RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16875
(324 letters)
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 669 bits (1727), Expect = 0.0
Identities = 267/293 (91%), Positives = 281/293 (95%)
Query: 7 NVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIHG 66
++D +I+RLLE RG RPGK VQ++EAE+RGLCLKSREIFL QPILLELEAPLKICGDIHG
Sbjct: 1 DIDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 60
Query: 67 QYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 126
QY DLLRLFEYGGFPP++NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC
Sbjct: 61 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 120
Query: 127 ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIR 186
ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLP+AAIIDEKIFC HGGLSPDLQ MEQIR
Sbjct: 121 ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGLSPDLQSMEQIR 180
Query: 187 RIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLICRA 246
RIMRPTDVPD GLLCDLLWSDPDKDVQGWGENDRGVSFTFG DVV+KFL+ HDLDLICRA
Sbjct: 181 RIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRA 240
Query: 247 HQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
HQVV+DGYEFFAKRQLVTLFSAPNYCGEFDNAG MMSVDETLMCSFQILKP+E
Sbjct: 241 HQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 293
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 544 bits (1403), Expect = 0.0
Identities = 245/320 (76%), Positives = 281/320 (87%), Gaps = 10/320 (3%)
Query: 5 ELNVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDI 64
E++VD +I+RLL RG +PGK V ++EAEVRGLC+K+R+IF+ QPILLELEAPLKICGD+
Sbjct: 8 EIDVDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDV 67
Query: 65 HGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 124
HGQY DLLRLFEYGG+PP++NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH
Sbjct: 68 HGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 127
Query: 125 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQ 184
ECASINRIYGFYDECKRRY IKLWKTFTDCFNCLP+AA+IDEKI C HGGLSP+L +EQ
Sbjct: 128 ECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELSNLEQ 187
Query: 185 IRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLIC 244
IRRIMRPTDVPDTGLLCDLLWSDPDKDVQGW +N+RGVS+ F ++V FL H+LDLIC
Sbjct: 188 IRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLIC 247
Query: 245 RAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKY 304
RAHQVV+DGYEFF+KRQLVTLFSAPNYCGEFDNAG MM++DE+LMCSFQILKP+E+
Sbjct: 248 RAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQ---- 303
Query: 305 QYTGNSSRPSTPQHNPPKKK 324
+ ++ Q+ P K
Sbjct: 304 ------GQGASQQNKPGSAK 317
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 428 bits (1102), Expect = e-152
Identities = 150/271 (55%), Positives = 196/271 (72%)
Query: 29 MSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPDANYLF 88
+ + E+ L + +EIF Q+P L+E+ AP+ +CGDIHGQ+ DLLRLF+ G PP+ NY+F
Sbjct: 1 LYKEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDKNGQPPETNYVF 60
Query: 89 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLW 148
LGDYVDRG S+E I LL A KI YP LLRGNHE S+N IYGFYDECKR+Y +++
Sbjct: 61 LGDYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKYGERIY 120
Query: 149 KTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIRRIMRPTDVPDTGLLCDLLWSDP 208
+ F + F+ LP+AA+I+ KI C HGGLSPDL ++ IR++ RP + PD GLL DLLWSDP
Sbjct: 121 EKFNEAFSWLPLAALINGKILCMHGGLSPDLTTLDDIRKLKRPQEPPDDGLLIDLLWSDP 180
Query: 209 DKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLICRAHQVVDDGYEFFAKRQLVTLFSA 268
D+ V G+G + RG S+ FG D V +FL ++L LI RAHQVVDDGYEFFA +LVT+FSA
Sbjct: 181 DQPVNGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFADGKLVTIFSA 240
Query: 269 PNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
PNYC F N ++ VD+ L +F+ KP +
Sbjct: 241 PNYCDRFGNKAAVLKVDKDLKLTFEQFKPGK 271
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 410 bits (1055), Expect = e-145
