BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16878
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTP 144
Y CLQ+++D+ G L C+ T AL+ SY +Q+E GDY E + Y+S +K PNQT
Sbjct: 111 YYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELH-GVDYVSDFKLAPNQTK 169
Query: 145 ELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGIL 204
ELE ++ME HK + +PA ADL LE A++ +YGV LH AKD + + + L V G+L
Sbjct: 170 ELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLL 229
Query: 205 VFQNQTKIN 213
V++++ +IN
Sbjct: 230 VYKDKLRIN 238
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKH 48
+ SY +Q+E GDY E + Y+S +K PNQT ELE ++ME HK +
Sbjct: 136 LGSYTIQSELGDYDPELH-GVDYVSDFKLAPNQTKELEEKVMELHKSY 182
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTP 144
Y CLQ+++D+ G L C+ T AL+ SY +Q+E GDY E + Y+S +K PNQT
Sbjct: 94 YYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELH-GVDYVSDFKLAPNQTK 152
Query: 145 ELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGIL 204
ELE ++ME HK + +PA ADL LE A++ +YGV LH AKD + + + L V G+L
Sbjct: 153 ELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLL 212
Query: 205 VFQNQTKIN 213
V++++ +IN
Sbjct: 213 VYKDKLRIN 221
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKH 48
+ SY +Q+E GDY E + Y+S +K PNQT ELE ++ME HK +
Sbjct: 119 LGSYTIQSELGDYDPELH-GVDYVSDFKLAPNQTKELEEKVMELHKSY 165
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTP 144
Y CLQ++ D+ G L C+ T AL+ SY VQ+E GDY D Y+S ++F PN T
Sbjct: 96 YYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDY-DPDECGSDYISEFRFAPNHTK 154
Query: 145 ELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGIL 204
ELE +++E HK H G +PA A+++ LE A++ +YGV LH AKD + + + L V G+L
Sbjct: 155 ELEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLL 214
Query: 205 VFQNQTKIN 213
+++++ +IN
Sbjct: 215 IYRDRLRIN 223
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKH 48
+ SY VQ+E GDY D Y+S ++F PN T ELE +++E HK H
Sbjct: 121 LGSYTVQSELGDY-DPDECGSDYISEFRFAPNHTKELEDKVIELHKSH 167
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTP 144
Y CLQ++ D+ G L C+ T AL+ SY VQ+E GDY D Y+S ++F PN T
Sbjct: 96 YYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDY-DPDECGSDYISEFRFAPNHTK 154
Query: 145 ELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGIL 204
ELE +++E HK H G +PA A+++ LE A++ +YGV LH AKD + + + L V G+L
Sbjct: 155 ELEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLL 214
Query: 205 VFQNQTKIN 213
+++++ +IN
Sbjct: 215 IYRDRLRIN 223
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKH 48
+ SY VQ+E GDY D Y+S ++F PN T ELE +++E HK H
Sbjct: 121 LGSYTVQSELGDY-DPDECGSDYISEFRFAPNHTKELEDKVIELHKSH 167
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain
Length = 109
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTP 144
Y CLQ+++D+ G L C+ T AL+ SY +Q+E GDY E + Y+S +K PNQT
Sbjct: 16 YYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELH-GVDYVSDFKLAPNQTK 74
Query: 145 ELERRIMENHKKHAGQSPAAADLNLLETARRCEL 178
ELE ++ME HK + +PA ADL LE A++ +
Sbjct: 75 ELEEKVMELHKSYRSMTPAQADLEFLENAKKLSM 108
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKH 48
+ SY +Q+E GDY E + Y+S +K PNQT ELE ++ME HK +
Sbjct: 41 LGSYTIQSELGDYDPELH-GVDYVSDFKLAPNQTKELEEKVMELHKSY 87
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT-- 143
LF LQ+K + ++C TA L+ SY VQA+ GDY E + YLSS + +P +
Sbjct: 100 LFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEVH-KSGYLSSERLIPQRVMD 158
Query: 144 ------PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
+ E RI H +H G A L L+ A+ E+YG+ K+ L L
Sbjct: 159 QHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEYLKIAQDLEMYGINYFEIKNKKGTDLWLG 218
Query: 198 VAHMGILVFQNQTKI 212
V +G+ +++ K+
Sbjct: 219 VDALGLNIYEKDDKL 233
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ SY VQA+ GDY E + YLSS + +P +R+M+ HK
