Query psy16878
Match_columns 213
No_of_seqs 192 out of 1119
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:24:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3530|consensus 100.0 6E-45 1.3E-49 325.7 12.9 168 45-213 61-232 (616)
2 KOG3527|consensus 100.0 4.5E-34 9.8E-39 264.1 7.9 164 33-213 85-252 (975)
3 KOG0792|consensus 100.0 5.9E-30 1.3E-34 241.0 13.8 160 34-209 78-248 (1144)
4 KOG3529|consensus 99.9 8E-28 1.7E-32 221.3 10.6 190 5-212 41-243 (596)
5 PF00373 FERM_M: FERM central 99.9 2E-25 4.2E-30 168.3 11.1 103 82-184 9-126 (126)
6 smart00295 B41 Band 4.1 homolo 99.9 1.1E-22 2.3E-27 165.3 11.2 120 65-184 75-207 (207)
7 KOG3531|consensus 99.8 2E-20 4.3E-25 173.3 0.5 146 65-213 110-259 (1036)
8 KOG4261|consensus 99.7 2.2E-18 4.9E-23 158.7 0.4 172 38-211 154-343 (1003)
9 KOG3531|consensus 99.5 3.8E-15 8.2E-20 138.6 3.0 196 1-205 159-392 (1036)
10 KOG0248|consensus 99.4 2.4E-13 5.2E-18 124.6 4.9 142 67-210 675-833 (936)
11 KOG3527|consensus 99.3 1.3E-13 2.9E-18 129.0 -0.7 93 1-94 150-276 (975)
12 KOG4371|consensus 99.3 1E-12 2.2E-17 124.9 4.9 147 62-209 584-754 (1332)
13 KOG3530|consensus 99.3 1.7E-12 3.6E-17 117.7 3.1 48 1-49 130-177 (616)
14 cd00836 FERM_C FERM_C domain. 98.7 1.9E-08 4.2E-13 72.0 3.8 36 178-213 1-36 (92)
15 KOG3552|consensus 98.7 6E-08 1.3E-12 92.2 7.6 140 65-205 260-429 (1298)
16 KOG0792|consensus 98.3 3.5E-07 7.5E-12 88.3 2.3 98 1-98 144-281 (1144)
17 KOG4371|consensus 98.1 2.7E-06 5.8E-11 82.1 4.5 66 59-125 108-181 (1332)
18 cd00435 ACBP Acyl CoA binding 98.0 4E-05 8.6E-10 54.1 8.0 80 88-180 5-85 (85)
19 KOG4257|consensus 97.8 7E-05 1.5E-09 69.9 7.1 142 65-206 91-255 (974)
20 PF00887 ACBP: Acyl CoA bindin 97.7 0.00012 2.5E-09 51.8 6.5 64 100-176 19-82 (87)
21 KOG3727|consensus 97.5 0.00018 3.9E-09 65.9 5.7 116 89-205 451-579 (664)
22 PTZ00458 acyl CoA binding prot 97.1 0.0037 8E-08 44.6 7.8 66 101-179 20-86 (90)
23 COG4281 ACB Acyl-CoA-binding p 97.0 0.0023 5E-08 43.7 5.8 78 87-177 5-82 (87)
24 PF00373 FERM_M: FERM central 96.5 0.0036 7.7E-08 46.4 4.0 49 1-49 37-100 (126)
25 KOG3529|consensus 95.8 0.0073 1.6E-07 56.9 3.1 48 1-49 134-189 (596)
26 KOG0817|consensus 95.3 0.095 2.1E-06 40.5 7.2 70 102-184 23-93 (142)
27 KOG4335|consensus 95.0 0.0072 1.6E-07 55.0 0.3 128 82-211 348-497 (558)
28 smart00295 B41 Band 4.1 homolo 94.5 0.033 7E-07 44.7 2.8 49 1-49 125-181 (207)
29 KOG3878|consensus 92.3 0.3 6.4E-06 42.7 5.3 69 97-175 48-116 (469)
30 PF09379 FERM_N: FERM N-termin 86.2 0.6 1.3E-05 31.7 2.2 14 63-76 67-80 (80)
31 KOG4335|consensus 77.2 2 4.3E-05 39.6 2.7 127 82-211 221-392 (558)
32 KOG3784|consensus 75.2 4.3 9.3E-05 36.4 4.1 53 151-203 232-288 (407)
33 cd01215 Dab Disabled (Dab) Pho 45.4 23 0.0005 27.2 2.8 23 189-211 50-72 (139)
34 KOG3727|consensus 41.9 16 0.00034 34.4 1.7 38 82-119 278-315 (664)
35 cd01274 AIDA-1b AIDA-1b Phosph 36.3 44 0.00096 25.1 3.1 23 189-211 38-60 (127)
36 PF00640 PID: Phosphotyrosine 31.0 52 0.0011 24.2 2.8 23 188-210 48-70 (140)
37 cd01273 CED-6 CED-6 Phosphotyr 28.8 70 0.0015 24.4 3.2 23 189-211 52-74 (142)
38 cd01267 CED6_AIDA1b Phosphotyr 28.7 70 0.0015 23.8 3.2 23 189-211 42-64 (132)
39 smart00462 PTB Phosphotyrosine 24.4 96 0.0021 22.6 3.2 24 188-211 40-63 (134)
40 cd00934 PTB Phosphotyrosine-bi 24.2 97 0.0021 22.1 3.2 23 189-211 39-61 (123)
41 PF04202 Mfp-3: Foot protein 3 23.8 21 0.00046 23.8 -0.4 14 1-14 15-28 (71)
42 cd01268 Numb Numb Phosphotyros 22.4 1E+02 0.0023 23.6 3.1 22 190-211 48-69 (138)
43 cd01212 JIP JNK-interacting pr 21.9 1.1E+02 0.0024 23.7 3.1 23 189-211 42-64 (148)
44 PF10480 ICAP-1_inte_bdg: Beta 21.6 1.6E+02 0.0034 24.0 4.0 41 165-211 87-127 (200)
No 1
>KOG3530|consensus
Probab=100.00 E-value=6e-45 Score=325.70 Aligned_cols=168 Identities=44% Similarity=0.658 Sum_probs=156.8
Q ss_pred hhhhhcccccCCCccccccceeEEeEEeccCC-CCCch---hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhC
Q psy16878 45 HKKHALHCTCNENTAASDGLLLTLGYKVKHRP-RPPKI---PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECG 120 (213)
Q Consensus 45 hk~~~~~~~~~~~~~~~~g~~~~l~frvkf~p-~~~~l---~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~G 120 (213)
+..||++..+.+.|+++.|+|++|+||||||| +|..| .||++||+|+|+||++|||+|+.++|++||||++|+|+|
T Consensus 61 ~~~hWLD~tK~I~kqvK~gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELG 140 (616)
T KOG3530|consen 61 KVRHWLDPTKSIKKQVKIGPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELG 140 (616)
T ss_pred hcceecCcchhHHHHhccCCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhc
Confidence 34455555555566777899999999999988 68877 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccccccCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeeccCCCCCeEEEEEeC
Q psy16878 121 DYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAH 200 (213)
Q Consensus 121 d~~~~~~~~~~~l~~~~~~P~~~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd~~~~~~~lgv~~ 200 (213)
||++++| +++|+++++|+|.+++++|.+|.+.||+++|++|++||++||+.|+.|++|||+.|+|++++|.+..||+++
T Consensus 141 DYn~~~H-t~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTp 219 (616)
T KOG3530|consen 141 DYNEEEH-TGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTP 219 (616)
T ss_pred CCChhhc-cccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccC
Confidence 9999999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEcCCcccC
Q psy16878 201 MGILVFQNQTKIN 213 (213)
Q Consensus 201 ~Gi~v~~~~~k~~ 213 (213)
.||.||++.+||.
T Consensus 220 tGIlvf~g~~kig 232 (616)
T KOG3530|consen 220 TGILVFEGKKKIG 232 (616)
T ss_pred ceEEEEECCceee
Confidence 9999999999873
No 2
>KOG3527|consensus
Probab=100.00 E-value=4.5e-34 Score=264.06 Aligned_cols=164 Identities=39% Similarity=0.712 Sum_probs=152.2
Q ss_pred CcHHHHHHHHHHhhhhhcccccCCCccccccceeEEeEEecc-CCCCCch---hHHHHHHHHHHhhcccceeecCHHHHH
Q psy16878 33 QTPELERRIMENHKKHALHCTCNENTAASDGLLLTLGYKVKH-RPRPPKI---PHRYLFCLQIKRDLSQGLLHCNENTAA 108 (213)
Q Consensus 33 q~~~le~ki~~~hk~~~~~~~~~~~~~~~~g~~~~l~frvkf-~p~~~~l---~~r~l~~lQ~~~di~~g~l~~~~~~a~ 108 (213)
.|.+..+.|.++.+. .+|.|.|.||| +|+|..| ++|++++||+|.||++||+||+.-+-.