Identities = 174/288 (60%), Positives = 223/288 (77%)
Query: 8 VDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIHGQ 67
V LI+++L +G R + + + E ++R + + REIF+ QP+LLE+ P+++CGD HGQ
Sbjct: 4 VQTLIEKMLTVKGNRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQ 63
Query: 68 YTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 127
Y DLLR+FE GFPP +NYLFLGDYVDRGK S+ETI L YKI YPENFFLLRGNHECA
Sbjct: 64 YYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECA 123
Query: 128 SINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIRR 187
SIN++YGF+D+ KRRYNIKL+K FTD FN +P+ +I EKI C HGGLSPDL + +
Sbjct: 124 SINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGLSPDLTSLASVNE 183
Query: 188 IMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLICRAH 247
I RP DVPD G+LCDLLW+DP+ +V+G+ E+DRGVS+ FG D+V+ FL D+DLI RAH
Sbjct: 184 IERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAH 243
Query: 248 QVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQIL 295
QV++ GY FFA RQLVT+FSAPNYCGEFDN +M++D+ L CSF I+
Sbjct: 244 QVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLII 291
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 389 bits (1002), Expect = e-137
Identities = 147/293 (50%), Positives = 202/293 (68%), Gaps = 10/293 (3%)
Query: 7 NVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIHG 66
++D I++L + + E+EV+ LC K++EI +++ + + +P+ +CGDIHG
Sbjct: 1 DLDKWIEQLKKCE--------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHG 52
Query: 67 QYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 126
Q+ DLL LF GG PPD NYLFLGDYVDRG S+ET LLLA K++YP+ LLRGNHE
Sbjct: 53 QFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHES 112
Query: 127 ASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQI 185
I ++YGFYDEC R+Y N +WK TD F+ LP+AA+ID +IFC HGGLSP + ++QI
Sbjct: 113 RQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGLSPSIDTLDQI 172
Query: 186 RRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLICR 245
R I R +VP G +CDLLWSDPD D++GWG + RG + FG DVV +F HN+ L LICR
Sbjct: 173 RAIDRFQEVPHEGPMCDLLWSDPD-DIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICR 231
Query: 246 AHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPS 298
AHQ+V +GY++ +LVT++SAPNYC N +M +DE L SF++ + +
Sbjct: 232 AHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 311 bits (798), Expect = e-106
Identities = 136/302 (45%), Positives = 198/302 (65%), Gaps = 11/302 (3%)
Query: 6 LNVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIH 65
+++D I LL GC P E +++ +C +++EIFL++ + + AP+ +CGDIH
Sbjct: 1 MDIDRHIATLLNG-GCLP-------ERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIH 52
Query: 66 GQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 125
GQ+ DL LF+ GG P+ANY+F+GD+VDRG S+ET+ LL K+KYP N LLRGNHE
Sbjct: 53 GQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHE 112
Query: 126 CASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQ 184
++YGFY+E R+Y N W+ F D F+CLP+AA+I+ +I C HGGLSPD++ ++Q
Sbjct: 113 SRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGLSPDMRTIDQ 172
Query: 185 IRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLIC 244
IR I R ++P G CDL+WSDP+ +V+ W N RG + FGA V +F +DL LIC
Sbjct: 173 IRTIDRKIEIPHEGPFCDLMWSDPE-EVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLIC 231
Query: 245 RAHQVVDDGYEF-FAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAK 303
RAHQ+V +GY++ F + LVT++SAPNYC N ++ +DE L +++ K + AK
Sbjct: 232 RAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPESAK 291
Query: 304 YQ 305
Sbjct: 292 SI 293
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 290 bits (743), Expect = 2e-97
Identities = 130/296 (43%), Positives = 176/296 (59%), Gaps = 24/296 (8%)
Query: 11 LIQRLLEARGCRPGKTVQ--MSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIHGQY 68
+I LL+ R +P + + E+ LC + +IF Q+P++L L AP+KI GDIHGQ+
