RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16874
(227 letters)
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 112 bits (281), Expect = 1e-31
Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 20/221 (9%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RGA IV EG DR+GK+TQ++KLV+ L ++ + FP+R+ G ++ YL+KK ++
Sbjct: 2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
D + HLLFSANRWE ++ + + DRY+FSGVAF+
Sbjct: 62 DHSVHLLFSANRWE-----------------QVPLIKEKLSQGVTLVVDRYAFSGVAFTG 104
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
AKE + WC QP+ GLPKPD VL +L +R FG ERYE FQ + + +L
Sbjct: 105 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 164
Query: 187 ---KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE 224
W +DA K I+ + ++ + D I + PL
Sbjct: 165 MKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLG 205
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 91.5 bits (226), Expect = 2e-23
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 26/220 (11%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
RG I+ EG DR+GKTTQ L L N + FP+R+ G +I+EYL
Sbjct: 2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK---LLKFPERSTRIGGLINEYLTDD---- 54
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
+ + + L + + + + YS + +
Sbjct: 55 ----------SFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAK 104
Query: 127 AKEGMDISWCFQPEKGLPKPDA-VLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK 185
GMD+ WC QP+ GL KPD + L + + + GFGDERYE FQ KV + + K
Sbjct: 105 GTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMK 164
Query: 186 L-------KDNIWIDIDA-DKDIDTLGLIVKDIVIDTIKK 217
L D +D +K I + ++ IV +
Sbjct: 165 LLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLST 204
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 88.1 bits (217), Expect = 4e-22
Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 20/220 (9%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
R +IV EG + +GKTT +V+ L + I + L
Sbjct: 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDI---- 56
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
S L+ ++++ + ++ DR+ S A+
Sbjct: 57 -------KSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQG 109
Query: 127 AKEGMD---ISWCFQPEKGLPKPDAVLLFKLNEEALQRR----KGFGDERYEQTDFQRKV 179
G+D ++ G +PD L + E +R E DF +
Sbjct: 110 GGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRT 169
Query: 180 AENYEKL--KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
Y +L +D IDA + ++ + ++ V +K+
Sbjct: 170 RARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 209
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 73.2 bits (178), Expect = 1e-16
Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 18/207 (8%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL---- 65
I EG D +GK T +KL + FP S I
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61
Query: 66 -PDQAAHLLFSANRWEREPTLTKLIEQGITL---EIMHSSLENEKNLDQGCTNDRYSFSG 121
A L + + + ++ + L + ++
Sbjct: 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121
Query: 122 VAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQ-TDFQRKVA 180
A W L A L + + QR G + YE+ + Q++
Sbjct: 122 RIEFARLGLPKPDWQV-----LLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTG 176
Query: 181 ENYEKLKDNI----WIDIDADKDIDTL 203
Y +L W+ + AD D L
Sbjct: 177 AVYAELAAQGWGGRWLVVGADVDPGRL 203
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 70.4 bits (171), Expect = 2e-15
Identities = 31/240 (12%), Positives = 64/240 (26%), Gaps = 29/240 (12%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
R I EG +GK+T L + + V ST +E +
Sbjct: 1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 60
Query: 67 DQAAHLLFSANRWEREP---TLTKLIEQGITLEIMHSSLENEKNLDQGCT--NDRYSFSG 121
+ + RW I + + L + +DRY F+
Sbjct: 61 NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 120
Query: 122 VAFSAAKEG--------MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQT 173
+ + W + D ++ + E R EQ
Sbjct: 121 NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQG 180
Query: 174 ---DFQRKVAENYEKL-------------KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
++ K+ +E ++ + +D ++D + + V + +
Sbjct: 181 IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST 240
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 61.6 bits (148), Expect = 2e-12
Identities = 29/201 (14%), Positives = 65/201 (32%), Gaps = 21/201 (10%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
+ ++ EG SGKTT Y N + ++ V + Y K
Sbjct: 8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAM 67