Sbjct: 124 LGSYAVQAKFGDYNKEVH-KSGYLSSERLIP-------QRVMDQHK 161
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQA+ GDY E + YL++ + +P + E
Sbjct: 101 LFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIH-KPGYLANDRLLPQRVLE 159
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G + + L+ A+ E+YGV K+ L L
Sbjct: 160 QHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLG 219
Query: 198 VAHMGILVFQNQTKI 212
V +G+ ++++ K+
Sbjct: 220 VDALGLNIYEHDDKL 234
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQA+ GDY E + YL++ + +P +R++E HK
Sbjct: 125 LASYAVQAKYGDYNKEIH-KPGYLANDRLLP-------QRVLEQHK 162
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQA+ GDY E + YL++ + +P + E
Sbjct: 103 LFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIH-KPGYLANDRLLPQRVLE 161
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G + + L+ A+ E+YGV K+ L L
Sbjct: 162 QHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLG 221
Query: 198 VAHMGILVFQNQTKI 212
V +G+ ++++ K+
Sbjct: 222 VDALGLNIYEHDDKL 236
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQA+ GDY E + YL++ + +P +R++E HK
Sbjct: 127 LASYAVQAKYGDYNKEIH-KPGYLANDRLLP-------QRVLEQHK 164
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQA+ GDY E + YL++ + +P + E
Sbjct: 103 LFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIH-KPGYLANDRLLPQRVLE 161
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G + + L+ A+ E+YGV K+ L L
Sbjct: 162 QHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLG 221
Query: 198 VAHMGILVFQNQTKI 212
V +G+ ++++ K+
Sbjct: 222 VDALGLNIYEHDDKL 236
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQA+ GDY E + YL++ + +P +R++E HK
Sbjct: 127 LASYAVQAKYGDYNKEIH-KPGYLANDRLLP-------QRVLEQHK 164
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQA+ GDY E + YL++ + +P + E
Sbjct: 103 LFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIH-KPGYLANDRLLPQRVLE 161
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G + + L+ A+ E+YGV K+ L L
Sbjct: 162 QHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLG 221
Query: 198 VAHMGILVFQNQTKI 212
V +G+ ++++ K+
Sbjct: 222 VDALGLNIYEHDDKL 236
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQA+ GDY E + YL++ + +P +R++E HK
Sbjct: 127 LASYAVQAKYGDYNKEIH-KPGYLANDRLLP-------QRVLEQHK 164
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQA+ GDY E + YL++ + +P + E
Sbjct: 101 LFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIH-KPGYLANDRLLPQRVLE 159
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G + + L+ A+ E+YGV K+ L L
Sbjct: 160 QHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLG 219
Query: 198 VAHMGILVFQNQTKI 212
V +G+ ++++ K+
Sbjct: 220 VDALGLNIYEHDDKL 234
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQA+ GDY E + YL++ + +P +R++E HK
Sbjct: 125 LASYAVQAKYGDYNKEIH-KPGYLANDRLLP-------QRVLEQHK 162
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQA+ GDY E + YL++ + +P + E
Sbjct: 101 LFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIH-KPGYLANDRLLPQRVLE 159
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G + + L+ A+ E+YGV K+ L L
Sbjct: 160 QHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLG 219
Query: 198 VAHMGILVFQNQTKI 212
V +G+ ++++ K+
Sbjct: 220 VDALGLNIYEHDDKL 234
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQA+ GDY E + YL++ + +P +R++E HK
Sbjct: 125 LASYAVQAKYGDYNKEIH-KPGYLANDRLLP-------QRVLEQHK 162
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQ++ GD+ E + YL+ K +P + E
Sbjct: 101 LFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH-KSGYLAGDKLLPQRVLE 159
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G A L L+ A+ E+YGV K+ L L
Sbjct: 160 QHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLG 219
Query: 198 VAHMGILVFQNQTKI 212
