RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16876
(1124 letters)
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 115
Score = 48.3 bits (115), Expect = 2e-07
Identities = 14/81 (17%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 905 GIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYK 964
++I+R+ G ++ +++ ++ + + I+L++ L+ +D+S + L YK
Sbjct: 11 DVLIVRLSGELDHHTAEELREQV--TDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYK 68
Query: 965 ELMEQGISLHIVKLLEPVKQV 985
++ G + + + VK++
Sbjct: 69 QIKNVGGQMVVCAVSPAVKRL 89
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa
{Thermotoga maritima [TaxId: 2336]}
Length = 110
Score = 47.6 bits (113), Expect = 3e-07
Identities = 16/85 (18%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 901 IDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFL 960
++ I+R+ G ++ N ++ ++ + S K+I+LD+ S+S +D++ + + +
Sbjct: 9 VEQDDKAIVRVQGDIDAYNSSELKEQL--RNFISTTSKKKIVLDLSSVSYMDSAGLGTLV 66
Query: 961 DLYKELMEQGISLHIVKLLEPVKQV 985
+ K+ G + L E + ++
Sbjct: 67 VILKDAKINGKEFILSSLKESISRI 91
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 34.1 bits (78), Expect = 0.064
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 22/177 (12%)
Query: 414 VHVALR---------ISNLMRVLGTEAVQDPTKMEAHVRAQMAKR--QKDHEEANASRKL 462
V VA+R NL+ V+ + A A R + E + +
Sbjct: 39 VTVAVRRTNIGQNPDEPNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLV 98
Query: 463 TVEQKREKKIRKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCN 522
+E ++K + + A V D F V + + + C
Sbjct: 99 KLEVLADQKTLFP--NVVETLKAAEQLVKD------GFDVMVYTSDDPIIARQLAEIGCI 150
Query: 523 VIVVEGGPKQQSK---FKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLM 576
++ G + ++ + + + G T + + ELG +VLM
Sbjct: 151 AVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLM 207
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 30.2 bits (68), Expect = 0.52
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 374 RAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVALRISNLMRVLGTEAVQ 433
R + + EA R+ E + K + + +E +++ E
Sbjct: 40 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE----------HEREVIQKAIEENNN 89
Query: 434 DPTKMEAHVRAQMAKRQKDHEEANAS--RKLTVEQKREKKIRKIKE 477
+ + +M +++ E A+ +L + K +++RK KE
Sbjct: 90 FIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKE 135
Score = 30.2 bits (68), Expect = 0.60
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 298 KPPSDMAKPVYMPVFLTDKER------KKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRI 351
KPPS P + ++ KKL R ++E + L E +
Sbjct: 22 KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA-----EKREHE 76
Query: 352 SNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANAS--RKLTVEQKREKKIRKIKE 408
+++ E + + +M +++ E A+ +L + K +++RK KE
Sbjct: 77 REVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKE 135
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 29.7 bits (66), Expect = 1.9
Identities = 19/172 (11%), Positives = 56/172 (32%), Gaps = 17/172 (9%)
Query: 313 LTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAH 372
+K+R +QN+ + +++ P L + P
Sbjct: 104 QLEKKRDDFCKQNQEASSDRCSGLLQVIFSP----------LEEEVKAGIYSKPGGYRLF 153
Query: 373 VRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLE-------VHVALRISNLMR 425
V+ ++K +EE + + K ++ D L+ + + +
Sbjct: 154 VQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKA 213
Query: 426 VLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKE 477
+ + +M+ M ++++ ++E +E R + +++ +
Sbjct: 214 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER 265
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 29.5 bits (65), Expect = 2.4
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 8/140 (5%)
Query: 938 PKQIILDMMSLSSVDTSTVKSFLDLYKE---LMEQGISLHIVKLLEPVKQVNSHPLLNQD 994
K + +L+ + K FL K L IS+ + + +K++ +HP L +
Sbjct: 11 VKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 70
Query: 995 DKDVGPKIFNKYKPFKQNEFDEIYHHTEYKKK-----HLSESLKNKLRSKFKIVNIVLSL 1049
G + F+ + + K ++ + K +V+
Sbjct: 71 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQT 130
Query: 1050 FPILEWLPNYNWKNDLSHDM 1069
+ E L + D
Sbjct: 131 LDLFEKLCRNRRYLYVRLDG 150
Score = 28.4 bits (62), Expect = 5.8
Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 11/186 (5%)
Query: 366 PTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVALR-ISNLM 424
P K+E V + QK+ + + VE + KI +SL +L+ + N
Sbjct: 10 PVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISV----SSLSSITSLKKLCNHP 65
Query: 425 RVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVH 484
++ + + + + E S K+ + + + TS +V
Sbjct: 66 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKM---LVLDYILAMTRTTTSDKVV 122
Query: 485 VAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRI 544
+ K + M +VE S M+
Sbjct: 123 LVSNYTQTLDLFEKLCRNRRYLYVRLDG---TMSIKKRAKIVERFNNPSSPEFIFMLSSK 179
Query: 545 KWEEDM 550
+
Sbjct: 180 AGGCGL 185
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 27.5 bits (61), Expect = 9.7
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 497 SKKFKVETNCNQLFMTGAVVMYKDCNVIVVEG---GPKQQSKFKRLMMHRIKWEEDMIKS 553
+ F V + + + + I+ G Q + I+ + +
Sbjct: 123 EEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIV 182
Query: 554 NEGKETPNKCVLVWELGSLSVLM 576
+ G +P ELG+ VL+
Sbjct: 183 DAGIGSPKDAAYAMELGADGVLL 205
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,037,789
Number of extensions: 192991
Number of successful extensions: 502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 11
Length of query: 1124
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1029
Effective length of database: 1,103,246
Effective search space: 1135240134
Effective search space used: 1135240134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)