RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16878
(213 letters)
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 150 bits (380), Expect = 3e-44
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 67 TLGYKVKHRPRPPKIP-----HRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGD 121
TL + K + L +Q + D+ G + + A A + Q + G
Sbjct: 161 TLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGP 220
Query: 122 YVSEDYPDHTYLSSYKFVPNQ--TPELERRIMENHKKHAGQSPAAADLNLLETARRCELY 179
+ + + +L F+P + + ER+I + HK S A + ++ AR + Y
Sbjct: 221 HNEQKHKAG-FLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTY 279
Query: 180 GVKLHPAKDHD-----NILLNLSVAHMGILVFQNQTKI 212
GV K+ + L + ++ +TK
Sbjct: 280 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKE 317
Score = 59.5 bits (144), Expect = 7e-11
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--TPELERRIMENHKKHA 49
A + Q + G + + + +L F+P + + ER+I + HK
Sbjct: 209 FAGFQCQIQFGPHNEQKHKAG-FLDLKDFLPKEYVKQKGERKIFQAHKNCG 258
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 144 bits (365), Expect = 1e-42
Identities = 61/152 (40%), Positives = 89/152 (58%), Gaps = 5/152 (3%)
Query: 66 LTLGYKVKHRPRPPKI----PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGD 121
+ VK P P RY CLQ+++D+ G L C+ T AL+ SY +Q+E GD
Sbjct: 88 WNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGD 147
Query: 122 YVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGV 181
Y E + Y+S +K PNQT ELE ++ME HK + +PA ADL LE A++ +YGV
Sbjct: 148 YDPELHGVD-YVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGV 206
Query: 182 KLHPAKDHDNILLNLSVAHMGILVFQNQTKIN 213
LH AKD + + + L V G+LV++++ +IN
Sbjct: 207 DLHKAKDLEGVDIILGVCSSGLLVYKDKLRIN 238
Score = 54.2 bits (130), Expect = 4e-09
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKH 48
+ SY +Q+E GDY E + Y+S +K PNQT ELE ++ME HK +
Sbjct: 136 LGSYTIQSELGDYDPELHGVD-YVSDFKLAPNQTKELEEKVMELHKSY 182
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 138 bits (349), Expect = 3e-40
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 66 LTLGYKVKHRPRPPKIP-----HRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECG 120
+T + K P + ++LF LQ+K+ + ++C + L+ASY VQA+ G
Sbjct: 93 VTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYG 152
Query: 121 DYVSEDYPDHTYLSSYKFVPNQTPE--------LERRIMENHKKHAGQSPAAADLNLLET 172
DY + +L+ + +P + E RI + +H G++ A++ L+
Sbjct: 153 DYDPSVHKRG-FLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKI 211
Query: 173 ARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN 213
A+ E+YGV ++ L L V +G+ ++ + ++
Sbjct: 212 AQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLT 252
Score = 48.8 bits (116), Expect = 3e-07
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE--------LERRIMENHKKH 48
+ASY VQA+ GDY + +L+ + +P + E RI + +H
Sbjct: 142 LASYAVQAKYGDYDPSVHKRG-FLAQEELLPKRVINLYQMTPEMWEERITAWYAEH 196
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 135 bits (340), Expect = 5e-40
Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 72 VKHRPRPPKIP-----HRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSED 126
+K + L +Q + D+ G + + A A Y Q + G + +
Sbjct: 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQK 60
Query: 127 YPDHTYLSSYKFVPNQTPE--LERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLH 184
+ +L F+P + + ER+I HK S A + ++ AR + YGV
Sbjct: 61 HKPG-FLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFF 119
Query: 185 PAKD-----HDNILLNLSVAHMGILVFQNQTKI 212
K+ + + L + ++ +TK
Sbjct: 120 LVKEKMKGKNKLVPRLLGITKECVMRVDEKTKE 152
Score = 49.9 bits (119), Expect = 8e-08
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPE--LERRIMENHKKHA 49
A Y Q + G + + + +L F+P + + ER+I HK
Sbjct: 44 FAGYQCQIQFGPHNEQKHKPG-FLELKDFLPKEYIKQKGERKIFMAHKNCG 93
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 134 bits (340), Expect = 8e-40
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 8/136 (5%)
Query: 84 RYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ- 142
L +Q + D+ G + + A A + Q + G + +E +L F+P +
Sbjct: 29 LNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPH-NEQKHKAGFLDLKDFLPKEY 87
Query: 143 -TPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKD-----HDNILLNL 196
+ ER+I + HK S A + ++ AR + YGV K+ + + L
Sbjct: 88 VKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLL 147
Query: 197 SVAHMGILVFQNQTKI 212
+ ++ +TK
