BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16876
         (1124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
           Prestin (Anion Transporter Slc26a5)
          Length = 143

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 882 LGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKIS-KLSLSSEPYPKQ 940
           LG+L D+++Y++ D YE   ++PGI I +I   + + N D     +  K  ++       
Sbjct: 7   LGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHT 66

Query: 941 IILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHI 975
           +ILD   ++ +D+  VK+   + KE  + GI +++
Sbjct: 67  VILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYL 101


>pdb|2O1W|A Chain A, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
 pdb|2O1W|B Chain B, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
 pdb|2O1W|C Chain C, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
 pdb|2O1W|D Chain D, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
 pdb|2O1W|E Chain E, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
          Length = 506

 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 330 WKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANA 389
           WKE    I+LG+      + R++ L+R   +    D T ++ +V     K+ K +  A +
Sbjct: 397 WKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGS 456

Query: 390 SRK 392
           SRK
Sbjct: 457 SRK 459


>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
 pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
 pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
 pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
          Length = 666

 Score = 30.4 bits (67), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 330 WKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANA 389
           WKE    I+LG+      + R++ L+R   +    D T ++ +V     K+ K +  A +
Sbjct: 397 WKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGS 456

Query: 390 SRK 392
           SRK
Sbjct: 457 SRK 459


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,157,064
Number of Sequences: 62578
Number of extensions: 1058829
Number of successful extensions: 2247
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2239
Number of HSP's gapped (non-prelim): 9
length of query: 1124
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1015
effective length of database: 8,152,335
effective search space: 8274620025
effective search space used: 8274620025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)