38 6-43 20-57 (208)
129 1xjc_A MOBB protein homolog; s 98.1 6.1E-06 2.1E-10 62.1 5.8 38 7-44 3-40 (169)
130 1np6_A Molybdopterin-guanine d 97.9 1.5E-05 5.3E-10 60.2 5.9 36 8-43 6-41 (174)
131 3ec2_A DNA replication protein 97.9 2.1E-05 7.1E-10 59.3 6.3 37 6-42 36-73 (180)
132 3d3q_A TRNA delta(2)-isopenten 97.9 3.5E-06 1.2E-10 70.3 1.7 27 9-35 8-34 (340)
133 1odf_A YGR205W, hypothetical 3 97.9 1.3E-05 4.3E-10 65.6 4.9 30 6-35 29-58 (290)
134 3crm_A TRNA delta(2)-isopenten 97.8 5.4E-06 1.8E-10 68.7 1.7 33 8-40 5-37 (323)
135 1ye8_A Protein THEP1, hypothet 97.7 2.1E-05 7E-10 59.7 4.0 25 9-33 1-25 (178)
136 3foz_A TRNA delta(2)-isopenten 97.7 7.5E-06 2.6E-10 67.3 1.6 29 7-35 9-37 (316)
137 1g8f_A Sulfate adenylyltransfe 97.7 1.7E-05 5.7E-10 69.7 3.9 30 7-36 394-424 (511)
138 3e70_C DPA, signal recognition 97.7 9.1E-05 3.1E-09 61.6 8.0 39 6-44 127-165 (328)
139 1xx6_A Thymidine kinase; NESG, 97.7 7E-05 2.4E-09 57.4 6.7 43 1-43 1-43 (191)
140 1sq5_A Pantothenate kinase; P- 97.7 4.6E-05 1.6E-09 62.8 6.1 28 6-33 78-105 (308)
141 3aez_A Pantothenate kinase; tr 97.7 2.9E-05 9.8E-10 64.2 4.8 30 5-34 87-116 (312)
142 3bos_A Putative DNA replicatio 97.7 4.9E-05 1.7E-09 59.4 6.0 37 7-43 51-87 (242)
143 3exa_A TRNA delta(2)-isopenten 97.7 7.8E-06 2.7E-10 67.3 1.2 29 7-35 2-30 (322)
144 2kjq_A DNAA-related protein; s 97.7 4.2E-05 1.4E-09 56.2 4.6 37 7-43 35-71 (149)
145 4gp7_A Metallophosphoesterase; 97.7 2.3E-05 8E-10 58.8 3.3 23 6-28 7-29 (171)
146 1znw_A Guanylate kinase, GMP k 97.7 2.7E-05 9.2E-10 60.2 3.5 28 6-33 18-45 (207)
147 2f1r_A Molybdopterin-guanine d 97.6 3.3E-05 1.1E-09 58.2 3.8 35 9-43 3-37 (171)
148 1vma_A Cell division protein F 97.6 8.8E-05 3E-09 61.1 6.5 38 6-43 102-139 (306)
149 3t15_A Ribulose bisphosphate c 97.6 3.9E-05 1.3E-09 62.7 4.1 31 6-36 34-64 (293)
150 1rj9_A FTSY, signal recognitio 97.6 0.00017 5.9E-09 59.3 8.0 37 7-43 101-137 (304)
151 1htw_A HI0065; nucleotide-bind 97.6 4.8E-05 1.6E-09 56.5 4.2 27 6-32 31-57 (158)
152 2xkx_A Disks large homolog 4; 97.6 0.00016 5.5E-09 66.3 8.4 163 6-213 529-707 (721)
153 2w58_A DNAI, primosome compone 97.6 8.7E-05 3E-09 56.8 5.7 35 9-43 55-89 (202)
154 3dm5_A SRP54, signal recogniti 97.6 0.00015 5.1E-09 62.6 7.5 38 7-44 99-136 (443)
155 3b9q_A Chloroplast SRP recepto 97.6 0.0001 3.5E-09 60.5 6.1 38 6-43 98-135 (302)
156 3kl4_A SRP54, signal recogniti 97.5 9.7E-05 3.3E-09 63.6 5.8 38 7-44 96-133 (433)
157 2orw_A Thymidine kinase; TMTK, 97.5 0.0001 3.5E-09 56.1 5.2 36 7-42 2-37 (184)
158 2i3b_A HCR-ntpase, human cance 97.5 9.7E-05 3.3E-09 56.5 4.9 33 9-41 2-34 (189)
159 2b8t_A Thymidine kinase; deoxy 97.5 0.00016 5.3E-09 56.8 6.1 38 6-43 10-47 (223)
160 2px0_A Flagellar biosynthesis 97.5 0.00026 8.8E-09 58.0 7.6 38 7-44 104-142 (296)
161 2eyu_A Twitching motility prot 97.5 0.00011 3.8E-09 59.0 5.3 29 6-34 23-51 (261)
162 1jbk_A CLPB protein; beta barr 97.5 0.00013 4.5E-09 54.6 5.3 28 7-34 42-69 (195)
163 2www_A Methylmalonic aciduria 97.5 0.00015 5.2E-09 60.8 6.1 37 7-43 73-109 (349)
164 3p32_A Probable GTPase RV1496/ 97.5 0.00017 6E-09 60.5 6.2 38 6-43 77-114 (355)
165 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00011 3.9E-09 57.1 4.8 38 6-43 21-58 (235)
166 2og2_A Putative signal recogni 97.5 0.00017 5.8E-09 60.7 6.1 38 6-43 155-192 (359)
167 3eph_A TRNA isopentenyltransfe 97.5 3.7E-05 1.3E-09 65.4 2.0 31 8-38 2-32 (409)
168 2v9p_A Replication protein E1; 97.5 9E-05 3.1E-09 60.9 4.3 28 5-32 123-150 (305)
169 1dek_A Deoxynucleoside monopho 97.5 5E-05 1.7E-09 60.3 2.6 67 145-212 167-239 (241)
170 2j9r_A Thymidine kinase; TK1, 97.4 0.0003 1E-08 54.7 6.9 39 5-43 25-63 (214)
171 2yhs_A FTSY, cell division pro 97.4 0.00017 6E-09 62.9 6.1 37 6-42 291-327 (503)
172 1zu4_A FTSY; GTPase, signal re 97.4 0.00024 8.4E-09 58.8 6.5 39 6-44 103-141 (320)
173 2qm8_A GTPase/ATPase; G protei 97.4 0.00021 7.1E-09 59.6 6.1 36 6-41 53-88 (337)
174 1svm_A Large T antigen; AAA+ f 97.4 0.00011 3.7E-09 62.2 4.2 28 6-33 167-194 (377)
175 2x8a_A Nuclear valosin-contain 97.4 0.0001 3.4E-09 59.7 3.6 24 11-34 47-70 (274)
176 3tif_A Uncharacterized ABC tra 97.4 8.8E-05 3E-09 58.7 3.2 27 6-32 29-55 (235)
177 2ehv_A Hypothetical protein PH 97.4 8.9E-05 3.1E-09 58.5 3.2 37 6-42 28-65 (251)
178 1cr0_A DNA primase/helicase; R 97.4 0.00025 8.7E-09 57.7 5.9 38 6-43 33-71 (296)
179 2p65_A Hypothetical protein PF 97.4 0.00017 5.8E-09 53.8 4.4 28 7-34 42-69 (187)
180 2dr3_A UPF0273 protein PH0284; 97.4 0.00024 8.1E-09 55.8 5.4 37 7-43 22-58 (247)
181 4a74_A DNA repair and recombin 97.3 0.00011 3.6E-09 57.2 3.3 28 6-33 23-50 (231)
182 3syl_A Protein CBBX; photosynt 97.3 0.00028 9.7E-09 57.5 5.9 31 7-37 66-96 (309)
183 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00012 4.2E-09 58.2 3.6 28 7-34 38-65 (262)
184 2j37_W Signal recognition part 97.3 0.00028 9.5E-09 61.9 6.0 38 6-43 99-136 (504)
185 3kfv_A Tight junction protein 97.3 0.0014 4.8E-08 53.7 9.6 25 7-34 144-168 (308)
186 1ixz_A ATP-dependent metallopr 97.3 0.00015 5E-09 57.7 3.7 23 11-33 52-74 (254)
187 2pcj_A ABC transporter, lipopr 97.3 0.0001 3.4E-09 57.9 2.5 27 6-32 28-54 (224)
188 2cbz_A Multidrug resistance-as 97.3 0.00013 4.4E-09 57.8 3.2 28 6-33 29-56 (237)
189 1l8q_A Chromosomal replication 97.3 0.00026 8.8E-09 58.4 5.1 36 8-43 37-72 (324)
190 1lv7_A FTSH; alpha/beta domain 97.3 0.00019 6.6E-09 57.1 4.2 27 8-34 45-71 (257)
191 1mv5_A LMRA, multidrug resista 97.3 0.00016 5.3E-09 57.5 3.4 28 6-33 26-53 (243)
192 2qmh_A HPR kinase/phosphorylas 97.3 0.00013 4.5E-09 56.1 2.8 27 7-33 33-59 (205)
193 2fn4_A P23, RAS-related protei 97.3 0.00023 7.9E-09 52.8 4.2 31 1-31 2-32 (181)
194 1p9r_A General secretion pathw 97.3 0.00036 1.2E-08 59.9 5.8 39 7-45 166-204 (418)
195 1yrb_A ATP(GTP)binding protein 97.3 0.00042 1.4E-08 55.1 5.9 36 7-43 13-48 (262)
196 3jvv_A Twitching mobility prot 97.2 0.00031 1.1E-08 59.0 5.3 36 8-43 123-159 (356)
197 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00029 9.9E-09 59.0 4.9 29 8-36 24-52 (359)
198 2p67_A LAO/AO transport system 97.2 0.00044 1.5E-08 57.7 6.1 38 6-43 54-91 (341)
199 1b0u_A Histidine permease; ABC 97.2 0.00016 5.3E-09 58.2 3.2 27 6-32 30-56 (262)
200 3tsz_A Tight junction protein 97.2 0.0011 3.7E-08 56.4 8.5 26 6-34 230-255 (391)
201 3hr8_A Protein RECA; alpha and 97.2 0.00038 1.3E-08 58.5 5.6 38 7-44 60-97 (356)
202 4fcw_A Chaperone protein CLPB; 97.2 0.00042 1.4E-08 56.5 5.7 34 9-42 48-81 (311)
203 2xxa_A Signal recognition part 97.2 0.00051 1.8E-08 59.2 6.5 39 6-44 98-137 (433)
204 2qgz_A Helicase loader, putati 97.2 0.00046 1.6E-08 56.8 5.9 36 8-43 152-188 (308)
205 1njg_A DNA polymerase III subu 97.2 0.00025 8.5E-09 55.0 4.1 28 8-35 45-72 (250)
206 3gfo_A Cobalt import ATP-bindi 97.2 0.00014 4.7E-09 59.0 2.6 27 6-32 32-58 (275)
207 2olj_A Amino acid ABC transpor 97.2 0.00017 6E-09 58.0 3.2 27 6-32 48-74 (263)
208 2pze_A Cystic fibrosis transme 97.2 0.00015 5E-09 57.2 2.7 28 6-33 32-59 (229)
209 2ff7_A Alpha-hemolysin translo 97.2 0.00014 4.9E-09 57.9 2.6 27 6-32 33-59 (247)
210 3cf0_A Transitional endoplasmi 97.2 0.00019 6.5E-09 58.7 3.5 28 6-33 47-74 (301)
211 1tue_A Replication protein E1; 97.2 0.0002 6.7E-09 55.4 3.3 28 7-34 57-84 (212)
212 2ghi_A Transport protein; mult 97.2 0.00018 6E-09 57.9 3.2 27 6-32 44-70 (260)
213 2ixe_A Antigen peptide transpo 97.2 0.00018 6E-09 58.2 3.2 28 6-33 43-70 (271)
214 1in4_A RUVB, holliday junction 97.2 0.00019 6.4E-09 59.7 3.4 26 9-34 52-77 (334)
215 2zu0_C Probable ATP-dependent 97.2 0.00022 7.6E-09 57.5 3.7 26 6-31 44-69 (267)
216 1vpl_A ABC transporter, ATP-bi 97.2 0.00018 6.2E-09 57.6 3.2 27 6-32 39-65 (256)
217 4g1u_C Hemin import ATP-bindin 97.2 0.00015 5.1E-09 58.5 2.7 28 6-33 35-62 (266)
218 1d2n_A N-ethylmaleimide-sensit 97.2 0.0002 6.8E-09 57.6 3.4 29 6-34 62-90 (272)
219 2ewv_A Twitching motility prot 97.2 0.00029 9.8E-09 59.6 4.5 30 6-35 134-163 (372)
220 2cvh_A DNA repair and recombin 97.2 0.00023 7.8E-09 55.0 3.6 35 6-43 18-52 (220)
221 4b4t_M 26S protease regulatory 97.2 0.00017 5.8E-09 62.1 3.0 32 7-38 214-245 (434)
222 3h4m_A Proteasome-activating n 97.2 0.00021 7.3E-09 57.6 3.5 28 7-34 50-77 (285)
223 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00023 7.7E-09 56.8 3.5 26 6-31 27-52 (250)
224 1ji0_A ABC transporter; ATP bi 97.2 0.00016 5.5E-09 57.3 2.6 27 6-32 30-56 (240)
225 1g6h_A High-affinity branched- 97.2 0.00016 5.5E-09 57.9 2.6 27 6-32 31-57 (257)
226 2v3c_C SRP54, signal recogniti 97.2 0.00018 6.1E-09 62.0 3.1 37 7-43 98-134 (432)
227 4b4t_K 26S protease regulatory 97.2 0.00019 6.5E-09 61.7 3.2 32 7-38 205-236 (428)
228 1ky3_A GTP-binding protein YPT 97.2 0.00029 1E-08 52.3 3.9 30 1-30 1-30 (182)
229 1sgw_A Putative ABC transporte 97.2 0.00014 4.8E-09 56.7 2.1 27 6-32 33-59 (214)
230 1j8m_F SRP54, signal recogniti 97.2 0.00071 2.4E-08 55.4 6.4 37 8-44 98-134 (297)
231 3b9p_A CG5977-PA, isoform A; A 97.2 0.00023 7.8E-09 57.8 3.4 27 8-34 54-80 (297)
232 1ls1_A Signal recognition part 97.2 0.00065 2.2E-08 55.5 6.2 38 7-44 97-134 (295)
233 1iy2_A ATP-dependent metallopr 97.2 0.00025 8.7E-09 57.2 3.6 23 11-33 76-98 (278)
234 4b4t_L 26S protease subunit RP 97.1 0.00019 6.6E-09 61.8 3.0 31 7-37 214-244 (437)
235 2yz2_A Putative ABC transporte 97.1 0.00023 7.8E-09 57.3 3.2 27 6-32 31-57 (266)
236 2qi9_C Vitamin B12 import ATP- 97.1 0.0002 6.9E-09 57.1 2.7 28 6-33 24-51 (249)
237 2onk_A Molybdate/tungstate ABC 97.1 0.00027 9.3E-09 56.1 3.4 25 9-33 25-49 (240)
238 3b85_A Phosphate starvation-in 97.1 0.0002 7E-09 55.5 2.5 25 7-31 21-45 (208)
239 1ofh_A ATP-dependent HSL prote 97.1 0.00024 8.1E-09 57.8 3.0 27 8-34 50-76 (310)
240 2nq2_C Hypothetical ABC transp 97.1 0.00021 7.3E-09 57.1 2.6 28 6-33 29-56 (253)
241 2wsm_A Hydrogenase expression/ 97.1 0.00071 2.4E-08 52.2 5.6 36 7-43 29-64 (221)
242 1g41_A Heat shock protein HSLU 97.1 0.00018 6.3E-09 62.0 2.3 32 8-39 50-81 (444)
243 1c9k_A COBU, adenosylcobinamid 97.1 0.00025 8.7E-09 53.7 2.8 30 10-43 1-30 (180)
244 2r8r_A Sensor protein; KDPD, P 97.1 0.00089 3.1E-08 52.5 6.0 37 6-42 3-40 (228)
245 4b4t_J 26S protease regulatory 97.1 0.00021 7.1E-09 60.9 2.6 31 8-38 182-212 (405)
246 3fvq_A Fe(3+) IONS import ATP- 97.1 0.0003 1E-08 59.0 3.5 28 6-33 28-55 (359)
247 3hws_A ATP-dependent CLP prote 97.1 0.00022 7.5E-09 59.9 2.6 27 8-34 51-77 (363)
248 2ihy_A ABC transporter, ATP-bi 97.1 0.00027 9.3E-09 57.3 3.1 27 6-32 45-71 (279)
249 3n70_A Transport activator; si 97.1 0.00031 1.1E-08 51.0 3.1 33 8-40 24-56 (145)
250 1vg8_A RAS-related protein RAB 97.1 0.0004 1.4E-08 52.9 3.9 31 1-31 1-31 (207)
251 2r62_A Cell division protease 97.1 0.00017 5.9E-09 57.7 1.8 29 10-38 46-74 (268)
252 2zr9_A Protein RECA, recombina 97.1 0.00062 2.1E-08 57.0 5.3 38 7-44 60-97 (349)
253 3shw_A Tight junction protein 97.1 0.0013 4.5E-08 57.0 7.4 26 6-34 222-247 (468)
254 3eie_A Vacuolar protein sortin 97.1 0.00026 8.8E-09 58.5 2.8 27 8-34 51-77 (322)
255 1n0w_A DNA repair protein RAD5 97.1 0.0003 1E-08 55.1 3.1 26 6-31 22-47 (243)
256 2ffh_A Protein (FFH); SRP54, s 97.0 0.00086 3E-08 57.6 6.1 38 7-44 97-134 (425)
257 2yyz_A Sugar ABC transporter, 97.0 0.00036 1.2E-08 58.6 3.7 27 6-32 27-53 (359)
258 3rlf_A Maltose/maltodextrin im 97.0 0.00037 1.3E-08 59.0 3.7 28 6-33 27-54 (381)
259 2chg_A Replication factor C sm 97.0 0.00039 1.3E-08 53.2 3.6 27 10-36 40-66 (226)
260 3tw8_B RAS-related protein RAB 97.0 0.00038 1.3E-08 51.6 3.4 30 1-30 2-31 (181)
261 4dey_A Voltage-dependent L-typ 97.0 0.0052 1.8E-07 50.8 10.4 80 137-220 243-327 (337)
262 1u94_A RECA protein, recombina 97.0 0.00072 2.5E-08 56.8 5.4 38 7-44 62-99 (356)
263 2wjg_A FEOB, ferrous iron tran 97.0 0.0005 1.7E-08 51.5 4.1 25 6-30 5-29 (188)
264 2it1_A 362AA long hypothetical 97.0 0.00039 1.3E-08 58.5 3.7 27 6-32 27-53 (362)
265 3tui_C Methionine import ATP-b 97.0 0.0004 1.4E-08 58.5 3.7 27 6-32 52-78 (366)
266 3clv_A RAB5 protein, putative; 97.0 0.00062 2.1E-08 51.3 4.5 26 6-31 5-30 (208)
267 2bbs_A Cystic fibrosis transme 97.0 0.00032 1.1E-08 57.3 3.0 27 6-32 62-88 (290)
268 1v43_A Sugar-binding transport 97.0 0.00041 1.4E-08 58.6 3.7 27 6-32 35-61 (372)
269 2r2a_A Uncharacterized protein 97.0 0.00049 1.7E-08 53.0 3.8 25 8-32 5-29 (199)
270 2qby_A CDC6 homolog 1, cell di 97.0 0.0005 1.7E-08 57.4 4.1 37 6-42 43-82 (386)
271 1z47_A CYSA, putative ABC-tran 97.0 0.00036 1.2E-08 58.6 3.2 27 6-32 39-65 (355)
272 3nh6_A ATP-binding cassette SU 97.0 0.00028 9.5E-09 58.0 2.4 28 6-33 78-105 (306)
273 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.00045 1.5E-08 57.2 3.7 25 8-32 45-69 (322)
274 4b4t_H 26S protease regulatory 97.0 0.00027 9.3E-09 61.1 2.3 32 7-38 242-273 (467)
275 1lw7_A Transcriptional regulat 97.0 0.00039 1.3E-08 58.5 3.2 26 8-33 170-195 (365)
276 3sop_A Neuronal-specific septi 97.0 0.00054 1.9E-08 55.3 3.9 25 9-33 3-27 (270)
277 1nij_A Hypothetical protein YJ 97.0 0.00042 1.4E-08 57.2 3.3 27 6-32 2-28 (318)
278 1pui_A ENGB, probable GTP-bind 97.0 0.00031 1.1E-08 53.8 2.3 25 6-30 24-48 (210)
279 3d31_A Sulfate/molybdate ABC t 97.0 0.00034 1.2E-08 58.5 2.7 27 6-32 24-50 (348)
280 2wji_A Ferrous iron transport 96.9 0.00061 2.1E-08 50.2 3.8 23 8-30 3-25 (165)
281 3uk6_A RUVB-like 2; hexameric 96.9 0.00048 1.6E-08 57.6 3.5 27 8-34 70-96 (368)
282 1fnn_A CDC6P, cell division co 96.9 0.00088 3E-08 56.1 5.2 35 9-43 45-80 (389)
283 3te6_A Regulatory protein SIR3 96.9 0.00045 1.6E-08 57.1 3.3 29 6-34 43-71 (318)
284 2bme_A RAB4A, RAS-related prot 96.9 0.00065 2.2E-08 50.7 3.9 25 6-30 8-32 (186)
285 2pjz_A Hypothetical protein ST 96.9 0.00043 1.5E-08 55.7 3.0 25 8-32 30-54 (263)
286 1g29_1 MALK, maltose transport 96.9 0.00043 1.5E-08 58.5 3.2 27 6-32 27-53 (372)
287 4b4t_I 26S protease regulatory 96.9 0.00042 1.5E-08 59.3 3.1 32 7-38 215-246 (437)
288 2qby_B CDC6 homolog 3, cell di 96.9 0.00078 2.7E-08 56.5 4.7 28 7-34 44-71 (384)
289 1um8_A ATP-dependent CLP prote 96.9 0.00035 1.2E-08 58.9 2.5 27 8-34 72-98 (376)
290 3e2i_A Thymidine kinase; Zn-bi 96.9 0.0016 5.5E-08 50.6 6.0 38 6-43 26-63 (219)
291 1nlf_A Regulatory protein REPA 96.9 0.00054 1.8E-08 55.3 3.5 29 6-34 28-56 (279)
292 2v1u_A Cell division control p 96.9 0.0011 3.6E-08 55.5 5.4 29 6-34 42-70 (387)
293 3gd7_A Fusion complex of cysti 96.9 0.00056 1.9E-08 58.1 3.5 27 6-32 45-71 (390)
294 3bh0_A DNAB-like replicative h 96.9 0.0012 4.1E-08 54.4 5.5 38 6-43 66-103 (315)
295 2gj8_A MNME, tRNA modification 96.9 0.00063 2.2E-08 50.6 3.5 24 7-30 3-26 (172)
296 1upt_A ARL1, ADP-ribosylation 96.9 0.00092 3.1E-08 49.0 4.3 25 6-30 5-29 (171)
297 2gza_A Type IV secretion syste 96.9 0.00044 1.5E-08 58.2 2.7 28 7-34 174-201 (361)
298 2bcg_Y Protein YP2, GTP-bindin 96.9 0.00077 2.6E-08 51.4 3.8 30 1-30 1-30 (206)
299 1oix_A RAS-related protein RAB 96.9 0.00076 2.6E-08 51.1 3.8 23 9-31 30-52 (191)
300 1oxx_K GLCV, glucose, ABC tran 96.9 0.00034 1.2E-08 58.7 1.9 27 6-32 29-55 (353)
301 2hf9_A Probable hydrogenase ni 96.9 0.0009 3.1E-08 51.8 4.2 28 7-34 37-64 (226)
302 2qp9_X Vacuolar protein sortin 96.8 0.0004 1.4E-08 58.2 2.3 27 8-34 84-110 (355)
303 3bc1_A RAS-related protein RAB 96.8 0.00097 3.3E-08 49.9 4.3 23 8-30 11-33 (195)
304 2f9l_A RAB11B, member RAS onco 96.8 0.00084 2.9E-08 51.0 3.8 24 8-31 5-28 (199)
305 1gwn_A RHO-related GTP-binding 96.8 0.00079 2.7E-08 51.7 3.7 25 7-31 27-51 (205)
306 3m6a_A ATP-dependent protease 96.8 0.00073 2.5E-08 59.9 3.9 28 7-34 107-134 (543)
307 1x3s_A RAS-related protein RAB 96.8 0.00064 2.2E-08 51.1 3.1 24 8-31 15-38 (195)
308 2bjv_A PSP operon transcriptio 96.8 0.00083 2.8E-08 53.6 3.9 36 8-43 29-64 (265)
309 1kao_A RAP2A; GTP-binding prot 96.8 0.001 3.4E-08 48.4 4.0 23 8-30 3-25 (167)
310 2c9o_A RUVB-like 1; hexameric 96.8 0.00087 3E-08 58.1 4.1 27 8-34 63-89 (456)
311 1sxj_C Activator 1 40 kDa subu 96.8 0.00071 2.4E-08 56.2 3.4 25 11-35 49-73 (340)
312 2orv_A Thymidine kinase; TP4A 96.8 0.0023 8E-08 50.2 6.1 37 7-43 18-54 (234)
313 3t5g_A GTP-binding protein RHE 96.8 0.00069 2.4E-08 50.4 3.0 25 6-30 4-28 (181)
314 2fu5_C RAS-related protein RAB 96.8 0.00052 1.8E-08 51.2 2.3 30 1-30 1-30 (183)
315 2lkc_A Translation initiation 96.8 0.0011 3.7E-08 49.1 4.0 25 6-30 6-30 (178)
316 2rcn_A Probable GTPase ENGC; Y 96.8 0.00077 2.6E-08 56.6 3.5 25 7-31 214-238 (358)
317 1z2a_A RAS-related protein RAB 96.8 0.001 3.5E-08 48.6 3.8 24 7-30 4-27 (168)
318 2hxs_A RAB-26, RAS-related pro 96.8 0.0011 3.9E-08 48.9 4.1 25 6-30 4-28 (178)
319 2qag_B Septin-6, protein NEDD5 96.8 0.00073 2.5E-08 58.0 3.3 26 6-31 38-65 (427)
320 1pzn_A RAD51, DNA repair and r 96.8 0.00072 2.5E-08 56.6 3.3 27 6-32 129-155 (349)
321 1ega_A Protein (GTP-binding pr 96.8 0.00087 3E-08 54.9 3.7 25 6-30 6-30 (301)
322 2iwr_A Centaurin gamma 1; ANK 96.8 0.0009 3.1E-08 49.6 3.5 24 7-30 6-29 (178)
323 3pfi_A Holliday junction ATP-d 96.7 0.00061 2.1E-08 56.3 2.6 27 8-34 55-81 (338)
324 3end_A Light-independent proto 96.7 0.0023 7.8E-08 52.2 6.1 38 7-44 40-77 (307)
325 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.00097 3.3E-08 49.2 3.5 23 8-30 7-29 (177)
326 2ce2_X GTPase HRAS; signaling 96.7 0.0011 3.9E-08 48.0 3.8 24 8-31 3-26 (166)
327 3d8b_A Fidgetin-like protein 1 96.7 0.00083 2.8E-08 56.3 3.5 28 7-34 116-143 (357)
328 3bwd_D RAC-like GTP-binding pr 96.7 0.0011 3.7E-08 49.2 3.7 25 6-30 6-30 (182)
329 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00068 2.3E-08 58.9 2.9 28 6-33 136-163 (460)
330 2dyk_A GTP-binding protein; GT 96.7 0.0011 3.9E-08 48.0 3.8 23 9-31 2-24 (161)
331 2ged_A SR-beta, signal recogni 96.7 0.0011 3.9E-08 49.8 3.9 24 7-30 47-70 (193)
332 1sxj_D Activator 1 41 kDa subu 96.7 0.00097 3.3E-08 55.2 3.8 24 11-34 61-84 (353)
333 1u8z_A RAS-related protein RAL 96.7 0.0012 4.2E-08 48.0 4.0 23 8-30 4-26 (168)
334 1xp8_A RECA protein, recombina 96.7 0.0017 5.8E-08 54.7 5.3 38 7-44 73-110 (366)
335 3tkl_A RAS-related protein RAB 96.7 0.0012 4E-08 49.7 4.0 23 8-30 16-38 (196)
336 2yv5_A YJEQ protein; hydrolase 96.7 0.00091 3.1E-08 54.8 3.5 25 7-32 164-188 (302)
337 3kkq_A RAS-related protein M-R 96.7 0.0014 4.9E-08 48.7 4.3 24 8-31 18-41 (183)
338 2z4s_A Chromosomal replication 96.7 0.0012 4.1E-08 57.0 4.3 36 8-43 130-167 (440)
339 1sxj_E Activator 1 40 kDa subu 96.7 0.001 3.5E-08 55.3 3.7 22 11-32 39-60 (354)
340 3con_A GTPase NRAS; structural 96.7 0.0011 3.8E-08 49.7 3.6 24 8-31 21-44 (190)
341 3kta_A Chromosome segregation 96.7 0.001 3.4E-08 49.9 3.3 24 10-33 28-51 (182)
342 3e1s_A Exodeoxyribonuclease V, 96.7 0.002 6.7E-08 57.6 5.7 36 8-43 204-239 (574)
343 2erx_A GTP-binding protein DI- 96.7 0.0012 4.3E-08 48.2 3.7 23 8-30 3-25 (172)
344 2atv_A RERG, RAS-like estrogen 96.7 0.0013 4.6E-08 49.6 4.0 24 7-30 27-50 (196)
345 3oes_A GTPase rhebl1; small GT 96.7 0.0012 4.2E-08 50.1 3.7 24 7-30 23-46 (201)
346 1tq4_A IIGP1, interferon-induc 96.7 0.0011 3.7E-08 56.8 3.7 26 7-32 68-93 (413)
347 1c1y_A RAS-related protein RAP 96.6 0.0015 5.2E-08 47.5 4.0 23 8-30 3-25 (167)
348 1z08_A RAS-related protein RAB 96.6 0.0013 4.6E-08 48.1 3.6 24 7-30 5-28 (170)
349 1sxj_A Activator 1 95 kDa subu 96.6 0.001 3.6E-08 58.5 3.5 26 8-33 77-102 (516)
350 2r6a_A DNAB helicase, replicat 96.6 0.0026 8.9E-08 55.0 6.0 39 6-44 201-240 (454)
351 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.00059 2E-08 56.7 1.8 28 7-34 170-197 (330)
352 2nzj_A GTP-binding protein REM 96.6 0.0015 5E-08 48.1 3.8 24 7-30 3-26 (175)
353 1nrj_B SR-beta, signal recogni 96.6 0.0014 4.8E-08 50.4 3.8 25 7-31 11-35 (218)
354 1w4r_A Thymidine kinase; type 96.6 0.0036 1.2E-07 47.8 6.0 37 7-43 19-55 (195)
355 1iqp_A RFCS; clamp loader, ext 96.6 0.0016 5.5E-08 53.2 4.4 25 10-34 48-72 (327)
356 1jr3_A DNA polymerase III subu 96.6 0.0013 4.4E-08 54.9 3.8 28 8-35 38-65 (373)
357 2zts_A Putative uncharacterize 96.6 0.0021 7.2E-08 50.3 4.9 37 7-43 29-66 (251)
358 2y8e_A RAB-protein 6, GH09086P 96.6 0.0013 4.5E-08 48.5 3.5 22 9-30 15-36 (179)
359 3tqf_A HPR(Ser) kinase; transf 96.6 0.0015 5E-08 49.1 3.6 23 8-30 16-38 (181)
360 4dsu_A GTPase KRAS, isoform 2B 96.6 0.0014 4.8E-08 48.8 3.6 24 7-30 3-26 (189)
361 1svi_A GTP-binding protein YSX 96.6 0.0014 4.9E-08 49.3 3.6 24 7-30 22-45 (195)
362 2fg5_A RAB-22B, RAS-related pr 96.6 0.0014 4.7E-08 49.5 3.5 25 7-31 22-46 (192)
363 1moz_A ARL1, ADP-ribosylation 96.6 0.001 3.6E-08 49.4 2.7 24 6-29 16-39 (183)
364 3iev_A GTP-binding protein ERA 96.6 0.0013 4.6E-08 53.9 3.6 25 6-30 8-32 (308)
365 1r2q_A RAS-related protein RAB 96.6 0.0011 3.9E-08 48.3 2.9 23 8-30 6-28 (170)
366 1u0l_A Probable GTPase ENGC; p 96.6 0.0012 4.2E-08 54.0 3.3 24 8-31 169-192 (301)
367 1z0j_A RAB-22, RAS-related pro 96.6 0.0014 4.9E-08 47.8 3.4 24 8-31 6-29 (170)
368 2j0v_A RAC-like GTP-binding pr 96.6 0.0019 6.6E-08 49.3 4.2 25 6-30 7-31 (212)
369 4a1f_A DNAB helicase, replicat 96.6 0.0028 9.4E-08 52.8 5.4 39 6-44 44-82 (338)
370 1z0f_A RAB14, member RAS oncog 96.6 0.0017 6E-08 47.8 3.8 24 8-31 15-38 (179)
371 1fzq_A ADP-ribosylation factor 96.6 0.0016 5.6E-08 48.6 3.7 25 6-30 14-38 (181)
372 2ce7_A Cell division protein F 96.6 0.0012 4E-08 57.6 3.2 26 9-34 50-75 (476)
373 1g16_A RAS-related protein SEC 96.6 0.0017 5.8E-08 47.4 3.7 23 8-30 3-25 (170)
374 3ozx_A RNAse L inhibitor; ATP 96.5 0.0014 4.9E-08 58.0 3.7 28 5-32 22-49 (538)
375 3lxx_A GTPase IMAP family memb 96.5 0.0016 5.6E-08 51.1 3.7 24 7-30 28-51 (239)
376 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0014 4.8E-08 54.2 3.3 26 7-32 122-147 (331)
377 2zej_A Dardarin, leucine-rich 96.5 0.0013 4.5E-08 49.3 3.0 22 9-30 3-24 (184)
378 1ek0_A Protein (GTP-binding pr 96.5 0.0016 5.6E-08 47.5 3.4 23 8-30 3-25 (170)
379 2oil_A CATX-8, RAS-related pro 96.5 0.0019 6.4E-08 48.6 3.8 23 8-30 25-47 (193)
380 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0014 4.9E-08 57.4 3.6 23 11-33 67-89 (499)
381 3pxg_A Negative regulator of g 96.5 0.0021 7.3E-08 55.9 4.6 27 8-34 201-227 (468)
382 2bov_A RAla, RAS-related prote 96.5 0.0021 7.3E-08 48.7 4.1 23 8-30 14-36 (206)
383 1hqc_A RUVB; extended AAA-ATPa 96.5 0.001 3.6E-08 54.4 2.5 26 8-33 38-63 (324)
384 3pvs_A Replication-associated 96.5 0.0016 5.3E-08 56.4 3.6 26 9-34 51-76 (447)
385 3vfd_A Spastin; ATPase, microt 96.5 0.00094 3.2E-08 56.6 2.2 27 8-34 148-174 (389)
386 2efe_B Small GTP-binding prote 96.5 0.0019 6.5E-08 47.8 3.6 23 8-30 12-34 (181)
387 2gf0_A GTP-binding protein DI- 96.5 0.0023 7.8E-08 48.2 4.1 24 7-30 7-30 (199)
388 2a9k_A RAS-related protein RAL 96.5 0.0021 7E-08 47.8 3.8 23 8-30 18-40 (187)
389 2z43_A DNA repair and recombin 96.5 0.0019 6.4E-08 53.4 3.9 37 7-43 106-148 (324)
390 2zan_A Vacuolar protein sortin 96.5 0.0015 5E-08 56.5 3.3 25 8-32 167-191 (444)
391 3pqc_A Probable GTP-binding pr 96.5 0.0019 6.6E-08 48.3 3.6 24 8-31 23-46 (195)
392 3kjh_A CO dehydrogenase/acetyl 96.5 0.0024 8E-08 50.1 4.3 35 10-44 2-36 (254)
393 3k53_A Ferrous iron transport 96.5 0.0019 6.5E-08 51.8 3.7 24 8-31 3-26 (271)
394 3b5x_A Lipid A export ATP-bind 96.5 0.0015 5.3E-08 58.3 3.5 29 6-34 367-395 (582)
395 1v5w_A DMC1, meiotic recombina 96.5 0.0029 1E-07 52.7 5.0 38 6-43 120-163 (343)
396 2atx_A Small GTP binding prote 96.5 0.002 7E-08 48.4 3.7 23 9-31 19-41 (194)
397 1t9h_A YLOQ, probable GTPase E 96.5 0.00058 2E-08 56.2 0.7 26 7-32 172-197 (307)
398 2oap_1 GSPE-2, type II secreti 96.5 0.0012 4E-08 58.1 2.6 27 7-33 259-285 (511)
399 3q85_A GTP-binding protein REM 96.5 0.0017 5.8E-08 47.5 3.1 21 9-29 3-23 (169)
400 1z06_A RAS-related protein RAB 96.5 0.0023 7.7E-08 48.0 3.9 23 8-30 20-42 (189)
401 1ni3_A YCHF GTPase, YCHF GTP-b 96.5 0.002 6.8E-08 54.8 3.9 25 6-30 18-42 (392)
402 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0019 6.6E-08 57.2 3.9 27 6-32 45-71 (538)
403 2r44_A Uncharacterized protein 96.4 0.001 3.5E-08 54.8 2.1 26 9-34 47-72 (331)
404 3b60_A Lipid A export ATP-bind 96.4 0.0016 5.5E-08 58.2 3.4 28 6-33 367-394 (582)
405 3q72_A GTP-binding protein RAD 96.4 0.0019 6.3E-08 47.1 3.2 21 9-29 3-23 (166)
406 2xtp_A GTPase IMAP family memb 96.4 0.002 7E-08 51.1 3.6 24 7-30 21-44 (260)
407 1ksh_A ARF-like protein 2; sma 96.4 0.0021 7.3E-08 47.9 3.6 24 7-30 17-40 (186)
408 1m2o_B GTP-binding protein SAR 96.4 0.002 6.7E-08 48.6 3.4 23 8-30 23-45 (190)
409 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0022 7.4E-08 47.6 3.6 24 7-30 4-27 (186)
410 2g6b_A RAS-related protein RAB 96.4 0.0023 7.8E-08 47.3 3.7 23 8-30 10-32 (180)
411 3bgw_A DNAB-like replicative h 96.4 0.0034 1.2E-07 54.2 5.2 38 6-43 195-232 (444)
412 3ihw_A Centg3; RAS, centaurin, 96.4 0.0029 1E-07 47.4 4.3 23 8-30 20-42 (184)
413 3j16_B RLI1P; ribosome recycli 96.4 0.0021 7.1E-08 57.8 3.9 27 6-32 101-127 (608)
414 2chq_A Replication factor C sm 96.4 0.0019 6.7E-08 52.4 3.5 25 10-34 40-64 (319)
415 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0023 7.9E-08 47.8 3.7 25 7-31 6-30 (184)
416 2p5s_A RAS and EF-hand domain 96.4 0.0024 8.2E-08 48.4 3.8 24 7-30 27-50 (199)
417 2q6t_A DNAB replication FORK h 96.4 0.0045 1.5E-07 53.4 5.9 38 6-43 198-236 (444)
418 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0032 1.1E-07 45.9 4.3 26 8-33 23-48 (149)
419 1zd9_A ADP-ribosylation factor 96.4 0.0023 7.8E-08 48.1 3.6 23 8-30 22-44 (188)
420 1zj6_A ADP-ribosylation factor 96.4 0.0024 8.3E-08 47.7 3.8 24 7-30 15-38 (187)
421 3c5c_A RAS-like protein 12; GD 96.4 0.0026 8.8E-08 47.8 3.9 24 8-31 21-44 (187)
422 1wf3_A GTP-binding protein; GT 96.4 0.0022 7.4E-08 52.5 3.7 29 1-30 1-29 (301)
423 1cp2_A CP2, nitrogenase iron p 96.4 0.0051 1.8E-07 48.9 5.8 36 9-44 2-37 (269)
424 3u61_B DNA polymerase accessor 96.4 0.0019 6.6E-08 53.0 3.3 27 7-33 47-73 (324)
425 3lda_A DNA repair protein RAD5 96.4 0.0016 5.6E-08 55.4 2.9 25 7-31 177-201 (400)
426 1sxj_B Activator 1 37 kDa subu 96.4 0.0022 7.6E-08 52.2 3.6 24 11-34 45-68 (323)
427 3upu_A ATP-dependent DNA helic 96.4 0.0044 1.5E-07 53.7 5.6 28 10-37 47-74 (459)
428 3co5_A Putative two-component 96.3 0.0009 3.1E-08 48.4 1.0 25 9-33 28-52 (143)
429 4ag6_A VIRB4 ATPase, type IV s 96.3 0.0041 1.4E-07 52.6 5.3 36 8-43 35-70 (392)
430 2fh5_B SR-beta, signal recogni 96.3 0.0024 8.3E-08 48.9 3.5 25 7-31 6-30 (214)
431 1tf7_A KAIC; homohexamer, hexa 96.3 0.0045 1.5E-07 54.6 5.6 37 6-42 279-315 (525)
432 1r8s_A ADP-ribosylation factor 96.3 0.0026 8.8E-08 46.2 3.5 22 10-31 2-23 (164)
433 3cio_A ETK, tyrosine-protein k 96.3 0.0067 2.3E-07 49.5 6.2 39 6-44 102-141 (299)
434 3cf2_A TER ATPase, transitiona 96.3 0.001 3.5E-08 61.5 1.5 29 7-35 237-265 (806)
435 2afh_E Nitrogenase iron protei 96.3 0.0061 2.1E-07 49.2 6.0 35 9-43 3-37 (289)
436 3fwy_A Light-independent proto 96.3 0.0064 2.2E-07 50.0 6.1 38 7-44 47-84 (314)
437 4bas_A ADP-ribosylation factor 96.3 0.0027 9.2E-08 47.8 3.5 24 7-30 16-39 (199)
438 1u0j_A DNA replication protein 96.3 0.0018 6.1E-08 52.1 2.5 26 9-34 105-130 (267)
439 2a5j_A RAS-related protein RAB 96.3 0.0032 1.1E-07 47.3 3.8 23 8-30 21-43 (191)
440 2b6h_A ADP-ribosylation factor 96.3 0.003 1E-07 47.7 3.7 23 7-29 28-50 (192)
441 3reg_A RHO-like small GTPase; 96.3 0.0029 9.8E-08 47.6 3.6 24 8-31 23-46 (194)
442 3cbq_A GTP-binding protein REM 96.3 0.0023 7.8E-08 48.6 3.0 22 8-29 23-44 (195)
443 1g8p_A Magnesium-chelatase 38 96.3 0.001 3.4E-08 55.1 1.0 24 10-33 47-70 (350)
444 2gf9_A RAS-related protein RAB 96.3 0.0033 1.1E-07 47.1 3.8 22 9-30 23-44 (189)
445 1f6b_A SAR1; gtpases, N-termin 96.3 0.0024 8.4E-08 48.5 3.1 23 8-30 25-47 (198)
446 2cxx_A Probable GTP-binding pr 96.3 0.0022 7.5E-08 47.9 2.8 21 10-30 3-23 (190)
447 2j1l_A RHO-related GTP-binding 96.3 0.0031 1.1E-07 48.5 3.7 24 7-30 33-56 (214)
448 2dpy_A FLII, flagellum-specifi 96.3 0.0029 9.8E-08 54.6 3.8 29 5-33 154-182 (438)
449 2yl4_A ATP-binding cassette SU 96.2 0.0018 6E-08 58.1 2.6 28 6-33 368-395 (595)
450 1ypw_A Transitional endoplasmi 96.2 0.0018 6.3E-08 60.1 2.7 29 6-34 236-264 (806)
451 1wcv_1 SOJ, segregation protei 96.2 0.0041 1.4E-07 49.4 4.4 42 1-44 1-43 (257)
452 2qu8_A Putative nucleolar GTP- 96.2 0.0034 1.2E-07 48.7 3.8 24 7-30 28-51 (228)
453 3qf4_B Uncharacterized ABC tra 96.2 0.002 6.7E-08 57.9 2.7 28 6-33 379-406 (598)
454 2h17_A ADP-ribosylation factor 96.2 0.0026 8.9E-08 47.4 3.0 24 7-30 20-43 (181)
455 2vf7_A UVRA2, excinuclease ABC 96.2 0.0017 6E-08 60.3 2.4 20 6-25 34-53 (842)
456 3lxw_A GTPase IMAP family memb 96.2 0.0031 1.1E-07 49.9 3.6 24 7-30 20-43 (247)
457 3cph_A RAS-related protein SEC 96.2 0.0035 1.2E-07 47.8 3.8 23 8-30 20-42 (213)
458 4a82_A Cystic fibrosis transme 96.2 0.0015 5.3E-08 58.3 1.9 28 6-33 365-392 (578)
459 1tf7_A KAIC; homohexamer, hexa 96.2 0.0028 9.7E-08 55.9 3.6 28 6-33 37-66 (525)
460 3euj_A Chromosome partition pr 96.2 0.0034 1.2E-07 54.7 3.9 26 9-34 30-55 (483)
461 3bk7_A ABC transporter ATP-bin 96.2 0.0027 9.3E-08 57.0 3.4 27 6-32 115-141 (607)
462 3a1s_A Iron(II) transport prot 96.2 0.0031 1.1E-07 50.3 3.5 24 7-30 4-27 (258)
463 3bfv_A CAPA1, CAPB2, membrane 96.2 0.0096 3.3E-07 47.9 6.3 39 6-44 80-119 (271)
464 4gzl_A RAS-related C3 botulinu 96.2 0.0036 1.2E-07 47.7 3.7 24 7-30 29-52 (204)
465 3of5_A Dethiobiotin synthetase 96.2 0.0084 2.9E-07 47.0 5.8 37 7-43 3-40 (228)
466 3pxi_A Negative regulator of g 96.2 0.0066 2.3E-07 55.9 6.0 33 10-42 523-555 (758)
467 1w5s_A Origin recognition comp 96.2 0.0032 1.1E-07 53.2 3.6 28 7-34 49-78 (412)
468 2o52_A RAS-related protein RAB 96.2 0.0034 1.2E-07 47.7 3.4 23 8-30 25-47 (200)
469 2q3h_A RAS homolog gene family 96.2 0.0037 1.3E-07 47.2 3.6 24 7-30 19-42 (201)
470 2obl_A ESCN; ATPase, hydrolase 96.1 0.0036 1.2E-07 52.3 3.8 28 6-33 69-96 (347)
471 3pxi_A Negative regulator of g 96.1 0.0043 1.5E-07 57.1 4.6 27 8-34 201-227 (758)
472 3ozx_A RNAse L inhibitor; ATP 96.1 0.0026 9E-08 56.3 3.1 28 6-33 292-319 (538)
473 2fv8_A H6, RHO-related GTP-bin 96.1 0.0031 1E-07 48.2 3.1 23 8-30 25-47 (207)
474 1ypw_A Transitional endoplasmi 96.1 0.0019 6.7E-08 59.9 2.3 33 7-39 510-542 (806)
475 2gco_A H9, RHO-related GTP-bin 96.1 0.0038 1.3E-07 47.4 3.5 23 8-30 25-47 (201)
476 1ojl_A Transcriptional regulat 96.1 0.003 1E-07 51.7 3.2 34 8-41 25-58 (304)
477 3dz8_A RAS-related protein RAB 96.1 0.0042 1.4E-07 46.6 3.8 23 9-31 24-46 (191)
478 2il1_A RAB12; G-protein, GDP, 96.1 0.0038 1.3E-07 47.0 3.5 22 9-30 27-48 (192)
479 4dzz_A Plasmid partitioning pr 96.1 0.0085 2.9E-07 45.4 5.5 36 9-44 2-38 (206)
480 2ew1_A RAS-related protein RAB 96.1 0.0041 1.4E-07 47.5 3.7 24 8-31 26-49 (201)
481 3t1o_A Gliding protein MGLA; G 96.1 0.0036 1.2E-07 46.8 3.3 25 9-33 15-39 (198)
482 2h57_A ADP-ribosylation factor 96.1 0.003 1E-07 47.4 2.8 25 7-31 20-44 (190)
483 1byi_A Dethiobiotin synthase; 96.1 0.0086 3E-07 46.2 5.6 35 9-43 2-37 (224)
484 3b1v_A Ferrous iron uptake tra 96.1 0.0039 1.3E-07 50.2 3.7 23 8-30 3-25 (272)
485 3qf4_A ABC transporter, ATP-bi 96.1 0.0022 7.6E-08 57.4 2.4 28 6-33 367-394 (587)
486 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0046 1.6E-07 52.0 4.2 24 10-33 25-48 (365)
487 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0057 1.9E-07 56.3 5.2 30 7-36 206-235 (758)
488 1zbd_A Rabphilin-3A; G protein 96.1 0.0041 1.4E-07 47.1 3.6 23 8-30 8-30 (203)
489 3k9g_A PF-32 protein; ssgcid, 96.1 0.0073 2.5E-07 48.1 5.2 38 6-44 25-63 (267)
490 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0034 1.2E-07 55.5 3.6 27 7-33 311-337 (538)
491 1a5t_A Delta prime, HOLB; zinc 96.1 0.0051 1.7E-07 50.9 4.4 28 8-35 24-51 (334)
492 3hu3_A Transitional endoplasmi 96.1 0.0021 7.1E-08 56.3 2.1 27 7-33 237-263 (489)