Sbjct: 148 GITKECVMRVDEKTKE 163
Score = 52.5 bits (126), Expect = 9e-09
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--TPELERRIMENHKKHA 49
A + Q + G + +E +L F+P + + ER+I + HK
Sbjct: 55 FAGFQCQIQFGPH-NEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCG 104
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 137 bits (345), Expect = 5e-38
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 84 RYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT 143
LF LQ+K + ++C T+ L+ASY VQA GD+ + +L++ + +P +
Sbjct: 99 LKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHG-PGFLANDRLLPQRV 157
Query: 144 P--------ELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAKDHDNILLN 195
E E+ I ++H G A + L+ A+ E+YGV ++ N L
Sbjct: 158 TDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELW 217
Query: 196 LSVAHMGILVFQNQTKIN 213
L V +G+ +++ K+
Sbjct: 218 LGVDALGLNIYEKDDKLT 235
Score = 49.1 bits (116), Expect = 3e-07
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT--------PELERRIMENHKKH 48
+ASY VQA GD+ + +L++ + +P + E E+ I ++H
Sbjct: 125 LASYAVQARHGDHNPAVHG-PGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEH 179
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 131 bits (331), Expect = 1e-37
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 66 LTLGYKVKHRPRPPKI-----PHRYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECG 120
L ++ K P + LF LQ+K + ++C TA L+ASY VQ++ G
Sbjct: 73 LLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYG 132
Query: 121 DYVSEDYPDHTYLSSYKFVPNQT--------PELERRIMENHKKHAGQSPAAADLNLLET 172
D+ E + YL+ K +P + + E RI H++H G A L L+
Sbjct: 133 DFNKEVHKSG-YLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKI 191
Query: 173 ARRCELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN 213
A+ E+YGV K+ L L V +G+ +++ ++
Sbjct: 192 AQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLT 232
Score = 46.5 bits (110), Expect = 2e-06
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT--------PELERRIMENHKKH 48
+ASY VQ++ GD+ E + YL+ K +P + + E RI H++H
Sbjct: 122 LASYAVQSKYGDFNKEVHKSG-YLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEH 176
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 110 bits (275), Expect = 3e-29
Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 22/149 (14%)
Query: 84 RYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYK---FVP 140
+ + + +L +G + +AS ++Q G+Y S+ +L+ VP
Sbjct: 114 ILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKK-HKQGFLNEENLKSIVP 172
Query: 141 -----NQTPELERRIMENHKKHAGQSPAAADLNL-----LETARRCELYGVKLHPA---- 186
++ P RI+ +K + + +++ L+ YG
Sbjct: 173 VTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFT 232
Query: 187 ----KDHDNILLNLSVAHMGILVFQNQTK 211
+H I + + V G+ + +TK
Sbjct: 233 KASPSNHKVIPVYVGVNIKGLHLLNMETK 261
Score = 47.3 bits (112), Expect = 9e-07
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYK---FVP-----NQTPELERRIMENHKKHALHC 52
+AS ++Q G+Y S+ +L+ VP ++ P RI+ +K +
Sbjct: 140 LASLLLQIVYGNYESKK-HKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSE 198
Query: 53 TCNENTAASDGLLLTL 68
++ + L
Sbjct: 199 GVSKEMHHLQRMFLQN 214
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 69.6 bits (169), Expect = 4e-14
Identities = 21/165 (12%), Positives = 39/165 (23%), Gaps = 37/165 (22%)
Query: 84 RYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSE------------------ 125
Q + G E ++A+ +Q GDY
Sbjct: 321 FAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKAR 380
Query: 126 -------DYPDHTYLSSYKFVPNQ---------TPELERRIMENHKKHAGQSPAAADLNL 169
+ K Q I++ +K G + A
Sbjct: 381 ISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKY 440
Query: 170 LETARRCELYGVKLHPAKDHD---NILLNLSVAHMGILVFQNQTK 211
+ + YG L + + L L V+ + V++
Sbjct: 441 MALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEG 485
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 59.5 bits (143), Expect = 1e-10
Identities = 18/160 (11%), Positives = 43/160 (26%), Gaps = 22/160 (13%)
Query: 66 LTLGYKVKHRPRPPKI------PHRYLFCLQIKRDLSQG-LLHCNENTAALMASYIVQAE 118
++++ P F Q++ D Q +E A + ++
Sbjct: 110 WRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRF 169
Query: 119 CGDYVSEDYPDHTYLSSY-------KFVPN------QTPELERRIMENHKKHAGQSPAAA 165
D + F P + + + I + +++A
Sbjct: 170 FKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEEC 229
Query: 166 DLNLLETARRCELYGVKLHPAKDHD--NILLNLSVAHMGI 203