T Consensus 85 ~wlD~~k~i~k~vr~----------------~~w~f~f~vKfyPp~Psql~EditrY~lcLq~R~Dil~GrlPcsfvt~a 148 (975)
T KOG3527|consen 85 NWLDPAKEIKKQVRS----------------FPWNFTFNVKFYPPDPSQLTEDITRYYLCLQLRQDILSGRLPCSFVTHA 148 (975)
T ss_pred cccccchhhhccccc----------------CccceeEeeeeCCCChHhccccchhheehhhhhhhhhcCccccchhhhh
Confidence 355555665555553 36899999999 5589887 999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCcccccccccCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeeccC
Q psy16878 109 LMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD 188 (213)
Q Consensus 109 ~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd 188 (213)
.|++|.+|+|+|||+++.|+ .+|++.+++-|.+...++++|+++|+.++||+|++|+++||..|.+|.+|||.+|++||
T Consensus 149 llgsy~vq~E~gdYd~ee~~-~~y~~df~~aPnqt~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKd 227 (975)
T KOG3527|consen 149 LLGSYTVQSELGDYDPEEHG-SDYLSDFKFAPNQTKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKD 227 (975)
T ss_pred hhhhHhHHhHhccCCHHHcc-cchhhhhccCcchhhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccc
Confidence 99999999999999999996 59999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCccEEEcCCcccC
Q psy16878 189 HDNILLNLSVAHMGILVFQNQTKIN 213 (213)
Q Consensus 189 ~~~~~~~lgv~~~Gi~v~~~~~k~~ 213 (213)
++|+.|+||||++|+.||+++.|||
T Consensus 228 segvdi~lgvca~glliy~d~lrin 252 (975)
T KOG3527|consen 228 SEGVDIMLGVCASGLLIYRDRLRIN 252 (975)
T ss_pred cccceeeecccccceEEeechhhhc
Confidence 9999999999999999999999998
No 3
>KOG0792|consensus
Probab=99.97 E-value=5.9e-30 Score=241.04 Aligned_cols=160 Identities=38% Similarity=0.561 Sum_probs=139.8
Q ss_pred cHHHHHHHHHHhhhhhcccccCCCccccccceeEEeEEecc-CCCCCch---hHHHHHHHHHHhhcccceeecCHHHHHH
Q psy16878 34 TPELERRIMENHKKHALHCTCNENTAASDGLLLTLGYKVKH-RPRPPKI---PHRYLFCLQIKRDLSQGLLHCNENTAAL 109 (213)
Q Consensus 34 ~~~le~ki~~~hk~~~~~~~~~~~~~~~~g~~~~l~frvkf-~p~~~~l---~~r~l~~lQ~~~di~~g~l~~~~~~a~~ 109 (213)
|.|++|.+.++..+.. .+..++|||+| .|+|..| +||++||+|+|.||++||++|+.++|+.
T Consensus 78 WvdleK~lkkql~k~a--------------~~p~l~frV~fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~Ct~~qail 143 (1144)
T KOG0792|consen 78 WVDLEKPLKKQLIKVA--------------NPPLLHFRVKFYVPDPSGLQEEATRYQYYLQVKKDILEGRLPCTLNQAIL 143 (1144)
T ss_pred eeccchhHHHhhhccC--------------CCceEEEEEEEEecChhHHHHHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence 7778887777666432 25699999999 6788887 9999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCcccccccccC---Cc----hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCe
Q psy16878 110 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPN---QT----PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVK 182 (213)
Q Consensus 110 Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~---~~----~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~ 182 (213)
||+|+.||++|||+...+ .+++....++|. +. ++++++|.+.|+.++|++++||+..||+.|++|++||++
T Consensus 144 LA~yavQae~gdy~~~~s--~~~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e 221 (1144)
T KOG0792|consen 144 LASYAVQAEFGDYNQKQS--QDGLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEE 221 (1144)
T ss_pred HHHhhhhhhhcchhhhcC--CccchhccccccccccchhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccce
Confidence 999999999999996654 455544444444 33 489999999999999999999999999999999999999
Q ss_pred eeeccCCCCCeEEEEEeCCccEEEcCC
Q psy16878 183 LHPAKDHDNILLNLSVAHMGILVFQNQ 209 (213)
Q Consensus 183 ~f~vkd~~~~~~~lgv~~~Gi~v~~~~ 209 (213)
+|+++|..|.+|.|||+..||.|+..+
T Consensus 222 ~~~akD~~g~~i~lGi~~~Gi~V~~~~ 248 (1144)
T KOG0792|consen 222 FHRAKDLHGNDINLGIARVGILVPGQN 248 (1144)
T ss_pred ecccccCCCcceeeeeeeceeEeeccC
Confidence 999999999999999999999999844
No 4
>KOG3529|consensus
Probab=99.95 E-value=8e-28 Score=221.33 Aligned_cols=190 Identities=26% Similarity=0.384 Sum_probs=158.8
Q ss_pred hhhhhhcCCCCCCCCCCCccccCCCCCCCcHHHHHHHHHHhhhhhcccccCCCccccccceeEEeEEeccCCCCCc--h-
Q psy16878 5 IVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHALHCTCNENTAASDGLLLTLGYKVKHRPRPPK--I- 81 (213)
Q Consensus 5 ~~q~e~GD~~~~~~~~~~yl~~~~~~p~q~~~le~ki~~~hk~~~~~~~~~~~~~~~~g~~~~l~frvkf~p~~~~--l- 81 (213)
+|+..+| .-+..+++..|...- .-..|.++++++..+--. + ..++++.|+++|||+... +
T Consensus 41 lv~~~~g-lre~~yfgl~~~d~~--~~~~wl~~d~~v~~~d~~-------------k-~~~~~~~f~akfy~E~v~eeli 103 (596)
T KOG3529|consen 41 LVVKTIG-LRESWYFGLQYTDSK--GEPTWLKLDKKVLDQDVP-------------K-DSPLNFHFHAKFYPEDVAEELI 103 (596)
T ss_pred HHhccCC-CchhhhcccccccCC--CCcchhhccchhhhhhcC-------------C-CCCcceeeeeecchHHHHHHHH
Confidence 3556677 545555555443331 112477788776653321 1 123799999999998764 2
Q ss_pred --hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccCCc--------hHHHHHHH
Q psy16878 82 --PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT--------PELERRIM 151 (213)
Q Consensus 82 --~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~--------~~~~~~i~ 151 (213)
+|.+|||||+|..|+++.+.|+.|+++.||||++|+.+|||+.+.+ ..+++.....+|... ..|+.+|.