Query: 67 DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
+++ + + PT KL ++ + C + +G
Sbjct: 68 PFQSYVTLTMLQSHTAPTNKKLKIMERSIFS-----------ARYCFVENMRRNGSLEQG 116
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR---KGFGDERYEQTDFQRKVAENY 183
++ + F E + D ++ + + E R + +E + +++ E +
Sbjct: 117 MYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELH 176
Query: 184 E-------KLKDNIWIDIDAD 197
E + + + +DAD
Sbjct: 177 EDWLIHQRRPQSCKVLVLDAD 197
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 62.0 bits (149), Expect = 3e-12
Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 31/236 (13%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF-------PDRTISTGHIIDEYLRKK 62
+ EG GK+T K L + ++ ++ V ++ T + L
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMM 63
Query: 63 IELPDQ-----AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRY 117
P + S + + EP KL++ ++I S+ +++ + +
Sbjct: 64 YREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENG 123
Query: 118 SFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQ---TD 174
S S + + ++ S+ + + + + +R E+
Sbjct: 124 SLSDIEWHIYQD--WHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELA 181
Query: 175 FQRKVAENYEKL-------------KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
+ ++ +E + + +D + D +D+ + +
Sbjct: 182 YLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDL-MREVNT 236
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 56.2 bits (135), Expect = 4e-10
Identities = 28/198 (14%), Positives = 53/198 (26%), Gaps = 23/198 (11%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD---RTISTGHIIDEYLR------ 60
I +G GKTT A++ + + + P R ++ I
Sbjct: 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRL 66
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCT--NDRYS 118
P+ A L P + + L +S + N + +DR+
Sbjct: 67 NGDVSPEDAQRLTAHFQSLFCSP-HAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHP 125
Query: 119 FSGVAFSAA--KEGMDISWC-----FQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDERY 170
+ D+S P +++ ++ L R
Sbjct: 126 IASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARP-G 184
Query: 171 EQTD--FQRKVAENYEKL 186
E + F + Y L
Sbjct: 185 ETVNLPFVMVLRNVYIML 202
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 54.3 bits (129), Expect = 7e-10
Identities = 27/212 (12%), Positives = 62/212 (29%), Gaps = 25/212 (11%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD--RTISTGHIIDEYLRKKIELPD 67
+ G GK+T K+ + L+ I ++ +N+ D + + + +L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 68 QAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA 127
+ L E + ++ L +
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSY------------- 109
Query: 128 KEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE--RYEQTDFQRKVAENYEK 185
+ L ++L + + + R + DE E +F R A
Sbjct: 110 ---VITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAV 166
Query: 186 L-KDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216
L + + ++ + D + +I I ++K
Sbjct: 167 LAGSTVKVIVNVEGDPS---IAANEI-IRSMK 194
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 53.5 bits (128), Expect = 4e-09
Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 25/202 (12%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIID-EYLRKKI 63
+P + +G GKTT + LV ++++I V P+ + E +
Sbjct: 1 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDI----VYVPEPMTYWRVLGASETIANIY 56
Query: 64 ELPDQAAHLLFSANRWEREPTLTKL-------IEQGITLEIMHSSLENEKNLDQGCTN-- 114
+ SA T ++ + + + + T
Sbjct: 57 TTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIF 116
Query: 115 DRYSFSGVAFSA--AKEGMDISWC-----FQPEKGLPKPDAVLLFKLN-EEALQRRKGFG 166
DR+ + + ++ ++L L + + R
Sbjct: 117 DRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQ 176
Query: 167 DERYEQTD--FQRKVAENYEKL 186
E+ D + Y L
Sbjct: 177 RP-GERLDLAMLAAIRRVYGLL 197
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 52.3 bits (124), Expect = 4e-09
Identities = 27/208 (12%), Positives = 66/208 (31%), Gaps = 21/208 (10%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
+V G G TT ++ +D L K + + V+F +E L + +
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF--EVAKEENLVSDRDQMRKM 60
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
+ + ++ ++ HS++ K G +
Sbjct: 61 DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWV------------- 107
Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD- 188
++ D +L+ ++++E R + R A +Y L
Sbjct: 108 -LNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGA 166
Query: 189 NIWIDIDADKDIDTLGLIVKDIVIDTIK 216
+ I + + +D V+++ + ++
