RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16874
(227 letters)
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 200 bits (511), Expect = 3e-65
Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 22/227 (9%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
MA++ RGA IV EG DR+GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+
Sbjct: 4 MAAR--RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQ 61
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
KK ++ D + HLLFSANRWE+ P + + + QG+TL ++ DRY+FS
Sbjct: 62 KKSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTL-VV----------------DRYAFS 104
Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
GVAF+ AKE + WC QP+ GLPKPD VL +L +R FG ERYE FQ +
Sbjct: 105 GVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERAL 164
Query: 181 ENYEKLKD---NIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE 224
+ +L W +DA K I+ + ++ + D I + PL
Sbjct: 165 RCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLG 211
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 195 bits (499), Expect = 1e-63
Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 22/228 (9%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
M +G FIVFEG DRSGK+TQ+K LV+YL NN+ + + FP+R G II +YL+
Sbjct: 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK 62
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
+ + ++ HLLFSANRWE + L+ +GI + + DRY++S
Sbjct: 63 MENSMSNETIHLLFSANRWEHMNEIKSLLLKGIWV-VC----------------DRYAYS 105
Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
GVA+S+ ++ +WC P++GL KPD V + Q R +G+E YE+ + Q+K+
Sbjct: 106 GVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIY 165
Query: 181 ENYEKL-KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLESNK 227
E Y+ ++ WI+IDA + I+ + + ++ + K + P E N
Sbjct: 166 ETYKHFAHEDYWINIDATRKIED----IHNDIVKEVTKIKVEPEEFNF 209
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 194 bits (495), Expect = 3e-63
Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 25/213 (11%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IVFEG D+SGKTTQ +++ + N I ++NFP R+ TG +ID+YL +K
Sbjct: 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIK--YLNFPQRSTVTGKMIDDYLTRKKTYN 60
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D +LLF ANRWE + + +EQGITL I+ DRY+FSGVA++A
Sbjct: 61 DHIVNLLFCANRWEFASFIQEQLEQGITL-IV----------------DRYAFSGVAYAA 103
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AK G ++ E GLPKPD V+ + + + R G+E YE FQ+KV + Y+K+
Sbjct: 104 AK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYKKM 160
Query: 187 ---KDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216
D W I ++ + D ++K+IVI+ I
Sbjct: 161 IEEGDIHWQIISSEFEEDVKKELIKNIVIEAIH 193
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 173 bits (441), Expect = 1e-54
Identities = 83/223 (37%), Positives = 111/223 (49%), Gaps = 36/223 (16%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR-KKIEL 65
RG I+ EG DR+GKTTQ L L N + FP+R+ G +I+EYL +L
Sbjct: 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK---LLKFPERSTRIGGLINEYLTDDSFQL 60
Query: 66 PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
DQA HLLFSANRWE + K + +G + +M DRY +SGVA+S
Sbjct: 61 SDQAIHLLFSANRWEIVDKIKKDLLEGKNI-VM----------------DRYVYSGVAYS 103
Query: 126 AAKE--GMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDERYEQTDFQRKVAEN 182
AAK GMD+ WC QP+ GL KPD L + + GFGDERYE FQ KV +
Sbjct: 104 AAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQT 163
Query: 183 YEKL-------KDNIWIDIDA-DKDIDTLGLIVKDIVIDTIKK 217
+ KL D +D +K I V+ ++ ++
Sbjct: 164 FMKLLDKEIRKGDESITIVDVTNKGIQE----VEALIWQIVEP 202
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 156 bits (396), Expect = 4e-48
Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 42/228 (18%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTG-HIIDEYLRKK---IEL 65
I EG D +GK T +KL + FP S I E L + +
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61
Query: 66 PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
A LF+ +R T+ L + I+ DRY S A+S
Sbjct: 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVV-IL----------------DRYVASNAAYS 104
Query: 126 AAK-----EGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRK-------GFGDER 169
AA+ G +W + E GLPKPD +L ++ E A +R + G +
Sbjct: 105 AARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDN 164
Query: 170 YEQ-TDFQRKVAENYEKLKD----NIWIDIDADKDIDTLGLIVKDIVI 212
YE+ + Q++ Y +L W+ + AD D L + +
Sbjct: 165 YERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPPDV 212
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 113 bits (285), Expect = 2e-31
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 46/234 (19%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
+G I FEG D SGK++QA L D++ ++ + + II E +K L
Sbjct: 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV--YLTEWNSSDWIHDIIKEAKKKD-LLT 59
