Query psy16876
Match_columns 1124
No_of_seqs 672 out of 3470
Neff 6.6
Searched_HMMs 46136
Date Sat Aug 17 00:21:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2769|consensus 100.0 2E-89 4.4E-94 766.0 27.6 345 178-597 157-507 (522)
2 TIGR00815 sulP high affinity s 100.0 1.2E-59 2.5E-64 573.2 27.0 509 469-992 8-548 (563)
3 PF08572 PRP3: pre-mRNA proces 100.0 2.8E-59 6E-64 497.8 17.3 213 183-395 1-223 (223)
4 KOG0236|consensus 100.0 3.1E-57 6.7E-62 555.0 26.5 531 458-1003 61-632 (665)
5 COG0659 SUL1 Sulfate permease 100.0 4.1E-57 8.8E-62 543.1 25.0 493 469-991 15-527 (554)
6 PRK11660 putative transporter; 100.0 2.5E-55 5.5E-60 535.4 25.8 476 469-992 23-544 (568)
7 PF00916 Sulfate_transp: Sulfa 100.0 7E-36 1.5E-40 334.6 15.1 270 567-842 4-280 (280)
8 COG2252 Xanthine/uracil/vitami 100.0 1.8E-33 3.9E-38 322.3 3.7 373 462-872 6-406 (436)
9 KOG2769|consensus 99.9 6.8E-25 1.5E-29 247.7 14.6 171 281-458 260-458 (522)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 1.3E-24 2.8E-29 198.3 4.0 75 1050-1124 1-75 (84)
11 KOG0236|consensus 99.8 1.3E-22 2.8E-27 250.1 2.2 86 1039-1124 54-139 (665)
12 TIGR00801 ncs2 uracil-xanthine 99.8 2.6E-18 5.7E-23 202.9 20.0 309 523-869 67-412 (415)
13 TIGR03173 pbuX xanthine permea 99.8 5E-18 1.1E-22 200.4 21.5 207 630-850 146-366 (406)
14 PRK10720 uracil transporter; P 99.7 2.7E-17 5.9E-22 194.6 19.9 236 628-876 153-412 (428)
15 PF06544 DUF1115: Protein of u 99.7 4.8E-18 1E-22 168.7 4.4 112 485-596 1-117 (128)
16 PRK11660 putative transporter; 99.6 4.1E-17 8.8E-22 200.2 3.6 77 1047-1124 7-88 (568)
17 TIGR00815 sulP high affinity s 99.6 4.3E-17 9.3E-22 199.9 3.5 73 1051-1124 1-73 (563)
18 COG2233 UraA Xanthine/uracil p 99.6 3.1E-14 6.8E-19 165.7 17.6 276 571-872 129-432 (451)
19 COG0659 SUL1 Sulfate permease 99.5 3.2E-15 6.9E-20 181.3 4.1 76 1047-1123 4-79 (554)
20 PF00860 Xan_ur_permease: Perm 99.5 1.4E-13 2.9E-18 162.0 15.7 300 519-862 57-386 (389)
21 TIGR03616 RutG pyrimidine util 99.5 6.9E-13 1.5E-17 157.3 19.9 166 663-833 197-372 (429)
22 PRK11412 putative uracil/xanth 99.5 2.2E-12 4.9E-17 152.2 20.9 241 570-839 124-374 (433)
23 PF01740 STAS: STAS domain; I 99.3 9.7E-12 2.1E-16 121.3 7.6 96 900-995 4-105 (117)
24 cd06844 STAS Sulphate Transpor 99.2 2.9E-11 6.3E-16 115.0 8.4 89 902-992 5-93 (100)
25 TIGR02886 spore_II_AA anti-sig 99.2 3.3E-11 7.3E-16 115.5 8.5 91 903-995 6-96 (106)
26 cd07041 STAS_RsbR_RsbS_like Su 99.2 7.1E-11 1.5E-15 113.8 8.4 89 903-993 8-96 (109)
27 PF08572 PRP3: pre-mRNA proces 99.0 6.3E-10 1.4E-14 119.9 8.9 101 279-380 109-214 (223)
28 cd07042 STAS_SulP_like_sulfate 98.9 4.4E-09 9.5E-14 100.2 10.0 91 902-993 6-96 (107)
29 TIGR00377 ant_ant_sig anti-ant 98.9 4.8E-09 1E-13 100.7 8.9 92 903-996 10-101 (108)
30 cd07043 STAS_anti-anti-sigma_f 98.8 1.6E-08 3.4E-13 94.9 8.9 90 904-996 7-96 (99)
31 TIGR00843 benE benzoate transp 98.7 1.5E-06 3.2E-11 101.3 20.7 196 662-865 180-391 (395)
32 COG1366 SpoIIAA Anti-anti-sigm 98.5 2.9E-07 6.2E-12 90.3 8.3 87 907-995 15-101 (117)
33 PF13466 STAS_2: STAS domain 98.4 9.5E-07 2.1E-11 80.3 7.6 78 909-990 1-78 (80)
34 TIGR00834 ae anion exchange pr 98.3 3.6E-05 7.8E-10 97.4 22.3 113 711-824 657-791 (900)
35 KOG1172|consensus 98.2 5.9E-05 1.3E-09 93.3 20.3 160 709-871 631-832 (876)
36 PF03594 BenE: Benzoate membra 98.2 7.6E-05 1.6E-09 85.9 19.4 196 664-867 166-377 (378)
37 KOG1292|consensus 97.8 0.00045 9.7E-09 81.0 16.2 109 715-824 275-391 (510)
38 COG3135 BenE Uncharacterized p 97.4 0.004 8.7E-08 70.6 16.4 197 664-869 181-394 (402)
39 PF00955 HCO3_cotransp: HCO3- 96.9 0.00021 4.6E-09 86.2 0.0 112 712-824 339-472 (510)
40 COG3113 Predicted NTP binding 96.3 0.012 2.6E-07 55.3 6.9 80 908-991 13-92 (99)
41 PF11840 DUF3360: Protein of u 96.2 0.15 3.3E-06 58.3 16.4 111 737-850 318-430 (492)
42 PRK10720 uracil transporter; P 86.2 13 0.00029 44.9 15.0 129 740-871 40-196 (428)
43 TIGR00801 ncs2 uracil-xanthine 81.1 17 0.00038 43.7 13.2 84 786-871 98-203 (415)
44 COG2233 UraA Xanthine/uracil p 80.0 6 0.00013 47.7 8.5 127 744-872 57-215 (451)
45 PF06544 DUF1115: Protein of u 79.3 0.73 1.6E-05 46.1 0.6 41 415-455 1-65 (128)
46 TIGR00844 c_cpa1 na(+)/h(+) an 79.0 29 0.00063 44.9 14.4 44 627-677 10-53 (810)
47 TIGR03173 pbuX xanthine permea 78.3 40 0.00087 40.4 15.0 127 743-871 35-187 (406)
48 PF10337 DUF2422: Protein of u 77.1 22 0.00049 43.3 12.6 79 785-872 137-215 (459)
49 PRK11412 putative uracil/xanth 76.1 37 0.0008 41.2 13.8 85 785-871 107-211 (433)
50 KOG4364|consensus 73.5 19 0.00041 44.6 10.2 12 309-320 243-254 (811)
51 TIGR03616 RutG pyrimidine util 72.4 1.1E+02 0.0023 37.2 16.6 129 740-871 56-211 (429)
52 PF03222 Trp_Tyr_perm: Tryptop 68.0 1.8E+02 0.0038 34.9 17.0 45 809-853 284-328 (394)
53 TIGR00843 benE benzoate transp 68.0 47 0.001 39.7 11.9 72 746-818 64-145 (395)
54 PF00860 Xan_ur_permease: Perm 66.2 32 0.00069 41.0 10.2 39 786-824 97-137 (389)
55 TIGR02865 spore_II_E stage II 61.6 1.8E+02 0.004 38.0 16.5 17 955-971 375-391 (764)
56 PF07613 DUF1576: Protein of u 60.9 43 0.00094 35.7 8.8 26 806-833 61-86 (183)
57 COG1269 NtpI Archaeal/vacuolar 58.7 2.8E+02 0.0061 35.6 17.2 15 666-680 416-430 (660)
58 PRK09776 putative diguanylate 57.0 2.4E+02 0.0052 38.0 17.3 13 663-675 47-59 (1092)
59 PRK00247 putative inner membra 56.4 75 0.0016 38.4 10.8 15 26-40 61-75 (429)
60 PF03594 BenE: Benzoate membra 54.8 3.3E+02 0.0071 32.5 15.3 152 712-871 8-179 (378)
61 COG3180 AbrB Putative ammonia 54.2 1.8E+02 0.0039 34.2 13.1 46 756-803 118-163 (352)
62 TIGR00834 ae anion exchange pr 52.8 3E+02 0.0065 36.6 16.0 86 725-810 385-486 (900)
63 COG0733 Na+-dependent transpor 51.8 1.8E+02 0.0039 35.3 12.9 65 700-764 202-269 (439)
64 PF14213 DUF4325: Domain of un 51.5 31 0.00067 31.0 5.2 65 920-988 3-70 (74)
65 PF03904 DUF334: Domain of unk 51.2 44 0.00096 36.6 7.0 35 838-872 191-225 (230)
66 COG1296 AzlC Predicted branche 50.7 8.6 0.00019 42.7 1.7 56 1063-1120 10-65 (238)
67 PRK05771 V-type ATP synthase s 48.9 5E+02 0.011 33.2 17.3 26 798-823 549-576 (646)
68 PF11744 ALMT: Aluminium activ 48.6 68 0.0015 38.6 8.8 65 750-824 67-135 (406)
69 PF03818 MadM: Malonate/sodium 48.5 24 0.00053 30.5 3.6 21 661-681 38-58 (60)
70 PRK10363 cpxP periplasmic repr 47.0 1.5E+02 0.0033 31.1 9.9 63 306-384 44-106 (166)
71 TIGR02921 PEP_integral PEP-CTE 45.1 3.3E+02 0.0073 34.0 13.5 94 739-853 104-201 (952)
72 TIGR00840 b_cpa1 sodium/hydrog 44.3 1.4E+02 0.0029 37.7 10.9 18 661-678 34-51 (559)
73 PRK10949 protease 4; Provision 43.9 3E+02 0.0065 35.1 13.9 54 921-976 98-151 (618)
74 PF01970 TctA: Tripartite tric 43.6 6.8E+02 0.015 30.4 21.1 35 742-776 227-261 (419)
75 PRK09757 PTS system N-acetylga 42.3 1.5E+02 0.0033 33.7 9.9 64 799-869 167-239 (267)
76 COG3715 ManY Phosphotransferas 40.6 1.8E+02 0.0038 33.0 9.9 58 742-800 53-110 (265)
77 COG0814 SdaC Amino acid permea 40.2 3.5E+02 0.0076 32.7 13.3 23 712-734 195-217 (415)
78 PF03169 OPT: OPT oligopeptide 40.1 2.6E+02 0.0057 35.5 12.8 21 739-759 464-484 (624)
79 TIGR00831 a_cpa1 Na+/H+ antipo 37.7 5.2E+02 0.011 32.3 14.6 18 661-678 21-38 (525)
80 COG1283 NptA Na+/phosphate sym 37.7 1.5E+02 0.0032 36.9 9.5 38 663-700 45-82 (533)
81 COG4346 Predicted membrane-bou 37.3 1.1E+02 0.0023 35.8 7.5 79 781-865 157-239 (438)
82 KOG1966|consensus 36.9 58 0.0013 40.5 5.8 53 817-870 210-262 (670)
83 TIGR02123 TRAP_fused TRAP tran 34.9 1.1E+03 0.023 30.2 16.9 26 624-649 86-111 (613)
84 PF01566 Nramp: Natural resist 34.5 2.5E+02 0.0053 33.0 10.6 28 782-810 247-275 (358)
85 PF03956 DUF340: Membrane prot 34.0 75 0.0016 34.2 5.6 59 804-862 23-81 (191)
86 COG4129 Predicted membrane pro 33.4 91 0.002 36.5 6.6 89 776-871 8-99 (332)
87 PF14362 DUF4407: Domain of un 33.1 2.4E+02 0.0052 32.3 10.0 63 800-871 38-103 (301)
88 PRK02868 hypothetical protein; 32.7 3.3E+02 0.0071 30.6 10.4 115 741-855 70-199 (245)
89 PF11744 ALMT: Aluminium activ 32.7 78 0.0017 38.1 6.0 45 760-804 44-88 (406)
90 cd07023 S49_Sppa_N_C Signal pe 32.1 2.1E+02 0.0045 30.9 8.8 65 906-973 2-69 (208)
91 cd07019 S49_SppA_1 Signal pept 30.6 2.2E+02 0.0047 30.9 8.6 67 906-975 2-75 (211)
92 TIGR00705 SppA_67K signal pept 30.2 5.4E+02 0.012 32.6 13.1 55 920-976 78-132 (584)
93 PF06790 UPF0259: Uncharacteri 29.7 8.5E+02 0.018 27.4 13.4 106 744-849 76-196 (248)
94 PF04647 AgrB: Accessory gene 29.7 5.6E+02 0.012 26.9 11.4 21 780-800 74-94 (185)
95 TIGR00706 SppA_dom signal pept 29.5 2.2E+02 0.0047 30.8 8.4 63 906-973 2-64 (207)
96 PF10688 Imp-YgjV: Bacterial i 28.8 2E+02 0.0044 30.1 7.7 91 766-870 57-147 (163)
97 PF04632 FUSC: Fusaric acid re 28.6 3.1E+02 0.0066 34.8 10.9 60 798-872 429-488 (650)
98 KOG1144|consensus 28.4 2.6E+02 0.0057 36.0 9.4 30 951-980 827-856 (1064)
99 KOG0579|consensus 28.0 2.7E+02 0.0058 35.3 9.3 32 368-399 845-878 (1187)
100 PRK02509 hypothetical protein; 28.0 6E+02 0.013 34.0 12.9 12 1042-1053 651-662 (973)
101 PF11085 YqhR: Conserved membr 27.0 1.5E+02 0.0033 31.3 6.2 22 846-867 133-154 (173)
102 PF13197 DUF4013: Protein of u 26.5 7.3E+02 0.016 25.6 12.8 23 702-724 37-59 (169)
103 COG5439 Uncharacterized conser 26.3 75 0.0016 30.1 3.4 53 937-989 45-98 (112)
104 COG4129 Predicted membrane pro 26.1 1.6E+02 0.0034 34.6 6.9 17 854-870 132-148 (332)
105 PF02308 MgtC: MgtC family; I 26.0 3.1E+02 0.0067 27.7 8.1 28 769-796 14-42 (134)
106 KOG2780|consensus 25.0 75 0.0016 35.6 3.7 19 523-541 165-183 (302)
107 PF05977 MFS_3: Transmembrane 24.9 8.8E+02 0.019 30.2 13.6 16 745-760 259-274 (524)
108 TIGR01667 YCCS_YHJK integral m 24.8 2.3E+02 0.005 36.7 8.7 18 806-823 132-149 (701)
109 KOG0163|consensus 24.5 1.1E+02 0.0023 38.9 5.2 77 316-422 935-1018(1259)
110 PTZ00266 NIMA-related protein 23.2 6E+02 0.013 34.4 12.0 12 127-138 151-162 (1021)
111 PF04474 DUF554: Protein of un 23.2 6E+02 0.013 28.2 10.2 23 661-683 54-76 (226)
112 cd00394 Clp_protease_like Case 23.2 1.7E+02 0.0037 29.9 5.9 57 908-967 1-57 (161)
113 TIGR01666 YCCS hypothetical me 23.1 1.9E+02 0.0041 37.5 7.3 21 1092-1112 470-490 (704)
114 KOG4538|consensus 22.9 85 0.0018 30.6 3.2 24 375-398 70-95 (130)
115 COG2985 Predicted permease [Ge 22.8 2E+02 0.0043 35.2 6.9 74 739-816 422-495 (544)
116 TIGR00930 2a30 K-Cl cotranspor 22.8 2.9E+02 0.0062 37.2 9.2 39 780-818 436-474 (953)
117 PF00916 Sulfate_transp: Sulfa 22.4 2.5E+02 0.0055 31.4 7.6 26 739-764 174-199 (280)
118 PRK10983 putative inner membra 22.4 1.2E+03 0.026 27.6 13.5 25 786-810 243-267 (368)
119 PRK15132 tyrosine transporter 22.3 1.2E+03 0.026 28.0 13.6 20 810-829 282-301 (403)
120 COG4239 ABC-type uncharacteriz 22.3 2.6E+02 0.0056 31.8 7.1 20 664-683 154-173 (341)
121 KOG2891|consensus 22.2 4.8E+02 0.01 29.5 9.1 15 317-331 281-295 (445)
122 PF13858 DUF4199: Protein of u 22.1 7.5E+02 0.016 25.2 10.5 41 828-872 48-88 (163)
123 PRK12933 secD preprotein trans 21.5 4.6E+02 0.0099 33.3 9.9 16 806-821 491-506 (604)
124 TIGR00728 OPT_sfam oligopeptid 21.4 1.4E+03 0.03 29.3 14.7 21 739-759 484-504 (654)
125 cd07022 S49_Sppa_36K_type Sign 21.2 3.9E+02 0.0084 29.0 8.5 56 919-979 26-81 (214)
126 cd03684 ClC_3_like ClC-3-like 21.2 1.4E+03 0.031 27.7 14.1 30 740-769 124-153 (445)
127 PRK12438 hypothetical protein; 21.2 7.6E+02 0.017 33.2 12.1 12 1042-1053 573-584 (991)
128 PF10200 Ndufs5: NADH:ubiquino 21.1 1.3E+02 0.0028 28.9 4.0 20 327-346 77-96 (96)
129 PF11964 SpoIIAA-like: SpoIIAA 20.9 1.1E+02 0.0025 28.8 3.8 78 905-984 1-79 (109)
130 PF09930 DUF2162: Predicted tr 20.9 4E+02 0.0086 29.6 8.3 18 809-826 72-89 (224)
131 COG3135 BenE Uncharacterized p 20.8 4.1E+02 0.009 31.4 8.6 76 786-871 110-194 (402)
132 PRK05326 potassium/proton anti 20.8 1.7E+03 0.037 27.9 15.9 17 661-677 29-45 (562)
133 PF01384 PHO4: Phosphate trans 20.7 5.3E+02 0.012 30.1 9.9 39 738-776 17-55 (326)
134 COG1289 Predicted membrane pro 20.7 4.7E+02 0.01 33.7 10.3 18 854-871 483-500 (674)
135 PLN03086 PRLI-interacting fact 20.5 2.5E+02 0.0055 35.2 7.4 75 317-418 4-78 (567)
136 COG1121 ZnuC ABC-type Mn/Zn tr 20.3 2.9E+02 0.0062 31.2 7.2 42 936-978 156-197 (254)
No 1
>KOG2769|consensus
Probab=100.00 E-value=2e-89 Score=766.02 Aligned_cols=345 Identities=56% Similarity=0.858 Sum_probs=310.4
Q ss_pred CccccCCCCCCCCCCCCcccCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhcCCCCCCCC
Q psy16876 178 TEDLSESKFFDPRISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIAPKMEDDQ 257 (1124)
Q Consensus 178 ~~~~~~~~~~d~~~~~~~~~r~~~~~~f~~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1124)
.......+||||| ..++..|.+|+|+|||+|||++.|+++|.++++|+||+||++.++|+||++++++++|+|+
T Consensus 157 ~~~~~li~n~d~~-~~~~~~r~rr~f~f~e~gkf~~~an~~r~~a~le~Lq~eis~~a~k~gI~~~~~la~~~p~----- 230 (522)
T KOG2769|consen 157 SNLSGLIPNLDPR-TKKPRKRGRRTFLFHESGKFIKLANRHRYKAQLERLQNEISQAARKTGISTATKLALIAPK----- 230 (522)
T ss_pred ccccccccccChh-hccchhccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhccCC-----
Confidence 3444557889998 5667788999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccCccccccccccccc--ccccccccccccCCCCCCCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHHHHHHH
Q psy16876 258 DEMPEVEWWDAVIMVEETYEKEN--NIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQE 335 (1124)
Q Consensus 258 ~~~p~~ewwd~~~~~~~~~~~~~--~~~~~~i~~~v~hp~~~~~~~~~~~~~~~~~~~tkk~rk~~rr~~~~~~~~~k~~ 335 (1124)
+++|+|||||..||+++.|.++. .|....|++|||||+|+.||.++..|+|+++|||||||||||||+|+|+++|||+
T Consensus 231 ~~iP~iEwwD~~il~~~d~~dEn~~~i~~~~it~~IeHP~~~~PP~e~~~p~~l~vyLTKKErKKLRRQ~R~ea~KEkqe 310 (522)
T KOG2769|consen 231 DDIPAIEWWDSNILTNDDTIDENHLKIDQSIITNLIEHPIPMLPPAENLTPVSLPVYLTKKERKKLRRQRRKEARKEKQE 310 (522)
T ss_pred CCCchhhhhcccccccCCcccccchhhhHHHHHHHhcCCcccCCCcccCCCCccceeecHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999886554333 4556889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccccccccccccccccccCCchhhHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHhhcccccccee
Q psy16876 336 KIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVH 415 (1124)
Q Consensus 336 ~~~~~~~~p~~~k~~~~n~~~v~~~~a~~dpt~~e~~v~~q~~~r~~~h~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~ 415 (1124)
+|||||+|||+||||+||||+|||++|++||||||++||+||++|+++||++
T Consensus 311 kIrLGL~~ppePKVKiSNLMrVLgsEAiqDPTK~E~~VR~Q~aeR~kaHe~~---------------------------- 362 (522)
T KOG2769|consen 311 KIRLGLEPPPEPKVKLSNLMRVLGSEAIQDPTKLEAEVRDQMAERQKAHEDE---------------------------- 362 (522)
T ss_pred HHHhcCCCCCCCcchHHHHHHHhhhccccCcHHHHHHHHHHHHHHHHHhhhh----------------------------
Confidence 9999999999999999999999999999999999999999999998776654
Q ss_pred eeeeechhhhhhcccccCCchhhHHHHHHHHHHhHHhhHHhhhhhccchHHHHHHHHhhhcccccccEEEEEEEEeccCC
Q psy16876 416 VALRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVAVYRVDDFSN 495 (1124)
Q Consensus 416 ~~~~~~~l~~~l~~~a~~~~~~~~~~v~~~~~~R~~~~e~~n~~RkLt~eqr~ek~~~kl~~D~~aGi~vav~~I~~L~n 495 (1124)
|++||||++||++|+.+++.+|.+.|++|.||+|.+|.|
T Consensus 363 -----------------------------------------N~aRKLT~~qkreKk~rKl~ED~st~v~~~V~r~K~l~~ 401 (522)
T KOG2769|consen 363 -----------------------------------------NAARKLTPEQKREKKERKLFEDPSTGVHCSVYRIKNLQN 401 (522)
T ss_pred -----------------------------------------hhhhcCCHHHHHHHHHhhhccCCCceEEEEEEEEecccC
Confidence 555556666666666666777888999999999999999
Q ss_pred CCcccccccCccchheeEEEEEecCcceEEEcCCcchhhhhhhhhhcccccccccc-cc---cCCCcccCchheeeecch
Q psy16876 496 PSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMI-KS---NEGKETPNKCVLVWELGS 571 (1124)
Q Consensus 496 ps~~fkv~~nA~q~~LtG~~v~~~~~~~VvVeGG~kAi~aY~~LM~~rI~W~e~~~-~~---~~~~~~~n~c~lVweGgv 571 (1124)
|+++|||++||+|+.||||||++.++++||||||+||+++|++||+.||+|+|++. +. .+....+|+|.+||+|.+
T Consensus 402 p~~rFKve~NAkql~ltG~~vl~~d~~vvVvEGg~Ka~KkykrLMl~RIkW~e~~~~k~d~~~e~~~~~N~C~lvWEG~~ 481 (522)
T KOG2769|consen 402 PKKRFKVEMNAKQLQLTGVCVLHRDMNVVVVEGGPKAQKKYKRLMLKRIKWEEDFELKKDEDEEAVNGGNKCVLVWEGTV 481 (522)
T ss_pred CccceeeeechhhhceeeeEEEecCCcEEEEecCHHHHHHHHHHHHhhcCchhhhhhcccchhhccCCCceEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999853 22 223345799999999999
Q ss_pred hhhhhhhccccccccchhhHHHhhhc
Q psy16876 572 LSVLMSDIMISGFTTGTAILVILSQI 597 (1124)
Q Consensus 572 ~~r~F~~~vi~g~~t~aai~i~lsQL 597 (1124)
..+.|..|.++.|+++..+..++.+.
T Consensus 482 ~rr~F~~~~~k~c~~e~~Ar~~f~k~ 507 (522)
T KOG2769|consen 482 QRRSFREFKFKECPTEKMAREFFEKH 507 (522)
T ss_pred cCCcccceeEEecCcHHHHHHHHHHc
Confidence 99999999999999999987775543
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=1.2e-59 Score=573.23 Aligned_cols=509 Identities=28% Similarity=0.440 Sum_probs=422.5
Q ss_pred HHHHhhhcccccccEEEEEEEEeccCCCCcccccccCccchh-eeEEEE------EecCcceEEEcCCcchhhhhhhhhh
Q psy16876 469 EKKIRKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLF-MTGAVV------MYKDCNVIVVEGGPKQQSKFKRLMM 541 (1124)
Q Consensus 469 ek~~~kl~~D~~aGi~vav~~I~~L~nps~~fkv~~nA~q~~-LtG~~v------~~~~~~~VvVeGG~kAi~aY~~LM~ 541 (1124)
.++.++++.|+.+|+++++..|| ....|..-.+..+.+ +.++.+ ++++.+..++ ||.+..+ +|.
T Consensus 8 ~y~~~~l~~Di~aGltv~~~~iP----~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~--Gp~a~~s---l~~ 78 (563)
T TIGR00815 8 HYRLKKFKGDLMAGLTVGILLIP----QAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAI--GPVAVMS---LLL 78 (563)
T ss_pred hCCHHHhhhHHHHHHHHHHHHHH----HHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccC--CHHHHHH---HHH
Confidence 45567799999999999999999 666777766666543 333322 7788888777 8888654 443
Q ss_pred cccccccccccccCCCc-cc---Cchh---------eeeecchhhhhhhhccccccccchhhHHHhhhchhhheeeeecc
Q psy16876 542 HRIKWEEDMIKSNEGKE-TP---NKCV---------LVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRH 608 (1124)
Q Consensus 542 ~rI~W~e~~~~~~~~~~-~~---n~c~---------lVweGgv~~r~F~~~vi~g~~t~aai~i~lsQL~~~lGl~~~~~ 608 (1124)
..+-=+... .+..+.. .. ..+. -+...|.+.+++|.+++.||.+++++.++.+|++.++|++..+.
