RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16875
(324 letters)
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 637 bits (1644), Expect = 0.0
Identities = 279/329 (84%), Positives = 295/329 (89%), Gaps = 5/329 (1%)
Query: 1 MVDFE-LNVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLK 59
M D E LN+D +I RLLE +G RPGK VQ++E E+RGLCLKSREIFL QPILLELEAPLK
Sbjct: 1 MSDSEKLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLK 60
Query: 60 ICGDIHGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 119
ICGDIHGQY DLLRLFEYGGFPP++NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL
Sbjct: 61 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
Query: 120 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDL 179
LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAI+DEKIFCCHGGLSPDL
Sbjct: 121 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDL 180
Query: 180 QMMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHD 239
Q MEQIRRIMRPTDVPD GLLCDLLWSDPDKDVQGWGENDRGVSFTFGA+VV+KFLH HD
Sbjct: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHD 240
Query: 240 LDLICRAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
LDLICRAHQVV+DGYEFFAKRQLVTLFSAPNYCGEFDNAG MMSVDETLMCSFQILKP++
Sbjct: 241 LDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 300
Query: 300 KKA----KYQYTGNSSRPSTPQHNPPKKK 324
K ++ RP TP N K K
Sbjct: 301 KNKGKYGQFSGLNPGGRPITPPRNSAKAK 329
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 624 bits (1612), Expect = 0.0
Identities = 268/295 (90%), Positives = 282/295 (95%)
Query: 5 ELNVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDI 64
LN+D +I RLLE +G RPGK VQ++E E+RGLCLKSREIFL QPILLELEAPLKICGDI
Sbjct: 5 SLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDI 64
Query: 65 HGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 124
HGQY DLLRLFEYGGFPP++NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH
Sbjct: 65 HGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 124
Query: 125 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQ 184
ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAI+DEKIFCCHGGLSPDLQ MEQ
Sbjct: 125 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQ 184
Query: 185 IRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLIC 244
IRRIMRPTDVPD GLLCDLLWSDPDKDVQGWGENDRGVSFTFGA+VV+KFLH HDLDLIC
Sbjct: 185 IRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLIC 244
Query: 245 RAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
RAHQVV+DGYEFFAKRQLVTLFSAPNYCGEFDNAG MMSVDETLMCSFQILKP++
Sbjct: 245 RAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 299
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 593 bits (1532), Expect = 0.0
Identities = 142/319 (44%), Positives = 200/319 (62%), Gaps = 19/319 (5%)
Query: 4 FELNVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGD 63
F +D I++L E + Q+SE++V+ LC K++EI ++ + E+ P+ +CGD
Sbjct: 6 FTKELDQWIEQLNECK--------QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGD 57
Query: 64 IHGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGN 123
+HGQ+ DL+ LF GG PD NYLF+GDYVDRG S+ET+ LL+A K++Y E +LRGN
Sbjct: 58 VHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGN 117
Query: 124 HECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMM 182
HE I ++YGFYDEC R+Y N +WK FTD F+ LP+ A++D +IFC HGGLSP + +
Sbjct: 118 HESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTL 177
Query: 183 EQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDL 242
+ IR + R +VP G +CDLLWSDPD D GWG + RG +TFG D+ F H + L L
Sbjct: 178 DHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTL 236
Query: 243 ICRAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKA 302