+ T + + + NI ++L + GI
Sbjct: 230 VMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGI 269
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 49.9 bits (118), Expect = 2e-07
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 17/147 (11%)
Query: 82 PHRYLFCLQIKRDLSQGLL-HCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSY---- 136
P F Q+K D + ++ A + ++ G+ +
Sbjct: 112 PTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDV 171
Query: 137 ---KFVP------NQTPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPAK 187
+F P + L + I + ++ A + + L E + +
Sbjct: 172 GLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCA 231
Query: 188 DHD--NILLNLSV-AHMGILVFQNQTK 211
I + L++ GI ++
Sbjct: 232 LGSSWIISVELAIGPEEGISYLTDKGA 258
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 31/165 (18%)
Query: 5 IVQAECGDY--VSEDYPDHTY-----LSSYKFVPNQTPELERRIMENHKKHALHCTCNEN 57
+V + Y V + + T K L R I++++ + +
Sbjct: 407 VVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 58 TAASDGLLLT-LGY---KVKHRPRPPKIPHRYL---FCLQIKRDLSQGLLHCNE-----N 105
D + +G+ ++H R +L F +++ + N N
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---LEQKIRHDSTAWNASGSILN 522
Query: 106 TAALMASYIVQAECGDYVSEDYPD-HTYLSSY-KFVPNQTPELER 148
T + Y Y+ ++ P +++ F+P L
Sbjct: 523 TLQQLKFY------KPYICDNDPKYERLVNAILDFLPKIEENLIC 561
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.21
Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 58/193 (30%)
Query: 36 ELERRIMENHKKHALHCTC---NENTAASDGLLLTLGYKVKHR-PRPPKIPHRYLFCLQI 91
E E +E + HAL N+ T L+ + RP
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN------- 142
Query: 92 KRDLSQGLL-HCNENTAALMASYIV---QAECGDYVSEDYPD---HTYLSSYKFVPNQTP 144
S L E A L+A + Q G+ ++DY + Y +Y
Sbjct: 143 ----S-ALFRAVGEGNAQLVA---IFGGQ---GN--TDDYFEELRDLY-QTYH------V 182
Query: 145 ELERRIMENHKKHAGQSPAAADL-NLLETARRCE-LY--GVKL-----HPAKDHD-NILL 194
+ I +A L L+ T E ++ G+ + +P+ D + LL
Sbjct: 183 LVGDLI----------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 195 NLSVAHMGILVFQ 207
++ ++ I V Q
Sbjct: 233 SIPISCPLIGVIQ 245
Score = 30.4 bits (68), Expect = 0.45
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 71 KVKHRPRPPKIPHRYL 86
++ R K +R+L
Sbjct: 406 RIPFSERKLKFSNRFL 421
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 1.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 102 CNENTAALMASY----IVQAECGDYVSEDYPDH 130
C ++ + +V A CG +S+ D
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGLVLSDKLVDT 59
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic
homolog RAF kinase inhibitor protein (RKIP). csgid
structural genomics; 1.25A {Chlamydia trachomatis}
Length = 153
Score = 26.9 bits (60), Expect = 3.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 76 PRPPKIPHRYLFCL 89
P PP HRY F
Sbjct: 101 PCPPDAKHRYYFYA 114
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 27.0 bits (60), Expect = 4.1
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 134 SSYKFVPNQTPELERRIMENHKKHAGQSPAAADLNLLETARRCELYGVKLHPA 186
+ + P+ E+ + E + P L A + +KL P
Sbjct: 84 AEFIVSPHLDEEISQFCKEKGVFYM---PGVMTPTELVKAMKLGHTILKLFPG 133
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown
function, PSI-2, protein structure initiative; HET: MSE
ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Length = 257
Score = 26.0 bits (58), Expect = 8.4
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 106 TAALMASYIVQAECGDYVSEDYPDH 130
TA L+A + Y + H
Sbjct: 230 TAGLVACQWIHTLQACYRIGEGHHH 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 8.6
Identities = 4/14 (28%), Positives = 7/14 (50%), Gaps = 1/14 (7%)
Query: 25 SSYK-FVPNQTPEL 37
+S K + + P L
Sbjct: 27 ASLKLYADDSAPAL 40
Score = 25.7 bits (55), Expect = 8.6
Identities = 4/14 (28%), Positives = 7/14 (50%), Gaps = 1/14 (7%)
Query: 134 SSYK-FVPNQTPEL 146
+S K + + P L
Sbjct: 27 ASLKLYADDSAPAL 40
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer,
structural genomics, PSI, prote structure initiative;
HET: MSE; 2.59A {Helicobacter pylori}
Length = 207
Score = 25.7 bits (56), Expect = 9.7
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 76 PRPPKIPHRYLFCL 89
P PP H YL +
Sbjct: 149 PMPPNGDHHYLIQV 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,172,803
Number of extensions: 173761
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 33
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)