RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16876
(1124 letters)
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor
prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Length = 143
Score = 72.1 bits (177), Expect = 5e-15
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 882 LGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKL-SLSSEPYPKQ 940
LG+L D+++Y++ D YE ++PGI I +I + + N D + + ++
Sbjct: 7 LGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHT 66
Query: 941 IILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQV 985
+ILD ++ +D+ VK+ + KE + GI +++ V
Sbjct: 67 VILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVND 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.7 bits (193), Expect = 8e-15
Identities = 96/608 (15%), Positives = 185/608 (30%), Gaps = 169/608 (27%)
Query: 531 KQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIMISGFTTGTAI 590
+ Q ++K ++ +E+ + + + K+ D+ S +
Sbjct: 13 EHQYQYKDILSV---FEDAFVDNFDCKDVQ-----------------DMPKSILSK---- 48
Query: 591 LVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHF 650
+I H+ K + L + + F + VL I
Sbjct: 49 ----EEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKF-----VEEVLRINYKFL 94
Query: 651 KSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLS---NVGKIPIGLPSPQPPPF-- 705
S I+ P + I L + V KYN+S K+ L +P
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 706 -------------------YLIPKLMLDGLF-ISIVAFSINISMASILAKKKYKIDSNQE 745
Y + M +F +++ + ++ +L K Y+ID N
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 746 LLASGVSNI----------FASFFSCIPFASSLSRSLVQLQVGGKTQLAS-GVSCVLLVL 794
+ SNI P+ + L LV L V + +SC +L+
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNAKAWNAFNLSCKILL- 270
Query: 795 ILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLD 854
T + +T + A + + + ++ L +
Sbjct: 271 ----------TTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKS-----LLLKYLDCR 314
Query: 855 VDYGL------GIGVLCSLIFVVVTG--------QKVMVYKLGRLIDSNIYVEE-----D 895
L S+I + + V KL +I+S++ V E
Sbjct: 315 PQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 896 FYES-AI-----DVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLS 949
++ ++ +P I++ I + + V +K+ K SL E PK+ + + S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTISIPSI- 431
Query: 950 SVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLNQDDKDVGPKIFNKYKPF 1009
+L+L +L + +LH +++ N D D+ P ++Y
Sbjct: 432 ---------YLELKVKLENE-YALHR-SIVD---HYN--IPKTFDSDDLIPPYLDQY--- 472
Query: 1010 KQNEFDEIYHHTEYKKKHLSES------------------LKNKLRSKFKIVNIVLSLFP 1051
Y H + HL L+ K+R N S+
Sbjct: 473 -------FYSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 1052 ILEWLPNY 1059
L+ L Y
Sbjct: 523 TLQQLKFY 530
Score = 76.8 bits (188), Expect = 3e-14
Identities = 93/603 (15%), Positives = 171/603 (28%), Gaps = 188/603 (31%)
Query: 306 PVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQ- 364
V+ F+ + + K ++ + KEE + I + + LR+ + E VQ
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 365 --------------DPTKMEAHVRAQMAK-----RQKDHEEANASRKLTVEQKREKKIRK 405
P K E + M + R + + + K V R + K
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLK 139
Query: 406 IKED-TSLEVHVALRISNL----MR-----VLGTEAVQDP---TKMEAHV---------- 442
+++ L N+ + + + KM+ +
Sbjct: 140 LRQALLELRPA-----KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 443 -----------RAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKE---DTSLEVHVAVY 488
Q+ + +++ KL + + + R +K + L V
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----- 249
Query: 489 RVDDFSNPS--KKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKW 546
+ + N F + +C L T + V L H +
Sbjct: 250 -LLNVQNAKAWNAFNL--SCKILLTT------RFKQVTDFLSAATT--THISLDHHSMTL 298
Query: 547 EEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIM---ISGFTTGTAI---LVILSQIKHV 600
D E K K + L + +S +I L KHV
Sbjct: 299 TPD-----EVKSLLLKYLDC-RPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHV 350
Query: 601 FGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGV----VVILVSVLII------YND-- 648
K+ I +++ AE ++ + V I +L + +D