Sbjct: 167 TVKIVQNRNGLLD---QAVEEL-TNVLR 190
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 50.4 bits (120), Expect = 4e-08
Identities = 23/200 (11%), Positives = 48/200 (24%), Gaps = 17/200 (8%)
Query: 3 SQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST-GHIIDEYLRK 61
S + I +G GK+T + + + + F + + +
Sbjct: 1 SHMVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYD 60
Query: 62 KIELPDQAAHLLFSANRW---------EREPTLTKLIEQGITLEIMHSSLENEKN--LDQ 110
Q + A L + + + D+
Sbjct: 61 TQNRKQQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDR 120
Query: 111 GCTNDRYSFSGVAFSAAK-EGMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDE 168
F + + P+ +++ LN EE ++R +
Sbjct: 121 HPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTRARI 180
Query: 169 RYEQTD--FQRKVAENYEKL 186
EQ D + Y L
Sbjct: 181 -GEQIDITLIATLRNVYFML 199
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 48.0 bits (113), Expect = 1e-07
Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 31/209 (14%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
+V G +GK TQA+K+V + ISTG + +++ L QA
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPH------------ISTGDMFRAAMKEGTPLGLQAK 50
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
+ + E T+ + E+ + L G + A G
Sbjct: 51 QYMDRGDLVPDEVTIGIVRER------LSKDDCQNGFLLDGFPRTVAQAEALETMLADIG 104
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
+ + + L NE + R + +Q + + + YE+
Sbjct: 105 RKLDYVIHIDVRQDVLMERLTADDNEATVANRL---EVNMKQM---KPLVDFYEQK--GY 156
Query: 191 WIDIDADKDIDTLGLIVKDI--VIDTIKK 217
+I+ ++D++ + DI ++ + +
Sbjct: 157 LRNINGEQDMEK---VFADIRELLGGLAR 182
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 48.0 bits (113), Expect = 1e-07
Identities = 34/231 (14%), Positives = 77/231 (33%), Gaps = 52/231 (22%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
M ++ + I G SGK TQ +K+V + +STG ++ +
Sbjct: 1 MEEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTH------------LSTGDLLRAEVS 48
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
+ ++ +L+ L+++ ++ + + +G
Sbjct: 49 SGSARGKMLSEIMEK----------GQLVPLETVLDMLRDAMVAKVDTSKG--------- 89
Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERY----EQTDFQ 176
F ++ + E+ + +P +L E + +R E + +
Sbjct: 90 ---FLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETI 146
Query: 177 RKVAENYEKL---------KDNIWIDIDADKDIDTLGLIVKDI--VIDTIK 216
+K E Y K K I ++A+ +D + + +DT+K
Sbjct: 147 KKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDD---VFSQVCTHLDTLK 194
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 45.7 bits (107), Expect = 8e-07
Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 41/208 (19%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
++ G +GK TQA KL + L ISTG + + + +L +A
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQ------------ISTGELFRRNIEEGTKLGVEAK 50
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
L + + ++ + +++ N F + + E
Sbjct: 51 RYLDAGDLVPS--------------DLTNELVDDRLNNPD----AANGFILDGYPRSVEQ 92
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK----L 186
+G DAVL F+++EE L R + D + Y L
Sbjct: 93 AKALHEMLERRGT-DIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPL 151
Query: 187 KD---NIWIDIDADKDIDTLGLIVKDIV 211
+ + +DA +D + +
Sbjct: 152 LEYYRDQLKTVDAVGTMDE---VFARAL 176
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 44.9 bits (105), Expect = 1e-06
Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 36/209 (17%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST--GHIIDEYLRKKIELPDQ 68
+V G +GK TQA L + + ++ + + T G + + + + D
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD 64
Query: 69 AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK 128
+ I G I + ++ +QG ++ V
Sbjct: 65 IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLV 124
Query: 129 EGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD 188
+ + + +R + + QT + + Y+K
Sbjct: 125 ARITNADALK---------------------KRLAAY----HAQT---EPIVDFYKKT-- 154
Query: 189 NIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
IW +DA + T + DI ++ + K
Sbjct: 155 GIWAGVDASQPPAT---VWADI-LNKLGK 179
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 44.6 bits (104), Expect = 2e-06
Identities = 27/207 (13%), Positives = 67/207 (32%), Gaps = 25/207 (12%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
+ G SGK TQ +V ++ + D + +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHL-----SAGDLLRQEQQSGSKDGEMIATMIKNGE 63
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
+ + + + ++ + EN + ++ D V F
Sbjct: 64 IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEE-NMKDFVDTKFVLF------ 116