Sbjct: 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQF 60
Query: 69 TDLLRLFEYGGFPPDA--------NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
DL+RLF+ G P +YLFLGDYVDRG SLETICLLLA K+KYP L+
Sbjct: 61 GDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLI 120
Query: 121 RGNHECASINRIYGFYDECKRRYN------IKLWKTFTDCFNCLPIAAIIDEKIFCCHGG 174
RGNHE IN ++GF +ECK R +W+ F LP+AAII++KI C HGG
Sbjct: 121 RGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGG 180
Query: 175 LSPDLQMMEQIRRIMRPTDVPDTG-LLCDLLWSDP-DKD-VQGWGENDR-----GVSFTF 226
+ + + +I + RP + ++ DLLWSDP + D V G N G+ F
Sbjct: 181 IGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240
Query: 227 GADVVSKFLHNHDLDLICRAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
G D V +FL +DL +I RAH+ V DG+E FA+ +L+TLFSA NYCG NAG ++
Sbjct: 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAIL 296
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 279 bits (717), Expect = 2e-93
Identities = 110/253 (43%), Positives = 161/253 (63%), Gaps = 7/253 (2%)
Query: 39 LKSREIFLQQPILLELEAP----LKICGDIHGQYTDLLRLFEYGGFPPDAN-YLFLGDYV 93
L+ +E+ + P L+E+ P + +CGD HGQ+ DLL +FE G P + N YLF GD+V
Sbjct: 39 LQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFV 98
Query: 94 DRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTD 153
DRG S+E I L A+K+ YP +F L RGNHE ++N++YGF E K +YN +++ F++
Sbjct: 99 DRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSE 158
Query: 154 CFNCLPIAAIIDEKIFCCHGGL-SPDLQMMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDV 212
FN LP+A +I+ K+ HGGL S D ++ IR+I R PD+GL+C+LLWSDP +
Sbjct: 159 VFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDP-QPQ 217
Query: 213 QGWGENDRGVSFTFGADVVSKFLHNHDLDLICRAHQVVDDGYEFFAKRQLVTLFSAPNYC 272
G + RGV FG DV +FL ++L+ I R+H+V D+GYE + +T+FSAPNYC
Sbjct: 218 PGRSPSKRGVGCQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYC 277
Query: 273 GEFDNAGGMMSVD 285
+ N G + +
Sbjct: 278 DQMGNKGAFIRIT 290
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 278 bits (713), Expect = 6e-93
Identities = 115/275 (41%), Positives = 169/275 (61%), Gaps = 13/275 (4%)
Query: 29 MSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPDANYLF 88
+SE + + + EI Q+P LL +EAP+ +CGDIHGQ+ DLL+LFE GG P + YLF
Sbjct: 16 LSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYLF 75
Query: 89 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLW 148
LGDYVDRG S+E + L A KI YP+ FLLRGNHEC + + F ECK +Y+ +++
Sbjct: 76 LGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVY 135
Query: 149 KTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIRRIMRPTDVPDTGLLCDLLWSDP 208
+ F+CLP+AA+++++ C HGGLSP+L+ ++ IR++ R + P G +CDLLWSDP
Sbjct: 136 DACMEAFDCLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFGPMCDLLWSDP 195
Query: 209 DKDVQG------WGEND-RGVSFTFGADVVSKFLHNHDLDLICRAHQVVDDGYEFFAKRQ 261
+D + N RG S+ + V +FL ++L I RAH+ D GY + K Q
Sbjct: 196 LEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQ 255
Query: 262 ------LVTLFSAPNYCGEFDNAGGMMSVDETLMC 290
L+T+FSAPNY ++N ++ + +M
Sbjct: 256 TTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMN 290
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 251 bits (644), Expect = 1e-83
Identities = 107/235 (45%), Positives = 136/235 (57%), Gaps = 21/235 (8%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 119
+ GDIHG DLLRL E GFPP+ +FLGDYVDRG S+E I LLLA KI P+N L
Sbjct: 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVIL 60
Query: 120 LRGNHECASINRIYGFYDE---------CKRRYNIKLWKTFTDCFNCLPIAAIID-EKIF 169
LRGNHE +N +YGFYDE ++ LW+ F D F LP+AA+I+ +K+
Sbjct: 61 LRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVL 120
Query: 170 CCHGGLSPDLQMMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAD 229
C HGGLSP L + EQI+ + P+ L DLLWSDP + G+G + RG G D
Sbjct: 121 CVHGGLSPGLPLEEQIK------EEPEDQLPEDLLWSDPLELPGGFGSSRRGG----GPD 170