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTNDRYSFSGV 122
L+ + + +R + I L G DRY ++
Sbjct: 60 PLTFSLIHATDFSDR---YERYI---------------LPMLKSGFIVIS--DRYIYTAY 99
Query: 123 AFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKG--------------FGD 167
A + + G+DI W + KPD +++ + AL+R K F
Sbjct: 100 ARDSVR-GVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPG 158
Query: 168 ERYEQT--DFQRKVAENYEKL-KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS 218
E+ +Q + E Y+KL KD +I ID K + + ++ V + I S
Sbjct: 159 LSPEEGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGELIDNS 212
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 92.6 bits (231), Expect = 1e-23
Identities = 54/227 (23%), Positives = 85/227 (37%), Gaps = 56/227 (24%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRKKI-- 63
FI FEG D SGK+TQ + L YL K I G E +RK +
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKK---------VILKREPGGTETGEKIRKILLE 52
Query: 64 -ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTNDRYS 118
E+ +A LF A+R L I ++ L +G DRY+
Sbjct: 53 EEVTPKAELFLFLASRNL----LVTEI---------------KQYLSEGYAVLL--DRYT 91
Query: 119 FSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFGDERYEQTD 174
S VA+ + + PD ++ E AL+R+ R+E+ +
Sbjct: 92 DSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEKRE 149
Query: 175 FQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
F +V E Y L + I + +D + I+ + V+ +K+
Sbjct: 150 FLERVREGYLVLAREHPERIVV-LDGKRSIEE----IHRDVVREVKR 191
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 92.2 bits (230), Expect = 2e-23
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 50/225 (22%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRKKI-- 63
I FEG D SGKTTQAKKL +YL + G + E LR+ +
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYF---------VSLYREPGGTKVGEVLREILLT 52
Query: 64 -ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTNDRYS 118
EL ++ LLF A+R + LIE+ I +L + DR+
Sbjct: 53 EELDERTELLLFEASRSK-------LIEEKI-----------IPDLKRDKVVIL--DRFV 92
Query: 119 FSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFGDERYEQTD 174
S +A+ +G+D+ + + KPD LL + + AL+R K R+E +
Sbjct: 93 LSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLK--EKNRFENKE 150
Query: 175 FQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216
F KV + + +L ++N+ + IDA + + + + + ++
Sbjct: 151 FLEKVRKGFLELAKEEENVVV-IDASGEEEEVFKEILRALSGVLR 194
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 91.9 bits (229), Expect = 3e-23
Identities = 53/238 (22%), Positives = 85/238 (35%), Gaps = 56/238 (23%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRKK 62
R +IV EG + +GKTT +V+ L + I + T G + E LR
Sbjct: 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRD--------MVFTREPGGTQLAEKLRSL 53
Query: 63 IELPDQAAH---------LLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG-- 111
+ L+F A R + L+E I + L G
Sbjct: 54 LLDIKSVGDEVITDKAEVLMFYAARVQ-------LVETVI-----------KPALANGTW 95
Query: 112 --CTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGF 165
DR+ S A+ G+D G +PD L + E L+R +
Sbjct: 96 VIG--DRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR 153
Query: 166 GDE-RYEQ--TDFQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
G+ R EQ DF + Y +L +I IDA + ++ + ++ V +K+
Sbjct: 154 GELDRIEQESFDFFNRTRARYLELAAQDKSIHT-IDATQPLEAVMDAIRTTVTHWVKE 210
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 91.9 bits (229), Expect = 6e-23
Identities = 56/242 (23%), Positives = 94/242 (38%), Gaps = 54/242 (22%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIID 56
S FIV EG + +GK+T + +V+ L +N I T G ++
Sbjct: 20 FQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDH--------ITRTREPGGTLLA 71
Query: 57 EYLRK-------KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLD 109
E LR EL D LL A R + L+E I + L
Sbjct: 72 EKLRALVKEEHPGEELQDITELLLVYAARVQ-------LVENVI-----------KPALA 113
Query: 110 QG----CTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQR 161
+G DR+ S A+ + S ++ G KPD L ++ + L+R
Sbjct: 114 RGEWVVG--DRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLER 171
Query: 162 RKGFGDE-RYEQ--TDFQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
+G G+ R E+ F + E Y +L D++ + IDA + I+ + ++ + D +
Sbjct: 172 ARGRGELDRIEKMDISFFERARERYLELANSDDSVVM-IDAAQSIEQVTADIRRALQDWL 230
Query: 216 KK 217
+
Sbjct: 231 SQ 232
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 89.9 bits (224), Expect = 2e-22
Identities = 45/236 (19%), Positives = 80/236 (33%), Gaps = 55/236 (23%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLR-- 60
G F+ EG + +GK+T L + L + I T G + E +R
Sbjct: 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIE---------VQLTREPGGTPLAERIREL 55
Query: 61 ----KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----C 112
+ LL A R + + I L +G C
Sbjct: 56 LLAPSDEPMAADTELLLMFAARAQ-------HLAGVI-----------RPALARGAVVLC 97