T Consensus 79 ~~~v~~~~~-~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~ 157 (563)
T TIGR00815 79 GSVIARVGL-QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNT 157 (563)
T ss_pred HHHHHHhcC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 211100000 0000000 00 0000 01223788899999999999999999999999999999976311
Q ss_pred cCchhHHHHHHHHHhhcccc---chhHHHHHHHHHHHHHHHhhccccccccccccccchhHHHHHHHhhhhhhccccccc
Q psy16876 609 IGPFNVIYTLIDVAENIHKT---NYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKY 685 (1124)
Q Consensus 609 ~~~~~~i~~~~~~~~~l~~~---~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~LI~Ii~gtlia~~lg~~~~~ 685 (1124)
..+++..+..++.++++. |+++++++++++++++.+. ++.+++++++++.+|..+++++++++++++++. +.+
T Consensus 158 --~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~-~~~ 233 (563)
T TIGR00815 158 --RTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTK-KLGKRNKKLLFAPAVAPLLVVILATLAVTIGLH-KKQ 233 (563)
T ss_pred --CCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH-HhhhhccchhcccccHHHHHHHHHHHHHHHHcc-CCC
Confidence 235667777777777776 8999999888887776654 445555555556789999999999999888865 457
Q ss_pred ccccccccCCCCCCCCCCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCchhHHHHHhhhhhhhhccCcc
Q psy16876 686 NLSNVGKIPIGLPSPQPPPFY--LIPKLMLDGLFISIVAFSINISMASILA-KKKYKIDSNQELLASGVSNIFASFFSCI 762 (1124)
Q Consensus 686 ~v~~vg~ip~glP~~~lP~f~--~~~~ll~~~~~iaiv~~~esi~ia~~~~-~~g~~~d~nqELiA~GlaNivgglfGg~ 762 (1124)
++.++|.+|.++|.+.+|.++ .+..+++.++++++++++|++++++.++ ++|+++|.||||+++|++|++||+|||+
T Consensus 234 ~~~~~g~ip~g~p~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~ 313 (563)
T TIGR00815 234 GVSILGHIPSGLSFFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCY 313 (563)
T ss_pred CeEEEeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCcc
Confidence 889999999999888777655 6778889999999999999999999987 5789999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHH
Q psy16876 763 PFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACV 842 (1124)
Q Consensus 763 P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v 842 (1124)
|++++++||++|.++|+|||++++++|+++++++++++|++++||+++||++++++++.|++ |++++.+||.++.|+.+
T Consensus 314 p~~~s~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~-~~~~~~~~~~~~~d~~i 392 (563)
T TIGR00815 314 PATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLID-YKELYKLWKADKMDFVV 392 (563)
T ss_pred CCCCcchHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccC-HHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999885 89999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcceeeEEEeeeccCCcccccccccccccCCCcEEEEEEecceeecchHH
Q psy16876 843 WCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDK 922 (1124)
Q Consensus 843 ~i~tfl~~l~~~l~~GI~vGI~lsll~~v~~~~~~~v~~~gr~~~~~~~~~~~~~~~~~~~~~i~vvrl~G~LfF~na~~ 922 (1124)
+++|+++++++|+..||++|++++++.+++++++|++..+++.++++.+++.+++++..+.+++.++|++|+|||+|+++
T Consensus 393 ~~~~~~~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~ 472 (563)
T TIGR00815 393 WLVTFFGVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAED 472 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHH
Confidence 99999999999999999999999999999999999999999988888888887777777778999999999999999999
Q ss_pred HHHHHHhhhc------cCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchhhhhhcCcccc
Q psy16876 923 VFHKISKLSL------SSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLN 992 (1124)
Q Consensus 923 l~~~I~~~~~------~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v~~vl~~~~l~ 992 (1124)
+++++.+... +..++.+.+|+||++|+++|+||+++|.++.++++++|+++.++++++++++.+++..+.
T Consensus 473 ~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~gl~ 548 (563)
T TIGR00815 473 LKDRLLKRIEDETRRELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGGLV 548 (563)
T ss_pred HHHHHHHHHhhhccccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCCch
Confidence 9999876543 122235899999999999999999999999999999999999999999999999988443
No 3
>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa [].
Probab=100.00 E-value=2.8e-59 Score=497.81 Aligned_cols=213 Identities=60% Similarity=0.931 Sum_probs=197.0
Q ss_pred CCCCCCCCCC-CCcccCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhcCCCCCCCCCCCC
Q psy16876 183 ESKFFDPRIS-AKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIAPKMEDDQDEMP 261 (1124)
Q Consensus 183 ~~~~~d~~~~-~~~~~r~~~~~~f~~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 261 (1124)
+|+|||||+. .+.++|.+|+|+||+||+|+++|+++|.++++|++++++++.++++|+++++++....+..+...++||
T Consensus 1 ~npy~d~~~~~~~~~~r~~r~l~F~e~Gk~~~~a~~~R~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~iP 80 (223)
T PF08572_consen 1 ENPYFDPRLKKSKPKKRKRRALKFHEKGKFIKQAEQLRRKAQLEELKKEIAEEARKAGIQSAEKLAEKIPKRELPEDEIP 80 (223)
T ss_pred CCCCcCCcccccccccCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHhhcccccccccCC
Confidence 5899999999 677889999999999999999999999999999999999999999999999888777777777779999
Q ss_pred cccccCccccccccccc---c--ccc--ccccccccccCCCCCCCCCCCCCCCc--cCCcCCHHHHHHHHHHHHHHHHHH
Q psy16876 262 EVEWWDAVIMVEETYEK---E--NNI--KTSAITNLVEHPIQMKPPSDMAKPVY--MPVFLTDKERKKLRRQNRREAWKE 332 (1124)
Q Consensus 262 ~~ewwd~~~~~~~~~~~---~--~~~--~~~~i~~~v~hp~~~~~~~~~~~~~~--~~~~~tkk~rk~~rr~~~~~~~~~ 332 (1124)
+|||||.+||++++|++ + ..+ ..+.|++|||||+++++|.+...+.+ +++|||||||||+||++|+|+++|
T Consensus 81 diEWWD~~~l~~~~y~~~~~~~~~~~~~~~~~It~~VeHPv~i~~p~~~~~~~~~~~~~~LTkkErKKlRr~rR~e~~kE 160 (223)
T PF08572_consen 81 DIEWWDRPILPDPSYDDLNDESDLEIDEEESSITNYVEHPVPIKPPYEKNKPPPVVPPVYLTKKERKKLRRQRRQEKQKE 160 (223)
T ss_pred CccccchhhcCCCCccccccccchhcccchhhhhhhhhCCCCCCCccccccccccccCcccChHHHHHHHHHHHHHHHHH
Confidence 99999999999998872 1 112 46789999999999999987555544 999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCccccccccccccccccccCCchhhHHHHHHHHHHHHhHHHHHhhhhhhH
Q psy16876 333 EQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTV 395 (1124)
Q Consensus 333 k~~~~~~~~~~p~~~k~~~~n~~~v~~~~a~~dpt~~e~~v~~q~~~r~~~h~~~n~~r~~~~ 395 (1124)
||++|++||+|||+||||+||||+||+++||+|||+||++||+||++|+++|+++|++||||+
T Consensus 161 kq~kIrlGL~ppP~PKVKlSNLMrVL~~eAV~DPT~vE~~Vr~Q~eeR~~~He~~N~~RkLt~ 223 (223)
T PF08572_consen 161 KQDKIRLGLEPPPPPKVKLSNLMRVLGNEAVQDPTKVEAKVRKQMEERQQKHEERNEERKLTP 223 (223)
T ss_pred HHHHHHcCCCCCCCCcccHHHHHHHhhcchhcCcHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 4
>KOG0236|consensus
Probab=100.00 E-value=3.1e-57 Score=554.96 Aligned_cols=531 Identities=31% Similarity=0.527 Sum_probs=438.1
Q ss_pred hhhccchHHHH-HHHH-hhhcccccccEEEEEEEEeccCCCCcccccccCccchh-----eeEEEE--EecCcceEEEcC
Q psy16876 458 ASRKLTVEQKR-EKKI-RKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLF-----MTGAVV--MYKDCNVIVVEG 528 (1124)
Q Consensus 458 ~~RkLt~eqr~-ek~~-~kl~~D~~aGi~vav~~I~~L~nps~~fkv~~nA~q~~-----LtG~~v--~~~~~~~VvVeG 528 (1124)
..+.++..+|. +++. +++..|+.+|+++++..|| +.+.|..-+|.++.+ ..|+++ +++.+.-+-+
T Consensus 61 l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l~VP----Q~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isi-- 134 (665)
T KOG0236|consen 61 LLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSLSVP----QGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSI-- 134 (665)
T ss_pred HHhhccHhhhhhcCCchhhchHHHhcCceeeeeecc----hHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccc--
Confidence 34456667775 6666 8899999999999999999 667888888866643 445544 6666655555
Q ss_pred Ccchhhhhhhhhhccccccccccccc-----CCC-cc----------cCchheeeecchhhhhhhhccccccccchhhHH
Q psy16876 529 GPKQQSKFKRLMMHRIKWEEDMIKSN-----EGK-ET----------PNKCVLVWELGSLSVLMSDIMISGFTTGTAILV 592 (1124)
Q Consensus 529 G~kAi~aY~~LM~~rI~W~e~~~~~~-----~~~-~~----------~n~c~lVweGgv~~r~F~~~vi~g~~t~aai~i 592 (1124)
|+-|+.. ||....-= +...+.. ... .. -..+..+...|.+.++++.+.+.||++++++.+
T Consensus 135 G~~av~s---Lmv~~~v~-~~v~~~~~~~~~~~~i~va~~lt~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I 210 (665)
T KOG0236|consen 135 GPFAVVS---LMVGTVVS-QVVLSEAPSNDIATTIQVATTLTFLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHI 210 (665)
T ss_pred cHHHHHH---HHHHHHHH-HHHhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhh
Confidence 7777766 66542100 0000000 000 00 012222344589999999999999999999999
Q ss_pred Hhhhchhhheee-eecccCchhHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccccccccc-cccchhHHHHH
Q psy16876 593 ILSQIKHVFGIK-VKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNIS-FPIPTEMIVIV 670 (1124)
Q Consensus 593 ~lsQL~~~lGl~-~~~~~~~~~~i~~~~~~~~~l~~~~~~~l~l~~~~lllllil~~~~~~~l~k~~~-~~IP~~LI~Ii 670 (1124)
+++|++.++|++ ..++.++..++......+.+.+.. +.++++++++++++++... +.++..++++ .++|..+++++
T Consensus 211 ~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~L~~~k~-~~~~~~~k~~~v~~~~~li~vI 288 (665)
T KOG0236|consen 211 VTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT-LATLVLSLIFLVVLLLTKE-LNPKFKKKLFSVPIPFELIVVI 288 (665)
T ss_pred hHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc-chhhhhHHHHHHHHHHHHH-hhhhhcccceeecccHHHHHHH
Confidence 999999999998 565666666666666666666555 6678888877777665442 2333334433 68888999999
Q ss_pred HHhhhhhhcccccccccccccccCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCchhHHHHH
Q psy16876 671 AGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAK-KKYKIDSNQELLAS 749 (1124)
Q Consensus 671 ~gtlia~~lg~~~~~~v~~vg~ip~glP~~~lP~f~~~~~ll~~~~~iaiv~~~esi~ia~~~~~-~g~~~d~nqELiA~ 749 (1124)
++|++++.+..+..+....++.+|.|+|++.+|+++.+..++..+++++++++++++++++.+++ ++|.+|.||||+|+
T Consensus 289 i~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAl 368 (665)
T KOG0236|consen 289 IGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIAL 368 (665)
T ss_pred HHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHH
Confidence 99999999998766677777899999999999999988888888999999999999999999984 79999999999999
Q ss_pred hhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHHH
Q psy16876 750 GVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDL 829 (1124)
Q Consensus 750 GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~~~~i 829 (1124)
|++|++||||||+|+|++++||++|.++|+||+++|+++|+++++++++++|+++|||+|+||+++++++.+|+.+++.+
T Consensus 369 G~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~ 448 (665)
T KOG0236|consen 369 GISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDL 448 (665)
T ss_pred HHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977779999
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcceeeEEEeeeccCCcccccccccccccCCCcEEEE
Q psy16876 830 KLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVIL 909 (1124)
Q Consensus 830 ~~l~r~~~~D~~v~i~tfl~~l~~~l~~GI~vGI~lsll~~v~~~~~~~v~~~gr~~~~~~~~~~~~~~~~~~~~~i~vv 909 (1124)
+.+||.++.|+++|+.||+++++.+++.|+++||++++++++.++++|++..+|+.+++++|++.++|.+..+.+++.++
T Consensus 449 ~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~ 528 (665)
T KOG0236|consen 449 KPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFFIILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIF 528 (665)
T ss_pred hhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHHHHHHhcCcchhhhcccCCCccccchhhcchhhccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecceeecchHHHHHHHH--hhhcc-----------CCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEE
Q psy16876 910 RIIGGMNFINKDKVFHKIS--KLSLS-----------SEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIV 976 (1124)
Q Consensus 910 rl~G~LfF~na~~l~~~I~--~~~~~-----------~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~ 976 (1124)
|++++++|+|.+.+.+.+. +...+ ..+..+.+|+||+++++||++|+.+|.++.++++++++.++++
T Consensus 529 r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~~ 608 (665)
T KOG0236|consen 529 RISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHENSIHSVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLLA 608 (665)
T ss_pred EeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccCcceEEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 9999999999888887662 11111 0112578999999999999999999999999999999999999
Q ss_pred ecCchhhhhhcCcccccccccCCcccc
Q psy16876 977 KLLEPVKQVNSHPLLNQDDKDVGPKIF 1003 (1124)
Q Consensus 977 ~l~~~v~~vl~~~~l~~~~~~vg~kif 1003 (1124)
++++++++.+.+. ++++.++.+.+
T Consensus 609 n~~~~v~~~l~~~---~~~~~~~~~~~ 632 (665)
T KOG0236|consen 609 NCPSSVREKLSKA---GFFDFIGKDNL 632 (665)
T ss_pred CCCHHHHHHHHhh---ccccccchhhh
Confidence 9999999888776 34454554443
No 5
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-57 Score=543.15 Aligned_cols=493 Identities=24% Similarity=0.359 Sum_probs=409.6
Q ss_pred HHHHhhhcccccccEEEEEEEEeccCCCCcccccccCccchh-eeEE----EE--EecCcceEEEcCCcchhhhhhhhhh
Q psy16876 469 EKKIRKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLF-MTGA----VV--MYKDCNVIVVEGGPKQQSKFKRLMM 541 (1124)
Q Consensus 469 ek~~~kl~~D~~aGi~vav~~I~~L~nps~~fkv~~nA~q~~-LtG~----~v--~~~~~~~VvVeGG~kAi~aY~~LM~ 541 (1124)
++..++++.|+.+|++|+++.+| .+..|.+-.+..+.. |.++ ++ ++++.+..++ ||.+-.+ .++.
T Consensus 15 ~~~~~~l~~Dl~AGltva~valP----~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~--GPt~a~~--~v~a 86 (554)
T COG0659 15 YYFRSWLRGDLLAGLTVAAVALP----LAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLIS--GPTGAFA--VVLA 86 (554)
T ss_pred ccchhhhHHHHHHHHHHHHHHhH----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccee--ccchhhH--HHHH
Confidence 55556699999999999999999 677888777766543 2222 22 5666666655 6666444 2222
Q ss_pred cccc------cccccccccCCCcccCchhe--eeecchhhhhhhhccccccccchhhHHHhhhchhhheeeeecccCchh
Q psy16876 542 HRIK------WEEDMIKSNEGKETPNKCVL--VWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFN 613 (1124)
Q Consensus 542 ~rI~------W~e~~~~~~~~~~~~n~c~l--VweGgv~~r~F~~~vi~g~~t~aai~i~lsQL~~~lGl~~~~~~~~~~ 613 (1124)
.-+. |+-... -.-..+..|.+ +...|.+.+++|++++.||.+++++.++++|++.++|++...+ +
T Consensus 87 ~~i~~~~~~g~~~~~~---~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~----~ 159 (554)
T COG0659 87 AVIASLVETGLALAFL---ATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVS----G 159 (554)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc----c
Confidence 2221 110000 00000111111 1234888899999999999999999999999999999987543 3
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccccccccccccchhHHHHHHHhhhhhhccccc-ccccccccc
Q psy16876 614 VIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKH-KYNLSNVGK 692 (1124)
Q Consensus 614 ~i~~~~~~~~~l~~~~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~LI~Ii~gtlia~~lg~~~-~~~v~~vg~ 692 (1124)
++..+...+.++...|+.+++++++++++++.+.++. .++|+.+++++++|++++.++.+. .++ .+.|.
T Consensus 160 ~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~---------~~~P~~liaiv~~t~i~~~~~~~~~~~G-~i~~~ 229 (554)
T COG0659 160 FWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLT---------PRIPSPLIALVLGTLIVWIFPLDSLRYG-EIPGS 229 (554)
T ss_pred hHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchh---------hhCCcHHHHHHHHHHHHHHhcCCchhcc-cCccc
Confidence 7777888889999999999999999999888765542 368999999999999999999865 355 68899
Q ss_pred cCCCCCCCCCCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCchhHHHHHhhhhhhhhccCcccccccch
Q psy16876 693 IPIGLPSPQPPPFY--LIPKLMLDGLFISIVAFSINISMASILA-KKKYKIDSNQELLASGVSNIFASFFSCIPFASSLS 769 (1124)
Q Consensus 693 ip~glP~~~lP~f~--~~~~ll~~~~~iaiv~~~esi~ia~~~~-~~g~~~d~nqELiA~GlaNivgglfGg~P~t~s~s 769 (1124)
+|.++|.+.+|+++ .+..+++.++.+++++++|++.+++.++ .+|+++|.||||+|+|+||+++|||||+|+||+++
T Consensus 230 lp~~~~~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p~~g~~s 309 (554)
T COG0659 230 LPSGLPHFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIPATGSIS 309 (554)
T ss_pred CCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCccccchhH
Confidence 99999999999775 4677889999999999999999999998 46789999999999999999999999999999999
Q ss_pred hhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHH-hcCcchhHHHHHHHH
Q psy16876 770 RSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAF-KESYTEACVWCLTFL 848 (1124)
Q Consensus 770 rSav~~~sGarTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~-r~~~~D~~v~i~tfl 848 (1124)
||++|+++|||||++|+++|+++++++++++|+++|||.|+||+++++++++|++ |..+..++ +..+.|+.++++|++
T Consensus 310 rS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~-~~~~~~~~~~~~~~e~~v~~~t~~ 388 (554)
T COG0659 310 RSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLD-WSLLKPLLRKLPRGELLVLLTTAL 388 (554)
T ss_pred HHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc-HHHHHHHHhcCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996 78888844 489999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhcceeeEEEeeeccCCcccccccccccccCCCcEEEEEEecceeecchHHHHHHHH
Q psy16876 849 SVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKIS 928 (1124)
Q Consensus 849 ~~l~~~l~~GI~vGI~lsll~~v~~~~~~~v~~~gr~~~~~~~~~~~~~~~~~~~~~i~vvrl~G~LfF~na~~l~~~I~ 928 (1124)
++++.+++.||.+||++|++++++|.++++....++.++.+. .+.++++..+..+++.+||++|+|||+|++++.+.+.
T Consensus 389 ~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~~~~~i~ 467 (554)
T COG0659 389 LTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADRLERALL 467 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHHHHHHHH
Confidence 999999999999999999999999999988777777655443 3444455666788999999999999999999999998
Q ss_pred hhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchhhhhhcCccc
Q psy16876 929 KLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLL 991 (1124)
Q Consensus 929 ~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v~~vl~~~~l 991 (1124)
+...+ ..+.+|+|+++++++|.|+.++|+++.++++++|+++.+++++.+++..+++...
T Consensus 468 ~~~~~---~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~ 527 (554)
T COG0659 468 GLIEE---RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAGL 527 (554)
T ss_pred HHHhc---cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhcc
Confidence 86421 5789999999999999999999999999999999999999999999888887743
No 6
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=2.5e-55 Score=535.37 Aligned_cols=476 Identities=18% Similarity=0.314 Sum_probs=387.2
Q ss_pred HHHHhhhcccccccEEEEEEEEeccCCCCcccccccCccchh-eeEEE----E--EecCcceEEEcCCcchhhhhhhhhh
Q psy16876 469 EKKIRKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLF-MTGAV----V--MYKDCNVIVVEGGPKQQSKFKRLMM 541 (1124)
Q Consensus 469 ek~~~kl~~D~~aGi~vav~~I~~L~nps~~fkv~~nA~q~~-LtG~~----v--~~~~~~~VvVeGG~kAi~aY~~LM~ 541 (1124)
.++.++++.|+.+|+++++..|| ....|..-.|..+.+ +.++. + ++++.+.+++ ||.+... +++
T Consensus 23 ~y~~~~l~~D~iAGltv~~~~iP----q~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~--Gp~a~~~---~~~ 93 (568)
T PRK11660 23 KYTAARFTRDLIAGITVGIIAIP----LAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVS--GPTAAFV---VIL 93 (568)
T ss_pred cCCHHhhhHHHHHHHHHHHHHHH----HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCccc--ChhHHHH---HHH
Confidence 45567889999999999999999 667777767766543 22322 2 6677777776 8777643 332
Q ss_pred cccccccccccccCCCcc--------cC--chheeeecchhhhhhhhccccccccchhhHHHhhhchhhheeeeecccCc
Q psy16876 542 HRIKWEEDMIKSNEGKET--------PN--KCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGP 611 (1124)
Q Consensus 542 ~rI~W~e~~~~~~~~~~~--------~n--~c~lVweGgv~~r~F~~~vi~g~~t~aai~i~lsQL~~~lGl~~~~~~~~ 611 (1124)
..+. . ..+... +. ....+...|.+.+++|.+++.||.+++++.++.+|++.++|++..+ .+
T Consensus 94 ~~~~--~-----~~~~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~--~~ 164 (568)
T PRK11660 94 YPVS--Q-----QFGLAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAH--VP 164 (568)
T ss_pred HHHH--H-----HhhHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CC
Confidence 1110 0 001000 00 0011223477889999999999999999999999999999997642 23
Q ss_pred hhHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccccccccccccchhHHHHHHHhhhhhhccccccccccccc
Q psy16876 612 FNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVG 691 (1124)
Q Consensus 612 ~~~i~~~~~~~~~l~~~~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~LI~Ii~gtlia~~lg~~~~~~v~~vg 691 (1124)
.+++..+..++.++++++|++++++++++++++++.+. + .++|+.++++++++++++.++.. ..++..+|
T Consensus 165 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~-~--------~~iP~~li~iiv~t~~~~~~~~~-~~~v~~vg 234 (568)
T PRK11660 165 EHYLEKVGALFQALPTINWGDALIGIVTLGVLILWPRL-K--------IRLPGHLPALLAGTAVMGVLNLL-GGHVATIG 234 (568)
T ss_pred ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhh-c--------ccCchHHHHHHHHHHHHHHHhcc-CCCceeec
Confidence 46788888999999999999999999998888775432 2 25899999999999999998764 23444444
Q ss_pred c--------------cCCCCCCCCCC-------------CccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCch
Q psy16876 692 K--------------IPIGLPSPQPP-------------PFYLIPKLMLDGLFISIVAFSINISMASILA-KKKYKIDSN 743 (1124)
Q Consensus 692 ~--------------ip~glP~~~lP-------------~f~~~~~ll~~~~~iaiv~~~esi~ia~~~~-~~g~~~d~n 743 (1124)
. +|.++|.+.+| +|+.+..+++.++.++++++++++.+++.++ ..++++|.|
T Consensus 235 ~~~~~~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n 314 (568)
T PRK11660 235 SRFHYVLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSAN 314 (568)
T ss_pred ccccccccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 3 67777777666 4445667788899999999999999998887 468899999
Q ss_pred hHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHh
Q psy16876 744 QELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGML 823 (1124)
Q Consensus 744 qELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi 823 (1124)
|||+|+|+||++||||||+|++++++||++|.++|||||++++++|+++++++++++|+++|||+++||++++++|+.|+
T Consensus 315 ~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~ 394 (568)
T PRK11660 315 SELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMS 394 (568)
T ss_pred HHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHh-cCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcceeeEEEeeeccCCcccccccccccccC
Q psy16876 824 NQVKDLKLAFK-ESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAID 902 (1124)
Q Consensus 824 ~~~~~i~~l~r-~~~~D~~v~i~tfl~~l~~~l~~GI~vGI~lsll~~v~~~~~~~v~~~gr~~~~~~~~~~~~~~~~~~ 902 (1124)
+ ++.+..+|| .++.|+.+++++|++++++++..||++|+++++++++++.+++. +..+ .++ .+.
T Consensus 395 ~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~~------~~~---~~~ 459 (568)
T PRK11660 395 E-AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLAP------ISV---QDV 459 (568)
T ss_pred h-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----cccc------ccc---ccC
Confidence 6 667777776 58999999999999999999999999999999999999877642 2111 101 234
Q ss_pred CCcEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchh
Q psy16876 903 VPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPV 982 (1124)
Q Consensus 903 ~~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v 982 (1124)
.+++.++|++|+|||+|++++++++.+.. ++.++||+||++|++||+||+++|.++.+++++ |+++.++++++++
T Consensus 460 ~~~i~iv~~~g~L~F~n~~~l~~~l~~~~----~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v 534 (568)
T PRK11660 460 PDDVLVLRINGPLFFAAAERLFTELESRT----EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQP 534 (568)
T ss_pred CCcEEEEEeCCeeeeeeHHHHHHHHHhhC----CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHH
Confidence 56899999999999999999999998642 457899999999999999999999999999999 9999999999999
Q ss_pred hhhhcCcccc
Q psy16876 983 KQVNSHPLLN 992 (1124)
Q Consensus 983 ~~vl~~~~l~ 992 (1124)
++++++..+.
