BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16880
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSI 54
+G ++ T ++S+VR ++F T+ S DD ++ +WN N +L S+VR +
Sbjct: 456 NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 514
Query: 55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
+F +T+ S DD ++ +WN N +L
Sbjct: 515 AFSPDGQTIASASDDKTVKLWNRNGQLL 542
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSI 54
+G ++ T ++S+VR ++F T+ S DD ++ +WN N +L S+V +
Sbjct: 374 NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 432
Query: 55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
+F +T+ S DD ++ +WN N +L
Sbjct: 433 AFSPDDQTIASASDDKTVKLWNRNGQLL 460
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSI 54
+G ++ T ++S+VR ++F T+ S DD ++ +WN N +L S+V +
Sbjct: 87 NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 145
Query: 55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
+F +T+ S DD ++ +WN N +L
Sbjct: 146 AFSPDGQTIASASDDKTVKLWNRNGQLL 173
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSI 54
+G ++ T ++S+V ++F T+ S DD ++ +WN N +L S+VR +
Sbjct: 169 NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 227
Query: 55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
+F +T+ S DD ++ +WN N +L
Sbjct: 228 AFSPDGQTIASASDDKTVKLWNRNGQLL 255
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSI 54
+G ++ T ++S+VR ++F T+ S DD ++ +WN N +L S+V +
Sbjct: 210 NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGV 268
Query: 55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
+F +T+ S DD ++ +WN N +L
Sbjct: 269 AFRPDGQTIASASDDKTVKLWNRNGQLL 296
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSISFCSKQRT 62
+ +++S+VR ++F T+ S DD ++ +WN N +L S+V ++F +T
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 63 LISGGDDGSICMWNLNSKLC 82
+ S DD ++ +WN N +L
Sbjct: 72 IASASDDKTVKLWNRNGQLL 91
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSISFCSKQRTLISGG 67
S+V ++F T+ S DD ++ +WN N +L S+VR ++F +T+ S
Sbjct: 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Query: 68 DDGSICMWNLNSKLC 82
DD ++ +WN N +L
Sbjct: 405 DDKTVKLWNRNGQLL 419
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSI 54
+G ++ T ++S+V ++F T+ S DD ++ +WN N + S+V +
Sbjct: 292 NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGV 350
Query: 55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
+F +T+ S DD ++ +WN N +L
Sbjct: 351 AFSPDGQTIASASDDKTVKLWNRNGQLL 378
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 28 LISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
L+SG D +I MW++++ +C D+ VR + F S + ++S DD ++ +W+ +K
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 81 LC 82
C
Sbjct: 371 RC 372
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSI 54
G + T V +N VR + F S ++S DD ++ +W+ +K C + V S+
Sbjct: 328 GMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 55 SFCSKQRTLISGGDDGSICMW 75
F +++G D ++ +W
Sbjct: 387 DFHKTAPYVVTGSVDQTVKVW 407
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSA-------VRSISFCSKQR 61
+H ++ V S+S ++S D +I MW + + C VR +
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 62 TLISGGDDGSICMWNLNSKLC 82
+ S +D ++ +W + +K C
Sbjct: 248 LIASCSNDQTVRVWVVATKEC 268
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS--KLCD-----SAVRSISFCSKQR 61
+ + VR+ F ++++ +I G DD I ++N N+ K+ D +RSI+ +
Sbjct: 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110
Query: 62 TLISGGDDGSICMWN 76
++SG DD ++ +WN
Sbjct: 111 YVLSGSDDLTVKLWN 125
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 28 LISGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTL---ISGGDDGSICMWN 76
+I+ DD +I +W+ +K C + + ++SF TL ISG +DG++ +WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 11 SNNS-AVRSISFCSKQHTLISGGDDGSICMWNLNSKL-------CDSAVRSISFCSKQRT 62
SN S V+ I F + +++ G + +WN +++ ++ VR+ F +++
Sbjct: 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 63 LISGGDDGSICMWNLNS 79
+I G DD I ++N N+
Sbjct: 70 IIVGSDDFRIRVFNYNT 86
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQ-RTLISG 66
+RSI+ + ++SG DD ++ +WN + + V ++F K T SG
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 67 GDDGSICMWNL 77
D ++ +W+L
Sbjct: 160 CLDRTVKVWSL 170
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 8 FVHSNNSAVRSIS-FCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSK 59
FV + N R I+ + ++SG D +I +W++ C + VR I F +K