Query: 113 TNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFGDE 168
DR++ + A+ G+ + E G +PD L+F L E L R G
Sbjct: 98 --DRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL 155
Query: 169 -RYEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
R+EQ F V + Y + + + +DA + + + ++ + +++
Sbjct: 156 DRFEQEDRRFFEAVRQTYLQRAAQAPERYQV-LDAGLPLAEVQAGLDRLLPNLLER 210
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 88.1 bits (219), Expect = 1e-21
Identities = 48/232 (20%), Positives = 83/232 (35%), Gaps = 48/232 (20%)
Query: 2 ASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDE 57
+ RG FI FEG D +GKTT + D L + P+ + T G + E
Sbjct: 19 PGSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGR-----HVVVTREPGGTRLGE 73
Query: 58 YLRKKI---ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG--- 111
LR+ + + + LL A R E + I E L +G
Sbjct: 74 TLREILLNQPMDLETEALLMFAGRRE-------HLALVI-----------EPALARGDWV 115
Query: 112 -CTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFG 166
DR++ + A+ G+ E+ G +PD +LF + + A RR
Sbjct: 116 VS--DRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173
Query: 167 DE-RYEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIV 211
++E F + Y + I +D+ + I + ++ ++
Sbjct: 174 MPDKFESESDAFFARTRAEYLRRAQEAPHRFVI-VDSSEPIAQIRKQLEGVL 224
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 86.2 bits (214), Expect = 8e-21
Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 55/235 (23%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRK- 61
AFI FEG + SGKTT ++ L K+ I T G E +RK
Sbjct: 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDY----------DVIMTREPGGVPTGEEIRKI 74
Query: 62 ---KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTN 114
++ + +LF+A+R E + + L +G C
Sbjct: 75 VLEGNDMDIRTEAMLFAASRRE-------HLVLKV-----------IPALKEGKVVLC-- 114
Query: 115 DRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKL-NEEALQRRKGFGDE-- 168
DRY S +A+ G+ + + PD + + E +R +
Sbjct: 115 DRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN 174
Query: 169 RYEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
R +Q F KV E Y+++ ++AD+ ++ + +I ++K
Sbjct: 175 RLDQEDLKFHEKVIEGYQEIIHNESQRFKS-VNADQPLENVVEDTYQTIIKYLEK 228
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 84.6 bits (210), Expect = 2e-20
Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 55/234 (23%)
Query: 8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRK-- 61
AFI FEG + SGKTT ++ L K+ I T G E +RK
Sbjct: 2 SAFITFEGPEGSGKTTVINEVYHRLVKDY----------DVIMTREPGGVPTGEEIRKIV 51
Query: 62 --KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTND 115
++ + +LF+A+R E + + L +G C D
Sbjct: 52 LEGNDMDIRTEAMLFAASRRE-------HLVLKV-----------IPALKEGKVVLC--D 91
Query: 116 RYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKL-NEEALQRRKGFGDE--R 169
RY S +A+ G+ + + PD + + E +R + R
Sbjct: 92 RYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR 151
Query: 170 YEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
+Q F KV E Y+++ ++AD+ ++ + +I ++K
Sbjct: 152 LDQEDLKFHEKVIEGYQEIIHNESQRFKS-VNADQPLENVVEDTYQTIIKYLEK 204
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 83.5 bits (207), Expect = 7e-20
Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 53/237 (22%)
Query: 2 ASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDE 57
+Q P FI FEG D SGKTTQ+ L +YL++ + + T G +++E
Sbjct: 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNV-------VLTREPGGTLLNE 67
Query: 58 YLRKKI----ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG-- 111
+R + L + L F A R E + I + +L Q
Sbjct: 68 SVRNLLFKAQGLDSLSELLFFIAMRRE-------HFVKII-----------KPSLMQKKI 109
Query: 112 --CTNDRYSFSGVAFSAAKEGMDISWCFQPEKGL--PKPDAVLLFKLN-EEALQRRKGFG 166
C DR+ S +A+ +G+D S Q + PD + ++ E+L R
Sbjct: 110 VIC--DRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSC--- 164
Query: 167 DERYEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
YE +F +V + + + + I + + I + ++ IK
Sbjct: 165 KNGYEFADMEFYYRVRDGFYDIAKKNPHRCHV-ITDKSETYDIDDINF-VHLEVIKV 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 3e-05
Identities = 43/261 (16%), Positives = 69/261 (26%), Gaps = 101/261 (38%)
Query: 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHI---IDEYLRKK 62
P I F G GK + +N F D + T I I+E+
Sbjct: 1669 PVNLTIHFGG--EKGK---------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 63 I-ELPD---------QAAHLLFSANRWEREPTLTKLIEQGITLEIM----HSSL-ENEKN 107
Q A L +E L +G+ HS L E
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFED------LKSKGLIPADATFAGHS-LGE---- 1766
Query: 108 LDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAV-LLF---KLNEEALQRRK 163
Y+ A ++ + M I V ++F + A+ R +
Sbjct: 1767 ---------YA----ALASLADVMSIE------------SLVEVVFYRGMTMQVAVPRDE 1801
Query: 164 GFGDERY--------------EQTDFQRKVAENYEKLKDNIWI--------------DID 195
G Y Q Q V ++ + I D+