493 2i1q_A DNA repair and recombin 96.1 0.0039 1.3E-07 51.3 3.6 26 6-31 96-121 (322)
494 3qks_A DNA double-strand break 96.1 0.0061 2.1E-07 46.8 4.4 27 8-34 23-49 (203)
495 2x77_A ADP-ribosylation factor 96.0 0.003 1E-07 47.3 2.6 23 7-29 21-43 (189)
496 3io5_A Recombination and repai 96.0 0.0061 2.1E-07 50.2 4.6 38 6-44 27-66 (333)
497 3bk7_A ABC transporter ATP-bin 96.0 0.0037 1.3E-07 56.1 3.6 28 6-33 380-407 (607)
498 2hup_A RAS-related protein RAB 96.0 0.0046 1.6E-07 47.0 3.7 23 8-30 29-51 (201)
499 3zq6_A Putative arsenical pump 96.0 0.011 3.7E-07 48.8 6.1 35 9-43 15-49 (324)
500 2fna_A Conserved hypothetical 96.0 0.0044 1.5E-07 51.0 3.7 26 9-34 31-56 (357)
No 1
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=100.00 E-value=1.7e-35 Score=232.87 Aligned_cols=191 Identities=23% Similarity=0.328 Sum_probs=166.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-hHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-PTLT 86 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 86 (227)
+++|+|+|++||||||+++.|++.|. .++++..+++|+ +++.|+.+++++.++..++.....++|+++|++++ ..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~-~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~ 79 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI 79 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESST-TCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCC-CChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999996 588999999997 78899999999999888999999999999999976 4789
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHHHHHHhc
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
+++.+|.+||| |||++|+++|++..++++.+|+..+. ...+.||++|||++||+++.+|+
T Consensus 80 p~l~~g~~Vi~-----------------DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri 142 (205)
T 4hlc_A 80 PALKEGKVVLC-----------------DRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERI 142 (205)
T ss_dssp HHHHTTCEEEE-----------------ECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred HHHHcCCEEEe-----------------cCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHH
Confidence 99999999999 99999999999887788888886654 35679999999999999999998
Q ss_pred CCCC---CCcc--cHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 164 GFGD---ERYE--QTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 164 ~~r~---~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
.+|+ ++++ +.++++++++.|..+... .|++||+++++++|.++|.+.|.+.|++
T Consensus 143 ~~r~~~~dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~ 204 (205)
T 4hlc_A 143 IKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 204 (205)
T ss_dssp HC-------CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCcccchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 6553 4455 368999999999998764 6999999999999999999999988764
No 2
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=100.00 E-value=8.3e-35 Score=230.06 Aligned_cols=199 Identities=41% Similarity=0.718 Sum_probs=174.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC-CCCHHHHHHHHHhhhhhhhhH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI-ELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (227)
++|++|+|+|++||||||+++.|++.++. ++..+++|..+++.|+.+++++.++. .+.+..+.++|+++|+++.+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~ 79 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDK 79 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999986 56678888668899999999988754 578889999999999997788
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC--CCChhhhhcccCCCCCCCEEEEe-ecCHHHHHH
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE--GMDISWCFQPEKGLPKPDAVLLF-KLNEEALQR 161 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pd~vi~L-~~~~e~~~~ 161 (227)
|.+++.+|.+||| |||++|+++|+.... +.+..|+..+....+.||++||| ++|++++.+
T Consensus 80 I~paL~~g~~VI~-----------------DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~ 142 (216)
T 3tmk_A 80 IKKDLLEGKNIVM-----------------DRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAE 142 (216)
T ss_dssp HHHHHHTTCEEEE-----------------ESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGG
T ss_pred HHHHHHcCCEEEE-----------------eccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHH
Confidence 9999999999999 999999999997641 35678888887788899999999 999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHHHhh-------CCeEEEc-CCCCHHHHHHHHHHHHHHHhhhcC-CCCCc
Q psy16874 162 RKGFGDERYEQTDFQRKVAENYEKLKD-------NIWIDID-ADKDIDTLGLIVKDIVIDTIKKSQ-FSPLE 224 (227)
Q Consensus 162 R~~~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~Id-~~~s~~~v~~~I~~~i~~~l~~~~-~~~~~ 224 (227)
|+..+++++++.++++++++.|..+.. .++++|| +++++++|.++|.+.|...+.... ++++.
T Consensus 143 R~~~~~dr~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~~~~~~~~~ 214 (216)
T 3tmk_A 143 KSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFS 214 (216)
T ss_dssp CCSSSCCTTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHSCCCTTCCC
T ss_pred HhccCcccccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccc
Confidence 998777888889999999999999864 2799999 999999999999999999998644 55554
No 3
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=100.00 E-value=2.5e-34 Score=227.37 Aligned_cols=194 Identities=21% Similarity=0.302 Sum_probs=171.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC--CCCHHHHHHHHHhhhhhhh-
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI--ELPDQAAHLLFSANRWERE- 82 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~- 82 (227)
++|++|+|+|++||||||+++.|++.+...|+++..+++|. +++.|+.+++++.++. .+.+..+.++|+++|++++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~-~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~ 82 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLA 82 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC-SSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC-CCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998899996 7888999999998764 5788899999999999986
Q ss_pred hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHHHH
Q psy16874 83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEEAL 159 (227)
Q Consensus 83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e~~ 159 (227)
+.+.+++.+|.+||| |||++|+++|+...++++..|+..+. ...+.||++|||++|++++
T Consensus 83 ~~i~p~l~~g~~Vi~-----------------DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~ 145 (213)
T 4edh_A 83 GVIRPALARGAVVLC-----------------DRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIG 145 (213)
T ss_dssp HTHHHHHHTTCEEEE-----------------ESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH
T ss_pred HHHHHHHHCCCEEEE-----------------CccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH
Confidence 578999999999999 99999999999886688888886654 3568999999999999999
Q ss_pred HHhcCCCC--CCccc--HHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 160 QRRKGFGD--ERYEQ--TDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 160 ~~R~~~r~--~~~~~--~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
.+|+..|+ ++++. .++++++.+.|..+... .+++||++++++++.++|.+.|...+..
T Consensus 146 ~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4edh_A 146 LARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER 210 (213)
T ss_dssp HHHHCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 99998764 56664 78999999999988753 6999999999999999999999988754
No 4
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=100.00 E-value=1.8e-34 Score=227.99 Aligned_cols=193 Identities=23% Similarity=0.300 Sum_probs=169.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC-CeEEeeCCCCCCCchHHHHHHHhhc-----CCCCHHHHHHHHHhhhhh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI-PSQFVNFPDRTISTGHIIDEYLRKK-----IELPDQAAHLLFSANRWE 80 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 80 (227)
+|++|+|+|++||||||+++.|++.|...|+ ++..+++|+ ++++|+.+++++..+ ..+.+..+.++|+++|++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~-~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~ 80 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-GTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ 80 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC-CCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999 777789986 788999999998732 457888999999999999
Q ss_pred hhh-HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCH
Q psy16874 81 REP-TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNE 156 (227)
Q Consensus 81 ~~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~ 156 (227)
+.. .|.+++.+|.+||| |||++|+++|++..++++..|+..+. ...+.||++|||++|+
T Consensus 81 ~~~~~i~paL~~g~~VI~-----------------DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~ 143 (213)
T 4tmk_A 81 LVETVIKPALANGTWVIG-----------------DRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTP 143 (213)
T ss_dssp HHHHTHHHHHHTTCEEEE-----------------ECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH
T ss_pred HHHHHHHHHHHCCCEEEE-----------------cCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCH
Confidence 875 79999999999999 99999999999887788888886543 4577999999999999
Q ss_pred HHHHHhcCCCC--CCcc--cHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 157 EALQRRKGFGD--ERYE--QTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 157 e~~~~R~~~r~--~~~~--~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
+++.+|+.+|+ ++++ +.++++++.+.|..+... .+++||+++++++|.++|.+.|...+.+
T Consensus 144 e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4tmk_A 144 EVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 210 (213)
T ss_dssp HHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHCCcEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999986553 4565 488999999999998764 7999999999999999999999988854
No 5
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=1.3e-34 Score=230.70 Aligned_cols=191 Identities=21% Similarity=0.343 Sum_probs=162.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhh
Q psy16874 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN----NIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRW 79 (227)
Q Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
+|.+|++|+|+|++||||||+++.|++.+... |+++..+++|. +++.|+.+++++.++ .+.+..+.++|+++|+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~-~t~~g~~ir~~l~~~-~~~~~~~~llf~a~R~ 98 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG-GTRLGETLREILLNQ-PMDLETEALLMFAGRR 98 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSS-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCC-CChHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999988 99998899995 778899999999887 5688888999999999
Q ss_pred hhhh-HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecC
Q psy16874 80 EREP-TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLN 155 (227)
Q Consensus 80 ~~~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~ 155 (227)
.++. .+.+++.+|.+||| |||++|+++|+...++++.+|+..+. ...+.||++|||++|
T Consensus 99 ~~~~~~i~p~l~~g~~VI~-----------------DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~ 161 (227)
T 3v9p_A 99 EHLALVIEPALARGDWVVS-----------------DRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVP 161 (227)
T ss_dssp HHHHHTHHHHHHTTCEEEE-----------------ECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHcCCEEEE-----------------eccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 9865 79999999999999 99999999999876688888886654 356899999999999
Q ss_pred HHHHHHhcCCCC--CCccc--HHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 156 EEALQRRKGFGD--ERYEQ--TDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 156 ~e~~~~R~~~r~--~~~~~--~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
++++.+|+..|+ ++++. .++++++.+.|+.+... ++++||+++++++|.++|.+.|..
T Consensus 162 ~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 162 PQIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp SSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 999999998764 56764 68999999999988753 699999999999999999998874
No 6
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-34 Score=223.41 Aligned_cols=187 Identities=27% Similarity=0.362 Sum_probs=162.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
|+|+|+|++||||||+++.|++.|...|+++..+++|+ +++.++.+++++.+. ...+....++|+++++.+...+.++
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~-~t~~~~~ir~~l~~~-~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILLEE-EVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CCcHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999997 788889998887765 4577788888999998888889999
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc---cCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP---EKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
+..|.+||| |||++|+++|++...+.+..|+..+ ....+.||++|||++||+++.+|...
T Consensus 79 L~~g~~Vi~-----------------DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~ 141 (197)
T 3hjn_A 79 LSEGYAVLL-----------------DRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGE 141 (197)
T ss_dssp HTTTCEEEE-----------------ESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC--
T ss_pred HHCCCeEEe-----------------cccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcC
Confidence 999999999 9999999999988778887777654 34567899999999999999999764
Q ss_pred CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
.+++++.++++++++.|..++.. .+++||+++++++|.++|.+.|.+.+
T Consensus 142 -~dr~e~~ef~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 142 -LNRFEKREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp --CTTCCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred -cCccccHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 46788889999999999998753 69999999999999999999987544
No 7
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=100.00 E-value=1.8e-33 Score=225.28 Aligned_cols=194 Identities=22% Similarity=0.269 Sum_probs=165.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC-eEEeeCCCCCCCchHHHHHHHhhc---CCCCHHHHHHHHHhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP-SQFVNFPDRTISTGHIIDEYLRKK---IELPDQAAHLLFSANRWER 81 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 81 (227)
++|++|+|+|++||||||+++.|++.+...|++ +..+++|. +++.|+.+++++..+ ..+.+.++.++|+++|+++
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~-~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-GTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC-CCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999 77789996 788999999988632 4578889999999999998
Q ss_pred hh-HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHH
Q psy16874 82 EP-TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEE 157 (227)
Q Consensus 82 ~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e 157 (227)
.. .+.+++.+|.+||| |||++|+++|++..++++..|+..+. ...+.||++|||++|++
T Consensus 104 ~~~~I~paL~~g~~VI~-----------------DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e 166 (236)
T 3lv8_A 104 VENVIKPALARGEWVVG-----------------DRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPK 166 (236)
T ss_dssp HHHTHHHHHHTTCEEEE-----------------ESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHH
T ss_pred HHHHHHHHHHcCCEEEE-----------------eeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence 75 79999999999999 99999999999886688877876543 35689999999999999
Q ss_pred HHHHhcCCCC--CCccc--HHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 158 ALQRRKGFGD--ERYEQ--TDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 158 ~~~~R~~~r~--~~~~~--~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
++.+|+.+|+ ++++. .++++++.+.|..+... .+++||++++++++.++|.+.|...+.+
T Consensus 167 ~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~ 232 (236)
T 3lv8_A 167 LGLERARGRGELDRIEKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQ 232 (236)
T ss_dssp HHHHC-----CCCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999998764 46653 79999999999988753 5999999999999999999999988865
No 8
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=100.00 E-value=3.8e-34 Score=227.09 Aligned_cols=191 Identities=23% Similarity=0.283 Sum_probs=156.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
.+|++|+|+|++||||||+++.|++.+.. .|+++.. +++|+ ++++++.+++++.+...+......++|+++|+++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~-~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~ 97 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG-GTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFV 97 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC-SSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC-CChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999 8999988 88997 788899999988864447888888999999999876
Q ss_pred H-HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc---cCCCCCCCEEEEeecCHHHH
Q psy16874 84 T-LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP---EKGLPKPDAVLLFKLNEEAL 159 (227)
Q Consensus 84 ~-i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pd~vi~L~~~~e~~ 159 (227)
. +.+++.+|.+||| |||++|+++|++..++.+.+|+..+ ... +.||++|||++|++++
T Consensus 98 ~~I~paL~~g~~VI~-----------------DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~ 159 (223)
T 3ld9_A 98 KIIKPSLMQKKIVIC-----------------DRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINES 159 (223)
T ss_dssp HTHHHHHHTTCEEEE-----------------ESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC----
T ss_pred HHHHHHHhcCCeEEE-----------------ccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHH
Confidence 4 9999999999999 9999999999987668888888665 334 8999999999999999
Q ss_pred HHhcCCCCCCccc--HHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874 160 QRRKGFGDERYEQ--TDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKS 218 (227)
Q Consensus 160 ~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~ 218 (227)
.+|+ ++++++. .++++++.+.|..+... ++++||++++++++ ++|.+.|...+...
T Consensus 160 ~~Ri--~rdr~E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~lg~~ 220 (223)
T 3ld9_A 160 LSRS--CKNGYEFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVIKVL 220 (223)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHHHHH
T ss_pred HHHh--ccCccccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHHhhh
Confidence 9999 3456764 89999999999988753 69999999999999 99999999887654
No 9
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.97 E-value=2.2e-29 Score=198.57 Aligned_cols=202 Identities=42% Similarity=0.786 Sum_probs=163.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++|++|+|+|++||||||+++.|++.++..++++..+++|..+.+.+..+++++..+..+.+.....+|.++++.....+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 86 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI 86 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998888875456667778888877666777766667777776666677
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
.+.+..+..|++ |||+++++++...+.+.+.+|+..+....+.||++|||++|++++.+|+.+
T Consensus 87 ~~~l~~~~~vi~-----------------dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r 149 (215)
T 1nn5_A 87 KEKLSQGVTLVV-----------------DRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAF 149 (215)
T ss_dssp HHHHHTTCEEEE-----------------ESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC---
T ss_pred HHHHHCCCEEEE-----------------eCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhcc
Confidence 788888889999 999999999986543556677766655556799999999999999999975
Q ss_pred CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhcCCCCCc
Q psy16874 166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE 224 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~~~~~~ 224 (227)
+.+.++..++.+++...|..+... .+++||++++++++.++|.+.+...+......+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~~~~~~~~ 211 (215)
T 1nn5_A 150 GHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLG 211 (215)
T ss_dssp --CTTCSHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGGGSCCC
T ss_pred CccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhhccCcchh
Confidence 545566667888888888887653 68999999999999999999999988877777765
No 10
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.97 E-value=3.7e-30 Score=205.83 Aligned_cols=193 Identities=22% Similarity=0.313 Sum_probs=160.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-h
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-P 83 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (227)
+.++++|+|+|+|||||||+++.|++.++. ++++...++|. +.+.++.+++++.++..+.+....++|.++|+... +
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~-~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~ 100 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL 100 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT-TCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCC
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC-CCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998 88887788776 66788889999887766788888888998888764 4
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhh---hhcccCCCCCCCEEEEeecCHHHHH
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISW---CFQPEKGLPKPDAVLLFKLNEEALQ 160 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~pd~vi~L~~~~e~~~ 160 (227)
.+.+.+..|..|++ |||++|+++|++..++++..+ +..+....+.||++|||++|++++.
T Consensus 101 ~i~~~l~~g~~Vi~-----------------DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~ 163 (229)
T 4eaq_A 101 KVIPALKEGKVVLC-----------------DRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGR 163 (229)
T ss_dssp CCHHHHHTTCEEEE-----------------ECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHH
T ss_pred HHHHHHHCCCEEEE-----------------CCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHH
Confidence 67888889999999 999999999998766666553 4444455679999999999999999
Q ss_pred HhcCCCC---CCcc--cHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 161 RRKGFGD---ERYE--QTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 161 ~R~~~r~---~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
+|+..|+ ++++ ..++++++.+.|..+... .+++||++++++++.++|.+.|.+.+.
T Consensus 164 ~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 164 ERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp HHHHHC-----CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 9997653 4454 468899999999998764 689999999999999999999998775
No 11
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.97 E-value=6.2e-29 Score=195.76 Aligned_cols=197 Identities=39% Similarity=0.755 Sum_probs=159.3
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhh
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWE 80 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227)
|..++++|++|+|+|+|||||||+++.|++.++..+++++.+++|..+.+.+..+++++..+..+++.....+|..+++.
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWE 82 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 55656678999999999999999999999999999999987888865677788888888777677877777777777776
Q ss_pred hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHH
Q psy16874 81 REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQ 160 (227)
Q Consensus 81 ~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~ 160 (227)
.++.+.+.+..+..|++ |||+.++.++.....+++.+|+..+......||++|||++|++++.
T Consensus 83 ~~~~i~~~l~~~~~vi~-----------------D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~ 145 (212)
T 2wwf_A 83 HMNEIKSLLLKGIWVVC-----------------DRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQ 145 (212)
T ss_dssp THHHHHHHHHHTCEEEE-----------------ECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGG
T ss_pred HHHHHHHHHhCCCEEEE-----------------ecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHH
Confidence 66677788888888999 9999888777654324555777655554568999999999999999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 161 RRKGFGDERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 161 ~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
+|+..|.++++..++.+++...|..+... .+++||+++++++++++|.+.+...
T Consensus 146 ~Rl~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 146 NRSDYGEEIYEKVETQKKIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp GSTTTTSSTTCSHHHHHHHHHHGGGGTTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HhhccCcccccHHHHHHHHHHHHHHHhccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 99976545566677888888888776543 6899999999999999999988655
No 12
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.96 E-value=1.6e-27 Score=186.56 Aligned_cols=196 Identities=41% Similarity=0.728 Sum_probs=155.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++|++|+|+|++||||||+++.|++.+ .|+++..+.+|.++.+.++.+++++.++..+.+....++|.++++.....+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i 79 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFI 79 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999987 345666677775456678888888877666777766777777777666677
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
.+.+..+..|++ |||+++.+++.... +.+.+|+..+....+.||++|||++|++++.+ .+
T Consensus 80 ~~~l~~~~~vi~-----------------Dr~~~s~~~~~~~~-g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~--~R 139 (204)
T 2v54_A 80 QEQLEQGITLIV-----------------DRYAFSGVAYAAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINR--NV 139 (204)
T ss_dssp HHHHHTTCEEEE-----------------ESCHHHHHHHHHHT-TCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT--CC
T ss_pred HHHHHCCCEEEE-----------------ECchhhHHHHHHcc-CCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh--hc
Confidence 788888899999 99999998887654 66667776555555689999999999999988 22
Q ss_pred CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhcCCCCCc
Q psy16874 166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE 224 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~~~~~~ 224 (227)
+.+.++..++++++...|..+... .+++||+++++++++++|.+.+...+....+ +++
T Consensus 140 ~~d~~e~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~~~-~~~ 200 (204)
T 2v54_A 140 GEEIYEDVTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTVTG-PVG 200 (204)
T ss_dssp SSSTTCCSHHHHHHHHHHHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHHHCCS-CCC
T ss_pred CcccccHHHHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccC-Chh
Confidence 224455567888898889887653 6899999999999999999999998887666 665
No 13
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.96 E-value=8.5e-28 Score=187.04 Aligned_cols=188 Identities=27% Similarity=0.358 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
++|+|+|++||||||+++.|++.+...|+++..+++|. +.+.++.+++++.+ ..+.+....+++.++++.++..+.+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~i~~~ 78 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILLE-EEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSC-SSHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCC-CCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999988899998888875 56778888888874 45577778888888888876558888
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc---cCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP---EKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
+..|..|++ |||+++++++.+...+.+..++..+ ....+.||++|||++|++++.+|+..
T Consensus 79 l~~g~~vi~-----------------dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~ 141 (197)
T 2z0h_A 79 LSEGYAVLL-----------------DRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGE 141 (197)
T ss_dssp ----CEEEE-----------------ESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC--
T ss_pred HhCCCEEEE-----------------CCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhc
Confidence 888999999 9999999999877666666666543 33456899999999999999999987
Q ss_pred CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
| +.++..++++++...|..+... .+++||++++++++.++|.+.+...+.
T Consensus 142 R-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 142 L-NRFEKREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTCC--
T ss_pred c-CcccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 6 4565568888888888877642 688999999999999999998875543
No 14
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.94 E-value=5.8e-25 Score=172.74 Aligned_cols=188 Identities=22% Similarity=0.367 Sum_probs=142.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC---CCCHHHHHHHHHhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI---ELPDQAAHLLFSANRWERE 82 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 82 (227)
+++++|+|+|+|||||||+++.|++.++..| ++...++|. ++.+++++..+. .+......+++.+.++...
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 75 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNS-----SDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRY 75 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTC-----CCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCc-----HHHHHHHHhccccccCCCHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999877 776666652 445666666543 3555555556666665543
Q ss_pred -hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874 83 -PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 83 -~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~ 161 (227)
..+.+.+..|..||+ |||+++.++|. ...+.+..|+..+....+.||++|||++|++++.+
T Consensus 76 ~~~i~~~l~~g~~vi~-----------------D~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~ 137 (213)
T 2plr_A 76 ERYILPMLKSGFIVIS-----------------DRYIYTAYARD-SVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALE 137 (213)
T ss_dssp HHTHHHHHHTTCEEEE-----------------ESCHHHHHHHH-HTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHH
T ss_pred HHHHHHHHhCCCEEEE-----------------eCcHhHHHHHH-HhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHH
Confidence 356677788889999 99999988887 33466667777666555679999999999999999
Q ss_pred hcC-CCC--CC-------------ccc-HHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 162 RKG-FGD--ER-------------YEQ-TDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 162 R~~-~r~--~~-------------~~~-~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
|+. .|+ +. ++. .++.+++...|..+... .+++||++++++++.++|.+.+...+..
T Consensus 138 Rl~~~R~~~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~~~~ 211 (213)
T 2plr_A 138 RIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGELIDN 211 (213)
T ss_dssp HHHHTTCCCCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence 987 654 23 222 36777778788877643 6899999999999999999999877653
No 15
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.93 E-value=1.4e-24 Score=168.29 Aligned_cols=187 Identities=27% Similarity=0.397 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-hHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-PTLTK 87 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~ 87 (227)
++|+|+|+|||||||+++.|++.++..|+++...++|. +.+.++.+++++.++ .+.......++...+...+ ..+++
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~-~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~i~~ 78 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG-GTKVGEVLREILLTE-ELDERTELLLFEASRSKLIEEKIIP 78 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC-CCchHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999988888888887775 456677778877765 4455544455555565554 46777
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
.+..+..|++ |||+++++++.+.....+..++..+. .....||++|||++|++++.+|+.