+ RAHQ+V +GY + R +VT+FSAPNYC N +M +D+TL SF P+ ++
Sbjct: 237 VSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRG 296
Query: 303 KYQYTGNSSRPSTPQHNPP 321
P + P
Sbjct: 297 ---------EPHVTRRTPD 306
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 539 bits (1390), Expect = 0.0
Identities = 114/300 (38%), Positives = 174/300 (58%), Gaps = 21/300 (7%)
Query: 7 NVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIHG 66
VD L L+ K ++ E+ + + I Q+ LL+++AP+ +CGDIHG
Sbjct: 29 RVDILKAHLM--------KEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHG 80
Query: 67 QYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 126
Q+ DL++LFE GG P + YLFLGDYVDRG S+E + L A KI YP+ FLLRGNHEC
Sbjct: 81 QFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHEC 140
Query: 127 ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIR 186
+ + F ECK +Y+ +++ D F+CLP+AA+++++ C HGGLSP++ ++ IR
Sbjct: 141 RHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIR 200
Query: 187 RIMRPTDVPDTGLLCDLLWSDPDKDVQGWGEND-------RGVSFTFGADVVSKFLHNHD 239
++ R + P G +CD+LWSDP +D + RG S+ + V +FL +++
Sbjct: 201 KLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNN 260
Query: 240 LDLICRAHQVVDDGYEFFAKRQ------LVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQ 293
L I RAH+ D GY + K Q L+T+FSAPNY ++N ++ + +M Q
Sbjct: 261 LLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQ 320
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 524 bits (1352), Expect = 0.0
Identities = 105/314 (33%), Positives = 156/314 (49%), Gaps = 12/314 (3%)
Query: 2 VDFELNVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELE------ 55
+ I +++ K + + V + + +F Q+P ++ELE
Sbjct: 7 AKIKNMSQEFISKMVNDL---FLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPD 63
Query: 56 APLKICGDIHGQYTDLLRLFE-YGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYP 114
+ +CGD HGQ+ D+L LF +G P YLF GD+VDRG S E L KI +P
Sbjct: 64 VKISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHP 123
Query: 115 ENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGG 174
NFFL RGNHE ++N+IYGF DECK +Y+ +++ F F LP+A +I+ HGG
Sbjct: 124 NNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHGG 183
Query: 175 L-SPDLQMMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSK 233
L S + + I R P G +LLW+DP + G G + RG+ FG D+ +
Sbjct: 184 LPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQ-EANGMGPSQRGLGHAFGPDITDR 242
Query: 234 FLHNHDLDLICRAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQ 293
FL N+ L I R+H++ G +F K +L+T+FSAPNYC N GG++ V
Sbjct: 243 FLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQA 302
Query: 294 ILKPSEKKAKYQYT 307
+ +
Sbjct: 303 GRNDDQNLIIETFE 316
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 529 bits (1364), Expect = 0.0
Identities = 114/301 (37%), Positives = 174/301 (57%), Gaps = 21/301 (6%)
Query: 7 NVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICGDIHG 66
VD L L+ K ++ E+ + + I Q+ LL+++AP+ +CGDIHG
Sbjct: 42 RVDILKAHLM--------KEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHG 93
Query: 67 QYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 126
Q+ DL++LFE GG P + YLFLGDYVDRG S+E + L A KI YP+ FLLRGNHEC
Sbjct: 94 QFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHEC 153
Query: 127 ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIR 186
+ + F ECK +Y+ +++ D F+CLP+AA+++++ C HGGLSP++ ++ IR
Sbjct: 154 RHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIR 213
Query: 187 RIMRPTDVPDTGLLCDLLWSDPDKDVQGWGEND-------RGVSFTFGADVVSKFLHNHD 239
++ R + P G +CD+LWSDP +D + RG S+ + V +FL +++
Sbjct: 214 KLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNN 273
