Query psy16880
Match_columns 84
No_of_seqs 117 out of 1432
Neff 11.8
Searched_HMMs 29240
Date Sat Aug 17 00:29:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h5i_A Guanine nucleotide-exch 99.8 5.4E-19 1.8E-23 97.4 11.4 74 6-80 263-344 (365)
2 3ow8_A WD repeat-containing pr 99.8 1.7E-18 5.9E-23 94.0 11.6 82 1-83 195-283 (321)
3 1got_B GT-beta; complex (GTP-b 99.8 1.5E-17 5.1E-22 90.7 12.4 81 1-82 173-260 (340)
4 2ynn_A Coatomer subunit beta'; 99.8 9.3E-18 3.2E-22 90.4 10.0 80 3-83 4-90 (304)
5 2ymu_A WD-40 repeat protein; u 99.8 1.5E-17 5.1E-22 95.1 11.2 76 3-79 7-88 (577)
6 1vyh_C Platelet-activating fac 99.8 1E-17 3.6E-22 93.3 9.8 82 1-83 139-227 (410)
7 2ynn_A Coatomer subunit beta'; 99.8 2.9E-17 9.8E-22 88.5 11.2 80 1-81 86-174 (304)
8 4aow_A Guanine nucleotide-bind 99.8 6.1E-17 2.1E-21 87.4 12.2 78 4-82 30-120 (340)
9 4aow_A Guanine nucleotide-bind 99.8 3.7E-17 1.3E-21 88.3 10.8 79 2-81 205-339 (340)
10 3vu4_A KMHSV2; beta-propeller 99.7 6.3E-17 2.1E-21 88.9 11.2 75 5-80 188-272 (355)
11 1got_B GT-beta; complex (GTP-b 99.7 1.1E-16 3.7E-21 87.4 11.9 80 2-82 216-304 (340)
12 1nr0_A Actin interacting prote 99.7 8E-17 2.7E-21 93.4 11.8 81 2-83 180-274 (611)
13 4g56_B MGC81050 protein; prote 99.7 3.3E-17 1.1E-21 90.1 9.8 78 2-80 259-344 (357)
14 3ow8_A WD repeat-containing pr 99.7 1.1E-16 3.7E-21 87.0 11.7 76 2-78 238-320 (321)
15 3frx_A Guanine nucleotide-bind 99.7 9.2E-17 3.2E-21 87.0 11.4 77 3-80 56-139 (319)
16 3vl1_A 26S proteasome regulato 99.7 1.1E-16 3.8E-21 88.6 11.9 81 2-83 129-216 (420)
17 4gqb_B Methylosome protein 50; 99.7 4.1E-17 1.4E-21 89.5 9.9 80 1-81 246-333 (344)
18 4ery_A WD repeat-containing pr 99.7 1.5E-16 5.3E-21 85.6 11.9 81 2-83 55-142 (312)
19 4ery_A WD repeat-containing pr 99.7 1.5E-16 5.2E-21 85.6 11.8 80 3-83 14-100 (312)
20 2xzm_R RACK1; ribosome, transl 99.7 1.9E-16 6.3E-21 86.5 12.0 76 3-79 67-149 (343)
21 2hes_X YDR267CP; beta-propelle 99.7 1.6E-16 5.4E-21 86.5 11.1 77 3-80 98-185 (330)
22 2pbi_B Guanine nucleotide-bind 99.7 2.7E-16 9.1E-21 86.3 12.0 81 1-82 229-318 (354)
23 1vyh_C Platelet-activating fac 99.7 9E-17 3.1E-21 89.6 10.1 77 1-78 327-410 (410)
24 2pbi_B Guanine nucleotide-bind 99.7 4.6E-16 1.6E-20 85.4 12.4 81 1-82 185-274 (354)
25 3frx_A Guanine nucleotide-bind 99.7 1.5E-16 5.2E-21 86.2 10.3 79 4-83 9-100 (319)
26 3zwl_B Eukaryotic translation 99.7 4E-16 1.4E-20 84.7 12.0 78 5-83 25-109 (369)
27 4gqb_B Methylosome protein 50; 99.7 4.8E-16 1.7E-20 85.3 12.0 82 1-83 158-250 (344)
28 2ymu_A WD-40 repeat protein; u 99.7 1.2E-16 4.3E-21 91.3 9.7 75 1-76 497-577 (577)
29 3fm0_A Protein CIAO1; WDR39,SG 99.7 1.6E-16 5.5E-21 86.9 9.8 77 3-80 6-93 (345)
30 3iz6_a 40S ribosomal protein R 99.7 1.7E-16 5.7E-21 87.7 9.8 79 3-82 240-332 (380)
31 3iz6_a 40S ribosomal protein R 99.7 9.6E-17 3.3E-21 88.7 8.5 76 3-79 57-139 (380)
32 2xzm_R RACK1; ribosome, transl 99.7 6.3E-16 2.2E-20 84.4 11.5 79 4-83 13-111 (343)
33 1erj_A Transcriptional repress 99.7 8.3E-16 2.8E-20 85.3 12.0 80 2-82 155-241 (393)
34 3fm0_A Protein CIAO1; WDR39,SG 99.7 6.9E-16 2.3E-20 84.4 10.8 78 3-81 96-183 (345)
35 1erj_A Transcriptional repress 99.7 1.2E-15 4.1E-20 84.6 11.7 68 15-82 125-199 (393)
36 2pm7_B Protein transport prote 99.7 1E-15 3.5E-20 82.2 11.0 75 6-81 3-88 (297)
37 3mmy_A MRNA export factor; mRN 99.7 8.1E-16 2.8E-20 83.5 10.6 80 3-83 30-121 (368)
38 4e54_B DNA damage-binding prot 99.7 3.9E-16 1.3E-20 87.4 9.4 74 7-81 114-198 (435)
39 3k26_A Polycomb protein EED; W 99.7 1E-15 3.5E-20 83.2 10.5 80 1-81 104-194 (366)
40 3lrv_A PRE-mRNA-splicing facto 99.7 1.3E-15 4.4E-20 83.1 10.8 78 5-83 117-205 (343)
41 3lrv_A PRE-mRNA-splicing facto 99.7 2.1E-15 7.1E-20 82.3 11.5 80 2-82 159-247 (343)
42 3jrp_A Fusion protein of prote 99.7 2.5E-16 8.5E-21 85.9 7.9 79 2-81 1-90 (379)
43 4gq1_A NUP37; propeller, trans 99.7 9.5E-17 3.2E-21 89.1 6.0 75 7-82 131-221 (393)
44 4e54_B DNA damage-binding prot 99.7 3.1E-16 1E-20 87.9 7.7 80 2-82 240-330 (435)
45 1nr0_A Actin interacting prote 99.7 8.5E-16 2.9E-20 89.2 9.7 79 3-82 138-224 (611)
46 3ei3_B DNA damage-binding prot 99.7 2.4E-15 8.3E-20 82.7 10.9 80 2-82 194-285 (383)
47 2pm7_B Protein transport prote 99.7 2.8E-15 9.6E-20 80.5 10.7 77 3-80 44-133 (297)
48 3f3f_A Nucleoporin SEH1; struc 99.7 1.7E-15 5.7E-20 81.5 9.7 74 6-80 5-91 (351)
49 3mmy_A MRNA export factor; mRN 99.7 3.4E-15 1.1E-19 81.1 10.8 77 6-83 80-164 (368)
50 3gre_A Serine/threonine-protei 99.7 1.7E-15 5.9E-20 84.5 9.6 77 1-78 51-141 (437)
51 3dm0_A Maltose-binding peripla 99.7 3.4E-15 1.2E-19 87.5 11.0 77 3-80 421-504 (694)
52 3mkq_A Coatomer beta'-subunit; 99.6 2.4E-15 8.1E-20 88.8 10.0 80 3-83 4-90 (814)
53 2hes_X YDR267CP; beta-propelle 99.6 1E-14 3.5E-19 79.4 11.5 74 4-78 48-137 (330)
54 2aq5_A Coronin-1A; WD40 repeat 99.6 3.6E-15 1.2E-19 82.7 9.8 80 3-83 122-211 (402)
55 3odt_A Protein DOA1; ubiquitin 99.6 6.5E-15 2.2E-19 78.7 10.6 79 1-82 214-299 (313)
56 3bg1_A Protein SEC13 homolog; 99.6 1.1E-15 3.9E-20 82.7 7.7 73 7-80 8-91 (316)
57 3f3f_A Nucleoporin SEH1; struc 99.6 1E-14 3.5E-19 78.5 11.0 78 4-82 49-146 (351)
58 2aq5_A Coronin-1A; WD40 repeat 99.6 1.1E-14 3.9E-19 80.7 11.4 76 7-83 76-167 (402)
59 4a11_B DNA excision repair pro 99.6 1.4E-14 4.8E-19 79.6 11.4 81 2-83 33-135 (408)
60 4g56_B MGC81050 protein; prote 99.6 1.1E-14 3.7E-19 80.1 10.6 82 1-83 170-262 (357)
61 3bg1_A Protein SEC13 homolog; 99.6 9.3E-15 3.2E-19 79.1 10.1 74 4-78 204-292 (316)
62 4a11_B DNA excision repair pro 99.6 2.8E-14 9.6E-19 78.4 12.0 80 2-82 176-279 (408)
63 3ei3_B DNA damage-binding prot 99.6 1.4E-14 4.8E-19 79.7 10.7 78 3-81 64-152 (383)
64 3odt_A Protein DOA1; ubiquitin 99.6 1.3E-14 4.5E-19 77.5 10.2 76 3-80 9-91 (313)
65 3sfz_A APAF-1, apoptotic pepti 99.6 1E-14 3.6E-19 89.3 10.7 77 6-83 609-692 (1249)
66 4ggc_A P55CDC, cell division c 99.6 2.8E-14 9.6E-19 76.4 11.3 80 1-81 54-183 (318)
67 3dwl_C Actin-related protein 2 99.6 1.4E-15 4.8E-20 83.4 6.3 78 3-81 46-133 (377)
68 3dm0_A Maltose-binding peripla 99.6 2E-14 7E-19 84.3 11.4 78 5-83 375-465 (694)
69 1gxr_A ESG1, transducin-like e 99.6 4.3E-14 1.5E-18 76.1 11.9 80 2-82 173-258 (337)
70 3gre_A Serine/threonine-protei 99.6 2.8E-15 9.7E-20 83.6 7.4 81 2-83 202-296 (437)
71 1sq9_A Antiviral protein SKI8; 99.6 1.9E-14 6.6E-19 79.2 10.3 79 2-81 268-397 (397)
72 2oit_A Nucleoporin 214KDA; NH2 99.6 7.6E-15 2.6E-19 82.7 8.8 73 5-78 142-222 (434)
73 3mkq_A Coatomer beta'-subunit; 99.6 1.5E-14 5.2E-19 85.4 10.4 79 1-80 44-129 (814)
74 3jrp_A Fusion protein of prote 99.6 2E-14 6.7E-19 78.4 9.6 77 3-80 46-135 (379)
75 1gxr_A ESG1, transducin-like e 99.6 8E-14 2.8E-18 75.0 11.9 79 4-83 133-218 (337)
76 1k8k_C P40, ARP2/3 complex 41 99.6 2.3E-14 7.7E-19 78.2 9.7 77 4-81 44-129 (372)
77 3zwl_B Eukaryotic translation 99.6 3.7E-14 1.3E-18 77.0 10.5 79 1-80 63-152 (369)
78 4gga_A P55CDC, cell division c 99.6 4.3E-14 1.5E-18 78.9 11.0 78 2-81 311-397 (420)
79 1pgu_A Actin interacting prote 99.6 2.6E-14 9E-19 82.0 10.1 76 2-79 520-614 (615)
80 4h5i_A Guanine nucleotide-exch 99.6 4.6E-14 1.6E-18 77.9 10.7 36 48-83 269-304 (365)
81 3k26_A Polycomb protein EED; W 99.6 3.4E-14 1.2E-18 77.2 10.1 71 13-83 69-151 (366)
82 3sfz_A APAF-1, apoptotic pepti 99.6 6E-14 2.1E-18 86.0 12.0 82 1-83 646-736 (1249)
83 1pgu_A Actin interacting prote 99.6 7.4E-14 2.5E-18 80.2 11.7 81 2-83 150-242 (615)
84 1yfq_A Cell cycle arrest prote 99.6 2.4E-14 8.3E-19 77.4 9.0 75 6-81 5-91 (342)
85 2vdu_B TRNA (guanine-N(7)-)-me 99.6 1.6E-14 5.3E-19 81.2 8.4 75 7-83 190-275 (450)
86 3v7d_B Cell division control p 99.6 9.4E-14 3.2E-18 78.0 11.1 79 1-81 151-238 (464)
87 1r5m_A SIR4-interacting protei 99.6 1.1E-13 3.6E-18 76.4 11.2 79 3-83 238-323 (425)
88 3vl1_A 26S proteasome regulato 99.6 7.5E-14 2.6E-18 77.4 10.6 80 2-82 171-281 (420)
89 4ggc_A P55CDC, cell division c 99.6 1.1E-13 3.9E-18 74.1 10.8 69 13-81 240-317 (318)
90 2pm9_A Protein WEB1, protein t 99.6 1.8E-14 6E-19 79.6 7.6 77 4-81 253-339 (416)
91 4aez_A CDC20, WD repeat-contai 99.6 2.3E-13 8E-18 75.5 12.0 78 2-82 166-251 (401)
92 3dwl_C Actin-related protein 2 99.6 3.7E-14 1.3E-18 77.8 8.7 77 5-82 138-239 (377)
93 2j04_B YDR362CP, TAU91; beta p 99.6 2.2E-14 7.5E-19 82.6 8.0 74 6-81 260-344 (524)
94 2pm9_A Protein WEB1, protein t 99.6 8.2E-14 2.8E-18 77.0 10.0 80 3-83 104-201 (416)
95 2oaj_A Protein SNI1; WD40 repe 99.6 8.5E-14 2.9E-18 84.1 10.4 73 9-83 14-92 (902)
96 4aez_A CDC20, WD repeat-contai 99.6 1.3E-13 4.3E-18 76.6 10.3 80 3-83 208-297 (401)
97 4gga_A P55CDC, cell division c 99.6 2.5E-13 8.7E-18 75.8 11.6 79 1-80 134-262 (420)
98 1r5m_A SIR4-interacting protei 99.5 2.3E-13 8E-18 75.0 11.2 71 13-83 108-184 (425)
99 3v7d_B Cell division control p 99.5 3.2E-13 1.1E-17 75.9 11.6 78 2-82 300-384 (464)
100 3jro_A Fusion protein of prote 99.5 9.8E-14 3.3E-18 82.4 9.9 77 3-80 44-133 (753)
101 2oaj_A Protein SNI1; WD40 repe 99.5 1.3E-13 4.6E-18 83.2 10.2 73 3-77 566-659 (902)
102 3jro_A Fusion protein of prote 99.5 3.2E-14 1.1E-18 84.4 7.3 76 5-81 2-88 (753)
103 3i2n_A WD repeat-containing pr 99.5 1.1E-13 3.6E-18 75.1 8.7 73 9-82 256-356 (357)
104 1k8k_C P40, ARP2/3 complex 41 99.5 1.2E-13 4.2E-18 75.3 9.0 76 2-79 192-274 (372)
105 2j04_A TAU60, YPL007P, hypothe 99.5 1.5E-13 5.1E-18 79.8 9.6 69 13-81 85-162 (588)
106 3dw8_B Serine/threonine-protei 99.5 2.1E-13 7.1E-18 76.0 10.0 72 9-82 174-261 (447)
107 3dw8_B Serine/threonine-protei 99.5 3.4E-13 1.2E-17 75.2 10.8 73 8-82 222-319 (447)
108 1yfq_A Cell cycle arrest prote 99.5 4.9E-13 1.7E-17 72.3 11.0 74 9-83 190-286 (342)
109 3i2n_A WD repeat-containing pr 99.5 1.6E-13 5.6E-18 74.4 9.0 75 6-81 12-101 (357)
110 2j04_A TAU60, YPL007P, hypothe 99.5 2.5E-13 8.5E-18 78.9 10.2 65 15-81 131-213 (588)
111 1sq9_A Antiviral protein SKI8; 99.5 1.7E-13 5.9E-18 75.4 8.6 75 4-81 8-102 (397)
112 2j04_B YDR362CP, TAU91; beta p 99.5 4E-14 1.4E-18 81.5 6.3 78 4-82 300-389 (524)
113 2xyi_A Probable histone-bindin 99.5 4.1E-13 1.4E-17 75.2 10.1 77 3-80 172-264 (430)
114 2w18_A PALB2, fancn, partner a 99.5 5.9E-13 2E-17 73.5 10.3 54 24-77 294-355 (356)
115 2vdu_B TRNA (guanine-N(7)-)-me 99.5 5.5E-13 1.9E-17 75.0 10.5 80 2-82 137-232 (450)
116 2w18_A PALB2, fancn, partner a 99.5 2.2E-13 7.4E-18 75.2 8.5 81 2-83 168-273 (356)
117 2xyi_A Probable histone-bindin 99.5 1.3E-12 4.5E-17 73.2 10.9 73 6-79 225-309 (430)
118 4gq1_A NUP37; propeller, trans 99.5 1.2E-12 4.2E-17 72.7 9.5 79 2-81 176-288 (393)
119 3vu4_A KMHSV2; beta-propeller 99.5 1.1E-12 3.7E-17 72.1 9.1 78 1-79 227-336 (355)
120 1p22_A F-BOX/WD-repeat protein 99.4 4.8E-12 1.6E-16 70.9 10.8 76 1-81 162-244 (435)
121 2oit_A Nucleoporin 214KDA; NH2 99.4 6E-13 2.1E-17 75.1 7.0 70 13-82 92-184 (434)
122 1p22_A F-BOX/WD-repeat protein 99.4 1.6E-11 5.6E-16 68.8 10.9 78 1-83 202-289 (435)
123 2ovr_B FBW7, F-BOX/WD repeat p 99.4 1.4E-11 4.9E-16 69.0 10.6 77 1-82 148-231 (445)
124 1l0q_A Surface layer protein; 99.4 3.6E-11 1.2E-15 66.2 11.3 80 2-83 22-109 (391)
125 2ovr_B FBW7, F-BOX/WD repeat p 99.4 1.4E-11 4.9E-16 69.0 9.9 73 4-81 231-310 (445)
126 1l0q_A Surface layer protein; 99.4 5.1E-11 1.7E-15 65.6 11.8 81 1-83 63-151 (391)
127 2hqs_A Protein TOLB; TOLB, PAL 99.4 3.4E-11 1.2E-15 67.5 10.8 78 4-82 170-259 (415)
128 3bws_A Protein LP49; two-domai 99.3 1.7E-11 5.7E-16 68.3 8.8 74 9-83 166-247 (433)
129 3bws_A Protein LP49; two-domai 99.3 1E-10 3.5E-15 65.2 11.1 81 2-83 201-296 (433)
130 1nir_A Nitrite reductase; hemo 99.3 1.2E-10 4.1E-15 67.5 10.5 81 1-83 168-261 (543)
131 1nir_A Nitrite reductase; hemo 99.1 1.1E-09 3.7E-14 63.5 8.9 81 2-83 410-518 (543)
132 2hqs_A Protein TOLB; TOLB, PAL 99.1 7.8E-09 2.7E-13 58.0 11.9 74 7-81 217-302 (415)
133 1pby_B Quinohemoprotein amine 99.1 2.6E-09 9.1E-14 57.5 9.5 69 13-83 240-314 (337)
134 1k32_A Tricorn protease; prote 99.0 3.4E-09 1.1E-13 65.1 9.7 74 7-81 373-463 (1045)
135 2ecf_A Dipeptidyl peptidase IV 99.0 6.1E-09 2.1E-13 61.6 9.8 65 16-82 111-184 (741)
136 3o4h_A Acylamino-acid-releasin 99.0 4E-09 1.4E-13 61.1 8.5 66 17-82 153-230 (582)
137 3vgz_A Uncharacterized protein 99.0 1.3E-08 4.3E-13 55.3 9.6 81 2-83 174-266 (353)
138 1jmx_B Amine dehydrogenase; ox 99.0 1.3E-08 4.6E-13 55.0 9.2 68 14-83 255-329 (349)
139 3u4y_A Uncharacterized protein 99.0 2.3E-08 8E-13 54.0 10.1 81 1-83 29-121 (331)
140 1xfd_A DIP, dipeptidyl aminope 98.9 3.2E-09 1.1E-13 62.6 6.7 79 2-82 47-146 (723)
141 1z68_A Fibroblast activation p 98.9 1.7E-09 5.9E-14 63.8 5.4 79 2-82 46-142 (719)
142 2ojh_A Uncharacterized protein 98.9 3E-08 1E-12 52.3 9.2 72 7-80 36-120 (297)
143 3vgz_A Uncharacterized protein 98.9 3.7E-08 1.3E-12 53.4 9.5 68 16-83 143-219 (353)
144 2ojh_A Uncharacterized protein 98.9 2.5E-08 8.5E-13 52.6 8.4 75 6-81 166-260 (297)
145 3o4h_A Acylamino-acid-releasin 98.8 1.3E-08 4.5E-13 58.9 6.2 70 7-77 189-274 (582)
146 1ri6_A Putative isomerase YBHE 98.8 3.3E-08 1.1E-12 53.3 7.4 66 13-78 37-114 (343)
147 1pby_B Quinohemoprotein amine 98.8 5.1E-08 1.7E-12 52.5 8.0 81 2-82 21-127 (337)
148 3pe7_A Oligogalacturonate lyas 98.8 2.8E-08 9.5E-13 54.7 7.1 81 1-82 19-114 (388)
149 2ecf_A Dipeptidyl peptidase IV 98.8 3.1E-08 1.1E-12 58.6 7.3 66 14-80 37-139 (741)
150 1jmx_B Amine dehydrogenase; ox 98.8 6.4E-08 2.2E-12 52.4 7.6 79 2-80 31-135 (349)
151 3u4y_A Uncharacterized protein 98.8 2.3E-07 7.8E-12 50.1 9.7 74 5-79 76-160 (331)
152 3hfq_A Uncharacterized protein 98.8 3.5E-07 1.2E-11 49.8 10.2 66 13-78 85-170 (347)
153 2z3z_A Dipeptidyl aminopeptida 98.7 7.9E-08 2.7E-12 56.7 8.0 65 16-80 183-294 (706)
154 1ri6_A Putative isomerase YBHE 98.7 3.8E-08 1.3E-12 53.1 6.1 66 14-79 84-160 (343)
155 3hfq_A Uncharacterized protein 98.7 2.2E-07 7.5E-12 50.6 8.6 68 15-82 241-322 (347)
156 4a5s_A Dipeptidyl peptidase 4 98.7 1.1E-07 3.8E-12 56.7 7.2 78 2-81 46-143 (740)
157 1qks_A Cytochrome CD1 nitrite 98.7 7.6E-07 2.6E-11 52.3 10.4 80 2-83 187-279 (567)
158 3scy_A Hypothetical bacterial 98.7 7.2E-07 2.5E-11 48.9 9.8 66 13-78 210-290 (361)
159 2dg1_A DRP35, lactonase; beta 98.7 2.6E-06 8.8E-11 46.2 11.6 77 4-81 36-123 (333)
160 1k32_A Tricorn protease; prote 98.7 2.4E-07 8.1E-12 57.1 8.3 76 2-78 410-501 (1045)
161 1q7f_A NHL, brain tumor CG1071 98.7 2.2E-06 7.4E-11 45.6 11.1 80 2-82 194-283 (286)
162 2oiz_A Aromatic amine dehydrog 98.7 1.1E-07 3.6E-12 52.7 6.2 79 2-83 41-144 (361)
163 3scy_A Hypothetical bacterial 98.6 1.2E-06 4.2E-11 48.0 10.0 68 14-81 259-341 (361)
164 1xfd_A DIP, dipeptidyl aminope 98.6 3.8E-07 1.3E-11 53.9 8.1 66 17-82 176-292 (723)
165 2oiz_A Aromatic amine dehydrog 98.6 5.7E-07 2E-11 49.8 7.5 63 19-83 259-340 (361)
166 1jof_A Carboxy-CIS,CIS-muconat 98.6 4.4E-06 1.5E-10 46.1 10.9 66 13-78 144-223 (365)
167 1z68_A Fibroblast activation p 98.5 4.1E-07 1.4E-11 53.9 7.0 65 17-82 19-102 (719)
168 2z3z_A Dipeptidyl aminopeptida 98.5 8.1E-06 2.8E-10 48.3 12.1 79 2-81 344-437 (706)
169 3e5z_A Putative gluconolactona 98.5 3.5E-06 1.2E-10 45.1 9.8 75 6-81 21-101 (296)
170 1xip_A Nucleoporin NUP159; bet 98.5 1E-06 3.4E-11 49.7 7.9 65 13-81 126-193 (388)
171 2bkl_A Prolyl endopeptidase; m 98.5 9.9E-07 3.4E-11 52.4 7.3 68 14-81 121-213 (695)
172 1q7f_A NHL, brain tumor CG1071 98.4 2.1E-05 7.3E-10 41.8 11.6 79 2-80 109-195 (286)
173 3c5m_A Oligogalacturonate lyas 98.4 8.2E-07 2.8E-11 48.8 5.8 79 2-81 20-113 (396)
174 2xdw_A Prolyl endopeptidase; a 98.4 1.2E-06 4E-11 52.2 6.6 67 15-81 126-219 (710)
175 4a5s_A Dipeptidyl peptidase 4 98.4 2.3E-06 7.9E-11 51.2 7.3 67 15-83 18-105 (740)
176 3azo_A Aminopeptidase; POP fam 98.3 2.1E-06 7.1E-11 50.5 6.6 68 13-80 129-228 (662)
177 3fvz_A Peptidyl-glycine alpha- 98.3 3.1E-05 1.1E-09 42.3 10.5 68 13-80 23-122 (329)
178 3azo_A Aminopeptidase; POP fam 98.3 4.1E-06 1.4E-10 49.2 7.2 69 13-81 187-276 (662)
179 2gop_A Trilobed protease; beta 98.3 6.1E-06 2.1E-10 44.8 7.4 67 15-82 60-164 (347)
180 3sjl_D Methylamine dehydrogena 98.3 5.1E-06 1.8E-10 46.8 6.8 79 2-83 69-173 (386)
181 2mad_H Methylamine dehydrogena 98.3 4.1E-05 1.4E-09 42.8 10.2 78 2-83 57-160 (373)
182 1rwi_B Serine/threonine-protei 98.2 6.7E-05 2.3E-09 39.4 11.0 70 14-83 192-268 (270)
183 3no2_A Uncharacterized protein 98.2 3E-05 1E-09 41.6 8.8 66 16-82 127-198 (276)
184 1jof_A Carboxy-CIS,CIS-muconat 98.2 1E-05 3.4E-10 44.7 6.8 66 16-81 85-179 (365)
185 3dsm_A Uncharacterized protein 98.1 0.00021 7.3E-09 39.0 10.6 65 15-82 226-304 (328)
186 2mad_H Methylamine dehydrogena 98.1 9.7E-05 3.3E-09 41.3 9.2 66 18-83 271-354 (373)
187 3pe7_A Oligogalacturonate lyas 98.1 5.1E-05 1.8E-09 41.8 7.9 70 13-82 80-180 (388)
188 3no2_A Uncharacterized protein 98.0 0.00014 4.9E-09 39.0 9.2 73 1-77 24-106 (276)
189 1xip_A Nucleoporin NUP159; bet 98.0 0.0001 3.5E-09 41.7 8.7 63 13-81 88-157 (388)
190 3fvz_A Peptidyl-glycine alpha- 98.0 0.00029 1E-08 38.4 12.8 77 2-78 79-174 (329)
191 2xdw_A Prolyl endopeptidase; a 98.0 7.3E-05 2.5E-09 44.7 8.5 64 16-79 173-268 (710)
192 3dsm_A Uncharacterized protein 98.0 0.00013 4.4E-09 39.9 8.8 77 2-82 162-256 (328)
193 3c75_H MADH, methylamine dehyd 98.0 3.4E-05 1.2E-09 44.1 6.1 79 2-83 109-213 (426)
194 1qks_A Cytochrome CD1 nitrite 97.9 0.00011 3.8E-09 43.3 8.0 60 23-82 165-232 (567)
195 3c5m_A Oligogalacturonate lyas 97.9 9.1E-05 3.1E-09 40.7 7.2 69 13-81 187-275 (396)
196 2dg1_A DRP35, lactonase; beta 97.9 0.00052 1.8E-08 37.1 12.0 67 13-79 86-171 (333)
197 2bkl_A Prolyl endopeptidase; m 97.8 0.00021 7.1E-09 42.7 7.4 64 17-80 171-262 (695)
198 1rwi_B Serine/threonine-protei 97.8 0.00083 2.8E-08 35.2 9.3 66 15-80 151-223 (270)
199 1yr2_A Prolyl oligopeptidase; 97.8 5.6E-05 1.9E-09 45.4 4.9 66 15-81 164-254 (741)
200 1mda_H Methylamine dehydrogena 97.7 0.00029 9.9E-09 39.6 7.2 65 19-83 269-350 (368)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 97.7 0.0011 3.7E-08 35.5 11.6 66 14-79 226-299 (314)
202 3c75_H MADH, methylamine dehyd 97.7 0.0001 3.6E-09 42.1 5.5 65 19-83 324-406 (426)
203 1mda_H Methylamine dehydrogena 97.7 4.6E-05 1.6E-09 42.7 3.8 75 2-79 56-158 (368)
204 3e5z_A Putative gluconolactona 97.6 0.0018 6E-08 34.6 10.0 59 6-65 62-131 (296)
205 3iuj_A Prolyl endopeptidase; h 97.5 0.00021 7.1E-09 42.8 5.2 68 13-81 128-219 (693)
206 3dr2_A Exported gluconolactona 97.5 0.003 1E-07 34.1 9.9 66 13-78 44-115 (305)
207 3g4e_A Regucalcin; six bladed 97.5 0.0032 1.1E-07 33.9 10.1 68 15-82 150-232 (297)
208 2z2n_A Virginiamycin B lyase; 97.4 0.0036 1.2E-07 33.1 11.1 65 13-78 14-86 (299)
209 2gop_A Trilobed protease; beta 97.4 0.0014 4.6E-08 35.6 6.9 61 13-78 262-330 (347)
210 3sjl_D Methylamine dehydrogena 97.3 0.0013 4.5E-08 37.3 6.2 66 18-83 284-367 (386)
211 3hrp_A Uncharacterized protein 97.2 0.0035 1.2E-07 35.5 7.6 65 14-79 131-203 (409)
212 3g4e_A Regucalcin; six bladed 97.2 0.0081 2.8E-07 32.3 11.9 67 13-81 12-84 (297)
213 1yr2_A Prolyl oligopeptidase; 97.1 0.005 1.7E-07 37.2 7.7 63 17-80 212-304 (741)
214 2hz6_A Endoplasmic reticulum t 97.1 0.00074 2.5E-08 37.7 3.6 59 24-82 8-71 (369)
215 2ghs_A AGR_C_1268P; regucalcin 97.0 0.013 4.6E-07 32.0 9.5 65 15-81 50-120 (326)
216 2z2n_A Virginiamycin B lyase; 96.9 0.014 4.7E-07 30.8 11.7 65 13-78 182-254 (299)
217 2hz6_A Endoplasmic reticulum t 96.9 0.00039 1.3E-08 38.7 1.7 63 20-82 125-195 (369)
218 2qe8_A Uncharacterized protein 96.8 0.014 4.8E-07 32.1 7.6 69 13-81 66-156 (343)
219 1pjx_A Dfpase, DIISOPROPYLFLUO 96.8 0.017 5.7E-07 30.9 10.0 65 13-78 17-100 (314)
220 3hrp_A Uncharacterized protein 96.8 0.024 8.1E-07 32.2 9.2 64 18-81 271-356 (409)
221 1kb0_A Quinohemoprotein alcoho 96.8 0.0035 1.2E-07 37.8 5.0 49 35-83 457-511 (677)
222 1yiq_A Quinohemoprotein alcoho 96.8 0.0036 1.2E-07 37.9 5.0 49 35-83 455-509 (689)
223 2p4o_A Hypothetical protein; p 96.7 0.026 8.8E-07 30.5 11.3 68 14-81 32-106 (306)
224 2qe8_A Uncharacterized protein 96.6 0.02 7E-07 31.4 7.0 69 14-82 17-105 (343)
225 2qc5_A Streptogramin B lactona 96.6 0.028 9.5E-07 29.7 11.4 65 13-78 19-91 (300)