Sbjct: 1802 L-GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 196 ADKDIDTLGLIVKDIVIDTIK 216
A +DT+ ++ I + I
Sbjct: 1861 A---LDTVTNVLNFIKLQKID 1878
Score = 35.0 bits (80), Expect = 0.018
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 160 QRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDI-DTLGLIVKDIVID 213
Q +G G + Y+ + + V W + AD DT G + DIVI+
Sbjct: 1627 QE-QGMGMDLYKTSKAAQDV-----------W-N-RADNHFKDTYGFSILDIVIN 1667
Score = 33.9 bits (77), Expect = 0.050
Identities = 28/168 (16%), Positives = 48/168 (28%), Gaps = 52/168 (30%)
Query: 17 DRSGKTTQAKKLV------DYLNKNNIPSQFVNFPDRT----ISTGHIIDEYLR----KK 62
+ G+ Q L YL N+I + + T +I Y+ K
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 63 IELPDQAAHLLFSANRWEREPTLTKLIE----QGITLE------------------IMHS 100
++ LF A +L+ QG T + ++
Sbjct: 135 RPFDKKSNSALFRAVGEGN----AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 101 SLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-SWCFQPEKGLPKPD 147
S E L + + F+ +G++I W P PD
Sbjct: 191 SAETLSELIRTTLDAEKVFT--------QGLNILEWLENPS---NTPD 227
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 40.7 bits (95), Expect = 1e-04
Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 46/203 (22%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR 78
GK+T K+L L+ + G II+ + P ++ LL
Sbjct: 13 VGKSTTCKRLAAQLDNS------------AYIEGDIINHMVVGGYRPPWESDELL----- 55
Query: 79 WEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ 138
L + IT ++ L + A+
Sbjct: 56 --------ALTWKNITDLTVNFLLAQNDVVLDYIAFPDE---------AEALAQTVQ--- 95
Query: 139 PEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADK 198
K ++ N E L RR R + + E E+ + ID
Sbjct: 96 -AKVDDVEIRFIILWTNREELLRR---DALRKKDEQMGERCLELVEEFES---KGIDERY 148
Query: 199 DIDTLGLIVKDIV--IDTIKKSQ 219
+T L ++ + +K +
Sbjct: 149 FYNTSHLQPTNLNDIVKNLKTNP 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.035
Identities = 30/242 (12%), Positives = 60/242 (24%), Gaps = 64/242 (26%)
Query: 3 SQIPRGAF-IVFEGCDRSGKT-TQAKKLVDYLNKN--NIPSQFVNFPDRTISTGHIIDEY 58
++ F + + C+ +KL+ ++ N + N R H I
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----HSIQAE 233
Query: 59 LRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGC-----T 113
LR+ ++ LL N + + C T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAK-----------AWNAF----------NLSCKILLTT 272
Query: 114 NDRYSFSGVAFSAAKE-GMDISWCFQPEKGLPKPDAVLLF---------KLNEEALQRR- 162
+ ++ + +D L + L L E L
Sbjct: 273 RFKQVTDFLSAATTTHISLD-----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 163 ---KGFGD---ERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDT------LGLIVKDI 210
+ + D + V N +KL I ++ + + L +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 211 VI 212
I
Sbjct: 386 HI 387
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 33.3 bits (75), Expect = 0.043
Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 25/223 (11%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV----NFPDRTISTGHIIDE-------- 57
I EG +GK+T L + + V N +
Sbjct: 26 KISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVL 85
Query: 58 ---YLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTN 114
Y + + + S R + KL + + S+ +++ +
Sbjct: 86 QMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLY 145
Query: 115 DRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR---KGFGDERYE 171
+ + ++ ++ D W + D ++ + E R +G +E+
Sbjct: 146 ESECMNETEWTIYQDWHD--WMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGI 203
Query: 172 QTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDT 214
++ K+ +E W+ K V + +D
Sbjct: 204 PLEYLEKLHYKHES-----WLLHRTLKTNFDYLQEVPILTLDV 241
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 32.7 bits (74), Expect = 0.071
Identities = 30/219 (13%), Positives = 68/219 (31%), Gaps = 24/219 (10%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
++ EG SGKTT Y N + ++ V G + E + K +
Sbjct: 22 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVE--KWRNVNGVNLLELMYKDPKKWAMP 79
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
+ + L+IM S+ + + S ++ +E
Sbjct: 80 FQSYVTLTMLQS-----HTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEE 134
Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR---KGFGDERYEQTDFQRKVAENYEK- 185
+ D ++ + + E R + +E + +++ E +E
Sbjct: 135 WYKFIEESIH----VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDW 190
Query: 186 -------LKDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
+ + +DAD +++ +G + +I
Sbjct: 191 LIHQRRPQSCKVLV-LDADLNLENIGTEYQRS-ESSIFD 227
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 32.4 bits (73), Expect = 0.086
Identities = 26/236 (11%), Positives = 76/236 (32%), Gaps = 31/236 (13%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN-------FPDRTISTGHIIDEYLRKK 62
+ EG GK+T K L + ++ ++ V ++ T + L
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMM 63
Query: 63 IELPDQAAHLL---FSANRWE--REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRY 117