V +G+ +++ ++
Sbjct: 220 VDALGLNIYEQNDRL 234
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQ++ GD+ E + YL+ K +P +R++E HK
Sbjct: 125 LASYAVQSKYGDFNKEVH-KSGYLAGDKLLP-------QRVLEQHK 162
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQ++ GD+ E + YL+ K +P + E
Sbjct: 101 LFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH-KSGYLAGDKLLPQRVLE 159
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G A L L+ A+ E+YGV K+ L L
Sbjct: 160 QHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLG 219
Query: 198 VAHMGILVFQNQTKI 212
V +G+ +++ ++
Sbjct: 220 VDALGLNIYEQNDRL 234
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQ++ GD+ E + YL+ K +P +R++E HK
Sbjct: 125 LASYAVQSKYGDFNKEVH-KSGYLAGDKLLP-------QRVLEQHK 162
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ-- 142
+LF LQ+K+ + ++C + L+ASY VQA+ GDY +L+ + +P +
Sbjct: 104 HLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDY-DPSVHKRGFLAQEELLPKRVI 162
Query: 143 -----TPEL-ERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNL 196
TPE+ E RI + +H G++ A++ L+ A+ E+YGV ++ L L
Sbjct: 163 NLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLL 222
Query: 197 SVAHMGILVFQNQTKIN 213
V +G+ ++ + ++
Sbjct: 223 GVDALGLHIYDPENRLT 239
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ-- 142
+LF LQ+K+ + ++C + L+ASY VQA+ GDY +L+ + +P +
Sbjct: 117 HLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDY-DPSVHKRGFLAQEELLPKRVI 175
Query: 143 -----TPEL-ERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNL 196
TPE+ E RI + +H G++ A++ L+ A+ E+YGV ++ L L
Sbjct: 176 NLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLL 235
Query: 197 SVAHMGILVFQNQTKIN 213
V +G+ ++ + ++
Sbjct: 236 GVDALGLHIYDPENRLT 252
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ-- 142
+LF LQ+K+ + ++C + L+ASY VQA+ GDY +L+ + +P +
Sbjct: 117 HLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDY-DPSVHKRGFLAQEELLPKRVI 175
Query: 143 -----TPEL-ERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNL 196
TPE+ E RI + +H G++ A++ L+ A+ E+YGV ++ L L
Sbjct: 176 NLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLL 235
Query: 197 SVAHMGILVFQNQTKIN 213
V +G+ ++ + ++
Sbjct: 236 GVDALGLHIYDPENRLT 252
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
LF LQ+K + ++C TA L+ASY VQ++ GD+ E + YL+ K +P + E
Sbjct: 98 LFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH-KSGYLAGDKLLPQRVLE 156
Query: 146 --------LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E RI H++H G A L L+ A+ E YGV K+ L L
Sbjct: 157 QHKLNKDQWEERIQVWHEEHRGXLREDAVLEYLKIAQDLEXYGVNYFSIKNKKGSELWLG 216
Query: 198 VAHMGILVFQNQTKI 212
V +G+ +++ ++
Sbjct: 217 VDALGLNIYEQNDRL 231
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHK 46
+ASY VQ++ GD+ E + YL+ K +P +R++E HK
Sbjct: 122 LASYAVQSKYGDFNKEVH-KSGYLAGDKLLP-------QRVLEQHK 159
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 85 YLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ-- 142
+LF LQ+K+ + ++C + L+ASY VQA+ GDY +L+ + +P +
Sbjct: 99 HLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDY-DPSVHKRGFLAQEELLPKRVI 157
Query: 143 -----TPEL-ERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNL 196
TPE+ E RI + +H G++ A++ L+ A+ E+YGV ++ L L
Sbjct: 158 NLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNKKGTELLL 217
Query: 197 SVAHMGILVFQNQTKIN 213
V +G+ ++ + ++
Sbjct: 218 GVDALGLHIYDPENRLT 234
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT-- 143
LF LQ+K + ++C T+ L+ASY VQA GD+ + +L++ + +P +
Sbjct: 101 LFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHG-PGFLANDRLLPQRVTD 159
Query: 144 ------PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLS 197
E E+ I ++H G A + L+ A+ E+YGV ++ N L L
Sbjct: 160 QHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLG 219