Sbjct: 288 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 347
Query: 60 QRTLISGGDDGSICMWNLNSKLCDR 84
+ ++SG DG I +W+L + L R
Sbjct: 348 R--IVSGAYDGKIKVWDLVAALDPR 370
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 26 HTLISGGDDGSICMWNLNSKLCDSAVRS-----ISFCSKQRTLISGGDDGSICMWNLNS 79
++SG D +I +W+ N+ C + + +R +I+G D ++ +W++N+
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNS----KLCDSAVRSIS-FCSKQRTLISG 66
+ +AV + F K ++S D +I +WN ++ + + R I+ + R ++SG
Sbjct: 255 HRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSG 312
Query: 67 GDDGSICMWNLNSKLCDR 84
D +I +W++ C R
Sbjct: 313 SSDNTIRLWDIECGACLR 330
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS--KLCD-----SAVRSISFCSKQR 61
+ + VR+ F ++++ +I G DD I ++N N+ K+ D +RSI+ +
Sbjct: 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110
Query: 62 TLISGGDDGSICMWN 76
++SG DD ++ +WN
Sbjct: 111 YVLSGSDDLTVKLWN 125
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 28 LISGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTL---ISGGDDGSICMWN 76
+I+ DD +I +W+ +K C + + ++SF TL ISG +DG++ +WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 11 SNNS-AVRSISFCSKQHTLISGGDDGSICMWNLNSKL-------CDSAVRSISFCSKQRT 62
SN S V+ I F + +++ G + +WN +++ ++ VR+ F +++
Sbjct: 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 63 LISGGDDGSICMWNLNS 79
+I G DD I ++N N+
Sbjct: 70 IIVGSDDFRIRVFNYNT 86
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQ-RTLISG 66
+RSI+ + ++SG DD ++ +WN + + V ++F K T SG
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 67 GDDGSICMWNL 77
D ++ +W+L
Sbjct: 160 CLDRTVKVWSL 170
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS--KLCD-----SAVRSISFCSKQR 61
+ + VR+ F ++++ +I G DD I ++N N+ K+ D +RSI+ +
Sbjct: 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110
Query: 62 TLISGGDDGSICMWN 76
++SG DD ++ +WN
Sbjct: 111 YVLSGSDDLTVKLWN 125
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 28 LISGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTL---ISGGDDGSICMWN 76
+I+ DD +I +W+ +K C + + ++SF TL ISG +DG++ +WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 11 SNNS-AVRSISFCSKQHTLISGGDDGSICMWNLNSKL-------CDSAVRSISFCSKQRT 62
SN S V+ I F + +++ G + +WN +++ ++ VR+ F +++
Sbjct: 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 63 LISGGDDGSICMWNLNS 79
+I G DD I ++N N+
Sbjct: 70 IIVGSDDFRIRVFNYNT 86
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQ-RTLISG 66
+RSI+ + ++SG DD ++ +WN + + V ++F K T SG
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 67 GDDGSICMWNL 77
D ++ +W+L
Sbjct: 160 CLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS--KLCD-----SAVRSISFCSKQR 61
+ + VR+ F ++++ +I G DD I ++N N+ K+ D +RSI+ +
Sbjct: 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110
Query: 62 TLISGGDDGSICMWN 76
++SG DD ++ +WN
Sbjct: 111 YVLSGSDDLTVKLWN 125
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 28 LISGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTL---ISGGDDGSICMWN 76
+I+ DD +I +W+ +K C + + ++SF TL ISG +DG++ +WN
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 11 SNNS-AVRSISFCSKQHTLISGGDDGSICMWNLNSKL-------CDSAVRSISFCSKQRT 62
SN S V+ I F + +++ G + +WN +++ ++ VR+ F +++
Sbjct: 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 63 LISGGDDGSICMWNLNS 79
+I G DD I ++N N+
Sbjct: 70 IIVGSDDFRIRVFNYNT 86
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQ-RTLISG 66
+RSI+ + ++SG DD ++ +WN + + V ++F K T SG
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 67 GDDGSICMWNL 77
D ++ +W+L
Sbjct: 160 CLDRTVKVWSL 170
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 27 TLISGGDDGSICMWNLNSKLCD-------SAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
T+IS G+D + WNLN + S + +++ + S G DG I +WNL +
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 80 K 80
K
Sbjct: 228 K 228
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQR 61
G FV + S V S+ K +ISG D +I +W + + + + + S+ R
Sbjct: 97 GETYQRFV-GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 62 ------------TLISGGDDGSICMWNLN 78
T+IS G+D + WNLN
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
+NS + +++ + S G DG I +WNL +K
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRT 62
+ ++ V+++S S +SGG D S+ +W+L+ K S V ++ C + T
Sbjct: 136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195
Query: 63 L-ISGGDDGSICMWN 76
+ +S G+DG I +W+
Sbjct: 196 IFLSCGEDGRILLWD 210