Query: 240 LDLICRAHQVVDDGYEFFAKRQ------LVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQ 293
L I RAH+ D GY + K Q L+T+FSAPNY ++N ++ + +M Q
Sbjct: 274 LLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQ 333
Query: 294 I 294
Sbjct: 334 F 334
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 517 bits (1335), Expect = 0.0
Identities = 111/300 (37%), Positives = 164/300 (54%), Gaps = 16/300 (5%)
Query: 7 NVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELE----APLKICG 62
+ L+Q + K ++ + ++ +E+ + L+E + +CG
Sbjct: 15 FMKELMQWY------KDQK--KLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCG 66
Query: 63 DIHGQYTDLLRLFEYGGFPPDAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 121
D HGQ+ DLL +FE G P + N Y+F GD+VDRG S+E I L +K+ YP++F LLR
Sbjct: 67 DTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLR 126
Query: 122 GNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGL-SPDLQ 180
GNHE ++N+IYGF E K +Y ++++ F++ F LP+A I+ K+ HGGL S D
Sbjct: 127 GNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGV 186
Query: 181 MMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDL 240
++ IR+I R PD+G +CDLLWSDP G + RGVS FG DV FL ++L
Sbjct: 187 TLDDIRKIERNRQPPDSGPMCDLLWSDPQ-PQNGRSISKRGVSCQFGPDVTKAFLEENNL 245
Query: 241 DLICRAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVD-ETLMCSFQILKPSE 299
D I R+H+V +GYE + VT+FSAPNYC + N + + L F
Sbjct: 246 DYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 305
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 509 bits (1314), Expect = 0.0
Identities = 111/300 (37%), Positives = 164/300 (54%), Gaps = 16/300 (5%)
Query: 7 NVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELE----APLKICG 62
+ L+Q + K ++ + ++ +E+ + L+E + +CG
Sbjct: 168 FMKELMQWY------KDQK--KLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCG 219
Query: 63 DIHGQYTDLLRLFEYGGFPPDAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 121
D HGQ+ DLL +FE G P + N Y+F GD+VDRG S+E I L +K+ YP++F LLR
Sbjct: 220 DTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLR 279
Query: 122 GNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGL-SPDLQ 180
GNHE ++N+IYGF E K +Y ++++ F++ F LP+A I+ K+ HGGL S D
Sbjct: 280 GNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGV 339
Query: 181 MMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDL 240
++ IR+I R PD+G +CDLLWSDP G + RGVS FG DV FL ++L
Sbjct: 340 TLDDIRKIERNRQPPDSGPMCDLLWSDPQ-PQNGRSISKRGVSCQFGPDVTKAFLEENNL 398
Query: 241 DLICRAHQVVDDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVD-ETLMCSFQILKPSE 299
D I R+H+V +GYE + VT+FSAPNYC + N + + L F
Sbjct: 399 DYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 458
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 111 bits (278), Expect = 2e-28
Identities = 48/245 (19%), Positives = 78/245 (31%), Gaps = 26/245 (10%)
Query: 41 SREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPDAN--------YLFLGDY 92
S EI P + D+HGQY LL L + + GD
Sbjct: 56 SSEIKQIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDI 115
Query: 93 VDRGKQSLETICLLLAYKIKYPE---NFFLLRGNHECASI-------NRIYGFYDECKRR 142
DRG Q E + + + + LL GNHE + ++ Y R
Sbjct: 116 FDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINR 175
Query: 143 YNIKLWKTFTDCFNCL---PIAAIIDEKIFCCHGGLSPDLQMMEQIRRIMRPTDVPDTGL 199
KL+ T+ L I++ ++ HGG+S + E +
Sbjct: 176 PYNKLYSADTEIGQWLRSKNTIIKINDVLY-MHGGISSEWISRELTLDKANALYRANVDA 234
Query: 200 LCDLLWSDPDKDVQGWGEN---DRGVSF-TFGADVVSKFLHNHDLDLICRAHQVVDDGYE 255
L +D + +G RG TF + L + +++ I H +
Sbjct: 235 SKKSLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHTSQERVLG 294
Query: 256 FFAKR 260
F +
Sbjct: 295 LFHNK 299