T Consensus 535 ~~~l~~~gl~ 544 (568)
T PRK11660 535 LRTLARAGIQ 544 (568)
T ss_pred HHHHHHCCCh
Confidence 9999988543
No 7
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=7e-36 Score=334.63 Aligned_cols=270 Identities=34% Similarity=0.589 Sum_probs=229.6
Q ss_pred eecchhhhhhhhccccccccchhhHHHhhhchhhheeee-ecccCchhHHHHHHHHHhhccc-cchhHHHHHHHHHHHHH
Q psy16876 567 WELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKV-KRHIGPFNVIYTLIDVAENIHK-TNYVAFGVVVILVSVLI 644 (1124)
Q Consensus 567 weGgv~~r~F~~~vi~g~~t~aai~i~lsQL~~~lGl~~-~~~~~~~~~i~~~~~~~~~l~~-~~~~~l~l~~~~lllll 644 (1124)
+..|.+.+++|.+++.||.+++++.++.+|++.++|++. ..+.+....+. ..+..+.+ +++.++.++++++++++
T Consensus 4 lrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 4 LRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIR---ALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred ccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhh---hhhhhhhhccchhhhhhhhHHHHHHh
Confidence 456888999999999999999999999999999999973 22223333333 33444444 47777777777666555
Q ss_pred HHhhccccccccccccccchhHHHHHHHhhhhhhcccccccccccccccCCCCCCCCCC----CccchhHHHHHHHHHHH
Q psy16876 645 IYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPP----PFYLIPKLMLDGLFISI 720 (1124)
Q Consensus 645 il~~~~~~~l~k~~~~~IP~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip~glP~~~lP----~f~~~~~ll~~~~~iai 720 (1124)
+.. +++++++++++..+|+.++++++++++++.++. +..++..+|++|.++|.+.+| +|+.+..+++.++.+++
T Consensus 81 ~~~-~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~-~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~ 158 (280)
T PF00916_consen 81 IIR-LLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLL-DKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAI 158 (280)
T ss_pred hhh-hhhhhccccccccccccceeeehhhhhhhhhhh-ccccccccccccccCccccCcccccccccccccchhHHHHHH
Confidence 433 333344455566899999999999999998855 456889999999999999999 46667778889999999
Q ss_pred HHHHHHHHHHHHHh-hhccCCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHH
Q psy16876 721 VAFSINISMASILA-KKKYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYI 799 (1124)
Q Consensus 721 v~~~esi~ia~~~~-~~g~~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl 799 (1124)
+++++++.+++.++ +++++.|.||||+|+|++|++||+|||+|++++++||++|.++|||||++++++|++++++++++
T Consensus 159 v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~ 238 (280)
T PF00916_consen 159 VGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFL 238 (280)
T ss_pred HHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHH
Confidence 99999999999987 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHH
Q psy16876 800 GPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACV 842 (1124)
Q Consensus 800 ~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v 842 (1124)
+|+++|||+++||++++++++.|++ |+.++.+||.++.|+++
T Consensus 239 ~~~l~~iP~~~La~ili~~~~~l~~-~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 239 APLLAYIPKAVLAAILIVVGISLID-WSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHhcCChhheEC
Confidence 9999999999999999999999986 89999999999999863
No 8
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.8e-33 Score=322.35 Aligned_cols=373 Identities=16% Similarity=0.205 Sum_probs=283.6
Q ss_pred cchHHHHHHHHhhhcccccccEEEEEEEEecc-CCCCcccccccCccchh-------eeEEEE--EecCcceEEEcC-Cc
Q psy16876 462 LTVEQKREKKIRKIKEDTSLEVHVAVYRVDDF-SNPSKKFKVETNCNQLF-------MTGAVV--MYKDCNVIVVEG-GP 530 (1124)
Q Consensus 462 Lt~eqr~ek~~~kl~~D~~aGi~vav~~I~~L-~nps~~fkv~~nA~q~~-------LtG~~v--~~~~~~~VvVeG-G~ 530 (1124)
+++-++.+++.++.|+|+.+|+|+++.+.|.+ +||+++-..+++.++.+ ..||++ ++.|.|+.+.+| |.
T Consensus 6 ~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~An~P~alapgmgl 85 (436)
T COG2252 6 LDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLYANLPIALAPGMGL 85 (436)
T ss_pred HHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHcCchhhcchhhH
Confidence 45566777889999999999999999999998 99999999999866655 223333 678999999999 99
Q ss_pred chhhhhhhhhhcccccccccccccCCCcccCchheeeecch----hhhhhhhccccccccch--hhHHHhhhchhhheee
Q psy16876 531 KQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGS----LSVLMSDIMISGFTTGT--AILVILSQIKHVFGIK 604 (1124)
Q Consensus 531 kAi~aY~~LM~~rI~W~e~~~~~~~~~~~~n~c~lVweGgv----~~r~F~~~vi~g~~t~a--ai~i~lsQL~~~lGl~ 604 (1124)
||+++|+.+..++++|+++ +..++|+|-+ -...+++|+++..+... ++..+++-+-.++|++
T Consensus 86 nAfFaftvv~~~gi~wq~A------------L~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~ 153 (436)
T COG2252 86 NAFFAFTVVLGMGLSWQVA------------LGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLK 153 (436)
T ss_pred HHHHHHHHHHhcCCcHHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999994 5666777621 12333444444444443 3334444444455655
Q ss_pred eecccCchhHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccccccccccccchh-HHHHHHHhhhhhhccccc
Q psy16876 605 VKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTE-MIVIVAGALLSSILDVKH 683 (1124)
Q Consensus 605 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~-LI~Ii~gtlia~~lg~~~ 683 (1124)
.. +++....+++..+++++.+.+.++++++++..++..+ ++++. +++++..+++++.+|...
T Consensus 154 ~~------Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L~~~-----------~i~Gaili~i~~~t~~g~~~g~~~ 216 (436)
T COG2252 154 NA------GIVVANPATLVALGDFTSPGVLLAILGLLLIIVLVSR-----------KIKGAILIGILVTTILGIILGIDV 216 (436)
T ss_pred hC------CeEEecCcceEEeecCCCchHHHHHHHHHHHHHHHHh-----------hccHhhhHHHHHHHHHHHHhcccc
Confidence 32 2233344566788888888899999999888877654 57787 999999999999998642
Q ss_pred ccccccccccCCCCCCCCCCCccc---hhHHHHHHHHHHHHHHHHHHHH----HHH---HhhhccCCCchhHHHHHhhhh
Q psy16876 684 KYNLSNVGKIPIGLPSPQPPPFYL---IPKLMLDGLFISIVAFSINISM----ASI---LAKKKYKIDSNQELLASGVSN 753 (1124)
Q Consensus 684 ~~~v~~vg~ip~glP~~~lP~f~~---~~~ll~~~~~iaiv~~~esi~i----a~~---~~~~g~~~d~nqELiA~GlaN 753 (1124)
.. ...++..|+-.|.+...++.. ....++..+...++.+.+++.+ ++. .+++|+..|.+|.|.+|+++.
T Consensus 217 ~~-~~~~~~~p~~~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t 295 (436)
T COG2252 217 HF-GGLVGAPPSLSPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVAT 295 (436)
T ss_pred cc-cccccCCCCccchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHH
Confidence 21 122444444444443223322 1122334445555555555433 222 224555679999999999999
Q ss_pred hhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy16876 754 IFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAF 833 (1124)
Q Consensus 754 ivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~ 833 (1124)
++|+++|++|++ +|.+|+.+++.|+||+++++++|++++++ +|++|++.+||..+++++|+++|..|+.+.+++
T Consensus 296 ~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~~~v~~i---- 369 (436)
T COG2252 296 VVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALMLSSVKQI---- 369 (436)
T ss_pred HHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHHhhhccC----
Confidence 999999999955 99999999999999999999999999999 599999999999999999999999999766555
Q ss_pred hcCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy16876 834 KESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVV 872 (1124)
Q Consensus 834 r~~~~D~~v~i~tfl~~l~~~l~~GI~vGI~lsll~~v~ 872 (1124)
+|.|+...+++|+++++++++|+|..|++++++.|+.
T Consensus 370 --d~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i 406 (436)
T COG2252 370 --DWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVI 406 (436)
T ss_pred --CchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999985
No 9
>KOG2769|consensus
Probab=99.92 E-value=6.8e-25 Score=247.68 Aligned_cols=171 Identities=26% Similarity=0.244 Sum_probs=147.8
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcc---ccccccccc
Q psy16876 281 NIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPK---LRISNLMRV 357 (1124)
Q Consensus 281 ~~~~~~i~~~v~hp~~~~~~~~~~~~~~~~~~~tkk~rk~~rr~~~~~~~~~k~~~~~~~~~~p~~~k---~~~~n~~~v 357 (1124)
.+.+++|.||++.--|..+-.+...|+|||++|+||.||+ ||..-++|++||+.+|++++|+|+++. |++.+..+|
T Consensus 260 ~~it~~IeHP~~~~PP~e~~~p~~l~vyLTKKErKKLRRQ-~R~ea~KEkqekIrLGL~~ppePKVKiSNLMrVLgsEAi 338 (522)
T KOG2769|consen 260 SIITNLIEHPIPMLPPAENLTPVSLPVYLTKKERKKLRRQ-RRKEARKEKQEKIRLGLEPPPEPKVKLSNLMRVLGSEAI 338 (522)
T ss_pred HHHHHHhcCCcccCCCcccCCCCccceeecHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHhhhccc
Confidence 4667899998665444444444567999999999999999 888888899999999999999999998 999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHhhccccccce-eeeeeechhhh-----hhcccc
Q psy16876 358 LGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEV-HVALRISNLMR-----VLGTEA 431 (1124)
Q Consensus 358 ~~~~a~~dpt~~e~~v~~q~~~r~~~h~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~-----~l~~~a 431 (1124)
.|||+||.-++=...-|++-.++. .++ ||||++|||+|+.+++.||+|-++ |.+|+++||.+ |+..||
T Consensus 339 qDPTK~E~~VR~Q~aeR~kaHe~~--N~a----RKLT~~qkreKk~rKl~ED~st~v~~~V~r~K~l~~p~~rFKve~NA 412 (522)
T KOG2769|consen 339 QDPTKLEAEVRDQMAERQKAHEDE--NAA----RKLTPEQKREKKERKLFEDPSTGVHCSVYRIKNLQNPKKRFKVEMNA 412 (522)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhhh--hhh----hcCCHHHHHHHHHhhhccCCCceEEEEEEEEecccCCccceeeeech
Confidence 999999999987777777774432 222 899999999999999999998777 55579999999 999999
Q ss_pred cCC-------------------chhhHHHHHHHHHHhHHhhHHhhh
Q psy16876 432 VQD-------------------PTKMEAHVRAQMAKRQKDHEEANA 458 (1124)
Q Consensus 432 ~~~-------------------~~~~~~~v~~~~~~R~~~~e~~n~ 458 (1124)
+|+ +.|.+++|+++|.+||+|.|+-|.
T Consensus 413 kql~ltG~~vl~~d~~vvVvEGg~Ka~KkykrLMl~RIkW~e~~~~ 458 (522)
T KOG2769|consen 413 KQLQLTGVCVLHRDMNVVVVEGGPKAQKKYKRLMLKRIKWEEDFEL 458 (522)
T ss_pred hhhceeeeEEEecCCcEEEEecCHHHHHHHHHHHHhhcCchhhhhh
Confidence 999 899999999999999999998743
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.90 E-value=1.3e-24 Score=198.32 Aligned_cols=75 Identities=53% Similarity=1.114 Sum_probs=72.8
Q ss_pred ccCcccccCcCCccccchhhHHHHHHHHHHhhhHHHHHHhcCCCcccchhhhhhhhHhhhhcCCCcccccccccC
Q psy16876 1050 FPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFSV 1124 (1124)
Q Consensus 1050 ~P~~~wl~~y~~~~~~~~D~~ag~tv~~~~iPq~~aya~lag~~p~~Gly~~~~~~~~y~~fg~s~~~~~G~~~v 1124 (1124)
+|+++|+++|+||+++++|++||+|+|++.|||+||||.+||+||++|||++++++++|++||+|||+++||++.
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~ 75 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAA 75 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHH
Confidence 699999999999779999999999999999999999999999999999999999999999999999999999873
No 11
>KOG0236|consensus
Probab=99.85 E-value=1.3e-22 Score=250.09 Aligned_cols=86 Identities=51% Similarity=0.981 Sum_probs=82.2
Q ss_pred hhHHHHHHHhhccCcccccCcCCccccchhhHHHHHHHHHHhhhHHHHHHhcCCCcccchhhhhhhhHhhhhcCCCcccc
Q psy16876 1039 KFKIVNIVLSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHIS 1118 (1124)
Q Consensus 1039 ~~~~~~~~~~~~P~~~wl~~y~~~~~~~~D~~ag~tv~~~~iPq~~aya~lag~~p~~Gly~~~~~~~~y~~fg~s~~~~ 1118 (1124)
+.++.+++.+++|+++|||+|+|++|+.+|++||+|||+++||||||||.+||+||+||||++|+|+++|++||||||++
T Consensus 54 ~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~is 133 (665)
T KOG0236|consen 54 SNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSLSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVS 133 (665)
T ss_pred HHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeeeecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCccc
Confidence 34577888999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q psy16876 1119 MGTFSV 1124 (1124)
Q Consensus 1119 ~G~~~v 1124 (1124)
+||+||
T Consensus 134 iG~~av 139 (665)
T KOG0236|consen 134 IGPFAV 139 (665)
T ss_pred ccHHHH
Confidence 999986
No 12
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.79 E-value=2.6e-18 Score=202.92 Aligned_cols=309 Identities=15% Similarity=0.158 Sum_probs=211.1
Q ss_pred eEEEcCCcchhhhhhhhhhcccccccccccccCCCcccCchheeeec---------------chhhhhhhhccccccccc
Q psy16876 523 VIVVEGGPKQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWEL---------------GSLSVLMSDIMISGFTTG 587 (1124)
Q Consensus 523 ~VvVeGG~kAi~aY~~LM~~rI~W~e~~~~~~~~~~~~n~c~lVweG---------------gv~~r~F~~~vi~g~~t~ 587 (1124)
+..+.|..-++..|.........|++.. ..+++.| ..+.+.||..+.......
T Consensus 67 lp~~~G~sfa~i~~~~~~~~~~~~~~~~------------g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~ 134 (415)
T TIGR00801 67 LPSYLGSSFAFVSPMIAIGSGLGIPAIM------------GALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVML 134 (415)
T ss_pred eeeeecCcHHHHHHHHHHHhccCHHHHH------------HHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHH
Confidence 4444444338888877777777787631 1111111 123667777777888888
Q ss_pred hhhHHHhhhchhhheeeeecccCchhHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccccccccccccchhHH
Q psy16876 588 TAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMI 667 (1124)
Q Consensus 588 aai~i~lsQL~~~lGl~~~~~~~~~~~i~~~~~~~~~l~~~~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~LI 667 (1124)
+++.+....++.+.|.....++ ..+ .++..++++++++++++++.++.++. ++.|+.++
T Consensus 135 IGl~L~~i~l~~~~g~~~~~~~-------------~~~--~~~~~~~vg~~~l~~~vl~~~~~~g~------~~~~aiLi 193 (415)
T TIGR00801 135 IGLSLIPVAVKMAAGGEAAMSS-------------ATY--GSLENLGVAFVVLALIILLNRFGKGF------LKSISILI 193 (415)
T ss_pred HHHHHHHHHHHHhccCCCcccc-------------ccc--CchhhHHHHHHHHHHHHHHHHHHhhH------HHHHHHHH
Confidence 8888888888877665321000 011 13345667777777666655543331 24678999
Q ss_pred HHHHHhhhhhhcccccccccccccccC-CCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hcc----CCC
Q psy16876 668 VIVAGALLSSILDVKHKYNLSNVGKIP-IGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAK-KKY----KID 741 (1124)
Q Consensus 668 ~Ii~gtlia~~lg~~~~~~v~~vg~ip-~glP~~~lP~f~~~~~ll~~~~~iaiv~~~esi~ia~~~~~-~g~----~~d 741 (1124)
++++++++++.+|..+. ..+...| .++|.+..|.+++-...+...+.++++.++|+++.....++ .|+ +.+
T Consensus 194 giv~g~i~a~~lg~~~~---~~v~~~~~~~lP~~~~~g~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~ 270 (415)
T TIGR00801 194 GILVGYILALFMGIVDF---SPVIDAPWFSLPTPFTFGPSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPR 270 (415)
T ss_pred HHHHHHHHHHHcCCccc---hhhccCcccccCCccCCCceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCcc
Confidence 99999999999986432 2223333 24555544422222345566678899999999887776652 344 345
Q ss_pred chhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHH--HHHHHhhcchhHHHHHHHHHH
Q psy16876 742 SNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLY--IGPFFETLPYCVLTSIVIVAV 819 (1124)
Q Consensus 742 ~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llf--l~pll~~IP~avLAaiLI~vg 819 (1124)
.||+++++|++|++||+||++|.+++..+++++..+|++||++++++|++++++.++ +++++.+||.+++||+++ +.
T Consensus 271 ~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~ 349 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFGGFPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VM 349 (415)
T ss_pred ccchHHHhhHHHHHHHhcCCCCCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HH
Confidence 789999999999999999999999988888888899999999999999999999989 999999999999999999 57
Q ss_pred HHHhhhhHHHHHHHhcCcc---hhHHHHHHHHHHHHH---h--------hHHHHHHHHHHHHHH
Q psy16876 820 KGMLNQVKDLKLAFKESYT---EACVWCLTFLSVVLL---D--------VDYGLGIGVLCSLIF 869 (1124)
Q Consensus 820 ~~mi~~~~~i~~l~r~~~~---D~~v~i~tfl~~l~~---~--------l~~GI~vGI~lsll~ 869 (1124)
+.|+. ...++.+++.+.+ +..+...+++..+.. + +..|+.+|.++++++
T Consensus 350 ~~~i~-~~gi~~l~~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~~p~~~~g~~~g~~~ai~L 412 (415)
T TIGR00801 350 FGMIA-ASGIRILIRNKLDNRRNRNIIAASVGLGLGVTGVPDIFGNFPLLLSGIALAGIVAILL 412 (415)
T ss_pred HHHHH-HHHHHHHHhCccCcccceehHHHHHHHHHHHhccHHHHhhCchhcccHHHHHHHHHHH
Confidence 88885 6889999886554 344444444333322 1 235566666666554
No 13
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.78 E-value=5e-18 Score=200.40 Aligned_cols=207 Identities=19% Similarity=0.320 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccccccccchhHHHHHHHhhhhhhcccccccccccccccCC-CCC---CCCCCCc
Q psy16876 630 YVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPI-GLP---SPQPPPF 705 (1124)
Q Consensus 630 ~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip~-glP---~~~lP~f 705 (1124)
+..+.++++++++++++.++.++ .++.|+.++++++++++++.+|..+ ...+++.|. .+| .+..|+|
T Consensus 146 ~~~~~l~l~~l~~~il~~~~~~~------~~~~~aiLi~ivvg~iva~~~g~~~---~~~i~~~~~~~~P~~~~~~~P~f 216 (406)
T TIGR03173 146 PQNLGLALLTLVIILLLNRFGKG------FLRSIAVLLGLVVGTIVAAALGMVD---FSGVAEAPWFALPTPFHFGAPTF 216 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh------HHHHhHHHHHHHHHHHHHHHhcCCC---chhhccCCeeeCCCCCcCCCCee
Confidence 34456666666655554443232 1356889999999999999998643 222332221 233 2456666
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hcc---CCCchhHHHHHhhhhhhhhccCcccccccchhh-HHHhhcCCc
Q psy16876 706 YLIPKLMLDGLFISIVAFSINISMASILAK-KKY---KIDSNQELLASGVSNIFASFFSCIPFASSLSRS-LVQLQVGGK 780 (1124)
Q Consensus 706 ~~~~~ll~~~~~iaiv~~~esi~ia~~~~~-~g~---~~d~nqELiA~GlaNivgglfGg~P~t~s~srS-av~~~sGar 780 (1124)
+. ..+...+.+++++++|++......++ .++ +.+.|||++++|++|+++|+|||+|.|+ |+++ +++..+|++
T Consensus 217 ~~--~~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~~~~tg~~ 293 (406)
T TIGR03173 217 DL--VAILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGLVQLTGVK 293 (406)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcc-hhhhHHHHHHhCCC
Confidence 43 23445567888899998877666542 233 3557899999999999999999999774 6665 566779999
Q ss_pred ccchhHHHHHHHHHHHHH--HHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcch---hHHHHHHHHHH
Q psy16876 781 TQLASGVSCVLLVLILLY--IGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTE---ACVWCLTFLSV 850 (1124)
Q Consensus 781 Trlagivtgvl~ll~llf--l~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D---~~v~i~tfl~~ 850 (1124)
||++++++|++++++.++ +++++++||.+++|+++++ .+.|+. ...++.+.+.+++| .++.-++++..
T Consensus 294 sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~-~~~~i~-~~g~~~l~~~~~~~~rn~~i~g~~~~~g 366 (406)
T TIGR03173 294 SRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV-MFGMVA-ASGIRILSKVDFDRRRNLLIVAVSLGLG 366 (406)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHH-HHHHHHHHhCcccCcceehhhHHHHHHH
Confidence 999999999999888776 8999999999999998885 788886 67888887766553 44444444443
No 14
>PRK10720 uracil transporter; Provisional
Probab=99.75 E-value=2.7e-17 Score=194.62 Aligned_cols=236 Identities=15% Similarity=0.236 Sum_probs=163.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhccccccccccccccchhHHHHHHHhhhhhhccccccccccccccc-CCCCCCCCCCCcc
Q psy16876 628 TNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKI-PIGLPSPQPPPFY 706 (1124)
Q Consensus 628 ~~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~LI~Ii~gtlia~~lg~~~~~~v~~vg~i-p~glP~~~lP~f~ 706 (1124)
.++..++++++++++++++.++.++ + ++..+.++++++|+++++++|..+ +..++.. +.++|.+..|+|+
T Consensus 153 ~~~~~~~lalv~l~iil~~~~~~kg-~-----~~~~~iLigIvvG~ila~~lG~~d---~~~v~~a~~~~lP~~~~P~fd 223 (428)
T PRK10720 153 PDSKTIIISMVTLAVTVLGSVLFRG-F-----LAIIPILIGVLVGYALSFAMGMVD---TTPIIEAHWFALPTFYTPRFE 223 (428)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcc-H-----HHHhHHHHHHHHHHHHHHHhcCCC---HHHhhcCccccCCCCCCCcCc
Confidence 3456677888887777765443332 1 123346999999999999998642 3344422 3567777778776
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh----hh-ccCCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcc
Q psy16876 707 LIPKLMLDGLFISIVAFSINISMASILA----KK-KYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKT 781 (1124)
Q Consensus 707 ~~~~ll~~~~~iaiv~~~esi~ia~~~~----~~-g~~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarT 781 (1124)
.. .+...+.++++.++|++....... ++ .++.|.||+++++|++|++||+||++|.+++..+..+...+|..+
T Consensus 224 ~~--~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~s 301 (428)
T PRK10720 224 WF--AILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYS 301 (428)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccch
Confidence 42 223445556666778766443332 22 235689999999999999999999999886555555566688888
Q ss_pred cchhHHHHHHHHHHHHH--HHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHh--cCcc---hhHHH-----------
Q psy16876 782 QLASGVSCVLLVLILLY--IGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFK--ESYT---EACVW----------- 843 (1124)
Q Consensus 782 rlagivtgvl~ll~llf--l~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r--~~~~---D~~v~----------- 843 (1124)
|++..++|++++++.++ ++++++.||.+|+||+.+ +.+.|+. ...++.+|+ .++. +..+.
T Consensus 302 r~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~-~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~ 379 (428)
T PRK10720 302 TWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIG-ASGIRVLIESKVDYNKAQNLILTSVILIIGVSGA 379 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHH-HHHHHHHHHccCCCCcccchhHHHHHHHHHHHHH
Confidence 88877778777777754 899999999999999999 6788886 789999965 3432 22311
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcce
Q psy16876 844 CLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQK 876 (1124)
Q Consensus 844 i~tfl~~l~~~l~~GI~vGI~lsll~~v~~~~~ 876 (1124)
..++..++..|+..|.++|+++++++.++|..+
T Consensus 380 ~~~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~ 412 (428)
T PRK10720 380 KVNIGAAELKGMALATIVGIGLSLIFKLISKLR 412 (428)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhccccccc
Confidence 122333344578888999999999988765433
No 15
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=99.71 E-value=4.8e-18 Score=168.70 Aligned_cols=112 Identities=31% Similarity=0.511 Sum_probs=99.4
Q ss_pred EEEEEEeccCCCCcccccccCccchheeEEEEEecCcceEEEcCCcchhhhhhhhhhccccccccccc---ccCC--Ccc
Q psy16876 485 VAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMIK---SNEG--KET 559 (1124)
Q Consensus 485 vav~~I~~L~nps~~fkv~~nA~q~~LtG~~v~~~~~~~VvVeGG~kAi~aY~~LM~~rI~W~e~~~~---~~~~--~~~ 559 (1124)
|.+|+|++|.||+|+|+|+.||+|+.|||+|++.+++++|+||||+++++.|.+||++||+|+++... +++. ...