Query: 230 VVSKFLHNHDLDLICRAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSV 284
V FL + L LI R H V++GYEF L+T+ S NYCG N + +
Sbjct: 171 AVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 186 bits (474), Expect = 7e-57
Identities = 96/263 (36%), Positives = 135/263 (51%), Gaps = 30/263 (11%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFP-PDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFF 118
ICGD+HG+ DL +F G P P+ Y+F GD+VDRGK+S+E + +L A+ + YP
Sbjct: 55 ICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVH 114
Query: 119 LLRGNHECASINRIYGFYDECKRRYNI---KLWKTFTDCFNCLPIAAIIDEKIFCCHGGL 175
L RGNHE +N YGF E +Y + K+ + D F+ LP+A IID KI HGG+
Sbjct: 115 LNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGI 174
Query: 176 S--PDLQMMEQIRR-----IMRP-----------TDVPDTGLL--------CDLLWSDPD 209
S DL ++++I R ++RP + + L D+LWSDP
Sbjct: 175 SDSTDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPK 234
Query: 210 KDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLICRAHQVVDDGYEFFAKRQLVTLFSAP 269
RG FG DV SK L H L L+ R+H+ +GYEF +++T+FSA
Sbjct: 235 AQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSAS 294
Query: 270 NYCGEFDNAGGMMSVDETLMCSF 292
NY E N G + + L F
Sbjct: 295 NYYEEGSNRGAYIKLGPDLTPHF 317
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 153 bits (387), Expect = 2e-43
Identities = 90/265 (33%), Positives = 126/265 (47%), Gaps = 56/265 (21%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFP-PDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFF 118
+ GD+HGQ D+L L E GFP + Y+F GDYVDRG LET LLL++K+ P+ +
Sbjct: 70 VVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVY 129
Query: 119 LLRGNHECASINRIYGFYDECKRRYNIK---LWKTFTDCFNCLPIAAIIDEKIFCCHGGL 175
LLRGNHE +YGF E +Y K +++ CF LP+A+II +++ HGGL
Sbjct: 130 LLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGL 189
Query: 176 --SPDLQM----------------------------MEQIRRIMRPTDVPDTGLLC---D 202
SP L + + RR + D P G D
Sbjct: 190 FRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSV--LDPPGEGSNLIPGD 247
Query: 203 LLWSDPDKDVQGWGEND-RGVSFTFGADVVSKFLHNHDLDLICRAHQ------------V 249
+LWSDP G N RG+ +G D +FL ++L LI R+H+
Sbjct: 248 VLWSDPSLT-PGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAG 306
Query: 250 VDDGYEF---FAKRQLVTLFSAPNY 271
++ GY +L+TLFSAP+Y
Sbjct: 307 MNKGYTVDHDVESGKLITLFSAPDY 331
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 124 bits (312), Expect = 6e-35
Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 10/154 (6%)
Query: 129 INRIYGFYDECKRRYNIKL-WKT---FTDCFNCLPIAAIIDE-KIFCCHGGLSPDL-QMM 182
+ +YGFYDE R+Y +L W + F+ LP+AA+ + K+ C HGGLSP L +++
Sbjct: 3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLL 62
Query: 183 EQIRRIMRPT--DVPDTGLLCDLLWSDPD-KDVQGWGENDRGVSFTFGADVVSKFLHNHD 239
+ I + R +VP G DLLWSDPD D + W RGV G DV + F H
Sbjct: 63 DIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDGG-DVTAVFGIVHT 121
Query: 240 LDLICRAHQVVDDGYEFFAKRQLVTLFSAPNYCG 273
LI RAH + D L+T FSAPNYC
Sbjct: 122 PKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYCY 155
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 122 bits (306), Expect = 9e-34
Identities = 64/223 (28%), Positives = 87/223 (39%), Gaps = 66/223 (29%)
Query: 57 PLKICGDIHGQYTDL---LRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKY 113
+ + GD+HG DL L L E G P LFLGD VDRG SLE + LL A K+K
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 114 PENFFLLRGNHECASINRIYGFYDECKRR-------------------------YNIKLW 148
P +L+RGNH+ S N GFY EC +W
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120
Query: 149 KTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIRRIMRPTDVPDTGLLCDLLWSDP 208
+ F + + L +AA++D KI HG LSP L + I
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDI----------------------- 157