Score = 28.9 bits (63), Expect = 0.76, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRT 62
+ V +++ S++ L++ D G++ +W + K D V+++S S
Sbjct: 95 AGVTDVAWVSEKGILVAS-DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ 153
Query: 63 LISGGDDGSICMWNLNSK 80
+SGG D S+ +W+L+ K
Sbjct: 154 AVSGGKDFSVKVWDLSQK 171
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 11 SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLI 64
+ V I F + + TLIS DD I +WN C V+ R L+
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR-LL 1065
Query: 65 SGGDDGSICMWNL 77
S DG++ +WN+
Sbjct: 1066 SWSFDGTVKVWNI 1078
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 31 GGDDGSICMWNL-NSKLCDS------AVRSISFCSKQRTLISGGDDGSICMWN 76
G ++G+I + L N+++ S V I F + ++TLIS DD I +WN
Sbjct: 985 GDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLI--SGGDDGSICMWNLNSKLC-------DSAVR 52
G ++HT+ ++ V F + H L+ +G D + +W+LN K C ++V
Sbjct: 695 GELVHTY-DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVN 753
Query: 53 SISFCSKQRTLISGGDDGSICMWNLNS 79
F + L S DG++ +W+ S
Sbjct: 754 HCRFSPDDKLLASCSADGTLKLWDATS 780
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNS----KLCDSA-----------VRSISF 56
+N VR +F L +G D+G I +WN+++ LC V + F
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCF 1191
Query: 57 CSKQRTLISGGDDGSICMWNL 77
+ LIS G G I WN+
Sbjct: 1192 SPDGKMLISAG--GYIKWWNV 1210
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 27 TLISGGDDGSICMWNLNSKLCD-------SAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
T+IS G+D + WNLN + S + +++ + S G DG I +WNL +
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 80 K 80
K
Sbjct: 222 K 222
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQR 61
G FV + S V S+ K +ISG D +I +W + + + + + S+ R
Sbjct: 91 GETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 149
Query: 62 ------------TLISGGDDGSICMWNLN 78
T+IS G+D + WNLN
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
+NS + +++ + S G DG I +WNL +K
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 27 TLISGGDDGSICMWNLNSKLCD-------SAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
T+IS G+D + WNLN + S + +++ + S G DG I +WNL +
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 80 K 80
K
Sbjct: 228 K 228
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQR 61
G FV + S V S+ K +ISG D +I +W + + + + + S+ R
Sbjct: 97 GETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 62 ------------TLISGGDDGSICMWNLN 78
T+IS G+D + WNLN
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
+NS + +++ + S G DG I +WNL +K
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 27 TLISGGDDGSICMWNLNSKLCD-------SAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
T+IS G+D + WNLN + S + +++ + S G DG I +WNL +
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 80 K 80
K
Sbjct: 228 K 228
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQR 61
G FV + S V S+ K +ISG D +I +W + + + + + S+ R
Sbjct: 97 GETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 62 ------------TLISGGDDGSICMWNLN 78
T+IS G+D + WNLN
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
+NS + +++ + S G DG I +WNL +K
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 27 TLISGGDDGSICMWNLNSKLCD-------SAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
T+IS G+D + WNLN + S + +++ + S G DG I +WNL +
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 80 K 80
K
Sbjct: 228 K 228
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQR 61
G FV + S V S+ K +ISG D +I +W + + + + + S+ R
Sbjct: 97 GETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 62 ------------TLISGGDDGSICMWNLN 78
T+IS G+D + WNLN
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
+NS + +++ + S G DG I +WNL +K
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 27 TLISGGDDGSICMWNLNSKLCD-------SAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
T+IS G+D + WNLN + S + +++ + S G DG I +WNL +
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 80 K 80
K
Sbjct: 228 K 228
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQR 61
G FV + S V S+ K +ISG D +I +W + + + + + S+ R
Sbjct: 97 GETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 62 ------------TLISGGDDGSICMWNLN 78
T+IS G+D + WNLN
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
+NS + +++ + S G DG I +WNL +K
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSA-------VRSISFCSKQRTLISGGD 68