T Consensus 79 ~l~~~~~vi~-----------------dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~ 141 (195)
T 2pbr_A 79 DLKRDKVVIL-----------------DRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLK 141 (195)
T ss_dssp HHHTTCEEEE-----------------ESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred HHhCCCEEEE-----------------CcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhh
Confidence 8888999999 99999988887554455544554322 223379999999999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 165 FGDERYEQTDFQRKVAENYEKLKD--NIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 165 ~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
+| +.++..++++++...|+.+.. ..+++||++++++++.++|.+.+.+.+
T Consensus 142 ~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~l 193 (195)
T 2pbr_A 142 EK-NRFENKEFLEKVRKGFLELAKEEENVVVIDASGEEEEVFKEILRALSGVL 193 (195)
T ss_dssp TT-TCCCCHHHHHHHHHHHHHHHHHSTTEEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred cc-CccchHHHHHHHHHHHHHHHhhCCCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 53 445567788888888887762 268999999999999999999887654
No 16
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.90 E-value=3.7e-24 Score=169.06 Aligned_cols=174 Identities=19% Similarity=0.170 Sum_probs=122.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhh
Q psy16874 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWER 81 (227)
Q Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
+.+++++|+|.|||||||||+|+.|++.++..++++.. +++ ...+++.|..++.++..|..+++....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~---------- 94 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL---------- 94 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHH----------
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHH----------
Confidence 44678999999999999999999999999998988855 554 234677889999999999999997766
Q ss_pred hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874 82 EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 82 ~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~ 161 (227)
..+.+.+.+. .+..+|||+| +||++..++ ..+ ......|+++|+|++|.+++.+
T Consensus 95 -~lv~~~l~~~-------------~~~~~g~ilD-----GfPRt~~Qa----~~l---~~~~~~~~~vi~l~v~~e~~~~ 148 (217)
T 3umf_A 95 -ALLKEAMIKL-------------VDKNCHFLID-----GYPRELDQG----IKF---EKEVCPCLCVINFDVSEEVMRK 148 (217)
T ss_dssp -HHHHHHHHHH-------------TTTCSEEEEE-----TBCSSHHHH----HHH---HHHTCCCSEEEEEECCHHHHHH
T ss_pred -HHHHHHHhhc-------------cccccCcccc-----cCCCcHHHH----HHH---HHhCCccCEEEeccCCHHHHHH
Confidence 3333333221 1233456668 888877662 222 2233478999999999999999
Q ss_pred hcCCCCCCcc----cHHHHHHHHHHHHHHh-------hC--CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 162 RKGFGDERYE----QTDFQRKVAENYEKLK-------DN--IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 162 R~~~r~~~~~----~~~~~~~~~~~~~~~~-------~~--~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
|+..|..... +.+.+.+-.+.|.+.. .. .++.||+++++++|+++|.+.|++
T Consensus 149 Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 149 RLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 9987643221 1233333233444332 11 689999999999999999998874
No 17
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.86 E-value=4e-22 Score=156.52 Aligned_cols=167 Identities=22% Similarity=0.240 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
|+|+|.|||||||||+|+.|+++++..|+++.. +++. ..+++.|..++.++.+|..+++.... ..+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~-----------~lv~ 69 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII-----------ALIE 69 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHH-----------HHHH
Confidence 579999999999999999999999998888755 4431 22567788889999999999997766 4444
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
+.+... +|||+| |||++..++ ..+.. +......++.+|+|++|.+++.+|+..
T Consensus 70 ~~l~~~-----------------~~~ilD-----GfPRt~~Qa----~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~ 123 (206)
T 3sr0_A 70 EVFPKH-----------------GNVIFD-----GFPRTVKQA----EALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123 (206)
T ss_dssp HHCCSS-----------------SCEEEE-----SCCCSHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT
T ss_pred HhhccC-----------------CceEec-----CCchhHHHH----HHHHhhHHHhccccceeeecCCCHHHHHHHHhC
Confidence 444332 345557 889887763 33322 233455799999999999999999865
Q ss_pred CC--------------------CCcc----cHHHHHHHHHHHHHHhh-------C--CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 166 GD--------------------ERYE----QTDFQRKVAENYEKLKD-------N--IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 166 r~--------------------~~~~----~~~~~~~~~~~~~~~~~-------~--~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
|. .... +.+..++-.+.|.+... . .++.||+++++++|+++|.++|.
T Consensus 124 R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp EEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred CccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 41 0111 13333333334444322 1 68899999999999999999885
No 18
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.85 E-value=5.1e-23 Score=167.52 Aligned_cols=191 Identities=13% Similarity=0.093 Sum_probs=116.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCC-----------------eEEeeCCCCCCCchHHHHHHHhhcCCCC
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIP-----------------SQFVNFPDRTISTGHIIDEYLRKKIELP 66 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (227)
..++++|+|+|++||||||+++.|++.+.. ..++ +...++|. +.+ ....++..+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~-g~~---~~~~~~~~~~~~~ 96 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKN-GGN---VLQMMYEKPERWS 96 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------C-CCC---HHHHHHHCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhcccccccccccccccccc-CCc---hHHHHHhCchhcc
Confidence 356889999999999999999999998742 1110 11122332 222 2223333221111
Q ss_pred HHHHHHH-HHhhhhh------hh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCC-----h
Q psy16874 67 DQAAHLL-FSANRWE------RE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMD-----I 133 (227)
Q Consensus 67 ~~~~~~~-~~~~~~~------~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~-----~ 133 (227)
......+ +.+.+.. ++ ..+.+.+..|.+|++ |||++++++|.....+.. .
T Consensus 97 ~~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~-----------------Dry~~s~~~y~~~~~~~~e~~~~~ 159 (263)
T 1p5z_B 97 FTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYS-----------------DRYIFASNLYESECMNETEWTIYQ 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHH-----------------HHHTHHHHHHHTTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceee-----------------cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1111111 3222222 11 122233344555555 999999999876643322 3
Q ss_pred hhhhcccCC---CCCCCEEEEeecCHHHHHHhcCCCCCCc---ccHHHHHHHHHHHHHHh-------------hCCeEEE
Q psy16874 134 SWCFQPEKG---LPKPDAVLLFKLNEEALQRRKGFGDERY---EQTDFQRKVAENYEKLK-------------DNIWIDI 194 (227)
Q Consensus 134 ~~~~~~~~~---~~~pd~vi~L~~~~e~~~~R~~~r~~~~---~~~~~~~~~~~~~~~~~-------------~~~~~~I 194 (227)
.|+..+... .+.||++|||++|++++.+|+..|+... ...++++++...|+.+. ..++++|
T Consensus 160 ~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~I 239 (263)
T 1p5z_B 160 DWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTL 239 (263)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEE
T ss_pred HHHHHHHHhhhccCCCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEE
Confidence 455433322 2479999999999999999986543322 34788888888888762 1268999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q psy16874 195 DADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 195 d~~~s~~~v~~~I~~~i~~~l~ 216 (227)
|++++++++.++|.+.|...+.
T Consensus 240 d~~~~~eev~~~I~~~l~~~l~ 261 (263)
T 1p5z_B 240 DVNEDFKDKYESLVEKVKEFLS 261 (263)
T ss_dssp ECCSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987764
No 19
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.84 E-value=9.1e-21 Score=143.97 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
++|+|+|++||||||+++.|++.++...++.+.+..+. . .+..++ . ....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~-----~-~~~~~~-----------------------~-~~~~ 51 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAK-----S-GNEKLF-----------------------E-HFNK 51 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHT-----T-CHHHHH-----------------------H-HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccch-----h-HHHHHH-----------------------H-HHHH
Confidence 47999999999999999999999875433221111000 0 000000 1 1123
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC---CCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE---GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
+..+..+++ ||+..++.++..... .....+...+....+.|+++|||++|++++.+|+..
T Consensus 52 l~~~~~vi~-----------------dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~ 114 (173)
T 3kb2_A 52 LADEDNVII-----------------DRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRV 114 (173)
T ss_dssp HTTCCSEEE-----------------ESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHH
T ss_pred HHhCCCeEE-----------------eeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHh
Confidence 456777888 999999888864321 122234333333445799999999999999999976
Q ss_pred CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874 166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDAD-KDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~-~s~~~v~~~I~~~i~~~l 215 (227)
|++.....++++++.+.|+..... .+++||++ .+++++.++|.+.+....
T Consensus 115 r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 115 RGDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp HSCSCCCHHHHHHHHHHHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred cCCcchhhhHHHHHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 655555567888899999887654 68999999 599999999999888644
No 20
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.83 E-value=7.8e-23 Score=160.96 Aligned_cols=184 Identities=28% Similarity=0.375 Sum_probs=131.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCc-hHHHHHHHhhc-C--CCCHHHHHHHHHhhhhhhhhH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST-GHIIDEYLRKK-I--ELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~ 84 (227)
++|+|+|++||||||+++.|++.++..|+++..+++|..+.+. ++.++.++... . ........+++.+.++.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT 80 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHH
Confidence 4799999999999999999999999888888777766433333 55555554321 0 114555666777777766556
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC-----CCChhhhhccc---CCCCCCCEEEEeecCH
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE-----GMDISWCFQPE---KGLPKPDAVLLFKLNE 156 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~pd~vi~L~~~~ 156 (227)
+.+.+..+.+|++ |||+++.++|+.... .....|+..+. ...+.||++|||++|+
T Consensus 81 i~~~l~~g~~vi~-----------------D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~ 143 (214)
T 1gtv_A 81 IQGLCRGYDVVIL-----------------DRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSA 143 (214)
T ss_dssp HHHEEEEEEEEEE-----------------EEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEH
T ss_pred HHHHhhCCCEEEE-----------------CCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCH
Confidence 7777778889999 999999888765421 01124444332 2335799999999999
Q ss_pred HHHHHhcCCCC--------CCccc-HHHHHHHHHHHHHHhhC----CeEEEcCCCCHHHHHHHHHH
Q psy16874 157 EALQRRKGFGD--------ERYEQ-TDFQRKVAENYEKLKDN----IWIDIDADKDIDTLGLIVKD 209 (227)
Q Consensus 157 e~~~~R~~~r~--------~~~~~-~~~~~~~~~~~~~~~~~----~~~~Id~~~s~~~v~~~I~~ 209 (227)
+++.+|+..|. +.++. .++++++...|..+... .+++||++++++++.++|.+
T Consensus 144 ~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 144 ELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp HHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred HHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence 99999987542 22332 68889999899887642 57999999999998887754
No 21
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.83 E-value=5.2e-21 Score=148.37 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=108.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE 82 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227)
++++++|+|+|+|||||||+++.|++.++..+++.+. ++. +..+.+.+..+++++.++..++........ .
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-------~ 78 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDML-------R 78 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHH-------H
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHH-------H
Confidence 4578899999999999999999999999765554433 221 112445677777777766555543322111 1
Q ss_pred hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
..+.+.+..|..+|+ |+|... . .+...+......|+++|||++|++++.+|
T Consensus 79 ~~i~~~~~~~~~vi~-----------------d~~~~~-----~-------~~~~~~~~~~~~~~~vi~l~~~~e~~~~R 129 (196)
T 2c95_A 79 DAMVAKVNTSKGFLI-----------------DGYPRE-----V-------QQGEEFERRIGQPTLLLYVDAGPETMTQR 129 (196)
T ss_dssp HHHHHHTTTCSCEEE-----------------ESCCCS-----H-------HHHHHHHHHTCCCSEEEEEECCHHHHHHH
T ss_pred HHHHhccccCCcEEE-----------------eCCCCC-----H-------HHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 234444445666666 854221 1 11211111124689999999999999999
Q ss_pred cCCCC---CCcc-c-HHHHHHHHHHHHHH-------h-hCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 163 KGFGD---ERYE-Q-TDFQRKVAENYEKL-------K-DNIWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 163 ~~~r~---~~~~-~-~~~~~~~~~~~~~~-------~-~~~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
+..|+ ++++ . ..+.+++...+... . ...+++||+++++++++++|.+.+...
T Consensus 130 ~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 130 LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 86542 2332 2 33444554433322 1 124678999999999999999988764
No 22
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.83 E-value=4.4e-21 Score=160.12 Aligned_cols=165 Identities=17% Similarity=0.135 Sum_probs=113.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC--CCCch-HHHHHHHhh-----cCCCCHH-HH-----H
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR--TISTG-HIIDEYLRK-----KIELPDQ-AA-----H 71 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~-----~~~~~~~-~~-----~ 71 (227)
+++++|+|+|++||||||+++.|+++++..+ .+..++||.. +...+ +.+++++.+ ...+... .. .
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~~~-~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~l 83 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHY 83 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccCC-cEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHHH
Confidence 4689999999999999999999999998743 5777888852 24445 667777641 2334443 11 1
Q ss_pred -HHHH---hhhhhhhhH-H-----HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhc----cCCCChhhhh
Q psy16874 72 -LLFS---ANRWEREPT-L-----TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA----KEGMDISWCF 137 (227)
Q Consensus 72 -~~~~---~~~~~~~~~-i-----~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~----~~~~~~~~~~ 137 (227)
++|+ +.++++++. + .+++..|.+||+ |||++|+.++... ..+++...+.
T Consensus 84 QLlf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~-----------------DR~~~Ss~a~f~~~~yq~g~l~~~~i~ 146 (334)
T 1p6x_A 84 QSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVF-----------------DRHPVASTVCFPAARYLLGDMSMCALM 146 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEE-----------------ESCTHHHHTHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEE-----------------eCChHHHHHHHHHHHHhcCCCCHHHHH
Confidence 2333 245555432 2 256667888888 9999999874332 1245555554
Q ss_pred cccC---CCCCCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874 138 QPEK---GLPKPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD 188 (227)
Q Consensus 138 ~~~~---~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~ 188 (227)
.+.. ..+.||++|||++|++++.+|+.+|+...+ +.+|++++++.|..+..
T Consensus 147 ~l~~~~~~~~~PDLtIyLd~~pe~~l~RI~~RgR~~Eri~~eyl~~vr~~Y~~l~~ 202 (334)
T 1p6x_A 147 AMVATLPREPQGGNIVVTTLNVEEHIRRLRTRARIGEQIDITLIATLRNVYFMLVN 202 (334)
T ss_dssp HHHTTCCCCCTTEEEEEEECCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCCEEEEEECCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 4332 346799999999999999999865432222 57999999999998874
No 23
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.83 E-value=3.6e-22 Score=159.45 Aligned_cols=189 Identities=15% Similarity=0.099 Sum_probs=100.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC--CCchHHHHHHH-hhcCCCCHHHHHHHHHhhhhhh
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT--ISTGHIIDEYL-RKKIELPDQAAHLLFSANRWER 81 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
.++|.+|+|+|++||||||+++.|+.. +.++....+|... ...+..+++.+ .....+........+...+..+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~ 92 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSH 92 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHH
Confidence 356889999999999999999999886 4456666655210 11111222211 1100000000000011111111
Q ss_pred h-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc--------CCCCCCCEEEEe
Q psy16874 82 E-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE--------KGLPKPDAVLLF 152 (227)
Q Consensus 82 ~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~pd~vi~L 152 (227)
. ..+.+.+..+.. ++.|||++++.+|+.. +++..++..+. ...+.||++|||
T Consensus 93 ~~~~i~~~l~~~r~-----------------v~~dry~~s~~ayq~~--~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~L 153 (230)
T 2vp4_A 93 TAPTNKKLKIMERS-----------------IFSARYCFVENMRRNG--SLEQGMYNTLEEWYKFIEESIHVQADLIIYL 153 (230)
T ss_dssp HCCCCSSEEEEESC-----------------HHHHHHTHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEE
T ss_pred HhccccCceeecCC-----------------ccccHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 0 011112222333 4449999999999863 55554443221 135689999999
Q ss_pred ecCHHHHHHhcCCCCCC---cccHHHHHHHHHHHHHHhh-----C--CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 153 KLNEEALQRRKGFGDER---YEQTDFQRKVAENYEKLKD-----N--IWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 153 ~~~~e~~~~R~~~r~~~---~~~~~~~~~~~~~~~~~~~-----~--~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
++|++++.+|+.+|+.. .++.++++++...|+++.. . ++++||++++++++.++|.+.+...+.
T Consensus 154 d~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~~ 227 (230)
T 2vp4_A 154 RTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFD 227 (230)
T ss_dssp ECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC------------------
T ss_pred eCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 99999999998654322 2345899999999998853 2 589999999999999999999876654
No 24
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.81 E-value=8.8e-21 Score=150.35 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=103.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
..|-..|+|+|||||||+++.|++.++..+++++. +++ ...+++.|..+++++.++..+++.... ..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~-----------~l 75 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLII-----------GL 75 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHH-----------HH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHH-----------HH
Confidence 35678999999999999999999999998888754 554 223678899999999999888987766 34
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
+.+.+.+. .+.+|||+| +||++..++ ..+ ......||++|+|++|++++.+|+.
T Consensus 76 l~~~l~~~--------------~~~~g~ILD-----GfPRt~~Qa----~~L---~~~~~~~d~VI~Ldvp~e~l~~Rl~ 129 (230)
T 3gmt_A 76 VKERLKEA--------------DCANGYLFD-----GFPRTIAQA----DAM---KEAGVAIDYVLEIDVPFSEIIERMS 129 (230)
T ss_dssp HHHHHHSG--------------GGTTCEEEE-----SCCCSHHHH----HHH---HHTTCCCSEEEEECCCHHHHHHHHH
T ss_pred HHHHHhCc--------------ccCCCeEec-----CCCCcHHHH----HHH---HHhCCCccEEEEEeCCHHHHHHHHH
Confidence 44444431 234577778 777765542 222 2334578999999999999999996
Q ss_pred CCC---------------------------C---Ccc-cHHHH-----------HHHHHHHHHHh---------hCCeEE
Q psy16874 165 FGD---------------------------E---RYE-QTDFQ-----------RKVAENYEKLK---------DNIWID 193 (227)
Q Consensus 165 ~r~---------------------------~---~~~-~~~~~-----------~~~~~~~~~~~---------~~~~~~ 193 (227)
.|. + +.. +.+.+ ..+.+.|+... ...++.
T Consensus 130 ~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~ 209 (230)
T 3gmt_A 130 GRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRK 209 (230)
T ss_dssp TEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEE
T ss_pred cCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEE
Confidence 541 0 111 12222 22233555431 025899
Q ss_pred EcCCCCHHHHHHHHHHHHH
Q psy16874 194 IDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 194 Id~~~s~~~v~~~I~~~i~ 212 (227)
||+++++++|+++|.++|.
T Consensus 210 idg~~~~~eV~~~i~~~l~ 228 (230)
T 3gmt_A 210 ISGLGAVEEIRARVRRAQV 228 (230)
T ss_dssp ECC----------------
T ss_pred EECCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 25
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.81 E-value=1.4e-19 Score=151.30 Aligned_cols=164 Identities=14% Similarity=0.024 Sum_probs=113.4
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHHHHHhCCCCeEEeeCCCCC--CCch-HHHHHHHhh-----cCCCCHH------HH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQA-KKLVDYLNKNNIPSQFVNFPDRT--ISTG-HIIDEYLRK-----KIELPDQ------AA 70 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~-~~L~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-----~~~~~~~------~~ 70 (227)
.++++|+|+|++||||||++ +.|++.++..+ .+..++||... ...+ +.++.++.. ...+... ..
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g-~vv~trEPgg~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~~e 88 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN-RILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAH 88 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG-GEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCccccCcccHHHHHHHHhchhhhcccccchhhhhHHHHH
Confidence 56789999999999999999 99999988766 37779998521 4556 677777753 3344543 33
Q ss_pred HHHHHhhhhhhhh-HHH------------HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhcc----CCCCh
Q psy16874 71 HLLFSANRWEREP-TLT------------KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK----EGMDI 133 (227)
Q Consensus 71 ~~~~~~~~~~~~~-~i~------------~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~----~~~~~ 133 (227)
.+++.+.+..+.. .+. +.+..+.+||+ |||++|+.++.... .+++.
T Consensus 89 ~ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~-----------------DR~~~Ss~a~f~~~r~~~g~l~~ 151 (341)
T 1osn_A 89 FQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLS-----------------DRHPIASTICFPLSRYLVGDMSP 151 (341)
T ss_dssp HHHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEE-----------------ESCTHHHHTHHHHHHHHHTSSCG
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEE-----------------eCCccHHHHHHHhhhhhcCCCCH
Confidence 3344433333322 222 23456677888 99999998776543 35655
Q ss_pred hhhhccc---CCCCCCCEEEEeecCHHHHHHhcCCCC---CCcccHHHHHHHHHHHHHHhh
Q psy16874 134 SWCFQPE---KGLPKPDAVLLFKLNEEALQRRKGFGD---ERYEQTDFQRKVAENYEKLKD 188 (227)
Q Consensus 134 ~~~~~~~---~~~~~pd~vi~L~~~~e~~~~R~~~r~---~~~~~~~~~~~~~~~~~~~~~ 188 (227)
..+..+. .....||++|||++|+++..+|+.+|+ +.++ .+|++++++.|..+..
T Consensus 152 ~~~~~L~~~~~~~~~PDltI~Ld~~pe~~l~RI~~RgR~~Erie-~~yl~rvr~~Y~~l~~ 211 (341)
T 1osn_A 152 AALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVN-LPFVMVLRNVYIMLIN 211 (341)
T ss_dssp GGHHHHHTTCCCCCSCCEEEEEECCHHHHHHHCC------CCCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCeEEEEeCCHHHHHHHHHhhCCCcccCC-HHHHHHHHHHHHHHHH
Confidence 5554433 344579999999999999999997664 3333 7999999999988865
No 26
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=140.54 Aligned_cols=174 Identities=13% Similarity=0.145 Sum_probs=108.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+.+++|+|+|+|||||||+++.|++.++..+++++. ++. +..+.+.+..+++++.++...+........ .+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-------~~ 82 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELL-------KE 82 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHH-------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHH-------HH
Confidence 346799999999999999999999999765544433 121 112344566677777766655554322111 12
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
.+.+.+..+..+|+ |++..+.... ..+ ....+.||++|||++|++++.+|+
T Consensus 83 ~i~~~~~~~~~vi~-----------------dg~~~~~~~~---------~~l---~~~~~~~~~~i~l~~~~~~~~~R~ 133 (199)
T 2bwj_A 83 AMVASLGDTRGFLI-----------------DGYPREVKQG---------EEF---GRRIGDPQLVICMDCSADTMTNRL 133 (199)
T ss_dssp HHHHHTTSCSCEEE-----------------ETCCSSHHHH---------HHH---HHHTCCCSEEEEEECCHHHHHHHH
T ss_pred HHhcccccCccEEE-----------------eCCCCCHHHH---------HHH---HHhcCCCCEEEEEECCHHHHHHHH
Confidence 33444445666777 8654432110 111 112236899999999999999999
Q ss_pred CCCCC---Cccc--HHHHHHHHHHHHHHh------h--CCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 164 GFGDE---RYEQ--TDFQRKVAENYEKLK------D--NIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 164 ~~r~~---~~~~--~~~~~~~~~~~~~~~------~--~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
..|.. ..++ ..+.+++...+.... . ..+++||+++++++++++|.+.+...+
T Consensus 134 ~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~~ 198 (199)
T 2bwj_A 134 LQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF 198 (199)
T ss_dssp HHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 76532 2222 344455444333221 1 145899999999999999999887653
No 27
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.80 E-value=2.7e-19 Score=143.94 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=112.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
++|++|+|+|+|||||||+++.|++.++..+++++. +++ ...+.+.+..+++++.++..+++.... .
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~ 95 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL-----------S 95 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHH-----------H
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHH-----------H
Confidence 568999999999999999999999999776666644 443 233667788888888888877775544 2
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
.+...+... ..++++|+|. +++...+. ..+.. +......||.+|+|++|++++.+|
T Consensus 96 ~~~~~l~~~--------------~~~~~~ildg-----~p~~~~q~----~~l~~~l~~~~~~~d~vi~l~~p~e~~~~R 152 (243)
T 3tlx_A 96 LVDEKLKTP--------------QCKKGFILDG-----YPRNVKQA----EDLNKLLQKNQTKLDGVFYFNVPDEVLVNR 152 (243)
T ss_dssp HHHHHTTSG--------------GGSSEEEEES-----CCCSHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred HHHHHHhcc--------------cccCCEEecC-----CCCcHHHH----HHHHHHHHHcCCCCceEEEEeCCHHHHHHH
Confidence 333333321 1234455584 44333221 12211 122334789999999999999999
Q ss_pred cCCCCC------------------------------Cc-cc-HHHHHHHHHHHHHHh------h--CCeEEEcCCCCHHH
Q psy16874 163 KGFGDE------------------------------RY-EQ-TDFQRKVAENYEKLK------D--NIWIDIDADKDIDT 202 (227)
Q Consensus 163 ~~~r~~------------------------------~~-~~-~~~~~~~~~~~~~~~------~--~~~~~Id~~~s~~~ 202 (227)
+..|.. +. .+ ....+++...++... . ..++.||+++++++
T Consensus 153 l~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~ 232 (243)
T 3tlx_A 153 ISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPAND 232 (243)
T ss_dssp HHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHH
T ss_pred HHcCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 975420 00 12 233344443333221 1 15889999999999
Q ss_pred HHHHHHHHHH
Q psy16874 203 LGLIVKDIVI 212 (227)
Q Consensus 203 v~~~I~~~i~ 212 (227)
|+++|.++|.
T Consensus 233 v~~~i~~~l~ 242 (243)
T 3tlx_A 233 LEKKISQHID 242 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998875
No 28
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.79 E-value=7.6e-21 Score=152.68 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=109.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCC--------------CchH-HHHHHHhhcCCCCHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTI--------------STGH-IIDEYLRKKIELPDQAAH 71 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~ 71 (227)
+|++|+|+|++||||||+++.|++.++. +..+.+|.... ..+. .+..++.++.. ......
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~----~~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 75 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE----WHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPAR-WSYTFQ 75 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTT----SEEECCCGGGTSCCC------------CCCHHHHHHHSHHH-HHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCC----CeeeecchhhhccccccccccccccccCCchHHHHHhCccc-chhHHH
Confidence 4789999999999999999999998852 23455553211 0121 22333322110 000111
Q ss_pred HHHHhhhhhhh-hHHHHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC-C----CChhhhhcccCCC-
Q psy16874 72 LLFSANRWERE-PTLTKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE-G----MDISWCFQPEKGL- 143 (227)
Q Consensus 72 ~~~~~~~~~~~-~~i~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~-~----~~~~~~~~~~~~~- 143 (227)
..+...++... ......+ .....++. .+..++.|||+++..+|+.... + ....|+..+....
T Consensus 76 ~~~ll~r~~~~~~~~~~~~~~~~~~~l~----------~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~ 145 (241)
T 2ocp_A 76 TFSFLSRLKVQLEPFPEKLLQARKPVQI----------FERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFA 145 (241)
T ss_dssp HHHHHHHHHHHHSCCCHHHHSCSSCEEE----------EESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCceEe----------eeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 11111111110 0000000 00111111 2334455999999888765431 1 1123343332222
Q ss_pred --CCCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhh-------------CCeEEEcCCCCHHHHHH
Q psy16874 144 --PKPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLKD-------------NIWIDIDADKDIDTLGL 205 (227)
Q Consensus 144 --~~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~-------------~~~~~Id~~~s~~~v~~ 205 (227)
+.||++|||++|++++.+|+..|+...+ ..++++++...|+.+.. .++++||++++++++.+
T Consensus 146 ~~~~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~ 225 (241)
T 2ocp_A 146 SRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVT 225 (241)
T ss_dssp HHHCCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHH
T ss_pred cccCCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHH
Confidence 3799999999999999999866543333 37899999999998642 27999999999888766
Q ss_pred HHHHHHHH
Q psy16874 206 IVKDIVID 213 (227)
Q Consensus 206 ~I~~~i~~ 213 (227)
.+..++..
T Consensus 226 ~i~~i~~~ 233 (241)
T 2ocp_A 226 KQEDLMRE 233 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
No 29
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.79 E-value=3.2e-19 Score=141.36 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=110.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+++++|+|+|+|||||||+++.|++.++..+++++. ++. +..+.+.|..+++++.++...++.....+.. .+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~-~~----- 76 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVK-ER----- 76 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHH-HH-----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHH-HH-----
Confidence 457889999999999999999999999987777644 332 2224556777888887776666644332111 11
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
...+....+. +|+ | ++++.. ..+..+......||++|||++|++++.+|+
T Consensus 77 ~~~~~~~~~~-~vi-----------------d-----g~~~~~-------~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~ 126 (222)
T 1zak_A 77 LRQPDAQENG-WLL-----------------D-----GYPRSY-------SQAMALETLEIRPDTFILLDVPDELLVERV 126 (222)
T ss_dssp HHSHHHHHTC-EEE-----------------E-----SCCCSH-------HHHHHHHTTTCCCSEEEEEECCHHHHHHHH
T ss_pred HhhccccCCc-EEE-----------------E-----CCCCCH-------HHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence 1111122232 223 6 333221 111222233457899999999999999998
Q ss_pred CCCCC----------------------Ccc-----c-HHHHHHHHHHHH---HHhh---CCeEEEcCCCCHHHHHHHHHH
Q psy16874 164 GFGDE----------------------RYE-----Q-TDFQRKVAENYE---KLKD---NIWIDIDADKDIDTLGLIVKD 209 (227)
Q Consensus 164 ~~r~~----------------------~~~-----~-~~~~~~~~~~~~---~~~~---~~~~~Id~~~s~~~v~~~I~~ 209 (227)
..|.. .+. . .....++...|. .+.. ..+++||+++++++++++|.+
T Consensus 127 ~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~ 206 (222)
T 1zak_A 127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDE 206 (222)
T ss_dssp TTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHH
T ss_pred HcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHH
Confidence 65320 111 1 223334444444 2221 258899999999999999999
Q ss_pred HHHHHhhhc
Q psy16874 210 IVIDTIKKS 218 (227)
Q Consensus 210 ~i~~~l~~~ 218 (227)
.|...+.+.
T Consensus 207 ~l~~~l~~~ 215 (222)
T 1zak_A 207 LLGSILEKK 215 (222)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhcccc
Confidence 998877653
No 30
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.79 E-value=1.1e-17 Score=129.09 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHH-hhc--------CCCCHH--HHHHHHHhh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYL-RKK--------IELPDQ--AAHLLFSAN 77 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~--~~~~~~~~~ 77 (227)
++|+|+|+|||||||+++.|++.++..++++.++. .++.+.+.. ..+ ..+... ...+.+++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN-------YGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAA- 73 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE-------HHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE-------CChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHH-
Confidence 57999999999999999999999998888876663 123332222 111 112222 22222222
Q ss_pred hhhhhhHHHHHH--HcCCEEEEecccccccccCCCCCCCCcccchhhhhh-hccCCCChhhhhcccCCCCCCCEEEEeec
Q psy16874 78 RWEREPTLTKLI--EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS-AAKEGMDISWCFQPEKGLPKPDAVLLFKL 154 (227)
Q Consensus 78 ~~~~~~~i~~~~--~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pd~vi~L~~ 154 (227)
..+.+.+ ..+..||+ |+| +...++ ....+++..++..+ .|+++|||++
T Consensus 74 -----~~i~~~l~~~~~~~vi~-----------------d~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~vi~l~~ 124 (194)
T 1nks_A 74 -----KGIAEEARAGGEGYLFI-----------------DTH--AVIRTPSGYLPGLPSYVITEI-----NPSVIFLLEA 124 (194)
T ss_dssp -----HHHHHHHHHTCSSEEEE-----------------EEC--SEEEETTEEEESSCHHHHHHH-----CCSEEEEEEC
T ss_pred -----HHHHHHhhccCCCEEEE-----------------CCc--hhhccccccccCCCHHHHHhc-----CCCEEEEEeC
Confidence 2355555 67888888 987 222332 11123444555431 4899999999
Q ss_pred CHHHHHHh-cCC--CC--CCcc--cHHHHHHHHHHHHHHhh----CCeEEE-cCCCCHHHHHHHHHHHH
Q psy16874 155 NEEALQRR-KGF--GD--ERYE--QTDFQRKVAENYEKLKD----NIWIDI-DADKDIDTLGLIVKDIV 211 (227)
Q Consensus 155 ~~e~~~~R-~~~--r~--~~~~--~~~~~~~~~~~~~~~~~----~~~~~I-d~~~s~~~v~~~I~~~i 211 (227)
|++++.+| +.. |+ +... ..++.+++...|..... ..+++| |+++++++++++|.+.|
T Consensus 125 ~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 125 DPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp CHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 99998866 654 43 2222 23556677777766642 267899 99999999999988765
No 31
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.79 E-value=7.7e-19 Score=136.81 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL 88 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (227)
++|+|+|++||||||+++.|++.++. ..+.+|..+... ++.++.++..+ .......+.+.+... +.+.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~-----~~~~e~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~r~~~---~~~~ 68 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGY-----EIFKEPVEENPY---FEQYYKDLKKT-VFKMQIYMLTARSKQ---LKQA 68 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCC-----EEECCCGGGCTT---HHHHTTCHHHH-HHHHHHHHHHHHHHH---HC--
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCC-----cEEcccccccHH---HHHHHhCcccc-chhHHHHHHHHHHHH---HHHh
Confidence 47999999999999999999999875 233444322221 33333221111 111112233333322 2333
Q ss_pred HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhc----cCCCCh--h----hhhcccCC-------CCCCCEEEE
Q psy16874 89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA----KEGMDI--S----WCFQPEKG-------LPKPDAVLL 151 (227)
Q Consensus 89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~----~~~~~~--~----~~~~~~~~-------~~~pd~vi~ 151 (227)
+..+. +++ |||+.++.++... +...+. . ++..+... ...||++||
T Consensus 69 ~~~~~-vi~-----------------d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~ 130 (205)
T 2jaq_A 69 KNLEN-IIF-----------------DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIY 130 (205)
T ss_dssp ----C-EEE-----------------ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEE
T ss_pred hccCC-EEE-----------------EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEE
Confidence 34444 677 9999987777653 111111 1 11111111 257999999
Q ss_pred eecCHHHHHHhcCCCCCCccc---HHHHHHHHHHHHHHh-----hCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 152 FKLNEEALQRRKGFGDERYEQ---TDFQRKVAENYEKLK-----DNIWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 152 L~~~~e~~~~R~~~r~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
|++|++++.+|+..|+...+. .++.+++...|..+. ....++||++++++++.++|.+.+...
T Consensus 131 L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 131 LRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI 201 (205)
T ss_dssp EECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred EeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 999999999999765433332 366677777776532 226899999999999999999888653
No 32
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.79 E-value=2.1e-19 Score=142.68 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
++|+|+|+|||||||+++.|++.++..+++++. ++++ ..+.+.+..+++++.++...+..... ..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~~i~ 69 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITI-----------PMVL 69 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHH-----------HHHH
Confidence 479999999999999999999998653333322 2544 22456777788888776655554332 3455
Q ss_pred HHHHc--CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 87 KLIEQ--GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 87 ~~~~~--~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
+.+.. +..+|+ |. +++...+ ..++..+ ......||++|||++|++++.+|+
T Consensus 70 ~~l~~~~g~~vIl-----------------Dg-----~~~~~~~----~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl 123 (223)
T 2xb4_A 70 ETLESKGKDGWLL-----------------DG-----FPRNTVQ----AQKLFEALQEKGMKINFVIEILLPREVAKNRI 123 (223)
T ss_dssp HHHHHHCTTCEEE-----------------ES-----CCCSHHH----HHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred HHHhcccCCeEEE-----------------eC-----CcCCHHH----HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 55554 666666 83 3322111 0222222 122347999999999999999998
Q ss_pred CCCC---C-------------------------Ccc-----cHH--HHHHH----------HH---HHHHHhh---CCeE
Q psy16874 164 GFGD---E-------------------------RYE-----QTD--FQRKV----------AE---NYEKLKD---NIWI 192 (227)
Q Consensus 164 ~~r~---~-------------------------~~~-----~~~--~~~~~----------~~---~~~~~~~---~~~~ 192 (227)
..|+ + .++ +.+ ..+++ .+ .|..+.. ..++
T Consensus 124 ~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~ 203 (223)
T 2xb4_A 124 MGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYI 203 (223)
T ss_dssp HTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEE
T ss_pred HcccCCccccCCccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEE
Confidence 6553 1 111 112 12222 44 5655432 2589
Q ss_pred EEcCCCCHHHHHHHHHHHH
Q psy16874 193 DIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 193 ~Id~~~s~~~v~~~I~~~i 211 (227)
+||+++++++|+++|.+.|
T Consensus 204 ~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 204 ELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp EEETTSCHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHh
Confidence 9999999999999998876
No 33
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.78 E-value=4.2e-19 Score=147.98 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=105.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC--CCCch-HHHHHHHhhc-----CCCCHH-H-----HH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR--TISTG-HIIDEYLRKK-----IELPDQ-A-----AH 71 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~-----~~~~~~-~-----~~ 71 (227)
+.+++|+|+|++||||||+++.|++++...+ +..++||.. ....+ +.+++++.++ ..+... . ..