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
D ++ L + ++ N E++++R + QT + V ++Y K +
Sbjct: 117 FDCPEEVMTQRLLKRGESSGRSDDNIESIKKRF---NTFNVQT---KLVIDHYNKF--DK 168
Query: 191 WIDIDADKDIDTLGLIVKDI--VIDTI 215
I A++D++ + D+ + ++
Sbjct: 169 VKIIPANRDVNE---VYNDVENLFKSM 192
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 44.5 bits (104), Expect = 2e-06
Identities = 28/209 (13%), Positives = 61/209 (29%), Gaps = 36/209 (17%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
++ G SGK TQ + + + IS G ++ + E +A
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAH------------ISAGDLLRAEIAAGSENGKRAK 53
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
+ +++ + + + L G + +
Sbjct: 54 EFMEKGQLVPD-----EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPD 108
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
I E + + F EE ++ R + Y+ + YE NI
Sbjct: 109 TFILLDVPDELLVERVV----FDDTEEKVKLRL---ETYYQNI---ESLLSTYE----NI 154
Query: 191 WIDIDADKDIDTLGLIVKDI--VIDTIKK 217
+ + D +D + I ++ +I +
Sbjct: 155 IVKVQGDATVDA---VFAKIDELLGSILE 180
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 44.1 bits (103), Expect = 2e-06
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 29/200 (14%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
IV G +GK TQA ++V+ + ISTG + +++ EL +A
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPH------------ISTGDMFRAAIQEGTELGVKAK 50
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
+ ++ + + GI E + S + L G + A G
Sbjct: 51 SFM------DQGALVPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMG 104
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
I + + A L N + + R + QT + Y+ +
Sbjct: 105 RKIEHVLNIQVEKEELIARLTADDNPDTVTNRL---EVNMNQT---APLLAFYD--SKEV 156
Query: 191 WIDIDADKDIDTLGLIVKDI 210
++I+ KDI + KD+
Sbjct: 157 LVNINGQKDIKD---VFKDL 173
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 41.5 bits (96), Expect = 2e-05
Identities = 28/221 (12%), Positives = 66/221 (29%), Gaps = 49/221 (22%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
I G +GK TQ +KLV + + +S G ++ + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVH------------LSAGDLLRAEQGRAGSQYGELI 58
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
+ + I + L N + + ++ G
Sbjct: 59 KNCIKEGQIVPQE-------------ITLALLRNAISDNVKANKHKFLIDG-------FP 98
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQR----KVAENYEKL 186
+ E+ + + +L F E+ + R + ++D K +++
Sbjct: 99 RKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKET 158
Query: 187 ---------KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS 218
+ + + D+ ++ + KD+ D I+ S
Sbjct: 159 SMPVIEYFETKSKVVRVRCDRSVED---VYKDV-QDAIRDS 195
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 41.1 bits (95), Expect = 3e-05
Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 54/213 (25%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
I+ G +GK TQA+ +++ ISTG ++ ++ EL QA
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQ------------ISTGDMLRAAVKSGSELGKQAK 50
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
++ + KL+ + + ++ + E + F
Sbjct: 51 DIMDAG----------KLVTDELVIALVKERIAQEDCRNG-------------FLLDGFP 87
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRR----------KGFGDERYEQTDFQRKVA 180
I ++ D VL F + +E + R + E ++ T +
Sbjct: 88 RTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMT---APLI 144
Query: 181 ENYEK---LKDNIWIDIDADKDIDTLGLIVKDI 210
Y K + + +D K + + D+
Sbjct: 145 GYYSKEAEAGNTKYAKVDGTKPVAE---VRADL 174
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 40.3 bits (93), Expect = 6e-05
Identities = 38/216 (17%), Positives = 62/216 (28%), Gaps = 44/216 (20%)
Query: 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL 65
P+G V G +GK TQA KL + ++TG ++ + EL
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCH------------LATGDMLRAMVASGSEL 48
Query: 66 PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
+ ++ G + EKNL+ + +
Sbjct: 49 GKKLKA----------------TMDAGKLVSDEMVLELIEKNLETPPCKNGFLLD---GF 89
Query: 126 AAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDF-QRKVAENYE 184
EK K D+V+ F + + L RR + + E Y
Sbjct: 90 PRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYH 149
Query: 185 KL---------KDNIWIDIDADKDIDTLGLIVKDIV 211
K I IDA + D + I+
Sbjct: 150 TQTTPLVEYYSKRGIHSAIDASQTPDV---VFASIL 182
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 38.0 bits (87), Expect = 3e-04
Identities = 24/209 (11%), Positives = 60/209 (28%), Gaps = 33/209 (15%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