Sbjct: 351 NCDKLTTIIESS---LNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 649 ------HFKSKIQKNISFPIPTEMIVIVAGALLSSILDVK---------HK-----YNLS 688
H S ++K P E + ++ S L++K H+ YN
Sbjct: 406 VVVNKLHKYSLVEKQ-----PKESTI----SIPSIYLELKVKLENEYALHRSIVDHYN-- 454
Query: 689 NVGKIPIGLPSPQPPP------FY-----------------LIPKLMLDGLFI------S 719
IP S P FY L + LD F+
Sbjct: 455 ----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 720 IVAFSINISMASILAK-KKYK--IDSNQELLASGVSNIFASFFSCIPFASSLSRS----L 772
A++ + S+ + L + K YK I N V+ I +L S L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI---EENLICSKYTDL 567
Query: 773 VQL 775
+++
Sbjct: 568 LRI 570
Score = 36.4 bits (83), Expect = 0.059
Identities = 71/509 (13%), Positives = 146/509 (28%), Gaps = 159/509 (31%)
Query: 153 VVPTLKANIRAKKREEFHEKLKEKPTEDLSESKFFDPRI-------SAKSS-----VRTK 200
K N+ R + + KL++ E + S K+ +
Sbjct: 123 NQVFAKYNV---SRLQPYLKLRQALLELRPA-----KNVLIDGVLGSGKTWVALDVCLSY 174
Query: 201 RALKFHEPGKF-QQLAEQLRVKAQLAKLQ-------------ADISKNARKTGISSATKL 246
+ + F L + L LQ +D S N + S +L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 247 A-LIAPKME-------DD-QDEMPEVEWWDAV-----IMVEETYEKENNIKTSAITNLVE 292
L+ K + Q+ + W+A I++ T K+ T ++
Sbjct: 235 RRLLKSKPYENCLLVLLNVQN--AKA--WNAFNLSCKILL-TTRFKQV---TDFLSAATT 286
Query: 293 HPIQMKPPSDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEP---PPE--- 346
I + S LT E K L + + L P P E
Sbjct: 287 THISLDHHSMT---------LTPDEVKSLLLK-----Y--------LDCRPQDLPREVLT 324
Query: 347 --PKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIR 404
P R+S ++ E+++D + + + ++ + ++ + R
Sbjct: 325 TNP-RRLS----IIA-ESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 405 KIKEDTSL---EVHVALRISNLMRVLGTEAVQDPTKM--EAHVRAQMAKRQKD-----H- 453
K+ + S+ H+ + L + D + + H + + K+ K+
Sbjct: 373 KMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 454 ----------EEANASRKLTVEQKREKK------IRKIKEDTSLEVHVAVY------RVD 491
E R + V+ K + D H+ + +
Sbjct: 431 IYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHPE 488
Query: 492 DFSNPSKKF--------KVETNCNQLFMTGAVV-------MYKDCNVIVVEGGPKQQSKF 536
+ F K+ + +G+++ YK + + PK +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICDNDPKYERLV 545
Query: 537 KRLMMHRIKWEEDMIKSNEGKETPNKCVL 565
++ K EE++I S +L
Sbjct: 546 NAILDFLPKIEENLICS------KYTDLL 568
Score = 31.0 bits (69), Expect = 3.1
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 15/77 (19%)
Query: 992 NQDD--KDVGPK-IFNKYKP-FKQNEFDEIYH--HTEYKKKHLSESLKNKLRSKFK-IVN 1044
+D + K + + K + E D I L +L +K + V
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 1045 IVLSLFPILEWLPNYNW 1061
VL NY +
Sbjct: 85 EVLR--------INYKF 93
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate,
antisigma factor antagonist, ensemble structures,
transport protein; NMR {Mycobacterium bovis}
Length = 130
Score = 68.5 bits (168), Expect = 8e-14
Identities = 18/89 (20%), Positives = 39/89 (43%)
Query: 897 YESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTV 956
Y A VPG+V+ R + F N + + + + +L+ S VD + +
Sbjct: 7 YPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTAL 66
Query: 957 KSFLDLYKELMEQGISLHIVKLLEPVKQV 985
+ L EL+ +GI + ++ + +++
Sbjct: 67 DALDQLRTELLRRGIVFAMARVKQDLRES 95
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange,
membrane, transport protein; HET: MSE; 1.90A {Vibrio
cholerae} PDB: 3mgl_A*
Length = 130
Score = 62.7 bits (153), Expect = 7e-12
Identities = 12/99 (12%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 887 DSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMM 946
++ + E + + + + + G F + + + + P+ +IL +
Sbjct: 2 NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSI----QETPQILILRLK 57
Query: 947 SLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQV 985
+ +D + +++ ++ + ++GI + I V Q
Sbjct: 58 WVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQK 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 4e-11
Identities = 96/550 (17%), Positives = 169/550 (30%), Gaps = 171/550 (31%)
Query: 659 SFPIPTEMIVIVAGAL----LSSILDVKHKYNLSNVGKIPIGL-------------PSPQ 701
+PT +A L + + + + P L PS