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~~~g--v~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~ 79 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSA 79 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC----CC--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhhhCC--EEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHH
Confidence 5689999999999999999999999998766 777888852 11223 5777777542 234444 1 22
Q ss_pred HHHHhhhh----hhhh-HHHHH------HHcCCEEEEecccccccccCCCCCCCCcccchhh-hhhhcc---CCCChhhh
Q psy16874 72 LLFSANRW----EREP-TLTKL------IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV-AFSAAK---EGMDISWC 136 (227)
Q Consensus 72 ~~~~~~~~----~~~~-~i~~~------~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~-~~~~~~---~~~~~~~~ 136 (227)
+++++.++ ++.. .+.+. +..|.+||+ |||++|+. +|+... .+++...+
T Consensus 80 qL~fa~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~-----------------DR~~~Ss~~~yq~~~~~~g~l~~~~~ 142 (331)
T 1e2k_A 80 QITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIF-----------------DRHPIAALLCYPAARYLMGSMTPQAV 142 (331)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEE-----------------ECCHHHHHTHHHHHHHHTTSSCHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhHHhhccccccCCCEEEE-----------------ecCchHhHHHHHHHHHhcCCCCHHHH
Confidence 33444332 2221 12222 246778888 99999997 576431 35555444
Q ss_pred hccc---CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874 137 FQPE---KGLPKPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD 188 (227)
Q Consensus 137 ~~~~---~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~ 188 (227)
..+. .....||+++++++|++++.+|+.+|+...+ +.+|++++++.|..+..
T Consensus 143 ~~l~~~~~~~~ppdlt~lldl~pe~~l~RI~~Rgr~~Eri~~~yl~rvr~~Y~~l~~ 199 (331)
T 1e2k_A 143 LAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLAN 199 (331)
T ss_dssp HHHHHTCCCCCTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCeEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 3332 2234568999999999999999865532222 58999999999988754
No 34
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.78 E-value=9.4e-19 Score=135.07 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=106.5
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR 78 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|.. +.+++|+|+|+|||||||+++.|++.++..+++++. ++. +..+.+.+..+.+++..+...+.....
T Consensus 1 m~~--~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~------- 71 (194)
T 1qf9_A 1 MEK--SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV------- 71 (194)
T ss_dssp CCC--CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHH-------
T ss_pred CCC--CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-------
Confidence 555 346799999999999999999999999765555433 222 213556677777777766554443322
Q ss_pred hhhhhHHHHHHH--cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCH
Q psy16874 79 WEREPTLTKLIE--QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNE 156 (227)
Q Consensus 79 ~~~~~~i~~~~~--~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~ 156 (227)
..+...+. .+..+++ |+|..+...+. .|. ........||++|||++|+
T Consensus 72 ----~~l~~~i~~~~~~~vi~-----------------d~~~~~~~~~~--------~~~-~~~~~~~~~~~vi~l~~~~ 121 (194)
T 1qf9_A 72 ----KLLKNAIDANQGKNFLV-----------------DGFPRNEENNN--------SWE-ENMKDFVDTKFVLFFDCPE 121 (194)
T ss_dssp ----HHHHHHHHTSTTCCEEE-----------------ETCCCSHHHHH--------HHH-HHHTTTCEEEEEEEEECCH
T ss_pred ----HHHHHHHHhcCCCCEEE-----------------eCcCCCHHHHH--------HHH-HHHhccCCCCEEEEEECCH
Confidence 12222221 3455666 85543321111 111 1112223688999999999
Q ss_pred HHHHHhcCCCC---CCcc--cHHHHHHHHHHH-------HHHhhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 157 EALQRRKGFGD---ERYE--QTDFQRKVAENY-------EKLKDN-IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 157 e~~~~R~~~r~---~~~~--~~~~~~~~~~~~-------~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
+++.+|+..|. .+.+ ...+.+++...+ +.+... .+++||+++++++++++|.+.+.+
T Consensus 122 e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 122 EVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999986542 1222 234444554432 122112 568999999999999999988864
No 35
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.78 E-value=3.3e-18 Score=132.21 Aligned_cols=176 Identities=18% Similarity=0.193 Sum_probs=104.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC---CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF---PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE 82 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227)
+|++|+|+|+|||||||+++.|++.++..+++.+. ++. + .+...+..+++++.++...+.......+.. .+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~----~~ 76 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN-PDSQYGELIEKYIKEGKIVPVEITISLLKR----EM 76 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHC-TTSTTHHHHHHHHHTTCCCCHHHHHHHHHH----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhc-cCChHHHHHHHHHHCCCcCCHHHHHHHHHH----HH
Confidence 47899999999999999999999998765544432 111 2 245567777777776655555433321111 01
Q ss_pred hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
......+..+..+|+ |++..+...+. .|...+ ...+.||++|||++|++++.+|
T Consensus 77 ~~~~~~~~~~~~vi~-----------------dg~~~~~~~~~--------~~~~~~-~~~~~~~~~i~l~~~~e~~~~R 130 (196)
T 1tev_A 77 DQTMAANAQKNKFLI-----------------DGFPRNQDNLQ--------GWNKTM-DGKADVSFVLFFDCNNEICIER 130 (196)
T ss_dssp HHHHHHCTTCCEEEE-----------------ESCCCSHHHHH--------HHHHHH-TTTCEEEEEEEEECCHHHHHHH
T ss_pred HhhhccccCCCeEEE-----------------eCCCCCHHHHH--------HHHHHh-cccCCCCEEEEEECCHHHHHHH
Confidence 111122334667777 86655432221 122111 2234688999999999999999
Q ss_pred cCCCC---CCcc-cHHHHHHHHHHHHHH--------hh-CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 163 KGFGD---ERYE-QTDFQRKVAENYEKL--------KD-NIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 163 ~~~r~---~~~~-~~~~~~~~~~~~~~~--------~~-~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
+..|. ++.. +.+.+......|... .. ..+++||+++++++++++|.+.+.+
T Consensus 131 ~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 131 CLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 85432 1221 222222222222111 11 2577999999999999999988864
No 36
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.78 E-value=5.1e-19 Score=149.27 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=105.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC--CCCch-HHHHHHHhh-----cCCCCHH-H-----H
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR--TISTG-HIIDEYLRK-----KIELPDQ-A-----A 70 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~-----~~~~~~~-~-----~ 70 (227)
+.++++|+|+|++||||||+++.|++.|...+ +..++||.. ....+ +.+++++.+ ...+... . .
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g--vv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a~ 123 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDD--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTS 123 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC----CC--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhhCC--EEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHHH
Confidence 35688999999999999999999999998766 777888842 11123 567777754 2334444 2 2
Q ss_pred HHHHHhhh----hhhhh-HHH------HHHHcCCEEEEecccccccccCCCCCCCCcccchhh-hhhhcc---CCCChhh
Q psy16874 71 HLLFSANR----WEREP-TLT------KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV-AFSAAK---EGMDISW 135 (227)
Q Consensus 71 ~~~~~~~~----~~~~~-~i~------~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~-~~~~~~---~~~~~~~ 135 (227)
.+++++.+ +.+.+ .+. +.+..|.+||+ |||++|+. +|+... .+++...
T Consensus 124 ~QL~fa~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~-----------------DR~~~Ss~~ayq~~~y~~g~l~~~~ 186 (376)
T 1of1_A 124 AQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIF-----------------DRHPIAALLCYPAARYLMGSMTPQA 186 (376)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEEEC-----CCCSEEEEE-----------------ECCHHHHHTHHHHHHHHTTSSCHHH
T ss_pred HHHHHhccchHHHHHHHHHhhhhhcccccccCCCeEEE-----------------eeChhHHHHHHHHHHHhcCCCCHHH
Confidence 22333333 22221 222 22456788888 99999987 566431 3555554
Q ss_pred hhccc---CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874 136 CFQPE---KGLPKPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD 188 (227)
Q Consensus 136 ~~~~~---~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~ 188 (227)
+..+. .....||+++++++|++++.+|+.+|+...+ +.+|++++++.|..+..
T Consensus 187 i~~l~~~~~~~~ppdlt~Lldl~pe~~l~RI~~RgR~~Eri~leyl~rVr~~Y~~la~ 244 (376)
T 1of1_A 187 VLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLAN 244 (376)
T ss_dssp HHHHHHTCCCCCTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCeEEEEecCCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 44332 2234568899999999999999865532222 58999999999988754
No 37
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.78 E-value=5.7e-19 Score=137.88 Aligned_cols=173 Identities=16% Similarity=0.230 Sum_probs=104.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC--CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF--PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE 82 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227)
+++++|+|+|++||||||+++.|++.++..+++++. ++. ...+...++.++.++.++...+........ .
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l-------~ 85 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALL-------R 85 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHH-------H
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHH-------H
Confidence 457799999999999999999999988664444432 221 112566777788877766554443322111 1
Q ss_pred hHHHHHHHcC-CEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874 83 PTLTKLIEQG-ITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 83 ~~i~~~~~~~-~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~ 161 (227)
+.+.+.+..| ..+++ | ++++.... ... +......||++|||++|++++.+
T Consensus 86 ~~i~~~l~~g~~~~i~-----------------d-----g~~~~~~~-----~~~--~~~~~~~~~~~i~l~~~~e~~~~ 136 (203)
T 1ukz_A 86 NAISDNVKANKHKFLI-----------------D-----GFPRKMDQ-----AIS--FERDIVESKFILFFDCPEDIMLE 136 (203)
T ss_dssp HHHHHHHHTTCCEEEE-----------------E-----TCCCSHHH-----HHH--HHHHTCCCSEEEEEECCHHHHHH
T ss_pred HHHHhhhccCCCeEEE-----------------e-----CCCCCHHH-----HHH--HHHhcCCCCEEEEEECCHHHHHH
Confidence 2444555555 34555 6 44432221 111 11112358999999999999999
Q ss_pred hcCCCC---CCc-ccHH-HHHHHHHHH-------HHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 162 RKGFGD---ERY-EQTD-FQRKVAENY-------EKLKDN-IWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 162 R~~~r~---~~~-~~~~-~~~~~~~~~-------~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
|+..|+ +.. .+.+ ..+++...+ +.+... .+++||+++++++++++|.+.+...
T Consensus 137 Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 137 RLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 986542 111 1222 222222211 112222 5678999999999999999988754
No 38
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.77 E-value=9.2e-19 Score=136.62 Aligned_cols=169 Identities=18% Similarity=0.156 Sum_probs=100.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
..|++|+|+|+|||||||+++.|++.++..+++++. +++ ...+.+.+..+++++..+...+......
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~----------- 86 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNE----------- 86 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHH-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHH-----------
Confidence 457899999999999999999999999765544422 232 1124455667777777666555543321
Q ss_pred HHHHHH---HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHH
Q psy16874 84 TLTKLI---EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEAL 159 (227)
Q Consensus 84 ~i~~~~---~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~ 159 (227)
.+...+ ..+..+|+ |.|.. ...+. .++.. +......||++|+|++|++++
T Consensus 87 ~~~~~~~~~~~~~~vIl-----------------dg~~~-----~~~~~----~~l~~~l~~~~~~~~~vi~l~~~~e~~ 140 (201)
T 2cdn_A 87 LVDDRLNNPDAANGFIL-----------------DGYPR-----SVEQA----KALHEMLERRGTDIDAVLEFRVSEEVL 140 (201)
T ss_dssp HHHHHTTSGGGTTCEEE-----------------ESCCC-----SHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred HHHHHHhcccCCCeEEE-----------------ECCCC-----CHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence 111111 12223444 84322 21110 11211 112234689999999999999
Q ss_pred HHhcCCCCCCcccHHHH-HHHHHHHHH------HhhCCeEEEcCCCCHHHHHHHHHHHH
Q psy16874 160 QRRKGFGDERYEQTDFQ-RKVAENYEK------LKDNIWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 160 ~~R~~~r~~~~~~~~~~-~~~~~~~~~------~~~~~~~~Id~~~s~~~v~~~I~~~i 211 (227)
.+|+..|+..-.+.+.+ +++...+.. .....+++||+++++++++++|.+.|
T Consensus 141 ~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 141 LERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Confidence 99997543211223333 333333322 11226889999999999999988765
No 39
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.77 E-value=2.8e-19 Score=137.64 Aligned_cols=167 Identities=17% Similarity=0.179 Sum_probs=102.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
.+|++|+|+|+|||||||+++.|++.++..+++++. ++.. ..+.+.+..+++++.++...+..... .
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~ 70 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL-----------E 70 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHH-----------H
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHH-----------H
Confidence 468999999999999999999999999766655533 2221 12445566777777766555554433 2
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHh
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
.+.+.+..+ +++ |+|.... .+. ..+.. +......||++|||++|++++.+|
T Consensus 71 ~~~~~l~~~--~i~-----------------dg~~~~~-----~~~----~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R 122 (186)
T 3cm0_A 71 LIREELAER--VIF-----------------DGFPRTL-----AQA----EALDRLLSETGTRLLGVVLVEVPEEELVRR 122 (186)
T ss_dssp HHHHHCCSE--EEE-----------------ESCCCSH-----HHH----HHHHHHHHHTTEEEEEEEEEECCHHHHHHH
T ss_pred HHHHHhcCC--EEE-----------------eCCCCCH-----HHH----HHHHHHHHhcCCCCCEEEEEeCCHHHHHHH
Confidence 333333333 555 7543321 110 11111 111223578999999999999999
Q ss_pred cCCCC---CCcc-c-HHHHHHHHHHHHH-------HhhC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874 163 KGFGD---ERYE-Q-TDFQRKVAENYEK-------LKDN-IWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 163 ~~~r~---~~~~-~-~~~~~~~~~~~~~-------~~~~-~~~~Id~~~s~~~v~~~I~~~i 211 (227)
+..|. ++.+ + ..+.+++...+.. +... .+++||+++++++++++|.+.+
T Consensus 123 ~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 123 ILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 86542 2222 2 3333444433222 1111 4889999999999999998776
No 40
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.77 E-value=7.2e-19 Score=140.48 Aligned_cols=173 Identities=19% Similarity=0.175 Sum_probs=105.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
++++|+|+|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++..+..+++.... ..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~~ 83 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL-----------EL 83 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH-----------HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHH-----------HH
Confidence 46789999999999999999999999764444322 2220 11345567777777776666665443 23
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
+.+.+... ..++|+|+|+|..+ ..+. ..+..+ ......||++|||++|++++.+|+
T Consensus 84 i~~~l~~~--------------~~~~g~ildg~~~~-----~~~~----~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl 140 (233)
T 1ak2_A 84 IEKNLETP--------------PCKNGFLLDGFPRT-----VRQA----EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 140 (233)
T ss_dssp HHHHHTSG--------------GGTTCEEEESCCCS-----HHHH----HHHHHHHHHHTCCCCEEEEEECCHHHHHHHH
T ss_pred HHHHHhcc--------------cccCcEEEeCCCCC-----HHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 33333321 12344555965332 1110 112111 112346899999999999999998
Q ss_pred CCCC--------------------------C----Cccc--HHHHHHHHHHHHHH-------hh--CCeEEEcCCCCHHH
Q psy16874 164 GFGD--------------------------E----RYEQ--TDFQRKVAENYEKL-------KD--NIWIDIDADKDIDT 202 (227)
Q Consensus 164 ~~r~--------------------------~----~~~~--~~~~~~~~~~~~~~-------~~--~~~~~Id~~~s~~~ 202 (227)
..|. . +.++ ..+.+++. .|... .. ..+++||+++++++
T Consensus 141 ~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~-~y~~~~~~~~~~y~~~~~~~~id~~~~~~~ 219 (233)
T 1ak2_A 141 TGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLE-AYHTQTTPLVEYYSKRGIHSAIDASQTPDV 219 (233)
T ss_dssp HTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHH-HHHHHHHHHHHHHHHTTCEEEEETTSCHHH
T ss_pred HcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCEEEEECCCCHHH
Confidence 6541 1 1111 23334443 33321 11 25899999999999
Q ss_pred HHHHHHHHHHHH
Q psy16874 203 LGLIVKDIVIDT 214 (227)
Q Consensus 203 v~~~I~~~i~~~ 214 (227)
|+++|.+.|...
T Consensus 220 v~~~I~~~l~~~ 231 (233)
T 1ak2_A 220 VFASILAAFSKA 231 (233)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 41
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.77 E-value=4.8e-19 Score=140.04 Aligned_cols=170 Identities=13% Similarity=0.103 Sum_probs=101.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-ee--CCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VN--FPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
++++|+|+|+|||||||+++.|++.++..+++++. ++ .+. +++.+..+++++.++..+++.... .
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~-~t~~g~~i~~~~~~g~~~~~~~~~-----------~ 71 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKN-GTKIGLEAKSIIESGNFVGDEIVL-----------G 71 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-C--CCHHHHHHHHHTCCCCHHHHH-----------H
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHc-CCHHHHHHHHHHHCCCcCCHHHHH-----------H
Confidence 46789999999999999999999999765544422 22 122 456677888888777666665443 2
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHh
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
.+.+.+.. ...++|+|+| ++++...+ ..++..+ ......||++|||++|++++.+|
T Consensus 72 ~i~~~l~~--------------~~~~~~~i~d-----g~~~~~~~----~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R 128 (217)
T 3be4_A 72 LVKEKFDL--------------GVCVNGFVLD-----GFPRTIPQ----AEGLAKILSEIGDSLTSVIYFEIDDSEIIER 128 (217)
T ss_dssp HHHHHHHT--------------TTTTTCEEEE-----SCCCSHHH----HHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred HHHHHHhc--------------cccCCCEEEe-----CCCCCHHH----HHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 33333332 0123344448 44433221 1223221 12234789999999999999999
Q ss_pred cCCCC--------------------------CCcc--cHHHHHHHHH---HHHHH-------hh--CCeEEEcCCCCHHH
Q psy16874 163 KGFGD--------------------------ERYE--QTDFQRKVAE---NYEKL-------KD--NIWIDIDADKDIDT 202 (227)
Q Consensus 163 ~~~r~--------------------------~~~~--~~~~~~~~~~---~~~~~-------~~--~~~~~Id~~~s~~~ 202 (227)
+..|. +.+. ..++.+.+.+ .|... .. ..++.||+++++++
T Consensus 129 l~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~ 208 (217)
T 3be4_A 129 ISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKE 208 (217)
T ss_dssp HHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHH
T ss_pred HHcCCCCccccCccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHH
Confidence 86542 1121 1222222222 22111 21 26889999999999
Q ss_pred HHHHHHHHH
Q psy16874 203 LGLIVKDIV 211 (227)
Q Consensus 203 v~~~I~~~i 211 (227)
|+++|.+.|
T Consensus 209 v~~~i~~~l 217 (217)
T 3be4_A 209 VTEQIKKIL 217 (217)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhC
Confidence 999988753
No 42
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.76 E-value=1e-18 Score=138.30 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+++++|+|+|+|||||||+++.|++.++..+++++. +++ ...+.+.+..+++++..+...++.....
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~----------- 70 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVN----------- 70 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHH-----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHH-----------
Confidence 457899999999999999999999999765544422 232 1124566777888888776666654432
Q ss_pred HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHh
Q psy16874 84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRR 162 (227)
Q Consensus 84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R 162 (227)
.+.+.+... ...++++|+|+|.. ...+. ..+..+ ......||++|||++|++++.+|
T Consensus 71 ~l~~~l~~~-------------~~~~~~~i~dg~~~-----~~~~~----~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R 128 (220)
T 1aky_A 71 MIKDELTNN-------------PACKNGFILDGFPR-----TIPQA----EKLDQMLKEQGTPLEKAIELKVDDELLVAR 128 (220)
T ss_dssp HHHHHHHHC-------------GGGGSCEEEESCCC-----SHHHH----HHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred HHHHHHHhc-------------cccCCCeEEeCCCC-----CHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 222222200 01223344485432 21110 111111 12234789999999999999999
Q ss_pred cCCCC---------------------------C---Cccc--HHHHHHHHHHHHHH-------h--hCCeEEEcCCCCHH
Q psy16874 163 KGFGD---------------------------E---RYEQ--TDFQRKVAENYEKL-------K--DNIWIDIDADKDID 201 (227)
Q Consensus 163 ~~~r~---------------------------~---~~~~--~~~~~~~~~~~~~~-------~--~~~~~~Id~~~s~~ 201 (227)
+..|. + +.++ ..+.+++. .|... . ...++.||++++++
T Consensus 129 ~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~-~~~~~~~~l~~~y~~~~~~~~id~~~~~~ 207 (220)
T 1aky_A 129 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLA-AYHAQTEPIVDFYKKTGIWAGVDASQPPA 207 (220)
T ss_dssp HHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHH-HHHHHTTHHHHHHHHHTCEEEEETTSCHH
T ss_pred HhCCCccCccCCccccccCCCcccccccccccccccCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhCCCEEEEECCCCHH
Confidence 85431 0 1111 23344443 33322 1 12689999999999
Q ss_pred HHHHHHHHHHH
Q psy16874 202 TLGLIVKDIVI 212 (227)
Q Consensus 202 ~v~~~I~~~i~ 212 (227)
+|+++|.+.|.
T Consensus 208 ~v~~~i~~~l~ 218 (220)
T 1aky_A 208 TVWADILNKLG 218 (220)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988774
No 43
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.76 E-value=1.7e-18 Score=136.49 Aligned_cols=170 Identities=18% Similarity=0.196 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
|.|+|+|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++..+..+++.... ..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~ 69 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI-----------GIVH 69 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-----------HHHH
Confidence 469999999999999999999999776665533 3331 12455677777777777766664433 2333
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
..+... ..++++|+|.| +....+. ..+.. +......||.+|+|++|++++.+|+..
T Consensus 70 ~~l~~~--------------~~~~~~ildg~-----p~~~~~~----~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~ 126 (216)
T 3fb4_A 70 ERLSKD--------------DCQKGFLLDGF-----PRTVAQA----DALDSLLTDLGKKLDYVLNIKVEQEELMKRLTG 126 (216)
T ss_dssp HHHTSG--------------GGTTCEEEESC-----CCSHHHH----HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHS
T ss_pred HHHhcc--------------cCCCcEEEeCC-----CCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHc
Confidence 333221 11334444843 3222110 11211 122334689999999999999999976
Q ss_pred CC--------------------------CC----c-cc-HHHHHHHHHHHHHHh--------h-CCeEEEcCCCCHHHHH
Q psy16874 166 GD--------------------------ER----Y-EQ-TDFQRKVAENYEKLK--------D-NIWIDIDADKDIDTLG 204 (227)
Q Consensus 166 r~--------------------------~~----~-~~-~~~~~~~~~~~~~~~--------~-~~~~~Id~~~s~~~v~ 204 (227)
|. .. . .+ ....+++. .|.... . +.+++||+++++++++
T Consensus 127 R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~ 205 (216)
T 3fb4_A 127 RWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLD-VNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVF 205 (216)
T ss_dssp EEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHH-HHHHHHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred CCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHH-HHHHhHHHHHHHHHcCCcEEEEECCCCHHHHH
Confidence 50 00 0 11 22223332 222111 1 1589999999999999
Q ss_pred HHHHHHHHH
Q psy16874 205 LIVKDIVID 213 (227)
Q Consensus 205 ~~I~~~i~~ 213 (227)
++|.+.|.+
T Consensus 206 ~~i~~~l~~ 214 (216)
T 3fb4_A 206 VDINDLLGG 214 (216)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998863
No 44
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.76 E-value=9.7e-19 Score=137.91 Aligned_cols=170 Identities=16% Similarity=0.187 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
|.|+|+|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++..+..+++.... ..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~ 69 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI-----------GIVK 69 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-----------HHHH
Confidence 469999999999999999999988776665533 3331 22456677778888777666664433 2333
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
..+... ..++++|+|. +|....+. ..+.. +......||++|+|++|++++.+|+..
T Consensus 70 ~~l~~~--------------~~~~~~ildg-----~p~~~~~~----~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~ 126 (216)
T 3dl0_A 70 ERLGKD--------------DCERGFLLDG-----FPRTVAQA----EALEEILEEMGKPIDYVINIQVDKDVLMERLTG 126 (216)
T ss_dssp HHHTSG--------------GGTTCEEEES-----CCCSHHHH----HHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHT
T ss_pred HHHhcc--------------cccCCEEEeC-----CCCCHHHH----HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHC
Confidence 333220 1233444584 33322210 11111 122334689999999999999999976
Q ss_pred C---------------------------CC----Cccc-HHHHHHHHHHHHHHh-------h--CCeEEEcCCCCHHHHH
Q psy16874 166 G---------------------------DE----RYEQ-TDFQRKVAENYEKLK-------D--NIWIDIDADKDIDTLG 204 (227)
Q Consensus 166 r---------------------------~~----~~~~-~~~~~~~~~~~~~~~-------~--~~~~~Id~~~s~~~v~ 204 (227)
| +. .-.+ ....+++. .|.... . +.+++||+++++++++
T Consensus 127 R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~ 205 (216)
T 3dl0_A 127 RRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLE-VNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVY 205 (216)
T ss_dssp EEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHH-HHHHHHHHHHHHHHHHTCEEEEECSSCHHHHH
T ss_pred CCcCCccCCccccccCCCcccCccccccccccCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 5 00 0011 22222332 222221 1 1589999999999999
Q ss_pred HHHHHHHHH
Q psy16874 205 LIVKDIVID 213 (227)
Q Consensus 205 ~~I~~~i~~ 213 (227)
++|.+.|..
T Consensus 206 ~~i~~~l~~ 214 (216)
T 3dl0_A 206 ADLKVLLGG 214 (216)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHh
Confidence 999988863
No 45
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.74 E-value=2.9e-18 Score=135.17 Aligned_cols=165 Identities=15% Similarity=0.207 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
|.|+|+|+|||||||+++.|++.++..+++++. +++. ..+++.+..+++++..+..+++.... ..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~~i~ 69 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI-----------ALVK 69 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHH-----------HHHH
Confidence 359999999999999999999998654444422 2331 11345566667777666655554433 2333
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG 166 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r 166 (227)
+.+... ...+++|+|+| ++...+ ...+ ......||++|+|++|++++.+|+..|
T Consensus 70 ~~l~~~--------------~~~~~~i~dg~-----~~~~~~----~~~l---~~~~~~~d~vi~l~~~~e~~~~R~~~R 123 (214)
T 1e4v_A 70 ERIAQE--------------DCRNGFLLDGF-----PRTIPQ----ADAM---KEAGINVDYVLEFDVPDELIVDRIVGR 123 (214)
T ss_dssp HHHTSG--------------GGGGCEEEESC-----CCSHHH----HHHH---HHTTCCCSEEEEEECCHHHHHHHHHTE
T ss_pred HHHhcc--------------ccCCCEEEeCC-----CCCHHH----HHHH---HhcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 333321 01123344843 322111 0112 222347899999999999999998543
Q ss_pred C------------------------------CCccc--HHHHHHHHHHHHHHh-------h-------CCeEEEcCCCCH
Q psy16874 167 D------------------------------ERYEQ--TDFQRKVAENYEKLK-------D-------NIWIDIDADKDI 200 (227)
Q Consensus 167 ~------------------------------~~~~~--~~~~~~~~~~~~~~~-------~-------~~~~~Id~~~s~ 200 (227)
. .+.++ ..+.+++. .|.... . ..++.||+++++
T Consensus 124 ~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~-~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~ 202 (214)
T 1e4v_A 124 RVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLV-EYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPV 202 (214)
T ss_dssp EEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHH-HHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCH
T ss_pred cccCCcCCcccccCCCCCccccccccccccccCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcccccCCeEEEEECCCCH
Confidence 2 01111 33444553 333321 1 258899999999
Q ss_pred HHHHHHHHHHH
Q psy16874 201 DTLGLIVKDIV 211 (227)
Q Consensus 201 ~~v~~~I~~~i 211 (227)
++|+++|.+.|
T Consensus 203 ~~v~~~i~~~l 213 (214)
T 1e4v_A 203 AEVRADLEKIL 213 (214)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 46
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.74 E-value=2.6e-18 Score=136.60 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+++++|+|+|+|||||||+++.|++.++..+++++. ++.. ..+.+.|..+++++..+...++.....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~----------- 73 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTR----------- 73 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHH-----------
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHH-----------
Confidence 567899999999999999999999988765554422 2221 113455667777777666555543331
Q ss_pred HHHHHHH--cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874 84 TLTKLIE--QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 84 ~i~~~~~--~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~ 161 (227)
.+...+. .+..+|+ |+|..+ ..+. ..+.. ...||++|||++|++++.+
T Consensus 74 ~~~~~l~~~~~~~~vi-----------------d~~~~~--~~~~-------~~l~~----~~~~~~vi~L~~~~~~~~~ 123 (227)
T 1zd8_A 74 LALHELKNLTQYSWLL-----------------DGFPRT--LPQA-------EALDR----AYQIDTVINLNVPFEVIKQ 123 (227)
T ss_dssp HHHHHHHTCTTSCEEE-----------------ESCCCS--HHHH-------HHHHT----TSCCCEEEEEECCHHHHHH
T ss_pred HHHHHHhcccCCCEEE-----------------eCCCCC--HHHH-------HHHHH----hcCCCEEEEEECCHHHHHH
Confidence 1112222 2334455 865422 1110 11221 1468999999999999999
Q ss_pred hcCCCC-----C-------------------------Ccc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHH
Q psy16874 162 RKGFGD-----E-------------------------RYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDID 201 (227)
Q Consensus 162 R~~~r~-----~-------------------------~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~ 201 (227)
|+..|. + +.+ ..+.+......|..... ..+++||++ +++
T Consensus 124 R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~ 202 (227)
T 1zd8_A 124 RLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETN 202 (227)
T ss_dssp HHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHH
T ss_pred HHHcCcCCCccCCccccccCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHH
Confidence 986541 1 111 12333222234443321 258999999 999
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy16874 202 TLGLIVKDIVIDTIKKS 218 (227)
Q Consensus 202 ~v~~~I~~~i~~~l~~~ 218 (227)
+++++|.+.|...+...
T Consensus 203 ~v~~~i~~~l~~~~~~~ 219 (227)
T 1zd8_A 203 KIWPYVYAFLQTKVPQR 219 (227)
T ss_dssp HHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHhhcCCC
Confidence 99999999998766543
No 47
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=99.71 E-value=2.6e-18 Score=140.68 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=111.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
..+++|+|+|.+||||||+++.|.+.|+.+|+.|..+++|+ ++.+.. . .+..+
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt-----~eE~~~------~----------------yl~R~ 136 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT-----ETERGQ------W----------------YFQRY 136 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC-----HHHHTS------C----------------TTHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC-----hHHHhc------h----------------HHHHH
Confidence 35889999999999999999999999999999999999885 322211 0 11334
Q ss_pred HHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh----hhhh---cc---cCCCCCCCEEEEeec
Q psy16874 86 TKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI----SWCF---QP---EKGLPKPDAVLLFKL 154 (227)
Q Consensus 86 ~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~----~~~~---~~---~~~~~~pd~vi~L~~ 154 (227)
.+.+ ..|.+||+ ||||++.+++......++. ..+. .+ ....+.|+++|||++
T Consensus 137 ~~~LP~~G~IvIf-----------------DRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~I 199 (304)
T 3czq_A 137 VATFPTAGEFVLF-----------------DRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINI 199 (304)
T ss_dssp HTTCCCTTCEEEE-----------------EECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred HHhcccCCeEEEE-----------------ECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEEC
Confidence 4445 58999999 9999999988876544443 1222 22 112347999999999
Q ss_pred CHHHHHHhcCCCCC---C---c-----ccHHHHHHHHHHHHHHhhC------CeEEEcCCCCH---HHHHHHHHHHH
Q psy16874 155 NEEALQRRKGFGDE---R---Y-----EQTDFQRKVAENYEKLKDN------IWIDIDADKDI---DTLGLIVKDIV 211 (227)
Q Consensus 155 ~~e~~~~R~~~r~~---~---~-----~~~~~~~~~~~~~~~~~~~------~~~~Id~~~s~---~~v~~~I~~~i 211 (227)
|+++..+|+..|.+ . + +..+++..+.++|+..... +|++||++... ..+...|.+.|
T Consensus 200 s~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l 276 (304)
T 3czq_A 200 GREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKL 276 (304)
T ss_dssp CHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHH
Confidence 99999999864321 1 1 1234555666666665432 89999999654 33444444443
No 48
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.69 E-value=7.5e-17 Score=125.79 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK 87 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
+++|+|+|++||||||+++.|++.++...++.+.+. ..........+..+....... .+..+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~--------~~~~~~~~~~g~~~~~~~~~~--------~~~~l~~ 81 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALH--------PPENIRKMSEGIPLTDDDRWP--------WLAAIGE 81 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGC--------CHHHHHHHHHTCCCCHHHHHH--------HHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCc--------chhhHHHHhcCCCCCchhhHH--------HHHHHHH
Confidence 668999999999999999999999865333322111 111111222233333321111 1123333
Q ss_pred HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD 167 (227)
Q Consensus 88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~ 167 (227)
.+..+..+|+ |...... .+...+....+.|+.+|||++|++++.+|+..|.
T Consensus 82 ~~~~~~~viv-----------------d~~~~~~------------~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 132 (202)
T 3t61_A 82 RLASREPVVV-----------------SCSALKR------------SYRDKLRESAPGGLAFVFLHGSESVLAERMHHRT 132 (202)
T ss_dssp HHTSSSCCEE-----------------ECCCCSH------------HHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHH
T ss_pred HHhcCCCEEE-----------------ECCCCCH------------HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhh
Confidence 4445555555 6322110 1111122222467899999999999999997654
Q ss_pred CCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 168 ERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
......+.++.+.+.++..... ..++||++++++++.++|.+.|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 133 GHFMPSSLLQTQLETLEDPRGEVRTVAVDVAQPLAEIVREALAGLAR 179 (202)
T ss_dssp SSCCCHHHHHHHHHHCCCCTTSTTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhcCCCCCCCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 4333344555555444433322 688999999999999999999864
No 49
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.68 E-value=7e-17 Score=124.39 Aligned_cols=171 Identities=18% Similarity=0.179 Sum_probs=97.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
+++++|+|+|++||||||+++.|++.++..+.++..+. ++.++..+.....+........+. ......
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~--------~d~~~~~~~~~~~~~~~~r~~~~~----~~~~~~ 78 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD--------GDWARTTVSEGAGFTREERLRHLK----RIAWIA 78 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHHTTTTTTCCCCHHHHHHHHH----HHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee--------HHHHHHHHhhccCCChhhHHHHHH----HHHHHH
Confidence 46789999999999999999999999998888876554 222222111111122211110000 000111
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
......|.+|++ |++.. +.... .++..+....+.|+++|||++|++++.+|+..