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 76.6 bits (189), Expect = 2e-16
Identities = 39/226 (17%), Positives = 71/226 (31%), Gaps = 35/226 (15%)
Query: 43 EIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPDANYL-FLGDYVDRGKQSLE 101
+ + L + + I GDIHG L L F ++ L +GD V++G S
Sbjct: 6 QGYANVVTLPNVTGRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFG 65
Query: 102 TICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFT--------- 152
+ LL + + GNH+ ++ + ++ +K +
Sbjct: 66 VVRLLKRL------GAYSVLGNHD----AKLLKLVKKLGKKECLKGRDAKSSLAPLAQSI 115
Query: 153 -----DCFNCLPIAAIIDE-KIFCCHGGLSPDLQMMEQ-------IRRIMRPTDVPDTGL 199
+ LP I + H GL P + Q +R ++ G+
Sbjct: 116 PTDVETYLSQLPHIIRIPAHNVMVAHAGLHPQRPVDRQYEDEVTTMRNLIEKEQEATGGV 175
Query: 200 LCDLLWSDPDKDVQGWGENDRG-VSFTFGADVVSKFLHNHDLDLIC 244
+ + + W RG + FG D + I
Sbjct: 176 TLT-ATEETNDGGKPWASMWRGPETVVFGHDARRGLQEQYKPLAIG 220
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 68.3 bits (166), Expect = 2e-13
Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 11/168 (6%)
Query: 62 GDIHGQYTDLLRLFEYGGFPPDANYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
GD+HG Y +L+ L F P + L GD V RG SL+ + + + ++ L+
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLG----DSVRLV 62
Query: 121 RGNHECASINRIYGFYDECKRR-----YNIKLWKTFTDCFNCLPIAAIID-EKIFCCHGG 174
GNH+ + G + + P+ I + +K+ H G
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAG 122
Query: 175 LSPDLQMMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGV 222
++P + V + L + W RG+
Sbjct: 123 ITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGL 170
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 67.1 bits (164), Expect = 3e-13
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFPPDANYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFF 118
+ GD+HG YT+L+ + GF + L +GD VDRG +++E + L+ F
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFP------WFR 70
Query: 119 LLRGNHE 125
+RGNHE
Sbjct: 71 AVRGNHE 77
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 45.5 bits (107), Expect = 7e-06
Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 13/125 (10%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 119
I D+H L + G D LGD V G + E + L+
Sbjct: 8 IISDVHANLVALEAVLSDAG-RVDD-IWSLGDIVGYGPRPRECVELVRVLAPNIS----- 60
Query: 120 LRGNHECASINRIYGF-YDECKRRYNIKLWKTFTD----CFNCLPIAAIIDEKIFCCHGG 174
+ GNH+ A I R+ ++ R + LP +ID HG
Sbjct: 61 VIGNHDWACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLP-NRMIDGDWTVVHGS 119
Query: 175 LSPDL 179
+
Sbjct: 120 PRHPI 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 1e-05
Identities = 35/249 (14%), Positives = 73/249 (29%), Gaps = 84/249 (33%)
Query: 29 MSEAEVRGLCLKSRE---IFLQQPILLELEAPLKICGDIH----GQYTDLLRLFEYGGFP 81
+++ L K + I + I LEL+ L+ +H Y ++ + F+
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLI 465
Query: 82 PDA--NYLFLGDYVDRGKQSLETICLLLAY---KIKYPENFFLLRGNHECASINRIY--- 133
P Y + + + + I++PE L R ++
Sbjct: 466 PPYLDQYFY--SH--------------IGHHLKNIEHPERMTLFR---------MVFLDF 500
Query: 134 GFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIRRIMRPTD 193
F ++ K R++ W G + LQ ++ + + D
Sbjct: 501 RFLEQ-KIRHDSTAW---------------------NASGSILNTLQQLKFYKPYICDND 538
Query: 194 VPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLHNHDLDLICRAHQVVDDG 253
L+ +L F + + + DL+ A D+
Sbjct: 539 PKYERLVNAIL------------------DFLPKIE--ENLICSKYTDLLRIALMAEDEA 578
Query: 254 YEFFAKRQL 262
A +Q+
Sbjct: 579 IFEEAHKQV 587
Score = 42.1 bits (98), Expect = 2e-04
Identities = 56/351 (15%), Positives = 97/351 (27%), Gaps = 81/351 (23%)
Query: 3 DFELNVDYLIQRLLEARGCRPGKTVQMSEAEVRGLCLKSREIFLQQPILLELEAPLKICG 62