T Consensus 104 ~~~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~-~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~ 182 (596)
T KOG3529|consen 104 QDITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKETH-KVGRLAGDRLLPQRVLDQHKMTPDMWEDRIK 182 (596)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccchhh-hhhccccCcccchhhhhhccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887 578888888888752 58999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeeccCCCCCeEEEEEeCCccEEEcCCccc
Q psy16878 152 ENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKI 212 (213)
Q Consensus 152 ~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd~~~~~~~lgv~~~Gi~v~~~~~k~ 212 (213)
+.|.+++||+..+|++.||++++.||+||+.+|+++++.|..+||||+..|+.+|+...|+
T Consensus 183 ~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~~~~k~ 243 (596)
T KOG3529|consen 183 EWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYDESDKL 243 (596)
T ss_pred HHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999988875
No 5
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.93 E-value=2e-25 Score=168.29 Aligned_cols=103 Identities=39% Similarity=0.607 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCccccc-------cccc--------CCchHH
Q psy16878 82 PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSY-------KFVP--------NQTPEL 146 (213)
Q Consensus 82 ~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~-------~~~P--------~~~~~~ 146 (213)
.+++++|+|+|++|++|+++|+.++|++||||++|+++||+++......+++... .++| ...++|
T Consensus 9 ~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~~ 88 (126)
T PF00373_consen 9 ITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMKQKEW 88 (126)
T ss_dssp HHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCSTHHHH
T ss_pred HHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhhHHHH
Confidence 8999999999999999999999999999999999999999994332234444322 3889 235789
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeee
Q psy16878 147 ERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLH 184 (213)
Q Consensus 147 ~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f 184 (213)
+++|.+.|++++|+|+.+|+..||+.|++||+||+++|
T Consensus 89 ~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 89 EKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 99999999999999999999999999999999999998
No 6
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.89 E-value=1.1e-22 Score=165.28 Aligned_cols=120 Identities=38% Similarity=0.525 Sum_probs=104.1
Q ss_pred eeEEeEEeccCCCC-Cch----hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccc
Q psy16878 65 LLTLGYKVKHRPRP-PKI----PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFV 139 (213)
Q Consensus 65 ~~~l~frvkf~p~~-~~l----~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~ 139 (213)
++++.||++||+.+ ..+ ....++|.|++.||++|++||+.++++.||||.+|+++||+++..+..........++
T Consensus 75 ~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~l 154 (207)
T smart00295 75 PLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFL 154 (207)
T ss_pred CcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeC
Confidence 47999999997654 222 5566999999999999999999999999999999999999987654223455667899
Q ss_pred cCC--------chHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeee
Q psy16878 140 PNQ--------TPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLH 184 (213)
Q Consensus 140 P~~--------~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f 184 (213)
|+. .+.|.++|.+.|+++.|+|+.+|+..||+.|++||+||+++|
T Consensus 155 P~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 155 PKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred ChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 986 257999999999999999999999999999999999999987
No 7
>KOG3531|consensus
Probab=99.78 E-value=2e-20 Score=173.28 Aligned_cols=146 Identities=54% Similarity=0.867 Sum_probs=137.1
Q ss_pred eeEEeEEecc-CCCCCch---hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCccccccccc
Q psy16878 65 LLTLGYKVKH-RPRPPKI---PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVP 140 (213)
Q Consensus 65 ~~~l~frvkf-~p~~~~l---~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P 140 (213)
...++|.|+| .|+|..+ .+|++|-+|+++|+..|++.|...+|..|+++.+|.+.|||+.. +...+++...|+|
T Consensus 110 ~~~~~~~vkf~~p~~~~l~ee~trylf~~q~k~dl~~G~l~c~d~ta~lLss~~~qse~gdf~~~--~d~~~l~~~~~~p 187 (1036)
T KOG3531|consen 110 DVVLRFVVKFFPPDPIQLQEEYTRYLFALQIKRDLALGRLTCNDTTAALLSSHIVQSEIGDFDEY--LDREHLAHTRYLP 187 (1036)
T ss_pred chhhheeecccCCCccccchhHHHHhhhhccccccccCCccCCCchhhhhhcccccccCCchhcc--ccceeeeeeecCc
Confidence 3588999999 5688887 99999999999999999999999999999999999999999433 3577899999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeeccCCCCCeEEEEEeCCccEEEcCCcccC
Q psy16878 141 NQTPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN 213 (213)
Q Consensus 141 ~~~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd~~~~~~~lgv~~~Gi~v~~~~~k~~ 213 (213)
.+ ..++++|.+-|+++.|+||+++.+..|..|+++++||++++.++|-+|..+-++|...||.|++..+|||
T Consensus 188 ~q-~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~Vfr~~tkin 259 (1036)
T KOG3531|consen 188 NQ-DELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILVFRGLTKIN 259 (1036)
T ss_pred hH-HHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHHHhcceecc
Confidence 99 7889999999999999999999999999999999999999999999999999999999999999999998
No 8
>KOG4261|consensus
Probab=99.70 E-value=2.2e-18 Score=158.66 Aligned_cols=172 Identities=20% Similarity=0.252 Sum_probs=144.3
Q ss_pred HHHHHHHhhhhh---cccccCCCc-cccccc--eeEEeEEecc-CCCCCc---h-hHHHHHHHHHHhhcccceeecCHHH
Q psy16878 38 ERRIMENHKKHA---LHCTCNENT-AASDGL--LLTLGYKVKH-RPRPPK---I-PHRYLFCLQIKRDLSQGLLHCNENT 106 (213)
Q Consensus 38 e~ki~~~hk~~~---~~~~~~~~~-~~~~g~--~~~l~frvkf-~p~~~~---l-~~r~l~~lQ~~~di~~g~l~~~~~~ 106 (213)
++|..++.|+.. +.||+.+++ ....|. .+++.+|.+| |.+... + +...|+|.|.|++|+.|.+|++.+.
T Consensus 154 ~~kme~Lkkkl~td~el~wld~~rtlreqgide~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~k 233 (1003)
T KOG4261|consen 154 ERKMEKLRKKLHTDDELNWLDHSRTLREQGIDEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEK 233 (1003)
T ss_pred hhhhHHHHhhcccchhhhhHHHhHHHHhcCccHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHH
Confidence 345556666543 789988877 444554 4688888888 776543 2 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCcccccccccCCc--hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeee
Q psy16878 107 AALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT--PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLH 184 (213)
Q Consensus 107 a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~--~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f 184 (213)
|..+|+++.|..||+++.++| . +++....++|+.- ...+.+|...|+.+.||+..+|+..|.++|+.|++||++||
T Consensus 234 A~e~a~~qshiq~g~~~~~k~-k-~~ld~kd~lpk~y~k~k~ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff 311 (1003)
T KOG4261|consen 234 ACEFAGFQSHIQFGPHNEDKH-K-GFLDLKDFLPKEYVKQKGEKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFF 311 (1003)
T ss_pred HHHHhccccccccCCchhhcc-c-cchhccccChHHHhccccchhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEE
Confidence 999999999999999999887 3 8888889999852 23389999999999999999999999999999999999999
Q ss_pred eccCC-----CCCeEEEEEeCCccEEEcCCcc
Q psy16878 185 PAKDH-----DNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 185 ~vkd~-----~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
-||.+ .++|.+|||+...+.-.+.++|
T Consensus 312 ~VKek~~gknklVprlLgv~K~svmr~de~tk 343 (1003)
T KOG4261|consen 312 LVKEKMKGKNKLVPRLLGVTKESVMRVDEKTK 343 (1003)
T ss_pred EehhhccCcccccchhhhhhHHhhhhcchhhh
Confidence 99753 4689999999988877777665
No 9
>KOG3531|consensus
Probab=99.52 E-value=3.8e-15 Score=138.62 Aligned_cols=196 Identities=17% Similarity=0.046 Sum_probs=155.6
Q ss_pred ChhhhhhhhhcCCCCCCCCCCCccccCCCCCCCcHHHHHHHHHHhhhhhccc------------------------ccCC
Q psy16878 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHALHC------------------------TCNE 56 (213)
Q Consensus 1 l~s~~~q~e~GD~~~~~~~~~~yl~~~~~~p~q~~~le~ki~~~hk~~~~~~------------------------~~~~ 56 (213)
|+||++|+|+||| +++.++.||+..+++|+| ..+++||++.|++|...| |+..
T Consensus 159 Lss~~~qse~gdf--~~~~d~~~l~~~~~~p~q-~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~ 235 (1036)
T KOG3531|consen 159 LSSHIVQSEIGDF--DEYLDREHLAHTRYLPNQ-DELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDR 235 (1036)
T ss_pred hhcccccccCCch--hccccceeeeeeecCchH-HHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhc
Confidence 6899999999999 445688999999999999 889999999999997322 2222
Q ss_pred Cc------cccccceeEEeEEecc-CCCCCch---hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCC
Q psy16878 57 NT------AASDGLLLTLGYKVKH-RPRPPKI---PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSED 126 (213)
Q Consensus 57 ~~------~~~~g~~~~l~frvkf-~p~~~~l---~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~ 126 (213)
.+ +..-|. ..|++..|+ .+++.++ .+|+.+|||.+++...|-|.|+.|.++..+.+..|+..|++.+.
T Consensus 236 Eg~~~~lav~hmgi-~Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk~cve~h- 313 (1036)
T KOG3531|consen 236 EGTKINLAVAHMGI-LVFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWKICVEHH- 313 (1036)
T ss_pred ccchHHHHHHhhhh-HHHhcceeccCCCHHHHHHHHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHhcccccc-
Confidence 12 122232 367788888 5565554 89999999999999999999999999999999999999998543
Q ss_pred CCCCCcccc---cccccC-CchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeeccCCCCCeEEEEEeCCc
Q psy16878 127 YPDHTYLSS---YKFVPN-QTPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMG 202 (213)
Q Consensus 127 ~~~~~~l~~---~~~~P~-~~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd~~~~~~~lgv~~~G 202 (213)
+|++. ..+.|+ ..-.--+.+...|++.+|+.+.+++...++++.+.+.||++.++.++..+.+..+..-+.|
T Consensus 314 ----~ffr~~~~~~~k~k~~~~S~gssfrysgrtqkq~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~~~l~sd~~~~ 389 (1036)
T KOG3531|consen 314 ----AFFRLVEEPKPKPKTVFFSKGSSFRYSGRTQKQLLDYVREGGKKREPFERKHSKSHSTRRGLYSSPYGLVSDVPEQ 389 (1036)
T ss_pred ----chhhhhcccCCCCCceeecccchhhhcCcchhccchhhhhcccccchhhcccccccccchhhccCCchhhhhcccc
Confidence 23331 222222 2223346788999999999999999999999999999999999988887777778888888
Q ss_pred cEE
Q psy16878 203 ILV 205 (213)
Q Consensus 203 i~v 205 (213)
+..