V ++ + + +S D S+ +WNL + C V S++F R ++SGG
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 69 DGSICMWNLNSK 80
D ++ +WN+ +
Sbjct: 130 DNALRVWNVKGE 141
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNS------KLCDSAVRSISFCSKQRTLIS 65
+ AVR I F + TLIS +D I +WN + + V+ R L+S
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLS 1060
Query: 66 GGDDGSICMWNLNSKLCDR 84
DG++ +WN+ + +R
Sbjct: 1061 WSFDGTVKVWNVITGRIER 1079
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 31 GGDDGSICMWNL-NSKLCDS------AVRSISFCSKQRTLISGGDDGSICMWN 76
G +DG+I + L N+++ S AVR I F + +TLIS +D I +WN
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLI--SGGDDGSICMWNLNSKLC-------DSAVR 52
G ++HT+ ++ V F +K + L+ +G +D + +W+LN K C ++V
Sbjct: 689 GKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747
Query: 53 SISFCSKQRTLISGGDDGSICMWNLNS 79
F L S DG++ +W++ S
Sbjct: 748 HCRFSPDDELLASCSADGTLRLWDVRS 774
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNS------KLCDSAVRSISFCSKQRTLIS 65
+ AVR I F + TLIS +D I +WN + + V+ R L+S
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLS 1067
Query: 66 GGDDGSICMWNLNSKLCDR 84
DG++ +WN+ + +R
Sbjct: 1068 WSFDGTVKVWNVITGRIER 1086
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 31 GGDDGSICMWNL-NSKLCDS------AVRSISFCSKQRTLISGGDDGSICMWN 76
G +DG+I + L N+++ S AVR I F + +TLIS +D I +WN
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLI--SGGDDGSICMWNLNSKLC-------DSAVR 52
G ++HT+ ++ V F +K + L+ +G +D + +W+LN K C ++V
Sbjct: 696 GKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 754
Query: 53 SISFCSKQRTLISGGDDGSICMWNLNS 79
F L S DG++ +W++ S
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWDVRS 781
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + +C
Sbjct: 131 DESVRIWDVKTGMC 144
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D + +W+ N K C
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 244 FANFSVT---GGKWIVSGSEDNMVYIWNLQTK 272
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 29 ISGGDDGSICMWNLNSKLCDSA-------VRSISFCSKQRTLISGGDDGSICMWN 76
+SG DG++ +W+L + V S++F S R ++SG D +I +WN
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 29 ISGGDDGSICMWNLNSKLCDSA-------VRSISFCSKQRTLISGGDDGSICMWN 76
+SG DG++ +W+L + V S++F S R ++SG D +I +WN
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + +C
Sbjct: 131 DESVRIWDVKTGMC 144
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 244 FANFSVT---GGKWIVSGSEDNMVYIWNLQTK 272
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNL-NSKLC------DSAVRSISFCSKQRTLISGGD 68
+RS+ F L +G +D I +W++ N K+ + + S+ + L+SG
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 69 DGSICMWNLNSKLC 82
D ++ +W+L + C
Sbjct: 186 DRTVRIWDLRTGQC 199
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNL------------NSKLCDSA-------VRSIS 55
+V S+ F +++SG D S+ +WNL NS C+ V S++
Sbjct: 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317
Query: 56 FCSKQRTLISGGDDGSICMWNLNS 79
++SG D + W+ S
Sbjct: 318 TTQNDEYILSGSKDRGVLFWDKKS 341
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMW-----NLNSKLCDSA--VRSI 54
G ++HT + + +RS++F L++ DDG I ++ NL L A V ++
Sbjct: 196 GKLLHT-LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
Query: 55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
+FC +S D S+ +W++ ++ C
Sbjct: 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTC 282
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 28 LISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD---DGSICMWN 76
L SGG+D + +W+ S + ++AV+++++C Q L++ G D I WN
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Query: 11 SNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLN 43
+++S+V+++ F +KQ + L SGG++G I +W++N
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 49 SAVRSISFCSKQ-RTLISGGDDGSICMWNLN 78
S+V+++ F +KQ L SGG++G I +W++N
Sbjct: 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 5 IHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNS 44
+ T + + S+ +C + +H L+S G D ++ +WN S
Sbjct: 254 LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 24 KQHTLISGGDDGSICMWNLNS--------KLCDSAVRSISF-CSKQRTLISGGDDGSICM 74
+QH + +GG DG + +W++ K ++ + + F S L + +DGS+
Sbjct: 248 QQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWH 307
Query: 75 WNLNSKLCDR 84
W+ ++ + ++
Sbjct: 308 WDASTDVPEK 317
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 152 DESVRIWDVKTGKC 165