Sbjct: 19 VLLVPTAS-FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 702 PPPFYLIPKLMLDGLFISIVAFSINI-SM-ASILAKKKYKIDSNQELLASGVSNIFASFF 759
++ L L F + +I ++ A +L + + +EL+ + ++ A
Sbjct: 78 GQFDQVL-NLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT---ARIM 132
Query: 760 SCIPFASSLSRSLVQLQVGGKTQLAS-----GVSCVLLV-LILLYIGPFFETLPYCVLTS 813
+ PF + +L + G QL + G + L LY +T Y VL
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-----QT--YHVLVG 185
Query: 814 IVIVAVKGMLNQVKDLKLAFKESYTEAC---VWCLTFLSVVLLDVDYGLGIGVLCSLIFV 870
+I L+++ L ++ +T+ W L S D DY L I + C LI V
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNT-PDKDYLLSIPISCPLIGV 243
Query: 871 V------VTGQKVMVYKLGRLIDS---------NIYV---------EEDFYESAIDVPGI 906
+ VT K++ + G L + E F+ S I
Sbjct: 244 IQLAHYVVTA-KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA--I 300
Query: 907 VILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTS-TVKSFLDLYKE 965
+L IG E YP + + S++ + V S +
Sbjct: 301 TVLFFIG----------VR-------CYEAYPNTSLPPSILEDSLENNEGVPSPM----- 338
Query: 966 LMEQGISLHIVKLLEPVKQVNSH-P--------LLNQDDKDV--GP-------------- 1000
L ++ ++ + V + NSH P L+N V GP
Sbjct: 339 LSISNLTQ--EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 1001 ---------KI-FNKYKPFKQNEFDEI---YHHTEY------------KKKHLS---ESL 1032
+I F++ K N F + + H+ K ++S + +
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 1033 K---------NKLRSKFKIVNIVLSLFPILEWLPNYNW----KNDLSH--DM----VSGF 1073
+ + LR +I + + LP W + +H D SG
Sbjct: 456 QIPVYDTFDGSDLRVLSG--SISERIVDCIIRLPV-KWETTTQFKATHILDFGPGGASGL 512
Query: 1074 TVAVLHIPQG 1083
V G
Sbjct: 513 GVLTHRNKDG 522
Score = 53.9 bits (129), Expect = 3e-07
Identities = 92/604 (15%), Positives = 175/604 (28%), Gaps = 220/604 (36%)
Query: 131 PLILDSEGRTIDITGKQVQLTHVVPTLKANIRAKK-REEFHEKLKEKPTEDLSE------ 183
PL L S G ++ +VPT + A + +E+F++ L E PTE +
Sbjct: 8 PLTL-SHG--------SLEHVLLVPT-ASFFIASQLQEQFNKILPE-PTEGFAADDEPTT 56
Query: 184 -----SKF--F-DPRISAKSSVRTKRALK-----FHEPGKFQQ------LAEQLRVKAQL 224
KF + + + + L F + + LA +L +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--CYLEGNDIHALAAKLLQENDT 114
Query: 225 AKLQA-DISKN---ARKTG---ISSATKLALIAPKMEDD---------Q--DEMPEVEWW 266
++ ++ KN AR + AL E + Q + +++
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD----DYF 170
Query: 267 DAVIMVE-----ETYE--KENNIKTSA--ITNLVEHPI-------------------QMK 298
+ E +TY + IK SA ++ L+ +
Sbjct: 171 E-----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 299 PPSD-MAK-PVYMP-VFLT------------DKERKKLRRQNR----------------- 326
P D + P+ P + + +LR +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 327 REAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQD-PTKMEAHVRAQMAKRQKDHE 385
++W+ +R + ++ +G + P + + + ++
Sbjct: 286 TDSWESFFVSVRKAIT-----------VLFFIGVRCYEAYPNTS---LPPSILEDSLENN 331
Query: 386 EANAS-----RKLTVEQKREKKIRKIKEDTSLE--VHVALRISNLMRVL-GTEAVQDPTK 437
E S LT EQ + + K V ++L V+ G P +
Sbjct: 332 EGVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG------PPQ 384
Query: 438 ----MEAHVRAQMAKRQKDHEEANAS-RKLTVEQKR-------------EKKIRKIKED- 478
+ +R A D S RKL R I +D
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-SNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 479 -------TSLEVHVAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPK 531
+ ++ + VY D S+ + + + +V DC I+
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLR---VLSGSI-----SERIV---DC--IIRL---- 486
Query: 532 QQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIMISGFTTGTAIL 591
+KWE + + K T +L + G S L + GT +
Sbjct: 487 -----------PVKWE----TTTQFKAT---HILDFGPGGASGLGV--LTHRNKDGTGVR 526
Query: 592 VILS 595
VI++
Sbjct: 527 VIVA 530
Score = 38.9 bits (90), Expect = 0.013
Identities = 41/244 (16%), Positives = 72/244 (29%), Gaps = 83/244 (34%)
Query: 927 ISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELME-------QGISLH--IVK 977
+ L + L +S S V+ S V F + + +G +H K
Sbjct: 55 TTPAELVGK------FLGYVS-SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 978 LLE-------------------------PVKQVNSHPLLNQ-DDKDVGPKIF-------N 1004
LL+ P + ++ L + + ++ N
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA--QLVAIFGGQGN 165