T Consensus 390 ~~~ 392 (1036)
T KOG3531|consen 390 HRN 392 (1036)
T ss_pred ccc
Confidence 876
No 10
>KOG0248|consensus
Probab=99.39 E-value=2.4e-13 Score=124.61 Aligned_cols=142 Identities=18% Similarity=0.276 Sum_probs=116.6
Q ss_pred EEeEEeccCCCCCch----hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCccc--cccccc
Q psy16878 67 TLGYKVKHRPRPPKI----PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLS--SYKFVP 140 (213)
Q Consensus 67 ~l~frvkf~p~~~~l----~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~--~~~~~P 140 (213)
.+..+.++|--.... ..|-|++.|.-+.|..|+.|.+.+.+..+|||.+|.++||-+.. + ..+-|. .++|.|
T Consensus 675 ~l~~~~r~y~~~~~~~et~~erlll~~~~s~eIv~gr~p~~~~l~e~~AaL~aq~~~gd~~~~-~-k~q~l~qv~~rFyP 752 (936)
T KOG0248|consen 675 ALSLRMRHYWGHLALTETPIERQFLVWRASEEIVNGRIPLSNQLCESLAALYAQMVFGDANQS-L-SDQQFEFISQRFYP 752 (936)
T ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHhhchHHhhcCcCcchHHHHHHHHHHHHHHhhcccccc-c-hHHHHHHHHHHhCh
Confidence 456666665433322 88999999999999999999999999999999999999997632 1 122222 257888
Q ss_pred CC------chHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeeccC-----CCCCeEEEEEeCCccEEEcCC
Q psy16878 141 NQ------TPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD-----HDNILLNLSVAHMGILVFQNQ 209 (213)
Q Consensus 141 ~~------~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd-----~~~~~~~lgv~~~Gi~v~~~~ 209 (213)
+. .+.+..+|...|..|+|||+.|+..-||+.|++||.||..+|.++- +.+.-+||+|+.+||.+.+.|
T Consensus 753 ~ryrdga~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd~N 832 (936)
T KOG0248|consen 753 SKMLDVACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLDRN 832 (936)
T ss_pred hhhhccCCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceecccc
Confidence 75 3567889999999999999999999999999999999999998863 456789999999999999887
Q ss_pred c
Q psy16878 210 T 210 (213)
Q Consensus 210 ~ 210 (213)
+
T Consensus 833 ~ 833 (936)
T KOG0248|consen 833 H 833 (936)
T ss_pred c
Confidence 5
No 11
>KOG3527|consensus
Probab=99.33 E-value=1.3e-13 Score=128.99 Aligned_cols=93 Identities=35% Similarity=0.521 Sum_probs=78.3
Q ss_pred ChhhhhhhhhcCCCCCCCCCCCccccCCCCCCCcHHHHHHHHHHhhhhhc-------ccccC------------------
Q psy16878 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAL-------HCTCN------------------ 55 (213)
Q Consensus 1 l~s~~~q~e~GD~~~~~~~~~~yl~~~~~~p~q~~~le~ki~~~hk~~~~-------~~~~~------------------ 55 (213)
|+||.||+|+|||++++++ .+|+++|+|.|+|..+++++|+++||.|+. ..|++
T Consensus 150 lgsy~vq~E~gdYd~ee~~-~~y~~df~~aPnqt~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKds 228 (975)
T KOG3527|consen 150 LGSYTVQSELGDYDPEEHG-SDYLSDFKFAPNQTKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDS 228 (975)
T ss_pred hhhHhHHhHhccCCHHHcc-cchhhhhccCcchhhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhccccccccccc
Confidence 7899999999999999885 599999999999999999999999999981 12222
Q ss_pred -----CCcccccccee-EEeEEeccCCCCCch---hHHHHHHHHHHhh
Q psy16878 56 -----ENTAASDGLLL-TLGYKVKHRPRPPKI---PHRYLFCLQIKRD 94 (213)
Q Consensus 56 -----~~~~~~~g~~~-~l~frvkf~p~~~~l---~~r~l~~lQ~~~d 94 (213)
|.++|++|+.+ +-++|++-|.||..| ..|+.||+-+|..
T Consensus 229 egvdi~lgvca~glliy~d~lrinrfawPKilKisykR~~FyiKirPg 276 (975)
T KOG3527|consen 229 EGVDIMLGVCASGLLIYRDRLRINRFAWPKILKISYKRSNFYIKIRPG 276 (975)
T ss_pred ccceeeecccccceEEeechhhhccccCchhhhhccceeeeEEEecCC
Confidence 23379999764 778999999999776 8999999988753
No 12
>KOG4371|consensus
Probab=99.33 E-value=1e-12 Score=124.87 Aligned_cols=147 Identities=17% Similarity=0.233 Sum_probs=127.1
Q ss_pred ccceeEEeEEeccCCCCCch-------hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCccc
Q psy16878 62 DGLLLTLGYKVKHRPRPPKI-------PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLS 134 (213)
Q Consensus 62 ~g~~~~l~frvkf~p~~~~l-------~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~ 134 (213)
.++|..+.+||+|||..... .+|.-+|+|.++++++.++.-..+-+.+|||+++|++.|+..+..+ ..+|+.
T Consensus 584 ~~PP~~~h~rv~~y~s~l~~is~~~akltrse~Y~~~q~qvLeeq~V~~~da~f~laaFalqadsGNr~~n~~-~gdysd 662 (1332)
T KOG4371|consen 584 VKPPYVLHLRVKFYPSILDFISTDVAKLTRSELYLQCQRQVLEEQIVPKRDAAFELAAFALQADSGNRPPNPV-IGDYSD 662 (1332)
T ss_pred cCCCeEEEEEEEeccccCcchhhhhhhhhhhHHHHhhhHHHHhhcccccchhhhhHHhhhhhhhcCCCCCCcc-ccccCC
Confidence 35678999999999986532 6699999999999999999889999999999999999999998776 478999
Q ss_pred ccccccCCc------hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeec-cC----------CCCCeEEEE
Q psy16878 135 SYKFVPNQT------PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPA-KD----------HDNILLNLS 197 (213)
Q Consensus 135 ~~~~~P~~~------~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~v-kd----------~~~~~~~lg 197 (213)
..+|+|.+. .-+...+.+.|....|.+..+|...|++++++.+.|+++++++ ++ ..+.+.|+|
T Consensus 663 P~hY~ps~yss~e~q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~g 742 (1332)
T KOG4371|consen 663 PQHYLPSKYSSFEDQSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIG 742 (1332)
T ss_pred hhhhcccceecccchhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCcccc
Confidence 999999973 2355666689999999999999999999999999999999876 22 236789999
Q ss_pred EeCCccEEEcCC
Q psy16878 198 VAHMGILVFQNQ 209 (213)
Q Consensus 198 v~~~Gi~v~~~~ 209 (213)
.+++||.||...