+ G +GK TQ ++V+ + +S G ++ + + +
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYGYTH------------LSAGELLRDERKNPDSQYGELI 51
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
+ L+++ + + ++ +N+ +D N
Sbjct: 52 EKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDN--------LQGWN 103
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL---- 186
+ L E L+R K G + ++++ +
Sbjct: 104 KTMDGKADVSFVLFFDCNN--EICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPII 161
Query: 187 ----KDNIWIDIDADKDIDTLGLIVKDIV 211
+ IDA K +D + ++V
Sbjct: 162 DLYEEMGKVKKIDASKSVDE---VFDEVV 187
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 36.6 bits (83), Expect = 0.001
Identities = 30/208 (14%), Positives = 50/208 (24%), Gaps = 36/208 (17%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
+ G + SGK+ KL N EY R+
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVFN------------------TTSAWEYGRE-------- 42
Query: 70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
E + + L ++ + D + AF E
Sbjct: 43 ---FVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYE 99
Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN 189
G + K P +LL E + G ++ Q Q + + +K K
Sbjct: 100 GKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQL-LKKLLDKYKVP 158
Query: 190 IWIDIDADKDIDTLGLIVKDIVIDTIKK 217
+ V I+K
Sbjct: 159 YIEIESPSYL------DRYNQVKAVIEK 180
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 34.4 bits (78), Expect = 0.006
Identities = 25/218 (11%), Positives = 54/218 (24%), Gaps = 34/218 (15%)
Query: 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL 65
R G SGK T + ++ + + +S+G ++ + + + E+
Sbjct: 4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKH------------LSSGDLLRDNMLRGTEI 51
Query: 66 PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
A + + E + D + +
Sbjct: 52 GVLAKTFIDQGKLIPDDVM------------TRLVLHELKNLTQYNWLLDGFPRTLPQAE 99
Query: 126 AAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK 185
A I +P E + +R QT V E Y K
Sbjct: 100 ALDRAYQIDTVIN--LNVPFEVIKQRLTDRPETVVKR---LKAYEAQT---EPVLEYYRK 151
Query: 186 LKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
+ + + + ++SQ + +
Sbjct: 152 K--GVLETFSGTETNKIWPHVYAFLQTKLPQRSQETSV 187
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.8 bits (76), Expect = 0.011
Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 24/208 (11%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
IV G GKT +KKL YLN +P++ N + +Y R
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFN-----------VGQYRRD--------- 44
Query: 71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
+ + I + ++L + + F + +
Sbjct: 45 --MVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRA 102
Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
M ++ Q +++ + A + G Y D + +++
Sbjct: 103 MIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYE 162
Query: 191 WIDIDADKDIDTLGLIVKDIVIDTIKKS 218
D++ D +K ++D +
Sbjct: 163 NSYESLDEEQDRDLSYIK--IMDVGQSY 188
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.0 bits (71), Expect = 0.031
Identities = 12/82 (14%), Positives = 26/82 (31%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
I+ GC SGK+T A++ + ++ +Y +KK +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 71 HLLFSANRWEREPTLTKLIEQG 92
+ + + +I
Sbjct: 65 FDTAKSILYGGDSVKGVIISDT 86
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 31.2 bits (69), Expect = 0.068
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD 46
+G I G SGK A+ L LN+ S + D
Sbjct: 5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 44
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 31.1 bits (69), Expect = 0.070
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS 39
P+G I+ G +GKT+ A+ + L+
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 36
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 31.1 bits (69), Expect = 0.071
Identities = 24/211 (11%), Positives = 50/211 (23%), Gaps = 42/211 (19%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
M +++ I+ G +GK+ + L L P+ ++ G
Sbjct: 1 MTTRM-----IILNGGSSAGKSGIVRCLQSVL------------PEPWLAFGVDSLIEAM 43
Query: 61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
+ + P L +G E + + + + +
Sbjct: 44 PLKMQSAEGGIEFDADGGVSIGPEFRAL--EGAWAEGVVAMARAGARIIIDDVFLGGAAA 101
Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
+ + +D+ W A R GD Q V
Sbjct: 102 QERWRSFVGDLDVLWVG--------VRCDG-----AVAEGRETARGDRVAGMAAKQAYVV 148
Query: 181 ENYEKLKDNIWIDIDADKDIDTLGLIVKDIV 211
+ D ++DT +
Sbjct: 149 HEGV----------EYDVEVDTTHKESIECA 169