Query: 209 DKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLICRAHQVVD 251
+ FG + + L ++ +DL+ R H V
Sbjct: 158 ---------------YLFGEEALEDLLKDNGVDLVLRGHTHVP 185
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 64.6 bits (158), Expect = 3e-12
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 27/162 (16%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFPPDANYLF-LGDYVDRGKQSLETICLLLAYKIKYPENFF 118
+ GDIHG Y+ L + + GF P + L +GD +DRG +SL CL L + P F
Sbjct: 5 VVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLA--CLEL---LLEP-WFH 58
Query: 119 LLRGNHECASINRI-YGFYDECKRRYNIKLW----------KTFTDCFNCLPIAAII--- 164
+RGNHE +I+ + D + N W + LP+A +
Sbjct: 59 AVRGNHEQMAIDALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETE 118
Query: 165 DEKIFCCHGGLSPDLQMMEQIRRIMRPTDVPDTGLLCDLLWS 206
K+ H P + + + + + LLWS
Sbjct: 119 GGKVGIVHAD-YPSDDWSDGVGAVTLRPEDIEE-----LLWS 154
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 50.0 bits (119), Expect = 1e-07
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 60 ICGDIHGQYTDLLRLFEY---GGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 116
+ DIHG L + E PD L LGD V G E + LA +
Sbjct: 2 VISDIHGNLEALEAVLEAALAAAEKPDF-VLVLGDLVGDGPDPEEVLAAALALLLLLGIP 60
Query: 117 FFLLRGNHE 125
+++ GNH+
Sbjct: 61 VYVVPGNHD 69
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 48.2 bits (116), Expect = 2e-06
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 62 GDIHGQYTDLLRLFEYGGFPPDANYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
GDI G Y +L RL E F P + L +GD V+RG SLE L + ++ +
Sbjct: 7 GDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEV----LRFVKSLGDSAVTV 62
Query: 121 RGNHE 125
GNH+
Sbjct: 63 LGNHD 67
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 47.5 bits (114), Expect = 3e-06
Identities = 37/139 (26%), Positives = 50/139 (35%), Gaps = 41/139 (29%)
Query: 62 GDIHGQYTDLLRLFEYGGFPPDANYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
GDI G Y +L RL E F P + L +GD V+RG SLET+ + + ++ +
Sbjct: 5 GDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTV 60
Query: 121 RGNHE-----CASINRIYGFYDECKRRYNIKLWK---TFTDCFN------------CLPI 160
GNH+ A IK K T D N P+
Sbjct: 61 LGNHDLHLLAVA---------------AGIKKPKKKDTLDDILNAPDRDELLDWLRHQPL 105
Query: 161 AAIIDE-KIFCCHGGLSPD 178
E I H G+ P
Sbjct: 106 LHRDPELGILMVHAGIPPQ 124
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 46.1 bits (110), Expect = 7e-06
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 60 ICGDIHGQYTDLLRLFEYGGF--------PPDANYLFLGDYVDRGKQSLETICLLLAYKI 111
GDIHG L+ L G+ P+ +FLGD +DRG + E L + +
Sbjct: 3 FIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIREL--LEIVKSM 60
Query: 112 KYPENFFLLRGNHE 125
+ + GNHE
Sbjct: 61 VDAGHALAVMGNHE 74
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 44.5 bits (106), Expect = 2e-05
Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 40/146 (27%)
Query: 62 GDIHGQYTDLLRLFEYGGFPPDANY---------LFLGDYVDRGKQSLETICLLLAYKIK 112
GD+HG + + G D+N + LGD DRG +E + LL YK++
Sbjct: 4 GDLHGDLDAFREILKGAGVI-DSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLL--YKLE 60
Query: 113 YPE------NFFLLRGNHECASINRIYG------------FYDECKRRYNIKLWKTFTDC 154
E L GNHE + + G F RR +L+ +
Sbjct: 61 -QEAAKAGGKVHFLLGNHE---LMNLCGDFRYVHPKYFNEFGGLAMRRR--ELFSPGGEL 114
Query: 155 FNCL---PIAAIIDEKIFCCHGGLSP 177
L P+ +++ +F HGGL P
Sbjct: 115 GRWLRSKPVIVKVNDTLF-VHGGLGP 139
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 45.2 bits (107), Expect = 2e-05
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 60 IC-GDIHGQYTDLLRLFE--YGGFPPD----ANYLFLGDYVDRGKQSLETICLLLAYKIK 112
IC GDIHG + L L+ P A +FLGDY DRG ++ + I L++ K
Sbjct: 5 ICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEK 64
Query: 113 YP-ENFFLLRGNHECA 127
+P + L GNH+ A
Sbjct: 65 HPKQRHVFLCGNHDFA 80
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 44.2 bits (104), Expect = 3e-05