226 2qc5_A Streptogramin B lactona 96.5 0.032 1.1E-06 29.5 10.4 65 13-78 61-133 (300)
227 2iwa_A Glutamine cyclotransfer 96.5 0.037 1.3E-06 29.9 9.3 78 3-83 10-99 (266)
228 1fwx_A Nitrous oxide reductase 96.4 0.033 1.1E-06 33.6 7.2 64 16-79 279-361 (595)
229 3dr2_A Exported gluconolactona 96.3 0.043 1.5E-06 29.5 9.4 52 13-65 85-147 (305)
230 2ece_A 462AA long hypothetical 96.3 0.04 1.4E-06 32.2 7.1 65 17-82 141-240 (462)
231 3mbr_X Glutamine cyclotransfer 96.2 0.045 1.5E-06 29.3 6.6 57 25-83 75-137 (243)
232 2iwa_A Glutamine cyclotransfer 96.2 0.058 2E-06 29.2 7.5 65 18-83 70-139 (266)
233 2xe4_A Oligopeptidase B; hydro 96.1 0.014 4.8E-07 35.6 5.1 66 15-80 175-257 (751)
234 3nol_A Glutamine cyclotransfer 96.1 0.04 1.4E-06 29.8 6.1 57 26-82 98-158 (262)
235 4gq2_M Nucleoporin NUP120; bet 95.8 0.12 4.2E-06 32.7 8.3 35 49-83 236-270 (950)
236 3nol_A Glutamine cyclotransfer 95.6 0.11 3.8E-06 28.2 8.3 67 16-83 45-120 (262)
237 2ghs_A AGR_C_1268P; regucalcin 95.5 0.13 4.5E-06 28.1 11.3 65 14-78 179-259 (326)
238 3pbp_A Nucleoporin NUP82; beta 95.5 0.18 6.2E-06 29.5 9.1 64 15-79 67-158 (452)
239 3iuj_A Prolyl endopeptidase; h 95.2 0.26 8.9E-06 29.9 8.1 63 17-80 178-269 (693)
240 2ad6_A Methanol dehydrogenase 95.2 0.085 2.9E-06 31.4 5.7 50 34-83 443-498 (571)
241 1k3i_A Galactose oxidase precu 94.8 0.35 1.2E-05 29.2 8.0 65 18-82 190-277 (656)
242 1yiq_A Quinohemoprotein alcoho 94.7 0.39 1.3E-05 29.3 9.0 66 18-83 239-342 (689)
243 3tc9_A Hypothetical hydrolase; 94.6 0.33 1.1E-05 27.9 8.3 62 17-78 229-300 (430)
244 4fhn_B Nucleoporin NUP120; pro 94.5 0.15 5.1E-06 32.9 5.9 33 51-83 240-272 (1139)
245 2ece_A 462AA long hypothetical 94.5 0.38 1.3E-05 28.3 7.7 61 17-77 191-287 (462)
246 2xe4_A Oligopeptidase B; hydro 94.5 0.4 1.4E-05 29.5 7.4 63 18-80 225-305 (751)
247 1kb0_A Quinohemoprotein alcoho 94.3 0.48 1.7E-05 28.9 8.6 66 18-83 247-350 (677)
248 1flg_A Protein (quinoprotein e 94.0 0.1 3.5E-06 31.2 4.3 50 34-83 465-520 (582)
249 3qqz_A Putative uncharacterize 94.0 0.36 1.2E-05 26.0 9.8 70 7-78 21-99 (255)
250 3pbp_A Nucleoporin NUP82; beta 93.7 0.57 2E-05 27.5 8.6 61 13-73 124-206 (452)
251 1kv9_A Type II quinohemoprotei 93.7 0.15 5.1E-06 30.9 4.6 49 35-83 438-492 (668)
252 3mbr_X Glutamine cyclotransfer 93.7 0.41 1.4E-05 25.7 9.7 79 4-83 11-98 (243)
253 3nok_A Glutaminyl cyclase; bet 93.4 0.49 1.7E-05 25.8 9.7 66 16-83 57-129 (268)
254 1fwx_A Nitrous oxide reductase 93.2 0.82 2.8E-05 27.8 7.6 45 36-80 255-309 (595)
255 3q7m_A Lipoprotein YFGL, BAMB; 92.9 0.64 2.2E-05 25.7 7.8 57 24-82 102-165 (376)
256 3nok_A Glutaminyl cyclase; bet 92.7 0.65 2.2E-05 25.3 9.2 60 23-83 143-214 (268)
257 2p9w_A MAL S 1 allergenic prot 92.5 0.81 2.8E-05 25.8 8.3 65 15-79 138-215 (334)
258 1k3i_A Galactose oxidase precu 92.3 1.1 3.8E-05 27.1 8.3 64 19-82 248-326 (656)
259 3f7f_A Nucleoporin NUP120; nuc 92.3 0.46 1.6E-05 29.6 5.2 31 51-83 224-254 (729)
260 1w6s_A Methanol dehydrogenase 92.0 0.61 2.1E-05 28.2 5.5 50 34-83 452-507 (599)
261 1tl2_A L10, protein (tachylect 91.8 0.84 2.9E-05 24.5 7.0 62 14-79 41-116 (236)
262 2fp8_A Strictosidine synthase; 90.9 1.1 3.8E-05 24.2 8.0 65 15-79 127-216 (322)
263 4gq2_M Nucleoporin NUP120; bet 90.7 2.2 7.6E-05 27.4 7.9 34 14-47 236-269 (950)
264 1npe_A Nidogen, entactin; glyc 90.3 1.1 3.9E-05 23.5 9.5 64 16-79 38-110 (267)
265 1kv9_A Type II quinohemoprotei 89.6 2.3 8E-05 25.9 8.3 66 18-83 234-337 (668)
266 2fp8_A Strictosidine synthase; 88.8 1.8 6E-05 23.5 8.1 65 15-80 20-111 (322)
267 4hw6_A Hypothetical protein, I 88.4 2.4 8.1E-05 24.5 7.7 62 17-78 231-303 (433)
268 3hxj_A Pyrrolo-quinoline quino 88.4 1.8 6.3E-05 23.1 7.1 56 16-76 139-201 (330)
269 3qqz_A Putative uncharacterize 88.0 2 6.9E-05 23.1 10.3 76 2-77 58-149 (255)
270 3hxj_A Pyrrolo-quinoline quino 87.6 2.1 7.2E-05 22.9 7.2 57 15-76 178-241 (330)
271 1npe_A Nidogen, entactin; glyc 86.0 2.5 8.5E-05 22.2 9.2 68 14-82 167-241 (267)
272 3q7m_A Lipoprotein YFGL, BAMB; 82.4 4.5 0.00015 22.3 7.7 57 25-82 53-125 (376)
273 2p9w_A MAL S 1 allergenic prot 80.4 6 0.0002 22.4 8.3 67 16-82 15-115 (334)
274 3sre_A PON1, serum paraoxonase 80.3 6.1 0.00021 22.4 10.1 72 7-78 158-251 (355)
275 3tc9_A Hypothetical hydrolase; 80.0 6.6 0.00022 22.6 10.1 69 13-81 178-259 (430)
276 3zwu_A Alkaline phosphatase PH 77.9 9.7 0.00033 23.4 7.4 49 17-65 479-547 (592)
277 2ad6_A Methanol dehydrogenase 77.7 6.6 0.00023 23.6 4.8 24 24-47 474-497 (571)
278 3sbq_A Nitrous-oxide reductase 77.4 11 0.00036 23.5 6.2 62 17-78 326-407 (638)
279 1flg_A Protein (quinoprotein e 77.3 6.5 0.00022 23.7 4.7 24 24-47 496-519 (582)
280 2g8s_A Glucose/sorbosone dehyd 76.5 7.9 0.00027 21.6 7.6 45 14-59 18-76 (353)
281 4fhn_B Nucleoporin NUP120; pro 76.4 2.4 8.4E-05 27.7 2.9 33 15-47 239-271 (1139)
282 3das_A Putative oxidoreductase 75.3 9 0.00031 21.7 10.1 47 13-59 31-90 (347)
283 1cru_A Protein (soluble quinop 75.1 10 0.00035 22.2 9.2 47 13-59 26-87 (454)
284 3a9g_A Putative uncharacterize 73.7 9.7 0.00033 21.3 9.0 46 13-59 28-83 (354)
285 3amr_A 3-phytase; beta-propell 72.8 11 0.00038 21.6 10.3 74 3-78 171-262 (355)
286 3kya_A Putative phosphatase; s 71.8 14 0.00046 22.2 7.6 61 17-77 250-339 (496)
287 2ism_A Putative oxidoreductase 67.7 14 0.00047 20.6 9.5 63 14-78 31-113 (352)
288 3ei3_A DNA damage-binding prot 63.2 31 0.0011 23.1 9.9 54 27-81 525-593 (1158)
289 3das_A Putative oxidoreductase 60.4 21 0.00072 20.3 5.3 32 49-80 32-63 (347)
290 3f7f_A Nucleoporin NUP120; nuc 59.7 21 0.00073 22.7 4.3 31 15-47 223-253 (729)
291 4a2l_A BT_4663, two-component 57.2 33 0.0011 21.4 10.5 66 14-81 406-482 (795)
292 1n7d_A LDL receptor, low-densi 54.8 36 0.0012 21.2 6.8 65 16-81 542-616 (699)
293 3v64_C Agrin; beta propeller, 53.6 27 0.00092 19.4 10.3 66 14-79 73-147 (349)
294 2xzh_A Clathrin heavy chain 1; 53.4 31 0.0011 20.0 7.9 59 17-75 263-328 (365)
295 1w6s_A Methanol dehydrogenase 53.1 37 0.0013 20.8 8.3 23 61-83 324-346 (599)
296 2xzh_A Clathrin heavy chain 1; 51.6 33 0.0011 19.9 9.5 33 51-83 262-294 (365)
297 1n7d_A LDL receptor, low-densi 50.1 44 0.0015 20.9 6.9 64 16-79 498-571 (699)
298 3v9f_A Two-component system se 49.8 44 0.0015 20.8 8.6 65 14-80 495-569 (781)
299 1ukf_A Avirulence protein AVRP 49.7 15 0.00052 19.1 2.3 20 62-81 133-152 (188)
300 2p4o_A Hypothetical protein; p 49.7 29 0.001 18.6 11.3 66 14-79 72-147 (306)
301 4b4p_A FEDF, F18 fimbrial adhe 46.3 23 0.00079 16.5 3.5 28 48-76 31-58 (151)
302 4hw6_A Hypothetical protein, I 45.3 44 0.0015 19.4 8.4 68 13-80 181-260 (433)
303 3p5b_L Low density lipoprotein 43.0 46 0.0016 19.0 10.0 68 13-80 111-191 (400)
304 2wg3_C Hedgehog-interacting pr 42.4 52 0.0018 19.5 6.7 45 14-59 14-79 (463)
305 2vpj_A Kelch-like protein 12; 40.6 42 0.0014 17.8 5.3 57 24-82 206-281 (301)
306 4a9v_A PHOX; hydrolase, beta-p 40.4 66 0.0023 20.1 7.3 52 15-66 477-548 (592)
307 3v9f_A Two-component system se 38.8 71 0.0024 20.0 8.9 64 14-80 539-612 (781)
308 1bpo_A Protein (clathrin); cla 38.4 67 0.0023 19.6 8.7 59 17-75 262-327 (494)
309 3v65_B Low-density lipoprotein 36.6 59 0.002 18.4 9.5 64 15-79 247-318 (386)
310 2xn4_A Kelch-like protein 2; s 36.3 50 0.0017 17.5 5.8 57 24-82 204-279 (302)
311 3mwp_A Nucleoprotein; structur 31.7 12 0.00041 22.4 0.3 15 67-81 164-178 (577)
312 1ijq_A LDL receptor, low-densi 25.9 87 0.003 17.0 10.8 66 14-80 164-239 (316)
313 3ii7_A Kelch-like protein 7; p 25.2 85 0.0029 16.7 5.6 57 24-82 55-130 (306)
314 4a2l_A BT_4663, two-component 24.9 1.3E+02 0.0046 18.8 10.2 64 14-81 543-616 (795)
315 3m0c_C LDL receptor, low-densi 23.6 1.5E+02 0.0053 19.1 10.5 66 14-79 471-546 (791)
316 1xi4_A Clathrin heavy chain; a 23.4 2.2E+02 0.0074 20.7 7.9 30 18-47 263-292 (1630)
317 1xi4_A Clathrin heavy chain; a 20.4 1.6E+02 0.0056 21.2 3.8 32 52-83 262-293 (1630)
318 3sov_A LRP-6, low-density lipo 20.3 1.2E+02 0.0042 16.7 10.0 66 15-81 167-240 (318)
No 1
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.82 E-value=5.4e-19 Score=97.42 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=66.3
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNL 77 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (84)
..+.+| ...|.+++|+|++++|++|+.|+.+++||+.+... ...|.+++|+|+++++++++.|++|+||++
T Consensus 263 ~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 263 KQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred eeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 345667 88999999999999999999999999999987654 568999999999999999999999999998
Q ss_pred CCC
Q psy16880 78 NSK 80 (84)
Q Consensus 78 ~~~ 80 (84)
+..
T Consensus 342 p~~ 344 (365)
T 4h5i_A 342 PLN 344 (365)
T ss_dssp CTT
T ss_pred CCC
Confidence 643
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.81 E-value=1.7e-18 Score=94.01 Aligned_cols=82 Identities=24% Similarity=0.578 Sum_probs=74.1
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
+++++..+++| ...|.+++|+|++.+|++++.|+.+++||+..... ...|.+++|+|++..+++++.|+.|+
T Consensus 195 ~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 195 TGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp TTEEEEEECCC-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCcEEEEEccc-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 36778888888 99999999999999999999999999999987654 56799999999999999999999999
Q ss_pred EEeCCCCeec
Q psy16880 74 MWNLNSKLCD 83 (84)
Q Consensus 74 ~~~~~~~~~~ 83 (84)
+||+++++++
T Consensus 274 iwd~~~~~~~ 283 (321)
T 3ow8_A 274 VWDVGTRTCV 283 (321)
T ss_dssp EEETTTTEEE
T ss_pred EEeCCCCEEE
Confidence 9999988764
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.78 E-value=1.5e-17 Score=90.73 Aligned_cols=81 Identities=23% Similarity=0.503 Sum_probs=73.0
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
+++++..+.+| .+.|.+++|+|++..+++++.|+.+++||++.... ...|.+++|+|++..+++++.|+.|+
T Consensus 173 ~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 173 TGQQTTTFTGH-TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp TTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCcEEEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 35677888888 99999999999999999999999999999987654 56799999999999999999999999
Q ss_pred EEeCCCCee
Q psy16880 74 MWNLNSKLC 82 (84)
Q Consensus 74 ~~~~~~~~~ 82 (84)
+||+++.+.
T Consensus 252 iwd~~~~~~ 260 (340)
T 1got_B 252 LFDLRADQE 260 (340)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCcE
Confidence 999987664
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.77 E-value=9.3e-18 Score=90.40 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=71.9
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
++.+++++| .+.|.+++|+|++..+++++.|+.+++||+.+... ...|.+++|+|+++.+++++.|+.|++|
T Consensus 4 ~~~~~~~~h-~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNR-SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEE-CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCC-CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 356788898 99999999999999999999999999999987644 5689999999999999999999999999
Q ss_pred eCCCCeec
Q psy16880 76 NLNSKLCD 83 (84)
Q Consensus 76 ~~~~~~~~ 83 (84)
|+.+++++
T Consensus 83 d~~~~~~~ 90 (304)
T 2ynn_A 83 NYNTGEKV 90 (304)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99887653
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.77 E-value=1.5e-17 Score=95.12 Aligned_cols=76 Identities=29% Similarity=0.544 Sum_probs=66.9
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
+..+.+++| .+.|.+++|+|+++++++++.|+.+++||...... ...|.+++|+|+++++++++.|+.|++||
T Consensus 7 ~e~~~L~GH-~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCC-SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeEECCC-CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 345678999 99999999999999999999999999999643322 67899999999999999999999999999
Q ss_pred CCC
Q psy16880 77 LNS 79 (84)
Q Consensus 77 ~~~ 79 (84)
...
T Consensus 86 ~~~ 88 (577)
T 2ymu_A 86 RNG 88 (577)
T ss_dssp TTS
T ss_pred CCC
Confidence 754
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.76 E-value=1e-17 Score=93.34 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=73.4
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
+|++++.+++| .+.|.+++|+|++..+++|+.|+.+++||+..... ...|.+++|+|++..+++++.|+.|+
T Consensus 139 ~~~~~~~l~~h-~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~ 217 (410)
T 1vyh_C 139 TGDFERTLKGH-TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217 (410)
T ss_dssp TCCCCEEECCC-SSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCcEEEEEecc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 35677888898 99999999999999999999999999999976554 56899999999999999999999999
Q ss_pred EEeCCCCeec
Q psy16880 74 MWNLNSKLCD 83 (84)
Q Consensus 74 ~~~~~~~~~~ 83 (84)
+||+++++++
T Consensus 218 ~wd~~~~~~~ 227 (410)
T 1vyh_C 218 MWEVQTGYCV 227 (410)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCcEE
Confidence 9999887654
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.76 E-value=2.9e-17 Score=88.50 Aligned_cols=80 Identities=24% Similarity=0.448 Sum_probs=70.4
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEcc-CCCEEEEecCCCc
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCS-KQRTLISGGDDGS 71 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~-~~~~~~~~~~~~~ 71 (84)
+|+++..+++| .+.|.+++|+|++..+++++.|+.+++||+..... ...|.+++|+| ++..+++++.|+.
T Consensus 86 ~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 86 TGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp TCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCcEEEEEeCC-CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 46778888998 99999999999999999999999999999976522 56799999999 6789999999999
Q ss_pred EEEEeCCCCe
Q psy16880 72 ICMWNLNSKL 81 (84)
Q Consensus 72 i~~~~~~~~~ 81 (84)
|++||++...
T Consensus 165 v~iwd~~~~~ 174 (304)
T 2ynn_A 165 VKVWSLGQST 174 (304)
T ss_dssp EEEEETTCSS
T ss_pred EEEEECCCCC
Confidence 9999987654
No 8
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.76 E-value=6.1e-17 Score=87.44 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=68.6
Q ss_pred eEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880 4 IIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDG 70 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~ 70 (84)
+..++++| .+.|.+++|+|+ +.+|++|+.|+.+++||+..... ...|.+++|+|+++.+++++.|+
T Consensus 30 l~~tL~GH-~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 30 LRGTLKGH-NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEECCC-SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEECCc-cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 45678999 999999999997 68999999999999999876543 46899999999999999999999
Q ss_pred cEEEEeCCCCee
Q psy16880 71 SICMWNLNSKLC 82 (84)
Q Consensus 71 ~i~~~~~~~~~~ 82 (84)
.+++|+......
T Consensus 109 ~i~~~~~~~~~~ 120 (340)
T 4aow_A 109 TLRLWDLTTGTT 120 (340)
T ss_dssp EEEEEETTTTEE
T ss_pred cceEEeecccce
Confidence 999999876653
No 9
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.75 E-value=3.7e-17 Score=88.27 Aligned_cols=79 Identities=18% Similarity=0.393 Sum_probs=63.7
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------------------------
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------------------------- 47 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------------------------- 47 (84)
++++..+.+| .+.|.+++|+|+++.|++++.|+.+++||+.....
T Consensus 205 ~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd 283 (340)
T 4aow_A 205 CKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWD 283 (340)
T ss_dssp TEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEE
T ss_pred CceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEE
Confidence 4567788888 99999999999999999999999999999876533
Q ss_pred ----------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 48 ----------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 48 ----------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
...|.+++|+|+++.+++++.|+.|++||++++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 284 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 2356778888888888888888888888877664
No 10
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.75 E-value=6.3e-17 Score=88.85 Aligned_cols=75 Identities=9% Similarity=0.201 Sum_probs=67.9
Q ss_pred EEEeccCCCcCEEEEEEccCCCEEEEeCCCCc-EEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGS-ICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
+..+.+| .+.|.+++|+|++.+|++++.|+. +++||+.+... ...|.+++|+|+++.+++++.|+.|++
T Consensus 188 ~~~~~~h-~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~i 266 (355)
T 3vu4_A 188 GVLIKAH-TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHV 266 (355)
T ss_dssp CEEECCC-SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEE
T ss_pred cEEEEcc-CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEE
Confidence 6778888 999999999999999999999998 99999987654 347999999999999999999999999
Q ss_pred EeCCCC
Q psy16880 75 WNLNSK 80 (84)
Q Consensus 75 ~~~~~~ 80 (84)
||++..
T Consensus 267 w~~~~~ 272 (355)
T 3vu4_A 267 FEIFND 272 (355)
T ss_dssp EESSCC
T ss_pred EEccCC
Confidence 998754
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.74 E-value=1.1e-16 Score=87.36 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=71.2
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI 72 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i 72 (84)
++++..+.+| ...|.+++|+|++..+++++.|+.+++||++.... ...|.+++|+|+++.+++++.|+.|
T Consensus 216 ~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i 294 (340)
T 1got_B 216 GMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp CSEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CeeEEEEcCC-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence 5677888888 99999999999999999999999999999986543 2369999999999999999999999
Q ss_pred EEEeCCCCee
Q psy16880 73 CMWNLNSKLC 82 (84)
Q Consensus 73 ~~~~~~~~~~ 82 (84)
++||..+++.
T Consensus 295 ~vwd~~~~~~ 304 (340)
T 1got_B 295 NVWDALKADR 304 (340)
T ss_dssp EEEETTTCCE
T ss_pred EEEEcccCcE
Confidence 9999887654
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.74 E-value=8e-17 Score=93.43 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=71.4
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEec
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISGG 67 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~~ 67 (84)
++++..+.+| .+.|.+++|+|+++.|++++.|+.+++||+..+.. ...|.+++|+|++..+++++
T Consensus 180 ~~~~~~l~~H-~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 180 FKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp BEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred CeEeeeeccc-cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence 4567788888 99999999999999999999999999999865422 45799999999999999999
Q ss_pred CCCcEEEEeCCCCeec
Q psy16880 68 DDGSICMWNLNSKLCD 83 (84)
Q Consensus 68 ~~~~i~~~~~~~~~~~ 83 (84)
.|+.|++||+++++++
T Consensus 259 ~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVE 274 (611)
T ss_dssp TTSEEEEEETTTTEEE
T ss_pred CCCeEEEEeCCCCcee
Confidence 9999999999887653
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.74 E-value=3.3e-17 Score=90.08 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=67.5
Q ss_pred CceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEcc-CCCEEEEecCCCcEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------DSAVRSISFCS-KQRTLISGGDDGSIC 73 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~-~~~~~~~~~~~~~i~ 73 (84)
+++++.+++| ...|.+++|+|++ .+|++++.|+.+++||+..... ...|.+++|+| ++..+++++.|+.|+
T Consensus 259 ~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 259 PDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp GGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 4567788888 8999999999987 5788999999999999987655 67899999998 788999999999999
Q ss_pred EEeCCCC
Q psy16880 74 MWNLNSK 80 (84)
Q Consensus 74 ~~~~~~~ 80 (84)
+|++...