T Consensus 1 ~~~~~I~~L~~p~~R~kI~~nA~ql~LtG~~~~g~~pgiIvvEG~~k~i~~y~~lmlrri~W~e~~~~~~~~~e~~~~~~ 80 (128)
T PF06544_consen 1 CYVHHIKSLSNPKKRFKIDKNAKQLHLTGFCLPGPKPGIIVVEGGEKSIKEYKKLMLRRIKWNEPKKITVREEEDEEDDS 80 (128)
T ss_pred CEEEEeCcccCHHHHHHHHHHHHHhCCeEEEEEcCCcEEEEEECCHHHHHHHHHHHhceecccccccccccccccccccc
Confidence 57999999999999999999999999999999888999999999999999999999999999775321 1111 124
Q ss_pred cCchheeeecchhhhhhhhccccccccchhhHHHhhh
Q psy16876 560 PNKCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQ 596 (1124)
Q Consensus 560 ~n~c~lVweGgv~~r~F~~~vi~g~~t~aai~i~lsQ 596 (1124)
+|.|.++|+|....+.|+.|.+..|.+...+..++.+
T Consensus 81 ~n~c~~vweg~~~~r~F~~~~~~~~~~~~~~~~~L~~ 117 (128)
T PF06544_consen 81 DNSCSLVWEGTVKKRAFKGFREKECEDESEARKFLRE 117 (128)
T ss_pred CCceeEEEeccccccCCCCceEEeCCCHHHHHHHHHH
Confidence 7999999999999999999999999999998887765
No 16
>PRK11660 putative transporter; Provisional
Probab=99.65 E-value=4.1e-17 Score=200.17 Aligned_cols=77 Identities=31% Similarity=0.572 Sum_probs=70.7
Q ss_pred HhhccCcc-----cccCcCCccccchhhHHHHHHHHHHhhhHHHHHHhcCCCcccchhhhhhhhHhhhhcCCCccccccc
Q psy16876 1047 LSLFPILE-----WLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGT 1121 (1124)
Q Consensus 1047 ~~~~P~~~-----wl~~y~~~~~~~~D~~ag~tv~~~~iPq~~aya~lag~~p~~Gly~~~~~~~~y~~fg~s~~~~~G~ 1121 (1124)
.++.|++. |+++|+++ ++++|++||+|+|++.|||+||||.+||+||+|||||+++|+++|++||||||+++||
T Consensus 7 ~~~~~~~~~~~~~wl~~y~~~-~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp 85 (568)
T PRK11660 7 FSVRPFSALIDACWKEKYTAA-RFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGP 85 (568)
T ss_pred HhhHhhhhHHHHHHHhcCCHH-hhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccCh
Confidence 34445544 99999975 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy16876 1122 FSV 1124 (1124)
Q Consensus 1122 ~~v 1124 (1124)
+|+
T Consensus 86 ~a~ 88 (568)
T PRK11660 86 TAA 88 (568)
T ss_pred hHH
Confidence 973
No 17
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.65 E-value=4.3e-17 Score=199.87 Aligned_cols=73 Identities=47% Similarity=0.949 Sum_probs=70.7
Q ss_pred cCcccccCcCCccccchhhHHHHHHHHHHhhhHHHHHHhcCCCcccchhhhhhhhHhhhhcCCCcccccccccC
Q psy16876 1051 PILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFSV 1124 (1124)
Q Consensus 1051 P~~~wl~~y~~~~~~~~D~~ag~tv~~~~iPq~~aya~lag~~p~~Gly~~~~~~~~y~~fg~s~~~~~G~~~v 1124 (1124)
|+++|+++|+++ ++++|++||+|+|++.|||+||||.+||+||+|||||+++|+++|++||||||+++||+|+
T Consensus 1 p~~~wl~~y~~~-~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~ 73 (563)
T TIGR00815 1 PVLRWLPHYRLK-KFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAV 73 (563)
T ss_pred ChhhhhhhCCHH-HhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHH
Confidence 889999999977 7999999999999999999999999999999999999999999999999999999999873
No 18
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.58 E-value=3.1e-14 Score=165.70 Aligned_cols=276 Identities=17% Similarity=0.245 Sum_probs=191.3
Q ss_pred hhhhhhhhccccccccchhhHHHhhhchhhheeeeecccCchhHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc
Q psy16876 571 SLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHF 650 (1124)
Q Consensus 571 v~~r~F~~~vi~g~~t~aai~i~lsQL~~~lGl~~~~~~~~~~~i~~~~~~~~~l~~~~~~~l~l~~~~lllllil~~~~ 650 (1124)
.+.|.||..+......-+++...-..++.+.|.....+. -...+...++++++++++++++.+++
T Consensus 129 ~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~---------------~~~~~~~~l~la~~tl~~il~~~~f~ 193 (451)
T COG2233 129 RLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGN---------------PDFGSLENLGLALVTLLIILLINRFG 193 (451)
T ss_pred HHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCC---------------cccCchhHHHHHHHHHHHHHHHHHHh
Confidence 677888888888888888888887778887776522110 01123345777778777777777766
Q ss_pred ccccccccccccchhHHHHHHHhhhhhhcccccccccccccccCC-CCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Q psy16876 651 KSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPI-GLPSPQPPPFYLIPKLMLDGLFISIVAFSINISM 729 (1124)
Q Consensus 651 ~~~l~k~~~~~IP~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip~-glP~~~lP~f~~~~~ll~~~~~iaiv~~~esi~i 729 (1124)
++.+ +.-+.++++++|+++++++|.. +++.+.+.|. .+|.+..+.+.+-...+...+.++++.++|++..
T Consensus 194 ~g~~------~~i~ILiGlv~G~~la~~~G~v---df~~v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~ 264 (451)
T COG2233 194 KGFL------RRIPILIGLVVGYLLALFMGMV---DFSGVAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGD 264 (451)
T ss_pred hhHH------HHHHHHHHHHHHHHHHHHhCCc---CccccccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhh
Confidence 6533 2346799999999999999953 3333444331 3455544433333345566778899999998654
Q ss_pred H----HHHhhhcc-CCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHH--HHHH
Q psy16876 730 A----SILAKKKY-KIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLY--IGPF 802 (1124)
Q Consensus 730 a----~~~~~~g~-~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llf--l~pl 802 (1124)
- +...++.+ +.+..|.+++||++++++|+||++|.|+...+..+-..+|.+||+...++|++.+++.++ ++.+
T Consensus 265 i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al 344 (451)
T COG2233 265 ITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGAL 344 (451)
T ss_pred hhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHH
Confidence 3 33333333 478899999999999999999999988666666666779999999999999998888876 8899
Q ss_pred HhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcc----hhHHHHHHHHHHHHHh----------------hHHHHHHH
Q psy16876 803 FETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYT----EACVWCLTFLSVVLLD----------------VDYGLGIG 862 (1124)
Q Consensus 803 l~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~----D~~v~i~tfl~~l~~~----------------l~~GI~vG 862 (1124)
+..||.+|+||+.++ .|+|+. ...++.+-+.+.. +.++..+++...+..+ +..||+.|
T Consensus 345 ~~sIP~pVlGGa~iv-mFG~Ia-~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~~p~~~~~l~~sGia~g 422 (451)
T COG2233 345 IQSIPSPVLGGAMLV-LFGMIA-ASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQLPAWLRPLLSSGIALG 422 (451)
T ss_pred HHhCChhhhhHHHHH-HHHHHH-HHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhhCcHHHHHHHhccHHHH
Confidence 999999999999998 688986 6778776664333 2333322222222200 34577777
Q ss_pred HHHHHHHHHh
Q psy16876 863 VLCSLIFVVV 872 (1124)
Q Consensus 863 I~lsll~~v~ 872 (1124)
.+.++++.+.
T Consensus 423 ~i~AIvLNll 432 (451)
T COG2233 423 TLTAIVLNLL 432 (451)
T ss_pred HHHHHHHHHh
Confidence 7777777664
No 19
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.53 E-value=3.2e-15 Score=181.25 Aligned_cols=76 Identities=38% Similarity=0.677 Sum_probs=72.8
Q ss_pred HhhccCcccccCcCCccccchhhHHHHHHHHHHhhhHHHHHHhcCCCcccchhhhhhhhHhhhhcCCCccccccccc
Q psy16876 1047 LSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFS 1123 (1124)
Q Consensus 1047 ~~~~P~~~wl~~y~~~~~~~~D~~ag~tv~~~~iPq~~aya~lag~~p~~Gly~~~~~~~~y~~fg~s~~~~~G~~~ 1123 (1124)
.+++|...|.+.|..+ |+++|++||+|||++++|++||||.+||+||++|||++|+++++|++||+||++++||++
T Consensus 4 ~~~~~~~~~~~~~~~~-~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~ 79 (554)
T COG0659 4 RSEIPTLKWLPYYFRS-WLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTG 79 (554)
T ss_pred hhhccHHHhccccchh-hhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccch
Confidence 4678999999999954 899999999999999999999999999999999999999999999999999999999997
No 20
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.51 E-value=1.4e-13 Score=161.96 Aligned_cols=300 Identities=18% Similarity=0.209 Sum_probs=162.1
Q ss_pred cCcceEEEcC-Ccchhhhhhhhhhc----ccccccccccccCCCcccCchheeee----------c--chhhhhhhhccc
Q psy16876 519 KDCNVIVVEG-GPKQQSKFKRLMMH----RIKWEEDMIKSNEGKETPNKCVLVWE----------L--GSLSVLMSDIMI 581 (1124)
Q Consensus 519 ~~~~~VvVeG-G~kAi~aY~~LM~~----rI~W~e~~~~~~~~~~~~n~c~lVwe----------G--gv~~r~F~~~vi 581 (1124)
.+.++.+++| +.+.+..|...... ...|++. .+..++. | +.+.+.||..+.
T Consensus 57 ~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~------------~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~ 124 (389)
T PF00860_consen 57 AGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAA------------LGAVLISGILFILLGLTGLRKRLRRLFPPVVK 124 (389)
T ss_dssp TTT-----EEE-GGGHHHHHGGG-----HHHHHHHH------------HHHHHHHHHHHHHHHTT-SH-HHHHH--HHHH
T ss_pred CCCceecccccchhhhhhhhcccccccchhhchhhh------------hhHHHHHHHHHHHHHHhchHHHHHHHhChhhe
Confidence 5678888999 87877766665553 5555552 2222222 2 366788888888
Q ss_pred cccccchhhHHHhhhchhhheeeeecccCchhHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccccccccccc
Q psy16876 582 SGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFP 661 (1124)
Q Consensus 582 ~g~~t~aai~i~lsQL~~~lGl~~~~~~~~~~~i~~~~~~~~~l~~~~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~ 661 (1124)
..+...+++.+....++...|.....+ + ....+.....+++..+++.+.+..+.++++ +
T Consensus 125 g~v~~~IGl~L~~~~~~~~~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 183 (389)
T PF00860_consen 125 GAVVLLIGLSLAPIGLKNAGGIWGNPD----G-----------LLVGDGKNLGLAVLTLLFILLLSLFLKGFL------R 183 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS---BT----T------------B---HHHHHHHHHHHHHHHHHHHSSSTTT------T
T ss_pred EeeEeeehhhhhhhHhhcccccccccc----c-----------cccccccccccccccchhhhhhhhhhhhhc------c
Confidence 888888888888877777776643210 0 000112223333333333333333322211 2
Q ss_pred cchhHHHHHHHhhhhhhcccccccccccccccC-CCCC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH----H
Q psy16876 662 IPTEMIVIVAGALLSSILDVKHKYNLSNVGKIP-IGLP---SPQPPPFYLIPKLMLDGLFISIVAFSINISMASI----L 733 (1124)
Q Consensus 662 IP~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip-~glP---~~~lP~f~~~~~ll~~~~~iaiv~~~esi~ia~~----~ 733 (1124)
.-+.++++++++++++.+|..+..+. +...| ..+| ++.+|.|+ ...+...+.+.++.++|++..-.. .
T Consensus 184 ~~ailigi~~g~i~~~~~g~~~~~~~--~~~~~~~~~p~~~~~g~p~f~--~~~i~~~~~~~lv~~~es~G~~~a~~~~~ 259 (389)
T PF00860_consen 184 KGAILIGIIAGWIVAAILGVVDFSPS--VSSAPWFSLPSPFPFGWPSFD--PGAILTFLIFALVAMFESIGTIVAVARIA 259 (389)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSSH---HHHS-SS----------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhcccccccCcc--ccccccccccccccccccccc--HHHHHHHHHHHHHHhhhhhhhHHHHHHHh
Confidence 33559999999999999985322220 22222 1222 22333332 233445556677777777654333 3
Q ss_pred hhhcc-CCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhh-cCCcccchhHHHHHHHHHHHHH--HHHHHhhcchh
Q psy16876 734 AKKKY-KIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQ-VGGKTQLASGVSCVLLVLILLY--IGPFFETLPYC 809 (1124)
Q Consensus 734 ~~~g~-~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~-sGarTrlagivtgvl~ll~llf--l~pll~~IP~a 809 (1124)
++..+ ..+.+|.+.++|++|++||+||++|.+ +|++|+..++ +|.++|.++++++++.+++.++ +++++..||.+
T Consensus 260 ~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t-~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~ 338 (389)
T PF00860_consen 260 GKDDPRPPRIRRGLLADGLGTILAGLFGTSPTT-TYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSP 338 (389)
T ss_dssp TS-TCCCCCHHHHHHHHHHHHHHHHHHT---EE-E-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HH
T ss_pred CCCCccchhhcccceeeeeeeeechhhcCCCCc-cccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333 688999999999999999999999866 6666666666 6688888888888887777654 89999999999
Q ss_pred HHHHHHH-HHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHHhhHHHHHHH
Q psy16876 810 VLTSIVI-VAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIG 862 (1124)
Q Consensus 810 vLAaiLI-~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~~l~~GI~vG 862 (1124)
+++|+++ ++|..|+. .++.+ ++.|+......|++.+.+.+.+++..+
T Consensus 339 v~gg~~lv~~g~i~~~---gi~~i---~~~~~~~~r~~~iv~~~l~~g~~i~~~ 386 (389)
T PF00860_consen 339 VIGGPLLVLFGMIMMS---GIRNI---DWVDLDSARNAFIVGLSLPLGLSIAFG 386 (389)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHH---HHTTS-SHHHHHHHHHHHHHHHH----
T ss_pred HhccchHHHHHHHHHH---HhHhh---eecccCccccHHHHHHhHHHHHHHhcc
Confidence 9766655 45666654 44444 344444455566666666666666554
No 21
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.49 E-value=6.9e-13 Score=157.25 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=115.3
Q ss_pred chhHHHHHHHhhhhhhc----ccccccccccc-cccCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Q psy16876 663 PTEMIVIVAGALLSSIL----DVKHKYNLSNV-GKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAK-K 736 (1124)
Q Consensus 663 P~~LI~Ii~gtlia~~l----g~~~~~~v~~v-g~ip~glP~~~lP~f~~~~~ll~~~~~iaiv~~~esi~ia~~~~~-~ 736 (1124)
-+.++++++|+++++.+ |.....++..+ +....++|++..|.|+. ..+...+.++++.++|++......+. .
T Consensus 197 ~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~lP~~~~p~f~~--~~il~~~~~~lv~~~esiG~~~a~~~~~ 274 (429)
T TIGR03616 197 LLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGLPNFHTPVFNA--NAMLLIAPVALILVAENLGHFKAVAGMT 274 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCccccCCcCCCceEcH--HHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 36799999999998764 32112234433 22223567777776653 33445566678888888776555442 2
Q ss_pred ccCC--CchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHH--HHHHHhhcchhHHH
Q psy16876 737 KYKI--DSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLY--IGPFFETLPYCVLT 812 (1124)
Q Consensus 737 g~~~--d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llf--l~pll~~IP~avLA 812 (1124)
+++. +.+|+++++|++|++||+||++|.+.+..+..+...+|..+|.....+|++++++.++ ++.+++.||.+|+|
T Consensus 275 ~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlg 354 (429)
T TIGR03616 275 GRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLG 354 (429)
T ss_pred CCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3333 4589999999999999999999977665555555567777777766666665555533 45599999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q psy16876 813 SIVIVAVKGMLNQVKDLKLAF 833 (1124)
Q Consensus 813 aiLI~vg~~mi~~~~~i~~l~ 833 (1124)
|+++ +.+.|+. ...++ +|
T Consensus 355 G~~i-~~fg~i~-~~Gi~-~l 372 (429)
T TIGR03616 355 GASI-VVFGLIA-VAGAR-IW 372 (429)
T ss_pred HHHH-HHHHHHH-HHHHH-HH
Confidence 9999 5788886 67887 44
No 22
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.46 E-value=2.2e-12 Score=152.23 Aligned_cols=241 Identities=15% Similarity=0.190 Sum_probs=155.0
Q ss_pred chhhhhhhhccccccccchhhHHHhhhchhhheeeeecccCchhHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhc
Q psy16876 570 GSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDH 649 (1124)
Q Consensus 570 gv~~r~F~~~vi~g~~t~aai~i~lsQL~~~lGl~~~~~~~~~~~i~~~~~~~~~l~~~~~~~l~l~~~~lllllil~~~ 649 (1124)
+.+.|+||..+......-+++..+-.-++.+.|...... + ..++.+...+.++++++++++.+..+
T Consensus 124 ~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~-~-------------~~~~~~~~~~~~a~~~l~~il~~~~~ 189 (433)
T PRK11412 124 HRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIA-D-------------PNGKIQLPPFGLSVAVMCLVLAMIIF 189 (433)
T ss_pred HHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCc-c-------------cccccchHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655566666555555555411100 0 01111223344555555555544443
Q ss_pred cccccccccccccchhHHHHHHHhhhhh-hcccccccccccccccCC-CCCCCCCCC-ccchhHHHHHHHHHHHHHHHHH
Q psy16876 650 FKSKIQKNISFPIPTEMIVIVAGALLSS-ILDVKHKYNLSNVGKIPI-GLPSPQPPP-FYLIPKLMLDGLFISIVAFSIN 726 (1124)
Q Consensus 650 ~~~~l~k~~~~~IP~~LI~Ii~gtlia~-~lg~~~~~~v~~vg~ip~-glP~~~lP~-f~~~~~ll~~~~~iaiv~~~es 726 (1124)
.++.+ +.-+.++++++|++++. .+|. +...+++.+. .+| |.+|. |+. ..+...+.++++..+|+
T Consensus 190 ~~g~~------~~~svLiGiv~G~v~a~~~~g~----d~~~v~~a~w~~~p-fG~P~~F~~--~~il~~~~~~lv~~~e~ 256 (433)
T PRK11412 190 LPQRI------ARYSLLVGTIVGWILWAFCFPS----SHSLSGELHWQWFP-LGSGGALEP--GIILTAVITGLVNISNT 256 (433)
T ss_pred hhhHH------HHHHHHHHHHHHHHHHHHHhCC----CcchhccCCceeec-CCCCCccCH--HHHHHHHHHHHHHHHHH
Confidence 33321 34467999999999854 5655 2223333322 222 55664 653 23455566677777776
Q ss_pred HHHH----HHHhhhcc-CCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHH--H
Q psy16876 727 ISMA----SILAKKKY-KIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLY--I 799 (1124)
Q Consensus 727 i~ia----~~~~~~g~-~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llf--l 799 (1124)
++.- +..+++.. +.+.+|.+.++|++|+++|+||++|.++...+..+-..+|.++|....++|++++++.+| +
T Consensus 257 iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~ 336 (433)
T PRK11412 257 YGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPAL 336 (433)
T ss_pred HHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5533 33322222 457899999999999999999999987666666777779999999999999999998877 8
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcch
Q psy16876 800 GPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTE 839 (1124)
Q Consensus 800 ~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D 839 (1124)
+.++..||.+|+||++++ .+.|+. ...++.+.+.++++
T Consensus 337 ~alia~IP~pVlGg~~~~-~Fg~I~-~~Gi~~l~~~~~~~ 374 (433)
T PRK11412 337 TRLFCSIPLPVSSAVMLV-SYLPLL-GSALVFSQQITFTA 374 (433)
T ss_pred HHHHHhCCHHHHHHHHHH-HHHHHH-HHHHHHHHhCCCCc
Confidence 889999999999999988 577775 56777777666544
No 23
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.26 E-value=9.7e-12 Score=121.28 Aligned_cols=96 Identities=28% Similarity=0.389 Sum_probs=83.2
Q ss_pred ccCCCcEEEEEEecceeecchHHHHHHHHhhhccCC------CCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEE
Q psy16876 900 AIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSE------PYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISL 973 (1124)
Q Consensus 900 ~~~~~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~------~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L 973 (1124)
.+..+++.+++++|+|+|+|++++++.+.+...... ...+.|||||++|++||+||+++|.++.++++.+|+++
T Consensus 4 ~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~ 83 (117)
T PF01740_consen 4 IETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQL 83 (117)
T ss_dssp EEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEE
T ss_pred eEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 345678999999999999999999999998753221 23589999999999999999999999999999999999
Q ss_pred EEEecCchhhhhhcCccccccc
Q psy16876 974 HIVKLLEPVKQVNSHPLLNQDD 995 (1124)
Q Consensus 974 ~l~~l~~~v~~vl~~~~l~~~~ 995 (1124)
+|+++++.+++.|+...+...+
T Consensus 84 ~l~~~~~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 84 VLVGLNPDVRRILERSGLIDFI 105 (117)
T ss_dssp EEESHHHHHHHHHHHTTGHHHS
T ss_pred EEEECCHHHHHHHHHcCCChhc
Confidence 9999999999999888544333
No 24
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.22 E-value=2.9e-11 Score=114.98 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=79.4
Q ss_pred CCCcEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCch
Q psy16876 902 DVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEP 981 (1124)
Q Consensus 902 ~~~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~ 981 (1124)
..+++.+++++|+|||+|++.|++.+..... .+..+.|||||+.|++||+||+.+|.+++++++++|+++.+++++++
T Consensus 5 ~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~--~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~ 82 (100)
T cd06844 5 KVDDYWVVRLEGELDHHSVEQFKEELLHNIT--NVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPA 82 (100)
T ss_pred EECCEEEEEEEEEecHhhHHHHHHHHHHHHH--hCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHH
Confidence 3568999999999999999999999875432 23568999999999999999999999999999999999999999999
Q ss_pred hhhhhcCcccc
Q psy16876 982 VKQVNSHPLLN 992 (1124)
Q Consensus 982 v~~vl~~~~l~ 992 (1124)
++++++...+.
T Consensus 83 v~~~l~~~gl~ 93 (100)
T cd06844 83 VRITLTESGLD 93 (100)
T ss_pred HHHHHHHhCch
Confidence 99999887543
No 25
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.21 E-value=3.3e-11 Score=115.54 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCcEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchh
Q psy16876 903 VPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPV 982 (1124)
Q Consensus 903 ~~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v 982 (1124)
.+++.+++++|+|+|+|++.+++.+.+... .++.+.+||||++|++||+||+.+|..+.++++++|+++.++++++++
T Consensus 6 ~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~--~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v 83 (106)
T TIGR02886 6 KGDVLIVRLSGELDHHTAERVRRKIDDAIE--RRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAV 83 (106)
T ss_pred ECCEEEEEEecccchhhHHHHHHHHHHHHH--hCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 467999999999999999999999987542 235689999999999999999999999999999999999999999999
Q ss_pred hhhhcCccccccc
Q psy16876 983 KQVNSHPLLNQDD 995 (1124)
Q Consensus 983 ~~vl~~~~l~~~~ 995 (1124)
+++|+...+.+.+
T Consensus 84 ~~~l~~~gl~~~~ 96 (106)
T TIGR02886 84 KRLFELSGLFKII 96 (106)
T ss_pred HHHHHHhCCceEE
Confidence 9999988666555
No 26
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.16 E-value=7.1e-11 Score=113.84 Aligned_cols=89 Identities=15% Similarity=0.265 Sum_probs=79.0
Q ss_pred CCcEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchh
Q psy16876 903 VPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPV 982 (1124)
Q Consensus 903 ~~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v 982 (1124)
.+++.+++++|+|||++++.+++.+..... ....+.||+||++|++||+||+++|.++.+.++.+|+++.++++++++
T Consensus 8 ~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~--~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v 85 (109)
T cd07041 8 WDGVLVLPLIGDLDDERAEQLQERLLEAIS--RRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEV 85 (109)
T ss_pred eCCEEEEeeeeeECHHHHHHHHHHHHHHHH--HcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 357899999999999999999998765431 235679999999999999999999999999999999999999999999
Q ss_pred hhhhcCccccc
Q psy16876 983 KQVNSHPLLNQ 993 (1124)
Q Consensus 983 ~~vl~~~~l~~ 993 (1124)
+++|+.+.+..
T Consensus 86 ~~~l~~~gl~~ 96 (109)
T cd07041 86 AQTLVELGIDL 96 (109)
T ss_pred HHHHHHhCCCh
Confidence 99999886654
No 27
>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa [].
Probab=99.02 E-value=6.3e-10 Score=119.87 Aligned_cols=101 Identities=18% Similarity=0.169 Sum_probs=87.0
Q ss_pred ccccccccccccccCCCCCCCCCCC--CCCCccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcc---ccccc
Q psy16876 279 ENNIKTSAITNLVEHPIQMKPPSDM--AKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPK---LRISN 353 (1124)
Q Consensus 279 ~~~~~~~~i~~~v~hp~~~~~~~~~--~~~~~~~~~~tkk~rk~~rr~~~~~~~~~k~~~~~~~~~~p~~~k---~~~~n 353 (1124)
+....+.||+|+|+.+.+.....+. ..++|||+++.||.||+ ||+.+++|+++|+++|+++.|||+++. |++..