T Consensus 79 ~~~~~~g~~vi~-----------------d~~~~----~~~~r-----~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 79 RLLARNGVIVIC-----------------SFVSP----YKQAR-----NMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp HHHHTTTCEEEE-----------------ECCCC----CHHHH-----HHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred HHHHhCCCEEEE-----------------eCccc----cHHHH-----HHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 222356778888 75431 11111 22222222233689999999999999999742
Q ss_pred C---CCCcccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874 166 G---DERYEQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 166 r---~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l 215 (227)
+ +...+....+..+...|+.. ....++||++ .+++++.++|.+.|...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~Id~~~~~~~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 133 GLYKKALKGELENFTGITDPYEPP-ENPQLVLDTESNTIEHNVSYLYSLVKAVI 185 (186)
T ss_dssp HHHHHHHTTCCSSCHHHHSCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHHC
T ss_pred hhhhHHhhcchhhhhhhhhcccCC-CCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 1 00000001112222233321 1256899998 899999999999887654
No 50
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.68 E-value=1.3e-15 Score=117.14 Aligned_cols=174 Identities=11% Similarity=0.133 Sum_probs=89.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh----
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE---- 82 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 82 (227)
++++|+|+|+|||||||+++.|++.++..|++...+. .++.+++................+.......+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~-------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS-------FGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMA 74 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE-------HHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe-------hHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHH
Confidence 3679999999999999999999999997665443332 13444444322111000000000000000000
Q ss_pred -hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874 83 -PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 83 -~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~ 161 (227)
..+.+.. .+..+|+ |++.....+.... .+++..++..+ .||++|||++|++++.+
T Consensus 75 ~~~i~~~~-~~~~vii-----------------d~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~ 130 (192)
T 1kht_A 75 GRKIAEMA-KESPVAV-----------------DTHSTVSTPKGYL-PGLPSWVLNEL-----NPDLIIVVETTGDEILM 130 (192)
T ss_dssp HHHHHHHH-TTSCEEE-----------------ECCSEEEETTEEE-ESSCHHHHHHH-----CCSEEEEEECCHHHHHH
T ss_pred HHHHHhhc-cCCeEEE-----------------ccceecccccccc-ccCcHHHHhcc-----CCCEEEEEeCCHHHHHH
Confidence 1233322 3344555 5432211111101 12222223211 47899999999999996
Q ss_pred -hcCC--CCCCccc---HHHHHHHHHHHHHHh----hCCeEEE-cCCCCHHHHHHHHHHHH
Q psy16874 162 -RKGF--GDERYEQ---TDFQRKVAENYEKLK----DNIWIDI-DADKDIDTLGLIVKDIV 211 (227)
Q Consensus 162 -R~~~--r~~~~~~---~~~~~~~~~~~~~~~----~~~~~~I-d~~~s~~~v~~~I~~~i 211 (227)
|+.. |+..... ......+...|.... ...+++| |.+++++++++.|.+.|
T Consensus 131 rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 131 RRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHhhhcccCCCcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 8865 4332222 223334444443322 2245565 45567999999988765
No 51
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.68 E-value=5.2e-16 Score=125.89 Aligned_cols=164 Identities=18% Similarity=0.230 Sum_probs=99.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
+++++|+|+|+|||||||+++.|++.+...|+.+.++.. +.++..+. + +.......+... ....+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~--------D~~~~~l~-~--~~~~~e~~~~~~----~~~~i 66 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS--------DLIRESFP-V--WKEKYEEFIKKS----TYRLI 66 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT--------HHHHTTSS-S--CCGGGHHHHHHH----HHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc--------hHHHHHHh-h--hhHHHHHHHHHH----HHHHH
Confidence 458899999999999999999999998877777664321 11111110 0 111111111111 11234
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
.+.+.. ..||+ |+..+.. ... ..+..+......|+++|||++|++++.+|+..
T Consensus 67 ~~~l~~-~~vIi-----------------D~~~~~~----~~~-----~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~ 119 (260)
T 3a4m_A 67 DSALKN-YWVIV-----------------DDTNYYN----SMR-----RDLINIAKKYNKNYAIIYLKASLDVLIRRNIE 119 (260)
T ss_dssp HHHHTT-SEEEE-----------------CSCCCSH----HHH-----HHHHHHHHHTTCEEEEEEEECCHHHHHHHHHH
T ss_pred HHHhhC-CEEEE-----------------eCCcccH----HHH-----HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHh
Confidence 455555 77777 7533221 110 22222223345688999999999999999976
Q ss_pred CCCCcccHHHHHHHHHHHHHHhh-----CCeEEEcCCC--CHHHHHHHHHHHHH
Q psy16874 166 GDERYEQTDFQRKVAENYEKLKD-----NIWIDIDADK--DIDTLGLIVKDIVI 212 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Id~~~--s~~~v~~~I~~~i~ 212 (227)
|+... +.+.++.+...|+.... .+.++||++. +++++++.|.+.+.
T Consensus 120 R~~~~-~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 120 RGEKI-PNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp TTCSS-CHHHHHHHHHHCCCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred CCCCC-CHHHHHHHHHHhcCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 65322 35666666666654331 2678999987 78888887777664
No 52
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.67 E-value=5.4e-17 Score=125.31 Aligned_cols=173 Identities=12% Similarity=0.020 Sum_probs=94.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-hH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-PT 84 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 84 (227)
++|++|+|+|+|||||||+++.|++.++...++.+ .....+..... ..............+..+ ..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 69 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKD------------AFKEVMFDGLG-WSDREWSRRVGATAIMMLYHT 69 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH------------HHHHHHHHHHC-CCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH------------HHHHHHHHhcC-ccchHHHHHhhHHHHHHHHHH
Confidence 56899999999999999999999999865332211 11111111111 111111111111112222 34
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
+.+.+..|..||+ |++. +.. .... .+ ..+......|+++|||++|++++.+|+.
T Consensus 70 ~~~~l~~g~~vi~-----------------d~~~-~~~--~~~~-----~~-~~l~~~~~~~~~~v~l~~~~e~~~~R~~ 123 (193)
T 2rhm_A 70 AATILQSGQSLIM-----------------ESNF-RVD--LDTE-----RM-QNLHTIAPFTPIQIRCVASGDVLVERIL 123 (193)
T ss_dssp HHHHHHTTCCEEE-----------------EECC-CHH--HHHH-----HH-HHHHHHSCCEEEEEEEECCHHHHHHHHH
T ss_pred HHHHHhCCCeEEE-----------------ecCC-CCH--HHHH-----HH-HHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 5556677777887 8665 110 0000 11 1122233468899999999999999986
Q ss_pred CCC---CCc-c--cHHHHH--HHHHHHHH---Hhh-CCeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 165 FGD---ERY-E--QTDFQR--KVAENYEK---LKD-NIWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 165 ~r~---~~~-~--~~~~~~--~~~~~~~~---~~~-~~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
.|+ ++. . ..+++. .+...|+. +.. ...++||++++.+++.++|.+.|...+..
T Consensus 124 ~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~~ 188 (193)
T 2rhm_A 124 SRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS 188 (193)
T ss_dssp HHHHTTCC--------CHHHHHHHHHSCCCCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHHH
T ss_pred HhcCccccCcccccCccCcchhhHHHHhcCCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHHh
Confidence 542 121 1 122332 23333332 222 26899999987666677777777666654
No 53
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.65 E-value=1.6e-15 Score=119.16 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=95.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
++|++|+|+|++||||||+++.|++.++ ..|+++..+. ++.++..+.....+........+. .....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~--------~d~~r~~l~~~~~~~~~~r~~~~~----~~~~~ 90 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD--------GDNIRFGLNKDLGFSEADRNENIR----RIAEV 90 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC--------HHHHTTTTTTTCCSSHHHHHHHHH----HHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC--------ChHHhhhhccccCCCHHHHHHHHH----HHHHH
Confidence 4688999999999999999999999998 6677666554 222221111111111111000000 01123
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC------CCCCCCEEEEeecCHHH
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK------GLPKPDAVLLFKLNEEA 158 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~pd~vi~L~~~~e~ 158 (227)
+.+.+..|..||+ | |. + ++.... .++..+.. ..+.|+++|||++|+++
T Consensus 91 ~~~~l~~g~~VI~-----------------d-~~-~--~~~~~~-----~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~ 144 (211)
T 1m7g_A 91 AKLFADSNSIAIT-----------------S-FI-S--PYRKDR-----DTARQLHEVATPGEETGLPFVEVYVDVPVEV 144 (211)
T ss_dssp HHHHHHTTCEEEE-----------------E-CC-C--CCHHHH-----HHHHHHHHCCCTTCSCCCCEEEEEEECCHHH
T ss_pred HHHHHHCCCEEEE-----------------e-cC-C--ccHHHH-----HHHHHHhhhcccccccCCCeEEEEEeCCHHH
Confidence 4456678888888 7 33 2 222111 34433322 34578999999999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHHHh----------hCCeEEEcCCC-CHHHHHHHHHHHHHH
Q psy16874 159 LQRRKGFGDERYEQTDFQRKVAENYEKLK----------DNIWIDIDADK-DIDTLGLIVKDIVID 213 (227)
Q Consensus 159 ~~~R~~~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~Id~~~-s~~~v~~~I~~~i~~ 213 (227)
+.+|+.+ + ++.+..+.|.... ....++||+++ +++++.++|.+.+..
T Consensus 145 ~~~R~~r--~------~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 145 AEQRDPK--G------LYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp HHTSCTT--C------HHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred HHHhhhH--H------HHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999731 1 1112222111100 11468999998 999999999988864
No 54
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.2e-16 Score=122.04 Aligned_cols=167 Identities=14% Similarity=0.059 Sum_probs=90.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
++++.+|+|+|++||||||+++.|++.++...++.+.+.....+... .+++.... .. .| +......
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i----~~~~~~~~------~~-~~---~~~e~~~ 87 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTV----GELFTERG------EA-GF---RELERNM 87 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCH----HHHHHHHH------HH-HH---HHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcH----HHHHHhcC------hH-HH---HHHHHHH
Confidence 35677999999999999999999999996543332211100000011 11111000 00 00 0000123
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
+.........|+. +++|.+.++ .....+. .++.+|||++|++++.+|+.
T Consensus 88 l~~l~~~~~~vi~----------~ggg~~~~~--------------~~~~~l~-------~~~~vi~L~~~~e~l~~Rl~ 136 (199)
T 3vaa_A 88 LHEVAEFENVVIS----------TGGGAPCFY--------------DNMEFMN-------RTGKTVFLNVHPDVLFRRLR 136 (199)
T ss_dssp HHHHTTCSSEEEE----------CCTTGGGST--------------THHHHHH-------HHSEEEEEECCHHHHHHHHH
T ss_pred HHHHhhcCCcEEE----------CCCcEEccH--------------HHHHHHH-------cCCEEEEEECCHHHHHHHHh
Confidence 3333334455554 333333331 0012221 26789999999999999997
Q ss_pred -CCC--CCcc---cHHHHHHHHHHHHHH---hhCCeEEEcCCC-CHHHHHHHHHHHHHHHhh
Q psy16874 165 -FGD--ERYE---QTDFQRKVAENYEKL---KDNIWIDIDADK-DIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 165 -~r~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~Id~~~-s~~~v~~~I~~~i~~~l~ 216 (227)
.+. +... ..+..+.+...|... .....++||+++ ++++++++|.+.+..+++
T Consensus 137 ~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~~l~ 198 (199)
T 3vaa_A 137 IAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQELLE 198 (199)
T ss_dssp HTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 432 1111 123344444444322 222457889886 999999999999988763
No 55
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.65 E-value=1.2e-15 Score=115.49 Aligned_cols=71 Identities=8% Similarity=-0.025 Sum_probs=48.1
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCC---cccHHHHHHHHH-HH---HHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDER---YEQTDFQRKVAE-NY---EKLKDNIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~---~~~~~~~~~~~~-~~---~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
.|+++|||++|++++.+|+..|+.. ....+..+++.. .. ........++||++++++++.++|.+.+..++
T Consensus 101 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 101 DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 6789999999999999999766432 122344444322 11 01111245788999999999999999998765
No 56
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.64 E-value=1.7e-15 Score=117.99 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=90.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++|.+|+|+|++||||||+++.|+..++... ....... . ...... ...+..+........+.. ....+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~---i~~d~~~---~-~~~~~~-~~~g~~~~~~~~~~~~~~----~~~~~ 94 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF---AEADAFH---S-PENIAT-MQRGIPLTDEDRWPWLRS----LAEWM 94 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE---EEGGGGS---C-HHHHHH-HHTTCCCCHHHHHHHHHH----HHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE---Ecccccc---c-HHHHHH-HhcCCCCCCcccccHHHH----HHHHH
Confidence 4578999999999999999999999884321 1111000 0 111111 112222222211111110 01233
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
...+..+..+++ |..+.. .... ..+. ....+..+|||++|++++.+|+..
T Consensus 95 ~~~~~~g~~vii-----------------d~~~~~----~~~~-----~~l~----~~~~~~~vv~l~~~~e~l~~Rl~~ 144 (200)
T 4eun_A 95 DARADAGVSTII-----------------TCSALK----RTYR-----DVLR----EGPPSVDFLHLDGPAEVIKGRMSK 144 (200)
T ss_dssp HHHHHTTCCEEE-----------------EECCCC----HHHH-----HHHT----TSSSCCEEEEEECCHHHHHHHHTT
T ss_pred HHHHhcCCCEEE-----------------Echhhh----HHHH-----HHHH----HhCCceEEEEEeCCHHHHHHHHHh
Confidence 334455555555 521111 0000 1221 112356899999999999999987
Q ss_pred CCCCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 166 GDERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
|+......+.+..+.+.++.+... ..++||++++++++.++|.+.+.
T Consensus 145 R~~~~~~~~~l~~~~~~~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 145 REGHFMPASLLQSQLATLEALEPDESGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp CSCCSSCGGGHHHHHHHCCCCCTTSCEEEEETTSCHHHHHHHHHHHHC
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence 755444333444443333333222 67899999999999999988875
No 57
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.63 E-value=5.2e-15 Score=112.61 Aligned_cols=169 Identities=13% Similarity=0.123 Sum_probs=90.7
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhh
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWE 80 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227)
|+.+..++.+|+|+|++||||||+++.|+..++... ....... . ...+... ..+..+........+. .
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~---i~~d~~~-~---~~~~~~~-~~g~~~~~~~~~~~~~--~-- 68 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAF---LDGDFLH-P---RRNIEKM-ASGEPLNDDDRKPWLQ--A-- 68 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEE---EEGGGGC-C---HHHHHHH-HTTCCCCHHHHHHHHH--H--
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHHhhCcEE---EeCcccc-c---hHHHHHh-hcCcCCCccccccHHH--H--
Confidence 666556688999999999999999999999875322 2211110 0 1111111 1122223211111110 0
Q ss_pred hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCC-EEEEeecCHHHH
Q psy16874 81 REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPD-AVLLFKLNEEAL 159 (227)
Q Consensus 81 ~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~L~~~~e~~ 159 (227)
....+...+..+..+|+ |.... +. .+...+... .++ .+|||++|++++
T Consensus 69 ~~~~~~~~~~~~~~~vi-----------------~~~~~----~~--------~~~~~l~~~--~~~~~vv~l~~~~e~~ 117 (175)
T 1knq_A 69 LNDAAFAMQRTNKVSLI-----------------VCSAL----KK--------HYRDLLREG--NPNLSFIYLKGDFDVI 117 (175)
T ss_dssp HHHHHHHHHHHCSEEEE-----------------ECCCC----SH--------HHHHHHHTT--CTTEEEEEEECCHHHH
T ss_pred HHHHHHHHHhcCCcEEE-----------------EeCch----HH--------HHHHHHHhc--CCCEEEEEEECCHHHH
Confidence 01233344445666666 42111 00 111111111 245 799999999999
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHH-hhC-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 160 QRRKGFGDERYEQTDFQRKVAENYEKL-KDN-IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 160 ~~R~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
.+|+..|+....+.+.+......++.. ... ..++||++++++++.++|.+.+.
T Consensus 118 ~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 118 ESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp HHHHHTSTTCCCCHHHHHHHHHHCCCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCchHHHHHHHHhhhCcccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 999987654433333333333322222 112 57899999999999999988764
No 58
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.63 E-value=6.8e-16 Score=118.17 Aligned_cols=168 Identities=11% Similarity=-0.030 Sum_probs=88.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhh-hhhH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWE-REPT 84 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (227)
++|++|+|+|+|||||||+++.|++.++...+ .. + ...+..+++++..+....... ..+.. ..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i----~d-~---~~~g~~i~~~~~~g~~~~~~~------~~~~~~~~~~ 68 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFV----FE-P---EEMGQALRKLTPGFSGDPQEH------PMWIPLMLDA 68 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEE----CC-T---HHHHHHHHHTSTTCCSCGGGS------TTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE----Ec-h---hhhHHHHHHhCccccchhhhh------HHHHHHHHHH
Confidence 46889999999999999999999998876332 11 1 223455555544221110000 00000 1133
Q ss_pred HHHHHHc-CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874 85 LTKLIEQ-GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK 163 (227)
Q Consensus 85 i~~~~~~-~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~ 163 (227)
+.+.+.. |..|++ |..+.....+. .+...+.... .+-..|||++|++++.+|+
T Consensus 69 i~~~l~~~g~~vi~-----------------d~~~~~~~~~~--------~~~~~l~~~~-~~~~~i~l~~~~e~~~~R~ 122 (183)
T 2vli_A 69 LQYASREAAGPLIV-----------------PVSISDTARHR--------RLMSGLKDRG-LSVHHFTLIAPLNVVLERL 122 (183)
T ss_dssp HHHHHHHCSSCEEE-----------------EECCCCHHHHH--------HHHHHHHHTT-CCCEEEEEECCHHHHHHHH
T ss_pred HHHHHHhCCCcEEE-----------------eeeccCHHHHH--------HHHHHHHhcC-CceEEEEEeCCHHHHHHHH
Confidence 4444554 677777 63322110110 1111111111 2235699999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874 164 GFGDERYEQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 164 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l 215 (227)
..|..+....+.+..+.+.++.. .... +||++ .++++++++|.+.+...+
T Consensus 123 ~~R~~r~~~~~~~~~~~~~~~~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 123 RRDGQPQVNVGTVEDRLNELRGE-QFQT-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp HTC----CCHHHHHHHHHHHTSG-GGCS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred HhccccchhHHHHHHHHHhhccc-ccce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 76643222234445555544433 2234 99998 899999999998886544
No 59
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.62 E-value=1.1e-15 Score=133.76 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=114.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
..+++|+|+|.+||||+|+++.|.+.++.+|+.|..+.+|+. +... . .. ..+..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~-----~E~~----~-~y----------------l~R~~ 94 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSD-----EELE----R-PP----------------QWRFW 94 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCH-----HHHT----S-CT----------------THHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh-----hhcc----C-Ch----------------hhhHH
Confidence 568999999999999999999999999999999988888852 1111 0 00 00112
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh-------hhhhcc---cCCCCCCCEEEEeecC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-------SWCFQP---EKGLPKPDAVLLFKLN 155 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~pd~vi~L~~~ 155 (227)
...-..|.++|+ ||||++...+.......+. .++..+ ....+.|+++|||++|
T Consensus 95 ~~lP~~G~IvIf-----------------dRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is 157 (500)
T 3czp_A 95 RRLPPKGRTGIF-----------------FGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLS 157 (500)
T ss_dssp HHCCCTTCEEEE-----------------ESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred HhCCCCCeEEEE-----------------eCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECC
Confidence 222247899999 9999999877655433332 222222 2345578999999999
Q ss_pred HHHHHHhcCCCCC-----------CcccHHHHHHHHHHHHHHhh----C--CeEEEcCCC---CHHHHHHHHHHHHHHHh
Q psy16874 156 EEALQRRKGFGDE-----------RYEQTDFQRKVAENYEKLKD----N--IWIDIDADK---DIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 156 ~e~~~~R~~~r~~-----------~~~~~~~~~~~~~~~~~~~~----~--~~~~Id~~~---s~~~v~~~I~~~i~~~l 215 (227)
+++..+|+..|.+ +++..++.....++|+.... . +|++|+++. ....+...|.+.|...+
T Consensus 158 ~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l 237 (500)
T 3czp_A 158 KKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAAL 237 (500)
T ss_dssp HHHHHHCC-------------CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999987632 22234445544455555442 1 899999995 35678888888888887
Q ss_pred hhc
Q psy16874 216 KKS 218 (227)
Q Consensus 216 ~~~ 218 (227)
.+.
T Consensus 238 ~~~ 240 (500)
T 3czp_A 238 ATK 240 (500)
T ss_dssp HC-
T ss_pred Hhc
Confidence 643
No 60
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.60 E-value=7.4e-16 Score=118.31 Aligned_cols=162 Identities=12% Similarity=0.018 Sum_probs=86.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhh--hhhhhhHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSAN--RWEREPTL 85 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i 85 (227)
+++|+|+|++||||||+++.|++.++...++.+.+ +.... +..+...... +... +......+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~------------~~~~~--g~~~~~~~~~--~g~~~~~~~~~~~~ 68 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKE------------IEKRT--GADIAWIFEM--EGEAGFRRREREMI 68 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH------------HHHHH--TSCHHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH------------HHHHc--CCChhhHHHH--hCHHHHHHHHHHHH
Confidence 56899999999999999999999997644432221 11111 1111100000 0000 00011233
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc--
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK-- 163 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~-- 163 (227)
.........|+. +++|++++. ... .++. ...++|||++|++++.+|+
T Consensus 69 ~~~~~~~~~vi~----------~gg~~~~~~-----~~~---------~~l~-------~~~~vi~L~~~~e~l~~Rl~~ 117 (185)
T 3trf_A 69 EALCKLDNIILA----------TGGGVVLDE-----KNR---------QQIS-------ETGVVIYLTASIDTQLKRIGQ 117 (185)
T ss_dssp HHHHHSSSCEEE----------CCTTGGGSH-----HHH---------HHHH-------HHEEEEEEECCHHHHHHHHHC
T ss_pred HHHHhcCCcEEe----------cCCceecCH-----HHH---------HHHH-------hCCcEEEEECCHHHHHHHHhh
Confidence 333344444554 455666661 110 2221 1137999999999999999
Q ss_pred CCCC--CCcccH---HHHHHHHHHHHHHhhC-CeEEEcCCC-CHHHHHHHHHHHHHHHhh
Q psy16874 164 GFGD--ERYEQT---DFQRKVAENYEKLKDN-IWIDIDADK-DIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 164 ~~r~--~~~~~~---~~~~~~~~~~~~~~~~-~~~~Id~~~-s~~~v~~~I~~~i~~~l~ 216 (227)
..+. +..... +.++.+......+... ..++||++. +++++.+.|.+.+...+.
T Consensus 118 ~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 118 KGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp CTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHSCC---
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 5432 222222 2333333322222221 348899886 899999999988866554
No 61
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.60 E-value=6e-15 Score=112.41 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=81.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH-HHHhCCCCeEEeeCCCCCCCchHHHHHHHhhc-----CCCCHHHHHHHHHhhhhhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD-YLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK-----IELPDQAAHLLFSANRWER 81 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 81 (227)
|++|+|+|+|||||||+++.|++ .++..+++. ..++..+... ..+......... ...
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~-------------d~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~ 64 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-------------DDYRQSIMAHEERDEYKYTKKKEGIVT----GMQ 64 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-------------HHHHHHHTTSCCGGGCCCCHHHHHHHH----HHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecH-------------HHHHHHhhCCCccchhhhchhhhhHHH----HHH
Confidence 57899999999999999999998 343323222 1222222111 112222211110 011
Q ss_pred hhHHHHHH---HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHH
Q psy16874 82 EPTLTKLI---EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA 158 (227)
Q Consensus 82 ~~~i~~~~---~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~ 158 (227)
...+.+.+ ..|..+|+ |.+..+...+ ..+..+......+..+|||++|+++
T Consensus 65 ~~~~~~~l~~~~~g~~vi~-----------------d~~~~~~~~~---------~~l~~~~~~~~~~~~~i~l~~~~~~ 118 (181)
T 1ly1_A 65 FDTAKSILYGGDSVKGVII-----------------SDTNLNPERR---------LAWETFAKEYGWKVEHKVFDVPWTE 118 (181)
T ss_dssp HHHHHHHHTSCSSCCEEEE-----------------CSCCCSHHHH---------HHHHHHHHHHTCEEEEEECCCCHHH
T ss_pred HHHHHHHHhhccCCCeEEE-----------------eCCCCCHHHH---------HHHHHHHHHcCCCEEEEEEeCCHHH
Confidence 13455566 66777777 8665432111 1121121112235579999999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 159 LQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 159 ~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
+.+|+..|.....+.+.+.++.+.|+.....+.++||++.+ +++...|...+.
T Consensus 119 ~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~ 171 (181)
T 1ly1_A 119 LVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKP-KAVIFDVDGTLA 171 (181)
T ss_dssp HHHHHTTCGGGCCCHHHHHHHHHHHHHHHTCCCC--------------------
T ss_pred HHHHHhccccCCCCHHHHHHHHHHhhccCCCCccccCCCCC-ceeeehhhhhhh
Confidence 99999876533334677778888888776544455888764 666666655544
No 62
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.59 E-value=1.2e-15 Score=115.56 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=40.0
Q ss_pred CCCEEEEeecCHHHHHHhcCCC--C--CCcccHHHHHHH----HHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFG--D--ERYEQTDFQRKV----AENYEKLKDNIWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r--~--~~~~~~~~~~~~----~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i 211 (227)
.++.+|||++|++++.+|+..| . +...+.+..... ...|... ..++||++++++++.++|.+.|
T Consensus 96 ~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~---a~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 96 GLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKN---ASFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp TSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHT---CSEEEEGGGCHHHHHHHHHHC-
T ss_pred cCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHH---CCEEEECCCCHHHHHHHHHHHh
Confidence 4689999999999999999765 1 122211111111 1122222 4588999889999998887654
No 63
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.59 E-value=4.8e-16 Score=119.33 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=42.4
Q ss_pred CCEEEEeecCHHHHHHhcCCCCC--CcccHHHHHHHHHHHH---HHhh-CCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKGFGDE--RYEQTDFQRKVAENYE---KLKD-NIWIDIDAD-KDIDTLGLIVKDIV 211 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r~~--~~~~~~~~~~~~~~~~---~~~~-~~~~~Id~~-~s~~~v~~~I~~~i 211 (227)
.+.+|||++|++++.+|+..|.. .+...+....+...|. .... ...++||++ .+++++.+.|.+.+
T Consensus 94 ~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l 166 (184)
T 2iyv_A 94 GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL 166 (184)
T ss_dssp TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTS
T ss_pred CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHH
Confidence 45799999999999999976642 2222112222332222 1111 146899998 89999888887665
No 64
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.58 E-value=2e-15 Score=114.05 Aligned_cols=66 Identities=9% Similarity=-0.018 Sum_probs=40.9
Q ss_pred CCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHH---Hhh-CCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK---LKD-NIWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
++++|||++|++++.+|+..|.++....++...+.+.|.. ... ..+++ +++.+++++.++|.+.+.
T Consensus 93 ~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 93 RGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSKADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp TSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTTSSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHhCCEEE-CCCCCHHHHHHHHHHHHH
Confidence 6899999999999999997653221100111112222211 111 24555 777999999999888774
No 65
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.53 E-value=2.9e-15 Score=131.01 Aligned_cols=169 Identities=13% Similarity=0.104 Sum_probs=112.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
..+++|+|+|.+||||+|+++.|.+.|+.+|+.|..+.+|+. +.. . ...+ . +..
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~-----~E~----~-~~yl----------~------R~~ 351 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTE-----EER----A-QPYL----------W------RFW 351 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCH-----HHH----T-SCTT----------H------HHH
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh-----hhh----c-chHH----------H------HHH
Confidence 458899999999999999999999999999999998988852 111 0 0000 0 111
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh-------hhhhcc---cCCCCCCCEEEEeecC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-------SWCFQP---EKGLPKPDAVLLFKLN 155 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~pd~vi~L~~~ 155 (227)
...=..|.++|+ ||||++...+.......+. .++..+ ....+.|+++|||++|
T Consensus 352 ~~lP~~G~i~If-----------------DRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is 414 (500)
T 3czp_A 352 RHIPARRQFTIF-----------------DRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAID 414 (500)
T ss_dssp TTCCCTTCEEEE-----------------ESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HhCCCCCeEEEE-----------------eCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECC
Confidence 111237889999 9999998876654422221 222223 1234578899999999
Q ss_pred HHHHHHhcCCCC-----------CCcccH----HHHHHHHHHHHHHhhC--CeEEEcCCC---CHHHHHHHHHHHHHHHh
Q psy16874 156 EEALQRRKGFGD-----------ERYEQT----DFQRKVAENYEKLKDN--IWIDIDADK---DIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 156 ~e~~~~R~~~r~-----------~~~~~~----~~~~~~~~~~~~~~~~--~~~~Id~~~---s~~~v~~~I~~~i~~~l 215 (227)
+++..+|+..|. .+.... +|.....+.+..-... +|++|+++. ....+.+.|.+.|...|
T Consensus 415 ~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~l 494 (500)
T 3czp_A 415 KQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAY 494 (500)
T ss_dssp HHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHHH
Confidence 999999986431 122222 3333333333333222 899999995 35678888888888777
Q ss_pred hh
Q psy16874 216 KK 217 (227)
Q Consensus 216 ~~ 217 (227)
.+
T Consensus 495 ~~ 496 (500)
T 3czp_A 495 KK 496 (500)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 66
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.52 E-value=3.9e-14 Score=107.30 Aligned_cols=67 Identities=6% Similarity=-0.002 Sum_probs=45.4
Q ss_pred CCEEEEeecCHHHHHHhcC--CC-C--CCcccHHHHHHHHHHHHHHhh---CCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKG--FG-D--ERYEQTDFQRKVAENYEKLKD---NIWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~--~r-~--~~~~~~~~~~~~~~~~~~~~~---~~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
++++|||++|++++.+|+. .| . +.....+...++...|..... ...++||++ .+++++.+.|.+.+.
T Consensus 94 ~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 94 HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHTT
T ss_pred CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCHHHHHHHHHHHhc
Confidence 5799999999999999987 55 2 223323444445544433221 135789988 899999888887663
No 67
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.52 E-value=1.5e-14 Score=110.08 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=42.4
Q ss_pred CCEEEEeecCHHHHHHhcCCC--CCC--cccHHHHHHHHHHHHH---HhhC-CeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKGFG--DER--YEQTDFQRKVAENYEK---LKDN-IWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r--~~~--~~~~~~~~~~~~~~~~---~~~~-~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
.+++|||++|++++.+|+..+ .++ ... ...+.+.|.. +... ..++||++ .+++++.+.|.+.+.
T Consensus 93 ~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~---~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 93 AGFCIYLKADFEYLKKRLDKDEISKRPLFYD---EIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp GCEEEEEECCHHHHTTCCCGGGTTTSCTTCC---HHHHHHHHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHHHhcccCCCCCCccc---HHHHHHHHHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHHHH
Confidence 358999999999999999654 122 221 2223222222 1111 46899999 799999999988774
No 68
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.52 E-value=2.7e-13 Score=105.81 Aligned_cols=173 Identities=12% Similarity=0.105 Sum_probs=93.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeE-EeeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQ-FVNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFS 75 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 75 (227)
.++++|+|+|++||||||+++.|++.++. .++++. .+++|..+...| +.+......+..+.... +.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 85 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDK----YA 85 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEE----ET
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHH----hC
Confidence 46889999999999999999999998853 233333 355553222111 12222222221100000 00
Q ss_pred hhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCC-CCEEEEee
Q psy16874 76 ANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPK-PDAVLLFK 153 (227)
Q Consensus 76 ~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pd~vi~L~ 153 (227)
...+.. ...+.+.+..|..||+ |..+.. . ..+ ....+. ..++|||+
T Consensus 86 ~~~~~~~~~~i~~~l~~g~~vi~-----------------d~~~~~------~------~~l---~~~~~~~~~~~i~l~ 133 (204)
T 2qor_A 86 NNFYGTLKSEYDLAVGEGKICLF-----------------EMNING------V------KQL---KESKHIQDGIYIFVK 133 (204)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEE-----------------ECCHHH------H------HHH---HHCSSCSCCEEEEEE
T ss_pred CCeecCCHHHHHHHHHcCCeEEE-----------------EECHHH------H------HHH---HHhcCCCCeEEEEEc
Confidence 000000 1245666778888887 622111 0 111 111111 13799998
Q ss_pred -cCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH----hhC-CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874 154 -LNEEALQRRKGFGDERYEQTDFQRKVAENYEKL----KDN-IWIDIDADKDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 154 -~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~----~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~~ 217 (227)
+|++++.+|+..|+... .....+++......+ ... ..+ |+++ ++++++++|.+.|...+.+
T Consensus 134 ~~s~e~l~~Rl~~R~~~~-~~~i~~rl~~~~~~~~~~~~~~~d~v-i~n~-~~e~~~~~i~~~i~~~~~~ 200 (204)
T 2qor_A 134 PPSIDILLGRLKNRNTEK-PEEINKRMQELTREMDEADKVGFNYF-IVND-DLARTYAELREYLLGSYPQ 200 (204)
T ss_dssp CSCHHHHHHHHHTCTTSC-HHHHHHHHHHHHHHHHHHHHHTCSEE-EECS-SHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhccCcEE-EECc-CHHHHHHHHHHHHHHHhhc
Confidence 99999999998765321 123333343332222 122 444 5555 8999999999999876643
No 69
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.49 E-value=9.7e-13 Score=103.54 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=47.6
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE---NYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~ 216 (227)
.||.+|||++|++++.+|+..|. .....+...++.. .+..... ..++||++++++++.++|.+.+..++.
T Consensus 125 ~~d~vi~l~~~~e~~~~Rl~~R~-~~~~~~~~~~~~~~~~~~~~~~~-ad~vId~~~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 125 KANRVLVVDVSPETQLKRTMQRD-DVTREHVEQILAAQATREARLAV-ADDVIDNNGAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp GCSEEEEEECCHHHHHHHHHHHH-TCCHHHHHHHHHHSCCHHHHHHH-CSEEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCChHHHHHh-CCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999997542 2222233333332 2221111 237899999999999999998877654
No 70
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.48 E-value=1.5e-13 Score=105.01 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=32.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+|++|+|+|++||||||+++.|++.+...|+++..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 45889999999999999999999999977777776554
No 71
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.47 E-value=2.5e-13 Score=109.05 Aligned_cols=171 Identities=15% Similarity=0.197 Sum_probs=92.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe-eC--CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV-NF--PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP 83 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
+|.+|+|+|++||||||+++.|++.++...++.+.+ .. +. ....+..+..++.++...+..... +
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~v~-----------~ 93 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA-STEVGEMAKQYIEKSLLVPDHVIT-----------R 93 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHT-TCHHHHHHHHHHHTTCCCCHHHHH-----------H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhc-CChHHHHHHHHHHcCCCCCHHHHH-----------H
Confidence 467999999999999999999999987654432221 10 10 122333334444443333332222 2
Q ss_pred HHHHHHH--cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874 84 TLTKLIE--QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR 161 (227)
Q Consensus 84 ~i~~~~~--~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~ 161 (227)
.+...+. .+..+++ |++ +....+ ...+. ....++++|+|++|++++.+
T Consensus 94 ~l~~~l~~~~~~~~il-----------------~g~-----~~~~~~----~~~l~----~~~~~~~vi~L~~~~~~~l~ 143 (246)
T 2bbw_A 94 LMMSELENRRGQHWLL-----------------DGF-----PRTLGQ----AEALD----KICEVDLVISLNIPFETLKD 143 (246)
T ss_dssp HHHHHHHTCTTSCEEE-----------------ESC-----CCSHHH----HHHHH----TTCCCCEEEEEECCHHHHHH
T ss_pred HHHHHHHhcCCCeEEE-----------------ECC-----CCCHHH----HHHHH----hhcCCCEEEEEECCHHHHHH
Confidence 2222221 1222333 632 211100 01111 12367899999999999998
Q ss_pred hcCCCC--------------------------CCc-----cc-HHHHHHHHHHHHH------H-hh-CCeEEEcCCCCHH
Q psy16874 162 RKGFGD--------------------------ERY-----EQ-TDFQRKVAENYEK------L-KD-NIWIDIDADKDID 201 (227)
Q Consensus 162 R~~~r~--------------------------~~~-----~~-~~~~~~~~~~~~~------~-~~-~~~~~Id~~~s~~ 201 (227)
|+..+. +.. .. ....+.+....+. . .. +.++.||++++ +
T Consensus 144 r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~ 222 (246)
T 2bbw_A 144 RLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-N 222 (246)
T ss_dssp HHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-H
T ss_pred HHHcCCCcCCCCCccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-H
Confidence 874321 111 11 2223333221111 1 11 15899999988 9
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q psy16874 202 TLGLIVKDIVIDTIKKSQF 220 (227)
Q Consensus 202 ~v~~~I~~~i~~~l~~~~~ 220 (227)
+++++|.+.|.+.+...++
T Consensus 223 ~v~~~i~~~l~~~~~~~~~ 241 (246)
T 2bbw_A 223 KIWPYVYTLFSNKITPIQS 241 (246)
T ss_dssp HHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHhhCCCCCc
Confidence 9999999999877765444
No 72
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.46 E-value=1.5e-13 Score=123.20 Aligned_cols=167 Identities=18% Similarity=0.230 Sum_probs=95.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
.++++|+|+|++||||||+++.|++.|...++++..++ ++.++..+..+..+.+......+. .....+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD--------gD~iR~~L~~~~~fs~~dree~~r----~i~eva 117 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD--------GDNIRQGLNKNLGFSPEDREENVR----RIAEVA 117 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES--------HHHHTTTTTTTCCSSHHHHHHHHH----HHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec--------hHHhhhccCccccCChhhhHHHHH----HHHHHH
Confidence 36889999999999999999999999977777776654 222322222111222111100000 001233
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
...+..|.+|++ | |. + ++.... .++..+......|+++|||++|++++.+|+.+
T Consensus 118 ~~~l~~G~iVI~-----------------d-~~-s--~~~~~r-----~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 118 KLFADAGLVCIT-----------------S-FI-S--PYTQDR-----NNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp HHHHHTTCEEEE-----------------E-CC-C--CCHHHH-----HHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred HHHHhCCCEEEE-----------------e-Cc-h--hhHHHH-----HHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 445567888887 5 11 1 111111 23333333334678999999999999999874
Q ss_pred CCCCccc-----HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 166 GDERYEQ-----TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 166 r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
+ .+.. ...+..+...|+... .+.++||++ .+++++.++|.+.|..