T Consensus 338 iW~~~~~ 344 (357)
T 4g56_B 338 HHHLPSE 344 (357)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9998643
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.1e-16 Score=87.01 Aligned_cols=76 Identities=21% Similarity=0.512 Sum_probs=69.0
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
++++..+.+| ...|.+++|+|++..|++++.|+.+++||+.+... ...|.+++|+|++..+++++.|+.|++
T Consensus 238 ~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 238 ANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp CCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred cceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 4567788888 99999999999999999999999999999987654 678999999999999999999999999
Q ss_pred EeCC
Q psy16880 75 WNLN 78 (84)
Q Consensus 75 ~~~~ 78 (84)
||.+
T Consensus 317 wd~p 320 (321)
T 3ow8_A 317 YDCP 320 (321)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9964
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.74 E-value=9.2e-17 Score=87.05 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=69.9
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
.+++.+++| ...|.+++|+|++.++++++.|+.+++||+.+... ...|.+++|+|++..+++++.|+.|++|
T Consensus 56 ~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 56 VPVRSFKGH-SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccceEEeCC-cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 456788888 99999999999999999999999999999987654 6789999999999999999999999999
Q ss_pred eCCCC
Q psy16880 76 NLNSK 80 (84)
Q Consensus 76 ~~~~~ 80 (84)
|++..
T Consensus 135 d~~~~ 139 (319)
T 3frx_A 135 TIKGQ 139 (319)
T ss_dssp ETTSC
T ss_pred ECCCC
Confidence 98754
No 16
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.74 E-value=1.1e-16 Score=88.65 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=72.4
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
++++..+..| .+.|.+++|+|++..|++++.++.+.+||+..... ...|.+++|+|++..+++++.|+.+++
T Consensus 129 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 129 NLQREIDQAH-VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp CEEEEETTSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cceeeecccc-cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 4566677788 99999999999999999999999999999987655 678999999999999999999999999
Q ss_pred EeCCCCeec
Q psy16880 75 WNLNSKLCD 83 (84)
Q Consensus 75 ~~~~~~~~~ 83 (84)
||+++++++
T Consensus 208 wd~~~~~~~ 216 (420)
T 3vl1_A 208 WECGTGTTI 216 (420)
T ss_dssp EETTTTEEE
T ss_pred eECCCCcee
Confidence 999887754
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.74 E-value=4.1e-17 Score=89.53 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEecCCCcE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGGDDGSI 72 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~~~~~i 72 (84)
++++++.+++| .+.|.+++|+|++ .+|++++.|+.+++||+..... ...|.+++|+|++. ++++++.|+.|
T Consensus 246 ~~~~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 246 STSCVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp C--CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCcEEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 35677888898 9999999999987 5789999999999999987655 67899999999875 56789999999
Q ss_pred EEEeCCCCe
Q psy16880 73 CMWNLNSKL 81 (84)
Q Consensus 73 ~~~~~~~~~ 81 (84)
++|++.+..
T Consensus 325 ~~w~v~~~~ 333 (344)
T 4gqb_B 325 VHHVVPTEP 333 (344)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
Confidence 999987643
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.74 E-value=1.5e-16 Score=85.55 Aligned_cols=81 Identities=22% Similarity=0.505 Sum_probs=72.7
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
++....+.+| ...|.+++|+|++..+++++.++.+.+||+..... ...|.+++|+|++..+++++.|+.|++
T Consensus 55 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 55 GKFEKTISGH-KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133 (312)
T ss_dssp CCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred cccchhhccC-CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 5667788888 99999999999999999999999999999987654 567999999999999999999999999
Q ss_pred EeCCCCeec
Q psy16880 75 WNLNSKLCD 83 (84)
Q Consensus 75 ~~~~~~~~~ 83 (84)
||+++++++
T Consensus 134 wd~~~~~~~ 142 (312)
T 4ery_A 134 WDVKTGKCL 142 (312)
T ss_dssp EETTTCCEE
T ss_pred EECCCCEEE
Confidence 999877653
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.74 E-value=1.5e-16 Score=85.56 Aligned_cols=80 Identities=23% Similarity=0.419 Sum_probs=71.1
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
.+...+.+| .+.|.+++|+|+++.+++++.++.+++||...... ...|.+++|+|+++.+++++.|+.|++|
T Consensus 14 ~~~~~~~gh-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEccc-CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 355678888 99999999999999999999999999999976544 5679999999999999999999999999
Q ss_pred eCCCCeec
Q psy16880 76 NLNSKLCD 83 (84)
Q Consensus 76 ~~~~~~~~ 83 (84)
|+++++++
T Consensus 93 d~~~~~~~ 100 (312)
T 4ery_A 93 DVSSGKCL 100 (312)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99887653
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.73 E-value=1.9e-16 Score=86.46 Aligned_cols=76 Identities=22% Similarity=0.423 Sum_probs=68.9
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
.+...+.+| ...|.+++|+|++.++++++.|+.+++||+.+... ...|.+++|+|++..+++++.|+.|++|
T Consensus 67 ~~~~~l~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w 145 (343)
T 2xzm_R 67 IPHKALTGH-NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145 (343)
T ss_dssp EEEEEECCC-SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred cccchhccC-CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence 456678888 99999999999999999999999999999987654 5689999999999999999999999999
Q ss_pred eCCC
Q psy16880 76 NLNS 79 (84)
Q Consensus 76 ~~~~ 79 (84)
|+..
T Consensus 146 d~~~ 149 (343)
T 2xzm_R 146 NILG 149 (343)
T ss_dssp ESSS
T ss_pred eccC
Confidence 9864
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.6e-16 Score=86.47 Aligned_cols=77 Identities=14% Similarity=0.370 Sum_probs=63.6
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC----C-------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL----C-------DSAVRSISFCSKQRTLISGGDDGS 71 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~----~-------~~~v~~~~~~~~~~~~~~~~~~~~ 71 (84)
+++..+++| .+.|.+++|+|++.+|++++.|+.+++||+.... . ...|.+++|+|++..+++++.|+.
T Consensus 98 ~~~~~~~~h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 98 DLLAIIEGH-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176 (330)
T ss_dssp EEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred eeEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe
Confidence 456678888 9999999999999999999999999999995321 1 567999999999999999999999
Q ss_pred EEEEeCCCC
Q psy16880 72 ICMWNLNSK 80 (84)
Q Consensus 72 i~~~~~~~~ 80 (84)
|++|+..+.
T Consensus 177 i~iW~~~~~ 185 (330)
T 2hes_X 177 VRIWKDYDD 185 (330)
T ss_dssp EEEEEEETT
T ss_pred EEEEECCCC
Confidence 999997654
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.73 E-value=2.7e-16 Score=86.34 Aligned_cols=81 Identities=22% Similarity=0.391 Sum_probs=71.5
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGS 71 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~ 71 (84)
+++++..++.| ...|.+++|+|++..+++++.|+.+++||++.... ...+.+++|+|++..+++++.|+.
T Consensus 229 ~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~ 307 (354)
T 2pbi_B 229 SGQCVQAFETH-ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT 307 (354)
T ss_dssp TCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCcEEEEecCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence 36778888888 99999999999999999999999999999986543 236889999999999999999999
Q ss_pred EEEEeCCCCee
Q psy16880 72 ICMWNLNSKLC 82 (84)
Q Consensus 72 i~~~~~~~~~~ 82 (84)
|++||+.+++.
T Consensus 308 i~vwd~~~~~~ 318 (354)
T 2pbi_B 308 INVWDVLKGSR 318 (354)
T ss_dssp EEEEETTTCSE
T ss_pred EEEEECCCCce
Confidence 99999977654
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.73 E-value=9e-17 Score=89.60 Aligned_cols=77 Identities=25% Similarity=0.509 Sum_probs=68.6
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
+|+++..+.+| .+.|.+++|+|++..+++++.|+.+++||+..... ...|.+++|+|++..+++++.|+.|+
T Consensus 327 ~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~ 405 (410)
T 1vyh_C 327 TGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405 (410)
T ss_dssp TTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 36678888888 99999999999999999999999999999987655 56899999999999999999999999
Q ss_pred EEeCC
Q psy16880 74 MWNLN 78 (84)
Q Consensus 74 ~~~~~ 78 (84)
+|+.+
T Consensus 406 vW~~r 410 (410)
T 1vyh_C 406 VWECR 410 (410)
T ss_dssp EEC--
T ss_pred EEeCC
Confidence 99864
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.72 E-value=4.6e-16 Score=85.42 Aligned_cols=81 Identities=23% Similarity=0.527 Sum_probs=71.6
Q ss_pred CCceEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGS 71 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~ 71 (84)
+++++..+.+| ...|.+++++| ++..+++++.|+.+++||+++... ...|.+++|+|++..+++++.|+.
T Consensus 185 ~~~~~~~~~~h-~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 185 SGQLLQSFHGH-GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp TCCEEEEEECC-SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCeEEEEEcCC-CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 36778888898 99999999988 468999999999999999987655 568999999999999999999999
Q ss_pred EEEEeCCCCee
Q psy16880 72 ICMWNLNSKLC 82 (84)
Q Consensus 72 i~~~~~~~~~~ 82 (84)
+++||++..+.
T Consensus 264 v~lwd~~~~~~ 274 (354)
T 2pbi_B 264 CRLYDLRADRE 274 (354)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCcE
Confidence 99999987653
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.72 E-value=1.5e-16 Score=86.19 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=68.8
Q ss_pred eEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDG 70 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~ 70 (84)
+..++++| .+.|.+++|+|++ .+|++++.|+.+++||+..... ...|.+++|+|++..+++++.|+
T Consensus 9 l~~~l~gH-~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLEGH-NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEECCC-SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEccc-cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 56688999 9999999999964 8999999999999999853211 56899999999999999999999
Q ss_pred cEEEEeCCCCeec
Q psy16880 71 SICMWNLNSKLCD 83 (84)
Q Consensus 71 ~i~~~~~~~~~~~ 83 (84)
.|++||+.+++++
T Consensus 88 ~v~~wd~~~~~~~ 100 (319)
T 3frx_A 88 TLRLWDVATGETY 100 (319)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCee
Confidence 9999999988754
No 26
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4e-16 Score=84.73 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=70.1
Q ss_pred EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880 5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL 77 (84)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (84)
...+.+| .+.|.+++|+|++..+++++.++.+.+||+..... ...|.+++|+|++..+++++.|+.|++||+
T Consensus 25 ~~~l~~h-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 25 AIKLTGH-ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEECC-SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred cEEEEEe-eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 3457888 99999999999999999999999999999987655 668999999999999999999999999999
Q ss_pred CCCeec
Q psy16880 78 NSKLCD 83 (84)
Q Consensus 78 ~~~~~~ 83 (84)
.+++++
T Consensus 104 ~~~~~~ 109 (369)
T 3zwl_B 104 SNGQCV 109 (369)
T ss_dssp TTCCEE
T ss_pred CCCcEE
Confidence 887653
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.72 E-value=4.8e-16 Score=85.31 Aligned_cols=82 Identities=12% Similarity=0.352 Sum_probs=69.2
Q ss_pred CCceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC-CCEEEEecCC
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK-QRTLISGGDD 69 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~-~~~~~~~~~~ 69 (84)
++++++.+.+| .+.|.+++|++++ ..|++++.|+.+++||++.... ...+.+++|+|+ +.++++++.|
T Consensus 158 ~~~~~~~~~~h-~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 158 QQVVLSSYRAH-AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTEEEEEECCC-SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCcEEEEEcCc-CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 46788899999 9999999999987 5789999999999999987655 346889999984 5678899999
Q ss_pred CcEEEEeCCCCeec
Q psy16880 70 GSICMWNLNSKLCD 83 (84)
Q Consensus 70 ~~i~~~~~~~~~~~ 83 (84)
+.|++||+++++++
T Consensus 237 g~v~~wd~~~~~~~ 250 (344)
T 4gqb_B 237 GTVSLVDTKSTSCV 250 (344)
T ss_dssp SEEEEEESCC--CC
T ss_pred CcEEEEECCCCcEE
Confidence 99999999987754
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.71 E-value=1.2e-16 Score=91.34 Aligned_cols=75 Identities=29% Similarity=0.628 Sum_probs=67.4
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
+|++++.+++| .+.|.+++|+|++++|++++.|+.+++||...... ...|.+++|+|+++.+++++.|+.|++
T Consensus 497 ~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 497 NGQLLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp TSCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCCEEEEEeCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 46788889999 99999999999999999999999999999753322 678999999999999999999999999
Q ss_pred Ee
Q psy16880 75 WN 76 (84)
Q Consensus 75 ~~ 76 (84)
||
T Consensus 576 Wd 577 (577)
T 2ymu_A 576 WN 577 (577)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.71 E-value=1.6e-16 Score=86.86 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=68.2
Q ss_pred ceEEEeccCCCc-CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880 3 SIIHTFVHSNNS-AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGS 71 (84)
Q Consensus 3 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~ 71 (84)
+++.++++| .+ .|.+++|+|++.+|++++.|+.+++||+..... ...|.+++|+|++..+++++.|+.
T Consensus 6 ~~~~~~~~h-~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAH-PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCS-TTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCC-CCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 467788888 66 999999999999999999999999999876431 567999999999999999999999
Q ss_pred EEEEeCCCC
Q psy16880 72 ICMWNLNSK 80 (84)
Q Consensus 72 i~~~~~~~~ 80 (84)
+++|+....
T Consensus 85 v~iw~~~~~ 93 (345)
T 3fm0_A 85 TCIWKKNQD 93 (345)
T ss_dssp EEEEEECCC
T ss_pred EEEEEccCC
Confidence 999998754
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.71 E-value=1.7e-16 Score=87.73 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=68.9
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEecC
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISGGD 68 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~ 68 (84)
+.+..+.+| .+.|.+++|+|++..|++++.|+.+++||++.... ...+.+++|+|+++.+++++.
T Consensus 240 ~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 318 (380)
T 3iz6_a 240 RAVRTYHGH-EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318 (380)
T ss_dssp CCCEEECCC-SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred cceEEECCc-CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence 456778888 99999999999999999999999999999987543 123889999999999999999
Q ss_pred CCcEEEEeCCCCee
Q psy16880 69 DGSICMWNLNSKLC 82 (84)
Q Consensus 69 ~~~i~~~~~~~~~~ 82 (84)
|+.|++||...++.
T Consensus 319 dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 319 NGDCYVWDTLLAEM 332 (380)
T ss_dssp TSCEEEEETTTCCE
T ss_pred CCCEEEEECCCCce
Confidence 99999999876654
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.71 E-value=9.6e-17 Score=88.68 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=68.8
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
.+.+.+++| .+.|.+++|+|++..|++|+.|+.+++||..+... ...|.+++|+|++..+++++.|+.+++|
T Consensus 57 ~~~~~l~gH-~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 57 VCCRTLQGH-SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp EEEEEECCC-SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred EEeeccccc-ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 467789999 99999999999999999999999999999976654 5678899999999999999999999999
Q ss_pred eCCC
Q psy16880 76 NLNS 79 (84)
Q Consensus 76 ~~~~ 79 (84)
++.+
T Consensus 136 ~~~~ 139 (380)
T 3iz6_a 136 NLSS 139 (380)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9864
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.71 E-value=6.3e-16 Score=84.36 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=68.8
Q ss_pred eEEEeccCCCcCEEEEEE-----cc-CCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEE
Q psy16880 4 IIHTFVHSNNSAVRSISF-----CS-KQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTL 63 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~ 63 (84)
+...+++| .+.|.+++| ++ ++..|++|+.|+.+++||+..... ...|.+++|+|++..+
T Consensus 13 ~~~~l~gH-~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 13 KRGILEGH-SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEECC-SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeccc-hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 46678899 999999999 66 899999999999999999864321 5679999999999999
Q ss_pred EEecCCCcEEEEeCCCCeec
Q psy16880 64 ISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 64 ~~~~~~~~i~~~~~~~~~~~ 83 (84)
++++.|+.|++||+++++++
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~ 111 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTY 111 (343)
T ss_dssp EEEETTSEEEEEETTSSCEE
T ss_pred EEEcCCCcEEEEECCCCcEE
Confidence 99999999999999887653
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.70 E-value=8.3e-16 Score=85.27 Aligned_cols=80 Identities=16% Similarity=0.476 Sum_probs=71.6
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEcc-CCCEEEEecCCCcEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCS-KQRTLISGGDDGSICM 74 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~-~~~~~~~~~~~~~i~~ 74 (84)
++++..+++| ...|.+++|+|++..+++++.|+.+++||+.+... ...+..++|+| ++..+++++.|+.|++
T Consensus 155 ~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~i 233 (393)
T 1erj_A 155 RKIVMILQGH-EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233 (393)
T ss_dssp TEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred CcEEEEEccC-CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 5677788888 99999999999999999999999999999987654 56799999999 8899999999999999
Q ss_pred EeCCCCee
Q psy16880 75 WNLNSKLC 82 (84)
Q Consensus 75 ~~~~~~~~ 82 (84)
||.++++.
T Consensus 234 wd~~~~~~ 241 (393)
T 1erj_A 234 WDSETGFL 241 (393)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99987654
No 34
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.70 E-value=6.9e-16 Score=84.38 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=68.9
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSI 72 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i 72 (84)
+++..+++| .+.|.+++|+|++..|++++.|+.+++||+..... ...|.+++|+|++..+++++.|+.|
T Consensus 96 ~~~~~~~~h-~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i 174 (345)
T 3fm0_A 96 ECVTTLEGH-ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174 (345)
T ss_dssp EEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCE
T ss_pred EEEEEccCC-CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcE
Confidence 356778888 99999999999999999999999999999976532 5679999999999999999999999
Q ss_pred EEEeCCCCe
Q psy16880 73 CMWNLNSKL 81 (84)
Q Consensus 73 ~~~~~~~~~ 81 (84)
++|+.+..+
T Consensus 175 ~~w~~~~~~ 183 (345)
T 3fm0_A 175 KLYREEEDD 183 (345)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCC
Confidence 999987653
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.69 E-value=1.2e-15 Score=84.62 Aligned_cols=68 Identities=24% Similarity=0.620 Sum_probs=62.2
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
.|.+++|+|+++.+++++.|+.+++||+..... ...|.+++|+|++..+++++.|+.|++||++++++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 489999999999999999999999999987654 56799999999999999999999999999988765
No 36
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.69 E-value=1e-15 Score=82.24 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=64.8
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCC--CC-------CCCEEEEEEcc--CCCEEEEecCCCcEEE
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK--LC-------DSAVRSISFCS--KQRTLISGGDDGSICM 74 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~--~~-------~~~v~~~~~~~--~~~~~~~~~~~~~i~~ 74 (84)
..+.+| .+.|.+++|+|+++.|++++.|+.+++||+... .. ...|.+++|++ ++..+++++.|++|++
T Consensus 3 ~~~~~h-~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAH-NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSC-SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCC-cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 456788 999999999999999999999999999998643 11 66899999975 3789999999999999
Q ss_pred EeCCCCe
Q psy16880 75 WNLNSKL 81 (84)
Q Consensus 75 ~~~~~~~ 81 (84)
||+++++
T Consensus 82 Wd~~~~~ 88 (297)
T 2pm7_B 82 WKEENGR 88 (297)
T ss_dssp EEBSSSC
T ss_pred EEcCCCc
Confidence 9998653
No 37
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.69 E-value=8.1e-16 Score=83.52 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=70.1
Q ss_pred ceEEEeccCCCcCEEEEEEccC---CCEEEEeCCCCcEEEEeCCCCC-C--------CCCEEEEEEccCCCEEEEecCCC
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSK---QHTLISGGDDGSICMWNLNSKL-C--------DSAVRSISFCSKQRTLISGGDDG 70 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~d~~~~~-~--------~~~v~~~~~~~~~~~~~~~~~~~ 70 (84)
+.+..+++| .+.|.+++|+|+ +..|++++.++.+.+||+.... . ...|.+++|+|++..+++++.|+
T Consensus 30 ~~~~~~~~h-~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 30 KDIEVTSSP-DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp CCEECSSCC-SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEeccCC-CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 355667788 999999999998 5999999999999999998622 2 67899999999999999999999
Q ss_pred cEEEEeCCCCeec
Q psy16880 71 SICMWNLNSKLCD 83 (84)
Q Consensus 71 ~i~~~~~~~~~~~ 83 (84)
.|++||+++++.+
T Consensus 109 ~v~iwd~~~~~~~ 121 (368)
T 3mmy_A 109 TAKMWDLSSNQAI 121 (368)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEEEcCCCCce
Confidence 9999999887754
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.69 E-value=3.9e-16 Score=87.42 Aligned_cols=74 Identities=14% Similarity=0.336 Sum_probs=63.1
Q ss_pred EeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc-CCCEEEEecCCCcEEEE
Q psy16880 7 TFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS-KQRTLISGGDDGSICMW 75 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~ 75 (84)
....| ...|.+++|+| ++.+|++|+.|+.|.+||+..... ...|.+++|+| ++..+++++.|++|++|
T Consensus 114 ~~~~~-~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 114 KAAPF-DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEEC-SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred cCCCC-CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 33456 78899999999 567999999999999999976543 56899999998 67899999999999999
Q ss_pred eCCCCe
Q psy16880 76 NLNSKL 81 (84)
Q Consensus 76 ~~~~~~ 81 (84)
|+++..
T Consensus 193 d~~~~~ 198 (435)
T 4e54_B 193 DFKGNI 198 (435)
T ss_dssp ETTSCE
T ss_pred eccCCc
Confidence 997654
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.68 E-value=1e-15 Score=83.18 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=71.5
Q ss_pred CCceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCC
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDD 69 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~ 69 (84)
+++++..+.+| ...|.+++|+| ++..+++++.++.+.+||+..... ...|.+++|+|++..+++++.|
T Consensus 104 ~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 182 (366)
T 3k26_A 104 TMQCIKHYVGH-GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 182 (366)
T ss_dssp TCCEEEEEESC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred hceEeeeecCC-CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence 35677888888 99999999999 899999999999999999986543 5689999999999999999999
Q ss_pred CcEEEEeCCCCe
Q psy16880 70 GSICMWNLNSKL 81 (84)
Q Consensus 70 ~~i~~~~~~~~~ 81 (84)
+.|++||+++++
T Consensus 183 g~i~i~d~~~~~ 194 (366)
T 3k26_A 183 HSLKLWRINSKR 194 (366)
T ss_dssp SCEEEEESCSHH
T ss_pred CCEEEEECCCCc
Confidence 999999998764
No 40
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.3e-15 Score=83.09 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=65.9
Q ss_pred EEEec-cCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 5 IHTFV-HSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 5 ~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
++.++ +| .+.|.+++|+| ++..+++++.|+.+.+||+..... ...+.+++|+|++..+++++.|+.|+
T Consensus 117 ~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDS-ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCC-SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCC-CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 44444 34 68899999999 999999999999999999986654 34699999999999999999999999
Q ss_pred EEeCCCCeec
Q psy16880 74 MWNLNSKLCD 83 (84)
Q Consensus 74 ~~~~~~~~~~ 83 (84)
+||+++++.+
T Consensus 196 iwd~~~~~~~ 205 (343)
T 3lrv_A 196 VYNLSSPDQA 205 (343)
T ss_dssp EEESSCTTSC
T ss_pred EEECCCCCCC
Confidence 9999887643
No 41
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.1e-15 Score=82.29 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=66.4
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI 72 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i 72 (84)
++++..+..++...+.+++|+|++.++++|+.++.+++||++.... ...|.+++|+|++..+++++ ++.|
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v 237 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTV 237 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBE
T ss_pred CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeE
Confidence 4455555444356799999999999999999999999999986653 46799999999999999998 5599
Q ss_pred EEEeCCCCee
Q psy16880 73 CMWNLNSKLC 82 (84)
Q Consensus 73 ~~~~~~~~~~ 82 (84)
++||+++.+.
T Consensus 238 ~iwd~~~~~~ 247 (343)
T 3lrv_A 238 VCFDLRKDVG 247 (343)
T ss_dssp EEEETTSSTT
T ss_pred EEEEcCCCCc
Confidence 9999987654
No 42
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.5e-16 Score=85.91 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=67.0
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC--CCEEEEecCCC
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK--QRTLISGGDDG 70 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~--~~~~~~~~~~~ 70 (84)
|+++..+++| .+.|.+++|+|++..|++++.++.+.+||+..... ...|.+++|+++ +..+++++.|+
T Consensus 1 G~~~~~~~~h-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 1 GSMVVIANAH-NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ----CCEEEC-CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCccEEecCC-cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 5677888899 99999999999999999999999999999973322 568999999876 89999999999
Q ss_pred cEEEEeCCCCe
Q psy16880 71 SICMWNLNSKL 81 (84)
Q Consensus 71 ~i~~~~~~~~~ 81 (84)
.|++||+.+++
T Consensus 80 ~v~iwd~~~~~ 90 (379)
T 3jrp_A 80 KVLIWKEENGR 90 (379)
T ss_dssp CEEEEEEETTE
T ss_pred EEEEEEcCCCc
Confidence 99999998765
No 43
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.68 E-value=9.5e-17 Score=89.12 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=64.9
Q ss_pred EeccCCCcCEEEEEEcc--------CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCC-CEEEEecCCC
Q psy16880 7 TFVHSNNSAVRSISFCS--------KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQ-RTLISGGDDG 70 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~--------~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~-~~~~~~~~~~ 70 (84)
.+++| .+.|.+++|+| ++++|++++.|+.+++||+..... ...+.+++|+|++ ..+++++.|+
T Consensus 131 ~~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~ 209 (393)
T 4gq1_A 131 GKSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNG 209 (393)
T ss_dssp TTTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred ccCCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence 35778 99999999998 788999999999999999976544 6789999999987 4789999999
Q ss_pred cEEEEeCCCCee
Q psy16880 71 SICMWNLNSKLC 82 (84)
Q Consensus 71 ~i~~~~~~~~~~ 82 (84)
.|++||+++++.