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 265 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 293
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 134 DESVRIWDVKTGKC 147
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 247 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 275
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 128 DESVRIWDVKTGKC 141
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 241 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 269
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 145 DESVRIWDVKTGKC 158
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 258 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 286
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 150 DESVRIWDVKTGKC 163
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 263 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 291
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 124 DESVRIWDVKTGKC 137
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 237 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 265
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 128 DESVRIWDVKTGKC 141
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 241 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 269
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 129 DESVRIWDVKTGKC 142
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 242 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 270
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 131 DESVRIWDVKTGKC 144
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 244 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 272
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 134 DESVRIWDVKTGKC 147
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 247 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 275
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGG 67
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 68 DDGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 130 FDESVRIWDVKTGKC 144
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 244 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 272
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 134 DESVRIWDVKTGKC 147
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 247 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 275
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGG 67
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 68 DDGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 130 FDESVRIWDVKTGKC 144
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 244 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 272
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 127 DESVRIWDVKTGKC 140
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 240 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 268
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSIS-------FCSKQRTLISGGD 68
+ +++ S + L+S DD ++ +W+++S C ++ S F + ++SG
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 69 DGSICMWNLNSKLC 82
D S+ +W++ + C
Sbjct: 133 DESVRIWDVKTGKC 146
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL-------------NSKLCD 48
G + T + +N V + F +++ D ++ +W+ N K C
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
A S++ + ++SG +D + +WNL +K
Sbjct: 246 FANFSVT---GGKWIVSGSEDNLVYIWNLQTK 274
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 24 KQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSIC 73
K + L+SG D ++ +W++ + C SAV + F + +I+ DDG++
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVK 385
Query: 74 MWNLNS 79
+W+L +
Sbjct: 386 LWDLKT 391
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 28 LISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
+ISG D ++ +WN + C S VR + K+ ++SG D ++ +W++ +
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETG 229
Query: 81 LC 82
C
Sbjct: 230 QC 231
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 50 AVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
V SI F + + L + G DG I WNL ++
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
V SI F + L + G DG I WNL ++
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 50 AVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
V SI F + + L + G DG I WNL ++