T Consensus 172 ~--ly~~aR~~~~~~~~~~~~~Ye~p~-~~dlvIDts~~s~eevv~~Il~~L~~ 222 (630)
T 1x6v_B 172 G--LYKKARAGEIKGFTGIDSEYEKPE-APELVLKTDSCDVNDCVQQVVELLQE 222 (630)
T ss_dssp S--HHHHHTTC----CBTTTBCCCCCS-SCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred c--cchhhhhhhHHHHHHhhhhhcccC-CCcEEEECCCCCHHHHHHHHHHHHHh
Confidence 2 1110 001111222332211 145889987 6999999999998864
No 73
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.46 E-value=6.9e-13 Score=106.75 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=86.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee-CCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN-FPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
+.+|+|+|++||||||+++.|++.+++..++.+.+. ....+.. +..++.. +.... +......+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~----i~~i~~~~ge~~f-----------r~~e~~~l 112 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTS----VAEIFEHFGESVF-----------REKETEAL 112 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSC----HHHHHHHHCHHHH-----------HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCcc----HHHHHHHhCcHHH-----------HHHHHHHH
Confidence 678999999999999999999999976443322111 0000111 1111111 10000 00011233
Q ss_pred HHHHHc-CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 86 TKLIEQ-GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 86 ~~~~~~-~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
...... ...|+. +++|++++ ......+ ..+++|||++|++++.+|+.
T Consensus 113 ~~l~~~~~~~Via----------~GgG~v~~--------------~~~~~~l--------~~~~vV~L~a~~e~l~~Rl~ 160 (250)
T 3nwj_A 113 KKLSLMYHQVVVS----------TGGGAVIR--------------PINWKYM--------HKGISIWLDVPLEALAHRIA 160 (250)
T ss_dssp HHHHHHCSSEEEE----------CCGGGGGS--------------HHHHHHH--------TTSEEEEEECCHHHHHHHHH
T ss_pred HHHHhhcCCcEEe----------cCCCeecC--------------HHHHHHH--------hCCcEEEEECCHHHHHHHHh
Confidence 333333 455655 33343333 0011222 12689999999999999986
Q ss_pred CC----CCCccc-------HHHHHHHHHHHHHH---hhCCeEEE------------cCC-CCHHHHHHHHHHHHHHHhhh
Q psy16874 165 FG----DERYEQ-------TDFQRKVAENYEKL---KDNIWIDI------------DAD-KDIDTLGLIVKDIVIDTIKK 217 (227)
Q Consensus 165 ~r----~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~I------------d~~-~s~~~v~~~I~~~i~~~l~~ 217 (227)
++ ++.... ....+.+...|++. ....-.+| |++ .+++++.+.|.+.+...++.
T Consensus 161 ~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~ 240 (250)
T 3nwj_A 161 AVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK 240 (250)
T ss_dssp C----------------CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 42 111221 01233344433332 22222344 765 89999999999999988765
Q ss_pred c
Q psy16874 218 S 218 (227)
Q Consensus 218 ~ 218 (227)
.
T Consensus 241 ~ 241 (250)
T 3nwj_A 241 E 241 (250)
T ss_dssp C
T ss_pred c
Confidence 4
No 74
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.44 E-value=7.9e-14 Score=106.54 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=26.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
.++++|+|+|++||||||+++.|++.++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 4567899999999999999999999986533
No 75
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.43 E-value=6.6e-13 Score=101.94 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH-HHhCCCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY-LNKNNIP 38 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~-l~~~~~~ 38 (227)
+++++|+|+|++||||||+++.|++. +++..++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 56889999999999999999999998 5554433
No 76
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.43 E-value=8.1e-14 Score=108.87 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=46.1
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCccc-HH-HHHHHHHHHHHHh----h--CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQ-TD-FQRKVAENYEKLK----D--NIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~-~~-~~~~~~~~~~~~~----~--~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.+|.+|||++|++++.+|+..|+...+. .+ +...+...|.... . ..+++||++++++++.++|.+.+..
T Consensus 129 ~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 129 IWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp TCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred hcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999998544311121 11 2223333333221 1 2677899999999999999988754
No 77
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.42 E-value=1.3e-12 Score=107.05 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=48.7
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHH--HHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhcC
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY--EKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQ 219 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~ 219 (227)
.+|.+|||++|++++.+|+..|.. ....+...++...+ ........++||++++++++.++|.+.+..++....
T Consensus 199 ~~d~vI~l~a~~ev~~~Rl~~R~g-~s~e~~~~ri~~q~~~~~~~~~AD~vIdn~~s~eel~~~I~~~l~~l~~~~~ 274 (281)
T 2f6r_A 199 MVHEVWTVVIPETEAVRRIVERDG-LSEAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLLQKRLP 274 (281)
T ss_dssp GCSEEEEEECCHHHHHHHHHHHHC-CCHHHHHHHHHTSCCHHHHHHTCSEEEECSSCHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCEEEEEcCCHHHHHHHHHHcCC-CCHHHHHHHHHHcCChHhhHhhCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999875421 11123333333211 111111237899999999999999999987765443
No 78
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.42 E-value=1.8e-12 Score=101.10 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=44.9
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHhhCCeEEEcCCCCHH----HHHHHHHHHHHHHhhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE---NYEKLKDNIWIDIDADKDID----TLGLIVKDIVIDTIKK 217 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Id~~~s~~----~v~~~I~~~i~~~l~~ 217 (227)
..|.+|||++|++++.+|+..|.. ....+..+++.. ..+.... ..++||++++++ ++.++|.+.+..++..
T Consensus 123 ~~d~vi~l~~~~e~~~~Rl~~R~~-~~~e~~~~r~~~q~~~~~~~~~-ad~vIdn~~~~~~~~~~~~~~i~~~~~~~~~~ 200 (206)
T 1jjv_A 123 LCDRILVVDVSPQTQLARSAQRDN-NNFEQIQRIMNSQVSQQERLKW-ADDVINNDAELAQNLPHLQQKVLELHQFYLQQ 200 (206)
T ss_dssp GCSEEEEEECCHHHHHHHHC------CHHHHHHHHHHSCCHHHHHHH-CSEEEECCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC-CCHHHHHHHHHhcCChHHHHHh-CCEEEECCCCccccHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999987632 222222233321 1111111 237899999999 9999999988776653
No 79
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.41 E-value=7.3e-13 Score=100.29 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCEEEEeecCHHHHHHhcCCCC--CCcc--c--HHHHHHHHH----HHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKGFGD--ERYE--Q--TDFQRKVAE----NYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r~--~~~~--~--~~~~~~~~~----~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
.++++||++|++++.+|+..|. +... + .+.+..+.. .|... ..++||++ .+++++.++|.+.+.
T Consensus 97 ~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~---a~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 97 RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEI---ADVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHH---CSEEC-----CHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhh---CCEEEECCCCCHHHHHHHHHHHHH
Confidence 3689999999999999997653 1111 1 233333322 23322 45899988 899999999888764
No 80
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.40 E-value=1.4e-12 Score=103.02 Aligned_cols=72 Identities=8% Similarity=0.088 Sum_probs=45.1
Q ss_pred CCCCEEEEeecCHHHHHHhcC----CCCCCcccHHHHHHHH----HHHHH----HhhC-CeEEEcCC-CCHHHHHHHHHH
Q psy16874 144 PKPDAVLLFKLNEEALQRRKG----FGDERYEQTDFQRKVA----ENYEK----LKDN-IWIDIDAD-KDIDTLGLIVKD 209 (227)
Q Consensus 144 ~~pd~vi~L~~~~e~~~~R~~----~r~~~~~~~~~~~~~~----~~~~~----~~~~-~~~~Id~~-~s~~~v~~~I~~ 209 (227)
+.+|++|||++|++++.+|.. .|+......+....+. ..|.. .... ..++||++ ++++++.++|.+
T Consensus 139 ~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~ 218 (227)
T 1cke_A 139 PDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ 218 (227)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHH
Confidence 468999999999999999942 2221111122222232 22322 1111 45899999 899999999999
Q ss_pred HHHHHh
Q psy16874 210 IVIDTI 215 (227)
Q Consensus 210 ~i~~~l 215 (227)
.+...+
T Consensus 219 ~l~~~~ 224 (227)
T 1cke_A 219 YARQKL 224 (227)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987765
No 81
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.38 E-value=6.2e-12 Score=99.98 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=42.4
Q ss_pred CCCCEEEEeecCHHHHHHhcCC----CCCCcccHHHHHHHHH-HHHHHhh---C-----CeEEEcCC-CCHHHHHHHHHH
Q psy16874 144 PKPDAVLLFKLNEEALQRRKGF----GDERYEQTDFQRKVAE-NYEKLKD---N-----IWIDIDAD-KDIDTLGLIVKD 209 (227)
Q Consensus 144 ~~pd~vi~L~~~~e~~~~R~~~----r~~~~~~~~~~~~~~~-~~~~~~~---~-----~~~~Id~~-~s~~~v~~~I~~ 209 (227)
|..++.|||++|++++.+|..+ .+....-.+....+.+ ...+... . ..++||++ .+++++.+.|.+
T Consensus 144 pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~ 223 (233)
T 3r20_A 144 PDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLD 223 (233)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHH
Confidence 3457999999999999998753 1222222233333322 1111111 1 23899977 799999999988
Q ss_pred HHHHHh
Q psy16874 210 IVIDTI 215 (227)
Q Consensus 210 ~i~~~l 215 (227)
.+...+
T Consensus 224 ~i~~~~ 229 (233)
T 3r20_A 224 LVTAQA 229 (233)
T ss_dssp HC----
T ss_pred HHHHhh
Confidence 876544
No 82
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.38 E-value=2.9e-12 Score=103.19 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=43.9
Q ss_pred CCEEEEeecCHHHHHHhcCCCC---CCcccHHHHHHHH----HHHHHHh----hCCeEEE----cCCCCHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKGFGD---ERYEQTDFQRKVA----ENYEKLK----DNIWIDI----DADKDIDTLGLIVKDI 210 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r~---~~~~~~~~~~~~~----~~~~~~~----~~~~~~I----d~~~s~~~v~~~I~~~ 210 (227)
+|++|||++|++++.+|+..|. ......+...++. ..|+... ...-++| |++++++++.++|.+.
T Consensus 151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~ 230 (252)
T 1uj2_A 151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDI 230 (252)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHH
T ss_pred cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHH
Confidence 5799999999999999986542 0122222222222 2243321 1123455 8888999999999999
Q ss_pred HHHHhhhcC-CCCCc
Q psy16874 211 VIDTIKKSQ-FSPLE 224 (227)
Q Consensus 211 i~~~l~~~~-~~~~~ 224 (227)
+...++... |..|+
T Consensus 231 l~~~~~~~~~~~~~~ 245 (252)
T 1uj2_A 231 LNGGPSKRQTNGCLN 245 (252)
T ss_dssp HHC------------
T ss_pred HccchhhhhccCccc
Confidence 987776655 55544
No 83
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.36 E-value=2.3e-12 Score=114.53 Aligned_cols=163 Identities=12% Similarity=0.167 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
.+++|+|+|++||||||+++.|++.++..|.++..++ ++.++..+.....+........+. .....+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld--------~D~ir~~l~~~~~f~~~er~~~l~----~i~~~~~ 438 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD--------GDVVRTHLSRGLGFSKEDRITNIL----RVGFVAS 438 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC--------HHHHHHHTCTTCCSSHHHHHHHHH----HHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC--------chHhhhhhcccccccHHHHHHHHH----HHHHHHH
Confidence 4789999999999999999999999998887776654 334444333222222211111000 0112344
Q ss_pred HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCC-EEEEeecCHHHHHHhcCC
Q psy16874 87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPD-AVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~L~~~~e~~~~R~~~ 165 (227)
..+..|..||+ |-. .++.... .....+.. .++ ++|||++|++++.+|+.+
T Consensus 439 ~~l~~G~~VI~-----------------d~~----~~~~~~r-----~~~~~~l~---~~d~~vV~L~~~~e~~~~Rl~r 489 (546)
T 2gks_A 439 EIVKHNGVVIC-----------------ALV----SPYRSAR-----NQVRNMME---EGKFIEVFVDAPVEVCEERDVK 489 (546)
T ss_dssp HHHHTTCEEEE-----------------ECC----CCCHHHH-----HHHHTTSC---TTCEEEEEEECCGGGHHHHCCS
T ss_pred HHHhCCCEEEE-----------------EcC----CCCHHHH-----HHHHHHhh---cCCEEEEEEeCCHHHHHHHhhc
Confidence 55667888888 611 1111111 11111111 256 899999999999999863
Q ss_pred CCCCccc--HHHHH---HHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 166 GDERYEQ--TDFQR---KVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 166 r~~~~~~--~~~~~---~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
+ .+.+ ...+. .+.+.|+.. ....++||++ ++++++.++|.+.+..
T Consensus 490 ~--~~~~~~~~~i~~~~~vr~~~e~~-~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 490 G--LYKKAKEGLIKGFTGVDDPYEPP-VAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp S--HHHHC------CCBTTTBCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred c--ccccccHHHHHHHHhhhhccccc-cCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 2 1211 00011 011112211 1145899987 8999999999988864
No 84
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.34 E-value=4.8e-12 Score=98.34 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=84.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
++|.+|+|+|++||||||+++.|+..+...|.-+..+. +..+...+..+..+........+. ......
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d--------~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 90 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD--------GDNVRHGLNRDLSFKAEDRAENIR----RVGEVA 90 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHTTTTTTTCCSSHHHHHHHHH----HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec--------CchhhhHhhcccCcChHHHHHHHH----HHHHHH
Confidence 46889999999999999999999999986665433333 111111111111122211111000 000122
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
......+..+++ +... +..... ..+..... ..+.++|||++|++++.+|..+
T Consensus 91 ~~~~~~~~~vi~-----------------~~~~----~~~~~r-----~~~~~~~~--~~~~~~v~L~a~~e~~~~R~~~ 142 (200)
T 3uie_A 91 KLFADAGIICIA-----------------SLIS----PYRTDR-----DACRSLLP--EGDFVEVFMDVPLSVCEARDPK 142 (200)
T ss_dssp HHHHHTTCEEEE-----------------ECCC----CCHHHH-----HHHHHTSC--TTSEEEEEECCCHHHHHHHCTT
T ss_pred HHHHhCCceEEE-----------------ecCC----chHHHH-----HHHHHhcC--CCCEEEEEEeCCHHHHHHhccc
Confidence 233346666666 2100 000000 22221111 1234689999999999999843
Q ss_pred C------CCCcccHHHHHHHHHHHHHHhhCCeEEEcCC--CCHHHHHHHHHHHHHH
Q psy16874 166 G------DERYEQTDFQRKVAENYEKLKDNIWIDIDAD--KDIDTLGLIVKDIVID 213 (227)
Q Consensus 166 r------~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~--~s~~~v~~~I~~~i~~ 213 (227)
+ ...+.+. ..+...|+... ...++||++ .+++++.+.|.+.|..
T Consensus 143 ~l~~~~r~~~~~~~---~~~~~~~~~~~-~~~~~idt~~~~~~~e~v~~i~~~l~~ 194 (200)
T 3uie_A 143 GLYKLARAGKIKGF---TGIDDPYEPPL-NCEISLGREGGTSPIEMAEKVVGYLDN 194 (200)
T ss_dssp SHHHHHHTTSSCSC---BTTTBCCCCCS-SCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred chHHHHhcCCCCCC---CCCCCcCcCCC-CCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 1 1111110 00111222211 156899987 4999999999988864
No 85
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.34 E-value=5.3e-12 Score=97.80 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=46.6
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHH---HHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAEN---YEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
.+|.+|||++|++++.+|+..|. .+...+...++... +..... .-++||++++++++.++|.+.+..++
T Consensus 124 ~~d~~i~l~~~~e~~~~R~~~R~-~~~~~~~~~~i~~~~~~~~~~~~-ad~vId~~~~~~~~~~~i~~~~~~~~ 195 (203)
T 1uf9_A 124 RLHGTLLVAAPLEERVRRVMARS-GLSREEVLARERAQMPEEEKRKR-ATWVLENTGSLEDLERALKAVLAELT 195 (203)
T ss_dssp GSSEEEEECCCHHHHHHHHHTTT-CCTTHHHHHHHTTSCCHHHHHHH-CSEEECCSSHHHHHHHHHHHHHHSCC
T ss_pred hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHHCCChhHHHHh-CCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999997653 23323344444331 211111 22689999999999999988886543
No 86
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=99.32 E-value=2.8e-12 Score=103.69 Aligned_cols=162 Identities=12% Similarity=0.183 Sum_probs=99.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT 86 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (227)
.+.+|+|+|.+||||+++++.|.+.++.+|+.|..+..|.. .+..+.+ +....
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~----eE~~~~y-----------------------lwR~~ 126 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTD----EEKSHDF-----------------------LWRIE 126 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCH----HHHTSCT-----------------------THHHH
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCCh----hhhcCCH-----------------------HHHHH
Confidence 58899999999999999999999999999999998888752 1110000 01122
Q ss_pred HHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh-------hhhhcccC---CCCCCCEEEEeecC
Q psy16874 87 KLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-------SWCFQPEK---GLPKPDAVLLFKLN 155 (227)
Q Consensus 87 ~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~-------~~~~~~~~---~~~~pd~vi~L~~~ 155 (227)
..+ ..|.++|+ |||||+...........+. ..+..++. ..+...+.+||++|
T Consensus 127 ~~lP~~G~I~IF-----------------dRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIs 189 (289)
T 3rhf_A 127 KQVPAAGMVGVF-----------------DRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNIS 189 (289)
T ss_dssp TTCCCTTCEEEE-----------------ESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECC
T ss_pred HhCCCCCeEEEE-----------------eCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECC
Confidence 222 46889998 9999997765544311111 11222222 33456689999999
Q ss_pred HHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhh----C--CeEEEcCCCCHH---HHHHHHHHHHH
Q psy16874 156 EEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKD----N--IWIDIDADKDID---TLGLIVKDIVI 212 (227)
Q Consensus 156 ~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~----~--~~~~Id~~~s~~---~v~~~I~~~i~ 212 (227)
.++..+|+..|.+. +. +.+.......+|++... . ||++|+++...- .|...|.+.|.
T Consensus 190 keEQ~kR~~~R~~dP~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le 266 (289)
T 3rhf_A 190 KDEQKKRLIARLDDPSKHWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALG 266 (289)
T ss_dssp HHHHHHHHHHHHHCGGGGGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 99999999754211 11 11122223333433332 2 999999984322 24444444444
No 87
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.32 E-value=1.4e-12 Score=99.22 Aligned_cols=61 Identities=8% Similarity=0.050 Sum_probs=38.6
Q ss_pred CCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD--NIWIDIDAD-KDIDTLGLIVKDIV 211 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~-~s~~~v~~~I~~~i 211 (227)
+..+|||++|++++.+|+..|+.+.... .. ..++.... ...++||++ .+++++++.|.+.+
T Consensus 113 ~~~~v~l~~~~e~l~~R~~~r~~~~~~~--~~---~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 113 DVLWVGVRCDGAVAEGRETARGDRVAGM--AA---KQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp CEEEEEEECCHHHHHHHHHHTSSSCTTH--HH---HHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred cEEEEEEECCHHHHHHHHHhhCCcccch--hh---hhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 4468999999999999997654332211 11 11111111 145789987 49999988887654
No 88
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.32 E-value=2e-12 Score=104.22 Aligned_cols=72 Identities=7% Similarity=0.066 Sum_probs=43.3
Q ss_pred CCCCEEEEeecCHHHHHHhcCC----CCCCcccHHHHHHHHHH----H-HHHhhC----CeEEEcCCC-CHHHHHHHHHH
Q psy16874 144 PKPDAVLLFKLNEEALQRRKGF----GDERYEQTDFQRKVAEN----Y-EKLKDN----IWIDIDADK-DIDTLGLIVKD 209 (227)
Q Consensus 144 ~~pd~vi~L~~~~e~~~~R~~~----r~~~~~~~~~~~~~~~~----~-~~~~~~----~~~~Id~~~-s~~~v~~~I~~ 209 (227)
+..+++|||++|++++.+|... ++......+....+.+. . +.+... ..++||++. +++++.+.|.+
T Consensus 161 ~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~ 240 (252)
T 4e22_A 161 PDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALA 240 (252)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHH
Confidence 3568999999999999998743 11221112222222111 1 111111 358899885 99999999999
Q ss_pred HHHHHh
Q psy16874 210 IVIDTI 215 (227)
Q Consensus 210 ~i~~~l 215 (227)
.+...+
T Consensus 241 ~i~~~~ 246 (252)
T 4e22_A 241 YAQRIL 246 (252)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 887655
No 89
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.31 E-value=2.4e-12 Score=114.99 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=92.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCC-CCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN-IPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
+++++|+|+|++||||||+++.|++.|+..| .++..++ ++.++..+..+..+........+ ......
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD--------~D~ir~~l~~~~~f~~~er~~~i----~ri~~v 461 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL--------GDTVRHELSSELGFTREDRHTNI----QRIAFV 461 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE--------HHHHHHHTCTTCCCSHHHHHHHH----HHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC--------cHHHHHHhccccCCChhHHHHHH----HHHHHH
Confidence 4578999999999999999999999999866 6766655 33344333222222221111000 000124
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
+......|.+||+ | ..+. +...+ .++..+.... .++++|||++|++++.+|..
T Consensus 462 ~~~~~~~g~~VI~-----------------~--~is~--~~~~R-----~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 462 ATELTRAGAAVIA-----------------A--PIAP--YEESR-----KFARDAVSQA-GSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHHHHTTCEEEE-----------------E--CCCC--CHHHH-----HHHHHHHHTT-SEEEEEEECCCHHHHHHHCS
T ss_pred HHHHHhCCCEEEE-----------------E--cCCC--cHHHH-----HHHHHHHHhc-CCeEEEEEeCCHHHHHHHhc
Confidence 4555677888888 4 1111 11111 1121111111 14689999999999999975
Q ss_pred CCCCCcccH-----HHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 165 FGDERYEQT-----DFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 165 ~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
++ .+... ..+....+.|+.. ....++||++ .+++++.++|.+.|..
T Consensus 515 r~--l~~~~~~~~i~~~~~~r~~~~~p-~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 515 RG--IYAAARRGEIKGFTGVDDPYETP-EKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp SC--HHHHHHTTSSSSCBTTTBCCCCC-SSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred cc--chhhhhHHHHHHHHhcccccccc-CCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 32 11100 0000111112111 1145889988 4999999999988864
No 90
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.31 E-value=1.6e-12 Score=101.09 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=46.1
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHH--HhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK--LKDNIWIDIDADKDIDTLGLIVKDIVIDTI 215 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l 215 (227)
.+|.+|||++|++++.+|+..|+ ....+..+++...+.. ......++||++++++++.++|.+.+....
T Consensus 123 ~~~~~i~l~~~~e~~~~Rl~~R~--~~~~~~~~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 123 NYDKLIVVYAPYEVCKERAIKRG--MSEEDFERRWKKQMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp GSSEEEEECCCHHHHHHHHHHTC--CCHHHHHHHHTTSCCHHHHGGGCSEECCCSSCHHHHHHHHHHHHHTTC
T ss_pred hCCEEEEEECCHHHHHHHHHHcC--CCHHHHHHHHHhCCChhHHHhcCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 36899999999999999997652 2223344444332211 111134789999999999988888776433
No 91
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.30 E-value=2.7e-11 Score=94.02 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=40.0
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD--NIWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.+..++++.+|++++.+|+..|+...+ ....+++...+..... ..-++|+++ +++++.+++.+.|..
T Consensus 118 ~~~~v~~~~~~~e~l~~Rl~~R~~~~~-~~i~~rl~~~~~~~~~~~~~d~vi~n~-~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 118 PALSIFILPPSIEALRERLIKRRQDDT-AIIEQRLALAREEMAHYKEFDYLVVND-NFDQAVQNLIHIISA 186 (205)
T ss_dssp TCEEEEEECSCHHHHHHHHHTCTTSCS-STHHHHHHHHHHHHTTGGGCSEEEECS-SHHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhcccCCCEEEECC-CHHHHHHHHHHHHHH
Confidence 454455555579999999987654322 2233344444333321 122444444 899999999998864
No 92
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.30 E-value=2.9e-11 Score=94.22 Aligned_cols=32 Identities=25% Similarity=0.129 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
+.++|+|.|++||||||+++.|++.|++..++
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 35689999999999999999999999876655
No 93
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.29 E-value=2.2e-11 Score=95.20 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=49.1
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHH--HHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHhh
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY--EKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTIK 216 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l~ 216 (227)
.+|.+|++++|+++..+|+..|. .+...+...++.... ++.....-++||++ ++++++..+|.+.+..++.
T Consensus 131 ~~D~vi~V~ap~e~r~~Rl~~Rd-g~s~eea~~ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 131 RCDRVLVVDCPVDTQIARVMQRN-GFTREQVEAIIARQATREARLAAADDVIVNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HCSEEEEEECCHHHHHHHHHHHH-CCCHHHHHHHHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHhcC-CCCHHHHHHHHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998653 233334444443321 11111134788999 9999999999999887764
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.26 E-value=2.1e-11 Score=94.69 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++|.+|+|+|++||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 678899999999999999999999876
No 95
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.26 E-value=1.1e-10 Score=90.69 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=43.6
Q ss_pred CCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHH-hh-CCeEEEcCCC-CHHHHHHHHHHHHH
Q psy16874 144 PKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE---NYEKL-KD-NIWIDIDADK-DIDTLGLIVKDIVI 212 (227)
Q Consensus 144 ~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~Id~~~-s~~~v~~~I~~~i~ 212 (227)
+.+|++|||++|++++.+|+..|.. ....+..+.+.. .|... .. ..+++||+++ +++++.++|.+.+.
T Consensus 134 ~~~d~~i~l~a~~e~~~~R~~~r~~-~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 134 PEAAHKFYLTASPEVRAWRRARERP-QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHTSS-SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCHHHHHHHHHhhcc-cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999865432 111222223322 12111 11 1458999995 99999999988763
No 96
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.26 E-value=1.8e-11 Score=94.73 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=40.0
Q ss_pred CCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHH-HHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 146 PDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAEN-YEKLKDNIWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 146 pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
.|.+||+++|++++.+|+.. ..... ++......-++||++++++++.++|.+.+..+
T Consensus 130 ~d~vi~v~a~~e~r~~Rli~------------~q~~~~~~~~~~~AD~vI~n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 130 CDHVITVVASRETILKRNRE------------ADRRLKFQEDIVPQGIVVANNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp CSEEEEEECCHHHHHHHCSS------------HHHHHTTCTTCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHH------------hcCCchhhhHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999921 00111 11111114578999999999999998888755
No 97
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=3.8e-11 Score=93.87 Aligned_cols=169 Identities=12% Similarity=0.163 Sum_probs=83.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCe-EEeeCCCCCCCc--------hHHHHHHHhhcCCCCHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPS-QFVNFPDRTIST--------GHIIDEYLRKKIELPDQAAHLLFS 75 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 75 (227)
++|.+|+|+||+||||||+++.|.+.++. .+..+ ...+.|..+... ...+...+..+..+.... +.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~----~~ 81 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAE----YV 81 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE----ET
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEE----Ec
Confidence 46889999999999999999999998753 22222 224434322111 112222222211000000 00
Q ss_pred hhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee-
Q psy16874 76 ANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK- 153 (227)
Q Consensus 76 ~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~- 153 (227)
...+.. ...+...+..|..+++ |-.+ .....+....+.+ .+||+.
T Consensus 82 ~~~yg~~~~~i~~~l~~g~~vil-----------------d~~~---------------~g~~~~~~~~~~~-~~i~i~~ 128 (208)
T 3tau_A 82 GNYYGTPLEYVEEKLAAGVDIFL-----------------EIEV---------------QGAMQVRKAMPEG-IFIFLTP 128 (208)
T ss_dssp TEEEEEEHHHHHHHHHTTCCEEE-----------------ECCH---------------HHHHHHHHHCTTS-EEEEEEC
T ss_pred cccCCCcHHHHHHHHHcCCeEEE-----------------EeeH---------------HHHHHHHHhCCCe-EEEEEeC
Confidence 000111 1345666778877777 5111 1111112222334 455555
Q ss_pred cCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 154 LNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DN-IWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 154 ~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~-~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
.+++++.+|+..|+.. ...+..+++..+..+.. .. .++++|. ++++++++|.++|...
T Consensus 129 ps~~~l~~Rl~~R~~~-~~e~i~~Rl~~~~~e~~~~~~~d~vivN~--~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 129 PDLSELKNRIIGRGTE-SMEVVEERMETAKKEIEMMASYDYAVVND--VVANAVQKIKGIVETE 189 (208)
T ss_dssp TTTTTSSCC--------CCHHHHHHHHHHHHHHHHGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhhccCCEEEECc--CHHHHHHHHHHHHHHH
Confidence 4589999999876432 22444455555443222 11 5555554 6999999999988643
No 98
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.25 E-value=2.6e-11 Score=99.80 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=82.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH-HhCCCCeEEeeCCCCCCCchHHHHHHHhhc-C----CCCHHHHHHHHHhhhhhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVNFPDRTISTGHIIDEYLRKK-I----ELPDQAAHLLFSANRWER 81 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~ 81 (227)
+++|+|+|+|||||||+++.|++.+ +..+++.+ .++..+... . .+........ ....
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-------------~~r~~~~~~~~g~~~~~~~~~~~~~----~~~~ 64 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-------------DYRQSIMAHEERDEYKYTKKKEGIV----TGMQ 64 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-------------HHHHHHTTSCCCC---CCHHHHHHH----HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-------------HHHHHhccCCcccccccchhhhhHH----HHHH
Confidence 4789999999999999999999864 33233222 222222110 0 1111111100 0001
Q ss_pred hhHHHHHH---HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHH
Q psy16874 82 EPTLTKLI---EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA 158 (227)
Q Consensus 82 ~~~i~~~~---~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~ 158 (227)
...+...+ ..|..+|+ |.+..+...+ ..+.++......++.+|||++|+++
T Consensus 65 ~~~~~~~l~~~~~g~~vi~-----------------d~~~~~~~~~---------~~l~~~~~~~~~~~~~i~l~~~~e~ 118 (301)
T 1ltq_A 65 FDTAKSILYGGDSVKGVII-----------------SDTNLNPERR---------LAWETFAKEYGWKVEHKVFDVPWTE 118 (301)
T ss_dssp HHHHHHHTTSCTTCCEEEE-----------------CSCCCCHHHH---------HHHHHHHHHTTCEEEEEECCCCHHH
T ss_pred HHHHHHHHhhccCCCEEEE-----------------eCCCCCHHHH---------HHHHHHHHHcCCcEEEEEEECCHHH
Confidence 13455566 66777777 8443321110 1122222222345689999999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHHHhhC----------CeEEEcCCCCHHH
Q psy16874 159 LQRRKGFGDERYEQTDFQRKVAENYEKLKDN----------IWIDIDADKDIDT 202 (227)
Q Consensus 159 ~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~----------~~~~Id~~~s~~~ 202 (227)
+.+|+..|.....+.+.+++..+.|+..... ..+++|.++++++
T Consensus 119 ~~~R~~~R~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~ 172 (301)
T 1ltq_A 119 LVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAK 172 (301)
T ss_dssp HHHHHHHCGGGCCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBC
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHhcccCCcceeccccccceEEEeCCCCccc
Confidence 9999976643333355555555666555321 3566777766544
No 99
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.24 E-value=8.7e-11 Score=90.26 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSANR 78 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
+.|+|+||+||||||+++.|.+.++.. ++++-+ ++.|..+..-| +.+.....++.-+.-+. +.-+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~----~~g~~ 77 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ----FSGNY 77 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE----ETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEE----EcCce
Confidence 348999999999999999998887532 344433 56554332222 23344444432100000 00111
Q ss_pred hhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC-CCCEEEEeecCH
Q psy16874 79 WER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP-KPDAVLLFKLNE 156 (227)
Q Consensus 79 ~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pd~vi~L~~~~ 156 (227)
+.. ...+...+.+|..+++ | .+.+.+.++....+ .+..++.+..+.
T Consensus 78 YGt~~~~v~~~l~~g~~vil-----------------~---------------id~~g~~~~k~~~~~~~~~Ifi~pps~ 125 (186)
T 1ex7_A 78 YGSTVASVKQVSKSGKTCIL-----------------D---------------IDMQGVKSVKAIPELNARFLFIAPPSV 125 (186)
T ss_dssp EEEEHHHHHHHHHHTSEEEE-----------------E---------------CCHHHHHHHHTCGGGCCEEEEEECSCH
T ss_pred eeeecceeeehhhCCCEEEe-----------------c---------------CCHHHHHHHHHhcccCceEEEEeCCCH
Confidence 211 2456777788888888 4 22222222222222 444566666778
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh---C--CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 157 EALQRRKGFGDERYEQTDFQRKVAENYEKLKD---N--IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 157 e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~---~--~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
+++.+|+..|+...+ ....+++..+-.++.. . ..++||. ++++++++|.++|.
T Consensus 126 e~L~~RL~~Rg~e~~-e~i~~Rl~~a~~e~~~~~~~~fD~vIvNd--dle~a~~~l~~iI~ 183 (186)
T 1ex7_A 126 EDLKKRLEGRGTETE-ESINKRLSAAQAELAYAETGAHDKVIVND--DLDKAYKELKDFIF 183 (186)
T ss_dssp HHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHTTTCSSEEEECS--SHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhccccCCcEEEECc--CHHHHHHHHHHHHH
Confidence 999999987653322 3344455544433321 1 4566654 68999988888763
No 100
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.23 E-value=1.1e-10 Score=93.04 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=44.3
Q ss_pred CCCEEEEeecCHHHHHHhc----CCCCCCcccHHHHHHHHH-HHHHH-------hhC-CeEEEcCC-CCHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRK----GFGDERYEQTDFQRKVAE-NYEKL-------KDN-IWIDIDAD-KDIDTLGLIVKDI 210 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~----~~r~~~~~~~~~~~~~~~-~~~~~-------~~~-~~~~Id~~-~s~~~v~~~I~~~ 210 (227)
..+++|||++|++++.+|+ ..|+......+....+.+ .+... ... ..++||++ .+++++.++|.+.
T Consensus 152 ~~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~ 231 (236)
T 1q3t_A 152 QAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAE 231 (236)
T ss_dssp GCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999996 333322121223333322 22211 111 34899998 5999999999988
Q ss_pred HHHH
Q psy16874 211 VIDT 214 (227)
Q Consensus 211 i~~~ 214 (227)
+...
T Consensus 232 l~~~ 235 (236)
T 1q3t_A 232 AEKR 235 (236)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8653
No 101
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.22 E-value=2.5e-10 Score=90.24 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=43.1
Q ss_pred CEEEEeecCHHHHHHhcCCCCCC-ccc-HHHHH----HHHHHHHHHhh-------CCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874 147 DAVLLFKLNEEALQRRKGFGDER-YEQ-TDFQR----KVAENYEKLKD-------NIWIDIDAD-KDIDTLGLIVKDIVI 212 (227)
Q Consensus 147 d~vi~L~~~~e~~~~R~~~r~~~-~~~-~~~~~----~~~~~~~~~~~-------~~~~~Id~~-~s~~~v~~~I~~~i~ 212 (227)
.++|||++|++++.+|+..+... .++ .+.++ .-...|+.+.. ...++||++ .+++++.+.|.+.+.
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~ 217 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR 217 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence 47999999999999999643222 111 12222 22224554321 145889987 699999999988886
Q ss_pred H
Q psy16874 213 D 213 (227)
Q Consensus 213 ~ 213 (227)
.