T Consensus 210 ~v~~wd~~t~~~ 221 (393)
T 4gq1_A 210 NIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEETTCCC-
T ss_pred EEEEEECCCCcc
Confidence 999999987653
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.67 E-value=3.1e-16 Score=87.85 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=68.0
Q ss_pred CceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCC
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDG 70 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~ 70 (84)
++.+..+++| ...|.+++|+|++. .+++++.|+.+++||++.... ...|.+++|+|++..+++++.|+
T Consensus 240 ~~~~~~~~~h-~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 240 GKELWNLRMH-KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp SCBCCCSBCC-SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred cceeEEEecc-cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence 3445567778 89999999999875 788999999999999976543 56799999999999999999999
Q ss_pred cEEEEeCCCCee
Q psy16880 71 SICMWNLNSKLC 82 (84)
Q Consensus 71 ~i~~~~~~~~~~ 82 (84)
.|++||++++++
T Consensus 319 ~i~iwd~~~~~~ 330 (435)
T 4e54_B 319 EIRVYSASQWDC 330 (435)
T ss_dssp CEEEEESSSSSS
T ss_pred EEEEEECCCCcc
Confidence 999999987653
No 45
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.67 E-value=8.5e-16 Score=89.17 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=68.1
Q ss_pred ceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
+.+..+++| ...|.+++|+|++. .+++++.|+.+++||...... ...|.+++|+|+++.+++++.|+.|++
T Consensus 138 ~~~~~l~gh-~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l 216 (611)
T 1nr0_A 138 TSNGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216 (611)
T ss_dssp CBCBCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCcceecCC-CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence 344556788 89999999999886 699999999999999876543 568999999999999999999999999
Q ss_pred EeCCCCee
Q psy16880 75 WNLNSKLC 82 (84)
Q Consensus 75 ~~~~~~~~ 82 (84)
||..++++
T Consensus 217 wd~~~g~~ 224 (611)
T 1nr0_A 217 YNGVDGTK 224 (611)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99877654
No 46
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.67 E-value=2.4e-15 Score=82.69 Aligned_cols=80 Identities=14% Similarity=0.226 Sum_probs=70.6
Q ss_pred CceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCC----C------CCCEEEEEEcc-CCCEEEEecCC
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKL----C------DSAVRSISFCS-KQRTLISGGDD 69 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~----~------~~~v~~~~~~~-~~~~~~~~~~~ 69 (84)
++++..+..| .+.|.+++|+|++. .+++++.++.+++||+.... . ...|.+++|+| ++..+++++.|
T Consensus 194 ~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d 272 (383)
T 3ei3_B 194 GHEIFKEKLH-KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR 272 (383)
T ss_dssp SCEEEEEECS-SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS
T ss_pred CCEEEEeccC-CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC
Confidence 5677788888 99999999999998 99999999999999998632 2 67899999999 99999999999
Q ss_pred CcEEEEeCCCCee
Q psy16880 70 GSICMWNLNSKLC 82 (84)
Q Consensus 70 ~~i~~~~~~~~~~ 82 (84)
+.|++||+++++.
T Consensus 273 ~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 273 NEIRVYSSYDWSK 285 (383)
T ss_dssp SEEEEEETTBTTS
T ss_pred CcEEEEECCCCcc
Confidence 9999999987654
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.67 E-value=2.8e-15 Score=80.53 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=66.9
Q ss_pred ceEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC--CCEEEEecCC
Q psy16880 3 SIIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK--QRTLISGGDD 69 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~--~~~~~~~~~~ 69 (84)
+++..+++| .+.|.+++|++ ++..|++++.|+.+++||+..... ...|.+++|+|+ +..+++++.|
T Consensus 44 ~~~~~l~gH-~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d 122 (297)
T 2pm7_B 44 KLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122 (297)
T ss_dssp CCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEEEEEccc-cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence 466788899 99999999986 389999999999999999976531 567999999997 7899999999
Q ss_pred CcEEEEeCCCC
Q psy16880 70 GSICMWNLNSK 80 (84)
Q Consensus 70 ~~i~~~~~~~~ 80 (84)
+.|++||+++.
T Consensus 123 ~~v~~wd~~~~ 133 (297)
T 2pm7_B 123 GKVSVVEFKEN 133 (297)
T ss_dssp SEEEEEEBCSS
T ss_pred CcEEEEEecCC
Confidence 99999998764
No 48
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.66 E-value=1.7e-15 Score=81.51 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=65.7
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEcc--CCCEEEEecCCCcE
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCS--KQRTLISGGDDGSI 72 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~--~~~~~~~~~~~~~i 72 (84)
..+++| .+.|.+++|+|++..|++++.++.+++||+..... ...|.+++|+| ++..+++++.|+.|
T Consensus 5 ~~~~gH-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGH-DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCC-SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCccc-ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 355778 99999999999999999999999999999986532 67899999999 58999999999999
Q ss_pred EEEeCCCC
Q psy16880 73 CMWNLNSK 80 (84)
Q Consensus 73 ~~~~~~~~ 80 (84)
++||++++
T Consensus 84 ~vwd~~~~ 91 (351)
T 3f3f_A 84 KLWEEDPD 91 (351)
T ss_dssp EEEEECTT
T ss_pred EEEecCCC
Confidence 99999875
No 49
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.66 E-value=3.4e-15 Score=81.10 Aligned_cols=77 Identities=17% Similarity=0.346 Sum_probs=69.3
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEE--ccCCCEEEEecCCCcEEEEeC
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISF--CSKQRTLISGGDDGSICMWNL 77 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~--~~~~~~~~~~~~~~~i~~~~~ 77 (84)
..+.+| .+.|.+++|+|++..+++++.++.+.+||+..... ...|.+++| +|++..+++++.|+.|++||+
T Consensus 80 ~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMH-TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEEC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccc-cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 667778 99999999999999999999999999999987765 678999999 889999999999999999999
Q ss_pred CCCeec
Q psy16880 78 NSKLCD 83 (84)
Q Consensus 78 ~~~~~~ 83 (84)
++++++
T Consensus 159 ~~~~~~ 164 (368)
T 3mmy_A 159 RSSNPM 164 (368)
T ss_dssp SCSSCS
T ss_pred CCCcEE
Confidence 877643
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-15 Score=84.46 Aligned_cols=77 Identities=26% Similarity=0.460 Sum_probs=68.3
Q ss_pred CCceEEEe-ccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCC---CC---C------CCCEEEEEEccCCCEEEEe
Q psy16880 1 DGSIIHTF-VHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNS---KL---C------DSAVRSISFCSKQRTLISG 66 (84)
Q Consensus 1 ~g~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~---~~---~------~~~v~~~~~~~~~~~~~~~ 66 (84)
+|+++..+ ++| .+.|.+++|+| ++.+|++++.|+.+++||+.. .. . ...|.+++|+|++..++++
T Consensus 51 ~g~~~~~~~~~h-~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 51 RGKLIATLMENE-PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCCEEEEECTTT-TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred cceEEeeeccCC-CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence 36778888 777 99999999999 999999999999999999865 21 1 6789999999999999999
Q ss_pred cCCCcEEEEeCC
Q psy16880 67 GDDGSICMWNLN 78 (84)
Q Consensus 67 ~~~~~i~~~~~~ 78 (84)
+.|+.|++||+.
T Consensus 130 s~dg~i~vwd~~ 141 (437)
T 3gre_A 130 SKDGQIIVLKVN 141 (437)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCEEEEEEec
Confidence 999999999984
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.65 E-value=3.4e-15 Score=87.53 Aligned_cols=77 Identities=22% Similarity=0.428 Sum_probs=68.7
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
...+.+.+| ...|.+++|+|+++++++++.|+.+++||+..... ...|.+++|+|++..+++++.|+.|++|
T Consensus 421 ~~~~~~~~h-~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 421 VAQRRLTGH-SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp EEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred cccceecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 345677888 99999999999999999999999999999987644 6689999999999999999999999999
Q ss_pred eCCCC
Q psy16880 76 NLNSK 80 (84)
Q Consensus 76 ~~~~~ 80 (84)
|....
T Consensus 500 d~~~~ 504 (694)
T 3dm0_A 500 NTLGE 504 (694)
T ss_dssp CTTSC
T ss_pred ECCCC
Confidence 97543
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.65 E-value=2.4e-15 Score=88.81 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=71.9
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
+..+.+++| .+.|.+++|+|++..+++++.++.+.+||+.++.. ...|.+++|+|++..+++++.++.|.+|
T Consensus 4 ~~~~~~~~h-~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 4 DIKKTFSNR-SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCEEEEEEE-CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ccceeeecC-CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 356778888 99999999999999999999999999999987644 6789999999999999999999999999
Q ss_pred eCCCCeec
Q psy16880 76 NLNSKLCD 83 (84)
Q Consensus 76 ~~~~~~~~ 83 (84)
++.+++.+
T Consensus 83 ~~~~~~~~ 90 (814)
T 3mkq_A 83 NYNTGEKV 90 (814)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99887653
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1e-14 Score=79.35 Aligned_cols=74 Identities=18% Similarity=0.445 Sum_probs=60.8
Q ss_pred eEEEe-cc-CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC-------C-------CCCEEEEEEccCCCEEEEec
Q psy16880 4 IIHTF-VH-SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL-------C-------DSAVRSISFCSKQRTLISGG 67 (84)
Q Consensus 4 ~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~-------~-------~~~v~~~~~~~~~~~~~~~~ 67 (84)
.+..+ .+ | ...|.+++|+|++.+|++++.|+.+++||+.... . ...|.+++|+|+++.+++++
T Consensus 48 ~~~~~~~~~h-~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 48 LIDVLDETAH-KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp EEEEECTTCC-CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred EEEEEecCCc-cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 34445 34 6 8999999999999999999999999999984321 1 56899999999999999999
Q ss_pred CCCcEEEEeCC
Q psy16880 68 DDGSICMWNLN 78 (84)
Q Consensus 68 ~~~~i~~~~~~ 78 (84)
.|+.|++||++
T Consensus 127 ~D~~v~iwd~~ 137 (330)
T 2hes_X 127 RDKSVWIWETD 137 (330)
T ss_dssp TTSCEEEEECC
T ss_pred CCCEEEEEecc
Confidence 99999999984
No 54
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.64 E-value=3.6e-15 Score=82.66 Aligned_cols=80 Identities=13% Similarity=0.232 Sum_probs=70.2
Q ss_pred ceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI 72 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i 72 (84)
+++..+.+| ...|.+++|+|++ ..+++++.++.+.+||+..... ...|.+++|+|++..+++++.|+.|
T Consensus 122 ~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 200 (402)
T 2aq5_A 122 EPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRV 200 (402)
T ss_dssp SCSEEEECC-SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CceEEecCC-CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcE
Confidence 456677888 9999999999997 6999999999999999986543 4579999999999999999999999
Q ss_pred EEEeCCCCeec
Q psy16880 73 CMWNLNSKLCD 83 (84)
Q Consensus 73 ~~~~~~~~~~~ 83 (84)
++||+++++.+
T Consensus 201 ~iwd~~~~~~~ 211 (402)
T 2aq5_A 201 RVIEPRKGTVV 211 (402)
T ss_dssp EEEETTTTEEE
T ss_pred EEEeCCCCcee
Confidence 99999887654
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.5e-15 Score=78.69 Aligned_cols=79 Identities=18% Similarity=0.364 Sum_probs=68.5
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
+++++..++.| .+.|.+++|+|++ .+++++.++.+.+||+..... ...+.+++|+|+++ +++++.|+.|+
T Consensus 214 ~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 214 TGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp TCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred chhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence 35678888888 9999999999998 588999999999999987765 56899999999998 66788999999
Q ss_pred EEeCCCCee
Q psy16880 74 MWNLNSKLC 82 (84)
Q Consensus 74 ~~~~~~~~~ 82 (84)
+|++++++.
T Consensus 291 iw~~~~~~~ 299 (313)
T 3odt_A 291 IFSQEKSRW 299 (313)
T ss_dssp EEESCGGGC
T ss_pred EEeCCCCce
Confidence 999987654
No 56
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.64 E-value=1.1e-15 Score=82.68 Aligned_cols=73 Identities=11% Similarity=0.172 Sum_probs=59.9
Q ss_pred EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc--CCCEEEEecCCCcEEEE
Q psy16880 7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS--KQRTLISGGDDGSICMW 75 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~--~~~~~~~~~~~~~i~~~ 75 (84)
.+.+| .+.|.+++|+|+++.|++++.|+.+++||+..... ...|.+++|++ ++..+++++.|++|++|
T Consensus 8 ~~~~H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSH-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccc-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 34567 99999999999999999999999999999975421 67899999975 47899999999999999
Q ss_pred eCCCC
Q psy16880 76 NLNSK 80 (84)
Q Consensus 76 ~~~~~ 80 (84)
|++++
T Consensus 87 d~~~~ 91 (316)
T 3bg1_A 87 REENG 91 (316)
T ss_dssp CCSSS
T ss_pred ECCCC
Confidence 99875
No 57
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.64 E-value=1e-14 Score=78.45 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=68.2
Q ss_pred eEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCC----------C------CCCEEEEEEccC--CCEE
Q psy16880 4 IIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKL----------C------DSAVRSISFCSK--QRTL 63 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~----------~------~~~v~~~~~~~~--~~~~ 63 (84)
++..+.+| .+.|.+++|+| ++..|++++.|+.+++||+.... . ...|.+++|+|+ +..+
T Consensus 49 ~~~~~~~~-~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 49 LSDSWRAH-DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEECC-SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred ecceeccC-CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 55667778 99999999999 59999999999999999998652 1 568999999999 9999
Q ss_pred EEecCCCcEEEEeCCCCee
Q psy16880 64 ISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 64 ~~~~~~~~i~~~~~~~~~~ 82 (84)
++++.|+.|++||+++++.
T Consensus 128 ~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp EEEETTCEEEEEECSSTTC
T ss_pred EEecCCCcEEEecCCChHH
Confidence 9999999999999987654
No 58
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.64 E-value=1.1e-14 Score=80.66 Aligned_cols=76 Identities=18% Similarity=0.434 Sum_probs=66.8
Q ss_pred EeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCC-------C-------CCCEEEEEEccCC-CEEEEecCCC
Q psy16880 7 TFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKL-------C-------DSAVRSISFCSKQ-RTLISGGDDG 70 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~-------~-------~~~v~~~~~~~~~-~~~~~~~~~~ 70 (84)
.+.+| .+.|.+++|+| ++..|++++.|+.+.+||+.... . ...|.+++|+|++ ..+++++.|+
T Consensus 76 ~~~~h-~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 76 LVCGH-TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CBCCC-SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred eEecC-CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 45567 89999999999 89999999999999999998752 2 6689999999997 6899999999
Q ss_pred cEEEEeCCCCeec
Q psy16880 71 SICMWNLNSKLCD 83 (84)
Q Consensus 71 ~i~~~~~~~~~~~ 83 (84)
.|++||+++++++
T Consensus 155 ~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 155 VILVWDVGTGAAV 167 (402)
T ss_dssp CEEEEETTTTEEE
T ss_pred EEEEEECCCCCcc
Confidence 9999999887654
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.63 E-value=1.4e-14 Score=79.65 Aligned_cols=81 Identities=15% Similarity=0.298 Sum_probs=69.9
Q ss_pred CceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------------------CCCEEEEEEcc-C
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------------------DSAVRSISFCS-K 59 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------------------~~~v~~~~~~~-~ 59 (84)
++....+.+| .+.|.+++|+| ++..+++++.++.+.+||+..... ...|.+++|+| +
T Consensus 33 ~~~~~~~~~h-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 33 NKDRDVERIH-GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CTTEEECCCC-SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred Ccceeeeecc-CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 3456677788 99999999999 999999999999999999986533 45799999999 7
Q ss_pred CCEEEEecCCCcEEEEeCCCCeec
Q psy16880 60 QRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
+..+++++.|+.|++||+.+++.+
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~ 135 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTA 135 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEE
T ss_pred CcEEEEEeCCCeEEEeeCCCCccc
Confidence 789999999999999999887653
No 60
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.63 E-value=1.1e-14 Score=80.12 Aligned_cols=82 Identities=18% Similarity=0.466 Sum_probs=69.6
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC-CCEEEEecCC
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK-QRTLISGGDD 69 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~-~~~~~~~~~~ 69 (84)
+++++..+++| .+.|.+++|++++. .+++++.|+.+++||++.... ...+.+++|+|+ +.++++++.|
T Consensus 170 ~~~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 170 QKAVLKSYNAH-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp TTEEEEEECCC-SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred CCcEEEEEcCC-CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence 36778888898 99999999999874 788999999999999987654 456899999997 4678899999
Q ss_pred CcEEEEeCCCCeec
Q psy16880 70 GSICMWNLNSKLCD 83 (84)
Q Consensus 70 ~~i~~~~~~~~~~~ 83 (84)
+.|++||+++++++
T Consensus 249 ~~i~~wd~~~~~~~ 262 (357)
T 4g56_B 249 GNVSLVNIKNPDSA 262 (357)
T ss_dssp SCEEEEESSCGGGC
T ss_pred cceeEEECCCCcEe
Confidence 99999999877643
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.63 E-value=9.3e-15 Score=79.13 Aligned_cols=74 Identities=18% Similarity=0.389 Sum_probs=64.8
Q ss_pred eEEEeccCCCcCEEEEEEccCC----CEEEEeCCCCcEEEEeCCCCC-------C----CCCEEEEEEccCCCEEEEecC
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQ----HTLISGGDDGSICMWNLNSKL-------C----DSAVRSISFCSKQRTLISGGD 68 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~~~~~d~~~~~-------~----~~~v~~~~~~~~~~~~~~~~~ 68 (84)
++..+++| .+.|.+++|+|++ ..|++++.|+.+++||+.... . ...|.+++|+|++..+++++.
T Consensus 204 ~~~~l~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 204 EEQKLEAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp EEECCBCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred eeeecccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 56677888 9999999999986 789999999999999987521 1 568999999999999999999
Q ss_pred CCcEEEEeCC
Q psy16880 69 DGSICMWNLN 78 (84)
Q Consensus 69 ~~~i~~~~~~ 78 (84)
|+.|++|+..
T Consensus 283 D~~v~lw~~~ 292 (316)
T 3bg1_A 283 DNKVTLWKES 292 (316)
T ss_dssp SSCEEEEEEC
T ss_pred CCeEEEEEEC
Confidence 9999999975
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.62 E-value=2.8e-14 Score=78.44 Aligned_cols=80 Identities=19% Similarity=0.403 Sum_probs=69.3
Q ss_pred CceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-----------------------CCCEEEEEEc
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-----------------------DSAVRSISFC 57 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-----------------------~~~v~~~~~~ 57 (84)
++.+..+..| .+.|.+++|+|++. .+++++.++.+.+||++.... ...|.+++|+
T Consensus 176 ~~~~~~~~~~-~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 176 GSCSHILQGH-RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SCCCEEECCC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred cceeeeecCC-CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 4566777788 89999999999988 689999999999999975531 5679999999
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 58 SKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 58 ~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
|++..+++++.|+.+++||+++++.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCB
T ss_pred CCCCEEEEecCCCeEEEEECCCCcc
Confidence 9999999999999999999987654
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.62 E-value=1.4e-14 Score=79.66 Aligned_cols=78 Identities=15% Similarity=0.333 Sum_probs=68.6
Q ss_pred ceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc-CCCEEEEecCCCc
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS-KQRTLISGGDDGS 71 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~-~~~~~~~~~~~~~ 71 (84)
++...+.+| .+.|.+++|+|++ ..+++++.++.+.+||+..... ...|.+++|+| ++..+++++.|+.
T Consensus 64 ~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 64 KLHRTASPF-DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EEEEEECCC-SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred ceEEeccCC-CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 456778888 9999999999998 9999999999999999986544 56899999999 6789999999999
Q ss_pred EEEEeCCCCe
Q psy16880 72 ICMWNLNSKL 81 (84)
Q Consensus 72 i~~~~~~~~~ 81 (84)
|++||+++..
T Consensus 143 i~iwd~~~~~ 152 (383)
T 3ei3_B 143 TTLRDFSGSV 152 (383)
T ss_dssp EEEEETTSCE
T ss_pred EEEEECCCCc
Confidence 9999998643
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-14 Score=77.49 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=68.7
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
++++.+++| .+.|.+++| +++..+++++.++.+.+||+..... ...|.+++|+|++..+++++.++.+++|
T Consensus 9 ~~~~~l~~h-~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGH-DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCC-SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCC-CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 567889999 999999999 9999999999999999999976644 6789999999999999999999999999
Q ss_pred eCCCC
Q psy16880 76 NLNSK 80 (84)
Q Consensus 76 ~~~~~ 80 (84)
++...
T Consensus 87 ~~~~~ 91 (313)
T 3odt_A 87 PLFAT 91 (313)
T ss_dssp ETTCC
T ss_pred Eeeec
Confidence 98653
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.62 E-value=1e-14 Score=89.30 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=69.5
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLN 78 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (84)
..+.+| .+.|.+++|+|+++.+++++.++.+.+||..+... ...|.+++|+|++..+++++.|+.|++||+.
T Consensus 609 ~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 609 LVVRPH-TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp EEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEecc-cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 356678 99999999999999999999999999999987655 6789999999999999999999999999998
Q ss_pred CCeec
Q psy16880 79 SKLCD 83 (84)
Q Consensus 79 ~~~~~ 83 (84)
+++++
T Consensus 688 ~~~~~ 692 (1249)
T 3sfz_A 688 TGKLV 692 (1249)
T ss_dssp TCCEE
T ss_pred CCceE
Confidence 87654
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.62 E-value=2.8e-14 Score=76.44 Aligned_cols=80 Identities=18% Similarity=0.429 Sum_probs=67.5
Q ss_pred CCceEEEec--cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------------
Q psy16880 1 DGSIIHTFV--HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------------- 47 (84)
Q Consensus 1 ~g~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------------- 47 (84)
+|++++.++ +| ...|.+++|+|+++.+++|+.|+.+++||+.+...
T Consensus 54 tg~~~~~~~~~~~-~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 54 SGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH 132 (318)
T ss_dssp TCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred CCCEEEEEEecCC-CCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceE
Confidence 467777664 45 67899999999999999999999999999986543
Q ss_pred -----------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 48 -----------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 48 -----------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
...+..+.+.+++..+++++.|+.|++||+++++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 4567888899999999999999999999998654
No 67
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.62 E-value=1.4e-15 Score=83.36 Aligned_cols=78 Identities=10% Similarity=0.228 Sum_probs=62.1
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC---C-------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL---C-------DSAVRSISFCSKQRTLISGGDDGSI 72 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~---~-------~~~v~~~~~~~~~~~~~~~~~~~~i 72 (84)
+++..+++| .+.|.+++|+|++..|++++.|+.+++||+.... . ...|.+++|+|++..+++++.|+.|
T Consensus 46 ~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 124 (377)
T 3dwl_C 46 KHARTFSDH-DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVI 124 (377)
T ss_dssp EECCCBCCC-SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCE
T ss_pred EEEEEEecC-CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeE
Confidence 455667788 9999999999999999999999999999998765 2 6789999999999999999999999
Q ss_pred EEEeCCCCe
Q psy16880 73 CMWNLNSKL 81 (84)
Q Consensus 73 ~~~~~~~~~ 81 (84)
++||+++++
T Consensus 125 ~iwd~~~~~ 133 (377)
T 3dwl_C 125 SVCYFEQEN 133 (377)
T ss_dssp EECCC----
T ss_pred EEEEECCcc
Confidence 999998764
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.61 E-value=2e-14 Score=84.30 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=67.5
Q ss_pred EEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880 5 IHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDGS 71 (84)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~ 71 (84)
...+++| .+.|.+++|+|++ ..|++++.|+.+++||+..... ...|.+++|+|+++.+++++.|+.
T Consensus 375 ~~~l~~H-~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMRAH-TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEECC-SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhcccC-CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 4567888 9999999999864 7999999999999999875321 567999999999999999999999
Q ss_pred EEEEeCCCCeec
Q psy16880 72 ICMWNLNSKLCD 83 (84)
Q Consensus 72 i~~~~~~~~~~~ 83 (84)
|++||+.+++++
T Consensus 454 v~vwd~~~~~~~ 465 (694)
T 3dm0_A 454 LRLWDLAAGVST 465 (694)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCcce
Confidence 999999887653
No 69
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.61 E-value=4.3e-14 Score=76.09 Aligned_cols=80 Identities=18% Similarity=0.347 Sum_probs=71.6
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
++.+..++.| .+.|.+++|+|++..+++++.++.+.+||+..... ...+.+++|+|++..+++++.++.+.+|
T Consensus 173 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 173 QTLVRQFQGH-TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp TEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred Cceeeeeecc-cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 5667788888 89999999999999999999999999999987655 6789999999999999999999999999
Q ss_pred eCCCCee
Q psy16880 76 NLNSKLC 82 (84)
Q Consensus 76 ~~~~~~~ 82 (84)
++++.+.
T Consensus 252 ~~~~~~~ 258 (337)
T 1gxr_A 252 HVNKPDK 258 (337)
T ss_dssp ETTSSCE
T ss_pred ECCCCCe
Confidence 9987653
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.8e-15 Score=83.59 Aligned_cols=81 Identities=19% Similarity=0.423 Sum_probs=68.6
Q ss_pred CceEEEecc--CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEcc----CCCEEEEec
Q psy16880 2 GSIIHTFVH--SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCS----KQRTLISGG 67 (84)
Q Consensus 2 g~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~----~~~~~~~~~ 67 (84)
++++..++. | .+.|.+++|+|++..+++++.++.+++||++.... ...|.+++|+| ++..+++++
T Consensus 202 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 202 LERLQIIENSPR-HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp CCEEEEEECCGG-GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred CeeeEEEccCCC-CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 567777777 6 89999999999999999999999999999987544 34688996664 567899999
Q ss_pred CCCcEEEEeCCCCeec
Q psy16880 68 DDGSICMWNLNSKLCD 83 (84)
Q Consensus 68 ~~~~i~~~~~~~~~~~ 83 (84)
.|+.|++||+++++++
T Consensus 281 ~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp TTEEEEEEETTTTEEE
T ss_pred CCCcEEEEEcCCCcEE
Confidence 9999999999987753
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.61 E-value=1.9e-14 Score=79.17 Aligned_cols=79 Identities=28% Similarity=0.330 Sum_probs=67.5
Q ss_pred CceEEEecc-------------CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----C----------------
Q psy16880 2 GSIIHTFVH-------------SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----D---------------- 48 (84)
Q Consensus 2 g~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----~---------------- 48 (84)
++++..+.. | ...|.+++|+|++..|++++.++.+.+||+..... .
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 268 GERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp CCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred CcccceeccCccccccccccccc-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 456677777 7 89999999999999999999999999999976543 2
Q ss_pred --------CCEEEEEEccCC----------CEEEEecCCCcEEEEeCCCCe
Q psy16880 49 --------SAVRSISFCSKQ----------RTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 49 --------~~v~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~ 81 (84)
..|.+++|+|++ ..+++++.|+.|++|++.+++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 359999999998 799999999999999998764
No 72
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.61 E-value=7.6e-15 Score=82.73 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=64.5
Q ss_pred EEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 5 IHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
+..+.+| .+.|.+++|+|+ +..+++++.|+.+++||++.... ...+.+++|+|++..+++++.|+.|++||
T Consensus 142 ~~~~~~h-~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 142 HKLLKDA-GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYL 220 (434)
T ss_dssp EECCCSG-GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eeccCCC-CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEc
Confidence 3455667 899999999997 78999999999999999987633 45799999999999999999999999999
Q ss_pred CC
Q psy16880 77 LN 78 (84)
Q Consensus 77 ~~ 78 (84)
.+
T Consensus 221 ~~ 222 (434)
T 2oit_A 221 PT 222 (434)
T ss_dssp TT
T ss_pred cC
Confidence 87
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.61 E-value=1.5e-14 Score=85.44 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=71.5
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
+|+.+..+.+| .+.|.+++|+|++..+++++.++.+.+||+.+... ...|.+++|+|+++.+++++.|+.|+
T Consensus 44 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 122 (814)
T 3mkq_A 44 TQVEVRSIQVT-ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (814)
T ss_dssp TTEEEEEEECC-SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCceEEEEecC-CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence 35677888888 99999999999999999999999999999987655 66899999999999999999999999
Q ss_pred EEeCCCC
Q psy16880 74 MWNLNSK 80 (84)
Q Consensus 74 ~~~~~~~ 80 (84)
+|++.++
T Consensus 123 vw~~~~~ 129 (814)
T 3mkq_A 123 LWNWENN 129 (814)
T ss_dssp EEEGGGT
T ss_pred EEECCCC
Confidence 9998765
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2e-14 Score=78.44 Aligned_cols=77 Identities=17% Similarity=0.359 Sum_probs=68.5
Q ss_pred ceEEEeccCCCcCEEEEEEccC--CCEEEEeCCCCcEEEEeCCCCC--C-------CCCEEEEEEccC--CCEEEEecCC
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSK--QHTLISGGDDGSICMWNLNSKL--C-------DSAVRSISFCSK--QRTLISGGDD 69 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~d~~~~~--~-------~~~v~~~~~~~~--~~~~~~~~~~ 69 (84)
+.+..+.+| .+.|.+++|+++ +..|++++.|+.+.+||+.... . ...|.+++|+|+ +..+++++.|
T Consensus 46 ~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 46 KLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp EEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred eeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 456677888 999999999976 8999999999999999998764 2 568999999999 8999999999
Q ss_pred CcEEEEeCCCC
Q psy16880 70 GSICMWNLNSK 80 (84)
Q Consensus 70 ~~i~~~~~~~~ 80 (84)
+.|++||+++.