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 63 DIHGQYTDLLRLFE--YGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
DIHG+Y LL + + P+ +FLGDYVDRGK+S + + + +N L
Sbjct: 8 DIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSN-DDNVVTL 66
Query: 121 RGNHE------CASINRIYGFYD-ECKRRYNIKLWKTF 151
GNH+ +++R+ YD E RY I+ ++
Sbjct: 67 LGNHDDEFYNIMENVDRL-SIYDIEWLSRYCIETLNSY 103
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 43.3 bits (102), Expect = 5e-05
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 62 GDIHGQYTDLLRLFEYGGFPPDANYLF-LGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
GDIHG+Y L F P+ + L +GD +DRG +SL + LL P F +
Sbjct: 21 GDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLL-----NQPW-FISV 74
Query: 121 RGNHECASIN 130
+GNHE +++
Sbjct: 75 KGNHEAMALD 84
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 43.2 bits (102), Expect = 5e-05
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFPPDANYLF-LGDYVDRGKQSLETICLLLAYKIKYPENFF 118
+ GDIHG + L+R + F P + L +GD +DRG QSL CL L +
Sbjct: 21 LVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR--CLQLLEE----HWVR 74
Query: 119 LLRGNHE 125
+RGNHE
Sbjct: 75 AVRGNHE 81
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 43.0 bits (102), Expect = 8e-05
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 57 PLKICGDIHGQYTDLLRLFE---------YGGFPPDANYL-FLGDYVDRGKQSLETICLL 106
P I GD+HG Y +L L E P+ F+GD VDRG S E + L+
Sbjct: 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLV 61
Query: 107 L-AYKIKYPENFFLLRGNHE 125
+ + GNH+
Sbjct: 62 MSMVAAGAA---LCVPGNHD 78
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 57 PLKICGDIHGQYTDLLRLFE---Y------GGFPPDANY------LFLGDYVDRGKQSLE 101
P I GD+HG +L L E Y GG P D + +F+GD VDRG S
Sbjct: 181 PFDIIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPDSPG 240
Query: 102 TICLLLAYKIKYPENFFLLRGNHE 125
L L + + GNH+
Sbjct: 241 V--LRLVMGMVAAGTALCVPGNHD 262
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 39.7 bits (93), Expect = 0.001
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 21/89 (23%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFP--------PDANYL-FLGDYVDRGKQSLETI---CLLL 107
I GDIHG Y + L E G+ PD L F+GD DRG SL I L+
Sbjct: 5 IIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV 64
Query: 108 AYKIKYPENFFLLRGNHECASINRIYGFY 136
K Y + GNH C N++Y F+
Sbjct: 65 EKKAAY-----YVPGNH-C---NKLYRFF 84
>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
regulatory metabolite of stress conditions. It is
hydrolyzed to two ADP by this enzyme. Alternate names
include diadenosine-tetraphosphatase and Ap4A hydrolase
[Cellular processes, Adaptations to atypical
conditions].
Length = 279
Score = 38.7 bits (90), Expect = 0.002
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 29/202 (14%)
Query: 62 GDIHGQYTDLLRLFEYGGFPPDANYLFL-GDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
GD+HG Y +L L E F P + L+L GD V RG SLE +L Y + L+
Sbjct: 7 GDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE----VLRYVKSLGDAVRLV 62
Query: 121 RGNHECASINRIYGFY-----DECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFC-CHGG 174
GNH+ + G D + P+ +EK H G
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAG 122
Query: 175 LSP--DLQMMEQIRR----IMRPTDVPDTGLLCDLLWSD-PDKDVQGWGENDRGVS---F 224
++P DLQ ++ R ++ P D ++ D P++ W +G++ F
Sbjct: 123 ITPQWDLQTAKECARDVEAVLSSDSYP---FFLDAMYGDMPNR----WSPELQGLARLRF 175
Query: 225 TFGADVVSKFLH-NHDLDLICR 245
A +F N LD+ +
Sbjct: 176 IINAFTRMRFCFPNGQLDMYSK 197
>gnl|CDD|163640 cd07397, MPP_DevT, Myxococcus xanthus DevT and related proteins,
metallophosphatase domain. DevT is a component in the
C-signal response pathway in Myxococcus xanthus that
stimulates the developmentally regulated expression of
the FruA response regulator protein and is required for
methylation of FrzCD during fruiting body formation.