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
V SI F + L + G DG I WNL ++
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 50 AVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
V SI F + + L + G DG I WNL ++
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
V SI F + L + G DG I WNL ++
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 50 AVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
V SI F + + L + G DG I WNL ++
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
V SI F + L + G DG I WNL ++
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQ--HTLISGGDDGSICMWNLNSKLC-------DSAVR 52
G ++ +F H + + V + + +T +SGG D +W++ S C +S V
Sbjct: 186 GQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN 244
Query: 53 SISFCSKQRTLISGGDDGSICMWNLNS 79
S+ + SG DD + +++L +
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRA 271
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 28.9 bits (63), Expect = 0.67, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 30 SGGDDGSICMWNL--NSKL----CDSAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
SGG DG + +W+L KL +S + ++ F S R + + I +W+L SK
Sbjct: 578 SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF-SPNRYWLCAATEHGIKIWDLESK 633
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 2 GSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKL------------CD 48
G +I T + + +++ S + + LI+G D G I +WNL + C
Sbjct: 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCS 111
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLN 78
S V I+ DG I + +N
Sbjct: 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVN 141
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 5 IHTFVHSNNSAVRSISFCSKQHTLISGG---DDGSICMWNLNSKLCDSAVR------SIS 55
+ TF + AV+++++C Q +++ G D I +WN+ S C SAV SI
Sbjct: 280 LQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 338
Query: 56 FCSKQRTLISG 66
+ + LISG
Sbjct: 339 WSPHYKELISG 349
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 12 NNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD-----------SAVRSISFCSKQ 60
+ + V +S+ L +G D S+ +WN+N K D S+V S+ + + +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNSVIWLN-E 592
Query: 61 RTLISGGDDGSICMWNL 77
T++S G D +I WN+
Sbjct: 593 TTIVSAGQDSNIKFWNV 609
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 5 IHTFVHSNNSAVRSISFCSKQHTLISGG---DDGSICMWNLNSKLCDSAVR------SIS 55
+ TF + AV+++++C Q +++ G D I +WN+ S C SAV SI
Sbjct: 269 LQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327
Query: 56 FCSKQRTLISG 66
+ + LISG
Sbjct: 328 WSPHYKELISG 338
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD 68
V S+S +SG D S +W++ +C +S + +I F +G D
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 69 DGSICMWNLNS 79
D + +++L +
Sbjct: 247 DATCRLFDLRA 257
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD 68
V S+S +SG D S +W++ +C +S + +I F +G D
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 69 DGSICMWNLNS 79
D + +++L +
Sbjct: 247 DATCRLFDLRA 257
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD 68
V S+S +SG D S +W++ +C +S + +I F +G D
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 69 DGSICMWNLNS 79
D + +++L +
Sbjct: 247 DATCRLFDLRA 257
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD 68
V S+S +SG D S +W++ +C +S + +I F +G D
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 257
Query: 69 DGSICMWNLNS 79
D + +++L +
Sbjct: 258 DATCRLFDLRA 268
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD 68
V S+S +SG D S +W++ +C +S + +I F +G D
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 69 DGSICMWNLNS 79
D + +++L +
Sbjct: 247 DATCRLFDLRA 257
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 5 IHTFVHSNNSAVRSISFCSKQHTLISGG---DDGSICMWNLNSKLCDSAVR------SIS 55
+ TF + AV+++++C Q +++ G D I +WN+ S C SAV SI
Sbjct: 189 LQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 247
Query: 56 FCSKQRTLISG 66
+ + LISG
Sbjct: 248 WSPHYKELISG 258
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 25 QHTLISGGDDGSICMWNLNSK-------------LCDSAVRSISFCSKQRTLISGGDDGS 71
Q L G G + +W+L + C +A+R SF LI+ DD S
Sbjct: 298 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 357
Query: 72 ICMWN 76
I W+
Sbjct: 358 IWRWD 362
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 25 QHTLISGGDDGSICMWNLNSK-------------LCDSAVRSISFCSKQRTLISGGDDGS 71
Q L G G + +W+L + C +A+R SF LI+ DD S