T Consensus 125 ~~i~v~d~~~~ 135 (379)
T 3jrp_A 125 GKVSVVEFKEN 135 (379)
T ss_dssp SEEEEEECCTT
T ss_pred CcEEEEecCCC
Confidence 99999999876
No 75
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.60 E-value=8e-14 Score=75.02 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=69.6
Q ss_pred eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
....+..| ...|.+++|+|++..+++++.++.+.+||+..... ...+.+++|+|++..+++++.++.+++||
T Consensus 133 ~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 133 IKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEEEEECS-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeeecccC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 45566677 88899999999999999999999999999987654 56899999999999999999999999999
Q ss_pred CCCCeec
Q psy16880 77 LNSKLCD 83 (84)
Q Consensus 77 ~~~~~~~ 83 (84)
+++++.+
T Consensus 212 ~~~~~~~ 218 (337)
T 1gxr_A 212 LREGRQL 218 (337)
T ss_dssp TTTTEEE
T ss_pred CCCCceE
Confidence 9887653
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.60 E-value=2.3e-14 Score=78.18 Aligned_cols=77 Identities=14% Similarity=0.415 Sum_probs=68.8
Q ss_pred eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
.+..+.+| ...|.+++|+|++..+++++.++.+.+||+..... ...+.+++|+|++..+++++.++.+++
T Consensus 44 ~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 44 QVHELKEH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp EEEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred eeeeecCC-CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 67778888 99999999999999999999999999999976542 568999999999999999999999999
Q ss_pred EeCCCCe
Q psy16880 75 WNLNSKL 81 (84)
Q Consensus 75 ~~~~~~~ 81 (84)
||++..+
T Consensus 123 ~d~~~~~ 129 (372)
T 1k8k_C 123 CYFEQEN 129 (372)
T ss_dssp EEEETTT
T ss_pred EEecCCC
Confidence 9987653
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.7e-14 Score=77.04 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=71.0
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCC-----
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDD----- 69 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~----- 69 (84)
+++.+..+.+| .+.|.+++|+|++..+++++.++.+.+||+..... ...+.+++|+|++..+++++.+
T Consensus 63 ~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 63 NGERLGTLDGH-TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp TCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred Cchhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 36778888888 99999999999999999999999999999987665 6789999999999999999888
Q ss_pred CcEEEEeCCCC
Q psy16880 70 GSICMWNLNSK 80 (84)
Q Consensus 70 ~~i~~~~~~~~ 80 (84)
+.+.+|++...
T Consensus 142 g~i~~~d~~~~ 152 (369)
T 3zwl_B 142 GSINIYEIERD 152 (369)
T ss_dssp CEEEEEEEEEC
T ss_pred CEEEEEEecCC
Confidence 99999998654
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.59 E-value=4.3e-14 Score=78.88 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=64.2
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEe--CCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISG--GDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSI 72 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i 72 (84)
|+++..+.. ...+.++.|++++..++++ ..++.+.+||+.+... ...|.+++|+|++..+++++.|++|
T Consensus 311 ~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 311 GACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp TEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred cccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 455555554 4678899999999887765 4789999999987665 5689999999999999999999999
Q ss_pred EEEeCCCCe
Q psy16880 73 CMWNLNSKL 81 (84)
Q Consensus 73 ~~~~~~~~~ 81 (84)
++||+....
T Consensus 389 riWdv~~~~ 397 (420)
T 4gga_A 389 RLWRCFELD 397 (420)
T ss_dssp EEECCSCSS
T ss_pred EEEECCCCC
Confidence 999986543
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.59 E-value=2.6e-14 Score=82.04 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=67.1
Q ss_pred CceEEEecc-CCCcCEEEEEEcc----------CCCEEEEeCCCCcEEEEeCCCC-CC-------CCCEEEEEEccCCCE
Q psy16880 2 GSIIHTFVH-SNNSAVRSISFCS----------KQHTLISGGDDGSICMWNLNSK-LC-------DSAVRSISFCSKQRT 62 (84)
Q Consensus 2 g~~~~~~~~-~~~~~v~~~~~~~----------~~~~l~~~~~~~~~~~~d~~~~-~~-------~~~v~~~~~~~~~~~ 62 (84)
++++..+.+ | ...|.+++|+| ++.+|++++.|+.+++||+... .. ...|.+++|+|+++
T Consensus 520 ~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~- 597 (615)
T 1pgu_A 520 REVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST- 597 (615)
T ss_dssp TEEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-
T ss_pred CcceeEeecCC-CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-
Confidence 566677777 7 89999999999 9999999999999999999876 33 57899999999999
Q ss_pred EEEecCCCcEEEEeCCC
Q psy16880 63 LISGGDDGSICMWNLNS 79 (84)
Q Consensus 63 ~~~~~~~~~i~~~~~~~ 79 (84)
+++++.|+.|++|++..
T Consensus 598 l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 598 LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTSCEEEEEEC-
T ss_pred eEEecCCceEEEEeeec
Confidence 99999999999999864
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.59 E-value=4.6e-14 Score=77.88 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=32.6
Q ss_pred CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
...|.+++|+|+++++++++.|+.|++||+++++++
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS 304 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence 356899999999999999999999999999988764
No 81
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.59 E-value=3.4e-14 Score=77.17 Aligned_cols=71 Identities=18% Similarity=0.355 Sum_probs=63.4
Q ss_pred CcCEEEEEEccC----CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCCC
Q psy16880 13 NSAVRSISFCSK----QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 13 ~~~v~~~~~~~~----~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
...|.+++|+|+ +.++++++.++.+.+||+.+... ...|.+++|+| ++..+++++.|+.|++||++++
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 577999999998 66999999999999999987655 67899999999 8999999999999999999887
Q ss_pred eec
Q psy16880 81 LCD 83 (84)
Q Consensus 81 ~~~ 83 (84)
+.+
T Consensus 149 ~~~ 151 (366)
T 3k26_A 149 TLV 151 (366)
T ss_dssp EEE
T ss_pred eEE
Confidence 653
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.59 E-value=6e-14 Score=86.02 Aligned_cols=82 Identities=20% Similarity=0.377 Sum_probs=72.6
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEcc--CCCEEEEecCCCc
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS--KQRTLISGGDDGS 71 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~--~~~~~~~~~~~~~ 71 (84)
+++.+..+.+| .+.|.+++|+|++..+++++.++.+.+||+.++.. ...|.+++|+| +...+++++.|+.
T Consensus 646 ~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 646 TGEKLLDIKAH-EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp TCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CCCEEEEeccC-CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 46778888888 99999999999999999999999999999987765 67899999999 5568899999999
Q ss_pred EEEEeCCCCeec
Q psy16880 72 ICMWNLNSKLCD 83 (84)
Q Consensus 72 i~~~~~~~~~~~ 83 (84)
|++||+++++++
T Consensus 725 v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 725 LKLWDLNQKECR 736 (1249)
T ss_dssp EEEEETTSSSEE
T ss_pred EEEEECCCcchh
Confidence 999999887653
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.59 E-value=7.4e-14 Score=80.19 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=71.3
Q ss_pred CceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-------CC---CEEEEEEccC-CCEEEEecCC
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-------DS---AVRSISFCSK-QRTLISGGDD 69 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-------~~---~v~~~~~~~~-~~~~~~~~~~ 69 (84)
++.+..+.+| ...|.+++|+|++. .+++++.++.+.+||...... .. .|.+++|+|+ +..+++++.+
T Consensus 150 ~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 150 GNSLGEVSGH-SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp CCEEEECCSC-SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CCcceeeecC-CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 4567788888 99999999999987 899999999999999876654 44 7999999999 9999999999
Q ss_pred CcEEEEeCCCCeec
Q psy16880 70 GSICMWNLNSKLCD 83 (84)
Q Consensus 70 ~~i~~~~~~~~~~~ 83 (84)
+.|++||+++++.+
T Consensus 229 g~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 229 RKISCFDGKSGEFL 242 (615)
T ss_dssp CCEEEEETTTCCEE
T ss_pred CeEEEEECCCCCEe
Confidence 99999999877653
No 84
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.58 E-value=2.4e-14 Score=77.41 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=66.3
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC----C------CCCEEEEEEccCCC-EEEEecCCCcEEE
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL----C------DSAVRSISFCSKQR-TLISGGDDGSICM 74 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~----~------~~~v~~~~~~~~~~-~~~~~~~~~~i~~ 74 (84)
...+.| .+.|.+++|+|++..+++++.++.+.+||+.... . ...|.+++|+|++. .+++++.++.|++
T Consensus 5 ~~~~~h-~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 5 QIEQAP-KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp ECSSCC-SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred ecccCC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 334566 8999999999999999999999999999998766 2 67899999999999 9999999999999
Q ss_pred EeC-CCCe
Q psy16880 75 WNL-NSKL 81 (84)
Q Consensus 75 ~~~-~~~~ 81 (84)
|++ .+++
T Consensus 84 wd~~~~~~ 91 (342)
T 1yfq_A 84 VDLIGSPS 91 (342)
T ss_dssp ECSSSSSS
T ss_pred EEeccCCc
Confidence 999 7654
No 85
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.6e-14 Score=81.24 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=66.6
Q ss_pred EeccCCCcCEEEEEEccC---CCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 7 TFVHSNNSAVRSISFCSK---QHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
.+.+| .+.|.+++|+|+ +..+++++.++.+++||+..... ...|.+++|+ ++..+++++.|+.|++|
T Consensus 190 ~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vw 267 (450)
T 2vdu_B 190 PILGH-VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAW 267 (450)
T ss_dssp CSEEC-SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEE
T ss_pred eeecc-cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEE
Confidence 45567 889999999999 89999999999999999986654 5689999999 99999999999999999
Q ss_pred eCCCCeec
Q psy16880 76 NLNSKLCD 83 (84)
Q Consensus 76 ~~~~~~~~ 83 (84)
|+++++++
T Consensus 268 d~~~~~~~ 275 (450)
T 2vdu_B 268 DWKTGKNL 275 (450)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEe
Confidence 99987754
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.57 E-value=9.4e-14 Score=77.99 Aligned_cols=79 Identities=18% Similarity=0.530 Sum_probs=69.3
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEc--cCCCEEEEecCCCc
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFC--SKQRTLISGGDDGS 71 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~--~~~~~~~~~~~~~~ 71 (84)
+++++..+.+| .+.|.+++|++++ .+++++.|+.+.+||+.+... ...|.+++|+ +++..+++++.|+.
T Consensus 151 ~~~~~~~~~~h-~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 151 NKKFLLQLSGH-DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TTEEEEEECCC-SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CCcEEEEEeCC-CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 36778888888 9999999999877 999999999999999987654 6789999998 56788999999999
Q ss_pred EEEEeCCCCe
Q psy16880 72 ICMWNLNSKL 81 (84)
Q Consensus 72 i~~~~~~~~~ 81 (84)
+++||+++..
T Consensus 229 i~vwd~~~~~ 238 (464)
T 3v7d_B 229 LHVWKLPKES 238 (464)
T ss_dssp EEEEECCCCC
T ss_pred EEEeeCCCCc
Confidence 9999998764
No 87
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-13 Score=76.42 Aligned_cols=79 Identities=20% Similarity=0.417 Sum_probs=69.3
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
+++..+..| ...|.+++|+|++..+++++.++.+.+||+..... ...+.+++|+|++ .+++++.++.|++|
T Consensus 238 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 238 TPTGKLIGH-HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp SCSEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred ceeeeeccC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 445567777 89999999999999999999999999999987654 5689999999999 89999999999999
Q ss_pred eCCCCeec
Q psy16880 76 NLNSKLCD 83 (84)
Q Consensus 76 ~~~~~~~~ 83 (84)
|+++++.+
T Consensus 316 d~~~~~~~ 323 (425)
T 1r5m_A 316 SLKQNTLL 323 (425)
T ss_dssp ETTTTEEE
T ss_pred ECCCCcEe
Confidence 99887654
No 88
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.57 E-value=7.5e-14 Score=77.35 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=66.6
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCE--------------------
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAV-------------------- 51 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v-------------------- 51 (84)
++.+..+.+| .+.|.+++|+|++..+++++.++.+++||+..... ...+
T Consensus 171 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 171 GSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp CCCCEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CcCceEEcCC-CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 4566778888 99999999999999999999999999999986644 2233
Q ss_pred -EEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 52 -RSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 52 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
.+++|+|++..+++++.++.|++||+++++.
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 4455578889999999999999999987664
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.57 E-value=1.1e-13 Score=74.10 Aligned_cols=69 Identities=23% Similarity=0.339 Sum_probs=59.9
Q ss_pred CcCEEEEEEccCCCEEEEe--CCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 13 NSAVRSISFCSKQHTLISG--GDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~--~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
...+..+.|.+.+..++++ +.++.+.+||+.+... ...|.+++|+|+++.+++++.|+.|++||+.+..
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 5678899999988877654 5799999999987765 6789999999999999999999999999997654
No 90
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.8e-14 Score=79.65 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=67.1
Q ss_pred eEEEec-cCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCC-CEEEEecCCCcEE
Q psy16880 4 IIHTFV-HSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQ-RTLISGGDDGSIC 73 (84)
Q Consensus 4 ~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~-~~~~~~~~~~~i~ 73 (84)
++..+. +| ...|.+++|+| ++.++++++.++.+.+||+..... ...|.+++|+|++ ..+++++.|+.|+
T Consensus 253 ~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 253 PLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp CSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred CcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 444555 67 88999999999 899999999999999999987655 5679999999998 8999999999999
Q ss_pred EEeCCCCe
Q psy16880 74 MWNLNSKL 81 (84)
Q Consensus 74 ~~~~~~~~ 81 (84)
+|++.+..
T Consensus 332 iw~~~~~~ 339 (416)
T 2pm9_A 332 VQTLQNLT 339 (416)
T ss_dssp EEESCCCC
T ss_pred EEEccCCC
Confidence 99997654
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.56 E-value=2.3e-13 Score=75.51 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=68.6
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
++.++.+.+| ...|.+++| ++..+++++.++.+.+||+..... ...|.+++|+|++..+++++.|+.|+
T Consensus 166 ~~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 166 QTKLRTMAGH-QARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp CCEEEEECCC-SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CeEEEEecCC-CCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 5677888888 999999999 568999999999999999984433 67899999999999999999999999
Q ss_pred EEeCCCCee
Q psy16880 74 MWNLNSKLC 82 (84)
Q Consensus 74 ~~~~~~~~~ 82 (84)
+||+++.++
T Consensus 243 iwd~~~~~~ 251 (401)
T 4aez_A 243 IWDARSSIP 251 (401)
T ss_dssp EEETTCSSE
T ss_pred EccCCCCCc
Confidence 999987654
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.56 E-value=3.7e-14 Score=77.75 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=65.3
Q ss_pred EEEecc-CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------CCCEEEEEEccC
Q psy16880 5 IHTFVH-SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------DSAVRSISFCSK 59 (84)
Q Consensus 5 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------~~~v~~~~~~~~ 59 (84)
...+.. | ...|.+++|+|++..+++++.++.+++||+..... ...|.+++|+|+
T Consensus 138 ~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 138 SKHLKRPL-RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS 216 (377)
T ss_dssp CEEECSSC-CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT
T ss_pred eeEeeccc-CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC
Confidence 456666 6 89999999999999999999999999999853210 456999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCCee
Q psy16880 60 QRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
++.+++++.|+.|++||+++++.
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTTS
T ss_pred CCEEEEEeCCCcEEEEECCCCCC
Confidence 99999999999999999987654
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.2e-14 Score=82.57 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=62.3
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEE--EEccCC-CEEEEecCCCcEEE
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSI--SFCSKQ-RTLISGGDDGSICM 74 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~--~~~~~~-~~~~~~~~~~~i~~ 74 (84)
..+.+| ...|.+++|+++ ..|++|+.|+.+++||+..... ...|.++ .|+|++ .++++++.|++|++
T Consensus 260 ~~l~~h-~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 260 LTLSLA-DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp EEECCT-TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred EEEEcC-CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 466777 899999999985 4899999999999999975422 5679998 567887 88999999999999
Q ss_pred EeCCCCe
Q psy16880 75 WNLNSKL 81 (84)
Q Consensus 75 ~~~~~~~ 81 (84)
||+++++
T Consensus 338 WD~~~~~ 344 (524)
T 2j04_B 338 FNPKDIA 344 (524)
T ss_dssp ECGGGHH
T ss_pred EECCCCC
Confidence 9987654
No 94
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.2e-14 Score=76.99 Aligned_cols=80 Identities=25% Similarity=0.517 Sum_probs=70.2
Q ss_pred ceEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCC------C----------CCCEEEEEEccC-CCEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKL------C----------DSAVRSISFCSK-QRTLI 64 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~------~----------~~~v~~~~~~~~-~~~~~ 64 (84)
+.+..+.+| .+.|.+++|+|+ +..+++++.++.+.+||+.... . ...|.+++|+|+ +..++
T Consensus 104 ~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 182 (416)
T 2pm9_A 104 NSMARFSNH-SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA 182 (416)
T ss_dssp CEEEECCCS-SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEE
T ss_pred cchhhccCC-ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEE
Confidence 367788888 999999999998 8999999999999999998765 2 567999999998 78999
Q ss_pred EecCCCcEEEEeCCCCeec
Q psy16880 65 SGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 65 ~~~~~~~i~~~~~~~~~~~ 83 (84)
+++.++.|++||+++++.+
T Consensus 183 ~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 183 SAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp EESSSSCEEEEETTTTEEE
T ss_pred EEcCCCCEEEEECCCCCcc
Confidence 9999999999999887653
No 95
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.5e-14 Score=84.08 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=64.6
Q ss_pred ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
.+| .+.|.+++|+|++.+|++|+.|+.+++||...... ...|.+++|+| +..+++++.|+.|++||+.++++
T Consensus 14 ~gh-~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 14 YGM-SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EEC-SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred cCC-CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 467 89999999999999999999999999999875543 56799999999 77899999999999999988765
Q ss_pred c
Q psy16880 83 D 83 (84)
Q Consensus 83 ~ 83 (84)
+
T Consensus 92 ~ 92 (902)
T 2oaj_A 92 L 92 (902)
T ss_dssp E
T ss_pred E
Confidence 3
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.55 E-value=1.3e-13 Score=76.58 Aligned_cols=80 Identities=29% Similarity=0.508 Sum_probs=67.3
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCC-CEEEEec--CCCcE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQ-RTLISGG--DDGSI 72 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~-~~~~~~~--~~~~i 72 (84)
..+..+.+| .+.|.+++|+|++..+++++.++.+.+||+..... ...|.+++|+|++ ..+++++ .|+.|
T Consensus 208 ~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 208 HQIGTLQGH-SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp CEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred ceeeEEcCC-CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 456677788 99999999999999999999999999999987654 5689999999966 4555554 69999
Q ss_pred EEEeCCCCeec
Q psy16880 73 CMWNLNSKLCD 83 (84)
Q Consensus 73 ~~~~~~~~~~~ 83 (84)
++||+++++++
T Consensus 287 ~i~d~~~~~~~ 297 (401)
T 4aez_A 287 HFWNAATGARV 297 (401)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCCEE
Confidence 99999887654
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.55 E-value=2.5e-13 Score=75.79 Aligned_cols=79 Identities=18% Similarity=0.447 Sum_probs=58.4
Q ss_pred CCceEEEec--cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------------
Q psy16880 1 DGSIIHTFV--HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------------- 47 (84)
Q Consensus 1 ~g~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------------- 47 (84)
+|++++.++ +| ...|.+++|+|++.+|++|+.|+.+.+||+.+...
T Consensus 134 tg~~~~~~~~~~~-~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~ 212 (420)
T 4gga_A 134 SGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH 212 (420)
T ss_dssp TCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred CCCEEEEEEecCC-CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCcee
Confidence 466666554 45 67899999999999999999999999999986543
Q ss_pred -----------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880 48 -----------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 48 -----------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
...+..+.+.|++..+++++.|+.+++|+..++
T Consensus 213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 334556666666666666666666666666543
No 98
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.3e-13 Score=75.04 Aligned_cols=71 Identities=17% Similarity=0.410 Sum_probs=62.5
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.+.|.+++|+|++..|++++.++.+.+||...... ...|.+++|+|++..+++++.++.+++||+.+++.+
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 77999999999999999999999999999443322 668999999999999999999999999999887653
No 99
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.54 E-value=3.2e-13 Score=75.86 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=68.6
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
++++..+.+| ...|.+++|+|++..+++++.++.+++||+.+... ...|.+++|+ +..+++++.|+.|++
T Consensus 300 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~v 376 (464)
T 3v7d_B 300 MKCLYILSGH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRG 376 (464)
T ss_dssp TEEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred CcEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEE
Confidence 5677888888 99999999999999999999999999999987655 5679999997 468999999999999
Q ss_pred EeCCCCee
Q psy16880 75 WNLNSKLC 82 (84)
Q Consensus 75 ~~~~~~~~ 82 (84)
||+++.+.
T Consensus 377 wd~~~~~~ 384 (464)
T 3v7d_B 377 WDANDYSR 384 (464)
T ss_dssp EETTTCCE
T ss_pred EECCCCce
Confidence 99987653
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.54 E-value=9.8e-14 Score=82.36 Aligned_cols=77 Identities=17% Similarity=0.365 Sum_probs=69.1
Q ss_pred ceEEEeccCCCcCEEEEEEccC--CCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC--CCEEEEecCC
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSK--QHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK--QRTLISGGDD 69 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~--~~~~~~~~~~ 69 (84)
+.+..+.+| .+.|.+++|+++ +..+++++.|+.+.+||+..... ...|.+++|+|+ +..+++++.|
T Consensus 44 ~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 44 KLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp EEEEEECCC-SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ccceeccCC-cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 456778888 999999999987 89999999999999999987642 678999999999 9999999999
Q ss_pred CcEEEEeCCCC
Q psy16880 70 GSICMWNLNSK 80 (84)
Q Consensus 70 ~~i~~~~~~~~ 80 (84)
+.|++||++++
T Consensus 123 g~I~vwdl~~~ 133 (753)
T 3jro_A 123 GKVSVVEFKEN 133 (753)
T ss_dssp SEEEEEECCSS
T ss_pred CcEEEEEeecC
Confidence 99999999876
No 101
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-13 Score=83.24 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=64.0
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------CCCEEEEEEc-----cCC---C
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------DSAVRSISFC-----SKQ---R 61 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~-----~~~---~ 61 (84)
+++..+++| .+.|.+++|+|+| +|++|+.|+.+++||+..... ...|.+++|+ |++ .
T Consensus 566 ~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHAN-KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECCC-SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred ceeEEEEcC-CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 357788888 9999999999999 999999999999999876421 3459999999 875 7
Q ss_pred EEEEecCCCcEEEEeC
Q psy16880 62 TLISGGDDGSICMWNL 77 (84)
Q Consensus 62 ~~~~~~~~~~i~~~~~ 77 (84)
.+++++.|++|++||+
T Consensus 644 ~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEETTSEEEEEEE
T ss_pred EEEEEecCCcEEEEEE
Confidence 9999999999999998
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.2e-14 Score=84.39 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=62.9
Q ss_pred EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC--CCEEEEecCCCcEE
Q psy16880 5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK--QRTLISGGDDGSIC 73 (84)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~--~~~~~~~~~~~~i~ 73 (84)
+..+++| .+.|.+++|+|++..+++++.++.+.+||+..... ...|.+++|+|+ +..+++++.|+.|+
T Consensus 2 ~~~l~gH-~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAH-NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------C-CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccC-cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 3567788 99999999999999999999999999999874322 568999999987 89999999999999
Q ss_pred EEeCCCCe
Q psy16880 74 MWNLNSKL 81 (84)
Q Consensus 74 ~~~~~~~~ 81 (84)
+||+.+++
T Consensus 81 vwd~~~~~ 88 (753)
T 3jro_A 81 IWKEENGR 88 (753)
T ss_dssp EEEEETTE
T ss_pred EEECCCCc
Confidence 99988764
No 103
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=75.13 Aligned_cols=73 Identities=12% Similarity=0.280 Sum_probs=61.5
Q ss_pred ccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC--------------------------CCCEEEEEEccCCC
Q psy16880 9 VHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC--------------------------DSAVRSISFCSKQR 61 (84)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~--------------------------~~~v~~~~~~~~~~ 61 (84)
..| ...|.+++|+|++. ++++++.++.+.+||+..... ...|.+++|+|+++
T Consensus 256 ~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 256 KAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR 334 (357)
T ss_dssp ECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred CCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence 367 89999999999988 899999999999999874311 56799999999999
Q ss_pred EEE-EecCCCcEEEEeCCCCee
Q psy16880 62 TLI-SGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 62 ~~~-~~~~~~~i~~~~~~~~~~ 82 (84)
.++ +++.|+.|++|++.+.+.
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TEEEEEETTSEEEEEEECC---
T ss_pred eEEEEecCCCcEEEEECCCccc
Confidence 888 799999999999987654
No 104
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.53 E-value=1.2e-13 Score=75.28 Aligned_cols=76 Identities=14% Similarity=0.327 Sum_probs=67.4
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM 74 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~ 74 (84)
++++..+..| ...|.+++|+|++..+++++.++.+.+||+..... ...+.+++|+|++.+++++ .|+.+++
T Consensus 192 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i 269 (372)
T 1k8k_C 192 GELMFESSSS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVL 269 (372)
T ss_dssp TCEEEECCCC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred hhheEecCCC-CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEE
Confidence 5677788888 89999999999999999999999999999986655 5689999999999877777 8999999
Q ss_pred EeCCC
Q psy16880 75 WNLNS 79 (84)
Q Consensus 75 ~~~~~ 79 (84)
|++++
T Consensus 270 ~~~~~ 274 (372)
T 1k8k_C 270 FTYDS 274 (372)
T ss_dssp EEEET
T ss_pred EEccC
Confidence 99876
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-13 Score=79.85 Aligned_cols=69 Identities=9% Similarity=0.206 Sum_probs=59.7
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCC------CCC---CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNS------KLC---DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~------~~~---~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
...|.+++|+|+|..+++++.++.+.+||... ... ...+.+++|+|+++.+++++.|++|++|++.+++
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 67899999999999999999999999999321 111 3369999999999999999999999999998764
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.53 E-value=2.1e-13 Score=76.02 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=62.8
Q ss_pred ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC------------C---CCCEEEEEEccCC-CEEEEecCCCcE
Q psy16880 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL------------C---DSAVRSISFCSKQ-RTLISGGDDGSI 72 (84)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~------------~---~~~v~~~~~~~~~-~~~~~~~~~~~i 72 (84)
.+| ...|.+++|+|++..++++ .|+.+.+||+.... . ...|.+++|+|++ ..+++++.|+.|
T Consensus 174 ~~h-~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 174 NAH-TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp SCC-SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred cCC-CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 567 8999999999999999998 79999999998321 1 5679999999998 899999999999
Q ss_pred EEEeCCCCee
Q psy16880 73 CMWNLNSKLC 82 (84)
Q Consensus 73 ~~~~~~~~~~ 82 (84)
++||+++++.