T Consensus 109 ~~~~It~~VeHPv~i~~p~~~~~~~~~~~~~~LTkkErKKlRr~-rR~e~~kEkq~kIrlGL~ppP~PKVKlSNLMrVL~ 187 (223)
T PF08572_consen 109 EESSITNYVEHPVPIKPPYEKNKPPPVVPPVYLTKKERKKLRRQ-RRQEKQKEKQDKIRLGLEPPPPPKVKLSNLMRVLG 187 (223)
T ss_pred chhhhhhhhhCCCCCCCccccccccccccCcccChHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHhh
Confidence 3445566999999999988833333 37999999999999999 999999999999999999999999999 88888
Q ss_pred cccccccccccCCchhhHHHHHHHHHH
Q psy16876 354 LMRVLGTEAVQDPTKMEAHVRAQMAKR 380 (1124)
Q Consensus 354 ~~~v~~~~a~~dpt~~e~~v~~q~~~r 380 (1124)
...|+|||+|+.-|+-+.+=|.+-.++
T Consensus 188 ~eAV~DPT~vE~~Vr~Q~eeR~~~He~ 214 (223)
T PF08572_consen 188 NEAVQDPTKVEAKVRKQMEERQQKHEE 214 (223)
T ss_pred cchhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999887777776554
No 28
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=98.93 E-value=4.4e-09 Score=100.15 Aligned_cols=91 Identities=25% Similarity=0.426 Sum_probs=79.3
Q ss_pred CCCcEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCch
Q psy16876 902 DVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEP 981 (1124)
Q Consensus 902 ~~~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~ 981 (1124)
..+++.+++++|+|+|.|++.+.+.+.+... ..+..+.+||||+++++||+||++.|.++.+.++.+|+++.|++++++
T Consensus 6 ~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~-~~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~~l~~~~~~ 84 (107)
T cd07042 6 EPPGVLIYRIDGPLFFGNAEYFKDRLLRLVD-EDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYLAGLNPQ 84 (107)
T ss_pred cCCCEEEEEecCceEeehHHHHHHHHHHHhc-cCCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEEEEecCCHH
Confidence 3457999999999999999999999987632 222247899999999999999999999999999999999999999999
Q ss_pred hhhhhcCccccc
Q psy16876 982 VKQVNSHPLLNQ 993 (1124)
Q Consensus 982 v~~vl~~~~l~~ 993 (1124)
+.+++....+.+
T Consensus 85 ~~~~l~~~g~~~ 96 (107)
T cd07042 85 VRELLERAGLLD 96 (107)
T ss_pred HHHHHHHcCcHH
Confidence 999998885443
No 29
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=98.90 E-value=4.8e-09 Score=100.67 Aligned_cols=92 Identities=23% Similarity=0.289 Sum_probs=82.6
Q ss_pred CCcEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchh
Q psy16876 903 VPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPV 982 (1124)
Q Consensus 903 ~~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v 982 (1124)
.+++.++++.|+++|.|+..+.+.+..... .+..+.|++||+.+.+||+||+..|.++.+.++++|+++.++++++++
T Consensus 10 ~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~--~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~~~~ 87 (108)
T TIGR00377 10 QEGVVIVRLSGELDAHTAPLLREKVTPAAE--RTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVSPRV 87 (108)
T ss_pred ECCEEEEEEecccccccHHHHHHHHHHHHH--hcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 457999999999999999999999987542 246788999999999999999999999999999999999999999999
Q ss_pred hhhhcCcccccccc
Q psy16876 983 KQVNSHPLLNQDDK 996 (1124)
Q Consensus 983 ~~vl~~~~l~~~~~ 996 (1124)
.++|+...+...++
T Consensus 88 ~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 88 ARLLDITGLLRIIP 101 (108)
T ss_pred HHHHHHhChhheec
Confidence 99999887766665
No 30
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=98.81 E-value=1.6e-08 Score=94.91 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=79.3
Q ss_pred CcEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchhh
Q psy16876 904 PGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVK 983 (1124)
Q Consensus 904 ~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v~ 983 (1124)
+++.++++.|+|+|.+++.+.+.+.+... ...+.+++||+++.++|+||+..|.++.+.++.+|+++.+++++++++
T Consensus 7 ~~~~ii~l~G~l~~~~~~~~~~~~~~~~~---~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~ 83 (99)
T cd07043 7 GGVLVVRLSGELDAATAPELREALEELLA---EGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVR 83 (99)
T ss_pred CCEEEEEEeceecccchHHHHHHHHHHHH---cCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHH
Confidence 47899999999999999999999877532 225789999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccccc
Q psy16876 984 QVNSHPLLNQDDK 996 (1124)
Q Consensus 984 ~vl~~~~l~~~~~ 996 (1124)
++++...+...+.
T Consensus 84 ~~l~~~gl~~~~~ 96 (99)
T cd07043 84 RVLELTGLDRLFP 96 (99)
T ss_pred HHHHHhCcceeee
Confidence 9998886654443
No 31
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=98.66 E-value=1.5e-06 Score=101.30 Aligned_cols=196 Identities=19% Similarity=0.275 Sum_probs=119.3
Q ss_pred cchhHHHHHHHhhhhhhcccccccccccccccCCCCCCCCCCCccchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCC
Q psy16876 662 IPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFS-INISMASILAKKKYKI 740 (1124)
Q Consensus 662 IP~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip~glP~~~lP~f~~~~~ll~~~~~iaiv~~~-esi~ia~~~~~~g~~~ 740 (1124)
.++.++++++|+++++..|..+..+ +.. ....|.+..|+|+. ...+..++.+.++.+. .++---......||+.
T Consensus 180 r~avl~aLlvG~iva~~~G~~~~~~---~~~-~l~~p~~~~P~fs~-~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~ 254 (395)
T TIGR00843 180 RYAMIAALICGIAFSFALGDMNPTD---LDF-KIALPQFIAPDFSF-AHSLNLALPLFLVSLAGQFAPGIAALKAAGYNA 254 (395)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCccc---ccc-ccccceeeCCCCCH-HHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCC
Confidence 3578999999999998887532111 111 11235566788853 2233333333333332 1110011222468889
Q ss_pred CchhHHHHHhhhhhhhhccCcccccccchhhHHH-----hhcCCcccchhHHHHHHHHHHHHH---HHHHHhhcchhHHH
Q psy16876 741 DSNQELLASGVSNIFASFFSCIPFASSLSRSLVQ-----LQVGGKTQLASGVSCVLLVLILLY---IGPFFETLPYCVLT 812 (1124)
Q Consensus 741 d~nqELiA~GlaNivgglfGg~P~t~s~srSav~-----~~sGarTrlagivtgvl~ll~llf---l~pll~~IP~avLA 812 (1124)
+.++-+.+.|++|+++++|||++.+-+-.-+++. ...++|+-.++++.|++.+++.+| +..++..+|...++
T Consensus 255 p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic~G~~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~ 334 (395)
T TIGR00843 255 PAKPIIAAAGLAALFAAFAGGISIGIAAITAAICMGKDAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIA 334 (395)
T ss_pred CchHHHHHHHHHHHHHhccCCchhhhhHHhHHHhcCcccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 9999999999999999999999943333333332 234788899999999999988877 56788999998776
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHH----Hh---hHHHHHHHHHH
Q psy16876 813 SIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVL----LD---VDYGLGIGVLC 865 (1124)
Q Consensus 813 aiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~----~~---l~~GI~vGI~l 865 (1124)
++-=.+.++-+. ..+..-.+ +..+-...++||+++.- +| -.+|+++|++.
T Consensus 335 ~laGlAll~~~~--~~l~~a~~-~~~~r~~a~~tflvtaSg~~~~gigaafWgl~~G~~~ 391 (395)
T TIGR00843 335 ALAGLALLGAIA--GNIKIALH-EDQERDAALIAFLATASGLHFLGIGSAFWGLCAGGLA 391 (395)
T ss_pred HHHHHHHHHHHH--HHHHHHhc-CcchhHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 654444444332 22322222 34444566777777653 22 24666666544
No 32
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=98.51 E-value=2.9e-07 Score=90.27 Aligned_cols=87 Identities=14% Similarity=0.250 Sum_probs=77.6
Q ss_pred EEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchhhhhh
Q psy16876 907 VILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVN 986 (1124)
Q Consensus 907 ~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v~~vl 986 (1124)
.++.+.|.|+..++..+++.+.+... ....+.+|||++.|++||++|++.|...++.++..|.++.+++++|.+.+.+
T Consensus 15 ~vl~l~G~lD~~~a~~~~e~~~~~~~--~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~ 92 (117)
T COG1366 15 LVLPLIGELDAARAPALKETLLEVIA--ASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTL 92 (117)
T ss_pred EEEEeeEEEchHHHHHHHHHHHHHHh--cCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 68999999999999999999886532 3345569999999999999999999999999999999999999999999999
Q ss_pred cCccccccc
Q psy16876 987 SHPLLNQDD 995 (1124)
Q Consensus 987 ~~~~l~~~~ 995 (1124)
+.+.++..|
T Consensus 93 ~~~gl~~~~ 101 (117)
T COG1366 93 ELTGLDKSF 101 (117)
T ss_pred HHhCchhhc
Confidence 998776555
No 33
>PF13466 STAS_2: STAS domain
Probab=98.38 E-value=9.5e-07 Score=80.30 Aligned_cols=78 Identities=13% Similarity=0.256 Sum_probs=70.6
Q ss_pred EEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchhhhhhcC
Q psy16876 909 LRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSH 988 (1124)
Q Consensus 909 vrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v~~vl~~ 988 (1124)
+++.|.|++.++..+.+.+.+.. .. .+.|+||+++|.+||++|+..|..+.+.++.+|..+.+.++++.++++++.
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~---~~-~~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~~~~~ll~~ 76 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALL---AS-GRPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSPALRRLLEL 76 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHH---cC-CCeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence 47899999999999999999864 22 278999999999999999999999999999999999999999999999876
Q ss_pred cc
Q psy16876 989 PL 990 (1124)
Q Consensus 989 ~~ 990 (1124)
..
T Consensus 77 ~g 78 (80)
T PF13466_consen 77 LG 78 (80)
T ss_pred hC
Confidence 64
No 34
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.32 E-value=3.6e-05 Score=97.42 Aligned_cols=113 Identities=20% Similarity=0.235 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc----cCCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhc---------
Q psy16876 711 LMLDGLFISIVAFSINISMASILAKKK----YKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQV--------- 777 (1124)
Q Consensus 711 ll~~~~~iaiv~~~esi~ia~~~~~~g----~~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~s--------- 777 (1124)
.++.++.++++.|++.-..+...++.. ...-.+-.|+..|+.|.++|+||=-+.+++..+|.....+
T Consensus 657 A~iPAlll~ILiFmD~nIts~iv~~~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~ 736 (900)
T TIGR00834 657 AALPALLVFILIFMEQQITTLIVSKKERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASA 736 (900)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhcCccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccC
Confidence 356677788888887765555554211 1122466799999999999999988888887777665542
Q ss_pred -C-------C-cccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhh
Q psy16876 778 -G-------G-KTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLN 824 (1124)
Q Consensus 778 -G-------a-rTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~ 824 (1124)
| + -+|+++++.++++.+++ +++|++.+||++||.|+.++.|+.-+.
T Consensus 737 ~Ge~~~i~~V~EQRvT~ll~~lLiglsv-~~~PvL~~IP~aVL~GvFlYMGv~SL~ 791 (900)
T TIGR00834 737 PGEKAQIQEVREQRVTGLLVAVLVGLSI-LMEPILKRIPLAVLFGIFLYMGVTSLS 791 (900)
T ss_pred CCCCCccceeEeeehHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 2 1 36899999998887766 689999999999999999999987665
No 35
>KOG1172|consensus
Probab=98.22 E-value=5.9e-05 Score=93.34 Aligned_cols=160 Identities=16% Similarity=0.263 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhc-------
Q psy16876 709 PKLMLDGLFISIVAFSINISMASILAKKKY----KIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQV------- 777 (1124)
Q Consensus 709 ~~ll~~~~~iaiv~~~esi~ia~~~~~~g~----~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~s------- 777 (1124)
...+..++.++++.|++.-..+...+++.+ -.-..=.|+-+|+.|+++|+||=-+.+++..+|-...++
T Consensus 631 ~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~ 710 (876)
T KOG1172|consen 631 FAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESET 710 (876)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcc
Confidence 334566778888888887666666653211 122345699999999999999988888888888776653
Q ss_pred ----------CC-cccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhh---hHHHHHHH----------
Q psy16876 778 ----------GG-KTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQ---VKDLKLAF---------- 833 (1124)
Q Consensus 778 ----------Ga-rTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~---~~~i~~l~---------- 833 (1124)
|+ -.|++|++.++++.++. ++.|++..||++||-|+..+.|+.-+.. |..+..++
T Consensus 711 ~apge~~~i~~V~EQRvtgll~~llvgls~-~~~pvL~~IP~~VL~GvFlYMgv~SL~Gnqf~eRl~Llf~p~k~~p~~~ 789 (876)
T KOG1172|consen 711 SAPGEQPQIVGVREQRVTGLLQFLLVGLSV-LLLPVLKLIPMPVLYGVFLYMGVSSLPGNQFFERLLLLFMPPKHRPDTL 789 (876)
T ss_pred cCCCCccccccchhhhhHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHhhccCCccHHHHHHHHHcCCcccCCCcc
Confidence 22 25899999999998554 7899999999999999999998876642 22222222
Q ss_pred ---hcCcchhHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHH
Q psy16876 834 ---KESYTEACVWCLTFLSVVLLDVDYGLG----IGVLCSLIFVV 871 (1124)
Q Consensus 834 ---r~~~~D~~v~i~tfl~~l~~~l~~GI~----vGI~lsll~~v 871 (1124)
+++. ..+.+.|.+-.+.+.+.++|- +||++=+++++
T Consensus 790 ylrhv~~--r~vhlFT~~Ql~~l~ll~~i~~~~~asi~FP~~ll~ 832 (876)
T KOG1172|consen 790 YLRHVPF--RRVHLFTLIQLLCLALLWAIKWSPVASIIFPLMLLL 832 (876)
T ss_pred ceeecch--hhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 1111 345556666666666666663 66776655554
No 36
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=98.20 E-value=7.6e-05 Score=85.87 Aligned_cols=196 Identities=21% Similarity=0.300 Sum_probs=121.8
Q ss_pred hhHHHHHHHhhhhhhcccccccccccccccCCCCCCCCCCCccchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCc
Q psy16876 664 TEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFS-INISMASILAKKKYKIDS 742 (1124)
Q Consensus 664 ~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip~glP~~~lP~f~~~~~ll~~~~~iaiv~~~-esi~ia~~~~~~g~~~d~ 742 (1124)
..+.++++|.++++..|..+. ..+. .....|.+..|.|+. ..++..++.+.++.+. +++---..+...||++..
T Consensus 166 av~~al~~g~~~a~~~g~~~~---~~~~-~~~~~p~~~~P~Fs~-~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~ 240 (378)
T PF03594_consen 166 AVLAALVAGVAVAALTGQLHP---SALQ-LSLAHPVFTTPEFSW-SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPV 240 (378)
T ss_pred HHHHHHHHHHHHHHhcCCCCc---cccc-cccceeEEECCcccH-HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCc
Confidence 456677777777777664321 1111 111235667888874 3444555555555553 222212233457999999
Q ss_pred hhHHHHHhhhhhhhhccCcccccccchhhHHHhhc--C---CcccchhHHHHHHHHHHHHH---HHHHHhhcchhHHHHH
Q psy16876 743 NQELLASGVSNIFASFFSCIPFASSLSRSLVQLQV--G---GKTQLASGVSCVLLVLILLY---IGPFFETLPYCVLTSI 814 (1124)
Q Consensus 743 nqELiA~GlaNivgglfGg~P~t~s~srSav~~~s--G---arTrlagivtgvl~ll~llf---l~pll~~IP~avLAai 814 (1124)
|.-+...|+++++.++|||.+.+-+-.-.++.... + .|-=.+++++|++.+++.+| +..++...|.+.++.+
T Consensus 241 ~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~l 320 (378)
T PF03594_consen 241 NPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAAL 320 (378)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999988777666666653 3 23336788889998888877 5678889998776655
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHH----Hh---hHHHHHHHHHHHH
Q psy16876 815 VIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVL----LD---VDYGLGIGVLCSL 867 (1124)
Q Consensus 815 LI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~----~~---l~~GI~vGI~lsl 867 (1124)
-=.+.++-+. ..+..-++ +..+-.-.++||+++.- +| -.+|+++|++..+
T Consensus 321 AGLALlg~l~--~sl~~A~~-~~~~r~aAlvtFlvtaSGisl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 321 AGLALLGTLG--GSLQTAFS-DEKYREAALVTFLVTASGISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred HHHHHHHHHH--HHHHHHhc-CcchhHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 4444333332 23433333 22334456677777653 22 3467777766543
No 37
>KOG1292|consensus
Probab=97.80 E-value=0.00045 Score=80.97 Aligned_cols=109 Identities=14% Similarity=0.230 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHhhh-ccCCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhh-cCCcccchhHHH
Q psy16876 715 GLFISIVAFSINISM----ASILAKK-KYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQ-VGGKTQLASGVS 788 (1124)
Q Consensus 715 ~~~iaiv~~~esi~i----a~~~~~~-g~~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~-sGarTrlagivt 788 (1124)
.++-++++++|++.. ++....+ -.....||....+|++.+++|+||+-.+++++++...-.. +-..||.+--++
T Consensus 275 m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~a 354 (510)
T KOG1292|consen 275 MMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIA 354 (510)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhh
Confidence 345567778888653 3333222 2345689999999999999999999999988888765555 667788887788
Q ss_pred HHHHHHHHHH--HHHHHhhcchhHHHHHHHHHHHHHhh
Q psy16876 789 CVLLVLILLY--IGPFFETLPYCVLTSIVIVAVKGMLN 824 (1124)
Q Consensus 789 gvl~ll~llf--l~pll~~IP~avLAaiLI~vg~~mi~ 824 (1124)
|++++++.++ |+.+|+.||-+++||++-+ ++.|+.
T Consensus 355 a~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv~ 391 (510)
T KOG1292|consen 355 AGFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMVG 391 (510)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHHH
Confidence 8888877767 8999999999999998876 677875
No 38
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.43 E-value=0.004 Score=70.60 Aligned_cols=197 Identities=18% Similarity=0.269 Sum_probs=111.4
Q ss_pred hhHHHHHHHhhhhhhcccccccccccccccCCCCCCCCCCCccchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCc
Q psy16876 664 TEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFS-INISMASILAKKKYKIDS 742 (1124)
Q Consensus 664 ~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip~glP~~~lP~f~~~~~ll~~~~~iaiv~~~-esi~ia~~~~~~g~~~d~ 742 (1124)
..+.++++|++++...|.-+. ...... ...|.+..|+|+.- .++..++.+.++.+. +++---..+..+||++++
T Consensus 181 aV~aalvvgv~va~~~G~~~~--~~~~~~--~~~p~~v~P~Fs~~-A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~ 255 (402)
T COG3135 181 AVIAALVVGVLVAALLGDLHT--ALVALE--ISTPTWVTPEFSFA-AMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPP 255 (402)
T ss_pred HHHHHHHHHHHHHHHhCcccc--cccccc--cCcceeeCCcccHH-HHHHHhHHHHHHHHHhccCccceeehhcCCCCCC
Confidence 457777888888877775321 111111 13467778888752 233444455554442 111000112246999999
Q ss_pred hhHHHHHhhhhhhhhccCcccccccchhhHHHhhc-----CCcccchhHHHHHHHHHHHHH---HHHHHhhcchhHHHHH
Q psy16876 743 NQELLASGVSNIFASFFSCIPFASSLSRSLVQLQV-----GGKTQLASGVSCVLLVLILLY---IGPFFETLPYCVLTSI 814 (1124)
Q Consensus 743 nqELiA~GlaNivgglfGg~P~t~s~srSav~~~s-----GarTrlagivtgvl~ll~llf---l~pll~~IP~avLAai 814 (1124)
+--+.+.|+..++++.||++.++-.-.--++.... -.|--.+++++|+.-+++.+| +..++..+|.+.++.+
T Consensus 256 ~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l 335 (402)
T COG3135 256 SPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL 335 (402)
T ss_pred chHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 99999999999999999999876443333332221 124557889999999998888 4567788898655433
Q ss_pred HHHHHHHHhhhh-HHHHHHHhcCcchhHHHHHHHHHHHH----Hh---hHHHHHHHHHHHHHH
Q psy16876 815 VIVAVKGMLNQV-KDLKLAFKESYTEACVWCLTFLSVVL----LD---VDYGLGIGVLCSLIF 869 (1124)
Q Consensus 815 LI~vg~~mi~~~-~~i~~l~r~~~~D~~v~i~tfl~~l~----~~---l~~GI~vGI~lsll~ 869 (1124)
- |+-|+... ..+..-.+ +-.+-.-.++||+++.- +| -.+|++.|.+...+.
T Consensus 336 A---GLALlg~~~~~l~~A~~-~~~~R~aAlvtF~VTaSG~tl~GIgaafWGLvaG~~~~~L~ 394 (402)
T COG3135 336 A---GLALLGTLGNSLQAALK-DEREREAALVTFLVTASGLTLFGIGAAFWGLVAGLLVLALL 394 (402)
T ss_pred H---HHHHHHHHHHHHHHHhc-CcccchhhhhheeehhccceeecccHHHHHHHHHHHHHHHH
Confidence 2 22222211 12222222 22233445566666542 22 245666665544443
No 39
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.92 E-value=0.00021 Score=86.16 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhc----------
Q psy16876 712 MLDGLFISIVAFSINISMASILAKK----KYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQV---------- 777 (1124)
Q Consensus 712 l~~~~~iaiv~~~esi~ia~~~~~~----g~~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~s---------- 777 (1124)
+..++.++++.|++.-..+...++. ..-.-..-.|+..|+.|+++|+||=-..+++..+|.....+
T Consensus 339 ~~palll~iL~F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~p 418 (510)
T PF00955_consen 339 IIPALLLTILFFMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAP 418 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccC
Confidence 3446667777777654444333311 01112244589999999999999977777777777665542
Q ss_pred CC--------cccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhh
Q psy16876 778 GG--------KTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLN 824 (1124)
Q Consensus 778 Ga--------rTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~ 824 (1124)
|- -+|+++++.++++.+++ ++.|++.+||++||.|+.++.|+.-+.
T Consensus 419 Ge~~~i~~V~EqRvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~ 472 (510)
T PF00955_consen 419 GEKPKIVGVREQRVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLS 472 (510)
T ss_dssp -------------------------------------------------------
T ss_pred CCCCeeCeEEEecccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeec
Confidence 21 35899999999887776 678999999999999999999987664
No 40
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=96.29 E-value=0.012 Score=55.30 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=64.5
Q ss_pred EEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchhhhhhc
Q psy16876 908 ILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNS 987 (1124)
Q Consensus 908 vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v~~vl~ 987 (1124)
.+.+.|+|+=-..-.+-...... .+....+-+|++.|..+||+|+..|.++.+.++++|+.+.+.+++++++...+
T Consensus 13 tL~LsGeL~r~tl~~lw~~r~~~----~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p~~L~tLa~ 88 (99)
T COG3113 13 TLVLSGELDRDTLLPLWSQREAQ----LKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVPEQLRTLAE 88 (99)
T ss_pred eEEEeccccHHHHHHHHHHHHHH----ccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCcHHHHHHHH
Confidence 36788999766655555554432 22336899999999999999999999999999999999999999999998876
Q ss_pred Cccc
Q psy16876 988 HPLL 991 (1124)
Q Consensus 988 ~~~l 991 (1124)
.-++
T Consensus 89 Ly~l 92 (99)
T COG3113 89 LYNL 92 (99)
T ss_pred HhCc
Confidence 6543
No 41
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=96.21 E-value=0.15 Score=58.28 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=68.0
Q ss_pred ccCCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcc--cchhHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q psy16876 737 KYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKT--QLASGVSCVLLVLILLYIGPFFETLPYCVLTSI 814 (1124)
Q Consensus 737 g~~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarT--rlagivtgvl~ll~llfl~pll~~IP~avLAai 814 (1124)
+...|.|+-+...++=|++|+++||--.++|...-.+-.+ =+|- +-.++.+|++++++.+..-|.=-.+=.+++..+
T Consensus 318 kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTymIPaa-IaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vA 396 (492)
T PF11840_consen 318 KVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGTYMIPAA-IAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVA 396 (492)
T ss_pred ceeecccchhHHHHHHHHHhhcccCCcccccchhhhhhHH-HhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHH
Confidence 4567899999999999999999999876655444333322 2333 345678888888887665554333334567777
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHH
Q psy16876 815 VIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSV 850 (1124)
Q Consensus 815 LI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~ 850 (1124)
|++ |++|-- ...=-.+||..+..-...++.|.+.
T Consensus 397 Llv-GVflPL-leAGmqm~r~~k~sqsa~I~ifasa 430 (492)
T PF11840_consen 397 LLV-GVFLPL-LEAGMQMTRKGKTSQSAGICIFASA 430 (492)
T ss_pred HHH-HHHHHH-HHHHHHHHhcCCccceeeEEEeehh
Confidence 776 444422 1223356776665444444444433
No 42
>PRK10720 uracil transporter; Provisional
Probab=86.17 E-value=13 Score=44.88 Aligned_cols=129 Identities=20% Similarity=0.174 Sum_probs=68.7
Q ss_pred CCchhHHHHHhhhhhhhhccCc--ccccccchhh----HHHhhc-CCcccchhH-HHHHHHHHHHHHHH-----HHHhhc
Q psy16876 740 IDSNQELLASGVSNIFASFFSC--IPFASSLSRS----LVQLQV-GGKTQLASG-VSCVLLVLILLYIG-----PFFETL 806 (1124)
Q Consensus 740 ~d~nqELiA~GlaNivgglfGg--~P~t~s~srS----av~~~s-GarTrlagi-vtgvl~ll~llfl~-----pll~~I 806 (1124)
.|.++.+++-|+++++=+++++ +|..-..|=+ ...... |-.+-++++ ++|++++++.++.. .+..++
T Consensus 40 l~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~~~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~f 119 (428)
T PRK10720 40 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLF 119 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 4556789999999999776553 4432222211 111111 111222222 33444333333221 356799
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHh--------cCcchhHHHHHHHHHHHHHh-----h--HHHHHHHHHHHHHHHH
Q psy16876 807 PYCVLTSIVIVAVKGMLNQVKDLKLAFK--------ESYTEACVWCLTFLSVVLLD-----V--DYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 807 P~avLAaiLI~vg~~mi~~~~~i~~l~r--------~~~~D~~v~i~tfl~~l~~~-----l--~~GI~vGI~lsll~~v 871 (1124)
|..+.|.++..+|+.+... .+. ... .+...+.+.++++++++++. + .+++++|++++.+...
T Consensus 120 Pp~v~G~~i~lIGl~L~~~--~~~-~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~kg~~~~~~iLigIvvG~ila~ 196 (428)
T PRK10720 120 PPAAMGAIVAVIGLELAGV--AAG-MAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSF 196 (428)
T ss_pred ChHHHHHHHHHHHHHhHHH--HHh-hccccCCCCcccchHHHHHHHHHHHHHHHHHHHhccHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999852 222 111 12234556666776666421 1 1245666665555544
No 43
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=81.12 E-value=17 Score=43.66 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHH-----HhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhc-------C---cchhHHHHHHHHHH
Q psy16876 786 GVSCVLLVLILLYIGPF-----FETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKE-------S---YTEACVWCLTFLSV 850 (1124)
Q Consensus 786 ivtgvl~ll~llfl~pl-----l~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~-------~---~~D~~v~i~tfl~~ 850 (1124)
+++|++++++.+++..+ ..++|..+.+++++.+|+.+.. -.++..--. + +..+.+.+.+++++
T Consensus 98 i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~--i~l~~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~ 175 (415)
T TIGR00801 98 IATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIP--VAVKMAAGGEAAMSSATYGSLENLGVAFVVLALI 175 (415)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHH--HHHHHhccCCCcccccccCchhhHHHHHHHHHHH
Confidence 34455555444433333 7799999999999999999985 344433211 1 22345556666655
Q ss_pred HHHhhH-------HHHHHHHHHHHHHHH
Q psy16876 851 VLLDVD-------YGLGIGVLCSLIFVV 871 (1124)
Q Consensus 851 l~~~l~-------~GI~vGI~lsll~~v 871 (1124)
+++... +++++|++++.+...