T Consensus 743 p~prgIsi~~p~ 754 (1332)
T KOG4371|consen 743 PMPRGISIYEPQ 754 (1332)
T ss_pred ccccceeccccC
Confidence 999999999763
No 13
>KOG3530|consensus
Probab=99.28 E-value=1.7e-12 Score=117.74 Aligned_cols=48 Identities=48% Similarity=0.776 Sum_probs=46.1
Q ss_pred ChhhhhhhhhcCCCCCCCCCCCccccCCCCCCCcHHHHHHHHHHhhhhh
Q psy16878 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHA 49 (213)
Q Consensus 1 l~s~~~q~e~GD~~~~~~~~~~yl~~~~~~p~q~~~le~ki~~~hk~~~ 49 (213)
||||+||||+|||++++| ..+|+++|+|+|+|+++||.+|.+.||+++
T Consensus 130 LaAl~lQsELGDYn~~~H-t~~yVSefRf~p~Qte~LE~~I~e~hK~~r 177 (616)
T KOG3530|consen 130 LAALILQSELGDYNEEEH-TGGYVSEFRFLPNQTEELEERIFELHKELR 177 (616)
T ss_pred HHHHHHHHHhcCCChhhc-cccceeeeEecccccHHHHHHHHHHHHHhc
Confidence 799999999999999988 579999999999999999999999999987
No 14
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=98.67 E-value=1.9e-08 Score=72.00 Aligned_cols=36 Identities=50% Similarity=0.799 Sum_probs=33.7
Q ss_pred CCCCeeeeccCCCCCeEEEEEeCCccEEEcCCcccC
Q psy16878 178 LYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN 213 (213)
Q Consensus 178 ~YG~~~f~vkd~~~~~~~lgv~~~Gi~v~~~~~k~~ 213 (213)
+||+++|+|+|++|.+++|||++.||.||+++.++|
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~~~~ 36 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGTPIN 36 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCCEEE
Confidence 699999999999999999999999999999987654
No 15
>KOG3552|consensus
Probab=98.66 E-value=6e-08 Score=92.16 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=103.5
Q ss_pred eeEEeEEeccCC-CCCch-----hHHHHHHHHHHhhcccceeec--CHHHHHHHHHHHHHHH-hCCCCCCCCCCCCcccc
Q psy16878 65 LLTLGYKVKHRP-RPPKI-----PHRYLFCLQIKRDLSQGLLHC--NENTAALMASYIVQAE-CGDYVSEDYPDHTYLSS 135 (213)
Q Consensus 65 ~~~l~frvkf~p-~~~~l-----~~r~l~~lQ~~~di~~g~l~~--~~~~a~~Laal~lQa~-~Gd~~~~~~~~~~~l~~ 135 (213)
.++..|||-|.| +|..| ++..++|+|.+.||...|+.. -.+.|..||||.+|.. +-+-.+.+. +..|+..
T Consensus 260 k~RCLFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elALRLAALhm~~~~~a~~q~qKi-slKyIEk 338 (1298)
T KOG3552|consen 260 KLRCLFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELALRLAALHMHQHALANNQAQKI-SLKYIEK 338 (1298)
T ss_pred ceeEEEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHHHHHHHHHHHHHHHhhccccch-hhhhhhh
Confidence 578999999977 56654 899999999999999999975 6778999999999753 333223333 3566653
Q ss_pred ----cccccCCc------hHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHhcCcCCCCeeeeccCCCC---CeEE
Q psy16878 136 ----YKFVPNQT------PELERRIMENHKKH-------AGQSPAAADLNLLETARRCELYGVKLHPAKDHDN---ILLN 195 (213)
Q Consensus 136 ----~~~~P~~~------~~~~~~i~~~h~~l-------~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd~~~---~~~~ 195 (213)
++|+|... +++.+.|...-|.. +-+|..+|+++||++...|++||...|.+.-..+ ..+.
T Consensus 339 ewGlE~Fvp~sll~~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se~~ 418 (1298)
T KOG3552|consen 339 EWGLERFVPVSLLEGMKRKEIKKAISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESERV 418 (1298)
T ss_pred hhchhhcccHHHHhhhhHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhcccceeEE
Confidence 58899752 35555554433332 2357889999999999999999999999864433 7778
Q ss_pred EEEeCC-ccEE
Q psy16878 196 LSVAHM-GILV 205 (213)
Q Consensus 196 lgv~~~-Gi~v 205 (213)
|=|+++ ||..
T Consensus 419 LLVgpryGiSq 429 (1298)
T KOG3552|consen 419 LLVGPRYGISQ 429 (1298)
T ss_pred EEeccccchhH
Confidence 888887 7654
No 16
>KOG0792|consensus
Probab=98.28 E-value=3.5e-07 Score=88.30 Aligned_cols=98 Identities=32% Similarity=0.391 Sum_probs=68.2
Q ss_pred ChhhhhhhhhcCCCCCCCCC-CCccccCCCCCCCcH----HHHHHHHHHhhhhh-------cccccCCCc----------
Q psy16878 1 MASYIVQAECGDYVSEDYPD-HTYLSSYKFVPNQTP----ELERRIMENHKKHA-------LHCTCNENT---------- 58 (213)
Q Consensus 1 l~s~~~q~e~GD~~~~~~~~-~~yl~~~~~~p~q~~----~le~ki~~~hk~~~-------~~~~~~~~~---------- 58 (213)
||||+||||+|||+..++.+ ..|+..+.+.+.|.+ ++++||.++|+.|+ |.||++.-+
T Consensus 144 LA~yavQae~gdy~~~~s~~~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~ 223 (1144)
T KOG0792|consen 144 LASYAVQAEFGDYNQKQSQDGLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFH 223 (1144)
T ss_pred HHHhhhhhhhcchhhhcCCccchhccccccccccchhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceec
Confidence 79999999999999776532 237888888888877 99999999999998 566655211
Q ss_pred -------------cccccceeEE--eEEeccCCCCCc--h-hHHHHHHHHHHhhcccc
Q psy16878 59 -------------AASDGLLLTL--GYKVKHRPRPPK--I-PHRYLFCLQIKRDLSQG 98 (213)
Q Consensus 59 -------------~~~~g~~~~l--~frvkf~p~~~~--l-~~r~l~~lQ~~~di~~g 98 (213)
++..|+.+.- .-...+|||... + +.+..|++++++..-.+
T Consensus 224 ~akD~~g~~i~lGi~~~Gi~V~~~~g~~~~~~~W~di~~is~~ks~~~le~~~~~~~~ 281 (1144)
T KOG0792|consen 224 RAKDLHGNDINLGIARVGILVPGQNGRQSVKFPWGDIIKISFKKSTFGLEQRNKDSES 281 (1144)
T ss_pred ccccCCCcceeeeeeeceeEeeccCccccceechhhhhhhhcchhhhhhhhhhccccc
Confidence 2334432211 122235777553 3 78888999888766665
No 17
>KOG4371|consensus
Probab=98.11 E-value=2.7e-06 Score=82.06 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=55.3
Q ss_pred cccccce-eEEeEEeccCCCCCc-h---hHHHHHHHHHHhhccc---ceeecCHHHHHHHHHHHHHHHhCCCCCC
Q psy16878 59 AASDGLL-LTLGYKVKHRPRPPK-I---PHRYLFCLQIKRDLSQ---GLLHCNENTAALMASYIVQAECGDYVSE 125 (213)
Q Consensus 59 ~~~~g~~-~~l~frvkf~p~~~~-l---~~r~l~~lQ~~~di~~---g~l~~~~~~a~~Laal~lQa~~Gd~~~~ 125 (213)
.++.|.+ +.++|||++|.+... | ..|+.+|+|+++|++. +| +++++.|+.+|++++|+++||-.+.
T Consensus 108 ld~~~rp~l~l~frv~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr-~~~e~a~~~~a~lalq~d~g~~~~g 181 (1332)
T KOG4371|consen 108 LDETFRPELSLEFRVSGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPR-PAPEKAAEEYARLALQNDFGEEEEG 181 (1332)
T ss_pred cCccCCeeEEEEEEEEEeecCceeccCCCCccchhhhhhhhhhccccCC-cchHHHHHHHHhhhhcCccCcCCcc
Confidence 4556655 589999999998654 4 8999999999999996 55 6899999999999999999996443
No 18
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=98.02 E-value=4e-05 Score=54.14 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=58.8
Q ss_pred HHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccCCchHHHHHHHHHHHhhcCCCHHHHHH
Q psy16878 88 CLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADL 167 (213)
Q Consensus 88 ~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~~~~~~~i~~~h~~l~G~s~~~A~~ 167 (213)
|-++...|.+-.-..+.++-+.|=||--||..||++... ++.+. ...+.--+.|+++.|||+.+|+.
T Consensus 5 F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~---P~~~d----------~~~~~K~~AW~~l~~ms~~eA~~ 71 (85)
T cd00435 5 FEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTER---PGMFD----------LKGRAKWDAWNSLKGMSKEDAMK 71 (85)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCC---CCccc----------HhhHHHHHHHHHcCCCCHHHHHH
Confidence 344444455555678999999999999999999997432 22221 12233456899999999999999
Q ss_pred HHHHHHhcC-cCCC
Q psy16878 168 NLLETARRC-ELYG 180 (213)
Q Consensus 168 ~fL~~a~~l-~~YG 180 (213)
.|++.+.++ |.||
T Consensus 72 ~YV~~~~~l~~~~~ 85 (85)
T cd00435 72 AYIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHHHhhccC
Confidence 999999775 6766
No 19
>KOG4257|consensus
Probab=97.77 E-value=7e-05 Score=69.95 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=109.5
Q ss_pred eeEEeEEeccCCCCCc-h-----hHHHHHHHHHHhhccc-ceeecCHHHHHHHHHHHHHHHhCCCCCCCCCC---CCccc
Q psy16878 65 LLTLGYKVKHRPRPPK-I-----PHRYLFCLQIKRDLSQ-GLLHCNENTAALMASYIVQAECGDYVSEDYPD---HTYLS 134 (213)
Q Consensus 65 ~~~l~frvkf~p~~~~-l-----~~r~l~~lQ~~~di~~-g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~---~~~l~ 134 (213)
.|++.+|+||.|+... + .|..+||-|+++|... --..++.+.|++||+|-+.-.|-+.+-..... -+++.