D L LL + + VQ EV L+ FL PI E P +
Sbjct: 59 DAVSGTLRLFWTLLS----KQEEMVQKFVEEV----LRINYKFLMSPIKTEQRQPSMMT- 109
Query: 63 DIHGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRG 122
++ + D RL+ + N +F V R + L+ LL + P L+ G
Sbjct: 110 RMYIEQRD--RLY-------NDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDG 157
Query: 123 NHEC------ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLS 176
+ Y +CK + I W NC +++ +
Sbjct: 158 VLGSGKTWVALDVCLSYKV--QCKMDFKI-FWLNLK---NCNSPETVLEMLQKLLYQIDP 211
Query: 177 PDLQMMEQIRRIMRPTDVPDTGLLCDLLWSDPDK-------DVQGWGENDRGV--SFTFG 227
+ I L LL S P + +V + +F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNV--Q---NAKAWNAFNLS 265
Query: 228 AD--VVSKFLHNHD-LDLICRAHQVVDDGYEFFAKRQLVTLFS----------------- 267
+ ++F D L H +D ++ +L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 268 AP---NYCGEF--DNAG--------GMMSVDETLMCSFQILKPSEKKAKYQ 305
P + E D + + S +L+P+E + +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 43.9 bits (103), Expect = 3e-05
Identities = 24/146 (16%), Positives = 39/146 (26%), Gaps = 22/146 (15%)
Query: 60 ICGDIHGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 119
+ DIHG T L + Y LGD + G + LL I
Sbjct: 16 LLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLPIT-----AR 70
Query: 120 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAII--------------D 165
+ GN E + + + R L + + + I D
Sbjct: 71 VLGNWEDS-LWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGD 129
Query: 166 EKIFCCHGGLSPDLQMMEQIRRIMRP 191
+ H PD ++ +
Sbjct: 130 LTVGISHH--LPDKNWGRELIHTGKQ 153
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 41.3 bits (96), Expect = 2e-04
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 62 GDIHGQYTDLLRLFE------YGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPE 115
+I G L G+ + Y LG+ V E I ++ K E
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEK-YYILGNIVGLFPYPKEVIEVIKDLTKK--E 64
Query: 116 NFFLLRGNHECASINRIYGFYDE 138
N ++RG ++ D
Sbjct: 65 NVKIIRGKYDQIIAMSDPHATDP 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 9e-04
Identities = 63/392 (16%), Positives = 104/392 (26%), Gaps = 140/392 (35%)
Query: 48 QPILLE---LEAPLKICGDIHGQYTDLLRLFE------YGGFPPD----------ANYL- 87
+P+ L LE L + + L F GF D +L
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 88 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGN--HECAS---------------IN 130
++ V+ K L L + EN + L GN H A+ +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLC--LTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 131 RIYGFYDEC-------KRRYNIKLWKTFTDCFNCLPIAAIIDE-KIFCCHGGLSPDLQMM 182
+ Y ++ N L++ A ++ GG
Sbjct: 124 KNY--ITARIMAKRPFDKKSNSALFR-----------AVGEGNAQLVAIFGGQGNTDDYF 170
Query: 183 EQIRRIMR--PTDVPD-----TGLLCDLLWSDPDK--------DVQGWGEN-----DRG- 221
E++R + + V D L +L+ + D ++ W EN D+
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 222 -----VSF------TFGADVVSKFLHNHDLD----------LICRAHQVV--------DD 252
+S VV + +V D
Sbjct: 231 LLSIPISCPLIGVIQLAHYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 253 GYEFF--AKRQLVTLF--------SAPNYCGE-------FDNAGGMMSVDETLMCSFQIL 295
FF ++ + LF + PN +N G+ S M S L
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS----PMLSISNL 344
Query: 296 KPSEKKAKYQYTGNSSRPSTPQ-----HNPPK 322
+ + T NS P+ Q N K
Sbjct: 345 TQEQVQDYVNKT-NSHLPAGKQVEISLVNGAK 375
Score = 33.9 bits (77), Expect = 0.077
Identities = 48/278 (17%), Positives = 88/278 (31%), Gaps = 91/278 (32%)
Query: 44 IFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETI 103
I L EL + Q ++L E PD +YL L + S I
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPI-----SCPLI 241
Query: 104 CL--LLAYKI------KYPENFFLLRGNHECASINRIYG---------------FYDECK 140