P + ++ +R + EP KL++ ++I S+ +++ + +
Sbjct: 64 YREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENG 123
Query: 118 SFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR---KGFGDERYEQTD 174
S S + + ++ + + + + + +R + +E+ +
Sbjct: 124 SLSDIEWHIYQDWHS--FLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELA 181
Query: 175 FQRKVAENYEKLKDNIWID-------------IDADKDIDTLGLIVKDIVIDTIKK 217
+ ++ +E + +D + D +D+ + +
Sbjct: 182 YLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDL-MREVNT 236
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 30.7 bits (70), Expect = 0.27
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 16/64 (25%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
MA ++ G +GK TQA + + IP ISTG + LR
Sbjct: 1 MAHHHHHHMRLILLGAPGAGKGTQANFIKEKF---GIPQ---------ISTGDM----LR 44
Query: 61 KKIE 64
++
Sbjct: 45 AAVK 48
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.0 bits (68), Expect = 0.44
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 15 GCDRSGKTTQAKKLVDYLNKNNIP 38
G RSGKTT A +L L + I
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGIS 52
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 29.3 bits (65), Expect = 0.81
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD 46
+V G G TT ++ +D L K + + V+F
Sbjct: 6 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 29.0 bits (65), Expect = 0.82
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 15 GCDRSGKTTQAKKLVDYLNKNNIPSQ 40
G SGKTT AK L +L ++ SQ
Sbjct: 28 GVTNSGKTTLAKNLQKHLPNCSVISQ 53
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 29.0 bits (65), Expect = 0.89
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 15/75 (20%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYL-----NKNNIPSQF----------VNFP 45
P+ +VF G +GK+ + ++ + N S F
Sbjct: 51 FLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLD 110
Query: 46 DRTISTGHIIDEYLR 60
D T + D Y+R
Sbjct: 111 DATTTCWTYFDTYMR 125
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 29.4 bits (66), Expect = 0.92
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43
+ I+ G GK+T +K L L+KNNI +
Sbjct: 1 MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 28.6 bits (65), Expect = 0.94
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 30 DYLNKNNIPSQFVNFP---DRTISTGHIIDEYLRKKIEL 65
D+LN NN+P+ V +P + S I I+L
Sbjct: 61 DWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDL 99
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.9 bits (64), Expect = 1.0
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIS 50
+ G GK+T K+ + L+ I ++ +N+ D ++
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLA 43
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug
gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 29.4 bits (65), Expect = 1.1
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37
+P + +G GKTT + LV ++++I
Sbjct: 1 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDI 33
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.8 bits (64), Expect = 1.1
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLN 33
M++ V G SGK+ A ++ L+
Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLH 33
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.8 bits (65), Expect = 1.3
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
MAS++ R V G SGK T +++ + +S+GH + E ++
Sbjct: 23 MASKLLR---AVILGPPGSGKGTVCQRIAQNF---GLQH---------LSSGHFLRENIK 67
Query: 61 KKIELPDQA 69
E+ + A
Sbjct: 68 ASTEVGEMA 76
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.5 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLN 33
I+ EG D K+T A KL L
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELK 26
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 28.9 bits (64), Expect = 1.4
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 3 SQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN 36
S + I +G GK+T + + + +
Sbjct: 2 SHMVTIVRIYLDGVYGIGKSTTGRVMASAASGGS 35
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 28.8 bits (65), Expect = 1.6
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLN 33
I+ G + +GK K L ++++
Sbjct: 46 ILINGIEGAGKGETVKLLNEWMD 68
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway,
glycoside hydrolase family 3 starch binding domain;
2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A*
2x2j_A*
Length = 1027
Score = 28.5 bits (63), Expect = 1.9
Identities = 4/22 (18%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 177 RKVAENYEKLK---DNIWIDID 195
++ E Y+ + + +D+D
Sbjct: 382 EEIVEGYQNNNFPFEGLAVDVD 403
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 28.5 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 168 ERYEQTDFQRKVAENYEKLK---DNIWIDID 195
Y + R VA+ Y + D I++DID
Sbjct: 172 WGYTTKEDFRAVAKGYRENHIPIDMIYMDID 202
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.8 bits (61), Expect = 2.0