Query: 1005 KYKPFKQNEFDEIYHHTEYKK------KHLSESLKNKLRSKFKIVNIVLSLFPILEWL-- 1056
F+ E ++Y Y K +E+L +R+ + ILEWL
Sbjct: 166 TDDYFE--ELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 1057 ----PNYNWKNDLSHDMVSG----------FTVA--VLHIPQGMAYSSLGGVPPIV-GIY 1099
P+ ++ L +S + V +L G S L G G+
Sbjct: 222 PSNTPDKDY---LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 1100 MAVF 1103
AV
Sbjct: 279 TAVA 282
Score = 31.6 bits (71), Expect = 1.9
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 47/148 (31%)
Query: 820 KGMLNQVKDL---KLAFKESYTEACVWCLTFLSVVLLDV--DYGLGIGVLCSLIFVVVTG 874
+GM DL A ++ + A +LD+ + + + + F G
Sbjct: 1629 QGM---GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH----FGGEKG 1681
Query: 875 QKV------MVYKL---GRLIDSNIYVEEDF------YES-------------AIDVPGI 906
+++ M+++ G+L I+ E + + S A+ +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 907 VILRIIGGMNFINKDKVF--HKISKLSL 932
+ I D F H SL
Sbjct: 1742 AAFEDLKSKGLIPADATFAGH-----SL 1764
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain,
anion exchange, membrane, transport protein; HET: MSE;
1.60A {Wolinella succinogenes} PDB: 3oir_A*
Length = 135
Score = 59.3 bits (144), Expect = 1e-10
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 890 IYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLS 949
+ D + G+ I I G F D++ + + E PK IL M +
Sbjct: 8 GMDDPDATSKKVVPLGVEIYEINGPFFFGVADRLKGVLDVI----EETPKVFILRMRRVP 63
Query: 950 SVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQV 985
+D + + + + + ++G L + + + +
Sbjct: 64 VIDATGMHALWEFQESCEKRGTILLLSGVSDRLYGA 99
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB),
bicarbonate transport, anion T membrane protein, STAS
domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Length = 118
Score = 51.2 bits (123), Expect = 6e-08
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 897 YESAIDVP-GIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTST 955
+DVP +++LR+IG + F + +F + + +IL ++ +D
Sbjct: 8 APVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESR----LEGKRIVILKWDAVPVLDAGG 63
Query: 956 VKSFLDLYKELMEQGISLHIVKLLEPVKQV 985
+ +F K L +G L + + +
Sbjct: 64 LDAFQRFVKRL-PEGCELRVCNVEFQPLRT 92
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 41.3 bits (95), Expect = 0.002
Identities = 62/434 (14%), Positives = 125/434 (28%), Gaps = 13/434 (2%)
Query: 47 APVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPSTTAEKDNATYEKAMKIAQLQAQIQSKL 106
A P+P PA PA S PPA P + A + + ++ + +
Sbjct: 26 ACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEA 85
Query: 107 STGVLKPSVPGAKPPGAPATDKPTPLILDSEGRTIDITGKQVQLTHVVPTLKANIRAKKR 166
PS PA +P L + TI +Q + ++A +
Sbjct: 86 PDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQ 145
Query: 167 EEFHEKLKEKPTEDLSESKFFDPRISAKSSVRTKRALKFHEPGKFQQLAEQLR----VKA 222
+ E P ++ P K+Q LAE R +
Sbjct: 146 DAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYKYQVLAEMFRSMDTIVG 205
Query: 223 QLAKLQADISKNARKTGISSATKLALIAPKMEDDQDEMPEVEWWDAVIMVEETYEKENNI 282
L + + G+ + + + P E + +
Sbjct: 206 MLHNRSETPTFAKVQRGVQDMMRRRFEERNVGQIKTVYPAS----YRFRQERSVPTFKDG 261
Query: 283 KTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLE 342
+ L P+ + A + L +R+++ Q E KE + L
Sbjct: 262 TRRSDYQLTIEPLLEQEADGAAPQLTASRLL---QRRQIFSQKLVEHVKEHHKAFLASLS 318
Query: 343 PPPE-PKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREK 401
P P+ +++ + V D K E +R L + + EK
Sbjct: 319 PAMVVPEDQLTRWHPRFNVDEVPDIEPAALPQPPATEKLTTAQEVLARARNL-ISPRMEK 377
Query: 402 KIRKIKEDTSLEVHVALRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRK 461
+ ++ ++ L V + +R + E +
Sbjct: 378 ALSQLALRSAAPSSPGSPRPALPATPPATPPAASPSALKGVSQDLLERIRAKEAQKQLAQ 437
Query: 462 LTVEQKREKKIRKI 475
+T ++E++++++
Sbjct: 438 MTRCPEQEQRLQRL 451
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima,
phosphoprotein, structural GENO PSI-2, protein structure
initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Length = 125
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 905 GIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYK 964
+VIL +N N + L +I L + + S+D+ ++ +++ K