T Consensus 176 vl~~~~~~g~~~~~aiLigiv~g~i~a~ 203 (415)
T TIGR00801 176 ILLNRFGKGFLKSISILIGILVGYILAL 203 (415)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 544211 477777777766655
No 44
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=79.99 E-value=6 Score=47.70 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=73.8
Q ss_pred hHHHHHhhhhhhhhccC-----ccccc--ccchhhHHHhhcCCccc--chhHHHHHHH-----HHHHHHHH-HHHhhcch
Q psy16876 744 QELLASGVSNIFASFFS-----CIPFA--SSLSRSLVQLQVGGKTQ--LASGVSCVLL-----VLILLYIG-PFFETLPY 808 (1124)
Q Consensus 744 qELiA~GlaNivgglfG-----g~P~t--~s~srSav~~~sGarTr--lagivtgvl~-----ll~llfl~-pll~~IP~ 808 (1124)
-.|++.|+++++=.+.. ..|+. .||.-.+.-+..|..++ +++++.|++. +++..++. -+..++|-
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPP 136 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAALLGGIIAAGLVYFLISPIVKIRLARLFPP 136 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44777777777765522 23322 23333334444555544 5554444433 33333344 56668999
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhc----------CcchhHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHH
Q psy16876 809 CVLTSIVIVAVKGMLNQVKDLKLAFKE----------SYTEACVWCLTFLSVVLLDV-------DYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 809 avLAaiLI~vg~~mi~~~~~i~~l~r~----------~~~D~~v~i~tfl~~l~~~l-------~~GI~vGI~lsll~~v 871 (1124)
.|+|.+++++|..++. . .+...--. +...+...+.|+++++++.. .++|++|++.+.+...
T Consensus 137 vVtG~Vi~~IGlsL~~-v-ai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g~~~~i~ILiGlv~G~~la~ 214 (451)
T COG2233 137 VVTGPVVLVIGLSLAP-V-AINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKGFLRRIPILIGLVVGYLLAL 214 (451)
T ss_pred ceEEeEeeeehhhhHH-H-HHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 2 34332211 22345566677777666532 3677788887777766
Q ss_pred h
Q psy16876 872 V 872 (1124)
Q Consensus 872 ~ 872 (1124)
.
T Consensus 215 ~ 215 (451)
T COG2233 215 F 215 (451)
T ss_pred H
Confidence 4
No 45
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=79.34 E-value=0.73 Score=46.11 Aligned_cols=41 Identities=22% Similarity=0.114 Sum_probs=34.1
Q ss_pred eeeeeechhhh-----hhcccccCC-------------------chhhHHHHHHHHHHhHHhhHH
Q psy16876 415 HVALRISNLMR-----VLGTEAVQD-------------------PTKMEAHVRAQMAKRQKDHEE 455 (1124)
Q Consensus 415 ~~~~~~~~l~~-----~l~~~a~~~-------------------~~~~~~~v~~~~~~R~~~~e~ 455 (1124)
|.+|+|++|.| ++..||.|+ +++++++|.++|.+|++|+|.
T Consensus 1 ~~~~~I~~L~~p~~R~kI~~nA~ql~LtG~~~~g~~pgiIvvEG~~k~i~~y~~lmlrri~W~e~ 65 (128)
T PF06544_consen 1 CYVHHIKSLSNPKKRFKIDKNAKQLHLTGFCLPGPKPGIIVVEGGEKSIKEYKKLMLRRIKWNEP 65 (128)
T ss_pred CEEEEeCcccCHHHHHHHHHHHHHhCCeEEEEEcCCcEEEEEECCHHHHHHHHHHHhceeccccc
Confidence 45677767666 888888888 889999999999999999654
No 46
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=78.96 E-value=29 Score=44.85 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=25.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhhccccccccccccccchhHHHHHHHhhhhh
Q psy16876 627 KTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSS 677 (1124)
Q Consensus 627 ~~~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~LI~Ii~gtlia~ 677 (1124)
..|.+.+++|++.+++.++ ..+++.+ +++|.+++.+++|.+++-
T Consensus 10 ~~~l~~~~lG~~lll~~l~-s~~lkeR------l~Ls~~~v~Ll~GiilGP 53 (810)
T TIGR00844 10 KAHVAYSCVGIFSSIFSLV-SLFVKEK------LYIGESMVASIFGLIVGP 53 (810)
T ss_pred chhhHHHHHHHHHHHHHHH-HHHHHhh------cCCcHHHHHHHHHHHhhh
Confidence 4455555555554443332 2222221 268899999999988774
No 47
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=78.33 E-value=40 Score=40.35 Aligned_cols=127 Identities=17% Similarity=0.307 Sum_probs=68.5
Q ss_pred hhHHHHHhhhhhhhh--c--c-CcccccccchhhHHHh--hcCCcccc-----hhHHHHHHHHHHHHHHHHHHhhcchhH
Q psy16876 743 NQELLASGVSNIFAS--F--F-SCIPFASSLSRSLVQL--QVGGKTQL-----ASGVSCVLLVLILLYIGPFFETLPYCV 810 (1124)
Q Consensus 743 nqELiA~GlaNivgg--l--f-Gg~P~t~s~srSav~~--~sGarTrl-----agivtgvl~ll~llfl~pll~~IP~av 810 (1124)
..-+++-|+++++=+ + + +.+|...+.+-.-+.. ..|...++ +.+++|++++++..++.-+..++|..+
T Consensus 35 ~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~ga~~v~Gii~illg~~~~~l~~~iPp~v 114 (406)
T TIGR03173 35 SADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIVAGLFVILLAPFFSKLVRFFPPVV 114 (406)
T ss_pred HHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHH
Confidence 345778888888774 2 2 3455443333222211 11111122 334556665555556778889999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHh-------cCcchhHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHH
Q psy16876 811 LTSIVIVAVKGMLNQVKDLKLAFK-------ESYTEACVWCLTFLSVVLLDV-------DYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 811 LAaiLI~vg~~mi~~~~~i~~l~r-------~~~~D~~v~i~tfl~~l~~~l-------~~GI~vGI~lsll~~v 871 (1124)
.|.++..+|+.++. ..+....- .++.++.+.++++++++++.. .+++++|++++.+...
T Consensus 115 ~G~~i~~IGl~l~~--~~~~~~~g~~~~~~~~~~~~~~l~l~~l~~~il~~~~~~~~~~~~aiLi~ivvg~iva~ 187 (406)
T TIGR03173 115 TGTVITLIGLSLMP--VAINWAAGGAGAPDFGSPQNLGLALLTLVIILLLNRFGKGFLRSIAVLLGLVVGTIVAA 187 (406)
T ss_pred HHHHHHHHHHHHHH--HHHHHhccCCCcccccchHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHH
Confidence 99988888887774 22322211 112334555556555544321 1366777766666554
No 48
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=77.15 E-value=22 Score=43.27 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy16876 785 SGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVL 864 (1124)
Q Consensus 785 givtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~~l~~GI~vGI~ 864 (1124)
+++.|+++.+.+++.+-+=+..|+..++.++-.+....+... . ...-.. .-.++...++.++..|+++|++
T Consensus 137 saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~-g-------~~~p~~-~~~~l~~~ll~P~~ig~ai~~~ 207 (459)
T PF10337_consen 137 SAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTY-G-------PLFPTF-FAYTLGKTLLKPFLIGIAIALV 207 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHh-C-------cCcCcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777667777778998666655554444332210 0 111111 4566777788899999999999
Q ss_pred HHHHHHHh
Q psy16876 865 CSLIFVVV 872 (1124)
Q Consensus 865 lsll~~v~ 872 (1124)
+++++|-.
T Consensus 208 vslliFP~ 215 (459)
T PF10337_consen 208 VSLLIFPE 215 (459)
T ss_pred HheeecCC
Confidence 99888863
No 49
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=76.15 E-value=37 Score=41.17 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHH--HHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhc------C-----cchhHHHHHHHHHHH
Q psy16876 785 SGVSCVLLVLILLY--IGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKE------S-----YTEACVWCLTFLSVV 851 (1124)
Q Consensus 785 givtgvl~ll~llf--l~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~------~-----~~D~~v~i~tfl~~l 851 (1124)
.+++|++.+++.++ +..+..++|.-|.|.+++.+|+.++. ..++.+.-. + ...+...+.++++++
T Consensus 107 ~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~--~a~~~~~G~~~~~~~~~~~~~~~~~~~a~~~l~~il 184 (433)
T PRK11412 107 IALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTT--IFFKGMLGLPFGIADPNGKIQLPPFGLSVAVMCLVL 184 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHH--HHHHHhcCCCccCcccccccchHHHHHHHHHHHHHH
Confidence 34555555555434 77888899999999999999999995 234333211 0 112334444554444
Q ss_pred HHh-----h--HHHHHHHHHHHHHHHH
Q psy16876 852 LLD-----V--DYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 852 ~~~-----l--~~GI~vGI~lsll~~v 871 (1124)
.+. + .+++++|++++.+++.
T Consensus 185 ~~~~~~~g~~~~~svLiGiv~G~v~a~ 211 (433)
T PRK11412 185 AMIIFLPQRIARYSLLVGTIVGWILWA 211 (433)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 432 2 4677888888877643
No 50
>KOG4364|consensus
Probab=73.45 E-value=19 Score=44.58 Aligned_cols=12 Identities=33% Similarity=0.224 Sum_probs=5.3
Q ss_pred cCCcCCHHHHHH
Q psy16876 309 MPVFLTDKERKK 320 (1124)
Q Consensus 309 ~~~~~tkk~rk~ 320 (1124)
-+..|+.|..|+
T Consensus 243 ~p~~l~~KQ~rk 254 (811)
T KOG4364|consen 243 RPEKLLLKQLRK 254 (811)
T ss_pred cchhHHHHHHHH
Confidence 344444444443
No 51
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=72.41 E-value=1.1e+02 Score=37.18 Aligned_cols=129 Identities=14% Similarity=0.174 Sum_probs=66.2
Q ss_pred CCchhHHHHHhhhhhhhhc-c-Ccccccc----cchhhHHHhh--cC-Ccc-c-----chhHHHHHHHHHHHHHH-----
Q psy16876 740 IDSNQELLASGVSNIFASF-F-SCIPFAS----SLSRSLVQLQ--VG-GKT-Q-----LASGVSCVLLVLILLYI----- 799 (1124)
Q Consensus 740 ~d~nqELiA~GlaNivggl-f-Gg~P~t~----s~srSav~~~--sG-arT-r-----lagivtgvl~ll~llfl----- 799 (1124)
.|.+..+++-|+++++=++ + +.+|..- +|.-..+... ++ +.+ . -+.+++|++.+++.++.
T Consensus 56 l~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~~~~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~ 135 (429)
T TIGR03616 56 FDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATGYNGQGTNPNIALALGGIIACGLVYAAIGLVVMRTGT 135 (429)
T ss_pred CCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444679999999999874 3 3455322 2222222211 11 111 1 22334444444333322
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHH-----hh--HHHHHHHHHHHHHHHH
Q psy16876 800 GPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLL-----DV--DYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 800 ~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~-----~l--~~GI~vGI~lsll~~v 871 (1124)
.-+..++|..+.|.+++.+|+.++. -.++..-..+..++ ..+++++++++. ++ .+++++|++++.+...
T Consensus 136 ~~l~r~fpPvV~G~vv~lIGlsL~~--vg~~~~~~~~~~~~-~al~tl~~i~l~~l~~~~~l~~~avLiGivvG~iva~ 211 (429)
T TIGR03616 136 RWIERLMPPVVTGAVVMAIGLNLAP--IAVKSVSASGFDSW-MAVLTILCIGAVAVFTRGMLQRLLILVGLIAAYLAYF 211 (429)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHH--HHHHhccccccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999984 23432111111221 233333333222 33 4566777777666544
No 52
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=68.03 E-value=1.8e+02 Score=34.89 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHH
Q psy16876 809 CVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLL 853 (1124)
Q Consensus 809 avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~ 853 (1124)
.++..-.+-+++++.+...+.-+.-+..+.....+..+|+-.+++
T Consensus 284 ~Ai~TSFlGv~lgl~d~l~d~~k~~~~~~~r~~~~~ltf~ppl~~ 328 (394)
T PF03222_consen 284 FAIATSFLGVYLGLFDFLADLFKLKNNSSGRLKTWLLTFLPPLIF 328 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHhHHHH
Confidence 344444555677777755544332122334455555565554443
No 53
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=68.00 E-value=47 Score=39.68 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=40.0
Q ss_pred HHHHhhhhhhhhccCcccccccchhhH--HH-hhcCCcccc-----hhHHHHHHHHHHHH--HHHHHHhhcchhHHHHHH
Q psy16876 746 LLASGVSNIFASFFSCIPFASSLSRSL--VQ-LQVGGKTQL-----ASGVSCVLLVLILL--YIGPFFETLPYCVLTSIV 815 (1124)
Q Consensus 746 LiA~GlaNivgglfGg~P~t~s~srSa--v~-~~sGarTrl-----agivtgvl~ll~ll--fl~pll~~IP~avLAaiL 815 (1124)
.++.|+++++=|+.--+|+..+.|--. .- ...++ -.+ +.+++|++++++.+ .+..+..+||.++.++++
T Consensus 64 ~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~-~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 64 GIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG-ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred HHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 455566666666555666665555111 11 11111 122 23555555555433 277789999999998888
Q ss_pred HHH
Q psy16876 816 IVA 818 (1124)
Q Consensus 816 I~v 818 (1124)
-=+
T Consensus 143 AGI 145 (395)
T TIGR00843 143 AGI 145 (395)
T ss_pred HHH
Confidence 433
No 54
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=66.23 E-value=32 Score=41.02 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHHHHHHHhh
Q psy16876 786 GVSCVLLVLILLYIG--PFFETLPYCVLTSIVIVAVKGMLN 824 (1124)
Q Consensus 786 ivtgvl~ll~llfl~--pll~~IP~avLAaiLI~vg~~mi~ 824 (1124)
++.|++++++.++.. -+..++|..+.+++++.+|+.+..
T Consensus 97 ~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~ 137 (389)
T PF00860_consen 97 LISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAP 137 (389)
T ss_dssp HHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhh
Confidence 344444444443333 678899999999999999999984
No 55
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=61.64 E-value=1.8e+02 Score=37.98 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHcCc
Q psy16876 955 TVKSFLDLYKELMEQGI 971 (1124)
Q Consensus 955 a~~~L~~l~~~l~~~gi 971 (1124)
..+.+.++.+.+++.|.
T Consensus 375 Ty~~~~~l~~~~e~~~~ 391 (764)
T TIGR02865 375 TYSAMEELIENLEEKKD 391 (764)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 34455555555555443
No 56
>PF07613 DUF1576: Protein of unknown function (DUF1576); InterPro: IPR011470 This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.
Probab=60.88 E-value=43 Score=35.71 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=18.9
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy16876 806 LPYCVLTSIVIVAVKGMLNQVKDLKLAF 833 (1124)
Q Consensus 806 IP~avLAaiLI~vg~~mi~~~~~i~~l~ 833 (1124)
+=-+++|+++.++|+.++. +.++..|
T Consensus 61 lnGp~iaaiftv~GFs~FG--Kn~~Ni~ 86 (183)
T PF07613_consen 61 LNGPTIAAIFTVVGFSAFG--KNIKNIW 86 (183)
T ss_pred CCcHHHHHHHHHHHHHHcC--CcHHHHh
Confidence 3447888888888888885 5666655
No 57
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=58.72 E-value=2.8e+02 Score=35.63 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhhhcc
Q psy16876 666 MIVIVAGALLSSILD 680 (1124)
Q Consensus 666 LI~Ii~gtlia~~lg 680 (1124)
+.+++.|.+.+-++|
T Consensus 416 i~t~i~G~l~g~~fG 430 (660)
T COG1269 416 ISTIIWGFLYGEFFG 430 (660)
T ss_pred HHHHHHHHHhccccC
Confidence 455555555554444
No 58
>PRK09776 putative diguanylate cyclase; Provisional
Probab=56.96 E-value=2.4e+02 Score=37.99 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=6.4
Q ss_pred chhHHHHHHHhhh
Q psy16876 663 PTEMIVIVAGALL 675 (1124)
Q Consensus 663 P~~LI~Ii~gtli 675 (1124)
|+.+++.+++.++
T Consensus 47 ~~~~~~~~~~~l~ 59 (1092)
T PRK09776 47 PGILLSCSLGNIA 59 (1092)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544443
No 59
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=56.39 E-value=75 Score=38.40 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy16876 26 MAHAQKMIEERKKAL 40 (1124)
Q Consensus 26 ~~~~~~~~~~~~~~~ 40 (1124)
|..-|-++++-+++.
T Consensus 61 m~~lqPel~~iq~ky 75 (429)
T PRK00247 61 AAHIRPKRKALREEY 75 (429)
T ss_pred HHHcCHHHHHHHHHH
Confidence 444455555555544
No 60
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=54.80 E-value=3.3e+02 Score=32.51 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCchh-------HHHHHhhhhhhhhccCcccccccchhhHHHhhc--CCccc
Q psy16876 712 MLDGLFISIVAFSINISMASILAKKKYKIDSNQ-------ELLASGVSNIFASFFSCIPFASSLSRSLVQLQV--GGKTQ 782 (1124)
Q Consensus 712 l~~~~~iaiv~~~esi~ia~~~~~~g~~~d~nq-------ELiA~GlaNivgglfGg~P~t~s~srSav~~~s--GarTr 782 (1124)
+..+++-+++++..+..+.-...+.. -.+..| -.++.|+++++-|+.-=+|+.+..|--....-. ...-.
T Consensus 8 ~~aG~va~lvg~tg~~aiv~qaa~a~-g~s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~~~~~~~~ 86 (378)
T PF03594_consen 8 VSAGFVAVLVGYTGPVAIVLQAAQAA-GASPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLATSLPGYS 86 (378)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHHHhccCCC
Confidence 44556666677665544321111111 112222 135667777777777778888777655544443 22333
Q ss_pred chh-----HHHHHHHHHHHHH--HHHHHhhcchhH----HHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHH
Q psy16876 783 LAS-----GVSCVLLVLILLY--IGPFFETLPYCV----LTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVV 851 (1124)
Q Consensus 783 lag-----ivtgvl~ll~llf--l~pll~~IP~av----LAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l 851 (1124)
+.- +++|+++++..+. +..++.+||.++ |||+++--+...+.....- ..=...++.+|+.+-
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~-------P~l~~~ml~~~l~~~ 159 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQAD-------PLLVGPMLAVFLLAR 159 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHH
Confidence 333 3344444444433 677899999865 5555655555555422111 111334455555543
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q psy16876 852 LLDVDYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 852 ~~~l~~GI~vGI~lsll~~v 871 (1124)
-+.=-|++...++.+++...
T Consensus 160 r~~pr~av~~al~~g~~~a~ 179 (378)
T PF03594_consen 160 RFSPRYAVLAALVAGVAVAA 179 (378)
T ss_pred HHcchhHHHHHHHHHHHHHH
Confidence 33333455555555555444
No 61
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=54.24 E-value=1.8e+02 Score=34.24 Aligned_cols=46 Identities=11% Similarity=0.304 Sum_probs=32.7
Q ss_pred hhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHH
Q psy16876 756 ASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFF 803 (1124)
Q Consensus 756 gglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll 803 (1124)
-|++|++|+. ...-.+.....|+-+++.+++..+=++.+. ++.|++
T Consensus 118 Ta~~gs~PGg-as~m~~iA~d~gAd~~~VAl~Q~lRvl~Vv-l~vplv 163 (352)
T COG3180 118 TAFLGSSPGG-ASAMVSIAQDYGADLRLVALMQYLRVLFVV-LLAPLV 163 (352)
T ss_pred hhhHhcCCch-HHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HHHHHH
Confidence 5788999965 555566668899999999998876665554 334433
No 62
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=52.84 E-value=3e+02 Score=36.55 Aligned_cols=86 Identities=10% Similarity=0.184 Sum_probs=55.1
Q ss_pred HHHHHHHHHh-hhccCCCchhHHHHHhhhhhhhhccCcccccc--------cchhhHHHhhc--C----CcccchhHHHH
Q psy16876 725 INISMASILA-KKKYKIDSNQELLASGVSNIFASFFSCIPFAS--------SLSRSLVQLQV--G----GKTQLASGVSC 789 (1124)
Q Consensus 725 esi~ia~~~~-~~g~~~d~nqELiA~GlaNivgglfGg~P~t~--------s~srSav~~~s--G----arTrlagivtg 789 (1124)
=+++.+..+. +++..+..+.-|++.+++.++=|+|||-|-+- .|..+.-+... | .--.+.|++++
T Consensus 385 PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~~yl~~~~WigiW~~ 464 (900)
T TIGR00834 385 PAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGLEYLVGRVWIGLWLV 464 (900)
T ss_pred HHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 3344444443 56778999999999999999999999998541 11111111110 0 01246788888
Q ss_pred HHHHHHHHH-HHHHHhhcchhH
Q psy16876 790 VLLVLILLY-IGPFFETLPYCV 810 (1124)
Q Consensus 790 vl~ll~llf-l~pll~~IP~av 810 (1124)
++++++..+ .+.++.|+-.++
T Consensus 465 ~~~~lla~~~~s~lvryiTRFT 486 (900)
T TIGR00834 465 LLVLLLVATEGSFLVRYISRFT 486 (900)
T ss_pred HHHHHHHHHhHHHHHHHHHhhH
Confidence 888777666 566777776643
No 63
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=51.83 E-value=1.8e+02 Score=35.27 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=36.2
Q ss_pred CCCCCccchh--HHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCchhHHHHHhhhhhhhhccCcccc
Q psy16876 700 PQPPPFYLIP--KLMLDGLFISIVAFSINISMASILAK-KKYKIDSNQELLASGVSNIFASFFSCIPF 764 (1124)
Q Consensus 700 ~~lP~f~~~~--~ll~~~~~iaiv~~~esi~ia~~~~~-~g~~~d~nqELiA~GlaNivgglfGg~P~ 764 (1124)
.-.|||+.+. +.+..++.-+++++.....+--..+. -+++.|..+.-+..++.|..-+++-|..+
T Consensus 202 ~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~I 269 (439)
T COG0733 202 LFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVI 269 (439)
T ss_pred HhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456776543 44455554444444322222111221 13467788888888999988888776543
No 64
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=51.54 E-value=31 Score=31.03 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=45.0
Q ss_pred hHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHH-HHHHHHHHH--HcCcEEEEEecCchhhhhhcC
Q psy16876 920 KDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKS-FLDLYKELM--EQGISLHIVKLLEPVKQVNSH 988 (1124)
Q Consensus 920 a~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~-L~~l~~~l~--~~gi~L~l~~l~~~v~~vl~~ 988 (1124)
+..+++.|.+... ..+.|+|||++|..+=+|=+.. +..++..+. .-..++.+.++++.+..+++.
T Consensus 3 G~~~~~~i~~~l~----~~~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~~ 70 (74)
T PF14213_consen 3 GERLRDEIEPALK----EGEKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIKR 70 (74)
T ss_pred hHHHHHHHHHHHh----cCCeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHHH
Confidence 4566777766531 2334999999999998886644 666665543 344678899999988877654
No 65
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=51.21 E-value=44 Score=36.57 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy16876 838 TEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVV 872 (1124)
Q Consensus 838 ~D~~v~i~tfl~~l~~~l~~GI~vGI~lsll~~v~ 872 (1124)
.+....+.+++-.++.++.|-+++|..+.+.-+++
T Consensus 191 ik~se~~~~~lwyi~Y~vPY~~~ig~~i~l~~~~~ 225 (230)
T PF03904_consen 191 IKASESFWTYLWYIAYLVPYIFAIGLFIYLYEWIR 225 (230)
T ss_pred HhhhHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33344456667777788888888888777776664
No 66
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=50.74 E-value=8.6 Score=42.69 Aligned_cols=56 Identities=16% Similarity=0.412 Sum_probs=43.4
Q ss_pred cccchhhHHHHHHHHHHhhhHHHHHHhcCCCcccchhhhhhhhHhhhhcCCCcccccc
Q psy16876 1063 NDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMG 1120 (1124)
Q Consensus 1063 ~~~~~D~~ag~tv~~~~iPq~~aya~lag~~p~~Gly~~~~~~~~y~~fg~s~~~~~G 1120 (1124)
+.++..+.+++.+.+-.+|-|++|+.++-=.--.=+++.++..++|+ |+|..+.+|
T Consensus 10 ~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~e~~lmS~~iyA--GasQfv~i~ 65 (238)
T COG1296 10 AEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSPLEAILMSLLIYA--GASQFVAIG 65 (238)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHc--cHHHHHHHH
Confidence 36899999999999999999999998763333333677888888888 777666554
No 67
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=48.86 E-value=5e+02 Score=33.21 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHHHHhhcchhHH--HHHHHHHHHHHh
Q psy16876 798 YIGPFFETLPYCVL--TSIVIVAVKGML 823 (1124)
Q Consensus 798 fl~pll~~IP~avL--AaiLI~vg~~mi 823 (1124)
+++.+++|+=..++ |+..|..+++++
T Consensus 549 ~~~d~lSY~RL~AlgLa~~~ia~~~n~l 576 (646)
T PRK05771 549 YLGDVLSYARLMALGLAGAGIAMAFNLM 576 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766544 344444445544
No 68
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=48.60 E-value=68 Score=38.56 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=36.2
Q ss_pred hhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHhh
Q psy16876 750 GVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPY----CVLTSIVIVAVKGMLN 824 (1124)
Q Consensus 750 GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~~IP~----avLAaiLI~vg~~mi~ 824 (1124)
++|+++||++| +.-..+...+|. ..-.++.++.+.++. +++.+...+|. .--|+.++..-+.++.