T Consensus 252 ~iwd~~~~~~ 261 (447)
T 3dw8_B 252 RLCDMRASAL 261 (447)
T ss_dssp EEEETTTCSS
T ss_pred EEEECcCCcc
Confidence 9999987653
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.53 E-value=3.4e-13 Score=75.16 Aligned_cols=73 Identities=15% Similarity=0.348 Sum_probs=63.2
Q ss_pred eccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-----------C------------CCEEEEEEccCCCEE
Q psy16880 8 FVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-----------D------------SAVRSISFCSKQRTL 63 (84)
Q Consensus 8 ~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-----------~------------~~v~~~~~~~~~~~~ 63 (84)
+.+| ...|.+++|+|++ ..+++++.++.+++||++.... . ..|.+++|+|++..+
T Consensus 222 ~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 300 (447)
T 3dw8_B 222 MEEL-TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYM 300 (447)
T ss_dssp GGGC-CCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEE
T ss_pred cccc-CcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEE
Confidence 4567 8899999999998 9999999999999999976542 2 289999999999999
Q ss_pred EEecCCCcEEEEeCCC-Cee
Q psy16880 64 ISGGDDGSICMWNLNS-KLC 82 (84)
Q Consensus 64 ~~~~~~~~i~~~~~~~-~~~ 82 (84)
++++. +.|++||++. +++
T Consensus 301 ~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 301 MTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp EEEES-SEEEEEETTCCSSC
T ss_pred EEeeC-CeEEEEeCCCCccc
Confidence 99988 9999999986 544
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.53 E-value=4.9e-13 Score=72.30 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=64.5
Q ss_pred ccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCC------CC-------CC---------CEEEEEEccCCCEEEE
Q psy16880 9 VHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSK------LC-------DS---------AVRSISFCSKQRTLIS 65 (84)
Q Consensus 9 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~------~~-------~~---------~v~~~~~~~~~~~~~~ 65 (84)
..+ ...+.+++|+| ++..+++++.++.+.+||+... .. .. .|.+++|+|++..+++
T Consensus 190 ~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 268 (342)
T 1yfq_A 190 SGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT 268 (342)
T ss_dssp CSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred cCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence 345 77899999999 9999999999999999999765 22 22 8999999999999999
Q ss_pred ecCCCcEEEEeCCCCeec
Q psy16880 66 GGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 66 ~~~~~~i~~~~~~~~~~~ 83 (84)
++.|+.|++||+.+++.+
T Consensus 269 ~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 269 AGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp EETTSCEEEEETTTTEEE
T ss_pred ecCCceEEEEcCccHhHh
Confidence 999999999999987754
No 109
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.52 E-value=1.6e-13 Score=74.37 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=62.5
Q ss_pred EEeccCCCcCEEEEEEccCCCEE-EEeCC---CCcEEEEeCCCCCC--------CCCEEEEEEccC---CCEEEEecCCC
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTL-ISGGD---DGSICMWNLNSKLC--------DSAVRSISFCSK---QRTLISGGDDG 70 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~---~~~~~~~d~~~~~~--------~~~v~~~~~~~~---~~~~~~~~~~~ 70 (84)
+.+++| .+.|.+++|+|++..+ ++++. ++.+.+||+..... ...|.+++|+|+ +..+++++.|+
T Consensus 12 ~~~~~h-~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 12 HIQKGF-NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEC-SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhccCC-CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 344667 9999999999988654 56665 89999999987654 678999999998 68999999999
Q ss_pred cEEEEeCCCCe
Q psy16880 71 SICMWNLNSKL 81 (84)
Q Consensus 71 ~i~~~~~~~~~ 81 (84)
.|++||+.+++
T Consensus 91 ~i~iwd~~~~~ 101 (357)
T 3i2n_A 91 NLHIWNLEAPE 101 (357)
T ss_dssp CEEEECTTSCS
T ss_pred eEEEEeCCCCC
Confidence 99999998765
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.5e-13 Score=78.92 Aligned_cols=65 Identities=11% Similarity=0.276 Sum_probs=57.6
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
.+.+++|+|+|+.|++|+.|+.+++||+..+.. ...|.+++|+|++ +++++.|+.+++|+
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd 208 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMT 208 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEEC
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEE
Confidence 599999999999999999999999999987631 3489999999998 77888899999999
Q ss_pred CCCCe
Q psy16880 77 LNSKL 81 (84)
Q Consensus 77 ~~~~~ 81 (84)
+.+++
T Consensus 209 ~~~~~ 213 (588)
T 2j04_A 209 VSASS 213 (588)
T ss_dssp CCSSS
T ss_pred CCCCc
Confidence 97665
No 111
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.51 E-value=1.7e-13 Score=75.39 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=66.1
Q ss_pred eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC------C-------CCCEEEEEEccC----C---CEE
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL------C-------DSAVRSISFCSK----Q---RTL 63 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~------~-------~~~v~~~~~~~~----~---~~~ 63 (84)
....+++| .+.|.+++|+| ..|++++.++.+.+||+.... . ...|.+++|+|+ + ..+
T Consensus 8 ~~~~~~~h-~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 8 TANAGKAH-DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEESSCS-SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhh-hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 35567788 99999999988 899999999999999998776 2 678999999999 8 899
Q ss_pred EEecCCCcEEEEeCCCCe
Q psy16880 64 ISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 64 ~~~~~~~~i~~~~~~~~~ 81 (84)
++++.|+.|++|++.+++
T Consensus 85 ~s~~~dg~i~iw~~~~~~ 102 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITRED 102 (397)
T ss_dssp EEEETTSCEEEEEEEECT
T ss_pred EEEcCCCCEEEEEccCCc
Confidence 999999999999987654
No 112
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4e-14 Score=81.52 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=64.6
Q ss_pred eEEEeccCCCcCEEEE--EEccCC-CEEEEeCCCCcEEEEeCCCCCC--------C-CCEEEEEEccCCCEEEEecCCCc
Q psy16880 4 IIHTFVHSNNSAVRSI--SFCSKQ-HTLISGGDDGSICMWNLNSKLC--------D-SAVRSISFCSKQRTLISGGDDGS 71 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~~~~~~~~d~~~~~~--------~-~~v~~~~~~~~~~~~~~~~~~~~ 71 (84)
+...+.+| .+.|.++ .|++++ .+|++++.|+.+++||++.... . ..|.+++|+|++..+++++.|+.
T Consensus 300 ~~~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~t 378 (524)
T 2j04_B 300 PSFYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS 378 (524)
T ss_dssp CSEEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSE
T ss_pred ceEEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCc
Confidence 34456778 8999999 567777 8999999999999999976433 1 24788999999999999999999
Q ss_pred EEEEeCCCCee
Q psy16880 72 ICMWNLNSKLC 82 (84)
Q Consensus 72 i~~~~~~~~~~ 82 (84)
|++||++++.+
T Consensus 379 v~lwd~~~~~~ 389 (524)
T 2j04_B 379 LRAVPSRAAFA 389 (524)
T ss_dssp EEEEETTCTTC
T ss_pred EEEEECccccc
Confidence 99999987654
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.51 E-value=4.1e-13 Score=75.24 Aligned_cols=77 Identities=18% Similarity=0.375 Sum_probs=66.5
Q ss_pred ceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEcc-CCCEEEEe
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCS-KQRTLISG 66 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~-~~~~~~~~ 66 (84)
+++..+.+| ...|.+++|+|++. .|++++.++.+.+||+..... ...|.+++|+| ++..++++
T Consensus 172 ~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 172 QPDLRLRGH-QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCSEEEECC-SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCcEEecCC-CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 456677788 88999999999888 999999999999999986211 56799999999 67889999
Q ss_pred cCCCcEEEEeCCCC
Q psy16880 67 GDDGSICMWNLNSK 80 (84)
Q Consensus 67 ~~~~~i~~~~~~~~ 80 (84)
+.++.|++||+++.
T Consensus 251 ~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 251 ADDQKLMIWDTRNN 264 (430)
T ss_dssp ETTSEEEEEETTCS
T ss_pred eCCCeEEEEECCCC
Confidence 99999999999876
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.51 E-value=5.9e-13 Score=73.52 Aligned_cols=54 Identities=22% Similarity=0.482 Sum_probs=46.0
Q ss_pred CCCEEEEeCCCCcEEEEeCCCCCC-------C-CCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880 24 KQHTLISGGDDGSICMWNLNSKLC-------D-SAVRSISFCSKQRTLISGGDDGSICMWNL 77 (84)
Q Consensus 24 ~~~~l~~~~~~~~~~~~d~~~~~~-------~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (84)
++..+++++.|+.+++||+.++.. . ..+..++|+|+++++++++.|++|++||+
T Consensus 294 sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 366789999999999999998765 1 23456899999999999999999999985
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=5.5e-13 Score=74.99 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=67.1
Q ss_pred CceEEEec--cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccC---CCEEEE
Q psy16880 2 GSIIHTFV--HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSK---QRTLIS 65 (84)
Q Consensus 2 g~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~---~~~~~~ 65 (84)
++.+..+. .+ ...|.+++|+|++..+++++.++.+.+|++..... ...|.+++|+|+ +..+++
T Consensus 137 ~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 215 (450)
T 2vdu_B 137 KNVLKLRKRFCF-SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT 215 (450)
T ss_dssp SSCEEEEEEEEC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE
T ss_pred CceeeeeecccC-CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE
Confidence 44556655 44 67899999999999999999999999999865431 567999999999 889999
Q ss_pred ecCCCcEEEEeCCCCee
Q psy16880 66 GGDDGSICMWNLNSKLC 82 (84)
Q Consensus 66 ~~~~~~i~~~~~~~~~~ 82 (84)
++.|+.|++||++++++
T Consensus 216 ~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 216 SDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EETTSCEEEEEESCTTC
T ss_pred EcCCCcEEEEECCCCce
Confidence 99999999999987654
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.50 E-value=2.2e-13 Score=75.22 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=59.1
Q ss_pred CceEEEeccCCCcCEEEEEEcc---CCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEE-----
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCS---KQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTL----- 63 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~----- 63 (84)
|+.+..+..| ...+..++|++ ++..|++++.|+.+++||+.++.. ...+.+++|+|++..+
T Consensus 168 G~~~~s~~~~-~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~ 246 (356)
T 2w18_A 168 GGGKENQFLM-PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH 246 (356)
T ss_dssp SCEEEEEEEC-CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred CceeeeeccC-CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence 4555555555 55666667777 568899999999999999998765 1246677899999876
Q ss_pred -------EEecCCCcEEEEeCCCCeec
Q psy16880 64 -------ISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 64 -------~~~~~~~~i~~~~~~~~~~~ 83 (84)
++++.|+++++||+.+++++
T Consensus 247 ~~~~w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 247 PCAKESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp -----------CCEEEEEEETTTTEEE
T ss_pred CCCcceeeccCCCcEEEEEECCCCEEE
Confidence 45778899999999988753
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.48 E-value=1.3e-12 Score=73.22 Aligned_cols=73 Identities=19% Similarity=0.439 Sum_probs=63.6
Q ss_pred EEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCC---C-------CCCEEEEEEccCCC-EEEEecCCCcEE
Q psy16880 6 HTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKL---C-------DSAVRSISFCSKQR-TLISGGDDGSIC 73 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~---~-------~~~v~~~~~~~~~~-~~~~~~~~~~i~ 73 (84)
..+..| ...|.+++|+| ++..|++++.++.+.+||++... . ...|.+++|+|++. .+++++.|+.|+
T Consensus 225 ~~~~~h-~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~ 303 (430)
T 2xyi_A 225 NIFTGH-TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303 (430)
T ss_dssp EEECCC-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eeecCC-CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEE
Confidence 455667 88999999999 67899999999999999998763 2 56899999999886 688999999999
Q ss_pred EEeCCC
Q psy16880 74 MWNLNS 79 (84)
Q Consensus 74 ~~~~~~ 79 (84)
+||+++
T Consensus 304 vwd~~~ 309 (430)
T 2xyi_A 304 LWDLRN 309 (430)
T ss_dssp EEETTC
T ss_pred EEeCCC
Confidence 999986
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.46 E-value=1.2e-12 Score=72.70 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=62.1
Q ss_pred CceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC--------------------------------C
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC--------------------------------D 48 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~--------------------------------~ 48 (84)
+.++..+..| .+.+.+++|+|++ ..|++++.|+.+++||+..... .
T Consensus 176 ~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 176 EGPILAGYPL-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TEEEEEEEEC-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CceeeeecCC-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 3455666677 8899999999987 4899999999999999976533 3
Q ss_pred CCEEEEEEc-cCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 49 SAVRSISFC-SKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 49 ~~v~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
..+.++.|. |++..+++++.|+.+++||+..++
T Consensus 255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~ 288 (393)
T 4gq1_A 255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN 288 (393)
T ss_dssp SSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred ccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence 457778876 799999999999999999987654
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.46 E-value=1.1e-12 Score=72.11 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=65.2
Q ss_pred CCceEEEec-c-CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------------C
Q psy16880 1 DGSIIHTFV-H-SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------------D 48 (84)
Q Consensus 1 ~g~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------------~ 48 (84)
+++++..++ + | .+.|.+++|+|++..|++++.|+.+++||+..... .
T Consensus 227 ~~~~~~~~~~g~h-~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 227 DGVLVREFRRGLD-RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp TCCEEEEEECTTC-CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred CCcEEEEEEcCCC-CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 467788887 5 6 89999999999999999999999999999975432 0
Q ss_pred CCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (84)
.....++|++++..+++++.|+.+.+|++..
T Consensus 306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 306 VRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred CCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 1126789999999999999999999998654
No 120
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.43 E-value=4.8e-12 Score=70.91 Aligned_cols=76 Identities=18% Similarity=0.421 Sum_probs=63.9
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
+++.+..+.+| .+.|.+++| ++..+++|+.|+.+.+||+.+... ...|.+++|++ ..+++++.|+.|+
T Consensus 162 ~~~~~~~~~~h-~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~ 236 (435)
T 1p22_A 162 TLECKRILTGH-TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIA 236 (435)
T ss_dssp SCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEE
T ss_pred CCeEEEEEcCC-CCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEE
Confidence 35677888888 899999988 788999999999999999987655 56788998864 4899999999999
Q ss_pred EEeCCCCe
Q psy16880 74 MWNLNSKL 81 (84)
Q Consensus 74 ~~~~~~~~ 81 (84)
+||++++.
T Consensus 237 vwd~~~~~ 244 (435)
T 1p22_A 237 VWDMASPT 244 (435)
T ss_dssp EEECSSSS
T ss_pred EEeCCCCC
Confidence 99987654
No 121
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.43 E-value=6e-13 Score=75.08 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=59.7
Q ss_pred CcCEEEEEEccCCCEEE----EeCCCCcEEEEeCCCC--------CC----------CCCEEEEEEccC-CCEEEEecCC
Q psy16880 13 NSAVRSISFCSKQHTLI----SGGDDGSICMWNLNSK--------LC----------DSAVRSISFCSK-QRTLISGGDD 69 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~----~~~~~~~~~~~d~~~~--------~~----------~~~v~~~~~~~~-~~~~~~~~~~ 69 (84)
.+.|.+++|+|+++.|+ +++.++.+++||+... .. ...|.+++|+|+ +..+++++.|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 45799999999999999 8999999999998543 11 457999999997 7899999999
Q ss_pred CcEEEEeCCCCee
Q psy16880 70 GSICMWNLNSKLC 82 (84)
Q Consensus 70 ~~i~~~~~~~~~~ 82 (84)
+.+++||++++..
T Consensus 172 g~v~iwD~~~~~~ 184 (434)
T 2oit_A 172 GSIAVLQVTETVK 184 (434)
T ss_dssp SCEEEEEESSSEE
T ss_pred CeEEEEEcCCCcc
Confidence 9999999987643
No 122
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.39 E-value=1.6e-11 Score=68.76 Aligned_cols=78 Identities=24% Similarity=0.492 Sum_probs=63.3
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCC
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDG 70 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~ 70 (84)
+++++..+.+| ...|.+++|+ +..+++++.++.+.+||+..... ...|.+++| ++..+++++.|+
T Consensus 202 ~~~~~~~~~~h-~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg 276 (435)
T 1p22_A 202 TGEMLNTLIHH-CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR 276 (435)
T ss_dssp SCCEEEEECCC-CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred CCcEEEEEcCC-CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence 36677888888 8899999885 56899999999999999976543 557888888 567899999999
Q ss_pred cEEEEeCCCCeec
Q psy16880 71 SICMWNLNSKLCD 83 (84)
Q Consensus 71 ~i~~~~~~~~~~~ 83 (84)
.|++||+++++++
T Consensus 277 ~i~vwd~~~~~~~ 289 (435)
T 1p22_A 277 TIKVWNTSTCEFV 289 (435)
T ss_dssp EEEEEETTTCCEE
T ss_pred eEEEEECCcCcEE
Confidence 9999998877653
No 123
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.38 E-value=1.4e-11 Score=69.04 Aligned_cols=77 Identities=26% Similarity=0.611 Sum_probs=59.5
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
+++++..+.+| .+.|.+++++ +..+++++.|+.+.+||+.+... ...|.++++. +..+++++.|+.|+
T Consensus 148 ~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 148 TGKCLRTLVGH-TGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR 222 (445)
T ss_dssp TCCEEEECCCC-SSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred CCcEEEEEcCC-CCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence 35677788888 8888888886 66888888888888898876544 5567888775 45688888888888
Q ss_pred EEeCCCCee
Q psy16880 74 MWNLNSKLC 82 (84)
Q Consensus 74 ~~~~~~~~~ 82 (84)
+||++++++
T Consensus 223 ~wd~~~~~~ 231 (445)
T 2ovr_B 223 VWDIETGQC 231 (445)
T ss_dssp EEESSSCCE
T ss_pred EEECCCCcE
Confidence 888877654
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.37 E-value=3.6e-11 Score=66.20 Aligned_cols=80 Identities=5% Similarity=0.128 Sum_probs=64.6
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCCcEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDGSIC 73 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~~i~ 73 (84)
++++..+..+ ..+.+++|+|+++.+ ++++.++.+.+||..+... ...+.+++|+|+++.++ ++..++.|.
T Consensus 22 ~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 22 NKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp TEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CeEEEEeecC--CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEE
Confidence 5667777665 457899999999876 6777899999999977655 55899999999998775 555679999
Q ss_pred EEeCCCCeec
Q psy16880 74 MWNLNSKLCD 83 (84)
Q Consensus 74 ~~~~~~~~~~ 83 (84)
+||+.+++.+
T Consensus 100 v~d~~~~~~~ 109 (391)
T 1l0q_A 100 VIDTTSNTVA 109 (391)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999987653
No 125
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.37 E-value=1.4e-11 Score=69.04 Aligned_cols=73 Identities=25% Similarity=0.519 Sum_probs=32.0
Q ss_pred eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
++..+.+| ...|.++++ ++..+++++.++.+.+||+..... ...+.+++| ++..+++++.|+.|++||
T Consensus 231 ~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d 305 (445)
T 2ovr_B 231 CLHVLMGH-VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305 (445)
T ss_dssp EEEEEECC-SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCC-cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE
Confidence 33344444 444444444 344444444444444444433222 233444444 334444444455555555
Q ss_pred CCCCe
Q psy16880 77 LNSKL 81 (84)
Q Consensus 77 ~~~~~ 81 (84)
+++++
T Consensus 306 ~~~~~ 310 (445)
T 2ovr_B 306 VETGN 310 (445)
T ss_dssp TTTCC
T ss_pred CCCCC
Confidence 44433
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.36 E-value=5.1e-11 Score=65.60 Aligned_cols=81 Identities=10% Similarity=0.214 Sum_probs=65.3
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEE-EEecCCCcE
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTL-ISGGDDGSI 72 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~-~~~~~~~~i 72 (84)
+++++..+..+ ..+.+++|+|+++.+ +++..++.+.+||+.+... ...+.+++|+|+++.+ ++++.++.|
T Consensus 63 ~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 63 TNNVIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140 (391)
T ss_dssp TTEEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCeEEEEEECC--CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 35666676664 488999999999876 4566779999999987655 5678999999999877 677889999
Q ss_pred EEEeCCCCeec
Q psy16880 73 CMWNLNSKLCD 83 (84)
Q Consensus 73 ~~~~~~~~~~~ 83 (84)
.+||+.+++.+
T Consensus 141 ~~~d~~~~~~~ 151 (391)
T 1l0q_A 141 SVINTVTKAVI 151 (391)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCcEE
Confidence 99999887653
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.35 E-value=3.4e-11 Score=67.54 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=62.2
Q ss_pred eEEEeccCCCcCEEEEEEccCCCEEEEeCCCC---cEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCC--c
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDG---SICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDG--S 71 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~--~ 71 (84)
..+.+..| ...+.+++|+|+++.++.++.++ .+.+||+.++.. ...+.+++|+|+++.++ +++.++ .
T Consensus 170 ~~~~l~~~-~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 170 NQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp SCEEEEEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CCEEEeCC-CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence 34555666 78899999999999999888774 999999987655 56789999999999777 555554 4
Q ss_pred EEEEeCCCCee
Q psy16880 72 ICMWNLNSKLC 82 (84)
Q Consensus 72 i~~~~~~~~~~ 82 (84)
|.+||+.+++.
T Consensus 249 i~~~d~~~~~~ 259 (415)
T 2hqs_A 249 LYVMDLASGQI 259 (415)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCCE
Confidence 99999987653
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.33 E-value=1.7e-11 Score=68.30 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=62.3
Q ss_pred ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEE-EecCCCcEEEEeCCCC
Q psy16880 9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLI-SGGDDGSICMWNLNSK 80 (84)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ 80 (84)
.+| .+.|.+++|++++..+++++.++.+.+||+..... ...+.+++|+|++..++ +++.++.|.+||++++
T Consensus 166 ~~~-~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 166 KKK-LGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp HTT-CCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ccc-CCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 355 77899999999999999999999999999987554 55799999999998775 5557899999999887
Q ss_pred eec
Q psy16880 81 LCD 83 (84)
Q Consensus 81 ~~~ 83 (84)
+.+
T Consensus 245 ~~~ 247 (433)
T 3bws_A 245 LEI 247 (433)
T ss_dssp EEE
T ss_pred cEE
Confidence 653
No 129
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.31 E-value=1e-10 Score=65.16 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=66.2
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEec-------
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGG------- 67 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~------- 67 (84)
++.+..+..+ ...+.+++|+|++..+ ++++.++.+.+||+..... ...+.+++|+|+++.+++++
T Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 201 LAYKATVDLT-GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp CCEEEEEECS-SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred ceEEEEEcCC-CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc
Confidence 4667777777 7889999999999877 5666899999999976654 45689999999999888877
Q ss_pred -CCCcEEEEeCCCCeec
Q psy16880 68 -DDGSICMWNLNSKLCD 83 (84)
Q Consensus 68 -~~~~i~~~~~~~~~~~ 83 (84)
.++.|.+||+++++.+
T Consensus 280 ~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp SCCEEEEEEETTTTEEE
T ss_pred cCCCeEEEEECCCCcEE
Confidence 4789999999887643
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.28 E-value=1.2e-10 Score=67.45 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=66.5
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeC--CCCCC------CCCEEEEEEcc----CCCEEEEecC
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL--NSKLC------DSAVRSISFCS----KQRTLISGGD 68 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~--~~~~~------~~~v~~~~~~~----~~~~~~~~~~ 68 (84)
+++++.+++.. .. +..++++|+++++++++.++.+.+||+ .+... ...+.+++|+| +++.+++++.
T Consensus 168 t~~~~~~i~~g-~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 168 SKKIVKVIDTG-YA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp TCCEEEEEECS-TT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CceEEEEEecC-cc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc
Confidence 46777888744 33 789999999999999999999999999 55433 45689999999 9999988874
Q ss_pred -CCcEEEEeCCCCeec
Q psy16880 69 -DGSICMWNLNSKLCD 83 (84)
Q Consensus 69 -~~~i~~~~~~~~~~~ 83 (84)
++.+.+||..+.+++
T Consensus 246 ~~~~v~v~D~~t~~~~ 261 (543)
T 1nir_A 246 WPPQFAIMDGETLEPK 261 (543)
T ss_dssp ESSEEEEEETTTCCEE
T ss_pred cCCeEEEEeccccccc
Confidence 899999999887654
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.11 E-value=1.1e-09 Score=63.53 Aligned_cols=81 Identities=9% Similarity=0.044 Sum_probs=67.1
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCC-------CCcEEEEeCCCCCC----------------CCCEEEEEEcc
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGD-------DGSICMWNLNSKLC----------------DSAVRSISFCS 58 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~~~~~d~~~~~~----------------~~~v~~~~~~~ 58 (84)
.+++++++++ .+.+..++++|+++.|.+++. +..+.+||+.+... ...+..+.|+|
T Consensus 410 ~~~v~~l~~~-g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 410 WKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp TSEEEEEECS-CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred CeEEEEEEcC-CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 5788888888 777889999999999999872 66999999986644 34688999999
Q ss_pred CCCEEEEec-----CCCcEEEEeCCCCeec
Q psy16880 59 KQRTLISGG-----DDGSICMWNLNSKLCD 83 (84)
Q Consensus 59 ~~~~~~~~~-----~~~~i~~~~~~~~~~~ 83 (84)
+++.+..+. .++.|.+||..+++++
T Consensus 489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp SSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 999887652 4799999999998875
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.10 E-value=7.8e-09 Score=58.05 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=56.6
Q ss_pred EeccCCCcCEEEEEEccCCCEEE-EeCCCC--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC-CC--cEEE
Q psy16880 7 TFVHSNNSAVRSISFCSKQHTLI-SGGDDG--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD-DG--SICM 74 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~--~i~~ 74 (84)
.+..+ .+.+.+++|+|+++.++ +++.++ .+.+||+.+... ...+..++|+|+++.++.++. ++ .|.+
T Consensus 217 ~l~~~-~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 217 QVASF-PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp EEECC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EeecC-CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 34555 77899999999999777 666555 488899876554 557899999999998887765 34 5777
Q ss_pred EeCCCCe
Q psy16880 75 WNLNSKL 81 (84)
Q Consensus 75 ~~~~~~~ 81 (84)
||+.+++
T Consensus 296 ~d~~~~~ 302 (415)
T 2hqs_A 296 VNINGGA 302 (415)
T ss_dssp EETTSSC
T ss_pred EECCCCC
Confidence 7887654
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.09 E-value=2.6e-09 Score=57.48 Aligned_cols=69 Identities=10% Similarity=0.131 Sum_probs=57.6
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
...+..++|+|+++.++++ ++.+.+||+.+... ...+.+++|+|+++.+++++.++.|.+||+.+++.+
T Consensus 240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 3456789999999988887 68999999976654 456789999999998888888999999999887653
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.05 E-value=3.4e-09 Score=65.06 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=61.5
Q ss_pred EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCC---------
Q psy16880 7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDG--------- 70 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~--------- 70 (84)
.+..+ ...+..++|+|+++.++.++.++.+.+||+.++.. ...+..++|+|+++.++.++.++
T Consensus 373 ~l~~~-~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 373 KFEEN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp ECCCC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred EecCC-ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 44455 67899999999999999999999999999987654 44678899999999898776543
Q ss_pred -cEEEEeCCCCe
Q psy16880 71 -SICMWNLNSKL 81 (84)
Q Consensus 71 -~i~~~~~~~~~ 81 (84)
.+.+||+.+++
T Consensus 452 ~~i~l~d~~~g~ 463 (1045)
T 1k32_A 452 QAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEEEETTTTE
T ss_pred CeEEEEECCCCc
Confidence 89999998765
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.02 E-value=6.1e-09 Score=61.57 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=55.2
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEeCCCC---CC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 16 VRSISFCSKQHTLISGGDDGSICMWNLNSK---LC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~---~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
+..++|+|+++.++.++. +.+.+||+... .. ...+..++|+|+++.++.++ ++.|.+||+.+++.