Sbjct: 21 DVVILMPNKELNIENAHLFKKWVFDEFL--NKGYNKIFLVLSDVESIDSFSLGVIVNILK 78
Query: 965 ELMEQGISLHIVKLLEPVKQV 985
+ G +V E V++V
Sbjct: 79 SISSSGGFFALVSPNEKVERV 99
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG,
structural genomics, joint center for structural
genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1
PDB: 1t6r_A* 1vc1_A
Length = 110
Score = 36.8 bits (86), Expect = 0.005
Identities = 16/84 (19%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 902 DVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLD 961
+ I+R+ G ++ N ++ ++ +S+ K+I+LD+ S+S +D++ + + +
Sbjct: 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNF-ISTTS-KKKIVLDLSSVSYMDSAGLGTLVV 67
Query: 962 LYKELMEQGISLHIVKLLEPVKQV 985
+ K+ G + L E + ++
Sbjct: 68 ILKDAKINGKEFILSSLKESISRI 91
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma,
sporulation, serine kinase, transcription; HET: ADP;
2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1
PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Length = 116
Score = 36.8 bits (86), Expect = 0.006
Identities = 15/81 (18%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 905 GIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYK 964
++I+R+ G ++ +++ +++ + L + + I+L++ L+ +D+S + L YK
Sbjct: 12 DVLIVRLSGELDHHTAEELREQVTDV-LENRA-IRHIVLNLGQLTFMDSSGLGVILGRYK 69
Query: 965 ELMEQGISLHIVKLLEPVKQV 985
++ G + + + VK++
Sbjct: 70 QIKNVGGQMVVCAVSPAVKRL 90
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 38.8 bits (89), Expect = 0.006
Identities = 21/163 (12%), Positives = 58/163 (35%), Gaps = 1/163 (0%)
Query: 315 DKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVR 374
++E + + K +EK+ +E E + M E + ++
Sbjct: 76 EREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAI 135
Query: 375 AQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVALRISNLMRVLGTEAVQD 434
+ K +E A + + ++ R+ + ++ + + + + ++
Sbjct: 136 EENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKM 195
Query: 435 PTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKE 477
K + + + K ++ A +L + K +++RK KE
Sbjct: 196 -AKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKE 237
Score = 31.5 bits (70), Expect = 1.5
Identities = 22/218 (10%), Positives = 66/218 (30%)
Query: 191 ISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIA 250
I S P + E+++ K + A+ + + ++ +
Sbjct: 20 ILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREV 79
Query: 251 PKMEDDQDEMPEVEWWDAVIMVEETYEKENNIKTSAITNLVEHPIQMKPPSDMAKPVYMP 310
+ +++ + + E+ ++ +A+ ++ +
Sbjct: 80 IQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENN 139
Query: 311 VFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKME 370
++ + K ++ + ++ QE L R + K +
Sbjct: 140 NWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEK 199
Query: 371 AHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKE 408
+ + K ++ A +L + K +++RK KE
Sbjct: 200 LAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKE 237
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; 2.10A {Planctomyces limnophilus}
Length = 121
Score = 36.2 bits (84), Expect = 0.010
Identities = 10/83 (12%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 905 GIVILRIIGGMNFINKDKVFHKISK-LSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLY 963
+ ++ + + +V S L+ P+++++D+ + +S ++ + +
Sbjct: 14 QVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVEFFGSSFIELLVRGW 73
Query: 964 KELME-QGISLHIVKLLEPVKQV 985
K + E Q + + +V
Sbjct: 74 KRIKEDQQGVFALCSVSPYCVEV 96
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation,
crystallography, phosphorylation, sigma factor,
sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP:
c.13.2.1 PDB: 1h4z_A 1h4y_A
Length = 117
Score = 36.1 bits (84), Expect = 0.013
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 905 GIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYK 964
V++R+ G ++ +++ KIS + II + LS +D+S V L +
Sbjct: 11 ETVVIRLFGELDHHAVEQIRAKISTAI--FQGAVTTIIWNFERLSFMDSSGVGLVLGRMR 68
Query: 965 ELMEQGISLHIVKLLEPVKQV 985
EL ++ +++V
Sbjct: 69 ELEAVAGRTILLNPSPTMRKV 89
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.022