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNK 34
M +++ I+ G +GK+ + L L +
Sbjct: 1 MTTRM-----IILNGGSSAGKSGIVRCLQSVLPE 29
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus
norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A*
2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 28.4 bits (63), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 20 GKTTQAKKLVDYLNKNNIPSQFVNF 44
GKT +KKL YLN +P++ N
Sbjct: 51 GKTYISKKLTRYLNFIGVPTREFNV 75
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 27.9 bits (63), Expect = 2.3
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 16/63 (25%)
Query: 2 ASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK 61
+ P+G V G +GK TQA KL + ++TG + LR
Sbjct: 10 VPESPKGVRAVLLGPPGAGKGTQAPKLAKNF---CVCH---------LATGDM----LRA 53
Query: 62 KIE 64
+
Sbjct: 54 MVA 56
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.9 bits (63), Expect = 2.5
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
V G SGK T + ++ + + +S+G ++ + + + E+ A
Sbjct: 10 AVIMGAPGSGKGTVSSRITTHF---ELKH---------LSSGDLLRDNMLRGTEIGVLA 56
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
13124, center for structural genomics of infectious DI
csgid; 1.85A {Clostridium perfringens}
Length = 351
Score = 28.1 bits (63), Expect = 2.5
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTND---RYS 118
+ +E GI ++ +S + N +++ + Y
Sbjct: 97 AEQGVEAGIFDKLDYSKIPNASEMNEKAKSTVEAGYG 133
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 28.1 bits (62), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD 46
IV G GKT +KKL YLN +P++ N +
Sbjct: 38 IVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics; 1.80A {Thermus thermophilus}
Length = 186
Score = 27.5 bits (62), Expect = 3.0
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 12/47 (25%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL 65
+GK TQA +L L +STG I+ +++ + L
Sbjct: 15 AGKGTQASRLAQEL---GFKK---------LSTGDILRDHVARGTPL 49
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 27.5 bits (62), Expect = 3.0
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 16/54 (29%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
++ G SGK TQ + + + +STG + LR+ I+
Sbjct: 8 LILIGAPGSGKGTQCEFIKKEY---GLAH---------LSTGDM----LREAIK 45
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 27.5 bits (62), Expect = 3.0
Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 75/210 (35%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR 78
SGK TQ +K+V K +STG ++ + + +
Sbjct: 20 SGKGTQCEKIVQ---KYGYTH---------LSTGDLLRSEVSSGSARGKKLS-------- 59
Query: 79 WEREPTLTKLIEQG------ITLEIMHSSLENEKNLDQGCTND---RYSFSGVAFSAAKE 129
+++E+G L+++ ++ + N +G D R G F
Sbjct: 60 --------EIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEF----- 106
Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEA-----LQRRKGFG-------------DERYE 171
E+ + +P +L E L+R + G + Y+
Sbjct: 107 ----------ERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYK 156
Query: 172 QTDFQRKVAENYEKLKDNIWIDIDADKDID 201
T V YEK I ++A+ +D
Sbjct: 157 AT---EPVIAFYEKR--GIVRKVNAEGSVD 181
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 27.6 bits (61), Expect = 3.2
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 15/75 (20%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVNFP------------- 45
IP+ + F G +GK+ L+ +L + + + +F
Sbjct: 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVD 178
Query: 46 DRTISTGHIIDEYLR 60
D T + D YLR
Sbjct: 179 DATHACWRYFDTYLR 193
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 27.1 bits (61), Expect = 3.7
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 16/54 (29%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
+V G +GK TQA L + + ++TG + LR +I
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERF---HAAH---------LATGDM----LRSQIA 44
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 27.2 bits (61), Expect = 3.8
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 16/46 (34%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
SGK TQ+ L +STG + LR+ E
Sbjct: 40 SGKGTQSLNLKKSH---CYCH---------LSTGDL----LREAAE 69
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 27.5 bits (61), Expect = 3.8
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 24 QAKKLVDYLNKNNIPSQFVNFPD 46
+L+ L + PD
Sbjct: 531 PLLRLMGELLARGKTFEAHIIPD 553
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A
{Pseudomonas aeruginosa} PDB: 3ttk_A
Length = 346
Score = 27.3 bits (61), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSF 119
L K I+ G+ ++ S L N KNL++ +
Sbjct: 67 LAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVS 101
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 27.5 bits (60), Expect = 3.9
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37
++P + +G GKTT + LV ++++I
Sbjct: 42 PEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDI 78