T Consensus 218 ~ 218 (223)
T 3hdt_A 218 L 218 (223)
T ss_dssp H
T ss_pred H
Confidence 3
No 102
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.12 E-value=2.4e-11 Score=95.42 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=42.2
Q ss_pred CCCEEEEeecCHHHHHHhcC----CCCCCcccHHHHHHHHHH-HHHH-------hhC-CeEEEcCC-CCHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKG----FGDERYEQTDFQRKVAEN-YEKL-------KDN-IWIDIDAD-KDIDTLGLIVKDI 210 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~----~r~~~~~~~~~~~~~~~~-~~~~-------~~~-~~~~Id~~-~s~~~v~~~I~~~ 210 (227)
.++++|||++|++++.+|+. .|+......+....+... +... ... ..++||++ .+++++.+.|.+.
T Consensus 135 ~~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~ 214 (219)
T 2h92_A 135 DADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAM 214 (219)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHH
Confidence 46899999999999999963 222111112233333221 1111 111 44899988 4999999999887
Q ss_pred HH
Q psy16874 211 VI 212 (227)
Q Consensus 211 i~ 212 (227)
+.
T Consensus 215 l~ 216 (219)
T 2h92_A 215 VS 216 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 103
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.06 E-value=3.1e-09 Score=81.03 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++.+|+|+||+||||||+++.|...+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3577999999999999999999998764
No 104
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.04 E-value=3.7e-10 Score=89.50 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=18.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHH-HHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLV-DYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~-~~l~ 33 (227)
++|.+|+|+||+||||||+++.|+ ..+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 457899999999999999999999 7664
No 105
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.03 E-value=1.7e-09 Score=82.94 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHhh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSAN 77 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (227)
|.+|+|.||+||||||+++.|...+.. .++.+.+ .+.|..+...| ..+..+...+..+ .+. .+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~-e~~---~~~~~ 76 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFI-EWA---QFSGN 76 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE-EEE---EETTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhccee-eEE---EEece
Confidence 457999999999999999999998763 3555544 33343221111 1122222111100 000 00000
Q ss_pred hhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC-CCCCCCEEEEeecC
Q psy16874 78 RWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK-GLPKPDAVLLFKLN 155 (227)
Q Consensus 78 ~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pd~vi~L~~~ 155 (227)
.+.. ...+...+..|..+++ |- +.+-...+.. ..+.+ .+||+.+|
T Consensus 77 ~yg~~~~~i~~~l~~g~~~il-----------------~~---------------~~~g~~~l~~~~~~~~-~~i~i~~p 123 (186)
T 3a00_A 77 YYGSTVASVKQVSKSGKTCIL-----------------DI---------------DMQGVKSVKAIPELNA-RFLFIAPP 123 (186)
T ss_dssp EEEEEHHHHHHHHHTTCEEEE-----------------EC---------------CHHHHHHHHTCGGGCC-EEEEEECS
T ss_pred eccCcHHHHHHHHHcCCeEEE-----------------EE---------------cHHHHHHHHHhcCCCe-EEEEEECc
Confidence 0000 1356666777877776 41 1011111111 12223 56888886
Q ss_pred H-HHHHHhcCCCCCCcccHHHHHHHHHHHHHHh----hC-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 156 E-EALQRRKGFGDERYEQTDFQRKVAENYEKLK----DN-IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 156 ~-e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~----~~-~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
. +++.+|+..|+...+ ....+++..+..+.. .. .++++| + +.+++++++.++|.
T Consensus 124 ~~~~l~~Rl~~Rg~~~~-~~i~~rl~~~~~~~~~~~~~~~d~vi~n-d-~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 124 SVEDLKKRLEGRGTETE-ESINKRLSAAQAELAYAETGAHDKVIVN-D-DLDKAYKELKDFIF 183 (186)
T ss_dssp CC----------------------------------CCCCSEEEEC-S-SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhhcccCCcEEEEC-c-CHHHHHHHHHHHHH
Confidence 5 999999987653322 122223333222221 11 455554 4 78998888888774
No 106
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.00 E-value=5e-10 Score=91.85 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
..|.+|+|.|+|||||||+++.|++.++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999999999874
No 107
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.98 E-value=8.3e-09 Score=79.79 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCe-EEeeCCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPS-QFVNFPD 46 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~ 46 (227)
.++.+|+|.||+||||||+++.|.+.++. ...++ ..++.|.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~ 59 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR 59 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc
Confidence 46789999999999999999999987652 12232 3355554
No 108
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.96 E-value=5.4e-11 Score=102.56 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=77.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL 85 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (227)
+.+.+|+|+|+|||||||+++.|++.+++.+++.+.++ .+. . ....+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------~~~----~-----------------------~~~~~ 302 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------SWQ----R-----------------------CVSSC 302 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------SHH----H-----------------------HHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------HHH----H-----------------------HHHHH
Confidence 45789999999999999999999998765444422211 000 0 01244
Q ss_pred HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874 86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF 165 (227)
Q Consensus 86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~ 165 (227)
...+..+..||+ |........+ ..+.++......+..+|||++|.+++.+|+..
T Consensus 303 ~~~l~~g~~vIi-----------------D~~~~~~~~r---------~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~ 356 (416)
T 3zvl_A 303 QAALRQGKRVVI-----------------DNTNPDVPSR---------ARYIQCAKDAGVPCRCFNFCATIEQARHNNRF 356 (416)
T ss_dssp HHHHHTTCCEEE-----------------ESCCCSHHHH---------HHHHHHHHHHTCCEEEEEECCCHHHHHHHHHH
T ss_pred HHHHhcCCcEEE-----------------eCCCCCHHHH---------HHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHh
Confidence 455667777777 6332211111 11111222222455799999999999999975
Q ss_pred CCC----C-cccHHHHHHHHHHHHHHhhC----CeEEEcCC
Q psy16874 166 GDE----R-YEQTDFQRKVAENYEKLKDN----IWIDIDAD 197 (227)
Q Consensus 166 r~~----~-~~~~~~~~~~~~~~~~~~~~----~~~~Id~~ 197 (227)
|.. . ....+.+.++.+.|+..... .++.|+-.
T Consensus 357 R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~~~ 397 (416)
T 3zvl_A 357 REMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFR 397 (416)
T ss_dssp HHHHCTTCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEECCC
T ss_pred hcccCCCcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEecc
Confidence 421 1 12356666777666655432 35555544
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.94 E-value=2.5e-09 Score=81.93 Aligned_cols=66 Identities=8% Similarity=-0.035 Sum_probs=42.4
Q ss_pred EEEEeecCHHHHHHhcCCCCCCc-ccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 148 AVLLFKLNEEALQRRKGFGDERY-EQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 148 ~vi~L~~~~e~~~~R~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
.++++.++.+++.+|+..+.... .+.+..+.+.+.+..+.....++||++ .+++++++.|.+.+..
T Consensus 108 ~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~~~l~~ 175 (191)
T 1zp6_A 108 HYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQS 175 (191)
T ss_dssp EEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHH
T ss_pred EEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHHHHHHHh
Confidence 58999999999999987654333 233333333333332222123567776 6889998888888763
No 110
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.91 E-value=3.4e-08 Score=76.53 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
.++.+|+|+|++||||||+++.|+..+...+.++...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 5678999999999999999999999998777777654
No 111
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.87 E-value=1.7e-08 Score=77.19 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+.+|+|+|++||||||+++.|+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 568999999999999999999873
No 112
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.87 E-value=1.6e-08 Score=78.65 Aligned_cols=28 Identities=39% Similarity=0.446 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|.+|+|+|++||||||+++.|+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999999999887
No 113
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.86 E-value=2.7e-08 Score=88.43 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=70.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCC-CCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN-IPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT 84 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
.++.+|+|+|++||||||+++.|+..+...+ .++..+. ++.+...+..+..+........+. + ....
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD--------gD~~~~~l~~~l~f~~~~r~~~~r--~--i~~v 434 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD--------GDIVRRHLSSELGFSKAHRDVNVR--R--IGFV 434 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES--------SHHHHHHTTSSCCCSHHHHHHHHH--H--HHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC--------CcHHHHhhccccCCCHHHHHHHHH--H--HHHH
Confidence 3678999999999999999999999997543 2333332 222222111111122211000000 0 0011
Q ss_pred HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG 164 (227)
Q Consensus 85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 164 (227)
.......+.++++ .........+.... +++. ... ..++|||++|.+++.+|..
T Consensus 435 ~q~l~~~~~ivi~-----------------~~~~~~~~~r~~~r-----~lL~----~~g-~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 435 ASEITKNRGIAIC-----------------APIAPYRQTRRDVR-----AMIE----AVG-GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HHHHHHTTCEEEE-----------------CCCCCCHHHHHHHH-----HHHH----TTS-EEEEEEECC----------
T ss_pred HHHHHhcCCEEEE-----------------ecCCccHHHHHHHH-----HHHH----HcC-CEEEEEEcCCHHHHHHhcc
Confidence 2222345666666 21100000000010 2222 111 2479999999999999975
Q ss_pred CCCCCcccHHHHHHHHHHHHH---Hhh--CCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874 165 FGDERYEQTDFQRKVAENYEK---LKD--NIWIDIDAD-KDIDTLGLIVKDIVID 213 (227)
Q Consensus 165 ~r~~~~~~~~~~~~~~~~~~~---~~~--~~~~~Id~~-~s~~~v~~~I~~~i~~ 213 (227)
+ +.+.+. ....+...+.. +.. ..-++||++ .+++++.++|.+.|..
T Consensus 488 r--~l~~~~-~~~~i~~l~~~r~~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 488 K--GLYAKA-RAGLIPEFTGVSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEH 539 (552)
T ss_dssp ----------------------CCCCCCSSCSEEECCSSCCHHHHHHHHHHHHHH
T ss_pred c--cccccc-cHhHHHHHHhccccccCCCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 3 333211 01112222211 111 134788987 7999999998888753
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.73 E-value=3.7e-07 Score=71.79 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=25.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++|.+++|.||+||||||+++.|...+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46788999999999999999999998765
No 115
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.72 E-value=8.4e-08 Score=84.80 Aligned_cols=37 Identities=38% Similarity=0.512 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+.+|+++|+|||||||+++.|++.+++.++++..+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 4678999999999999999999999999999887665
No 116
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.70 E-value=9.5e-09 Score=82.58 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
..|++|+|.|+|||||||+++.|++.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578999999999999999999999886
No 117
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.68 E-value=9.3e-07 Score=68.24 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++.+++|.||+||||||+++.|...+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4578899999999999999999998775
No 118
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.65 E-value=9.4e-09 Score=82.71 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
++|+|+|++||||||+++.|++.++...++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 47999999999999999999999876544443
No 119
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.64 E-value=9.3e-08 Score=73.91 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=27.3
Q ss_pred CCCCCCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 1 MASQIPR-GAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 1 m~~~~~~-~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
|+..+.. .++|+|+|.+||||+|+++.|.+.++..
T Consensus 3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~~~g~~ 38 (202)
T 3ch4_B 3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGAD 38 (202)
T ss_dssp CCTTBCCCSEEEEEEECTTSSHHHHHHHHHHHHCTT
T ss_pred ccccccCCCEEEEEECCCCCChHHHHHHHHHHcCCC
Confidence 4443233 4689999999999999999999988653
No 120
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.52 E-value=8e-07 Score=70.83 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+++.+|.|+|++||||||+++.|+..++..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 567899999999999999999999988654
No 121
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.49 E-value=2.1e-08 Score=83.46 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
++++|+|.||+||||||++..|++.++...++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 45689999999999999999999988753333
No 122
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.23 E-value=3.8e-05 Score=62.95 Aligned_cols=163 Identities=9% Similarity=0.075 Sum_probs=84.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCe-EEeeCCCCCCC---------chHHHHHHHhhcCCCCHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPS-QFVNFPDRTIS---------TGHIIDEYLRKKIELPDQAAHLLF 74 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
+.+++|+|.|| ||+|+++.|.+.+.. -++++ .+++.|..+.. ..+.+.....++.-+.- .. +
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~-~~---~ 175 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEA-GQ---Y 175 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEE-EE---E
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEE-EE---E
Confidence 45678999998 799999999987752 23444 34565543321 12233333333321000 00 0
Q ss_pred Hhhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee
Q psy16874 75 SANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK 153 (227)
Q Consensus 75 ~~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~ 153 (227)
..+.+.. ...+...+.+|..+++ |- +.+.+.++......| ++||+.
T Consensus 176 ~g~~YGt~~~~V~~~~~~G~~vil-----------------di---------------d~~g~~~l~~~~~~p-i~IfI~ 222 (295)
T 1kjw_A 176 NSHLYGTSVQSVREVAEQGKHCIL-----------------DV---------------SANAVRRLQAAHLHP-IAIFIR 222 (295)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEEEE-----------------CC---------------CTTHHHHHHHTTCCC-EEEEEC
T ss_pred cCcEeeeeHHHHHHHHhcCCeEEE-----------------Ee---------------CHHHHHHHHhcccCC-eEEEEE
Confidence 0011111 2457777888888888 51 112222222222245 888888
Q ss_pred cC-HHHHHHhcCCCCCCcccHHHHHHHHHHH--HH-HhhC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 154 LN-EEALQRRKGFGDERYEQTDFQRKVAENY--EK-LKDN-IWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 154 ~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~-~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
.| .+++.+ +..|+.. .+..+++..+. +. .... .. +|+++ +++++++++.++|...
T Consensus 223 pps~~~L~~-L~~R~t~---~~i~~rl~~a~~~e~~~~~~fd~-vivNd-~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 223 PRSLENVLE-INKRITE---EQARKAFDRATKLEQEFTECFSA-IVEGD-SFEEIYHKVKRVIEDL 282 (295)
T ss_dssp CSSHHHHHH-HCTTSCH---HHHHHHHHHHHHHHHHHGGGCSE-EECCS-SHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH-HHhcCCH---HHHHHHHHHHHHHHHhccccCeE-EEECc-CHHHHHHHHHHHHHhc
Confidence 66 666665 7654321 22333444332 11 1111 34 45544 8999999988888643
No 123
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.22 E-value=5.9e-06 Score=68.52 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.++.+|.|.|++||||||+++.|...+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45779999999999999999999998874
No 124
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.22 E-value=2.6e-05 Score=63.79 Aligned_cols=166 Identities=8% Similarity=0.057 Sum_probs=87.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEE-eeCCCCCCCc---------hHHHHHHHhhcCCCCHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQF-VNFPDRTIST---------GHIIDEYLRKKIELPDQAAHLLF 74 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
..++.|+|+|| ||+|+.+.|.+.++.. ++++-+ ++.|..+..- .+.+.....++.-+ .+.. +
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~fl-E~a~---~ 170 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFI-EAGQ---Y 170 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEE-EEEE---E
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceE-EEEE---E
Confidence 34567889988 5999999999988653 455544 5555433221 12334444333210 0000 0
Q ss_pred Hhhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee
Q psy16874 75 SANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK 153 (227)
Q Consensus 75 ~~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~ 153 (227)
.-+.+.. ...+...+.+|..+++ | .+.+.+.++....+.| ++||+.
T Consensus 171 ~gn~YGT~~~~V~~~~~~gk~viL-----------------d---------------id~qg~~~lk~~~~~p-i~IFI~ 217 (292)
T 3tvt_A 171 NDNLYGTSVASVREVAEKGKHCIL-----------------D---------------VSGNAIKRLQVAQLYP-VAVFIK 217 (292)
T ss_dssp TTEEEEEEHHHHHHHHHHTCEEEE-----------------C---------------CCTHHHHHHHHTTCCC-EEEEEC
T ss_pred ccceeEEehHHHHHHHHcCCcEEE-----------------e---------------ccchhhhhcccccccc-eEEEEE
Confidence 0011111 2467777888988888 5 2223333333344455 566776
Q ss_pred c-CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874 154 L-NEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDT 214 (227)
Q Consensus 154 ~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~ 214 (227)
. +.+++.+|+..++..-. .....+..+.-..+... ..+++| .+.++++++|.++|...
T Consensus 218 PpS~e~L~~r~~~r~~e~~-~~~~~r~~k~e~e~~~~fD~vIvN--ddle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 218 PKSVDSVMEMNRRMTEEQA-KKTYERAIKMEQEFGEYFTGVVQG--DTIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp CSCHHHHHHTCTTSCTTHH-HHHHHHHHHHHHHHTTTCSEEECC--SSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCchhH-HHHHHHHHHHHHhhhhhCCEEEEC--cCHHHHHHHHHHHHHHh
Confidence 5 56778887765433211 22333333222222222 344443 36899999888888643
No 125
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.20 E-value=4.5e-05 Score=59.61 Aligned_cols=28 Identities=29% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.++|.+++|.||+||||||+++.|...+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568899999999999999999999876
No 126
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.20 E-value=4.3e-06 Score=72.97 Aligned_cols=37 Identities=38% Similarity=0.477 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+.+|+++|.|||||||+++.|++.+++.+++++.+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 4668999999999999999999999999888887755
No 127
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.12 E-value=1.2e-06 Score=71.69 Aligned_cols=37 Identities=11% Similarity=0.284 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++++|+|+|++||||||+++.|++.++..++++..+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~ 40 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 40 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence 5778999999999999999999999986666654444
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.06 E-value=5.9e-06 Score=64.05 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.+|+|.|++||||||+++.|+..+...|..+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~ 57 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 46789999999999999999999999986554454443
No 129
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.06 E-value=6.1e-06 Score=62.08 Aligned_cols=38 Identities=24% Similarity=0.133 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+.++|.|.|++||||||++..|...+...++++..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 35689999999999999999999999988999887653
No 130
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.92 E-value=1.5e-05 Score=60.19 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..+|+|.|++||||||+++.|...+...++++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 567999999999999999999999988888887654
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=2.1e-05 Score=59.35 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~ 42 (227)
+++..++|.|++||||||+++.++..+. ..|..+..+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3467899999999999999999999886 556655443
No 132
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.87 E-value=3.5e-06 Score=70.25 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
++|+|.||+||||||++..|++.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~ 34 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGE 34 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCc
Confidence 589999999999999999999998743
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.86 E-value=1.3e-05 Score=65.64 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+++.+|+|.|++||||||+++.|...++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999999753
No 134
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.80 E-value=5.4e-06 Score=68.67 Aligned_cols=33 Identities=30% Similarity=0.253 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
+++|+|+||+||||||++..|++.++...++++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 468999999999999999999999876554443
No 135
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.74 E-value=2.1e-05 Score=59.67 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+.++|.|++||||||+++.|+..++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999886
No 136
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.74 E-value=7.5e-06 Score=67.30 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
.+.+|+|.||+||||||++..|++.++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~ 37 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVE 37 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCc
Confidence 46789999999999999999999998643
No 137
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.74 E-value=1.7e-05 Score=69.74 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh-CC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK-NN 36 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~ 36 (227)
++++|+|+|++||||||+++.|++.|+. .|
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g 424 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGG 424 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCS
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999997 53
No 138
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.73 E-value=9.1e-05 Score=61.59 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++|.+|+|.|++||||||+++.|+..+...+.++.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 468899999999999999999999999888878766443
No 139
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.72 E-value=7e-05 Score=57.40 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=36.1
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
|..+..++.+++++|++||||||.+-.++.++...+.++..+.
T Consensus 1 ~~~~~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 1 MYRPKDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp -CCCTTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3333456899999999999999999999999998999987765
No 140
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.72 E-value=4.6e-05 Score=62.77 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++.+|.|+|++||||||+++.|+..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999999886
No 141
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.72 E-value=2.9e-05 Score=64.17 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..+|.+|+|.|++||||||+++.|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 356889999999999999999999998875
No 142
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.71 E-value=4.9e-05 Score=59.37 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+..++|.|++|+||||+++.+++.+...+.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4667999999999999999999999988887776654
No 143
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.70 E-value=7.8e-06 Score=67.32 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
++++|+|.||+||||||++..|++.++..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~ 30 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGE 30 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccc
Confidence 36789999999999999999999988743
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.67 E-value=4.2e-05 Score=56.20 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+..++|.|++||||||+++.++..+...|.++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 4567999999999999999999998877777766654
No 145
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.67 E-value=2.3e-05 Score=58.79 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKL 28 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L 28 (227)
++|-+++|.|++||||||+++.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 46889999999999999999863
No 146
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.65 E-value=2.7e-05 Score=60.23 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|.+++|.|++||||||+++.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999999998764
No 147
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.65 E-value=3.3e-05 Score=58.18 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++.|.|++||||||+++.|...+...++++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~ 37 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVK 37 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE
Confidence 46999999999999999999999998887776654
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.63 E-value=8.8e-05 Score=61.07 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+|.+|+|+|++||||||++..|+..+...+.++....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45789999999999999999999999988887876644
No 149
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.62 E-value=3.9e-05 Score=62.73 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=26.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
+.|..+.|.||||+|||++++.|++.++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3466788999999999999999999996533
No 150
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.62 E-value=0.00017 Score=59.26 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|.+|+|.|++||||||+++.|+..+...+-++....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5779999999999999999999999987777776544
No 151
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.61 E-value=4.8e-05 Score=56.50 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+++-+++|.|+.||||||+++.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999999999987
No 152
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.60 E-value=0.00016 Score=66.30 Aligned_cols=163 Identities=9% Similarity=0.070 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCCCCCCc---------hHHHHHHHhhcCCCCHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPDRTIST---------GHIIDEYLRKKIELPDQAAHLLF 74 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
..+++|+|.|| ||+|+++.|.+.+.. -.+++-+ ++.|..+..- .+.+...+.++.-+ . ..-+
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~fl-E---~~~~ 601 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFI-E---AGQY 601 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCce-E---EEEE
Confidence 45678999999 499999999987752 2334433 5544322211 12222333322210 0 0000
Q ss_pred Hhhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee
Q psy16874 75 SANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK 153 (227)
Q Consensus 75 ~~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~ 153 (227)
.-+.+.. ...+...+.+|..+++ | .+.+.+.++......| ++||+.
T Consensus 602 ~g~~YGt~~~~v~~~~~~g~~~il-----------------d---------------i~~~~~~~l~~~~~~p-~~ifi~ 648 (721)
T 2xkx_A 602 NSHLYGTSVQSVREVAEQGKHCIL-----------------D---------------VSANAVRRLQAAHLHP-IAIFIR 648 (721)
T ss_pred CCccceeeHHHHHHHHHCCCcEEE-----------------e---------------CCHHHHHHHHhcccCC-EEEEEe
Confidence 0111111 2457777788888887 5 1112222232222345 888888
Q ss_pred cC-HHHHHHhcCCCCCCcccHHHHHHHHHHHH-HH-hhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874 154 LN-EEALQRRKGFGDERYEQTDFQRKVAENYE-KL-KDN-IWIDIDADKDIDTLGLIVKDIVID 213 (227)
Q Consensus 154 ~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~Id~~~s~~~v~~~I~~~i~~ 213 (227)
.| .+++.+ +..|+. ..+..+++..+.+ +. ... -.++|+++ +++++++++.++|..
T Consensus 649 pps~~~L~~-l~~R~t---~~~~~~rl~~a~~~e~~~~~~fd~vi~Nd-~l~~a~~~l~~~i~~ 707 (721)
T 2xkx_A 649 PRSLENVLE-INKRIT---EEQARKAFDRATKLEQEFTECFSAIVEGD-SFEEIYHKVKRVIED 707 (721)
T ss_pred CCcHHHHHH-HhccCC---HHHHHHHHHHHHHHHHhccccCcEEEECc-CHHHHHHHHHHHHHh
Confidence 66 455555 655432 1233334443321 11 111 12345544 789988888888764
No 153
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=8.7e-05 Score=56.83 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..++|.|++|+||||++..++..+...+.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67899999999999999999999987777776554
No 154
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.59 E-value=0.00015 Score=62.58 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+|.+|++.|++||||||++..|+..+...|.++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 47899999999999999999999999999999877553
No 155
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.57 E-value=0.0001 Score=60.53 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+|.+|+|.|+.||||||+++.|+..+...+-++....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46789999999999999999999999987776766544
No 156
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.55 E-value=9.7e-05 Score=63.62 Aligned_cols=38 Identities=32% Similarity=0.345 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+|.+|++.|++||||||++..|+..+...+.++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 47899999999999999999999999999999876553
No 157
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.53 E-value=0.0001 Score=56.06 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
++.+++++|++||||||++-.++..+...+.++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367899999999999999988888777677766553
No 158
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.52 E-value=9.7e-05 Score=56.49 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
.+|.|.|++||||||+++.|+..+...|+.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g 34 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCCEEEcC
Confidence 468999999999999999999988755655543
No 159
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.51 E-value=0.00016 Score=56.82 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=33.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++.+++++|++||||||.+-.++..+...+..+..+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 35789999999999999999999999988898887754
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.51 E-value=0.00026 Score=57.98 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~~ 44 (227)
++.+|+|.|+.||||||++..|+..+.. .|.++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 5779999999999999999999999985 7888876553
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.50 E-value=0.00011 Score=59.03 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.++.+++|.||+||||||+++.|...+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 45779999999999999999999998865
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=0.00013 Score=54.58 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+..++|.|++|+||||+++.+++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3566899999999999999999999876
No 163
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.49 E-value=0.00015 Score=60.75 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=31.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+.+|+|.|+|||||||+.+.|...+...+.++..+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 3778999999999999999999998877777765543
No 164
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.47 E-value=0.00017 Score=60.45 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++...|+|+|.+||||||++..|+..+...+.++..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 35678999999999999999999999988888876643
No 165
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.46 E-value=0.00011 Score=57.07 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=30.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.+++|.|++||||||++..++..+...+.++..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35678999999999999999999977765566766654
No 166
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.46 E-value=0.00017 Score=60.65 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+|.+|+|.|+.||||||+++.|+..+...+-++....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 46789999999999999999999999987776765544
No 167
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.46 E-value=3.7e-05 Score=65.45 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
+++|+|.||+||||||++..|++.++...++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 4589999999999999999999999754333
No 168
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.46 E-value=9e-05 Score=60.92 Aligned_cols=28 Identities=29% Similarity=0.608 Sum_probs=25.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+++.+++|.|++||||||+++.|...+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3578899999999999999999999987
No 169
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.46 E-value=5e-05 Score=60.35 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=40.7
Q ss_pred CCCEEEEeecCHHHHHHhcCCCCCC---cccHHHHHHHHHHH-HH-HhhC-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874 145 KPDAVLLFKLNEEALQRRKGFGDER---YEQTDFQRKVAENY-EK-LKDN-IWIDIDADKDIDTLGLIVKDIVI 212 (227)
Q Consensus 145 ~pd~vi~L~~~~e~~~~R~~~r~~~---~~~~~~~~~~~~~~-~~-~~~~-~~~~Id~~~s~~~v~~~I~~~i~ 212 (227)
..|.+|+.+|+.++..+|+.+|+.. +..... .++.... +. .... .-++|+++++++++..+|.+.+.
T Consensus 167 ~~d~VvVvdv~~~~qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~gsle~l~~qV~~ll~ 239 (241)
T 1dek_A 167 GYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLK 239 (241)
T ss_dssp SCSEEEECCCCSHHHHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECCSCHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCcHHHHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4689999999999999998765321 111000 0111000 00 0001 34788999999999888887764
No 170
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.45 E-value=0.0003 Score=54.66 Aligned_cols=39 Identities=18% Similarity=0.070 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..++.+++++|++||||||.+-.++..+...+.++..+.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 356889999999999999999999999999999998876
No 171
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.45 E-value=0.00017 Score=62.89 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
.+|.+|+|.|+.||||||+++.|+..+...+-++...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 5688999999999999999999999998777676554
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.42 E-value=0.00024 Score=58.77 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=34.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
.++.+|+|+|++||||||++..|+..+...+.++.....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 457899999999999999999999999888888876553
No 173
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.42 E-value=0.00021 Score=59.64 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
.++.+++|.|++||||||+.+.|...+...+.++..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i 88 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV 88 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence 568899999999999999999999988776666654
No 174
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.40 E-value=0.00011 Score=62.23 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++.+|+|.|++||||||+++.|+..++
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5678999999999999999999998763
No 175
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.38 E-value=0.0001 Score=59.71 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
++|.||+||||||+++.|+..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999987653
No 176
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.38 E-value=8.8e-05 Score=58.69 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999998887644
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.38 E-value=8.9e-05 Score=58.45 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=26.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~ 42 (227)
+++-+++|.|++||||||+++.|+...- ..+-.+..+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~ 65 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3577999999999999999999985332 233344443
No 178
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.37 E-value=0.00025 Score=57.69 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 43 (227)
.++-+++|.|++||||||++..|+..+... |.++..+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467899999999999999999999988765 66776654
No 179
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.35 E-value=0.00017 Score=53.83 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+..++|.|++|+||||+++.+++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556899999999999999999999865
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00024 Score=55.83 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++.++.|.|++||||||++..++..+-..+..+.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5678999999999999999888877766677777755
No 181
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.34 E-value=0.00011 Score=57.24 Aligned_cols=28 Identities=29% Similarity=0.157 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+++-++.|.|++||||||+++.|+..+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3577999999999999999999987543
No 182
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.34 E-value=0.00028 Score=57.51 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~ 37 (227)
.+..++|.|+||+||||+++.+++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3457999999999999999999999977544
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.33 E-value=0.00012 Score=58.15 Aligned_cols=28 Identities=21% Similarity=0.056 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+.-|+|.|+||+||||+++.+++.++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999998754
No 184
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.32 E-value=0.00028 Score=61.95 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++.+|+|+|++||||||++..|+..+...|.++..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34678999999999999999999999998888886654
No 185
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.30 E-value=0.0014 Score=53.73 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.++.|+|+|| ||+|+.+.|.+.++.
T Consensus 144 ~~RPvVl~GP---~k~~l~~~L~~~~P~ 168 (308)
T 3kfv_A 144 FKRPVVILGP---VADIAMQKLTAEMPD 168 (308)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTT
T ss_pred CCCeEEEeCc---cHHHHHHHHHHhCcc
Confidence 3456899999 799999999887654
No 186
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.30 E-value=0.00015 Score=57.68 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|.|++||||||+++.++..++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998765
No 187
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.29 E-value=0.0001 Score=57.94 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+-.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357789999999999999998887644
No 188
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.29 E-value=0.00013 Score=57.80 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999999887543
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.28 E-value=0.00026 Score=58.40 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+..++|.|++|+||||+++.+++.+...+.++..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456899999999999999999999876666666554
No 190
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.28 E-value=0.00019 Score=57.08 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.-++|.|++|+||||+++.|+..++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 445899999999999999999998753
No 191
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.26 E-value=0.00016 Score=57.51 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|+.||||||+.+.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999987554
No 192
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.26 E-value=0.00013 Score=56.09 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++.|+|+|++||||||++..|++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 367899999999999999999988754
No 193
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.26 E-value=0.00023 Score=52.77 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=23.5
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
|..+..+...|+|.|.+||||||+++.|...
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 4333344567999999999999999998764
No 194
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.26 E-value=0.00036 Score=59.88 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=30.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 45 (227)
++.+|+|+|+.||||||+++.|...+....-.+.....|
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 466899999999999999999999887654455554444
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.25 E-value=0.00042 Score=55.10 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+..++++.|.+||||||++..|+..+. .+.++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 467899999999999999999999998 888886655
No 196
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.25 E-value=0.00031 Score=58.98 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 43 (227)
+-+|+|+|++||||||+.+.|...++.. +-.+....
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 4589999999999999999999988754 33333333
No 197
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.24 E-value=0.00029 Score=58.98 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
.+.|+|.|++||||||+++.|++.++...
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34699999999999999999999887644
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.24 E-value=0.00044 Score=57.70 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=32.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++.+|+|.|++||||||+++.|+..+...+.++..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46788999999999999999999999887777775543
No 199
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.24 E-value=0.00016 Score=58.22 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+.+.|+..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999887654
No 200
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.23 E-value=0.0011 Score=56.38 Aligned_cols=26 Identities=12% Similarity=-0.161 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.+++|+|.||+| +|+++.|.+.++.
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~ 255 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPD 255 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCcc
Confidence 4578899999998 8999999887653
No 201
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.23 E-value=0.00038 Score=58.46 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++.++.|.|+|||||||++..++..+...+..+.++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 57799999999999999999999988877777766553
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.22 E-value=0.00042 Score=56.47 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
..++|.|++|+||||+++.|++.+...+.++..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4799999999999999999999987655454443
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.22 E-value=0.00051 Score=59.19 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~~ 44 (227)
.++.+|+|.|+.||||||++..|+..+... |.+|..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 347789999999999999999999999998 999877553
No 204
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.22 E-value=0.00046 Score=56.79 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~ 43 (227)
+..++|.|++|+|||+++..++..+. ..+.++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46789999999999999999999998 8888887655
No 205
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.22 E-value=0.00025 Score=54.97 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+..++|.|++|+||||+++.+++.+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4579999999999999999999988754
No 206
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.21 E-value=0.00014 Score=59.00 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+-.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357789999999999999998887654
No 207
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.21 E-value=0.00017 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+..+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 467799999999999999999887654
No 208
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.21 E-value=0.00015 Score=57.18 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|.+++|.|+.||||||+.+.|+..+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3577899999999999999999887553
No 209
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.21 E-value=0.00014 Score=57.92 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++|-+++|.|+.||||||+++.|+..+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357789999999999999998887654
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.21 E-value=0.00019 Score=58.74 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+.+..|+|.|+||+||||+++.|+..++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3456799999999999999999999875
No 211
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.21 E-value=0.0002 Score=55.39 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+...++|.||||+||||++..|++.+..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3446999999999999999999998853
No 212
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.20 E-value=0.00018 Score=57.85 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++|-+++|.|+.||||||+.+.|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467799999999999999999988654
No 213
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.20 E-value=0.00018 Score=58.21 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|+.||||||+++.|+..+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577999999999999999998877543
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.20 E-value=0.00019 Score=59.72 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..++|.||+|+||||+++.++..++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 56899999999999999999998854
No 215
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.20 E-value=0.00022 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+|-+++|.|+.||||||+++.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999988864
No 216
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.20 E-value=0.00018 Score=57.63 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+.+.|+-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999887644
No 217
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.20 E-value=0.00015 Score=58.45 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3577999999999999999998887554
No 218
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.19 E-value=0.0002 Score=57.55 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..+..++|.|++|+||||+++.+++.++.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34667999999999999999999998654
No 219
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.19 E-value=0.00029 Score=59.58 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=26.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
.++.+|+|+|++||||||+++.|...+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 457789999999999999999999988753
No 220
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.19 E-value=0.00023 Score=54.95 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=28.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++.++.|.|++||||||++..++. ..+..+.++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 4578999999999999999999998 3355566554
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00017 Score=62.11 Aligned_cols=32 Identities=19% Similarity=0.083 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
.|+=|.+.||||+|||++++.++..++...+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 35668999999999999999999998764433
No 222
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.18 E-value=0.00021 Score=57.60 Aligned_cols=28 Identities=29% Similarity=0.195 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+.-++|.|+||+||||+++.+++.++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4556999999999999999999998754
No 223
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.18 E-value=0.00023 Score=56.85 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+|-+++|.|+.||||||+.+.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35778999999999999999988864
No 224
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.18 E-value=0.00016 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++|-+++|.|+.||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357789999999999999999887644
No 225
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.17 E-value=0.00016 Score=57.94 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++|-+++|.|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457799999999999999999887644
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.17 E-value=0.00018 Score=62.03 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++.+|+|.|++||||||++..|+..+...|.++..+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999999999999999999999987787876644
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00019 Score=61.69 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
.|+=|.+.||||+|||++++.++..++...+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 35568999999999999999999998764433
No 228
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.17 E-value=0.00029 Score=52.27 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=21.2
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
|.....+...|+|.|.+||||||+++.|..