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 18/88 (20%)
Query: 317 ERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRV-LGTEAVQDPTKMEAHVRA 375
E + +R+ W+EEQ K RL + S +M +A +D +
Sbjct: 83 EPESIRK------WREEQRK-RL------QELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 376 QMAKRQKDHEEANASRKLTVEQKREKKI 403
Q+ K + ++ A+ + Q+ + I
Sbjct: 130 QVEKNKINNRIADKAFY----QQPDADI 153
Score = 34.7 bits (79), Expect = 0.097
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 375 AQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVALRISNLMRVLGTEAVQD 434
AQ + +E + RK EQ+ K++++ + S + R +A +D
Sbjct: 75 AQADRLT---QEPESIRKWREEQR--KRLQE-LDAASKVMEQEWR---------EKAKKD 119
Query: 435 PTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKI 472
+ Q+ K + ++ A+ + Q+ + I
Sbjct: 120 LEEWNQRQSEQVEKNKINNRIADKAFY----QQPDADI 153
Score = 34.0 bits (77), Expect = 0.17
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 24/82 (29%)
Query: 160 NIRAKKREEFHEKLKEKPTEDLSESKFFDPRISAKSSVRTKRALKFHEPGKF-QQLAEQL 218
+IR K REE ++L+E D + + R K A K E ++ Q+ +EQ+
Sbjct: 86 SIR-KWREEQRKRLQEL---DAASKV-------MEQEWREK-AKKDLE--EWNQRQSEQV 131
Query: 219 -RVKAQ--------LAKLQADI 231
+ K + ADI
Sbjct: 132 EKNKINNRIADKAFYQQPDADI 153
Score = 33.2 bits (75), Expect = 0.27
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 331 KEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANAS 390
+E E IR E E + R+ + L + + + + + + E
Sbjct: 81 TQEPESIRKWRE---EQRKRL----QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 391 RKLTVEQKREKKIRKIKEDT 410
K+ + ++ D
Sbjct: 134 NKINNRIADKAFYQQPDADI 153
Score = 31.3 bits (70), Expect = 1.3
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 430 EAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKE-----DTSLEVH 484
Q+P + R + KR ++ + A+ + ++ REK + ++E +E +
Sbjct: 79 RLTQEPESIRKW-REEQRKRLQELDAASKVME---QEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 485 VAVYRVDDFSNPSKKFKVETN 505
R+ D K F + +
Sbjct: 135 KINNRIAD-----KAFYQQPD 150
Score = 30.1 bits (67), Expect = 2.9
Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 395 VEQKRE--KKIRKIKEDTSLEVHVALRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKD 452
++ + + IRK +E+ R+ + L + + + + + +
Sbjct: 77 ADRLTQEPESIRKWREEQ------RKRL----QELDAASKVMEQEWREKAKKDLEEWNQR 126
Query: 453 HEEANASRKLTVEQKREKKIRKIKEDT 479
E K+ + ++ D
Sbjct: 127 QSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 29.4 bits (65), Expect = 4.9
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 361 EAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKE 408
Q+P + R + KR ++ + A+ + ++ REK + ++E
Sbjct: 79 RLTQEPESIRKW-REEQRKRLQELDAASKVME---QEWREKAKKDLEE 122
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE
membrane protein, transport protein; HET: BNG; 2.78A
{Escherichia coli}
Length = 429
Score = 34.9 bits (81), Expect = 0.17
Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 19/136 (13%)
Query: 630 YVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSN 689
+ + + V+VL I +I ++ G LS + + + +
Sbjct: 158 TIIISITTLAVTVLG---SVLFRGFLAIIPI-----LIGVLVGYALSFAMGI---VDTTP 206
Query: 690 VGKIP-IGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAK---KKYKIDS--N 743
+ LP+ P F L + L ++V + ++ + A K D +
Sbjct: 207 IINAHWFALPTLYTPRFEWFAILTI--LPAALVVIAEHVGHLVVTANIVKKDLLRDPGLH 264
Query: 744 QELLASGVSNIFASFF 759
+ + A+G+S + + FF
Sbjct: 265 RSMFANGLSTVISGFF 280
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for
structural genomics, protein struc initiative, MCSG,
STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Length = 99
Score = 31.6 bits (72), Expect = 0.30
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 938 PKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQV 985
++++D+ D S+V++ + +G + IV + E + +
Sbjct: 44 LDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNEASETM 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.35
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 221 KAQLAKLQADISKNARKTGISSATKLALIAPKME 254
K L KLQA + A SA LA+ A ME
Sbjct: 19 KQALKKLQASLKLYAD----DSAPALAIKA-TME 47