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence 678999999999988876 89999999876 43 46799999999999998886 56899999987654
No 136
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.01 E-value=4e-09 Score=61.05 Aligned_cols=66 Identities=11% Similarity=-0.072 Sum_probs=54.9
Q ss_pred EEEEEccCCCEEEEeCCC----CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCC--cEEEEeCCCCee
Q psy16880 17 RSISFCSKQHTLISGGDD----GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDG--SICMWNLNSKLC 82 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~----~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~ 82 (84)
.+++|+|+|+.++.++.+ ..+.+||+.++.. ...+...+|+|+++.++++..++ .|.+||+.+++.
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 688999999999977666 6788999876655 45689999999999999877788 899999887654
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.99 E-value=1.3e-08 Score=55.26 Aligned_cols=81 Identities=7% Similarity=0.067 Sum_probs=61.9
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecC-C
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGD-D 69 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~-~ 69 (84)
++.+..+..+ ...+..++|+|+++.++.++.++.+.+||..+... ...+..++|+|+++.++.++. +
T Consensus 174 ~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 174 IKLKTAIQNT-GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp TEEEEEECCC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred CceEEEecCC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence 4555666544 44567889999999999999999999999876654 224677999999987766554 5
Q ss_pred CcEEEEeCCCCeec
Q psy16880 70 GSICMWNLNSKLCD 83 (84)
Q Consensus 70 ~~i~~~~~~~~~~~ 83 (84)
+.+.+||..+++.+
T Consensus 253 ~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 253 AEVLVVDTRNGNIL 266 (353)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CEEEEEECCCCcEE
Confidence 89999999877653
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.97 E-value=1.3e-08 Score=55.02 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=56.7
Q ss_pred cCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 14 SAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 14 ~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
..+..++++| +++.++.+ ++.+.+||+.+... ...+.+++|+|+++.+++++.++.|.+||..+++.+
T Consensus 255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 4567889999 99998888 78999999987654 455789999999988888888899999999887754
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.97 E-value=2.3e-08 Score=53.95 Aligned_cols=81 Identities=4% Similarity=-0.024 Sum_probs=58.7
Q ss_pred CCceEEEeccCCCcCEEEEEEccCCCEEEEe-CCCCcEEEEeCCCCCC-------CCCEEE-EEEccCCCEEEEecCCC-
Q psy16880 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISG-GDDGSICMWNLNSKLC-------DSAVRS-ISFCSKQRTLISGGDDG- 70 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~-------~~~v~~-~~~~~~~~~~~~~~~~~- 70 (84)
+|+.+..+..+ ...+ .++|+|+++.++.+ ..++.+.+||..+... ...... ++|+|+++.+++...++
T Consensus 29 ~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 106 (331)
T 3u4y_A 29 TLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH 106 (331)
T ss_dssp TCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred ccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence 35666666655 5556 99999999865544 5588999999976653 333444 99999999888555443
Q ss_pred --cEEEEeCCCCeec
Q psy16880 71 --SICMWNLNSKLCD 83 (84)
Q Consensus 71 --~i~~~~~~~~~~~ 83 (84)
.|.+||+.+++.+
T Consensus 107 ~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFI 121 (331)
T ss_dssp SCEEEEEETTTTEEE
T ss_pred cccEEEEECCCCCeE
Confidence 8999999887653
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.95 E-value=3.2e-09 Score=62.58 Aligned_cols=79 Identities=8% Similarity=-0.026 Sum_probs=60.3
Q ss_pred CceEEEeccCCCc---CEEEEEEccCCCEEEEeCCC---------CcEEEEeCCCCCC---------CCCEEEEEEccCC
Q psy16880 2 GSIIHTFVHSNNS---AVRSISFCSKQHTLISGGDD---------GSICMWNLNSKLC---------DSAVRSISFCSKQ 60 (84)
Q Consensus 2 g~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~---------~~~~~~d~~~~~~---------~~~v~~~~~~~~~ 60 (84)
|+....+..+ .. .|..++|+|+++.+++++.+ +.+.+||+.++.. ...+..++|+|++
T Consensus 47 g~~~~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG 125 (723)
T 1xfd_A 47 NTSTVLIEGK-KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG 125 (723)
T ss_dssp CCCEEEECTT-TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred CcEEEEeccc-cccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC
Confidence 4555555555 43 48899999999999888654 6788999986653 1237889999999
Q ss_pred CEEEEecCCCcEEEEeCCCCee
Q psy16880 61 RTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
+.++.++. +.|.+|+..+++.
T Consensus 126 ~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 126 QQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp TCEEEEET-TEEEEESSSSSCC
T ss_pred CEEEEEEC-CeEEEEECCCCce
Confidence 99988875 7899999877653
No 141
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=63.78 Aligned_cols=79 Identities=6% Similarity=0.089 Sum_probs=60.1
Q ss_pred CceEEEeccCCCc---CEEEEEEccCCCEEEEeCC---------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEE
Q psy16880 2 GSIIHTFVHSNNS---AVRSISFCSKQHTLISGGD---------DGSICMWNLNSKLC------DSAVRSISFCSKQRTL 63 (84)
Q Consensus 2 g~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~ 63 (84)
|+....+..+ .. .+..++|+|+|+.++.++. ++.+.+||+.++.. ...+..++|+|+++.+
T Consensus 46 g~~~~~~~~~-~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~l 124 (719)
T 1z68_A 46 GQSYTILSNR-TMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKL 124 (719)
T ss_dssp CCEEEEECHH-HHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCE
T ss_pred CcEEEEEccc-cccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEE
Confidence 4444444443 32 3789999999999988866 68999999876543 3567889999999999
Q ss_pred EEecCCCcEEEEeCCCCee
Q psy16880 64 ISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 64 ~~~~~~~~i~~~~~~~~~~ 82 (84)
+.+. ++.|++|+..+++.
T Consensus 125 a~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 125 AYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp EEEE-TTEEEEESSTTSCC
T ss_pred EEEE-CCeEEEEeCCCCCc
Confidence 8885 78999999876553
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.92 E-value=3e-08 Score=52.29 Aligned_cols=72 Identities=6% Similarity=0.047 Sum_probs=54.4
Q ss_pred EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCC-CCC--------CCCEEEEEEccCCCEEEEecC--CCcEEEE
Q psy16880 7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS-KLC--------DSAVRSISFCSKQRTLISGGD--DGSICMW 75 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~-~~~--------~~~v~~~~~~~~~~~~~~~~~--~~~i~~~ 75 (84)
.+..+ ...+.+++|+|+++.+++++ ++.+.+||+.. ... ...+.+++|+|+++.+++++. ++...+|
T Consensus 36 ~~~~~-~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 36 VVWQT-PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEE-SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeccC-CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 34455 78899999999999998876 77999999987 544 256788999999999998873 3444444
Q ss_pred --eCCCC
Q psy16880 76 --NLNSK 80 (84)
Q Consensus 76 --~~~~~ 80 (84)
+..++
T Consensus 114 ~~~~~~~ 120 (297)
T 2ojh_A 114 LLPSTGG 120 (297)
T ss_dssp EEETTCC
T ss_pred EEECCCC
Confidence 54443
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.90 E-value=3.7e-08 Score=53.45 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=55.6
Q ss_pred EEEEEEccCCCEEEEeC--CCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 16 VRSISFCSKQHTLISGG--DDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 16 v~~~~~~~~~~~l~~~~--~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
+..+.|+|+++.++.+. .++.+.+||..+... ...+..++|+|+++.++.++.++.+.+||..+++.+
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL 219 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE
Confidence 67899999998766654 578899999976655 234788999999999998888999999999887653
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.89 E-value=2.5e-08 Score=52.58 Aligned_cols=75 Identities=5% Similarity=0.072 Sum_probs=56.2
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeC-CCCcEEEEeCCC-CCC-------CCCEEEEEEccCCCEEEEecCC-------
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGG-DDGSICMWNLNS-KLC-------DSAVRSISFCSKQRTLISGGDD------- 69 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~-~~~-------~~~v~~~~~~~~~~~~~~~~~~------- 69 (84)
..+..+ ...+..++|+|+++.++.++ .++.+.+|++.. ... ...+..++|+|+++.++.++.+
T Consensus 166 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 166 TRLTHG-EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp EECCCS-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred eEcccC-CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 344455 67889999999999776554 588889998752 222 3467889999999988877654
Q ss_pred ----CcEEEEeCCCCe
Q psy16880 70 ----GSICMWNLNSKL 81 (84)
Q Consensus 70 ----~~i~~~~~~~~~ 81 (84)
..+.+||+.+++
T Consensus 245 ~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGN 260 (297)
T ss_dssp SSEEEEEEEEETTSCS
T ss_pred ccCceEEEEEecCCCC
Confidence 469999988764
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.82 E-value=1.3e-08 Score=58.94 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=55.9
Q ss_pred EeccCCCcCEEEEEEccCCCEEEEeCCCC--cEEEEeCCCCCC------CCCEEEEE--------EccCCCEEEEecCCC
Q psy16880 7 TFVHSNNSAVRSISFCSKQHTLISGGDDG--SICMWNLNSKLC------DSAVRSIS--------FCSKQRTLISGGDDG 70 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~------~~~v~~~~--------~~~~~~~~~~~~~~~ 70 (84)
.+..+ .+.+..++|+|+|+.++++..++ .+.+||+.++.. ...+..+. |+|++..+++++.++
T Consensus 189 ~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 189 VFDSG-EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp EECCS-SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred EeecC-CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 45566 77789999999999999888888 888999876543 22233344 999998888898999
Q ss_pred cEEEEeC
Q psy16880 71 SICMWNL 77 (84)
Q Consensus 71 ~i~~~~~ 77 (84)
.+++|++
T Consensus 268 ~~~l~~~ 274 (582)
T 3o4h_A 268 RSAVFID 274 (582)
T ss_dssp EEEEEET
T ss_pred cEEEEEE
Confidence 9999998
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.82 E-value=3.3e-08 Score=53.33 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=52.2
Q ss_pred CcCEEEEEEccCCCEEEEeCCC-CcEEEEeCC--CCCC--------CCCEEEEEEccCCCEEEEecC-CCcEEEEeCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDD-GSICMWNLN--SKLC--------DSAVRSISFCSKQRTLISGGD-DGSICMWNLN 78 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~-~~~~~~d~~--~~~~--------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 78 (84)
...+..++|+|+++.+++++.+ +.+.+|++. .... ...+..++|+|+++.+++++. ++.|.+|++.
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 5667889999999988777765 899999997 3332 347889999999997766554 7889999983
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.82 E-value=5.1e-08 Score=52.48 Aligned_cols=81 Identities=5% Similarity=0.015 Sum_probs=59.2
Q ss_pred CceEEEeccCCCc-CEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CC------CEEEEEEccCCCEEEEec
Q psy16880 2 GSIIHTFVHSNNS-AVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DS------AVRSISFCSKQRTLISGG 67 (84)
Q Consensus 2 g~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~------~v~~~~~~~~~~~~~~~~ 67 (84)
++.+..+...+.. .+..++|+|+++.+ +++..++.+.+||..+... .. .+..++|+|+++.++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 100 (337)
T 1pby_B 21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence 4555555533011 46789999999755 5667788999999976654 22 567899999998888775
Q ss_pred ------------CCCcEEEEeCCCCee
Q psy16880 68 ------------DDGSICMWNLNSKLC 82 (84)
Q Consensus 68 ------------~~~~i~~~~~~~~~~ 82 (84)
.++.|.+||+.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~ 127 (337)
T 1pby_B 101 SPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred cccccccccccccCceEEEEECCCCcE
Confidence 468999999987764
No 148
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.82 E-value=2.8e-08 Score=54.71 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=59.1
Q ss_pred CCceEEEeccCCCcCEEE-----EEEccCCCEEEEeCC-CC--cEEEEeCCCCCC-------CCCEEEEEEccCCCEEEE
Q psy16880 1 DGSIIHTFVHSNNSAVRS-----ISFCSKQHTLISGGD-DG--SICMWNLNSKLC-------DSAVRSISFCSKQRTLIS 65 (84)
Q Consensus 1 ~g~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-~~--~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~ 65 (84)
+|..+..+..+ ...... .+|+|+++.++..+. ++ .+.+||+.+... ...+....|+|+++.++.
T Consensus 19 ~g~~~~~lt~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 19 TGAQVTRLTPP-DVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp TCCEEEECSCT-TSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred CCcceEEecCC-cccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 35566677666 555554 789999998887766 56 477778776544 222335689999999999
Q ss_pred ecCCCcEEEEeCCCCee
Q psy16880 66 GGDDGSICMWNLNSKLC 82 (84)
Q Consensus 66 ~~~~~~i~~~~~~~~~~ 82 (84)
+..++.+.+||+.+++.
T Consensus 98 ~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEE 114 (388)
T ss_dssp EETTTEEEEEETTTCCE
T ss_pred EeCCCeEEEEECCCCcc
Confidence 98888999999987653
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.80 E-value=3.1e-08 Score=58.63 Aligned_cols=66 Identities=8% Similarity=0.178 Sum_probs=55.3
Q ss_pred cCEEEEEEccCCCEEEEeCC-CC-----cEEEEeCCCCCC-------C------------------------CCEEEEEE
Q psy16880 14 SAVRSISFCSKQHTLISGGD-DG-----SICMWNLNSKLC-------D------------------------SAVRSISF 56 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~-~~-----~~~~~d~~~~~~-------~------------------------~~v~~~~~ 56 (84)
..+..++|+|+|+.+++++. ++ .+.+||+.++.. . ..+..++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 45789999999999999887 77 899999987654 1 12688999
Q ss_pred ccCCCEEEEecCCCcEEEEeCCCC
Q psy16880 57 CSKQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 57 ~~~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
+|+++.+++++. +.|.+||+.++
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~ 139 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQE 139 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSC
T ss_pred CCCCCEEEEEeC-CcEEEEECCCC
Confidence 999999988875 89999999876
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.77 E-value=6.4e-08 Score=52.36 Aligned_cols=79 Identities=9% Similarity=0.134 Sum_probs=58.0
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CC-------CEEEEEEccCCCEEEEec
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DS-------AVRSISFCSKQRTLISGG 67 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~-------~v~~~~~~~~~~~~~~~~ 67 (84)
++.+..+.......+..++|+|+++.+ ++...++.+.+||+.+... .. .+..++|+|+++.+++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 110 (349)
T 1jmx_B 31 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 110 (349)
T ss_dssp TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEc
Confidence 455666654411246788999999854 5666788999999976654 11 167899999999888887
Q ss_pred CC------------CcEEEEeCCCC
Q psy16880 68 DD------------GSICMWNLNSK 80 (84)
Q Consensus 68 ~~------------~~i~~~~~~~~ 80 (84)
.+ +.|.+||+.++
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 111 NPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGG
T ss_pred ccccccccccccCCCeEEEEECCCc
Confidence 54 89999998764
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.77 E-value=2.3e-07 Score=50.09 Aligned_cols=74 Identities=5% Similarity=0.127 Sum_probs=53.9
Q ss_pred EEEeccCCCcCEEEEEEccCCCEEEEeCCCC---cEEEEeCCCCCC------CCCEEEEEEccCCCEEEE-ecCCCc-EE
Q psy16880 5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDG---SICMWNLNSKLC------DSAVRSISFCSKQRTLIS-GGDDGS-IC 73 (84)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~-~~~~~~-i~ 73 (84)
...+..+ ..+..+++|+|+++.+++...++ .+.+||+..... ......++|+|+++.+++ ...++. +.
T Consensus 76 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 76 VVAIQEG-QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEEEC-SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EEecccC-CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEE
Confidence 4445444 45554489999999888665553 899999987655 456789999999975554 455578 99
Q ss_pred EEeCCC
Q psy16880 74 MWNLNS 79 (84)
Q Consensus 74 ~~~~~~ 79 (84)
+|++..
T Consensus 155 ~~~~~~ 160 (331)
T 3u4y_A 155 RFKIDA 160 (331)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 998764
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.76 E-value=3.5e-07 Score=49.82 Aligned_cols=66 Identities=8% Similarity=0.167 Sum_probs=51.2
Q ss_pred CcCEEEEEEccCCCEEEEeC-CCCcEEEEeCCCCCC---------C----------CCEEEEEEccCCCEEEEecCCCcE
Q psy16880 13 NSAVRSISFCSKQHTLISGG-DDGSICMWNLNSKLC---------D----------SAVRSISFCSKQRTLISGGDDGSI 72 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~~~~---------~----------~~v~~~~~~~~~~~~~~~~~~~~i 72 (84)
...+..++|+|+++.+++++ .++.+.+||+..... . ..+..++|+|+++.+++...++.+
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v 164 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV 164 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE
Confidence 55667899999999777776 778999999963211 1 137789999999966666668899
Q ss_pred EEEeCC
Q psy16880 73 CMWNLN 78 (84)
Q Consensus 73 ~~~~~~ 78 (84)
.+|++.
T Consensus 165 ~~~~~~ 170 (347)
T 3hfq_A 165 YVYNVS 170 (347)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999987
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.75 E-value=7.9e-08 Score=56.70 Aligned_cols=65 Identities=8% Similarity=0.154 Sum_probs=52.7
Q ss_pred EEEEEEccCCCEEEEeC---------------------------------CCCcEEEEeCCCCCC---------CCCEEE
Q psy16880 16 VRSISFCSKQHTLISGG---------------------------------DDGSICMWNLNSKLC---------DSAVRS 53 (84)
Q Consensus 16 v~~~~~~~~~~~l~~~~---------------------------------~~~~~~~~d~~~~~~---------~~~v~~ 53 (84)
+..+.|+|+++.|+.++ .+..+.+||+.+... ...+..
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 47899999999998876 446788999976543 245889
Q ss_pred EEEccCCCEEEEecCCC-----cEEEEeCCCC
Q psy16880 54 ISFCSKQRTLISGGDDG-----SICMWNLNSK 80 (84)
Q Consensus 54 ~~~~~~~~~~~~~~~~~-----~i~~~~~~~~ 80 (84)
++|+|+++.+++++.++ .+.+||..++
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 99999999888876654 8999999887
No 154
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.74 E-value=3.8e-08 Score=53.10 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=51.4
Q ss_pred cCEEEEEEccCCCEEEEe-CCCCcEEEEeCCCC---CC------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCC
Q psy16880 14 SAVRSISFCSKQHTLISG-GDDGSICMWNLNSK---LC------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNS 79 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~---~~------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 79 (84)
..+..++|+|+++.++.+ ..++.+.+||+... .. ...+..++|+|+++.+++++ .++.+.+|++.+
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 367889999999977555 45888999999422 11 44688899999998777766 789999999876
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.72 E-value=2.2e-07 Score=50.62 Aligned_cols=68 Identities=10% Similarity=0.191 Sum_probs=51.2
Q ss_pred CEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecC-CCcEEEE--eCCCC
Q psy16880 15 AVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGD-DGSICMW--NLNSK 80 (84)
Q Consensus 15 ~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~--~~~~~ 80 (84)
.+..++|+|+++.+ ++...++.+.+||+..... ...+..++|+|+++.++++.. ++.+.+| |..++
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 47789999999976 5566688999999863211 335789999999998877765 4889999 55555
Q ss_pred ee
Q psy16880 81 LC 82 (84)
Q Consensus 81 ~~ 82 (84)
+.
T Consensus 321 ~l 322 (347)
T 3hfq_A 321 KL 322 (347)
T ss_dssp CE
T ss_pred eE
Confidence 43
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.68 E-value=1.1e-07 Score=56.74 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=58.6
Q ss_pred CceEEEeccCCCcC-----EEEEEEccCCCEEEEeCCC---------CcEEEEeCCCCCC------CCCEEEEEEccCCC
Q psy16880 2 GSIIHTFVHSNNSA-----VRSISFCSKQHTLISGGDD---------GSICMWNLNSKLC------DSAVRSISFCSKQR 61 (84)
Q Consensus 2 g~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~---------~~~~~~d~~~~~~------~~~v~~~~~~~~~~ 61 (84)
|+....++++ ... ...++|+|+++.++.++.+ +.+.+||+.++.. ...+...+|+|+++
T Consensus 46 ~~~~~~~~~~-~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~ 124 (740)
T 4a5s_A 46 GNSSVFLENS-TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH 124 (740)
T ss_dssp CCEEEEECTT-TTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT
T ss_pred CceEEEEech-hhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCC
Confidence 5555556665 322 2347899999999888765 5667999987654 45789999999999
Q ss_pred EEEEecCCCcEEEEeCCCCe
Q psy16880 62 TLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 62 ~~~~~~~~~~i~~~~~~~~~ 81 (84)
.++.+. ++.|.+|+..+++
T Consensus 125 ~la~~~-~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 125 KLAYVW-NNDIYVKIEPNLP 143 (740)
T ss_dssp CEEEEE-TTEEEEESSTTSC
T ss_pred EEEEEE-CCeEEEEECCCCc
Confidence 998884 6889999987654
No 157
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.68 E-value=7.6e-07 Score=52.25 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=61.7
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCC--CCCC------CCCEEEEEEc----cCCCEEEEecC-
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN--SKLC------DSAVRSISFC----SKQRTLISGGD- 68 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~--~~~~------~~~v~~~~~~----~~~~~~~~~~~- 68 (84)
++.+.++... ..+..+.++|+++++++++.++.+.+||+. +... ......++|+ |++++++++..
T Consensus 187 ~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 187 YEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp CCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc
Confidence 4566666543 345689999999999999999999999995 4333 4567899999 69988877654
Q ss_pred CCcEEEEeCCCCeec
Q psy16880 69 DGSICMWNLNSKLCD 83 (84)
Q Consensus 69 ~~~i~~~~~~~~~~~ 83 (84)
++.+.++|..+.+.+
T Consensus 265 ~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 265 PPQYVIMDGETLEPK 279 (567)
T ss_dssp TTEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEE
Confidence 588999998877654
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.67 E-value=7.2e-07 Score=48.87 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=50.6
Q ss_pred CcCEEEEEEccCCCEEEEeC-CCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecC--CCcEEEEeC
Q psy16880 13 NSAVRSISFCSKQHTLISGG-DDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGD--DGSICMWNL 77 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~--~~~i~~~~~ 77 (84)
......++|+|+++.++.++ .++.+.+||+..... ......++|+|+++.++++.. ++.+.+|++
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 34567899999999776555 688999999875432 234679999999998866655 488999988
Q ss_pred C
Q psy16880 78 N 78 (84)
Q Consensus 78 ~ 78 (84)
.
T Consensus 290 ~ 290 (361)
T 3scy_A 290 D 290 (361)
T ss_dssp C
T ss_pred c
Confidence 5
No 159
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.65 E-value=2.6e-06 Score=46.16 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=59.1
Q ss_pred eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCC----CcE
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDD----GSI 72 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~----~~i 72 (84)
....+..+ ...+..++|++++.+++++..++.+.+||...... ...+.+++++|+++++++...+ +.|
T Consensus 36 ~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 36 PWLEISKK-GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEEESS-CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred eeEEEecc-CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 34445555 56678999999999888888889999999876543 3578999999999877776555 579
Q ss_pred EEEeCCCCe
Q psy16880 73 CMWNLNSKL 81 (84)
Q Consensus 73 ~~~~~~~~~ 81 (84)
.+||..+++
T Consensus 115 ~~~d~~~~~ 123 (333)
T 2dg1_A 115 FAATENGDN 123 (333)
T ss_dssp EEECTTSCS
T ss_pred EEEeCCCCE
Confidence 999877654
No 160
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.65 E-value=2.4e-07 Score=57.13 Aligned_cols=76 Identities=8% Similarity=-0.005 Sum_probs=59.1
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCC----------CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDD----------GSICMWNLNSKLC------DSAVRSISFCSKQRTLIS 65 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~ 65 (84)
|+....++++ .+.+..++|+|+++.++.++.+ ..+.+||+..... ...+..++|+|+++.++.
T Consensus 410 g~~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 410 GKPTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp CCEEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred CceEEeccCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEE
Confidence 4555555566 7888899999999988877654 3899999976544 445788999999999998
Q ss_pred ecCCCcEEEEeCC
Q psy16880 66 GGDDGSICMWNLN 78 (84)
Q Consensus 66 ~~~~~~i~~~~~~ 78 (84)
.+.++...+|+..
T Consensus 489 ~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 489 LSYRSLDPSPDRV 501 (1045)
T ss_dssp EESCCCCCEECSS
T ss_pred EecccCCcCcchh
Confidence 8887777777653
No 161
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.65 E-value=2.2e-06 Score=45.61 Aligned_cols=80 Identities=8% Similarity=0.192 Sum_probs=57.4
Q ss_pred CceEEEeccCC-CcCEEEEEEccCCCEEEEeCCCC-cEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880 2 GSIIHTFVHSN-NSAVRSISFCSKQHTLISGGDDG-SICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGS 71 (84)
Q Consensus 2 g~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~-~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~ 71 (84)
|+.+..+.... ...+..+++++++..+++...++ .+.+||...... ...+.++++.|+++++++ +.++.
T Consensus 194 g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 194 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR 272 (286)
T ss_dssp CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe
Confidence 34444553320 25678999999999888887775 999999654322 234779999999986666 56899
Q ss_pred EEEEeCCCCee
Q psy16880 72 ICMWNLNSKLC 82 (84)
Q Consensus 72 i~~~~~~~~~~ 82 (84)
|.+|++....+
T Consensus 273 v~v~~~~~~~p 283 (286)
T 1q7f_A 273 LYIYRYVQLAP 283 (286)
T ss_dssp EEEEECSCCCC
T ss_pred EEEEEcccccc
Confidence 99999876544
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.65 E-value=1.1e-07 Score=52.71 Aligned_cols=79 Identities=5% Similarity=0.069 Sum_probs=58.8
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C-------CCEEEEEEcc
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D-------SAVRSISFCS 58 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~-------~~v~~~~~~~ 58 (84)
++.+..+... ..+ .++++|+++++..++ .++.+.+||..+... . .....++++|
T Consensus 41 ~~~~~~i~~g-~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 41 GKFLGMVPTA-FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp CCEEEEEECC-EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred CeEEEEecCC-CCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence 4556666554 444 889999999988875 256799999876544 1 2456799999
Q ss_pred CCCEEEEecC--CCcEEEEeCCCCeec
Q psy16880 59 KQRTLISGGD--DGSICMWNLNSKLCD 83 (84)
Q Consensus 59 ~~~~~~~~~~--~~~i~~~~~~~~~~~ 83 (84)
+++.++++.. ++.|.+||+.+++.+
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYV 144 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEE
Confidence 9998887763 578999999887653
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.63 E-value=1.2e-06 Score=47.95 Aligned_cols=68 Identities=10% Similarity=0.210 Sum_probs=50.2
Q ss_pred cCEEEEEEccCCCEEEEeCC--CCcEEEEeCCC--CCC--------CCCEEEEEEccCCCEEEEec-CCCcEEEE--eCC
Q psy16880 14 SAVRSISFCSKQHTLISGGD--DGSICMWNLNS--KLC--------DSAVRSISFCSKQRTLISGG-DDGSICMW--NLN 78 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~--~~~~~~~d~~~--~~~--------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~--~~~ 78 (84)
.....++|+|+++.++.+.. ++.+.+|++.. +.. ...+..++|+|+++++++++ .++.+.+| |..