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHh
Confidence 433334456799999999999999988875
No 229
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.16 E-value=0.00014 Score=56.72 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+.+.|+..+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999887644
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.16 E-value=0.00071 Score=55.36 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+.+|++.|++|+||||++..|+..+...+.++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7789999999999999999999999888888877554
No 231
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.16 E-value=0.00023 Score=57.82 Aligned_cols=27 Identities=19% Similarity=0.157 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..++|.|+||+||||+++.+++.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 567999999999999999999998753
No 232
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.16 E-value=0.00065 Score=55.51 Aligned_cols=38 Identities=29% Similarity=0.292 Sum_probs=33.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++.+|+|+|+.||||||++..|+..+...+.++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 57789999999999999999999999888888876553
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.15 E-value=0.00025 Score=57.19 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|.|++||||||+++.|+..++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999998765
No 234
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00019 Score=61.79 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~ 37 (227)
.|+=|.+.||||+|||++++.|+..++...+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 3566899999999999999999999876433
No 235
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.13 E-value=0.00023 Score=57.35 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 457799999999999999999887644
No 236
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.0002 Score=57.15 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3577899999999999999998886543
No 237
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00027 Score=56.06 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
-+++|.|+.||||||+.+.|+-.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999887543
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.11 E-value=0.0002 Score=55.51 Aligned_cols=25 Identities=24% Similarity=0.058 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
++-+++|.|+.||||||+++.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999987
No 239
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.10 E-value=0.00024 Score=57.80 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..++|.|+||+||||+++.+++.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999999854
No 240
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.10 E-value=0.00021 Score=57.11 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|+.||||||+.+.|+..+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3577899999999999999999887553
No 241
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.09 E-value=0.00071 Score=52.24 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+.+.|+|.|.+||||||+++.|...+... ..+..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~ 64 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAML 64 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEe
Confidence 45689999999999999999999887544 4554443
No 242
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.09 E-value=0.00018 Score=62.04 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS 39 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~ 39 (227)
+..|++.||||+||||+++.|++.++...+.+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 45699999999999999999999987644433
No 243
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.09 E-value=0.00025 Score=53.67 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+|.|+|++||||||+++.|+.. +.++.++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yia 30 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIA 30 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEe
Confidence 3789999999999999998865 45666654
No 244
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.09 E-value=0.00089 Score=52.48 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=31.7
Q ss_pred CCce-EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 6 PRGA-FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 6 ~~~~-~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
.+++ .|++.|++|+||||++-.++..+...|.+|...
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 3454 499999999999999999999999999998653
No 245
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00021 Score=60.86 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
|+=|.+.||||+|||++++.++..++...+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 4558999999999999999999998764443
No 246
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.08 E-value=0.0003 Score=59.05 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.||+||||||+.+.|+-.+.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4577999999999999999999987543
No 247
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.07 E-value=0.00022 Score=59.87 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..|+|.||||+||||+++.|++.++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 456899999999999999999998854
No 248
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.07 E-value=0.00027 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 357789999999999999999887654
No 249
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.07 E-value=0.00031 Score=50.98 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ 40 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~ 40 (227)
+..|.|.|++|+|||++++.+++.....+.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 345899999999999999999987654444443
No 250
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.07 E-value=0.0004 Score=52.89 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=21.7
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
|..+......|+|.|.+||||||+++.|...
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 5444445567999999999999999988753
No 251
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.07 E-value=0.00017 Score=57.67 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
-++|.|++|+||||+++.+++.++...+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999988754433
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.07 E-value=0.00062 Score=57.03 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++.++.|.|++||||||++..++......+..+.++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 57799999999999999999999887777777766543
No 253
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.07 E-value=0.0013 Score=57.03 Aligned_cols=26 Identities=12% Similarity=-0.197 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..+++|+|.||+|+| +++.|.+.+..
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~ 247 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPD 247 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTT
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCC
Confidence 467889999999999 88888776543
No 254
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.06 E-value=0.00026 Score=58.51 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.-|+|.|+||+|||++++.+++.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 457999999999999999999998754
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.0003 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+++.++.|.|++||||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35779999999999999999999885
No 256
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.05 E-value=0.00086 Score=57.58 Aligned_cols=38 Identities=29% Similarity=0.292 Sum_probs=33.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+|.+|+|.|+.||||||++..|+..+...+.++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 47789999999999999999999999988888876553
No 257
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.05 E-value=0.00036 Score=58.63 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.||+||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 467799999999999999999998654
No 258
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.04 E-value=0.00037 Score=58.98 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.||+||||||+.+.|+-.+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4577999999999999999999987543
No 259
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.04 E-value=0.00039 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
.++|.|++|+||||+++.+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 499999999999999999999886543
No 260
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.04 E-value=0.00038 Score=51.56 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=21.4
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
|.........|+|.|.+||||||+++.|..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhc
Confidence 333333456799999999999999988864
No 261
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=97.04 E-value=0.0052 Score=50.82 Aligned_cols=80 Identities=13% Similarity=-0.068 Sum_probs=45.8
Q ss_pred hcccCCCCCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHH-HHHHHHH---hhC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874 137 FQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKV-AENYEKL---KDN-IWIDIDADKDIDTLGLIVKDIV 211 (227)
Q Consensus 137 ~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~-~~~~~~~---~~~-~~~~Id~~~s~~~v~~~I~~~i 211 (227)
.++....+.|-.|+.+-.+.+++.+|+..|+...+ +.++.. ..+-... ... .+++||. +.+++++++.++|
T Consensus 243 ~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~--~rl~~al~~ae~E~~~~~~~FDyvIVND--dLe~A~~~L~~iI 318 (337)
T 4dey_A 243 AQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQA--KHLNVQMVAADKLAQCPPELFDVILDEN--QLEDACEHLADYL 318 (337)
T ss_dssp GGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHH--TTHHHHHHHHHHHHHSCGGGCSEEECCS--SHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHH--HHHHHHHHHHHHHHhhCcccCCEEEECC--CHHHHHHHHHHHH
Confidence 33444445564455555568999999987654221 111111 1111111 111 5566544 6899999999999
Q ss_pred HHHhhhcCC
Q psy16874 212 IDTIKKSQF 220 (227)
Q Consensus 212 ~~~l~~~~~ 220 (227)
..++.....
T Consensus 319 ~~~~~~~h~ 327 (337)
T 4dey_A 319 EAYWKATHP 327 (337)
T ss_dssp HHHHHHHSC
T ss_pred HHHHhccCC
Confidence 998877554
No 262
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.04 E-value=0.00072 Score=56.77 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++.++.|.|+|||||||++..++......+.+|.++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56799999999999999999999888777778877553
No 263
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.03 E-value=0.0005 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
.+...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556799999999999999999875
No 264
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.03 E-value=0.00039 Score=58.52 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+++-+++|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 457799999999999999999998754
No 265
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.03 E-value=0.0004 Score=58.46 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|++||||||+++.|+-.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 467899999999999999998888644
No 266
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.02 E-value=0.00062 Score=51.32 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+...|+|.|.+||||||+++.|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44667999999999999999998764
No 267
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.02 E-value=0.00032 Score=57.25 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++|-+++|.|+.||||||+.+.|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999988654
No 268
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.01 E-value=0.00041 Score=58.59 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.++-+++|.|++||||||+.+.|+-.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467799999999999999999998654
No 269
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.00 E-value=0.00049 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+|+++|+|+||||||+.+..+....
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 6789999999999999987765443
No 270
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.0005 Score=57.42 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC---CCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN---NIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~---~~~~~~~ 42 (227)
..+..++|.|++|+||||+++.+++.+... +..+..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 346689999999999999999999988654 4444443
No 271
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.99 E-value=0.00036 Score=58.56 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.++-+++|.|++||||||+.+.|+-.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 357789999999999999999998654
No 272
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.99 E-value=0.00028 Score=58.04 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|++||||||+++.|...+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4678999999999999999998886543
No 273
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.00045 Score=57.16 Aligned_cols=25 Identities=24% Similarity=0.114 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++-|+|.||||+|||++++.+++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4678999999999999999999987
No 274
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00027 Score=61.08 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
.|+=|++.||||+|||++++.|+..++...+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 45668999999999999999999998764433
No 275
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.97 E-value=0.00039 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+..++|.|++||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 66899999999999999999998764
No 276
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.96 E-value=0.00054 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
..++|.|++||||||+.+.|.....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3589999999999999999998764
No 277
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.96 E-value=0.00042 Score=57.23 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++-.+++|+|+.||||||+.+.|....
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhc
Confidence 346789999999999999999998753
No 278
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.95 E-value=0.00031 Score=53.79 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
.++..|+|.|++||||||+.+.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4577899999999999999988764
No 279
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.95 E-value=0.00034 Score=58.54 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 467799999999999999999988644
No 280
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.95 E-value=0.00061 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|++|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 45699999999999999999875
No 281
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.94 E-value=0.00048 Score=57.60 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..++|.|+||+||||+++.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999874
No 282
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.94 E-value=0.00088 Score=56.12 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 43 (227)
+.++|.|++|+||||+++.+++.+... +..+..+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 389999999999999999999998765 45555544
No 283
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00045 Score=57.06 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+|..++|.|+||+|||++++.+.+.+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999999974
No 284
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.94 E-value=0.00065 Score=50.69 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
.+..-|+|.|.+||||||+++.|..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 3446799999999999999998875
No 285
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.93 E-value=0.00043 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+-+++|.|+.||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999987654
No 286
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.93 E-value=0.00043 Score=58.45 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.++-+++|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 357789999999999999999998654
No 287
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00042 Score=59.35 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP 38 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~ 38 (227)
.|+=|.+.||||+|||++++.++..++...+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 35569999999999999999999998764443
No 288
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.92 E-value=0.00078 Score=56.47 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+..++|.|++|+||||+++.+++.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999998854
No 289
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.92 E-value=0.00035 Score=58.90 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..|+|.|+||+||||+++.|++.++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999998853
No 290
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.91 E-value=0.0016 Score=50.60 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..|.+.+++|++||||||.+-.++..+...+.++..+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 46889999999999999955555677777788886654
No 291
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.91 E-value=0.00054 Score=55.30 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+++.++.|.|++||||||++..++..+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35779999999999999999999986653
No 292
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.91 E-value=0.0011 Score=55.48 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..+..++|.|++|+||||+++.+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34667999999999999999999998854
No 293
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.89 E-value=0.00056 Score=58.14 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.++-+++|.||+||||||+.+.|+..+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 457799999999999999999998643
No 294
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.89 E-value=0.0012 Score=54.37 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+++-+++|.|.||+||||++..++......+.++.++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45779999999999999999999988877776776655
No 295
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.89 E-value=0.00063 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
++..|+|.|.+||||||+.+.|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467799999999999999999875
No 296
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.89 E-value=0.00092 Score=49.02 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
++...|+|.|.+||||||+++.|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567799999999999999998864
No 297
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.88 E-value=0.00044 Score=58.20 Aligned_cols=28 Identities=36% Similarity=0.317 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
++.+++|.|++||||||+++.|...++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4678999999999999999999887654
No 298
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.86 E-value=0.00077 Score=51.40 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=22.5
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
|.........|+|.|.+||||||+.+.|..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhc
Confidence 543333456799999999999999998875
No 299
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.86 E-value=0.00076 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
..|+|.|++||||||+++.|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 300
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.85 E-value=0.00034 Score=58.66 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|++||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 457799999999999999999998654
No 301
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.85 E-value=0.0009 Score=51.84 Aligned_cols=28 Identities=36% Similarity=0.356 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+...|+|.|.+||||||++..|...+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4567999999999999999999987644
No 302
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.85 E-value=0.0004 Score=58.21 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.-|+|.|+||+||||+++.+++.++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345889999999999999999999864
No 303
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.85 E-value=0.00097 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.093 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999999875
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.83 E-value=0.00084 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|++||||||+.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456999999999999999998863
No 305
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.83 E-value=0.00079 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
....|+|.|.+||||||+++.|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998863
No 306
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.83 E-value=0.00073 Score=59.93 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
++..++|.||||+||||+++.|+..++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4678999999999999999999998854
No 307
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.00064 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|.+||||||+++.|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998753
No 308
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.82 E-value=0.00083 Score=53.61 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+..|+|.|++|+|||++++.+++.+...+.++..+.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 345889999999999999999998765555655543
No 309
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.81 E-value=0.001 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999988875
No 310
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.80 E-value=0.00087 Score=58.09 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.-++|.||||+||||+++.+++.++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 456899999999999999999999874
No 311
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.80 E-value=0.00071 Score=56.18 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=23.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
++|.||+|+||||+++.+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 8999999999999999999998654
No 312
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.79 E-value=0.0023 Score=50.22 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=33.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+.+.+++|++||||||.+-.++.++...+.++..+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999999999988999988766
No 313
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.79 E-value=0.00069 Score=50.38 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
++...|+|.|.+||||||+++.|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3456799999999999999988874
No 314
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.79 E-value=0.00052 Score=51.18 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=12.7
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
|..+......|+|.|.+||||||+++.|..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp --CCCSEEEEEEEECCCCC-----------
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHh
Confidence 544333456799999999999999998874
No 315
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.78 E-value=0.0011 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
++...|+|.|.+||||||+.+.|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567799999999999999988864
No 316
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.78 E-value=0.00077 Score=56.58 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
++.+++|.|++||||||+++.|...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 3568999999999999999988753
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.78 E-value=0.001 Score=48.57 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
....|+|.|.+||||||+++.|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 355699999999999999999876
No 318
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.78 E-value=0.0011 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
.+...|+|.|.+||||||+++.|..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 4456799999999999999999874
No 319
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.77 E-value=0.00073 Score=57.99 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.0
Q ss_pred CCceE--EEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAF--IVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~--I~i~G~~GsGKST~~~~L~~~ 31 (227)
++|-+ ++|.|++||||||+++.|...
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45667 999999999999999999764
No 320
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.77 E-value=0.00072 Score=56.59 Aligned_cols=27 Identities=30% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+++.++.|.|++||||||++..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999875
No 321
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.77 E-value=0.00087 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
.++.+|+|.|.+||||||+.+.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 4566899999999999999999875
No 322
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.77 E-value=0.0009 Score=49.58 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+..-|+|.|.+|+||||+++.+..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999998876
No 323
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.75 E-value=0.00061 Score=56.34 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..++|.|++|+||||+++.+++.++.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999988654
No 324
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.75 E-value=0.0023 Score=52.22 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=33.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++++|+|.|..|+||||++-.|+..|...|.+|..++.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 77 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 46788888999999999999999999999999876553
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.74 E-value=0.00097 Score=49.23 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999875
No 326
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.74 E-value=0.0011 Score=47.99 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|++.|.+||||||+++.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998753
No 327
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.74 E-value=0.00083 Score=56.30 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+.-|+|.|++|+||||+++.+++.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~ 143 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA 143 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3567999999999999999999998743
No 328
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.74 E-value=0.0011 Score=49.25 Aligned_cols=25 Identities=24% Similarity=0.048 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
++...|+|.|.+|+||||+++.+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4456799999999999999988875
No 329
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.00068 Score=58.87 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|.+++|.|+.||||||+++.|+..+.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 4578899999999999999999998654
No 330
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.74 E-value=0.0011 Score=47.98 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+.|++.|.+||||||+++.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998753
No 331
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0011 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999988876
No 332
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.00097 Score=55.21 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=22.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
++|.|++|+||||+++.+++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998763
No 333
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.73 E-value=0.0012 Score=47.97 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46699999999999999998875
No 334
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.73 E-value=0.0017 Score=54.69 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++.++.|.|+|||||||++..++......+.+|.++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 46789999999999999999999888777778877654
No 335
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.73 E-value=0.0012 Score=49.70 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35699999999999999998875
No 336
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.73 E-value=0.00091 Score=54.83 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+.+++|.|++||||||+++.|. .+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 36789999999999999999998 43
No 337
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.71 E-value=0.0014 Score=48.70 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|.+||||||+++.|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999998853
No 338
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.71 E-value=0.0012 Score=56.96 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~ 43 (227)
+..++|.|++|+||||+++.++..+... +.++..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4568999999999999999999988654 55555543
No 339
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.001 Score=55.25 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l 32 (227)
++|.|++|+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999966
No 340
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.70 E-value=0.0011 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|.+||||||+++.|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999853
No 341
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.69 E-value=0.001 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+.+|.|+.||||||+++.|.-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999988764
No 342
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.69 E-value=0.002 Score=57.56 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=31.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
..+++|.|+||+||||++..|...+...+.++....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 457899999999999999999999988888876543
No 343
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.0012 Score=48.20 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999988875
No 344
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.0013 Score=49.64 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+..-|+|.|.+||||||+++.|..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 356799999999999999998876
No 345
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.67 E-value=0.0012 Score=50.13 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 455799999999999999999886
No 346
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.67 E-value=0.0011 Score=56.76 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+.+++|.|++||||||+.+.|...+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998743
No 347
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.65 E-value=0.0015 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999876
No 348
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.65 E-value=0.0013 Score=48.07 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...-|+|.|.+||||||+++.|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 345699999999999999988875
No 349
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.001 Score=58.53 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+..++|.|++|+||||+++.+++.++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999884
No 350
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.65 E-value=0.0026 Score=55.04 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~~ 44 (227)
+++-+++|.|+||+||||++..++..+.. .|.+|.++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45779999999999999999999998865 5778877653
No 351
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.65 E-value=0.00059 Score=56.67 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+.+++|.|++||||||+++.|...+..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3568999999999999999999987654
No 352
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.64 E-value=0.0015 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+..-|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 345699999999999999998874
No 353
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.63 E-value=0.0014 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+...|+|.|++||||||+++.|...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998864
No 354
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.63 E-value=0.0036 Score=47.85 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.+.+.++.|++||||||.+-.....+...+..+..+.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 3779999999999999777777777778888887765
No 355
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.0016 Score=53.16 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.++|.|++|+||||+++.+++.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4899999999999999999998754
No 356
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.63 E-value=0.0013 Score=54.90 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+..++|.|++|+||||+++.+++.+...
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999988653
No 357
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.0021 Score=50.34 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH-HhCCCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l-~~~~~~~~~~~ 43 (227)
++.++.|.|+||+||||+|-.++.+. ...+.++.++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 46799999999999999998877543 33466676644
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.62 E-value=0.0013 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..|+|.|.+||||||+++.|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999998874
No 359
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.62 E-value=0.0015 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+.-|+|.|++|+||||++-.|.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56799999999999999988877
No 360
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.62 E-value=0.0014 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+..-|+|.|.+||||||+++.|..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999875
No 361
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.61 E-value=0.0014 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+.+.|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999999875
No 362
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0014 Score=49.49 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+...|+|.|.+||||||+++.|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456999999999999999998753
No 363
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.001 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLV 29 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~ 29 (227)
++...|+|.|.+||||||+.+.|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356779999999999999997775
No 364
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.58 E-value=0.0013 Score=53.91 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+++.+|+|+|.+||||||+.+.|..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4456899999999999999998864
No 365
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.58 E-value=0.0011 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999875
No 366
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.58 E-value=0.0012 Score=53.97 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+.+++|.|++||||||+.+.|...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 568999999999999999888753
No 367
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.58 E-value=0.0014 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
..-|+|.|.+||||||+++.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999998753
No 368
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.57 E-value=0.0019 Score=49.35 Aligned_cols=25 Identities=20% Similarity=-0.009 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
++...|+|.|.+|+||||+++.|..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4456799999999999999988875
No 369
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.57 E-value=0.0028 Score=52.80 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
.++-+++|.|.||+||||++..++......+.+|.++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 356799999999999999999999988878888877653
No 370
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.57 E-value=0.0017 Score=47.78 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|.+||||||+++.|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999998763
No 371
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.56 E-value=0.0016 Score=48.63 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
.+...|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999988864
No 372
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.56 E-value=0.0012 Score=57.59 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.-|+|.||||+||||+++.++..++.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34889999999999999999998754
No 373
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.56 E-value=0.0017 Score=47.42 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45699999999999999998874
No 374
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.55 E-value=0.0014 Score=57.99 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+.+|-+++|.|+.||||||+++.|+-.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3467899999999999999999998644
No 375
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.54 E-value=0.0016 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 345799999999999999998875
No 376
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.54 E-value=0.0014 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++.++.|.|+||+||||++..++...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~ 147 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL 147 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC
Confidence 35678999999999999999998873
No 377
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.54 E-value=0.0013 Score=49.26 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999876
No 378
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.53 E-value=0.0016 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34599999999999999998875
No 379
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.53 E-value=0.0019 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45699999999999999998876
No 380
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.52 E-value=0.0014 Score=57.37 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|.|+||+||||+++.|+..++
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998765
No 381
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.52 E-value=0.0021 Score=55.85 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
...++|.|+||+||||+++.|++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999865
No 382
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.52 E-value=0.0021 Score=48.66 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 35699999999999999998875
No 383
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.51 E-value=0.001 Score=54.43 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+..++|.|++|+||||+++.+++.++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999885
No 384
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.50 E-value=0.0016 Score=56.41 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..++|.|+||+||||+++.|++.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45899999999999999999998754
No 385
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.49 E-value=0.00094 Score=56.55 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.-|+|.|++|+|||++++.+++.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 467999999999999999999988654
No 386
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.49 E-value=0.0019 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 34699999999999999988875
No 387
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0023 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...-|+|.|.+||||||+.+.|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 356799999999999999999876
No 388
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.49 E-value=0.0021 Score=47.76 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 45699999999999999998875
No 389
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.49 E-value=0.0019 Score=53.39 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC------CCCeEEee
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN------NIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~------~~~~~~~~ 43 (227)
.+.++.|.|+|||||||++..++...... +..+.++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 46799999999999999999998865332 44565555
No 390
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.49 E-value=0.0015 Score=56.49 Aligned_cols=25 Identities=24% Similarity=0.114 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
+.-|+|.||||+||||+++.++..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999986
No 391
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.48 E-value=0.0019 Score=48.33 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|.+||||||+++.|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999888653
No 392
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.48 E-value=0.0024 Score=50.10 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
.|+|.|..|+||||++..|+..+...|.+|..++.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 36 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDG 36 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 37779999999999999999999999999876553
No 393
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.47 E-value=0.0019 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.+.|+|.|++||||||+.+.|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999753
No 394
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.47 E-value=0.0015 Score=58.32 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
++|.+++|.|++||||||+++.|...+..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46779999999999999999999886653
No 395
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.47 E-value=0.0029 Score=52.70 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=29.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh------CCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK------NNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~------~~~~~~~~~ 43 (227)
+++.++.|.|++||||||++..++...-. .+-.+.++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 46789999999999999999999886322 344555554
No 396
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.002 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
..|+|.|.+|+||||+++.|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 397
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.47 E-value=0.00058 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
++.+++|.|++||||||+++.|...+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 46789999999999999999887543
No 398
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.47 E-value=0.0012 Score=58.15 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+..|+|+|++||||||+++.|...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 466799999999999999999987664
No 399
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.46 E-value=0.0017 Score=47.51 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLV 29 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~ 29 (227)
.-|+|.|.+||||||+++.|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999886
No 400
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.45 E-value=0.0023 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999998875
No 401
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.45 E-value=0.002 Score=54.76 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+++..|.|.|++||||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999987
No 402
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.45 E-value=0.0019 Score=57.17 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+++.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999998644
No 403
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.45 E-value=0.001 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..+.|.|+||+|||++++.+++.++.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35889999999999999999998754
No 404
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.44 E-value=0.0016 Score=58.17 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|.+++|.|++||||||+++.|...+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 4677999999999999999999887553
No 405
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.44 E-value=0.0019 Score=47.13 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLV 29 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~ 29 (227)
.-|+|.|.+||||||+++.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 358999999999999998885
No 406
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.43 E-value=0.002 Score=51.15 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+.+.|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999998874
No 407
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.43 E-value=0.0021 Score=47.93 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999988875
No 408
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.43 E-value=0.002 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+.+.|..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998875
No 409
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.43 E-value=0.0022 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999988875
No 410
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0023 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45699999999999999998875
No 411
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.42 E-value=0.0034 Score=54.25 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=32.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++-+++|.|.||+||||++-.++......+.+|.++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 35779999999999999999999998877788887765
No 412
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.42 E-value=0.0029 Score=47.43 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999988765
No 413
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0021 Score=57.77 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+.+.|+-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 467899999999999999999998654
No 414
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.41 E-value=0.0019 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.++|.|++|+||||+++.+++.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcC
Confidence 3899999999999999999998743
No 415
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.41 E-value=0.0023 Score=47.79 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
....|+|.|.+||||||+++.|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999998763
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.41 E-value=0.0024 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 345799999999999999998875
No 417
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.41 E-value=0.0045 Score=53.39 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEee
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVN 43 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~ 43 (227)
+++-+++|.|+||+||||++-.++..... .+.+|.++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45779999999999999999999998875 477887765
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.40 E-value=0.0032 Score=45.94 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+.+.+|.|+.||||||+.+.|.-.+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 45789999999999999999887663
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.40 E-value=0.0023 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999875
No 420
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.0024 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999988874
No 421
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.39 E-value=0.0026 Score=47.81 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|.+||||||+++.|...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456999999999999999888753
No 422
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.39 E-value=0.0022 Score=52.52 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
|+.. .+...|+|.|.||+||||+.+.|..
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhC
Confidence 5554 3445799999999999999999874
No 423
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.39 E-value=0.0051 Score=48.95 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++|+|.|..|+||||++-.|+..+...|.+|..++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~ 37 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGC 37 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcC
Confidence 467788999999999999999999988999876543
No 424
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.38 E-value=0.0019 Score=52.98 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+.++.+.|++|+||||+++.+++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 356788899999999999999999874
No 425
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.38 E-value=0.0016 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
++.++.|.|++||||||++..|+-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4678999999999999999977643
No 426
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.0022 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 11 IVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 11 I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
++|.|++|+||||+++.+++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998754
No 427
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.35 E-value=0.0044 Score=53.65 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNI 37 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~ 37 (227)
.++|.|++||||||++..+...+...+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999988776
No 428
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.35 E-value=0.0009 Score=48.41 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.-|.|.|++|+|||++++.+++...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3488999999999999988887543
No 429
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.35 E-value=0.0041 Score=52.58 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
...++|.|++||||||+++.|...+...+..+..++
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 446889999999999999999998877787776665
No 430
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.34 E-value=0.0024 Score=48.87 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+...|+|.|.+||||||+++.|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999988763
No 431
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.33 E-value=0.0045 Score=54.59 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
.++-++.|.|++||||||++..++..+...|-++..+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3567899999999999999999998877666666443
No 432
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.33 E-value=0.0026 Score=46.24 Aligned_cols=22 Identities=41% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~ 31 (227)
-|+|.|.+|+||||+++.|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998753
No 433
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.33 E-value=0.0067 Score=49.53 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCceEEEEEcC-CCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVFEGC-DRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
..+++|+|+|+ +|+||||++..|+..+...|.+|..++.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~ 141 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDA 141 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34678888886 7999999999999999999999877653
No 434
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.33 E-value=0.001 Score=61.47 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
.|+=|++.||||+|||++++.++..++..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45679999999999999999999887653
No 435
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.33 E-value=0.0061 Score=49.21 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
++|+|.|..|+||||++-.|+..|...|.+|..++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56888999999999999999999998899986654
No 436
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.31 E-value=0.0064 Score=50.04 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
..++|+|.|--|+||||.+-.|+..|...|.+|..++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~ 84 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGC 84 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 56799999999999999999999999999999977553
No 437
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.30 E-value=0.0027 Score=47.80 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
....|+|.|.+||||||+++.|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999988764
No 438
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.29 E-value=0.0018 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..|+|.||||+|||+++..|+..+..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 46999999999999999999996543
No 439
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.29 E-value=0.0032 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 34699999999999999998875
No 440
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.28 E-value=0.003 Score=47.69 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLV 29 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~ 29 (227)
+...|+|.|.+||||||+++.|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999998875
No 441
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.28 E-value=0.0029 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.106 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|.+|+||||+++.|...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999988763
No 442
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.26 E-value=0.0023 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLV 29 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~ 29 (227)
...|+|.|.+||||||+++.|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999998874
No 443
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.26 E-value=0.001 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.++|.|++|+|||++++.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 489999999999999999999875
No 444
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.26 E-value=0.0033 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..|+|.|.+||||||+++.|..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999998875
No 445
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.26 E-value=0.0024 Score=48.49 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|++.|.+||||||+.+.|..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999988863
No 446
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.26 E-value=0.0022 Score=47.86 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~ 30 (227)
.|+|.|.+||||||+++.|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999998875
No 447
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.25 E-value=0.0031 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 345799999999999999999874
No 448
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.25 E-value=0.0029 Score=54.61 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
..+|-++.|.|++||||||+++.|+....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35678899999999999999999998754
No 449
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.25 E-value=0.0018 Score=58.08 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|.+++|.|++||||||+++.|...+.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4677999999999999999999887543
No 450
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.24 E-value=0.0018 Score=60.05 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
..+..|+|.|++||||||+++.|+..++.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 44667999999999999999999987653
No 451
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.23 E-value=0.0041 Score=49.38 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=32.5
Q ss_pred CCCCCCCceEEEEE-cCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 1 MASQIPRGAFIVFE-GCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 1 m~~~~~~~~~I~i~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
|.. +++++|+|. +..|+||||++-.|+..+...|.+|..++.
T Consensus 1 m~~--~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 43 (257)
T 1wcv_1 1 MLR--AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDL 43 (257)
T ss_dssp ------CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCC--CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 444 456778776 677999999999999999988999977663
No 452
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.22 E-value=0.0034 Score=48.73 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999988865
No 453
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.22 E-value=0.002 Score=57.85 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|++||||||+++.|...+.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 5678999999999999999998876543
No 454
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.22 E-value=0.0026 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999988875
No 455
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.22 E-value=0.0017 Score=60.26 Aligned_cols=20 Identities=50% Similarity=0.868 Sum_probs=18.5
Q ss_pred CCceEEEEEcCCCCcHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQA 25 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~ 25 (227)
|+..+++|+|++|||||||+
T Consensus 34 P~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 34 PRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp ESSSEEEEESSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56789999999999999998
No 456
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.22 E-value=0.0031 Score=49.92 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 356799999999999999998864
No 457
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0035 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999998874
No 458
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.20 E-value=0.0015 Score=58.26 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|++||||||+++.|...+.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4678999999999999999988776543
No 459
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.20 E-value=0.0028 Score=55.87 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHH--HHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKK--LVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~--L~~~l~ 33 (227)
+++-+++|.|++||||||+++. +.-.+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4577999999999999999999 444444
No 460
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.19 E-value=0.0034 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
-+++|.|+.||||||+++.|+-.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 68999999999999999999987654
No 461
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.18 E-value=0.0027 Score=57.00 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYL 32 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l 32 (227)
.+|-+++|.|+.||||||+.+.|+-.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 567899999999999999999998644
No 462
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.18 E-value=0.0031 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 456799999999999999999975
No 463
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.17 E-value=0.0096 Score=47.86 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=32.8
Q ss_pred CCceEEEEEcC-CCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVFEGC-DRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
..+++|+|+|+ +|+||||++..|+..+...|.+|..++.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~ 119 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDG 119 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 34678888876 8999999999999999999999877553
No 464
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.17 E-value=0.0036 Score=47.73 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 356799999999999999988875
No 465
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=96.17 E-value=0.0084 Score=46.96 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=32.8
Q ss_pred CceEEEEEcC-CCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 7 RGAFIVFEGC-DRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 7 ~~~~I~i~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+.+.|.|+|. +|+||||++-.|.+.+...|+++..++
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 3456889998 899999999999999999999998865
No 466
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.16 E-value=0.0066 Score=55.88 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 42 (227)
.++|.|++|+|||++++.|++.+...+.++..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 699999999999999999999986555555443
No 467
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.16 E-value=0.0032 Score=53.16 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.9
Q ss_pred CceEEEE--EcCCCCcHHHHHHHHHHHHHh
Q psy16874 7 RGAFIVF--EGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 7 ~~~~I~i--~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+..++| .|++|+||||+++.+.+.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 4556777 999999999999999998764
No 468
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.15 E-value=0.0034 Score=47.66 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45699999999999999999874
No 469
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.15 E-value=0.0037 Score=47.25 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
+...|+|.|.+||||||+++.|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999998874
No 470
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.15 E-value=0.0036 Score=52.31 Aligned_cols=28 Identities=18% Similarity=0.041 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-.+.|.|+.||||||+.+.|+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4677899999999999999999998754
No 471
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.14 E-value=0.0043 Score=57.14 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+..++|.|+||+||||+++.|++.+..
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 446899999999999999999999854
No 472
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.14 E-value=0.0026 Score=56.28 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+..+.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3577899999999999999999987554
No 473
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.0031 Score=48.17 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 45699999999999999998875
No 474
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.13 E-value=0.0019 Score=59.88 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS 39 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~ 39 (227)
.+..++|.||||+||||+++.|+..++...+.+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 455689999999999999999999987654443
No 475
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.13 E-value=0.0038 Score=47.41 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999988876
No 476
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.12 E-value=0.003 Score=51.69 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF 41 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 41 (227)
+..|+|.|++|+|||++++.+.+.....+.+...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~ 58 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVT 58 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEE
Confidence 4458899999999999999999976544444433
No 477
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0042 Score=46.64 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
.-|+|.|.+||||||+++.|...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46999999999999999998864
No 478
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.11 E-value=0.0038 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~ 30 (227)
.-|+|.|.+||||||+++.|..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999999874
No 479
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.11 E-value=0.0085 Score=45.43 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=30.5
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 9 AFIVFE-GCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 9 ~~I~i~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
++|+|. +..|+||||++-.|+..+...|.+|..++.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 456666 678899999999999999999999987763
No 480
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0041 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
...|+|.|.+||||||+++.|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999988763
No 481
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.10 E-value=0.0036 Score=46.84 Aligned_cols=25 Identities=36% Similarity=0.305 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.-|+|.|.+||||||+++.|...+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4699999999999999988876544
No 482
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.10 E-value=0.003 Score=47.36 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+...|+|.|.+||||||+++.|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999888754
No 483
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.10 E-value=0.0086 Score=46.18 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=29.5
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGC-DRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
+.|+|+|. .|+||||++-.|+..+...|.+|..++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 35666664 799999999999999999999987764
No 484
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.10 E-value=0.0039 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45699999999999999999975
No 485
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.10 E-value=0.0022 Score=57.36 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
++|-+++|.|++||||||+++.|...+.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4577999999999999999988876543
No 486
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.09 E-value=0.0046 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 10 FIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 10 ~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+.+|+|+.||||||+.+.|.-.+-
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 788999999999999999986654
No 487
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.09 E-value=0.0057 Score=56.27 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNN 36 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~ 36 (227)
.+..++|.|+||+||||+++.|++.+....
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~ 235 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 455689999999999999999999986543
No 488
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.09 E-value=0.0041 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
..-|+|.|.+||||||+++.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999988865
No 489
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.09 E-value=0.0073 Score=48.07 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCceEEEE-EcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874 6 PRGAFIVF-EGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i-~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~ 44 (227)
+++++|+| .|..|+||||++-.|+..+. .|.+|..++.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~ 63 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDM 63 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEEC
Confidence 34666666 67788999999999999999 8999977653
No 490
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.09 E-value=0.0034 Score=55.54 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
+|-+++|.|+.||||||+++.|+..+.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 577899999999999999999987654
No 491
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.09 E-value=0.0051 Score=50.93 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN 35 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~ 35 (227)
+..+.|.|++|+||||++..+++.+...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4579999999999999999999998753
No 492
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.08 E-value=0.0021 Score=56.28 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+.-++|.|+||+|||++++.++..++
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 355689999999999999999998764
No 493
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.06 E-value=0.0039 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDY 31 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~ 31 (227)
+++.++.|.|+|||||||++..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999875
No 494
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.06 E-value=0.0061 Score=46.81 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
+.+.+|.|+.||||||+.+.|.-.+..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999877764
No 495
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.05 E-value=0.003 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q psy16874 7 RGAFIVFEGCDRSGKTTQAKKLV 29 (227)
Q Consensus 7 ~~~~I~i~G~~GsGKST~~~~L~ 29 (227)
+...|+|.|.+||||||+.+.|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999998774
No 496
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.04 E-value=0.0061 Score=50.25 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEeeC
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVNF 44 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~~ 44 (227)
+++ ++.|.|+|||||||++-.++...... +-.+.++..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 346 79999999999999988887766543 555666553
No 497
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.04 E-value=0.0037 Score=56.14 Aligned_cols=28 Identities=32% Similarity=0.317 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33 (227)
Q Consensus 6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~ 33 (227)
.+|-+++|.|+.||||||+++.|+-.+.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3577899999999999999999987554
No 498
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.04 E-value=0.0046 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874 8 GAFIVFEGCDRSGKTTQAKKLVD 30 (227)
Q Consensus 8 ~~~I~i~G~~GsGKST~~~~L~~ 30 (227)
...|+|.|.+||||||+++.|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 35699999999999999998864
No 499
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.03 E-value=0.011 Score=48.79 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 43 (227)
.++++.|..|+||||++..|+..+...|.+|..+.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 57899999999999999999999999999987655
No 500
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.00 E-value=0.0044 Score=50.98 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874 9 AFIVFEGCDRSGKTTQAKKLVDYLNK 34 (227)
Q Consensus 9 ~~I~i~G~~GsGKST~~~~L~~~l~~ 34 (227)
.+++|.|++|+||||+++.+.+.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47999999999999999999988753
Done!