Score = 32.6 bits (73), Expect = 0.35
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 194 KSSVRT-KRALKFHEPGKFQQLAEQLRVKAQL 224
K +++ + +LK + A L +KA +
Sbjct: 19 KQALKKLQASLKLYADDS----APALAIKATM 46
Score = 32.6 bits (73), Expect = 0.36
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 23/53 (43%)
Query: 90 EKAMKIAQLQAQIQSKLSTGVLKPSVPGAKPPGAPATDKPTPLILDSEGRTID 142
EK + +LQA LK + APA L + + T++
Sbjct: 18 EK-QALKKLQAS---------LKLYADDS----APA------LAIKA---TME 47
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix
bundle, protein binding; NMR {Sus scrofa} SCOP:
a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Length = 99
Score = 30.4 bits (68), Expect = 0.71
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 299 PPSDMAKPVYMPVFLTDK-ERKKLRRQNRREAWKEEQ-EKIRLGLEPPPEPKLRISNLM 355
P +T K +R++L+R+ E W + + E++ G E ++ I L+
Sbjct: 2 PGGSPGGLQKRHARVTVKYDRRELQRRLDVEKWIDGRLEELYRGREADMPDEVNIDELL 60
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 31.4 bits (72), Expect = 0.78
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 27/75 (36%)
Query: 377 MAKRQKDHEEANASRKLTVEQKREKKIRKIKE-----D-------TSLEVHVALRISNLM 424
M+K + + + +L EQK+E I E D E+ VA M
Sbjct: 1 MSKNRSSLQSGPLNSELLEEQKQE-----IYEAFSLFDMNNDGFLDYHELKVA------M 49
Query: 425 RVLGTEAVQDPTKME 439
+ LG + K E
Sbjct: 50 KALG----FELPKRE 60
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei;
transcription, gene regulation; 1.90A {Moorella
thermoacetica} PDB: 2vy9_A 3ztb_A*
Length = 123
Score = 30.8 bits (70), Expect = 0.85
Identities = 11/80 (13%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 901 IDVPGIVILRIIGGMNF----INKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTV 956
+ V ++ I ++ K+++ H I+ ++ K +++D+ +L VD
Sbjct: 8 LKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAG------KGLVIDISALEVVDEFVT 61
Query: 957 KSFLDLYKELMEQGISLHIV 976
+ +++ + G+ +
Sbjct: 62 RVLIEISRLAELLGLPFVLT 81
>2l26_A Uncharacterized protein RV0899/MT0922; out membrane protein,
membrane protein; NMR {Mycobacterium tuberculosis}
Length = 284
Score = 31.5 bits (71), Expect = 1.4
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 43 LKGTAPVAPTPVVPAGVTPAIIGSAKIPP-----LMPPAPPSTTAE-KDNATYEKAMKIA 96
++ + PT V+P + G++ + + + D A KA +
Sbjct: 1 MRPQSVTGPTGVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAA--KAALMT 58
Query: 97 QLQAQIQSKLSTGVLKPSVPGAKPPGAPATDKPTPLILDSEGRTIDITGKQVQLTHVVPT 156
L + ++ P + + + + + + V LT P+
Sbjct: 59 ALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPS 118
Query: 157 LKA 159
+
Sbjct: 119 SEH 121
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 2.3
Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 41/196 (20%)
Query: 316 KERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRIS---------------NLMRVLGT 360
+ R R A Q+ R+ + +R + +L
Sbjct: 805 QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864
Query: 361 EAVQDPTKMEAHVRAQMAKRQKDHEEANA---------------SRKLTVEQKREKKIRK 405
++ HVR +A+ +KL +E + ++ +K
Sbjct: 865 HKS---IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921
Query: 406 IKEDTSLEVHVA---LRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKL 462
+ LE + +I + ++ +E + K + D E S +
Sbjct: 922 LHIG--LENKIMQLQRKIDEQNKEY-KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Query: 463 TVEQKREKKIRKIKED 478
+ ++ ++E+
Sbjct: 979 --AKNATNRVLSLQEE 992
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 30.5 bits (68), Expect = 2.4
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 37 KKALLALKGTAPVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPSTTAEKDNATYEKAMKIA 96
+ + P++ T V PA + P + P P + K +
Sbjct: 23 HQVIELPAPAQPISVTMVTPADLEPP----QAVQPPPEPVVEPEPEPEPIPEPPKEAPVV 78
Query: 97 QLQAQIQSKLSTGVLKPSVPGAKPPGAPATDKPTP 131
+ + + K +K K P +P
Sbjct: 79 IEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 113
Score = 30.5 bits (68), Expect = 3.0
Identities = 13/93 (13%), Positives = 20/93 (21%)
Query: 39 ALLALKGTAPVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPSTTAEKDNATYEKAMKIAQL 98
L+ V +PA P + L PP E + I +
Sbjct: 12 GLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEP 71