T Consensus 91 ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vrr~Fk~~~~na~~kksh~e~le 170 (974)
T KOG4257|consen 91 EWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVRRDFKEHQHNAPGKKSHLEDLE 170 (974)
T ss_pred hheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCcccCCCccccHHHHH
Confidence 5899999999998763 3 7888899999999775 44567999999999999999998875332111 22333
Q ss_pred c----cccccCCc------hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeeccCC--CCCeEEEEEeCC-
Q psy16878 135 S----YKFVPNQT------PELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDH--DNILLNLSVAHM- 201 (213)
Q Consensus 135 ~----~~~~P~~~------~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd~--~~~~~~lgv~~~- 201 (213)
. ..|+|+.. ..+.+.|..-+++...+++.|...+|..+-...-.+-++.|.+.=. =+.++-|.|+++
T Consensus 171 kevglksffPksl~~~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~s~WnisveLvvGPh~ 250 (974)
T KOG4257|consen 171 KEVGLKSFFPKSLHNPFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLGSGWNISVELVVGPHT 250 (974)
T ss_pred HHhhHHhhChHhhhcccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecccccceeEEEEecCcc
Confidence 2 36788862 5688889999999999999999999999877666667777877533 347788899998
Q ss_pred ccEEE
Q psy16878 202 GILVF 206 (213)
Q Consensus 202 Gi~v~ 206 (213)
||.-.
T Consensus 251 Gisy~ 255 (974)
T KOG4257|consen 251 GISYL 255 (974)
T ss_pred cceec
Confidence 98754
No 20
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=97.74 E-value=0.00012 Score=51.85 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=47.1
Q ss_pred eecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC
Q psy16878 100 LHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARRC 176 (213)
Q Consensus 100 l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l 176 (213)
..++.++-+.|-||.-||..||++... +..+ .-..+.=-+.|+++.|||+.+|+..|++.+.++
T Consensus 19 ~~~~~~~~L~LYalyKQAt~Gd~~~~~---P~~~----------d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~ 82 (87)
T PF00887_consen 19 SQLSNDDKLELYALYKQATHGDCDTPR---PGFF----------DIEGRAKWDAWKALKGMSKEEAMREYIELVEEL 82 (87)
T ss_dssp STS-HHHHHHHHHHHHHHHTSS--S-C---TTTT----------CHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcCCC---Ccch----------hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999998433 2332 122233356899999999999999999998653
No 21
>KOG3727|consensus
Probab=97.49 E-value=0.00018 Score=65.87 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=76.2
Q ss_pred HHHHhhcccceeec----CHHHHHHHHHHHHHHHhCCCCCCCCC--CCCcccccccccCC------chHHHHHHHHHHHh
Q psy16878 89 LQIKRDLSQGLLHC----NENTAALMASYIVQAECGDYVSEDYP--DHTYLSSYKFVPNQ------TPELERRIMENHKK 156 (213)
Q Consensus 89 lQ~~~di~~g~l~~----~~~~a~~Laal~lQa~~Gd~~~~~~~--~~~~l~~~~~~P~~------~~~~~~~i~~~h~~ 156 (213)
.-+++--..|+-.. +.|+-.-|+-|.+|-.-+. ++...+ .+.-+..+.|+.+. .+.+..+|.+.|+.
T Consensus 451 MAaCrLASKGktMADSSY~sEV~sIlsfL~MQ~~n~g-~~q~~~~~~~~d~np~~~vSPr~~rk~ksKQ~~~RILEAHqN 529 (664)
T KOG3727|consen 451 MAACRLASKGKTMADSSYQSEVQSILSFLKMQRPNSG-SRQAAPVKLPRDVNPECYVSPRYVRKLKSKQITQRILEAHQN 529 (664)
T ss_pred HHHhhHhhcCCccccccccHHHHHHHHHHHhcCCCCC-CCcCCcccCcCCCCchhhcCHHHHHHHhhHHHHHHHHHHhhh
Confidence 34555566777654 5667777888888865542 111111 11123333343322 24589999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcCcCCCCeeeeccCC-CCCeEEEEEeCCccEE
Q psy16878 157 HAGQSPAAADLNLLETARRCELYGVKLHPAKDH-DNILLNLSVAHMGILV 205 (213)
Q Consensus 157 l~G~s~~~A~~~fL~~a~~l~~YG~~~f~vkd~-~~~~~~lgv~~~Gi~v 205 (213)
.+-||-.||+++||+.-|+||.+|+++|-|+=+ ....=+|||+.+-+.-
T Consensus 530 VaQlsl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~NRLir 579 (664)
T KOG3727|consen 530 VAQLSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAYNRLIR 579 (664)
T ss_pred HhhhhhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhhhheee
Confidence 999999999999999999999999999988632 1122246766554433
No 22
>PTZ00458 acyl CoA binding protein; Provisional
Probab=97.12 E-value=0.0037 Score=44.55 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=50.1
Q ss_pred ecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC-cCC
Q psy16878 101 HCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARRC-ELY 179 (213)
Q Consensus 101 ~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l-~~Y 179 (213)
+.+.++-..|=||.-||..||++.... +.+ .-..+.=-+.|.++.|||+.+|+..|++.+.++ |.|
T Consensus 20 ~~s~d~~L~lYalyKQAt~G~c~~~~P---~~~----------d~~~raKw~AW~~l~~ms~~eA~~~YI~l~~~l~~~w 86 (90)
T PTZ00458 20 NLSVEIKLDLYKYYKQSTVGNCNIKEP---SMF----------KYQDRKKYEAWKSIENLNREDAKKRYVEIVTELFPNW 86 (90)
T ss_pred CCCHHHHHHHHHHHhhhccCCCCCCCC---Ccc----------cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcc
Confidence 579999999999999999999965332 221 111222345899999999999999999999876 444
No 23
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=97.04 E-value=0.0023 Score=43.68 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=59.0
Q ss_pred HHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccCCchHHHHHHHHHHHhhcCCCHHHHH
Q psy16878 87 FCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAAD 166 (213)
Q Consensus 87 ~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~~~~~~~i~~~h~~l~G~s~~~A~ 166 (213)
-|-|+..+|-+=.-..+.++...|-||.-|+..||-+.+.. +++.. .- +-=-+.|..++|.|..+|+
T Consensus 5 ~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekP---G~~d~---~g-------r~K~eAW~~LKGksqedA~ 71 (87)
T COG4281 5 RFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKP---GFFDI---VG-------RYKYEAWAGLKGKSQEDAR 71 (87)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCC---Ccccc---cc-------chhHHHHhhccCccHHHHH
Confidence 46788888776444567888999999999999999987764 33321 11 1113578899999999999
Q ss_pred HHHHHHHhcCc
Q psy16878 167 LNLLETARRCE 177 (213)
Q Consensus 167 ~~fL~~a~~l~ 177 (213)
..||..+..|.