T Consensus 67 ~lGTl~aG~La-------~~~~~la~~~g~--~~~~~~i~~~vFi~~-~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~ 135 (406)
T PF11744_consen 67 GLGTLLAGILA-------FGVSWLASLSGD--PGEPIVIGISVFIIG-FIATFVRFIPKIKARYDYGGLVFILTFCLVA 135 (406)
T ss_pred HHHHHHHHHHH-------HHHHHHHHhcCc--cchhHHHHHHHHHHH-HHHHHHHhchhhhhhhhHHHHHHHHHHHhhe
Confidence 45677777663 222233333443 333455555554544 56668888887 4456666666666653
No 69
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=48.49 E-value=24 Score=30.53 Aligned_cols=21 Identities=38% Similarity=0.385 Sum_probs=18.7
Q ss_pred ccchhHHHHHHHhhhhhhccc
Q psy16876 661 PIPTEMIVIVAGALLSSILDV 681 (1124)
Q Consensus 661 ~IP~~LI~Ii~gtlia~~lg~ 681 (1124)
++++..|+|++|.+++|+-|.
T Consensus 38 rihGSAIAI~lGLvLAy~GG~ 58 (60)
T PF03818_consen 38 RIHGSAIAIVLGLVLAYIGGV 58 (60)
T ss_pred CcchHHHHHHHHHHHHHHccc
Confidence 689999999999999998764
No 70
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=46.99 E-value=1.5e+02 Score=31.14 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=33.9
Q ss_pred CCccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccCCchhhHHHHHHHHHHHHhH
Q psy16876 306 PVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDH 384 (1124)
Q Consensus 306 ~~~~~~~~tkk~rk~~rr~~~~~~~~~k~~~~~~~~~~p~~~k~~~~n~~~v~~~~a~~dpt~~e~~v~~q~~~r~~~h 384 (1124)
.+...+.||...|.++|.-++...++ .|++..--...+..+...+.. =|+.||.|+++..++|
T Consensus 44 ~MF~gLdLTdaQRqQmRdLm~~~r~~-----------~~~~~~~er~amh~LI~ad~F-----DEaavra~a~kma~~~ 106 (166)
T PRK10363 44 HMFDGISLTEHQRQQMRDLMQQARHE-----------QPPVNVSEMETMHRLVTAENF-----DENAVRAQAEKMAQEQ 106 (166)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhc-----------ccccCHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHH
Confidence 45677889999888877766433322 111112123333344444433 3566777777765443
No 71
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=45.14 E-value=3.3e+02 Score=34.00 Aligned_cols=94 Identities=14% Similarity=0.235 Sum_probs=45.8
Q ss_pred CCCchhHHHHHhhh--hhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHh--hcchhHHHHH
Q psy16876 739 KIDSNQELLASGVS--NIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFE--TLPYCVLTSI 814 (1124)
Q Consensus 739 ~~d~nqELiA~Gla--NivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~--~IP~avLAai 814 (1124)
.+-..+.|+..|+| ..++.+|||+.. |--++ -++.-+..+.+++++.++.+.++. .||.+ +
T Consensus 104 ~p~~s~ili~~~i~i~a~~~~l~~g~~s-----r~~~g------lqw~~l~~~~~ml~~giy~~~~l~~~~ip~~--~-- 168 (952)
T TIGR02921 104 NPASSHILINIGIAIAAFAACLFGGVAS-----RFKIG------LQWLQLLAAMLMLLFGIYAAALLAFFAIPAA--A-- 168 (952)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhcchh-----cccch------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--h--
Confidence 45667888777664 556677776652 21111 123344455555555555444433 34432 2
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHH
Q psy16876 815 VIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLL 853 (1124)
Q Consensus 815 LI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~ 853 (1124)
|++.+. ..+..-|-.+..+++.+..+|++.+++
T Consensus 169 ----gff~l~--~~i~~~~~~~i~nyil~~~a~i~glfi 201 (952)
T TIGR02921 169 ----GFFELL--EEIEFEHLGDIFNYILFHTAFICGLFI 201 (952)
T ss_pred ----HHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333321 222222333444556666666666543
No 72
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=44.25 E-value=1.4e+02 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=14.4
Q ss_pred ccchhHHHHHHHhhhhhh
Q psy16876 661 PIPTEMIVIVAGALLSSI 678 (1124)
Q Consensus 661 ~IP~~LI~Ii~gtlia~~ 678 (1124)
++|.+.+.+++|.+++..
T Consensus 34 ~lP~s~llil~GlllG~i 51 (559)
T TIGR00840 34 AVPESVLLIVYGLLVGGI 51 (559)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 489988888888888754
No 73
>PRK10949 protease 4; Provisional
Probab=43.94 E-value=3e+02 Score=35.11 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEE
Q psy16876 921 DKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIV 976 (1124)
Q Consensus 921 ~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~ 976 (1124)
.++.+.|++.. ..+..+-||||..+...-..+.++.|.+..+++++.|..++-.
T Consensus 98 ~div~~i~~Aa--~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~ 151 (618)
T PRK10949 98 FDIVNTIRQAK--DDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV 151 (618)
T ss_pred HHHHHHHHHHh--cCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35666666643 4567789999999988888888888999999999999876543
No 74
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=43.58 E-value=6.8e+02 Score=30.38 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=25.7
Q ss_pred chhHHHHHhhhhhhhhccCcccccccchhhHHHhh
Q psy16876 742 SNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQ 776 (1124)
Q Consensus 742 ~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~ 776 (1124)
..+.....-.+.++|.+.|-.|+.|+..-+-+...
T Consensus 227 ~~~~~~~~~~~s~iG~~vG~lPG~G~~va~~lay~ 261 (419)
T PF01970_consen 227 IKRIWKNILRGSIIGTFVGILPGAGATVAAFLAYG 261 (419)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCcHHHHHHHHHH
Confidence 34456777888999999999998877665555544
No 75
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=42.26 E-value=1.5e+02 Score=33.66 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=43.4
Q ss_pred HHHHHhhcchh------HHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHHhh--HHHH-HHHHHHHHHH
Q psy16876 799 IGPFFETLPYC------VLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDV--DYGL-GIGVLCSLIF 869 (1124)
Q Consensus 799 l~pll~~IP~a------vLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~~l--~~GI-~vGI~lsll~ 869 (1124)
...++..||.- +.|++|=.+|+-|+- +.+|+ +..+..+++.|+.+.++++ +.|+ ++|++++++.
T Consensus 167 v~~~~~~iP~~v~~GL~vaggmLPAvGfAmLl-----~~m~~--k~~~~ff~lGF~l~ayl~~~~~i~iaiig~~iA~~~ 239 (267)
T PRK09757 167 MQALVKAMPAWLTHGFEVAGGILPAVGFGLLL-----RVMFK--AQYIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-----HHHhh--cchHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Confidence 44677889975 456677778888773 34454 4456667788998888874 4665 4677777753
No 76
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=40.64 E-value=1.8e+02 Score=32.96 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=39.1
Q ss_pred chhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHH
Q psy16876 742 SNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIG 800 (1124)
Q Consensus 742 ~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~ 800 (1124)
..=||...|.+|+-|+. --=+.++|+..|+..+.+|..++-+....++-+..+..++.
T Consensus 53 atLEL~~LG~~~iGgav-pPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~ 110 (265)
T COG3715 53 ATLELAALGWANIGGAV-PPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLT 110 (265)
T ss_pred HHHHHHHHhCcCcccCC-CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34789999999998744 34456888899999999988755554434444444443333
No 77
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=40.17 E-value=3.5e+02 Score=32.66 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16876 712 MLDGLFISIVAFSINISMASILA 734 (1124)
Q Consensus 712 l~~~~~iaiv~~~esi~ia~~~~ 734 (1124)
+..++.+.+.+|..+-.+.+...
T Consensus 195 ~~~~ipv~vfsF~~h~~i~si~~ 217 (415)
T COG0814 195 LLLAIPVFVFSFGFHGNIPSLVN 217 (415)
T ss_pred HHHHhhHHHhhhhCCccchHHHH
Confidence 34455666666655444444443
No 78
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=40.10 E-value=2.6e+02 Score=35.53 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=16.1
Q ss_pred CCCchhHHHHHhhhhhhhhcc
Q psy16876 739 KIDSNQELLASGVSNIFASFF 759 (1124)
Q Consensus 739 ~~d~nqELiA~GlaNivgglf 759 (1124)
..++..-+.+|-++.++|++.
T Consensus 464 ~~~Pr~~f~~Q~iG~~ig~~v 484 (624)
T PF03169_consen 464 GIPPRAQFYAQIIGTIIGAFV 484 (624)
T ss_pred CCChHHHHHHHHHHHHHHHHH
Confidence 466777788888888888775
No 79
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=37.70 E-value=5.2e+02 Score=32.26 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=14.5
Q ss_pred ccchhHHHHHHHhhhhhh
Q psy16876 661 PIPTEMIVIVAGALLSSI 678 (1124)
Q Consensus 661 ~IP~~LI~Ii~gtlia~~ 678 (1124)
++|..++-+++|.+++..
T Consensus 21 ~lP~~v~lil~Gi~lg~~ 38 (525)
T TIGR00831 21 RLPYPIALILAGLLLGLA 38 (525)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 689998888888888754
No 80
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=37.67 E-value=1.5e+02 Score=36.89 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=21.5
Q ss_pred chhHHHHHHHhhhhhhcccccccccccccccCCCCCCC
Q psy16876 663 PTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSP 700 (1124)
Q Consensus 663 P~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip~glP~~ 700 (1124)
...+.++++|+++...+.......+-++|.+..|+..+
T Consensus 45 ~np~~gvl~Gi~~T~llQSStatt~lt~gfV~aGl~sl 82 (533)
T COG1283 45 SNPILGVLAGIVATALLQSSTATTVLTIGFVAAGLLSL 82 (533)
T ss_pred CCcHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccch
Confidence 34467777777776666543333344456666666543
No 81
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.27 E-value=1.1e+02 Score=35.82 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=45.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHH----hhH
Q psy16876 781 TQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLL----DVD 856 (1124)
Q Consensus 781 Trlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~----~l~ 856 (1124)
-|+-|++-|.++++++.|.+-.+.-=|.+.+.+.+..+.=. .++.+--+--.|.-+.+.+++.+.+. .+.
T Consensus 157 WRiPsiIe~~liliiv~~~~~ki~~~~la~~~aA~~~alDp------~l~amg~VAMLDIhvaFFtaL~~~fl~~~R~l~ 230 (438)
T COG4346 157 WRIPSIIEGALILIIVYFVAYKIARSPLAGLIAALLAALDP------LLRAMGGVAMLDIHVAFFTALFMYFLANDRPLW 230 (438)
T ss_pred eeccHHHhhhHHHHHHHHHHHHHhcCchHHHHHHHHHhhCc------HHHHhcchhHHHHHHHHHHHHHHHHHhcCCeeh
Confidence 57778888888888876666555555777766666554211 12222222344666666666666554 244
Q ss_pred HHHHHHHHH
Q psy16876 857 YGLGIGVLC 865 (1124)
Q Consensus 857 ~GI~vGI~l 865 (1124)
.||+.|.+.
T Consensus 231 sgiAlGLAA 239 (438)
T COG4346 231 SGIALGLAA 239 (438)
T ss_pred HHHHHHHHH
Confidence 555555544
No 82
>KOG1966|consensus
Probab=36.93 E-value=58 Score=40.55 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=37.5
Q ss_pred HHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy16876 817 VAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFV 870 (1124)
Q Consensus 817 ~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~~l~~GI~vGI~lsll~~ 870 (1124)
++.+.|+.++..+ ..-.+...|+...++.|+++-+.|+..|++.|++.|++.-
T Consensus 210 VVLY~~f~sf~~i-g~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tk 262 (670)
T KOG1966|consen 210 VVLYNMFISFVEI-GSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTK 262 (670)
T ss_pred EehHHHHHHHHHh-cccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHH
Confidence 3456666543333 1124567899999999999888888888888888887664
No 83
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=34.93 E-value=1.1e+03 Score=30.22 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=16.2
Q ss_pred hccccchhHHHHHHHHHHHHHHHhhc
Q psy16876 624 NIHKTNYVAFGVVVILVSVLIIYNDH 649 (1124)
Q Consensus 624 ~l~~~~~~~l~l~~~~lllllil~~~ 649 (1124)
..+..+..++.++++.+++++-..||
T Consensus 86 r~~~~~~~d~~~g~~~i~l~le~~RR 111 (613)
T TIGR02123 86 RGGIPTTTDVVVGVLLILLVLEATRR 111 (613)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHHH
Confidence 33444566777777777766655554
No 84
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=34.50 E-value=2.5e+02 Score=33.00 Aligned_cols=28 Identities=14% Similarity=0.193 Sum_probs=13.0
Q ss_pred cchh-HHHHHHHHHHHHHHHHHHhhcchhH
Q psy16876 782 QLAS-GVSCVLLVLILLYIGPFFETLPYCV 810 (1124)
Q Consensus 782 rlag-ivtgvl~ll~llfl~pll~~IP~av 810 (1124)
+..| =+...+|.+.+ +.+.+.+.++.+.
T Consensus 247 ~~~G~~~a~~lF~igl-~~a~fss~i~~~~ 275 (358)
T PF01566_consen 247 PLLGSPWARYLFAIGL-FAAGFSSSITATL 275 (358)
T ss_pred HhcCchHHHHhHHHHH-HHHHHhhHHHhcc
Confidence 3444 24444554444 5555555554433
No 85
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=34.03 E-value=75 Score=34.23 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=42.8
Q ss_pred hhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHHhhHHHHHHH
Q psy16876 804 ETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIG 862 (1124)
Q Consensus 804 ~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~~l~~GI~vG 862 (1124)
..+...+|-.+++.+|+++=.+-..++.+++.++.-+.+-+.+.+.++..++..+.+.|
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~ 81 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLG 81 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566778888899999998766677888888888877777776666665555544443
No 86
>COG4129 Predicted membrane protein [Function unknown]
Probab=33.44 E-value=91 Score=36.49 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=43.6
Q ss_pred hcCCcccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHH--
Q psy16876 776 QVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLL-- 853 (1124)
Q Consensus 776 ~sGarTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~-- 853 (1124)
..|.||=-+|+.+++.++++-++ -.|.++.||+.-++.+.--. .+.++..|..=....+-++++.+...++
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~~l------~~~~~~~A~i~AV~~l~~t~-~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~ 80 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAHLL------GLPQPAFAGISAVLCLSPTI-KRSLKRALQRLLGNALGAILAVLFFLLFGQ 80 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCCchHHHHHHHhhcccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 35777777777776666555532 35666677766554332211 2333333332222333222222222222
Q ss_pred -hhHHHHHHHHHHHHHHHH
Q psy16876 854 -DVDYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 854 -~l~~GI~vGI~lsll~~v 871 (1124)
++.+|+.+.+++.++..+
T Consensus 81 ~~~~~~v~~~i~i~~~~~~ 99 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLL 99 (332)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555
No 87
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=33.06 E-value=2.4e+02 Score=32.30 Aligned_cols=63 Identities=13% Similarity=-0.096 Sum_probs=33.5
Q ss_pred HHHHhhc-chhHHHHHHHHHHHHHhhhhHHHHHHHhcCc--chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy16876 800 GPFFETL-PYCVLTSIVIVAVKGMLNQVKDLKLAFKESY--TEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 800 ~pll~~I-P~avLAaiLI~vg~~mi~~~~~i~~l~r~~~--~D~~v~i~tfl~~l~~~l~~GI~vGI~lsll~~v 871 (1124)
..++..- +.+++.|++....+++++. .-+...++..+ .++ ..++.-+..++++|+++|-.+-+
T Consensus 38 ~~~~~~~~~~ai~~glvwgl~I~~lDR-~ivss~~~~~~~~~~~--------~~~~~R~~lAvliaivIs~pl~l 103 (301)
T PF14362_consen 38 YTVFGGPVWAAIPFGLVWGLVIFNLDR-FIVSSIRKSDGSRKRL--------LQALPRLLLAVLIAIVISEPLEL 103 (301)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHH-HHHhccccccchHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344432 6777777777778888863 23444444433 121 12233455566666666654444
No 88
>PRK02868 hypothetical protein; Provisional
Probab=32.73 E-value=3.3e+02 Score=30.62 Aligned_cols=115 Identities=10% Similarity=0.206 Sum_probs=56.7
Q ss_pred CchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHH----------HHHHHHH-HHHHHHhhcchh
Q psy16876 741 DSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCV----------LLVLILL-YIGPFFETLPYC 809 (1124)
Q Consensus 741 d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgv----------l~ll~ll-fl~pll~~IP~a 809 (1124)
+-.+.++-.+.++++++++|-.--+|+..-=.-.+..|-+....-++... .++..++ .++-.+-.+|--
T Consensus 70 eqq~~ll~~s~~~~~s~lig~~lL~g~il~~I~~~s~g~~v~~~~~~~~s~~~lp~l~lL~fl~tLlI~lG~~L~iiPGI 149 (245)
T PRK02868 70 EQQQILLKASAASTFSGLIGNTLLLGGILTLIQLVSAGQRVSALRAIGASAPILPKLLILIFLTTLLIQLGFMLVVVPGI 149 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33457888899999999998544333333323333344443222221111 1111111 133334445544
Q ss_pred HHHHHHHHHHHHHhh----hhHHHHHHHhcCcchhHHHHHHHHHHHHHhh
Q psy16876 810 VLTSIVIVAVKGMLN----QVKDLKLAFKESYTEACVWCLTFLSVVLLDV 855 (1124)
Q Consensus 810 vLAaiLI~vg~~mi~----~~~~i~~l~r~~~~D~~v~i~tfl~~l~~~l 855 (1124)
.++-.+-.+-+-++. -...++..||..+..+....+.++.++...+
T Consensus 150 ~l~I~lsLa~vi~v~ek~~v~~Air~S~~l~~~~~~~i~p~il~Wll~k~ 199 (245)
T PRK02868 150 LLAIALSLSPVILVTEKMGIFASMRASMRLAWANMRLVAPAVLLWLLAKT 199 (245)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222221 2356788899988887666666665554433
No 89
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=32.69 E-value=78 Score=38.06 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=19.7
Q ss_pred CcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHh
Q psy16876 760 SCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFE 804 (1124)
Q Consensus 760 Gg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~ 804 (1124)
..+++.-.|.-|...--.-|--|.-|-+.|.++.+.+..+++...
T Consensus 44 avlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~g 88 (406)
T PF11744_consen 44 AVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLSG 88 (406)
T ss_pred HHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444433333344455444444444444434554433
No 90
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=32.11 E-value=2.1e+02 Score=30.87 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=49.7
Q ss_pred EEEEEEeccee---ecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEE
Q psy16876 906 IVILRIIGGMN---FINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISL 973 (1124)
Q Consensus 906 i~vvrl~G~Lf---F~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L 973 (1124)
+.++++.|.+. -.+...+.+.++.+. ..+..+.|+|+... ...|....+.+.+....+++.+..+
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~--~d~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKAR--EDDSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHH--hCCCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 56889999998 677888888888753 34568889998864 5678888788887777787766654
No 91
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=30.59 E-value=2.2e+02 Score=30.90 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=46.0
Q ss_pred EEEEEEecceeecc-------hHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEE
Q psy16876 906 IVILRIIGGMNFIN-------KDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHI 975 (1124)
Q Consensus 906 i~vvrl~G~LfF~n-------a~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l 975 (1124)
|.++.+.|+|.-.+ ...+.+.+++.. ..+..+.|||+... ...|.+....+.+..+.+++.+..++-
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~--~d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~~kpVia 75 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDAR--LDPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAAGKPVVV 75 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHh--hCCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 55666666664433 356777777653 45567899998654 778888888888877888877665433
No 92
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=30.18 E-value=5.4e+02 Score=32.65 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=43.8
Q ss_pred hHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEE
Q psy16876 920 KDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIV 976 (1124)
Q Consensus 920 a~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~ 976 (1124)
...+.+.|+++. ..+..+-||||......-+.+.++.|.+..+++++.|..++-.
T Consensus 78 l~~i~~~i~~A~--~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~ 132 (584)
T TIGR00705 78 LFDIVNAIRQAA--DDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAY 132 (584)
T ss_pred HHHHHHHHHHHh--cCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 456777777653 4567789999999888888889999999999999988876654
No 93
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=29.68 E-value=8.5e+02 Score=27.43 Aligned_cols=106 Identities=14% Similarity=0.235 Sum_probs=56.9
Q ss_pred hHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHH----------HHHHHH-HHHHHHhhcchhHHH
Q psy16876 744 QELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVL----------LVLILL-YIGPFFETLPYCVLT 812 (1124)
Q Consensus 744 qELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl----------~ll~ll-fl~pll~~IP~avLA 812 (1124)
+.++....+.++++++|..--+|+..--.-....|-+...-..+.+.. ++..++ .++-.+-.+|--.++
T Consensus 76 ~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~ivPGI~l~ 155 (248)
T PF06790_consen 76 NVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFIVPGIILA 155 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 468888899999999885554444433333333443333322222211 111111 144455677766665
Q ss_pred HHHHHHHHHHhh----hhHHHHHHHhcCcchhHHHHHHHHH
Q psy16876 813 SIVIVAVKGMLN----QVKDLKLAFKESYTEACVWCLTFLS 849 (1124)
Q Consensus 813 aiLI~vg~~mi~----~~~~i~~l~r~~~~D~~v~i~tfl~ 849 (1124)
..+-++-+-++. -+..++.-|+..+.++...+++.+.
T Consensus 156 I~lslap~ilv~ek~~i~~Amr~S~~Lt~~~~~ii~p~vL~ 196 (248)
T PF06790_consen 156 ILLSLAPIILVLEKKGIFDAMRASWKLTFGNFRIIIPAVLL 196 (248)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444433 2456777888888876655544443
No 94
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=29.67 E-value=5.6e+02 Score=26.90 Aligned_cols=21 Identities=24% Similarity=0.331 Sum_probs=12.9
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q psy16876 780 KTQLASGVSCVLLVLILLYIG 800 (1124)
Q Consensus 780 rTrlagivtgvl~ll~llfl~ 800 (1124)
+|.+...+.+.++.++..++.
T Consensus 74 ~t~~~C~i~s~~~~~~~~~~~ 94 (185)
T PF04647_consen 74 KTFFRCFIFSVLIFIIIILLI 94 (185)
T ss_pred CCChHHHHHHHHHHHHHHHHH
Confidence 667776666666655554544
No 95
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=29.54 E-value=2.2e+02 Score=30.80 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=45.7
Q ss_pred EEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEE
Q psy16876 906 IVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISL 973 (1124)
Q Consensus 906 i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L 973 (1124)
|.+++++|.+. .+.+.+.+.++++. ..+..+.|||+... ..-|.+..+.|.+....++ .|..+
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~--~d~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~-~~kpv 64 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIK--DDKSIKALLLRINS-PGGTVVASEEIYEKLKKLK-AKKPV 64 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHh--hCCCccEEEEEecC-CCCCHHHHHHHHHHHHHhc-CCCCE
Confidence 67889999998 67888888888753 34567889998863 4557777777777666666 24443
No 96
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=28.80 E-value=2e+02 Score=30.06 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=45.6
Q ss_pred ccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHH
Q psy16876 766 SSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCL 845 (1124)
Q Consensus 766 ~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~ 845 (1124)
-+..|+.+...... +.+..++.++.+++.+.....+.+++| ++|.++...+..+.+.. .+|. .+++
T Consensus 57 ls~~R~~~s~~~~~-~~v~~~Fi~~~~~~~~~~~~g~~~~l~--~~as~~~t~a~f~~~~~-~mR~----------~~l~ 122 (163)
T PF10688_consen 57 LSAVRNFVSIRTRS-RWVMAVFIALSLVMGLFTWQGWIELLP--YAASVLGTIALFMLDGI-KMRI----------LMLV 122 (163)
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhcCch-hHHH----------HHHH
Confidence 34556666665553 333334444444444434566777776 45666666666666422 2311 2333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q psy16876 846 TFLSVVLLDVDYGLGIGVLCSLIFV 870 (1124)
Q Consensus 846 tfl~~l~~~l~~GI~vGI~lsll~~ 870 (1124)
..+.-+..++..|=..|++.-.++.
T Consensus 123 ~~~~w~~~n~~igS~~g~l~e~~~~ 147 (163)
T PF10688_consen 123 GTLCWLIYNILIGSWGGTLMEALFI 147 (163)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3344444556555555555544443
No 97
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=28.63 E-value=3.1e+02 Score=34.82 Aligned_cols=60 Identities=8% Similarity=0.154 Sum_probs=34.2
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHHHhcCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy16876 798 YIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVV 872 (1124)
Q Consensus 798 fl~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~v~i~tfl~~l~~~l~~GI~vGI~lsll~~v~ 872 (1124)
+++.++..-|.....++.+.+.+.++..+..- ...|+. .+++-..|+++|++++.+.|..