+ L Y + P ++ + G F+ +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELR----SYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 141 RRYNIKLW------KTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQM-------MEQIRR 187
+ + + + + + LP +I+++ + G SP M EQ++
Sbjct: 298 KAITVLFFIGVRCYEAYPNT--SLP-PSILEDSLENNEGVPSP---MLSISNLTQEQVQD 351
Query: 188 IMRPTD--VPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAD--VVS---KFLHNHDL 240
+ T+ +P K V+ +S GA VVS + L+ L
Sbjct: 352 YVNKTNSHLP------------AGKQVE--------ISLVNGAKNLVVSGPPQSLYG--L 389
Query: 241 DLICRAHQVVDDGYE----FFAKRQLV--TLF---SAP 269
+L R + G + F++R+L F ++P
Sbjct: 390 NLTLRKAK-APSGLDQSRIPFSERKLKFSNRFLPVASP 426
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 35.5 bits (81), Expect = 0.014
Identities = 7/85 (8%), Positives = 22/85 (25%), Gaps = 3/85 (3%)
Query: 62 GDIHGQYTDLLRLFE-YGGFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
+ G L + + DA +G+ + + +S + + +
Sbjct: 12 SNPMGDLEALEKFVKLAPDTGADA-IALIGNLMPKAAKSRDYAAFFRILS-EAHLPTAYV 69
Query: 121 RGNHECASINRIYGFYDECKRRYNI 145
G + + + +
Sbjct: 70 PGPQDAPIWEYLREAANVELVHPEM 94
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel,
structural genomics, joint for structural genomics,
JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Length = 301
Score = 29.6 bits (66), Expect = 1.4
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 4/120 (3%)
Query: 87 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIK 146
+ D +++ ++ E C L ++ + + + K + K
Sbjct: 79 YIIRDGIEKASEAFEKHCQYLK---AINAPVAVVSEQTYTIQRSDTANIFKD-KPYFTDK 134
Query: 147 LWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQMMEQIRRIMRPTDVPDTGLLCDLLWS 206
W N A H + +Q E+ R+M TD GLL D
Sbjct: 135 EWDEVCKGLNHYGEIAAKYGLKVAYHHHMGTGIQTKEETDRLMANTDPKLVGLLYDTGHI 194
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate
biosynthesis pathway, isomera; 1.69A {Mytilus edulis}
SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Length = 295
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 11/33 (33%)
Query: 177 PDL------QMMEQIRRIMRPTDVP-----DTG 198
D Q++E + + +DVP DTG
Sbjct: 57 RDSNEASWTQVVEVLEFMSDASDVPILLDADTG 89
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP
mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A
{Variovorax SP} PDB: 2dua_A* 2hrw_A
Length = 290
Score = 28.8 bits (65), Expect = 2.6
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 11/33 (33%)
Query: 177 PDL------QMMEQIRRIMRPTDVP-----DTG 198
PD +E +R I +P DTG
Sbjct: 53 PDANILSMSTHLEMMRAIASTVSIPLIADIDTG 85
>2qiw_A PEP phosphonomutase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc
13032}
Length = 255
Score = 28.4 bits (64), Expect = 2.8
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 173 GGLSPDLQMMEQIRRIMRPTDVP-----DTG 198
G M +++I +P ++G
Sbjct: 60 GENMNFADYMAVVKKITSAVSIPVSVDVESG 90
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic,
ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase;
HET: AKG; 1.65A {Deinococcus ficus}
Length = 275
Score = 28.0 bits (63), Expect = 3.7
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 173 GGLSPDLQMMEQIRRIMRPTDVP-----DTG 198
G +M ++ I+R +P + G
Sbjct: 56 GQTLTRDEMGREVEAIVRAVAIPVNADIEAG 86
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix
swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Length = 287
Score = 28.0 bits (63), Expect = 3.9
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 11/33 (33%)
Query: 177 PDL------QMMEQIRRIMRPTDVP-----DTG 198
PD + +EQ RI R +P D G
Sbjct: 60 PDFALITLSEFVEQATRIGRVARLPVIADADHG 92
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor
