RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16878
(213 letters)
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 99.6 bits (248), Expect = 6e-28
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 84 RYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT 143
RY CLQ+++D+ G L C+ T AL+ SY +Q+E GDY E + Y+S +K PNQT
Sbjct: 12 RYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELH-GVDYVSDFKLAPNQT 70
Query: 144 PELERRIMENHKKHAGQSPAAADLNLLETARRCELY 179
ELE ++ME HK + +PA ADL LE A++ +Y
Sbjct: 71 KELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106
Score = 48.7 bits (116), Expect = 1e-08
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTPELERRIMENHKKH 48
+ SY +Q+E GDY E + Y+S +K PNQT ELE ++ME HK +
Sbjct: 38 LGSYTIQSELGDYDPELH-GVDYVSDFKLAPNQTKELEEKVMELHKSY 84
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 98.4 bits (245), Expect = 2e-27
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 84 RYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT 143
++LF LQ+K+ + ++C + L+ASY VQA+ GDY + +L+ + +P +
Sbjct: 12 QHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVH-KRGFLAQEELLPKRV 70
Query: 144 P--------ELERRIMENHKKHAGQSPAAADLNLLETARR 175
E RI + +H G++ A++ L+ A+
Sbjct: 71 INLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQD 110
Score = 45.2 bits (107), Expect = 3e-07
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTP--------ELERRIMENHKKH 48
+ASY VQA+ GDY + +L+ + +P + E RI + +H
Sbjct: 38 LASYAVQAKYGDYDPSVH-KRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEH 92
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 94.2 bits (234), Expect = 1e-25
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 84 RYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQT 143
+ LF LQ+K + ++C TA L+ASY VQ++ GD+ E + YL+ K +P +
Sbjct: 12 QRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH-KSGYLAGDKLLPQRV 70
Query: 144 P--------ELERRIMENHKKHAGQSPAAADLNLLETARR 175
+ E RI H++H G A L L+ A+
Sbjct: 71 LEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQD 110
Score = 43.0 bits (101), Expect = 2e-06
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQTP--------ELERRIMENHKKH 48
+ASY VQ++ GD+ E + YL+ K +P + + E RI H++H
Sbjct: 38 LASYAVQSKYGDFNKEVH-KSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEH 92
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 93.4 bits (232), Expect = 2e-25
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 84 RYLFCLQIKRDLSQGLLHCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ- 142
L +Q + D+ G + + A A Y Q + G + + + +L F+P +
Sbjct: 18 LNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPG-FLELKDFLPKEY 76
Query: 143 -TPELERRIMENHKKHAGQSPAAADLNLLETARRCELY 179
+ ER+I HK S A + ++ AR + Y
Sbjct: 77 IKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114
Score = 42.6 bits (100), Expect = 3e-06
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSYKFVPNQ--TPELERRIMENHKKH 48
A Y Q + G + + + +L F+P + + ER+I HK
Sbjct: 44 FAGYQCQIQFGPHNEQKHKPG-FLELKDFLPKEYIKQKGERKIFMAHKNC 92
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 67.4 bits (164), Expect = 3e-15
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 14/110 (12%)
Query: 84 RYLFCLQIKRDLSQGLL-HCNENTAALMASYIVQAECGDYVSEDYPDHTYLSSY------ 136
F Q+K D + ++ A + ++ G+ +
Sbjct: 14 LNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGL 73
Query: 137 -KFVPNQ------TPELERRIMENHKKHAGQSPAAADLNLLETARRCELY 179
+F P L + I + ++ A + + L E +
Sbjct: 74 RRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRF 123
Score = 28.9 bits (64), Expect = 0.20
Identities = 6/62 (9%), Positives = 16/62 (25%), Gaps = 13/62 (20%)
Query: 1 MASYIVQAECGDYVSEDYPDHTYLSSY-------KFVPNQ------TPELERRIMENHKK 47
+ ++ G+ + +F P L + I + ++
Sbjct: 41 LGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQ 100
Query: 48 HA 49
A
Sbjct: 101 FA 102
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 52.1 bits (125), Expect = 6e-10
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 177 ELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN 213
E+YGV K+ L L V +G+ +++ ++
Sbjct: 1 EMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLT 37
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 51.8 bits (124), Expect = 8e-10
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 177 ELYGVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN 213
E+YGV ++ L L V +G+ ++ + ++
Sbjct: 1 EMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLT 37
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 47.9 bits (114), Expect = 2e-08
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 180 GVKLHPAKDHDNILLNLSVAHMGILVFQNQTKIN 213
GV LH AKD + + + L V G+LV++++ +IN
Sbjct: 1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRIN 34
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus
thermophilus [TaxId: 274]}
Length = 298
Score = 30.6 bits (68), Expect = 0.10
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 6/81 (7%)
Query: 110 MASYIVQAECGDYVSEDYPDH---TYLSSYKFVPNQT-PELERRIMENHKKHAGQSPAAA 165
+ + V P L + + + +T + + + N + P
Sbjct: 208 YVGFNIPGGTYKGVDVTTPTVAVQAMLIASERLSEETVYKFMKAVFGNLEAFKKIHPNLE 267
Query: 166 DLNLLETARRCELYGVKLHPA 186
LE A + + LHP
Sbjct: 268 RFFGLEKAV--KGLPIPLHPG 286
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 25.7 bits (55), Expect = 4.8
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 36 ELERRIMENHKKHALHCTCNENTAASDGLLLTLGY-----KVKHRPRPPKIPHRYLFCLQ 90
E R+ ++ + ++ +E + ++ + L + + H P P + R
Sbjct: 241 EGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNL 300
Query: 91 IKRDL 95
IK L
Sbjct: 301 IKEKL 305
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 23.6 bits (51), Expect = 6.9
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 138 FVPNQTPELERRIMENHKKHAGQSPA-AADLNLLET 172
F Q LE+ H AA ++L E
Sbjct: 8 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEA 43
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency
virus [TaxId: 11723]}
Length = 114
Score = 24.2 bits (53), Expect = 7.1
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 164 AADLNLLETARRCELYGVKLHPA 186
+LLE C+ L P
Sbjct: 40 GLAESLLENKEGCQKILSVLAPL 62
>d1y5ia1 b.52.2.2 (A:1075-1244) Respiratory nitrate reductase 1
alpha chain {Escherichia coli [TaxId: 562]}
Length = 170
Score = 24.2 bits (52), Expect = 10.0
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 31 PNQTPELERRIMENHKKHALHCTCNENTAASDGLLLTLGYKVKHRPRPP 79
N E + H+K +H T ++N +LTL R P
Sbjct: 4 SNGNQEKALNFLTPHQKWGIHSTYSDNLL-----MLTL-----GRGGPV 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 777,881
Number of extensions: 33836
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 19
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)