T Consensus 429 ~~~~~~~~~p~~~~~g~~~~v~f~~~~~~~n~------~~~d~~---------~f~n~~la~l~G~~~a~l~~~l 488 (650)
T PF04632_consen 429 FLGGLLMARPRTAYIGLGFAVFFLLLLGPGNP------YSYDFA---------TFLNRALAILLGIVIAALVFRL 488 (650)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHhcCCCC------CCCCHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666665555444322111 223332 2456677888888888777764
No 98
>KOG1144|consensus
Probab=28.38 E-value=2.6e+02 Score=35.98 Aligned_cols=30 Identities=23% Similarity=0.158 Sum_probs=21.5
Q ss_pred cchHHHHHHHHHHHHHHHcCcEEEEEecCc
Q psy16876 951 VDTSTVKSFLDLYKELMEQGISLHIVKLLE 980 (1124)
Q Consensus 951 IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~ 980 (1124)
+-+|.+++|..|++.|+...+.+.=+|+-|
T Consensus 827 vqastlgslealleflk~~kIPv~gi~IGP 856 (1064)
T KOG1144|consen 827 VQASTLGSLEALLEFLKTVKIPVSGIGIGP 856 (1064)
T ss_pred EEecccchHHHHHHHHhhcCcccccccccc
Confidence 345677888888888888777666566543
No 99
>KOG0579|consensus
Probab=28.05 E-value=2.7e+02 Score=35.30 Aligned_cols=32 Identities=16% Similarity=0.474 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHhH--HHHHhhhhhhHHHHH
Q psy16876 368 KMEAHVRAQMAKRQKDH--EEANASRKLTVEQKR 399 (1124)
Q Consensus 368 ~~e~~v~~q~~~r~~~h--~~~n~~r~~~~~~~~ 399 (1124)
++|.+-+++|+.-++.| +.+|++|++--+|.+
T Consensus 845 nlErqQkq~iE~~Eq~h~~rlR~eakRir~EQek 878 (1187)
T KOG0579|consen 845 NLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEK 878 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46666666666555543 456666666555443
No 100
>PRK02509 hypothetical protein; Provisional
Probab=27.98 E-value=6e+02 Score=33.98 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=6.0
Q ss_pred HHHHHHhhccCc
Q psy16876 1042 IVNIVLSLFPIL 1053 (1124)
Q Consensus 1042 ~~~~~~~~~P~~ 1053 (1124)
..+.+...-|++
T Consensus 651 i~eRV~~iAPFL 662 (973)
T PRK02509 651 INQRIRAIAPFL 662 (973)
T ss_pred HHHHHHHhCCeE
Confidence 444455555554
No 101
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=27.04 E-value=1.5e+02 Score=31.26 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=14.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q psy16876 846 TFLSVVLLDVDYGLGIGVLCSL 867 (1124)
Q Consensus 846 tfl~~l~~~l~~GI~vGI~lsl 867 (1124)
|.++++++=+.||+.+|-.+|+
T Consensus 133 TiiT~~CiyiLyGlFIGYSIsf 154 (173)
T PF11085_consen 133 TIITTLCIYILYGLFIGYSISF 154 (173)
T ss_pred HHHHHHHHHHHHHHHhceeehh
Confidence 4556666667788888876553
No 102
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=26.46 E-value=7.3e+02 Score=25.63 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=14.8
Q ss_pred CCCccchhHHHHHHHHHHHHHHH
Q psy16876 702 PPPFYLIPKLMLDGLFISIVAFS 724 (1124)
Q Consensus 702 lP~f~~~~~ll~~~~~iaiv~~~ 724 (1124)
+|+|+.+.+++..++-..++.++
T Consensus 37 lP~~~~~~~l~~~G~~~~ii~iv 59 (169)
T PF13197_consen 37 LPEFNDWGELFVDGLKAFIISIV 59 (169)
T ss_pred CCCchHHHHHHHHHHHHHHHHHH
Confidence 56677777777777655555444
No 103
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=26.29 E-value=75 Score=30.10 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=41.6
Q ss_pred CCcEEEEEccCCCccchHHHHHHHHHHHHHHH-cCcEEEEEecCchhhhhhcCc
Q psy16876 937 YPKQIILDMMSLSSVDTSTVKSFLDLYKELME-QGISLHIVKLLEPVKQVNSHP 989 (1124)
Q Consensus 937 ~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~-~gi~L~l~~l~~~v~~vl~~~ 989 (1124)
++...++|+.+..|+.|||+..|..+.-+.++ -++++++-|-++-..++-..+
T Consensus 45 ~ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~~ipWQ~KSLp 98 (112)
T COG5439 45 DPSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSKNIPWQMKSLP 98 (112)
T ss_pred ChHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCCCCcchhcccc
Confidence 46679999999999999999999999888775 467788777666555554333
No 104
>COG4129 Predicted membrane protein [Function unknown]
Probab=26.10 E-value=1.6e+02 Score=34.58 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy16876 854 DVDYGLGIGVLCSLIFV 870 (1124)
Q Consensus 854 ~l~~GI~vGI~lsll~~ 870 (1124)
.+..|+++|+.++++++
T Consensus 132 ~~~vG~~~a~lvn~~~~ 148 (332)
T COG4129 132 LVFVGVGVAFLVNLVMP 148 (332)
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 44455555555555544
No 105
>PF02308 MgtC: MgtC family; InterPro: IPR003416 The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known, but it is thought that MgtC may act as an accessory protein for MgtB, thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins.; GO: 0016020 membrane
Probab=25.97 E-value=3.1e+02 Score=27.73 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=15.8
Q ss_pred hhhHHHhhcCCcc-cchhHHHHHHHHHHH
Q psy16876 769 SRSLVQLQVGGKT-QLASGVSCVLLVLIL 796 (1124)
Q Consensus 769 srSav~~~sGarT-rlagivtgvl~ll~l 796 (1124)
-|---+..+|-|| .+.++..++..++..
T Consensus 14 ERe~~~~~aG~RTf~Lv~l~g~l~~~l~~ 42 (134)
T PF02308_consen 14 EREWRGKPAGLRTFALVSLAGALSALLSS 42 (134)
T ss_pred hcccccCCCCccchHHHHHHHHHHHHHHH
Confidence 3444446678887 555555555555544
No 106
>KOG2780|consensus
Probab=25.00 E-value=75 Score=35.62 Aligned_cols=19 Identities=21% Similarity=0.495 Sum_probs=13.5
Q ss_pred eEEEcCCcchhhhhhhhhh
Q psy16876 523 VIVVEGGPKQQSKFKRLMM 541 (1124)
Q Consensus 523 ~VvVeGG~kAi~aY~~LM~ 541 (1124)
++-.+-||++++.|..+..
T Consensus 165 iihlP~GPT~~Fkls~~~~ 183 (302)
T KOG2780|consen 165 IIHLPNGPTAYFKLSNVVL 183 (302)
T ss_pred EEecCCCCceEEEeecccc
Confidence 4445569999999877654
No 107
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=24.90 E-value=8.8e+02 Score=30.24 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHHHHhhhhhhhhccC
Q psy16876 745 ELLASGVSNIFASFFS 760 (1124)
Q Consensus 745 ELiA~GlaNivgglfG 760 (1124)
-+-+.|+|.++|+++.
T Consensus 259 l~a~~gvGai~Gal~~ 274 (524)
T PF05977_consen 259 LLAAFGVGAILGALLL 274 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677777766653
No 108
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=24.79 E-value=2.3e+02 Score=36.66 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=11.6
Q ss_pred cchhHHHHHHHHHHHHHh
Q psy16876 806 LPYCVLTSIVIVAVKGML 823 (1124)
Q Consensus 806 IP~avLAaiLI~vg~~mi 823 (1124)
-|...++|.+.+..+.++
T Consensus 132 ~pllll~GalwY~l~sll 149 (701)
T TIGR01667 132 EPLLILAGTLWYGLLTLI 149 (701)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666677776666665
No 109
>KOG0163|consensus
Probab=24.53 E-value=1.1e+02 Score=38.92 Aligned_cols=77 Identities=27% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccCCchhhHHHHHHHHHHHHhHHHHHhhh----
Q psy16876 316 KERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASR---- 391 (1124)
Q Consensus 316 k~rk~~rr~~~~~~~~~k~~~~~~~~~~p~~~k~~~~n~~~v~~~~a~~dpt~~e~~v~~q~~~r~~~h~~~n~~r---- 391 (1124)
+||++ |...+++..+|..++-. +.|.+.|..++|-+++..++-+.|
T Consensus 935 ~ER~r-rEaeek~rre~ee~k~~-----------------------------k~e~e~kRK~eEeqr~~qee~e~~l~~e 984 (1259)
T KOG0163|consen 935 AERKR-REAEEKRRREEEEKKRA-----------------------------KAEMETKRKAEEEQRKAQEEEERRLALE 984 (1259)
T ss_pred HHHHh-hhhhHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred ---hhhHHHHHHHHHHhhccccccceeeeeeech
Q psy16876 392 ---KLTVEQKREKKIRKIKEDTSLEVHVALRISN 422 (1124)
Q Consensus 392 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (1124)
+|.++.+++.+.+...|.......+..|+.|
T Consensus 985 ~q~qla~e~eee~k~q~~~Eqer~D~~la~RlA~ 1018 (1259)
T KOG0163|consen 985 LQEQLAKEAEEEAKRQNQLEQERRDHELALRLAN 1018 (1259)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
No 110
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=23.23 E-value=6e+02 Score=34.42 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=7.4
Q ss_pred CCCCccccCCCC
Q psy16876 127 DKPTPLILDSEG 138 (1124)
Q Consensus 127 ~~~~~~~~d~~g 138 (1124)
.||..++++..+
T Consensus 151 LKPeNILL~s~~ 162 (1021)
T PTZ00266 151 LKPQNIFLSTGI 162 (1021)
T ss_pred CcHHHeEeecCc
Confidence 467777776543
No 111
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=23.19 E-value=6e+02 Score=28.21 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=18.5
Q ss_pred ccchhHHHHHHHhhhhhhccccc
Q psy16876 661 PIPTEMIVIVAGALLSSILDVKH 683 (1124)
Q Consensus 661 ~IP~~LI~Ii~gtlia~~lg~~~ 683 (1124)
..+..++++++|++++-.++.++
T Consensus 54 ~~~~vi~slvlG~iiGe~l~ie~ 76 (226)
T PF04474_consen 54 NPLLVILSLVLGTIIGELLDIED 76 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999988753
No 112
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=23.18 E-value=1.7e+02 Score=29.87 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=41.6
Q ss_pred EEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHH
Q psy16876 908 ILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELM 967 (1124)
Q Consensus 908 vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~ 967 (1124)
+++++|++.-.+.+.+.+.+.++. ..+..+.|+|+.... .-|.++...|.+....++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~--~d~~~~~ivl~~~s~-Gg~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAE--ADNSVKAIVLEVNTP-GGRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHH--hCCCCceEEEEEECC-CcCHHHHHHHHHHHHHhC
Confidence 478899999999999999998763 344567888887643 447777766666665555
No 113
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=23.14 E-value=1.9e+02 Score=37.50 Aligned_cols=21 Identities=5% Similarity=0.241 Sum_probs=13.5
Q ss_pred CCcccchhhhhhhhHhhhhcC
Q psy16876 1092 VPPIVGIYMAVFPVIIYMCMG 1112 (1124)
Q Consensus 1092 ~~p~~Gly~~~~~~~~y~~fg 1112 (1124)
...-||+.+.|+.+++-..|.
T Consensus 470 ~~~~Y~~a~~fiT~~vll~~~ 490 (704)
T TIGR01666 470 RSNNYSFATFFITLLVLLCFN 490 (704)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 346788877777766655443
No 114
>KOG4538|consensus
Probab=22.93 E-value=85 Score=30.55 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHH--HHhhhhhhHHHH
Q psy16876 375 AQMAKRQKDHEE--ANASRKLTVEQK 398 (1124)
Q Consensus 375 ~q~~~r~~~h~~--~n~~r~~~~~~~ 398 (1124)
+|.++|+++|++ +|+.|+|+-|.+
T Consensus 70 k~~~~rqeKkqRrvEn~kRRLeNERk 95 (130)
T KOG4538|consen 70 KQVQERQEKKQRRVENEKRRLENERK 95 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 677888888876 588888877544
No 115
>COG2985 Predicted permease [General function prediction only]
Probab=22.80 E-value=2e+02 Score=35.22 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=44.0
Q ss_pred CCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q psy16876 739 KIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVI 816 (1124)
Q Consensus 739 ~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI 816 (1124)
+...|.++...|++=.+++. |-.. .+.|.++.. .+|..--..|++..++-+++.++++-++.-++...++|++.
T Consensus 422 P~~An~~lrelGl~lFLA~V-Gl~a-G~~f~~tL~--~~Gl~~ig~g~lit~vp~i~~~llg~~v~kmn~~~l~G~la 495 (544)
T COG2985 422 PPGALLALRELGLALFLAGV-GLSA-GSGFVNTLT--GSGLQIIGYGALVTLVPVIIVFLLGRYVLKMNWLLLCGALA 495 (544)
T ss_pred ChhHHHHHHHHHHHHHHHhh-cccc-ccchHhhhc--ccchhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHhhHHh
Confidence 45678899999998887766 3333 335555544 44433323333333444444446677777777777777665
No 116
>TIGR00930 2a30 K-Cl cotransporter.
Probab=22.77 E-value=2.9e+02 Score=37.19 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=19.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy16876 780 KTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVA 818 (1124)
Q Consensus 780 rTrlagivtgvl~ll~llfl~pll~~IP~avLAaiLI~v 818 (1124)
+|+..+++...++.+++++++.+-...|......++.++
T Consensus 436 ~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~fLl~Y~ 474 (953)
T TIGR00930 436 GEPLRAYLLTAFIAEGFILIAELNTIAPIISNFFLASYA 474 (953)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466666655444444444555555555554444444443
No 117
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.43 E-value=2.5e+02 Score=31.40 Aligned_cols=26 Identities=12% Similarity=-0.134 Sum_probs=12.6
Q ss_pred CCCchhHHHHHhhhhhhhhccCcccc
Q psy16876 739 KIDSNQELLASGVSNIFASFFSCIPF 764 (1124)
Q Consensus 739 ~~d~nqELiA~GlaNivgglfGg~P~ 764 (1124)
..+.+-..--+=++.=++-+++|+-+
T Consensus 174 ~~~~~~d~n~El~a~G~aNi~s~~~g 199 (280)
T PF00916_consen 174 KTGYRIDPNQELIALGLANIVSGLFG 199 (280)
T ss_pred cccccCCcHHHHHHhhhccccchhhc
Confidence 33344444444455555555555543
No 118
>PRK10983 putative inner membrane protein; Provisional
Probab=22.37 E-value=1.2e+03 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhH
Q psy16876 786 GVSCVLLVLILLYIGPFFETLPYCV 810 (1124)
Q Consensus 786 ivtgvl~ll~llfl~pll~~IP~av 810 (1124)
+++.+.++..+..+++.+.++|.++
T Consensus 243 llg~l~~~~~i~~~G~~~~~ip~~~ 267 (368)
T PRK10983 243 LLTVLMILSCLVQLGPLPVLIPAII 267 (368)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333333445788888899763
No 119
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=22.32 E-value=1.2e+03 Score=28.03 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q psy16876 810 VLTSIVIVAVKGMLNQVKDL 829 (1124)
Q Consensus 810 vLAaiLI~vg~~mi~~~~~i 829 (1124)
+++.-.+-++.++.+...+.
T Consensus 282 Ai~TSFlGv~lgl~d~l~d~ 301 (403)
T PRK15132 282 ALATSFLGVALGLFDYLADL 301 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555677777755444
No 120
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.28 E-value=2.6e+02 Score=31.84 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.6
Q ss_pred hhHHHHHHHhhhhhhccccc
Q psy16876 664 TEMIVIVAGALLSSILDVKH 683 (1124)
Q Consensus 664 ~~LI~Ii~gtlia~~lg~~~ 683 (1124)
++++++.+|++.+|+-|..+
T Consensus 154 SaliGv~~GA~qGyfgg~vd 173 (341)
T COG4239 154 SALIGVLAGALQGYFGGWVD 173 (341)
T ss_pred HHHHHHHHHHHhhhhccchH
Confidence 77999999999999877643
No 121
>KOG2891|consensus
Probab=22.19 E-value=4.8e+02 Score=29.46 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy16876 317 ERKKLRRQNRREAWK 331 (1124)
Q Consensus 317 ~rk~~rr~~~~~~~~ 331 (1124)
|||++...+-+++++
T Consensus 281 errqieterlrqeee 295 (445)
T KOG2891|consen 281 ERRQIETERLRQEEE 295 (445)
T ss_pred HHhhhhHHHHhhhHh
Confidence 455554444333333
No 122
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=22.08 E-value=7.5e+02 Score=25.21 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=17.9
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy16876 828 DLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVV 872 (1124)
Q Consensus 828 ~i~~l~r~~~~D~~v~i~tfl~~l~~~l~~GI~vGI~lsll~~v~ 872 (1124)
.++...+......+.+.-+|. .|+...+..|++.++..|++
T Consensus 48 ~i~~~R~~~~~g~isf~~a~~----~g~~~~~ia~li~~v~~~i~ 88 (163)
T PF13858_consen 48 AIRRYRKKYNGGFISFGQAFK----VGFLISLIAGLISAVFQYIY 88 (163)
T ss_pred HHHHHHHHccCCCeeHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444444333333433333343 34444445555555555543
No 123
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=21.55 E-value=4.6e+02 Score=33.33 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=12.3
Q ss_pred cchhHHHHHHHHHHHH
Q psy16876 806 LPYCVLTSIVIVAVKG 821 (1124)
Q Consensus 806 IP~avLAaiLI~vg~~ 821 (1124)
+=.+.+||+++.+|+.
T Consensus 491 LtLpgIAGiILtIGma 506 (604)
T PRK12933 491 LTLPGIAGLVLTVGMA 506 (604)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 3467899999988764
No 124
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=21.44 E-value=1.4e+03 Score=29.33 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=17.2
Q ss_pred CCCchhHHHHHhhhhhhhhcc
Q psy16876 739 KIDSNQELLASGVSNIFASFF 759 (1124)
Q Consensus 739 ~~d~nqELiA~GlaNivgglf 759 (1124)
...+..-+.+|=+|.++|+++
T Consensus 484 ~~pPR~~f~~Qiig~~vg~~v 504 (654)
T TIGR00728 484 KAPPRAQFAAQLIGTIVGSLV 504 (654)
T ss_pred CCChHHHHHHHHHHHHHHHHH
Confidence 456778889999999998887
No 125
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=21.24 E-value=3.9e+02 Score=29.00 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=37.7
Q ss_pred chHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecC
Q psy16876 919 NKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLL 979 (1124)
Q Consensus 919 na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~ 979 (1124)
....+.+.++++. ..+..+.|||+... ..-|.++.+.+.+....+++ |.. +++.++
T Consensus 26 ~~~~l~~~l~~a~--~d~~i~~Vvl~~~s-~gg~~~~~~~l~~~l~~~~~-~Kp-ViA~v~ 81 (214)
T cd07022 26 SYEGIAAAIRAAL--ADPDVRAIVLDIDS-PGGEVAGVFELADAIRAARA-GKP-IVAFVN 81 (214)
T ss_pred cHHHHHHHHHHHh--hCCCCcEEEEEEeC-CCCcHHHHHHHHHHHHHHhc-CCC-EEEEEC
Confidence 3567777887753 34567899999865 34577777778777777776 444 344443
No 126
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=21.22 E-value=1.4e+03 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=22.5
Q ss_pred CCchhHHHHHhhhhhhhhccCcccccccch
Q psy16876 740 IDSNQELLASGVSNIFASFFSCIPFASSLS 769 (1124)
Q Consensus 740 ~d~nqELiA~GlaNivgglfGg~P~t~s~s 769 (1124)
..-.|+|++.|.|--+++.|++--+..-|+
T Consensus 124 ~~~~r~li~~GaaAGlaAaF~APi~G~lFa 153 (445)
T cd03684 124 EAKRREILSAAAAAGVAVAFGAPIGGVLFS 153 (445)
T ss_pred HHHHHHHHHHHHhhhhHHhcCCccchhhhh
Confidence 345688999999999999997655444444
No 127
>PRK12438 hypothetical protein; Provisional
Probab=21.18 E-value=7.6e+02 Score=33.23 Aligned_cols=12 Identities=25% Similarity=0.144 Sum_probs=6.4
Q ss_pred HHHHHHhhccCc
Q psy16876 1042 IVNIVLSLFPIL 1053 (1124)
Q Consensus 1042 ~~~~~~~~~P~~ 1053 (1124)
..+.+...-|+|
T Consensus 573 ~~eRV~kvAPfL 584 (991)
T PRK12438 573 PKERVQRVAPWL 584 (991)
T ss_pred HHHHHHhhCCcE
Confidence 445555555654
No 128
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=21.07 E-value=1.3e+02 Score=28.85 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCCCCCCC
Q psy16876 327 REAWKEEQEKIRLGLEPPPE 346 (1124)
Q Consensus 327 ~~~~~~k~~~~~~~~~~p~~ 346 (1124)
+.-+++++++++.|+-.||+
T Consensus 77 ~aI~kqR~K~~keGk~tpp~ 96 (96)
T PF10200_consen 77 RAIRKQRDKQIKEGKYTPPP 96 (96)
T ss_pred HHHHHHHHHHHHccCCCCCC
Confidence 34456777889999999986
No 129
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=20.86 E-value=1.1e+02 Score=28.76 Aligned_cols=78 Identities=9% Similarity=0.101 Sum_probs=49.4
Q ss_pred cEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEcc-CCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchhh
Q psy16876 905 GIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMM-SLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVK 983 (1124)
Q Consensus 905 ~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s-~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v~ 983 (1124)
+|..++++|.+.-.....+...+.+... ....-.+++|++ .+..++..+......+......+=.++.+++-++-.+
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~--~~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~AvV~~~~~~~ 78 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIA--DHGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAVVGDSEWIR 78 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHT--TSSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEEE-SSCCCH
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHh--cCCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEEEECcHHHH
Confidence 4678999999988888888888877642 334567999999 9888888776655543322111113566666554444
Q ss_pred h
Q psy16876 984 Q 984 (1124)
Q Consensus 984 ~ 984 (1124)
.
T Consensus 79 ~ 79 (109)
T PF11964_consen 79 M 79 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 130
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=20.86 E-value=4e+02 Score=29.55 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHhhhh
Q psy16876 809 CVLTSIVIVAVKGMLNQV 826 (1124)
Q Consensus 809 avLAaiLI~vg~~mi~~~ 826 (1124)
.++|..++..|+..+++|
T Consensus 72 ~imal~li~~Gi~ti~~W 89 (224)
T PF09930_consen 72 LIMALLLIYAGIYTIKKW 89 (224)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667777777666443
No 131
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.85 E-value=4.1e+02 Score=31.44 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHH--HHHHHhhcchh----HHHHHHHHHHHHHhhhhHHHHHHHhcCcchhH---HHHHHHHHHHHHhhH
Q psy16876 786 GVSCVLLVLILLY--IGPFFETLPYC----VLTSIVIVAVKGMLNQVKDLKLAFKESYTEAC---VWCLTFLSVVLLDVD 856 (1124)
Q Consensus 786 ivtgvl~ll~llf--l~pll~~IP~a----vLAaiLI~vg~~mi~~~~~i~~l~r~~~~D~~---v~i~tfl~~l~~~l~ 856 (1124)
+++|+++++..++ ++.+++.||.+ .||||++-.++..++. --.|.. .++.+++.+=.+.--
T Consensus 110 iVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a----------~~~~p~l~lpmv~~~ll~r~f~pr 179 (402)
T COG3135 110 IVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKA----------LPTQPLLVLPMVLAYLLARVFAPR 179 (402)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc----------cCCChHHHHHHHHHHHHHHHcCch
Confidence 5677777777655 78899999975 4555555555544431 123433 344444444444555
Q ss_pred HHHHHHHHHHHHHHH
Q psy16876 857 YGLGIGVLCSLIFVV 871 (1124)
Q Consensus 857 ~GI~vGI~lsll~~v 871 (1124)
|.+.+..+.+++.-.
T Consensus 180 ~aV~aalvvgv~va~ 194 (402)
T COG3135 180 YAVIAALVVGVLVAA 194 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555555544
No 132
>PRK05326 potassium/proton antiporter; Reviewed
Probab=20.85 E-value=1.7e+03 Score=27.86 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=12.9
Q ss_pred ccchhHHHHHHHhhhhh
Q psy16876 661 PIPTEMIVIVAGALLSS 677 (1124)
Q Consensus 661 ~IP~~LI~Ii~gtlia~ 677 (1124)
.+|..+.-+++|.+++-
T Consensus 29 ~~P~ll~~il~GillGp 45 (562)
T PRK05326 29 GIPSLLLFLAIGMLAGE 45 (562)
T ss_pred CCcHHHHHHHHHHHhCc
Confidence 68888888888877763
No 133
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=20.72 E-value=5.3e+02 Score=30.08 Aligned_cols=39 Identities=13% Similarity=0.295 Sum_probs=29.7
Q ss_pred cCCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhh
Q psy16876 738 YKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQ 776 (1124)
Q Consensus 738 ~~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~ 776 (1124)
+-.+.++.++--+++|++|+++.|..+...+....++..
T Consensus 17 ~al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~ 55 (326)
T PF01384_consen 17 RALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPS 55 (326)
T ss_pred CccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhcccccc
Confidence 357788999999999999999987776655555444443
No 134
>COG1289 Predicted membrane protein [Function unknown]
Probab=20.65 E-value=4.7e+02 Score=33.66 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy16876 854 DVDYGLGIGVLCSLIFVV 871 (1124)
Q Consensus 854 ~l~~GI~vGI~lsll~~v 871 (1124)
+...|.++|++++++++-
T Consensus 483 d~~iG~lIa~~~a~~v~~ 500 (674)
T COG1289 483 DTLLGSLIALALAFLVWP 500 (674)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777777765544
No 135
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.52 E-value=2.5e+02 Score=35.21 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccCCchhhHHHHHHHHHHHHhHHHHHhhhhhhHH
Q psy16876 317 ERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVE 396 (1124)
Q Consensus 317 ~rk~~rr~~~~~~~~~k~~~~~~~~~~p~~~k~~~~n~~~v~~~~a~~dpt~~e~~v~~q~~~r~~~h~~~n~~r~~~~~ 396 (1124)
|.|+ +|+....|++++.++.|+-+ .-|+.-|+..++|+..-|+.|-+|++.+.
T Consensus 4 ~~~~-~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (567)
T PLN03086 4 ELRR-AREKLEREQRERKQRAKLKL--------------------------ERERKAKEEAAKQREAIEAAQRSRRLDAI 56 (567)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhccccccceeeee
Q psy16876 397 QKREKKIRKIKEDTSLEVHVAL 418 (1124)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~ 418 (1124)
+..+|..+++.|--..+-.++|
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~~~ 78 (567)
T PLN03086 57 EAQIKADQQMQESLQAGRGIVF 78 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCeEE
No 136
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=20.31 E-value=2.9e+02 Score=31.24 Aligned_cols=42 Identities=31% Similarity=0.506 Sum_probs=37.2
Q ss_pred CCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEec
Q psy16876 936 PYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKL 978 (1124)
Q Consensus 936 ~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l 978 (1124)
.++..++|| +..+.+|..+...|.++.+++++.|+.+.++.-
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 356789998 789999999999999999999999999888754
Done!