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.4 bits (67), Expect = 0.11
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEY 58
RG + G +GKTT + L +YL + IP ++ + +
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFS 69
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.0 bits (66), Expect = 0.13
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42
V G SGK+ A ++ L+ + F+
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFL 40
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.9 bits (63), Expect = 0.40
Identities = 13/94 (13%), Positives = 23/94 (24%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
I A G R+GKT + L + + LR +
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 93
Query: 65 LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIM 98
+ + + R T +E +
Sbjct: 94 RFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAK 127
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 29.3 bits (65), Expect = 0.41
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIID 56
I+ G +GKT AK + Y + + N ++ +++ I++
Sbjct: 97 IIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIME 142
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.5 bits (62), Expect = 0.45
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNKNNI 37
+ G GK+T K+L L+ +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY 31
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.4 bits (62), Expect = 0.51
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN 35
G ++ G SGK+T A+ L +
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVP 31
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.2 bits (63), Expect = 0.60
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 15/76 (19%)
Query: 1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYL-----NKNNIPSQF----------VNFP 45
P+ +VF G +GK+ + ++ + N S F
Sbjct: 46 FLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLD 105
Query: 46 DRTISTGHIIDEYLRK 61
D T + D Y+R
Sbjct: 106 DATTTCWTYFDTYMRN 121
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 0.94
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNI 37
I+ G GKTT K+L I
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYI 33
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 1.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN 36
P+G ++ G + GKTT KL Y
Sbjct: 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLG 34
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.2 bits (59), Expect = 1.5
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR 47
+ + I+ G +GKT + V+ N + + +
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES 65
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 27.3 bits (59), Expect = 1.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 19 SGKTTQAKKLVDYLN 33
+GK T K + + L
Sbjct: 14 AGKGTLCKAMAEALQ 28
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 27.2 bits (60), Expect = 1.6
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI 63
++ G F++ G GKTT +++ L + + ++ I + I
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTL-RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83
Query: 64 ELPDQAAHLLFSANRWE 80
+ Q+ L ++
Sbjct: 84 AMVFQSYALYPHMTVYD 100
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 26.8 bits (58), Expect = 1.8
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN 33
P +V G +GK+T ++ +
Sbjct: 12 PNPEVVVAVGFPGAGKSTFIQEHLVSAG 39
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 27.4 bits (60), Expect = 1.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYL 32
I+ G +GKT K+++ Y
Sbjct: 126 ILITGESGAGKTVNTKRVIQYF 147
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 27.4 bits (60), Expect = 1.9
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYL 32
++ G +GKT +KK++ +L
Sbjct: 89 VIISGESGAGKTEASKKIMQFL 110
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 27.4 bits (60), Expect = 2.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYL 32
++ G +GKT KK++ YL
Sbjct: 128 LLITGESGAGKTENTKKVIQYL 149
>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli
[TaxId: 562]}
Length = 149
Score = 26.3 bits (58), Expect = 2.3
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 88 LIEQGITLEIMHSSLENEKNLDQGCTND 115
LI G L + L+ + GC N
Sbjct: 37 LIMLGKQLPALPDELKAQAKEIAGCENR 64
>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
Length = 144
Score = 25.9 bits (57), Expect = 2.6
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 88 LIEQGITLEIMHSSLENEKNLDQGCTND 115
+IE G L + + +N QGC +
Sbjct: 25 IIELGQRLPELRDEDRSPQNSIQGCQSQ 52