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.0 bits (59), Expect = 3.9
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 3 SQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI 37
+ G ++ G SGK+T A+ L + +
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKV 38
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 27.5 bits (62), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 4 QIPRGAFIVFEGCDRSGKTTQA 25
+PR A IVF G SGK++ A
Sbjct: 42 DLPRDALIVFTGLSGSGKSSLA 63
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 27.3 bits (60), Expect = 4.2
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP 45
I G +GK+T + ++ L P
Sbjct: 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENP 37
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 27.1 bits (61), Expect = 4.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 16/45 (35%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI 63
+GK TQA KL + L IP ISTG + R+ I
Sbjct: 31 AGKGTQAVKLAEKL---GIPQ---------ISTGEL----FRRNI 59
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein;
polyamine binding, SYPH spermidine, lipoprotein,
transport protein; HET: MES; 1.78A {Treponema pallidum}
Length = 343
Score = 27.3 bits (61), Expect = 4.3
Identities = 3/25 (12%), Positives = 12/25 (48%)
Query: 85 LTKLIEQGITLEIMHSSLENEKNLD 109
++ + + + +I S + N + +
Sbjct: 84 VSIMKRKHLLEKIDLSKIPNVQFIK 108
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus
radiodurans} PDB: 2vf8_A*
Length = 842
Score = 27.5 bits (62), Expect = 4.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 5 IPRGAFIVFEGCDRSGKTTQA 25
+PR A +VF G SGK++ A
Sbjct: 33 VPRDALVVFTGVSGSGKSSLA 53
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 27.0 bits (60), Expect = 4.6
Identities = 3/42 (7%), Positives = 13/42 (30%), Gaps = 7/42 (16%)
Query: 184 EKLKDNIWIDIDADKDIDTLGLIVKD---IVIDTIKKSQFSP 222
++ +++ D + + V+ ++P
Sbjct: 6 TQVSGPVYVVEDNYYVQENSMVYFGAKGVTVVGA----TWTP 43
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 26.7 bits (60), Expect = 4.6
Identities = 36/220 (16%), Positives = 61/220 (27%), Gaps = 95/220 (43%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR 78
SGK TQ +KLV+ F +STG ++ E L + E
Sbjct: 23 SGKGTQCEKLVEKYG----------FTH--LSTGELLREELASESERSKLIR-------- 62
Query: 79 WEREPTLTKLIEQG------ITLEI----MHSSLENEK---------NLDQGCTNDRYSF 119
++E+G I LE+ M +SL + + + QG
Sbjct: 63 --------DIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQG-------- 106
Query: 120 SGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA-----LQRRKGFG-------- 166
F + + P V+ + + LQ +
Sbjct: 107 --EEF---------------GRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKT 149
Query: 167 -----DERYEQTDFQRKVAENYEKLKDNIWIDIDADKDID 201
+ Y + V YE I+A+ +
Sbjct: 150 IAKRLEAYYRAS---IPVIAYYETK--TQLHKINAEGTPE 184
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine;
HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Length = 340
Score = 27.3 bits (61), Expect = 4.9
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSF 119
L K I+ G ++ S L N KNLD
Sbjct: 64 LGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVS 98
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter,
binding protein; structural genomics, niaid; HET: EPE;
1.50A {Streptococcus pneumoniae TCH8431}
Length = 330
Score = 26.8 bits (60), Expect = 5.4
Identities = 4/25 (16%), Positives = 15/25 (60%)
Query: 85 LTKLIEQGITLEIMHSSLENEKNLD 109
+ K+ ++ + + + +S +E +N+
Sbjct: 68 INKMKDEDLLVPLDYSKIEGIENIG 92
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine
binding protein (POTF); 2.20A {Escherichia coli} SCOP:
c.94.1.1
Length = 344
Score = 26.9 bits (60), Expect = 5.4
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSF 119
L + + G+ + S L KNLD
Sbjct: 63 LERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKH 97
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 26.8 bits (60), Expect = 5.5
Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 83/215 (38%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR 78
+GK TQ +KLV + +S G + LR +
Sbjct: 26 AGKGTQCEKLVK---DYSFVH---------LSAGDL----LRAEQGRAGS---------- 59
Query: 79 WEREPTLTKLIEQG------ITLEIMHSSLENEKNLDQGCTNDRYSFSG--------VAF 124
+ + I++G ITL + L N + + ++ G ++F
Sbjct: 60 -QYGELIKNCIKEGQIVPQEITLAL----LRNAISDNVKANKHKFLIDGFPRKMDQAISF 114
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA-----LQRRKGFG------------- 166
E+ + + +L F E+ L+R K G
Sbjct: 115 ---------------ERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRF 159
Query: 167 DERYEQTDFQRKVAENYEKLKDNIWIDIDADKDID 201
+ E + V E +E + + + D+ ++
Sbjct: 160 NTFKETS---MPVIEYFETK--SKVVRVRCDRSVE 189
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
c.94.1.1 PDB: 1poy_1*
Length = 325
Score = 26.8 bits (60), Expect = 5.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 85 LTKLIEQGITLEIMHSSLENEKNLD 109
+ K+ ++G+ +I S L N NLD