DevT mutants having an in-frame deletion in the devT
gene, display delayed aggregation and a cell autonomous
sporulation defect. DevT belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 238
Score = 30.4 bits (69), Expect = 1.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 17/73 (23%)
Query: 58 LKICGDIHGQYT----DLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKY 113
+ I GD+HGQ+ L L + PD LF+GD+ G +S++ + + +
Sbjct: 3 IAIVGDVHGQWDLEDIKALHLLQ-----PDL-VLFVGDF---GNESVQLVRAI--SSLPL 51
Query: 114 PENFFLLRGNHEC 126
P+ L GNH+
Sbjct: 52 PKAVIL--GNHDA 62
>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase. Glucose
dehydrogenase (GlcDH), a member of the medium chain
dehydrogenase/zinc-dependent alcohol dehydrogenase-like
family, catalyzes the NADP(+)-dependent oxidation of
glucose to gluconate, the first step in the
Entner-Doudoroff pathway, an alternative to or
substitute for glycolysis or the pentose phosphate
pathway. The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class
I mammalian ADH. MDRs display a broad range of
activities and are distinguished from the smaller short
chain dehydrogenases (~ 250 amino acids vs. the ~ 350
amino acids of the MDR). The MDR proteins have 2
domains: a C-terminal NAD(P) binding-Rossman fold
domain of a beta-alpha form and an N-terminal catalytic
domain with distant homology to GroES. The MDR group
contains a host of activities, including the founding
alcohol dehydrogenase (ADH), quinone reductase,
sorbitol dehydrogenase, formaldehyde dehydrogenase,
butanediol DH, ketose reductase, cinnamyl reductase,
and numerous others. The zinc-dependent alcohol
dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent
interconversion of alcohols to aldehydes or ketones.
Active site zinc has a catalytic role, while structural
zinc aids in stability.
Length = 355
Score = 29.1 bits (66), Expect = 3.0
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 60 ICGDIHGQYTDL-LRLFEYGGFPPDANYLFLG 90
+CG TD + EYG PP ++L LG
Sbjct: 37 VCG------TDREIVAGEYGTAPPGEDFLVLG 62
>gnl|CDD|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated.
Length = 971
Score = 29.0 bits (65), Expect = 4.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 107 LAY-KIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWK 149
+AY K YP F + +H AS +++ + +E K NI + K
Sbjct: 689 MAYLKHYYPLEFLSILLSHTSASKDKLLSYLNEAKEF-NISIKK 731
>gnl|CDD|119340 cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze
either P-C or C-C bond formation/cleavage. Known members
are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate
hydrolase (PPH), carboxyPEP mutase (CPEP mutase),
oxaloacetate hydrolase (OAH), isocitrate lyase (ICL),
and 2-methylisocitrate lyase (MICL). Isocitrate lyase
(ICL) catalyzes the conversion of isocitrate to
succinate and glyoxylate, the first committed step in
the glyoxylate pathway. This carbon-conserving pathway
is present in most prokaryotes, lower eukaryotes and
plants, but has not been observed in vertebrates. PEP
mutase (PEPM) turns phosphoenolpyruvate (PEP) into
phosphonopyruvate (P-pyr), an important intermediate in
the formation of organophosphonates, which function as
antibiotics or play a role in pathogenesis or signaling.
P-pyr can be hydrolyzed by phosphonopyruvate hydrolase
(PPH) to from pyruvate and phosphate. Oxaloacetate
acetylhydrolase (OAH) catalyzes the hydrolytic cleavage
of oxaloacetate to form acetate and oxalate, an
important pathway to produce oxalate in filamentous
fungi. 2-methylisocitrate lyase (MICL) cleaves
2-methylisocitrate to pyruvate and succinate, part of
the methylcitrate cycle for the alpha-oxidation of
propionate.
Length = 243
Score = 27.8 bits (63), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 173 GGLSPDLQMMEQIRRIMRPTDVP-----DTG 198
GGL +++ +RRI R D+P DTG
Sbjct: 49 GGLLTLDEVLAAVRRIARAVDLPVIADADTG 79
>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 27.7 bits (62), Expect = 6.7
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 ELNVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCL-KSREIF 45
+ + L +RL + RG K ++ EAE+ + L ++ E F
Sbjct: 90 RADPEVLYERL-KGRGYSEEKILENVEAEILDVILIEAVERF 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.142 0.452
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,017,810
Number of extensions: 1648372
Number of successful extensions: 1137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 40
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)