Query: 198 VAHMGILVFQNQTKI 212
V +G+ +++ K+
Sbjct: 220 VDALGLNIYEKDDKL 234
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--T 143
L +Q + D+ G + + A A + Q + G + +E +L F+P +
Sbjct: 6 LLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPH-NEQKHKAGFLDLKDFLPKEYVK 64
Query: 144 PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD 188
+ ER+I + HK S A + ++ AR + YGV K+
Sbjct: 65 QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKE 109
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--T 143
L +Q + D+ G + + A A Y Q + G + +E +L F+P +
Sbjct: 6 LLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPH-NEQKHKPGFLELKDFLPKEYIK 64
Query: 144 PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD 188
+ ER+I HK S A + ++ AR + YGV K+
Sbjct: 65 QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKE 109
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--T 143
L +Q + D+ G + + A A Y Q + G + +E +L F+P +
Sbjct: 20 LLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPH-NEQKHKPGFLELKDFLPKEYIK 78
Query: 144 PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD 188
+ ER+I HK S A + ++ AR + YGV K+
Sbjct: 79 QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKE 123
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--T 143
L +Q + D+ G + + A A Y Q + G + +E +L F+P +
Sbjct: 15 LLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPH-NEQKHKPGFLELKDFLPKEYIK 73
Query: 144 PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD 188
+ ER+I HK S A + ++ AR + YGV K+
Sbjct: 74 QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKE 118
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--T 143
L +Q + D+ G + + A A + Q + G + +E +L F+P +
Sbjct: 31 LLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPH-NEQKHKAGFLDLKDFLPKEYVK 89
Query: 144 PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD 188
+ ER+I + HK S A + ++ AR + YGV K+
Sbjct: 90 QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKE 134
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--T 143
L +Q + D+ G + + A A + Q + G + +E +L F+P +
Sbjct: 185 LLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPH-NEQKHKAGFLDLKDFLPKEYVK 243
Query: 144 PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD 188
+ ER+I + HK S A + ++ AR + YGV K+
Sbjct: 244 QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKE 288
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 86 LFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE 145
L +Q + D+ G + A + Q + G +V + +L +F+P + +
Sbjct: 31 LLYVQARDDILNGSHPVSFEKACEFGGFQAQIQFGPHVEHKH-KPGFLDLKEFLPKEYIK 89
Query: 146 ---LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD 188
E+RI + HK S A + ++ AR YGV K+
Sbjct: 90 QRGAEKRIFQEHKNCGEMSEIEAKVKYVKLARSLRTYGVSFFLVKE 135
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac
Protein
Length = 68
Score = 27.3 bits (59), Expect = 5.6, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 21 HTYLSSYKFVPNQTPELERR 40
+TY++ YKFVP + +LE R
Sbjct: 8 NTYVALYKFVPQENEDLEMR 27
Score = 27.3 bits (59), Expect = 5.6, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 130 HTYLSSYKFVPNQTPELERR 149
+TY++ YKFVP + +LE R
Sbjct: 8 NTYVALYKFVPQENEDLEMR 27
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 22/67 (32%)
Query: 124 SEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKL 183
S+ Y H YLS Y+ + MEN D+ +LE +R +L G+K
Sbjct: 69 SDPYVSHVYLSFYR----------QETMEN------------DIAILELSRPLKLDGLKS 106
Query: 184 HPAKDHD 190
PAK D
Sbjct: 107 KPAKLPD 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,127,904
Number of Sequences: 62578
Number of extensions: 228706
Number of successful extensions: 611
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 52
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)