Sbjct: 64 VDKMRKEGMIQKIDKSKLTNFSNLD 88
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 26.7 bits (60), Expect = 5.7
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 12/42 (28%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTG 52
IV G +GK TQA+++++ IP ISTG
Sbjct: 3 IVLMGLPGAGKGTQAEQIIEKY---EIP---------HISTG 32
>1jm0_A Protein (four-helix bundle model); alpha-helical bundle, protein
design, de novo protein; 1.70A {Synthetic} SCOP:
k.8.1.1 PDB: 1jmb_A 1ovu_A 1ovv_A 1lt1_A 1ec5_A 1nvo_A
1ovr_A 2kik_A 1u7j_A 1y47_A 1mft_A 1u7m_A
Length = 50
Score = 24.7 bits (53), Expect = 5.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 57 EYLRKKIELPDQAAHLLFSANRWEREPTLTKLIE 90
+YLR+ ++L QA A + + P L K++E
Sbjct: 2 DYLRELLKLELQAIKQYREALEYVKLPVLAKILE 35
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 26.8 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 169 RYEQTDFQRKVAENYEKLKDNI-WIDIDADKDIDTLG 204
R E TD +R E EKL +++ W+ + D+ D G
Sbjct: 51 RIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGG 87
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 26.8 bits (59), Expect = 6.6
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 170 YEQTDFQRKVAENYEKLK---DNIWIDID 195
Y+ + + + D + DID
Sbjct: 302 YQNDSEIASLYDEMVAAQIPYDVQYSDID 330
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 26.7 bits (60), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 169 RYEQTDFQRKVAENYEKLKDNI-WIDIDADKDIDTLG 204
R E TD QR E+Y L D + W+ +D D+ + G
Sbjct: 44 RIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGG 80
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 26.7 bits (59), Expect = 6.8
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQ 40
SGK+T +K+++ L +N + +
Sbjct: 36 SGKSTVCEKIMELLGQNEVEQR 57
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5;
1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB:
1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 26.4 bits (59), Expect = 7.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 16/54 (29%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
I+ G +GK TQA+ +++ IP ISTG + LR ++
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKY---GIPQ---------ISTGDM----LRAAVK 40
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.7 bits (60), Expect = 7.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 4 QIPRGAFIVFEGCDRSGKTTQA 25
+IPRG +V G SGK++ A
Sbjct: 40 EIPRGKLVVLTGLSGSGKSSLA 61
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 26.4 bits (59), Expect = 7.5
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 16/53 (30%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI 63
+VF G +GK TQAK+L ISTG I LR+ +
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEK---GFVH---------ISTGDI----LREAV 39
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 26.3 bits (59), Expect = 7.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 19 SGKTTQAKKLVDYLNKNN 36
+GKTT A KL + K
Sbjct: 109 TGKTTTAGKLAYFYKKKG 126
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 26.3 bits (57), Expect = 8.5
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 24 QAKKLVDYLNKNNIPSQFVNFPD--RTISTGHIIDEYLRKKIELPDQAAHLLFSANRWER 81
QA+ + L + + V R + T I E L+ + +L + +F +WE
Sbjct: 74 QARLAGEALLDSGVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEWMKWEA 133
Query: 82 E 82
Sbjct: 134 S 134
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 25.8 bits (56), Expect = 9.7
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIP 38
+ G GKTT K + L + +P
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVP 31
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET:
CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Length = 192
Score = 25.8 bits (56), Expect = 9.7
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPD 147
+ E G+ L M + ++K++ + + A AA ++ F + L D
Sbjct: 10 IREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTR-ALQAASAPEELVALFPVQSELTFSD 68
Query: 148 AVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKD 199
L + +E G++ E + ++ + + D K+
Sbjct: 69 YKTLCAVGDE-------MGNKNLEFDQLIQNISPEINDILSINEMAEDEVKN 113
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 26.5 bits (59), Expect = 9.9
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 13/50 (26%)
Query: 169 RYEQTDFQRKVAENYEKLKD--------NIWIDIDA----DKDIDTLGLI 206
DF+ V ++++ N ++ ID K+I L +
Sbjct: 232 LANPQDFEGSVVAILDRMRRIFKKVMELNGFLCIDMESYRHKEI-ILEVF 280
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.0 bits (57), Expect = 10.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 19 SGKTTQAKKLVDYLNKNNIPSQ 40
SGK++ K+V L +N + +
Sbjct: 33 SGKSSVCAKIVQLLGQNEVDYR 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,522,137
Number of extensions: 211062
Number of successful extensions: 894
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 117
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)