Query: 99 QAQIQSKLSTGVLKPSVPGAKPPGAPATDKPTP 131
+ + KP K
Sbjct: 72 PKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 104
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton
TR pathway, revertant, integral membrane protein,
photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A
{Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB:
1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H*
1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H*
1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Length = 260
Score = 30.6 bits (69), Expect = 2.4
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 321 LRRQNRREAW--KEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQ 376
L+ +N RE + + E P P PK + L GT V P + +
Sbjct: 31 LQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALA 88
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion
system, coiled-coil, VIRU cell invasion; 2.05A {Shigella
flexneri} PDB: 3gz1_P
Length = 201
Score = 30.2 bits (66), Expect = 3.3
Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 12/191 (6%)
Query: 301 SDMAKPVYMPVFLTDKERKKLRRQNRREAWK--EEQEKIRLGLEPPPEPKLRISNLMRVL 358
+D A ++ + + N + K L + L I NL+++L
Sbjct: 6 NDAANKLFSLTIADLTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQIL 65
Query: 359 GTEAV------QDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSL 412
G +++ K + R Q D S + + EK+I K+K S
Sbjct: 66 GEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSK 125
Query: 413 EVHVALRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKI 472
+ +I+ + L + P K + +KD A + T+ +++ I
Sbjct: 126 IKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTIKKD----AAVKDRTLIEQKTLSI 181
Query: 473 RKIKEDTSLEV 483
D S+++
Sbjct: 182 HSKLTDKSMQL 192
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 29.6 bits (67), Expect = 6.1
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 19/107 (17%)
Query: 874 GQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLS 933
G+ M +K+ L DS + E + + + +L G+ + + L+
Sbjct: 31 GRGSMTFKI--LTDSTADLPESWTQE----NDVQVL----GLTVQLDGITYETVGPDRLT 80
Query: 934 SEPYPKQIILDMMSLSSVDTS--TVKSFLDLYKELMEQG---ISLHI 975
S ++ + + S TS V F +++ E G + +
Sbjct: 81 SRVLLEK----IAAGSKPTTSQVNVGQFESYFRQSAENGQEVLYIAF 123
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.5 bits (65), Expect = 7.2
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 44 KGTAPVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPSTTAEKDNATYEKA----MKIAQLQ 99
APTP TPA + + P + D L
Sbjct: 12 SMQIDNAPTPHN----TPASVLNPSYLKNGNPVRAQAQEQDDKIGTINEEDILANQPLLL 67
Query: 100 AQIQSKLSTGVLKPS 114
IQ +L + V + S
Sbjct: 68 QSIQDRLGSLVGQDS 82
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex,
covalently bound inhibitor, isomer; HET: ZDP; 1.35A
{Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB:
1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Length = 274
Score = 29.0 bits (66), Expect = 9.0
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 762 IPFASSLSRSLVQLQVGGKTQLASGVS-----CVLLV-----LILLYIGPFFETLPY 808
IPF ++ L+ +T L VS CV+ V + +GP E+
Sbjct: 128 IPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHER 184
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase,
tRNA processing, hydrolase,translation; 1.60A
{Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Length = 375
Score = 28.9 bits (65), Expect = 9.8
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 313 LTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPK---LRISNLMRV 357
+T K + A +E +++ + P+ I+N ++
Sbjct: 162 ITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQL 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,791,729
Number of extensions: 1047811
Number of successful extensions: 2358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2313
Number of HSP's successfully gapped: 60
Length of query: 1124
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1020
Effective length of database: 3,798,009
Effective search space: 3873969180
Effective search space used: 3873969180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.8 bits)