Sbjct: 294 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 353
Query: 72 ICMWN 76
I W+
Sbjct: 354 IWRWD 358
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 25 QHTLISGGDDGSICMWNLNSK-------------LCDSAVRSISFCSKQRTLISGGDDGS 71
Q L G G + +W+L + C +A+R SF LI+ DD S
Sbjct: 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358
Query: 72 ICMWN 76
I W+
Sbjct: 359 IWRWD 363
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 25 QHTLISGGDDGSICMWNLNSK-------------LCDSAVRSISFCSKQRTLISGGDDGS 71
Q L G G + +W+L + C +A+R SF LI+ DD S
Sbjct: 335 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 394
Query: 72 ICMWN 76
I W+
Sbjct: 395 IWRWD 399
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 25 QHTLISGGDDGSICMWNLNSK-------------LCDSAVRSISFCSKQRTLISGGDDGS 71
Q L G G + +W+L + C +A+R SF LI+ DD S
Sbjct: 298 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 357
Query: 72 ICMWN 76
I W+
Sbjct: 358 IWRWD 362
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 25 QHTLISGGDDGSICMWNLN-------SKLC----DSAVRSISFCSKQRTLISGGDDGSIC 73
+ ++ D G++ +W L+ SK C D V ++S S +SG D I
Sbjct: 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152
Query: 74 MWNLNSKL 81
+W+L ++
Sbjct: 153 VWDLAQQV 160
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 28 LISGGDDGSICMWNLNS 44
L+S DD +IC+W++N+
Sbjct: 197 LLSASDDHTICLWDINA 213
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 63 LISGGDDGSICMWNLNS 79
L+S DD +IC+W++N+
Sbjct: 197 LLSASDDHTICLWDINA 213
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 28 LISGGDDGSICMWNLNS 44
L+S DD +IC+W++N+
Sbjct: 199 LLSASDDHTICLWDINA 215
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 63 LISGGDDGSICMWNLNS 79
L+S DD +IC+W++N+
Sbjct: 199 LLSASDDHTICLWDINA 215
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 8 FVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
F HS S V S+SF TL S G DG + W++ +K
Sbjct: 298 FAHS--SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 333
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
S V S+SF TL S G DG + W++ +K
Sbjct: 302 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 333
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 8 FVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK 45
F HS S V S+SF TL S G DG + W++ +K
Sbjct: 288 FAHS--SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
S V S+SF TL S G DG + W++ +K
Sbjct: 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 28 LISGGDDGSICMWNLNS 44
L+S DD +IC+W++N+
Sbjct: 201 LLSASDDHTICLWDINA 217
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 63 LISGGDDGSICMWNLNS 79
L+S DD +IC+W++N+
Sbjct: 201 LLSASDDHTICLWDINA 217
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 28 LISGGDDGSICMWNLNS 44
L+S DD ++C+W++N+
Sbjct: 195 LLSASDDHTVCLWDINA 211
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 63 LISGGDDGSICMWNLNS 79
L+S DD ++C+W++N+
Sbjct: 195 LLSASDDHTVCLWDINA 211
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 28 LISGGDDGSICMWNLNS 44
L+S DD ++C+W++N+
Sbjct: 195 LLSASDDHTVCLWDINA 211
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 63 LISGGDDGSICMWNLNS 79
L+S DD ++C+W++N+
Sbjct: 195 LLSASDDHTVCLWDINA 211
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 30 SGGDDGSICMWNLNS------KLCDSAVRSISFCSKQRTLISGGDDGSICMWNL 77
S G DG + +WN N K +S V +S + + +GG D + +W++
Sbjct: 189 SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNL-------NSKLCDSAV--RSISFCSKQRTLISG 66
+RS TLI GG+ ++ +W+L ++L SA +++ + S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 67 GDDGSICMWNLNSKLCDR 84
DG+I +W+L+++ R
Sbjct: 160 CSDGNIAVWDLHNQTLVR 177
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMW---NLNSKLC----DSAVRSISFCSKQRTLISGG 67
+ + F L+S DDG++ +W N NS+ C ++ S S+ + +IS
Sbjct: 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCS 307
Query: 68 DDGSICMWNL 77
DGS+ +W+L
Sbjct: 308 MDGSVRLWSL 317
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVR-------SISFCSKQR 61
+ ++ V S+ + +++ ++S DG + +WN + A++ +F +
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 62 TLISGGDDGSICMWNLNSK 80
++ GG D + ++NL+S+
Sbjct: 122 SVACGGLDSACSIFNLSSQ 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,427,475
Number of Sequences: 62578
Number of extensions: 76808
Number of successful extensions: 535
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 249
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)