complex, isocitrate lyase superfamily; HET: ICT; 1.60A
{Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A
1o5q_A
Length = 295
Score = 27.6 bits (62), Expect = 4.9
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 11/33 (33%)
Query: 177 PDL------QMMEQIRRIMRPTDVP-----DTG 198
PDL ++ IRRI +P D G
Sbjct: 56 PDLGISTLDDVLTDIRRITDVCSLPLLVDADIG 88
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 27.5 bits (61), Expect = 4.9
Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 10/63 (15%)
Query: 164 IDEKIFCCHGGLSPDLQMMEQIRRI----------MRPTDVPDTGLLCDLLWSDPDKDVQ 213
DE G + + ++ + + T L ++ + +Q
Sbjct: 37 TDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQ 96
Query: 214 GWG 216
G
Sbjct: 97 GLA 99
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for
infectious disease, ssgcid; 2.90A {Burkholderia
pseudomallei 1655}
Length = 298
Score = 27.7 bits (62), Expect = 5.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 11/33 (33%)
Query: 177 PDL------QMMEQIRRIMRPTDVP-----DTG 198
PDL ++ RI T++P DTG
Sbjct: 61 PDLGISTMDDVLVDANRITNATNLPLLVDIDTG 93
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center
for structural GENO infectious diseases, csgid; 2.00A
{Bacillus anthracis str} PDB: 3kz2_A
Length = 305
Score = 27.7 bits (62), Expect = 5.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 11/33 (33%)
Query: 177 PDL------QMMEQIRRIMRPTDVP-----DTG 198
PDL ++ E+ R ++R TD+P DTG
Sbjct: 67 PDLGIVTSTEVAERARDLVRATDLPVLVDIDTG 99
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 27.2 bits (61), Expect = 7.4
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 164 IDEKIFCCHGGLSPDLQMMEQ-IRRIMR 190
I KI+CC G++ D +M + M
Sbjct: 37 IAPKIYCCGAGVAADTEMTTRMAASKME 64
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 26.8 bits (60), Expect = 8.2
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 164 IDEKIFCCHGGLSPDLQMMEQI 185
I +++ G D Q + +I
Sbjct: 37 IADRMAMTTAGSVGDAQFLARI 58
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 27.0 bits (59), Expect = 8.2
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 57 PLKI--CGDIHGQYTDLLRLFEYG-GFPPDANYLFLGDYVDRGKQSLETICLLLAYKIKY 113
P K+ + ++ L +L PD + +G+ + E LA +
Sbjct: 5 PRKVLAIKNFKERFDLLPKLKGVIAEKQPDI-LVVVGNILKNEALEKEYERAHLARREPN 63
Query: 114 PENFFLLRGNHECASINRIYGFYDEC 139
+ ++ ++++ + E
Sbjct: 64 RK-VIHENEHYIIETLDKFFREIGEL 88
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 26.9 bits (60), Expect = 8.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 164 IDEKIFCCHGGLSPDLQMMEQI 185
I KI+C G + D + + Q+
Sbjct: 66 ISPKIWCAGAGTAADTEAVTQL 87
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 26.8 bits (60), Expect = 9.4
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 164 IDEKIFCCHGGLSPDLQMMEQI 185
+ ++IFC G + D Q + +
Sbjct: 37 LHQRIFCALSGSAADAQAIADM 58
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 26.4 bits (59), Expect = 9.8
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 164 IDEKIFCCHGGLSPDLQMMEQI 185
I+ + G + D Q E
Sbjct: 37 INPFLLGTMAGGAADCQFWETW 58
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 26.5 bits (59), Expect = 9.9
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 130 NRIYGFYDECKRRYNIKLWKTFTDCFNC---LPIAAIIDEKIFCCHGGLSPDLQMMEQIR 186
N ++ +D+ + K DC+ C LP A D C G+ M+E I
Sbjct: 62 NELFARFDKLAAENHCLRIKILGDCYYCVSGLPEAR-ADHAHCCVEMGMD----MIEAIS 116
Query: 187 RIMRPTDVP 195
+ T V
Sbjct: 117 LVREMTGVN 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.452
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,233,541
Number of extensions: 317678
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 44
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)