T Consensus 72 qeYialVeeLk 82 (87)
T COG4281 72 QEYIALVEELK 82 (87)
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 24
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=96.50 E-value=0.0036 Score=46.41 Aligned_cols=49 Identities=41% Similarity=0.642 Sum_probs=36.6
Q ss_pred ChhhhhhhhhcCCCCCCCCCCCccccC-------CCCC--------CCcHHHHHHHHHHhhhhh
Q psy16878 1 MASYIVQAECGDYVSEDYPDHTYLSSY-------KFVP--------NQTPELERRIMENHKKHA 49 (213)
Q Consensus 1 l~s~~~q~e~GD~~~~~~~~~~yl~~~-------~~~p--------~q~~~le~ki~~~hk~~~ 49 (213)
|||+.+|+++||+++......+++... .++| ....+|+++|.+.|++.+
T Consensus 37 LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~~~~~I~~~~~~l~ 100 (126)
T PF00373_consen 37 LAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMKQKEWEKRILEQHKKLR 100 (126)
T ss_dssp HHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCSTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 699999999999994432234554321 3788 457799999999999876
No 25
>KOG3529|consensus
Probab=95.78 E-value=0.0073 Score=56.87 Aligned_cols=48 Identities=35% Similarity=0.468 Sum_probs=42.3
Q ss_pred ChhhhhhhhhcCCCCCCCCCCCccccCCCCCCC--------cHHHHHHHHHHhhhhh
Q psy16878 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--------TPELERRIMENHKKHA 49 (213)
Q Consensus 1 l~s~~~q~e~GD~~~~~~~~~~yl~~~~~~p~q--------~~~le~ki~~~hk~~~ 49 (213)
||||+||+..|||+...+ ..+++.....+|.+ ...|+++|..+|.+|+
T Consensus 134 las~~vqa~~gdy~~~~~-~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~ 189 (596)
T KOG3529|consen 134 LASYAVQAKYGDYDKETH-KVGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHR 189 (596)
T ss_pred HHHHHHHHHhccccchhh-hhhccccCcccchhhhhhccccHHHHHHHHHHHHHHHH
Confidence 699999999999997766 57899999999873 4689999999999987
No 26
>KOG0817|consensus
Probab=95.29 E-value=0.095 Score=40.47 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC-cCCC
Q psy16878 102 CNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARRC-ELYG 180 (213)
Q Consensus 102 ~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~l-~~YG 180 (213)
.+.++.+.|=||-=||..||++.... ++++. ..+.=-+.|+.+.||++.+|+..|++.+..+ +.|+
T Consensus 23 p~~ee~L~lYglyKQAt~G~~~~~kP---g~~d~----------~~k~Kw~AW~~l~~~s~~eA~~~Yv~~~~~l~~~~~ 89 (142)
T KOG0817|consen 23 PSNEELLKLYGLYKQATVGDCNTPKP---GFFDE----------EGKAKWQAWNSLGGMSKEEAMEAYVEKVEELIPKYG 89 (142)
T ss_pred CCHHHHHHHHHHHHhhccCCCCCCCC---chhhH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999976553 33321 1222234699999999999999999998764 5676
Q ss_pred Ceee
Q psy16878 181 VKLH 184 (213)
Q Consensus 181 ~~~f 184 (213)
...=
T Consensus 90 ~~~~ 93 (142)
T KOG0817|consen 90 AEAE 93 (142)
T ss_pred cccc
Confidence 5543
No 27
>KOG4335|consensus
Probab=95.00 E-value=0.0072 Score=55.01 Aligned_cols=128 Identities=16% Similarity=0.080 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCccccccc--ccCCc------hHHHHH-HHH
Q psy16878 82 PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKF--VPNQT------PELERR-IME 152 (213)
Q Consensus 82 ~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~--~P~~~------~~~~~~-i~~ 152 (213)
+.-+++|--+|.+++.|++.......+.+|+..+|.-.+.+++++| +...+..+.+ +|.-. .-|.+. +..
T Consensus 348 ~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh-~~~vl~lEelk~~~~t~~~~~~~~~wlef~~~~ 426 (558)
T KOG4335|consen 348 FYGCILFHEARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKH-VLLVLNLEELKSWDHTSPEEEEPILWLEFDIDS 426 (558)
T ss_pred hhhhhhhhhhhhhhhccccccCCceeeehhhhhcccceeecccccc-chhcccHHHhcccCCCCChhhcchhhhhhhhhc
Confidence 7888899999999999999999999999999999999999988877 4554433222 22211 123333 555
Q ss_pred HHHhh---cCCCHHHHH--HHHHHHHhcCcCCCCeeeeccC--------CCCCeEEEEEeCCccEEEcCCcc
Q psy16878 153 NHKKH---AGQSPAAAD--LNLLETARRCELYGVKLHPAKD--------HDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 153 ~h~~l---~G~s~~~A~--~~fL~~a~~l~~YG~~~f~vkd--------~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
.++.. .|.+...|+ ..+|+.|-.+|.||++++.-.| ..-++.-++|+ +|+.++...++
T Consensus 427 e~kn~n~~~gVs~ema~l~~~~~e~c~ei~~~ga~~~~pqd~ak~SpSD~~~~~~~vqv~-k~l~~ls~q~~ 497 (558)
T KOG4335|consen 427 EYKNVNKLLGVSSEMAELMSSLIEYCIEIPSQGAEPAGPQDSAKGSPSDHSSSPAPVQVN-KGLPKLSRQGS 497 (558)
T ss_pred cccCccceechhHHHHHHHHHHHHHheeehhccccccCcccccCCCCCcccccccccccc-ccchhhccchh
Confidence 55543 477777775 6689999999999999986543 34467888998 89999877654
No 28
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=94.45 E-value=0.033 Score=44.69 Aligned_cols=49 Identities=37% Similarity=0.411 Sum_probs=38.6
Q ss_pred ChhhhhhhhhcCCCCCCCCCCCccccCCCCCCC--------cHHHHHHHHHHhhhhh
Q psy16878 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--------TPELERRIMENHKKHA 49 (213)
Q Consensus 1 l~s~~~q~e~GD~~~~~~~~~~yl~~~~~~p~q--------~~~le~ki~~~hk~~~ 49 (213)
|||+.+|+++||+++..+....+....+++|.+ .+.+.++|.+.|+++.
T Consensus 125 Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (207)
T smart00295 125 LAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELI 181 (207)
T ss_pred HHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHHHcC
Confidence 699999999999987653224567777889985 3578899999999764
No 29
>KOG3878|consensus
Probab=92.29 E-value=0.3 Score=42.68 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=53.9
Q ss_pred cceeecCHHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Q psy16878 97 QGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARR 175 (213)
Q Consensus 97 ~g~l~~~~~~a~~Laal~lQa~~Gd~~~~~~~~~~~l~~~~~~P~~~~~~~~~i~~~h~~l~G~s~~~A~~~fL~~a~~ 175 (213)
--.++.+-|+-++|-||--|+.+|.|+++.++..++|.. +- ....+.|+.|-.||+.+|+..|..+.-+
T Consensus 48 GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv---~G-------nDr~~~W~~LG~~sre~AM~~FV~Lldr 116 (469)
T KOG3878|consen 48 GKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDV---IG-------NDRQQHWQLLGEISREQAMEGFVDLLDR 116 (469)
T ss_pred CCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeec---cc-------ChHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 345678999999999999999999999887765565532 22 2345678888889999999999887654
No 30
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=86.17 E-value=0.6 Score=31.67 Aligned_cols=14 Identities=36% Similarity=0.486 Sum_probs=10.7
Q ss_pred cceeEEeEEeccCC
Q psy16878 63 GLLLTLGYKVKHRP 76 (213)
Q Consensus 63 g~~~~l~frvkf~p 76 (213)
+.++++.|||||||
T Consensus 67 ~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 67 NPPFTLYFRVKFYP 80 (80)
T ss_dssp SSSEEEEEEESS--
T ss_pred CCCEEEEEEEEECC
Confidence 56789999999997
No 31
>KOG4335|consensus
Probab=77.21 E-value=2 Score=39.61 Aligned_cols=127 Identities=14% Similarity=0.226 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhhcccce--eecCHHHHHHHHHH-HHHHHhCCCCCCCCCCCCccc----ccccccCCc-----------
Q psy16878 82 PHRYLFCLQIKRDLSQGL--LHCNENTAALMASY-IVQAECGDYVSEDYPDHTYLS----SYKFVPNQT----------- 143 (213)
Q Consensus 82 ~~r~l~~lQ~~~di~~g~--l~~~~~~a~~Laal-~lQa~~Gd~~~~~~~~~~~l~----~~~~~P~~~----------- 143 (213)
..+.+ |--++++|+.++ ++|+.+.+..++|+ .+-.++|+|++..+ ....++ ...|+|.|.