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 27.0 bits (59), Expect = 2.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYL 32
+ G +GKT KK++ YL
Sbjct: 124 CLITGESGAGKTENTKKVIMYL 145
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.2 bits (56), Expect = 2.7
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNI 37
I G +GK+T ++L LN
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFY 31
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.0 bits (57), Expect = 3.2
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRKK 62
I +G I G SGK+T L + + IP V ++ +LR++
Sbjct: 25 SIKQGEVIGIVGRSGSGKST----LTKLIQRFYIPENGQVLIDGHDLA--LADPNWLRRQ 78
Query: 63 IELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV 122
+ + Q LL + + + + + + + + N G
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138
Query: 123 AFS 125
S
Sbjct: 139 GLS 141
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 26.2 bits (57), Expect = 3.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYL 32
I+ G +GKT KK++ YL
Sbjct: 94 ILCTGESGAGKTENTKKVIQYL 115
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.7 bits (55), Expect = 4.3
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKK-LVDYLNKNNIPSQFVNFPD-------RTISTGHIID 56
+P G + G +GKT + + L + + + + P FV F + S G +
Sbjct: 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 82
Query: 57 EYLRKKIELPDQAAHLLFSANRW 79
+ + + A+
Sbjct: 83 KLVDEGKLFILDASPDPEGQEVV 105
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 25.7 bits (55), Expect = 4.5
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 19 SGKTTQAKKLVDYLN 33
SGK+T AK +
Sbjct: 14 SGKSTVAKIIAKDFG 28
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 25.6 bits (56), Expect = 4.5
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ-FVNFPDRTISTGHIIDEY-LRK 61
+P G G +GK+T L+ +N P++ V + ++T + R+
Sbjct: 27 HVPAGQIYGVIGASGAGKST----LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR 82
Query: 62 KIELPDQAAHLLFSANRWE 80
+I + Q +LL S +
Sbjct: 83 QIGMIFQHFNLLSSRTVFG 101
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 25.3 bits (54), Expect = 5.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEY 58
IVF G SGK+T A+ L L+ + S F+ I ++
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQK 50
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.1 bits (54), Expect = 6.0
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF 44
I+ G +GK T A KL + K V
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGA 48
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 24.9 bits (53), Expect = 6.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNI 37
I G G TT ++L L +
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFV 31
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.1 bits (53), Expect = 6.4
Identities = 12/60 (20%), Positives = 15/60 (25%)
Query: 5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
I G+ G R+GKT L + G E L E
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 79
>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 209
Score = 24.9 bits (54), Expect = 6.8
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 57 EYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITL 95
+YLR +QA L +A +W+RE + + + + +
Sbjct: 5 DYLRLLTRQAEQANDFLSNARKWDRERWVCQRFLEALNV 43
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 25.2 bits (55), Expect = 7.1
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVNFPDRTISTGHIIDEYLRKK 62
+IP G + G SGK+T + + + +I + + + LR +
Sbjct: 37 KIPAGKTVALVGRSGSGKST----IASLITRFYDIDEGHILMDGHDLREYTL--ASLRNQ 90
Query: 63 IELPDQAAHLLFSANRWE 80
+ L Q HL
Sbjct: 91 VALVSQNVHLFNDTVANN 108
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 25.0 bits (54), Expect = 7.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNN 36
I+ G D S + +L +Y+ K
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFP 43
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
maritima [TaxId: 2336]}
Length = 338
Score = 25.2 bits (55), Expect = 8.1
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV 42
+ C GK T A +L + + I + F+
Sbjct: 160 VGVFGTDCV-VGKRTTAVQLWERALEKGIKAGFL 192
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 25.0 bits (54), Expect = 9.3
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 3 SQIPRGAF-IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN 43
S++ G +VF+ + A+KL+ K I +Q +
Sbjct: 12 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 866,093
Number of extensions: 41191
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 84
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)