T Consensus 221 ~a~~n-~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~-~~~gir~~~~~qs~f~~w~cs~~lslqlk~ 298 (558)
T KOG4335|consen 221 VARLN-YEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQPVRP-AACGIRLSEKLQSFFPAWLCSRGLSLQLKL 298 (558)
T ss_pred HHHHh-HHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCccccc-hhhhcchHHHHHHHhHHHHhhcchhhhhhh
Confidence 44444 457888999998 88999999999999 88899999988765 233444 235677652
Q ss_pred --------hHHHHHHHHHHHhhcCC---CHHHHH-----HHHHHHHhcCcCCCCeeee-ccCC---------CCCeEEEE
Q psy16878 144 --------PELERRIMENHKKHAGQ---SPAAAD-----LNLLETARRCELYGVKLHP-AKDH---------DNILLNLS 197 (213)
Q Consensus 144 --------~~~~~~i~~~h~~l~G~---s~~~A~-----~~fL~~a~~l~~YG~~~f~-vkd~---------~~~~~~lg 197 (213)
.+| ..+..+|+...-. +.-++. ..++..+-..+.||..+|+ ++|. ...++.+|
T Consensus 299 ~h~p~~~v~~w-p~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va 377 (558)
T KOG4335|consen 299 RHRPARAVPGW-PELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVSVA 377 (558)
T ss_pred ccCCccccccc-HHHHHHHhcCCccCCccchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeeehh
Confidence 122 3355566655211 111111 2456667778889988875 3431 23678888
Q ss_pred -EeCCccEEEcCCcc
Q psy16878 198 -VAHMGILVFQNQTK 211 (213)
Q Consensus 198 -v~~~Gi~v~~~~~k 211 (213)
|+..|++|-+...|
T Consensus 378 ~i~l~~vhv~~Ss~K 392 (558)
T KOG4335|consen 378 SISLEGVHVVDSSEK 392 (558)
T ss_pred hhhcccceeeccccc
Confidence 99999999877443
No 32
>KOG3784|consensus
Probab=75.22 E-value=4.3 Score=36.39 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=37.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhcCcCCCCeeeec--cC--CCCCeEEEEEeCCcc
Q psy16878 151 MENHKKHAGQSPAAADLNLLETARRCELYGVKLHPA--KD--HDNILLNLSVAHMGI 203 (213)
Q Consensus 151 ~~~h~~l~G~s~~~A~~~fL~~a~~l~~YG~~~f~v--kd--~~~~~~~lgv~~~Gi 203 (213)
.+.|.+|+.+-..+-+.+||+.|++|++||...|+- =| +.|.++.+-++.+-+
T Consensus 232 ~e~~~QL~slq~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~l 288 (407)
T KOG3784|consen 232 KEQYDQLKSLQEEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHEL 288 (407)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhh
Confidence 344556666666677889999999999999999964 23 456666665554433
No 33
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=45.42 E-value=23 Score=27.25 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.2
Q ss_pred CCCCeEEEEEeCCccEEEcCCcc
Q psy16878 189 HDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 189 ~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
+....++|-||.+||.|.+..|+
T Consensus 50 ~kk~kV~L~IS~dGi~v~D~~T~ 72 (139)
T cd01215 50 AHKTRITLQINIDGIKVLDEKTG 72 (139)
T ss_pred cccceEEEEEccCCEEEEcCCCC
Confidence 45678999999999999999876
No 34
>KOG3727|consensus
Probab=41.86 E-value=16 Score=34.44 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhhcccceeecCHHHHHHHHHHHHHHHh
Q psy16878 82 PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAEC 119 (213)
Q Consensus 82 ~~r~l~~lQ~~~di~~g~l~~~~~~a~~Laal~lQa~~ 119 (213)
+--..+|.|+|=+++...+.|+++++..+||++.|+.+
T Consensus 278 vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~~ 315 (664)
T KOG3727|consen 278 VRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVNH 315 (664)
T ss_pred eeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 55677999999999999999999999999999999865
No 35
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=36.28 E-value=44 Score=25.10 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.0
Q ss_pred CCCCeEEEEEeCCccEEEcCCcc
Q psy16878 189 HDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 189 ~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
+...++.|-||.+||.+.+..+|
T Consensus 38 ~k~~~V~L~IS~~Gv~v~d~~tk 60 (127)
T cd01274 38 ETIPRVTLDLTCNGVKFIDETFK 60 (127)
T ss_pred CCCCEEEEEEeCCeEEEEECCCC
Confidence 45678999999999999998876
No 36
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=31.02 E-value=52 Score=24.19 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.8
Q ss_pred CCCCCeEEEEEeCCccEEEcCCc
Q psy16878 188 DHDNILLNLSVAHMGILVFQNQT 210 (213)
Q Consensus 188 d~~~~~~~lgv~~~Gi~v~~~~~ 210 (213)
...+.++.|.|+..||.+.+..+
T Consensus 48 ~~~~~~V~l~vs~~gI~v~~~~t 70 (140)
T PF00640_consen 48 KKKPQKVTLNVSSDGIKVIDPDT 70 (140)
T ss_dssp TSTSEEEEEEEETTEEEEEETTT
T ss_pred cccCeEEEEEEcCCeEEEecCcc
Confidence 45678999999999999998765
No 37
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.78 E-value=70 Score=24.36 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=19.4
Q ss_pred CCCCeEEEEEeCCccEEEcCCcc
Q psy16878 189 HDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 189 ~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
+....+.|-||.+||.|.+..++
T Consensus 52 ~k~~~V~L~IS~~GI~v~d~~t~ 74 (142)
T cd01273 52 AKLQKVEIRISIDGVIIAEPKTK 74 (142)
T ss_pred ccCcEEEEEEECCeEEEEEcCCC
Confidence 44578999999999999988765
No 38
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.71 E-value=70 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.6
Q ss_pred CCCCeEEEEEeCCccEEEcCCcc
Q psy16878 189 HDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 189 ~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
+.+..+.|-|+.+||.|.+..++
T Consensus 42 ~k~~~V~L~IS~~gi~i~d~~t~ 64 (132)
T cd01267 42 EKIPKVELDISIKGVKIIDPKTK 64 (132)
T ss_pred CCCCeEEEEEEcCcEEEEeCCCC
Confidence 45678999999999999988765
No 39
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=24.43 E-value=96 Score=22.60 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.1
Q ss_pred CCCCCeEEEEEeCCccEEEcCCcc
Q psy16878 188 DHDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 188 d~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
.+.+.++.|-|+.+||.+.+..++
T Consensus 40 ~~~~~~v~l~vs~~gv~v~~~~~~ 63 (134)
T smart00462 40 KKEPQKVILSISSRGVKLIDEDTK 63 (134)
T ss_pred cCCCCEEEEEEECCcEEEEECCCC
Confidence 356789999999999999987664
No 40
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=24.21 E-value=97 Score=22.07 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.8
Q ss_pred CCCCeEEEEEeCCccEEEcCCcc
Q psy16878 189 HDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 189 ~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
..+.++.|-|++.||.+.+.+++
T Consensus 39 ~~~~~v~l~vs~~gv~l~d~~~~ 61 (123)
T cd00934 39 EKGQKVILSVSSDGVKLIDPKTK 61 (123)
T ss_pred cCCCEEEEEEEcCcEEEEeCCCC
Confidence 56789999999999999988763
No 41
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=23.84 E-value=21 Score=23.78 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=11.6
Q ss_pred ChhhhhhhhhcCCC
Q psy16878 1 MASYIVQAECGDYV 14 (213)
Q Consensus 1 l~s~~~q~e~GD~~ 14 (213)
++|++|||+-|++-
T Consensus 15 Ig~fAVqSdag~~y 28 (71)
T PF04202_consen 15 IGSFAVQSDAGYYY 28 (71)
T ss_pred HhhheeeecCcccc
Confidence 47899999999863
No 42
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.42 E-value=1e+02 Score=23.55 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.1
Q ss_pred CCCeEEEEEeCCccEEEcCCcc
Q psy16878 190 DNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 190 ~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
....+.|-||.+||.+.+..||
T Consensus 48 k~~kv~L~VS~~Gi~vvd~~Tk 69 (138)
T cd01268 48 KPVKAVLWVSGDGLRVVDEKTK 69 (138)
T ss_pred CCCEEEEEEecCcEEEEecCCC
Confidence 4667899999999999998876
No 43
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.90 E-value=1.1e+02 Score=23.69 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=19.6
Q ss_pred CCCCeEEEEEeCCccEEEcCCcc
Q psy16878 189 HDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 189 ~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
+.+..+.|-||.+||.+.+..+|
T Consensus 42 ~~~~~v~L~VS~~Girl~D~~t~ 64 (148)
T cd01212 42 PTPQTCILEISDRGLRMVDRSGP 64 (148)
T ss_pred CCCcEEEEEEecCcEEEEecCCC
Confidence 44678899999999999998775
No 44
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=21.57 E-value=1.6e+02 Score=24.02 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCcCCCCeeeeccCCCCCeEEEEEeCCccEEEcCCcc
Q psy16878 165 ADLNLLETARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTK 211 (213)
Q Consensus 165 A~~~fL~~a~~l~~YG~~~f~vkd~~~~~~~lgv~~~Gi~v~~~~~k 211 (213)
-..++|+.+|++ |--.|... ..+++++|+..||.|-+.+..
T Consensus 87 ~lI~~ID~aQq~---GkLP~v~~---~eevil~VSKyGiKvt~~d~~ 127 (200)
T PF10480_consen 87 ELINYIDSAQQD---GKLPFVPS---DEEVILSVSKYGIKVTDNDQR 127 (200)
T ss_pred HHHHHHHHHhhc---CcCCCCCC---CCeEEEEEeeccEEEeecCCc
Confidence 467889998875 43345322 247789999999999987653
Done!