T Consensus 259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~ 338 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA 338 (361)
T ss_dssp CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence 34568999999998866554 48899999862 221 33678999999999887776 56889996 444
Q ss_pred CCe
Q psy16880 79 SKL 81 (84)
Q Consensus 79 ~~~ 81 (84)
+++
T Consensus 339 ~g~ 341 (361)
T 3scy_A 339 TGL 341 (361)
T ss_dssp TCC
T ss_pred CCc
Confidence 554
No 164
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.61 E-value=3.8e-07 Score=53.92 Aligned_cols=66 Identities=8% Similarity=0.153 Sum_probs=49.7
Q ss_pred EEEEEccCCCEEEEeCCCC----------------------------------cEEEEeCCCCCC-------------CC
Q psy16880 17 RSISFCSKQHTLISGGDDG----------------------------------SICMWNLNSKLC-------------DS 49 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~----------------------------------~~~~~d~~~~~~-------------~~ 49 (84)
..++|+|+++.|+.++.+. .+.+||+.+... ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 6899999999988876432 788999876652 12
Q ss_pred CEEEEEEccCCCEEEEecC----CCcEEEEeCCCCee
Q psy16880 50 AVRSISFCSKQRTLISGGD----DGSICMWNLNSKLC 82 (84)
Q Consensus 50 ~v~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~ 82 (84)
.+..++|+|+++.++.... +..|.+||+.++++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 5788999999987765532 35689999887664
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.56 E-value=5.7e-07 Score=49.81 Aligned_cols=63 Identities=6% Similarity=0.114 Sum_probs=49.9
Q ss_pred EEEccCCCEEEEeCC-----------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC-
Q psy16880 19 ISFCSKQHTLISGGD-----------DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK- 80 (84)
Q Consensus 19 ~~~~~~~~~l~~~~~-----------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 80 (84)
++++|++..+..+.. ...+.+||..+.+. .. +.+++|+|+++.++++.. +.|.+||..++
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 678888777665432 34799999987765 44 899999999998888876 99999999988
Q ss_pred -eec
Q psy16880 81 -LCD 83 (84)
Q Consensus 81 -~~~ 83 (84)
+.+
T Consensus 337 l~~~ 340 (361)
T 2oiz_A 337 PKLL 340 (361)
T ss_dssp CEEE
T ss_pred ceee
Confidence 654
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.56 E-value=4.4e-06 Score=46.07 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=50.5
Q ss_pred CcCEEEEEEccCCCEEEEeC-CCCcEEEEeCC-CCCC-----------CCCEEEEEEccCCCEEEEecC-CCcEEEEeCC
Q psy16880 13 NSAVRSISFCSKQHTLISGG-DDGSICMWNLN-SKLC-----------DSAVRSISFCSKQRTLISGGD-DGSICMWNLN 78 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~-~~~~-----------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 78 (84)
...+..++|+|+++.++++. .+..+.+||+. ++.. ...+.+++|+|+++.++++.. ++.+.+|++.
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 45688999999999777654 46789999997 4432 235889999999998877664 6789998754
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.55 E-value=4.1e-07 Score=53.86 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=52.2
Q ss_pred EEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----C------CCEEEEEEccCCCEEEEecC---------CCcEEEEeC
Q psy16880 17 RSISFCSKQHTLISGGDDGSICMWNLNSKLC----D------SAVRSISFCSKQRTLISGGD---------DGSICMWNL 77 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----~------~~v~~~~~~~~~~~~~~~~~---------~~~i~~~~~ 77 (84)
..++|+|+++.+++ +.++.+.+||+.++.. . ..+..++|+|+++.++.++. ++.|.+||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 36789999965554 4689999999987655 1 23889999999999988765 689999999
Q ss_pred CCCee
Q psy16880 78 NSKLC 82 (84)
Q Consensus 78 ~~~~~ 82 (84)
.+++.
T Consensus 98 ~~g~~ 102 (719)
T 1z68_A 98 SNGEF 102 (719)
T ss_dssp TTTEE
T ss_pred CCCcc
Confidence 88875
No 168
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.53 E-value=8.1e-06 Score=48.33 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=54.7
Q ss_pred CceEEEeccCCCcCEEE-EEEccCCCEEEE-eCCCC----cEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCC-
Q psy16880 2 GSIIHTFVHSNNSAVRS-ISFCSKQHTLIS-GGDDG----SICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDD- 69 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~-~~~~~~~~~l~~-~~~~~----~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~- 69 (84)
++.++.+..+ ...+.. ++|+|+++.++. +..++ .+..||..+... ...+..++|+|+++.++....+
T Consensus 344 ~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 344 GRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp SCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECS
T ss_pred CCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCC
Confidence 4455666666 666766 799999987654 44443 555666655433 4568899999999988765433
Q ss_pred ---CcEEEEeCCCCe
Q psy16880 70 ---GSICMWNLNSKL 81 (84)
Q Consensus 70 ---~~i~~~~~~~~~ 81 (84)
..+.+||..+++
T Consensus 423 ~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCSCEEEEEESSSCE
T ss_pred CCCcEEEEEECCCCe
Confidence 459999987764
No 169
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.53 E-value=3.5e-06 Score=45.07 Aligned_cols=75 Identities=4% Similarity=0.018 Sum_probs=58.5
Q ss_pred EEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880 6 HTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (84)
..+... ......++|+|+++ +++++..++.+..||...... ...+.++++.+++.++++...++.|.+|+..+
T Consensus 21 ~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 21 RRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 344444 55678999999998 778888889999999876521 45689999999999877776678899999866
Q ss_pred Ce
Q psy16880 80 KL 81 (84)
Q Consensus 80 ~~ 81 (84)
++
T Consensus 100 g~ 101 (296)
T 3e5z_A 100 GE 101 (296)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 170
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.53 E-value=1e-06 Score=49.67 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=51.7
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
...+.++.+.+. .++.+..+|.+.+||+..... ...|++++|+|+| ++.+..|+.+.+|++...+
T Consensus 126 ~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 126 EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred ecceeeEEecCC--CEEEEECCCCEEEEEccCCccccccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 456777766543 388889999999999986544 5689999999999 6778889999999876654
No 171
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.47 E-value=9.9e-07 Score=52.41 Aligned_cols=68 Identities=6% Similarity=0.061 Sum_probs=52.6
Q ss_pred cCEEEEEEccCCCEEE-----EeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCc----------
Q psy16880 14 SAVRSISFCSKQHTLI-----SGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGS---------- 71 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~-----~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~---------- 71 (84)
..+..++|+|+|+.++ .|+.+..+.+||+.++.. ......++|+|+++.++.++.+..
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~ 200 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG 200 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence 3578899999999988 555567899999976543 111267899999999988877665
Q ss_pred ---EEEEeCCCCe
Q psy16880 72 ---ICMWNLNSKL 81 (84)
Q Consensus 72 ---i~~~~~~~~~ 81 (84)
|.+|++.+++
T Consensus 201 ~~~v~~~~l~t~~ 213 (695)
T 2bkl_A 201 YTTIRYHTLGTEP 213 (695)
T ss_dssp GCEEEEEETTSCG
T ss_pred CCEEEEEECCCCc
Confidence 9999987654
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.43 E-value=2.1e-05 Score=41.76 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=58.4
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC 73 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~ 73 (84)
|+.+..+...+...+..+++++++..+++...++.+.+||...... ...+.++++.++++++++...++.|.
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 188 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 188 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEE
Confidence 4445555332145678999999999888888888999999653322 23588999999998777777788999
Q ss_pred EEeCCCC
Q psy16880 74 MWNLNSK 80 (84)
Q Consensus 74 ~~~~~~~ 80 (84)
+|+....
T Consensus 189 ~~~~~g~ 195 (286)
T 1q7f_A 189 VFNYEGQ 195 (286)
T ss_dssp EEETTCC
T ss_pred EEcCCCC
Confidence 9997543
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.42 E-value=8.2e-07 Score=48.84 Aligned_cols=79 Identities=10% Similarity=0.144 Sum_probs=54.6
Q ss_pred CceEEEeccCCCcC-----EEEEEEccCCCEEEEeCC---CCcEEEEeCCCCCC------CCC-EEEEEEccCCCEEEEe
Q psy16880 2 GSIIHTFVHSNNSA-----VRSISFCSKQHTLISGGD---DGSICMWNLNSKLC------DSA-VRSISFCSKQRTLISG 66 (84)
Q Consensus 2 g~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~------~~~-v~~~~~~~~~~~~~~~ 66 (84)
|+.+..+..+ ... +..++|+|+++.++.... ...+.+||+..... ... .....|+|+++.++.+
T Consensus 20 g~~~~~l~~~-~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 20 QVKVTRLTPT-DIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp CCEEEECSCT-TSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEE
T ss_pred CcceEEEecC-CCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEE
Confidence 4555566543 332 567789999998766533 23677788766543 222 2237799999999888
Q ss_pred cCCCcEEEEeCCCCe
Q psy16880 67 GDDGSICMWNLNSKL 81 (84)
Q Consensus 67 ~~~~~i~~~~~~~~~ 81 (84)
+.++.+.+|++.+++
T Consensus 99 ~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 99 KNELNLMKVDLETLE 113 (396)
T ss_dssp ETTTEEEEEETTTCC
T ss_pred EcCCcEEEEECCCCC
Confidence 888899999988765
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.41 E-value=1.2e-06 Score=52.19 Aligned_cols=67 Identities=9% Similarity=0.143 Sum_probs=51.4
Q ss_pred CEEEEEEccCCCEEEEeCCCC-----cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCc------------
Q psy16880 15 AVRSISFCSKQHTLISGGDDG-----SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGS------------ 71 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~-----~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~------------ 71 (84)
.+..++|+|+++.++.+...+ .+.+||+.++.. ...+..++|+|+++.++.+..++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 477899999999887654332 899999987655 223567999999998988876655
Q ss_pred ----EEEEeCCCCe
Q psy16880 72 ----ICMWNLNSKL 81 (84)
Q Consensus 72 ----i~~~~~~~~~ 81 (84)
|.+|++.+++
T Consensus 206 ~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQ 219 (710)
T ss_dssp CCCEEEEEETTSCG
T ss_pred CCCEEEEEECCCCc
Confidence 9999987654
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.38 E-value=2.3e-06 Score=51.19 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=51.7
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CC--CEEEEEEccCCCEEEEecCC---------CcEE
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DS--AVRSISFCSKQRTLISGGDD---------GSIC 73 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~--~v~~~~~~~~~~~~~~~~~~---------~~i~ 73 (84)
....+.|+|+++.++++ ++.+.+||+.++.. .. ....++|+|+++.++.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35688999999888886 89999999987654 11 12348899999999887764 5567
Q ss_pred EEeCCCCeec
Q psy16880 74 MWNLNSKLCD 83 (84)
Q Consensus 74 ~~~~~~~~~~ 83 (84)
+||+.+++..
T Consensus 96 ~~d~~~~~~~ 105 (740)
T 4a5s_A 96 IYDLNKRQLI 105 (740)
T ss_dssp EEETTTTEEC
T ss_pred EEECCCCcEE
Confidence 9999988753
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.35 E-value=2.1e-06 Score=50.46 Aligned_cols=68 Identities=6% Similarity=-0.030 Sum_probs=52.6
Q ss_pred CcCEEEEEEccCCCEEEEeCCC----------CcEEEEeCCC------CCC---C----CCEEEEEEccCCCEEEEecCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDD----------GSICMWNLNS------KLC---D----SAVRSISFCSKQRTLISGGDD 69 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~----------~~~~~~d~~~------~~~---~----~~v~~~~~~~~~~~~~~~~~~ 69 (84)
...+..++|+|+++.|+.++.+ ..+.+||+.. ... . ..+..++|+|+++.++..+.+
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECC
Confidence 5678899999999999888766 5788999876 332 2 346778999999999877644
Q ss_pred --------CcEEEEeCC-CC
Q psy16880 70 --------GSICMWNLN-SK 80 (84)
Q Consensus 70 --------~~i~~~~~~-~~ 80 (84)
..|.+||+. ++
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTS
T ss_pred CCCCCCCCcEEEEEEECCCC
Confidence 369999988 45
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.32 E-value=3.1e-05 Score=42.25 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=55.5
Q ss_pred CcCEEEEEEccCCCEEEEeCCC------------------------CcEEEEeCCCCCC--------CCCEEEEEEccCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDD------------------------GSICMWNLNSKLC--------DSAVRSISFCSKQ 60 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~------------------------~~~~~~d~~~~~~--------~~~v~~~~~~~~~ 60 (84)
.+.+..++++++++.+++...+ +.+.+||..++.. -..+..+++.|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4678999999999999888777 4689999875544 2368899999999
Q ss_pred CEEEEecCCCcEEEEeCCCC
Q psy16880 61 RTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~~~ 80 (84)
.++++...++.|.+|+....
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~ 122 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSK 122 (329)
T ss_dssp CEEEEETTTTEEEEECTTCS
T ss_pred CEEEEECCCCEEEEEeCCCC
Confidence 98888888899999997644
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.31 E-value=4.1e-06 Score=49.23 Aligned_cols=69 Identities=6% Similarity=0.040 Sum_probs=50.6
Q ss_pred CcCEEEEEEccCCCEEEEeCCC--------CcEEEEeCC-CC---CC-------CCCEEEEEEccCCCEEEEecCCC--c
Q psy16880 13 NSAVRSISFCSKQHTLISGGDD--------GSICMWNLN-SK---LC-------DSAVRSISFCSKQRTLISGGDDG--S 71 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~--------~~~~~~d~~-~~---~~-------~~~v~~~~~~~~~~~~~~~~~~~--~ 71 (84)
...+..++|+|+|+.++..+.+ ..+.+||+. ++ .. ...+..+.|+|++++++++..++ .
T Consensus 187 ~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~ 266 (662)
T 3azo_A 187 HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWN 266 (662)
T ss_dssp SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeE
Confidence 4567788999999988866543 378899998 44 22 35788999999999777777777 5
Q ss_pred EEEEeCCCCe
Q psy16880 72 ICMWNLNSKL 81 (84)
Q Consensus 72 i~~~~~~~~~ 81 (84)
|.+|+..+++
T Consensus 267 l~~~~~~~~~ 276 (662)
T 3azo_A 267 LHRVDPATGA 276 (662)
T ss_dssp EEEECTTTCC
T ss_pred EEEEECCCCc
Confidence 6666654443
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.30 E-value=6.1e-06 Score=44.84 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=48.7
Q ss_pred CEEEEEEccCCCEEEEeCCC---C--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCC--------------
Q psy16880 15 AVRSISFCSKQHTLISGGDD---G--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDD-------------- 69 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~---~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~-------------- 69 (84)
.+..++|+|+++.++..+.+ + .+.+||+..+.. .. +..+.|+|+++.++..+.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 35678999999988776543 3 366677765543 34 8899999999988877532
Q ss_pred -------------CcEEEEeCCCCee
Q psy16880 70 -------------GSICMWNLNSKLC 82 (84)
Q Consensus 70 -------------~~i~~~~~~~~~~ 82 (84)
..|.+|++.+++.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp CC---------CEEEEEEEETTTTEE
T ss_pred eeecCcccccCccceEEEEECCCCeE
Confidence 4688899887764
No 180
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.28 E-value=5.1e-06 Score=46.85 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=58.5
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C--------CCEEEEEEc
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D--------SAVRSISFC 57 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~--------~~v~~~~~~ 57 (84)
++.+.++..- ..+ . +.++|+++.+..++ .+..+.+||..+... . .....+.++
T Consensus 69 ~~v~~~I~vG-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s 145 (386)
T 3sjl_D 69 GRVIGMIDGG-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT 145 (386)
T ss_dssp TEEEEEEEEC-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred CeEEEEEECC-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence 4556666654 455 4 89999999877665 356799999987665 1 135568999
Q ss_pred cCCCEEEEecC--CCcEEEEeCCCCeec
Q psy16880 58 SKQRTLISGGD--DGSICMWNLNSKLCD 83 (84)
Q Consensus 58 ~~~~~~~~~~~--~~~i~~~~~~~~~~~ 83 (84)
|+++.++.... ++.+.++|+.+++.+
T Consensus 146 pDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 146 PDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 99998887753 688999999988764
No 181
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.26 E-value=4.1e-05 Score=42.80 Aligned_cols=78 Identities=8% Similarity=-0.065 Sum_probs=56.1
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C--------CCEEEEEEc
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D--------SAVRSISFC 57 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~--------~~v~~~~~~ 57 (84)
++.+.+++.. ..+ .+.++|+++.+..++ .+..+.+||..+... . .....+.++
T Consensus 57 ~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s 133 (373)
T 2mad_H 57 GSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred CeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence 4555555543 333 889999999888775 356799999976543 1 134578999
Q ss_pred cCCCEEEEecC--CCcEEEEeCCCCeec
Q psy16880 58 SKQRTLISGGD--DGSICMWNLNSKLCD 83 (84)
Q Consensus 58 ~~~~~~~~~~~--~~~i~~~~~~~~~~~ 83 (84)
|+++.++.... ++.|.++| .+++.+
T Consensus 134 pDG~~l~v~n~~~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 134 PNNADLLFFQFAAGPAVGLVV-QGGSSD 160 (373)
T ss_pred CCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence 99999988764 47899999 887653
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.25 E-value=6.7e-05 Score=39.39 Aligned_cols=70 Identities=6% Similarity=0.024 Sum_probs=57.1
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
..+..+++++++..+++...++.+..||...... -..+.++++.++++++++...++.|.+++....+..
T Consensus 192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 5578899999998888888888999999865543 246899999999998888888999999998776543
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.22 E-value=3e-05 Score=41.62 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=53.2
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
...++..+++..+++...++.+..||.. ++. ...+..+...+++..++++..++.+..+|..+++.
T Consensus 127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 3345678899999999999999999987 544 44667788889999888888888899999887765
No 184
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.19 E-value=1e-05 Score=44.66 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=48.4
Q ss_pred EEEEEEccCCCE--EEEeC-------------CCCcEEEEeCCC-CCC-----------CCCEEEEEEccCCCEEEEecC
Q psy16880 16 VRSISFCSKQHT--LISGG-------------DDGSICMWNLNS-KLC-----------DSAVRSISFCSKQRTLISGGD 68 (84)
Q Consensus 16 v~~~~~~~~~~~--l~~~~-------------~~~~~~~~d~~~-~~~-----------~~~v~~~~~~~~~~~~~~~~~ 68 (84)
...++++|+++. +++++ .++.+.+|++.. +.. ...+..++|+|+++.++++..
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 345788999984 44554 688999999863 222 246889999999998776653
Q ss_pred -CCcEEEEeCC-CCe
Q psy16880 69 -DGSICMWNLN-SKL 81 (84)
Q Consensus 69 -~~~i~~~~~~-~~~ 81 (84)
++.|.+|++. +++
T Consensus 165 ~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 165 TANKLWTHRKLASGE 179 (365)
T ss_dssp TTTEEEEEEECTTSC
T ss_pred CCCEEEEEEECCCCC
Confidence 6789999987 554
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.09 E-value=0.00021 Score=39.04 Aligned_cols=65 Identities=8% Similarity=0.100 Sum_probs=49.1
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc-CCCEEEEe----cCCCcEEEEeCCCC
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS-KQRTLISG----GDDGSICMWNLNSK 80 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~-~~~~~~~~----~~~~~i~~~~~~~~ 80 (84)
....++++|+++.+..+.. .+.+||..+... .....+++++| ++...++. ..++.|.+||.. +
T Consensus 226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g 302 (328)
T 3dsm_A 226 WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G 302 (328)
T ss_dssp CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence 4678999999888877665 788999876543 14688999998 56655665 567889999987 5
Q ss_pred ee
Q psy16880 81 LC 82 (84)
Q Consensus 81 ~~ 82 (84)
+.
T Consensus 303 ~~ 304 (328)
T 3dsm_A 303 KL 304 (328)
T ss_dssp CE
T ss_pred CE
Confidence 43
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.07 E-value=9.7e-05 Score=41.33 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=50.3
Q ss_pred EEEEccCCCEEEEeCC----------CCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEec-CCCcEEEEeCCC
Q psy16880 18 SISFCSKQHTLISGGD----------DGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGG-DDGSICMWNLNS 79 (84)
Q Consensus 18 ~~~~~~~~~~l~~~~~----------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~ 79 (84)
.+.++|++..+..+.. .+.+.++|..+... .....++.|+|+++ .+++.. .++.+.++|..+
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 3677888777666532 34788889877655 55689999999998 666666 489999999998
Q ss_pred Ceec
Q psy16880 80 KLCD 83 (84)
Q Consensus 80 ~~~~ 83 (84)
++.+
T Consensus 351 ~~vv 354 (373)
T 2mad_H 351 GDQD 354 (373)
T ss_pred CCEE
Confidence 8765
No 187
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.06 E-value=5.1e-05 Score=41.76 Aligned_cols=70 Identities=10% Similarity=-0.074 Sum_probs=48.5
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEE--EccCCCEEEEe-----------------
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSIS--FCSKQRTLISG----------------- 66 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~--~~~~~~~~~~~----------------- 66 (84)
...+....|+|+++.|+.+..+..+.+||+.+... ...+.... ++|++..++..
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 44444668999999999999888999999987654 22232233 47888877632
Q ss_pred -----cCCCcEEEEeCCCCee
Q psy16880 67 -----GDDGSICMWNLNSKLC 82 (84)
Q Consensus 67 -----~~~~~i~~~~~~~~~~ 82 (84)
..+..|.+||+.+++.
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCE
T ss_pred hhhccCCcceEEEEECCCCce
Confidence 2345788899887653
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.04 E-value=0.00014 Score=39.00 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=54.2
Q ss_pred CCceEEEeccCCC-cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecC-CC
Q psy16880 1 DGSIIHTFVHSNN-SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGD-DG 70 (84)
Q Consensus 1 ~g~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~-~~ 70 (84)
+|+.++++..+ . ..+..+.+.|+++.+++ .+..+..||. ++.. ...+..+.+.+++..+++.+. ++
T Consensus 24 tG~~~w~~~~~-~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~ 99 (276)
T 3no2_A 24 TKEIVWEYPLE-KGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS 99 (276)
T ss_dssp TTEEEEEEECC-TTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred CCeEEEEeCCC-ccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence 57888888775 4 46788899999998884 3566888887 4433 246788889999998888776 66
Q ss_pred cEEEEeC
Q psy16880 71 SICMWNL 77 (84)
Q Consensus 71 ~i~~~~~ 77 (84)
.+..++.
T Consensus 100 ~v~~vd~ 106 (276)
T 3no2_A 100 TILEVNM 106 (276)
T ss_dssp EEEEECT
T ss_pred EEEEEeC
Confidence 6776665
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.03 E-value=0.0001 Score=41.70 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=49.9
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
.+ |..++| ++..|+.+ .++.+.+||+..... +..+..+.+.+. .++++..+|.+.+|++.++.
T Consensus 88 p~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 88 PD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp TT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred CC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence 55 999999 88888888 789999999876544 455777666543 38888899999999998654
No 190
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.02 E-value=0.00029 Score=38.41 Aligned_cols=77 Identities=9% Similarity=0.044 Sum_probs=56.8
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC--C---------------CCCEEEEEEcc-CCCEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL--C---------------DSAVRSISFCS-KQRTL 63 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~--~---------------~~~v~~~~~~~-~~~~~ 63 (84)
|+.+..+...+......+++++++.++++...++.+..||..... . -..+..+++.| ++.++
T Consensus 79 g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 79 AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp CCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred CeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence 444444432213467889999999999998889999999986542 1 12588999999 78877
Q ss_pred EEec-CCCcEEEEeCC
Q psy16880 64 ISGG-DDGSICMWNLN 78 (84)
Q Consensus 64 ~~~~-~~~~i~~~~~~ 78 (84)
++.+ .++.|.+|+..
T Consensus 159 v~d~~~~~~I~~~~~~ 174 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPS 174 (329)
T ss_dssp EEECSSCCEEEEECTT
T ss_pred EEeCCCCCeEEEEcCC
Confidence 7776 58899999854
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.02 E-value=7.3e-05 Score=44.67 Aligned_cols=64 Identities=5% Similarity=0.066 Sum_probs=48.6
Q ss_pred EEEEEEccCCCEEEEeCCCCc----------------EEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecC
Q psy16880 16 VRSISFCSKQHTLISGGDDGS----------------ICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGD 68 (84)
Q Consensus 16 v~~~~~~~~~~~l~~~~~~~~----------------~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~ 68 (84)
+..++|+|+++.|+.+..+.. +.+|++.+... ...+..+.|+|+++.++..+.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 457899999998887766554 88999876542 123678999999998876654
Q ss_pred -----CCcEEEEeCCC
Q psy16880 69 -----DGSICMWNLNS 79 (84)
Q Consensus 69 -----~~~i~~~~~~~ 79 (84)
+..+.+||+.+
T Consensus 253 ~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CSSSSCCEEEEEEGGG
T ss_pred ccCCCccEEEEEECcc
Confidence 56799999865
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.01 E-value=0.00013 Score=39.92 Aligned_cols=77 Identities=6% Similarity=0.004 Sum_probs=54.5
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCC----------CcEEEEeCCCCCC--------CCCEEEEEEccCCCEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDD----------GSICMWNLNSKLC--------DSAVRSISFCSKQRTL 63 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~ 63 (84)
++.+..++.. . ....+.++++++++++...+ +.+.++|..+... ......++++|++..+
T Consensus 162 ~~~~~~i~~g-~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 162 DKVVDELTIG-I-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTL 239 (328)
T ss_dssp TEEEEEEECS-S-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEE
T ss_pred CeEEEEEEcC-C-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEE
Confidence 3444444432 2 23577889999887777654 7899999876544 2358899999988888
Q ss_pred EEecCCCcEEEEeCCCCee
Q psy16880 64 ISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 64 ~~~~~~~~i~~~~~~~~~~ 82 (84)
..... .+.+||..+++.
T Consensus 240 yv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 240 YWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EEESS--SEEEEETTCSSC
T ss_pred EEEcc--EEEEEECCCCce
Confidence 77654 899999877653
No 193
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.96 E-value=3.4e-05 Score=44.10 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=58.3
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C--------CCEEEEEEc
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D--------SAVRSISFC 57 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~--------~~v~~~~~~ 57 (84)
++.+.+++.- ..+ .+.++|+++.+..++ .++.+.++|..+... . .....+.++
T Consensus 109 ~~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s 185 (426)
T 3c75_H 109 GRILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT 185 (426)
T ss_dssp TEEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred CEEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence 4556666654 445 789999998877765 356899999987655 1 124568899
Q ss_pred cCCCEEEEecC--CCcEEEEeCCCCeec
Q psy16880 58 SKQRTLISGGD--DGSICMWNLNSKLCD 83 (84)
Q Consensus 58 ~~~~~~~~~~~--~~~i~~~~~~~~~~~ 83 (84)
|+++.++.... ++.+.+.|+.+++.+
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence 99998887754 578999999988754
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.93 E-value=0.00011 Score=43.35 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=49.2
Q ss_pred cCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC--CCee
Q psy16880 23 SKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLN--SKLC 82 (84)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 82 (84)
+.+..+++...++.+.++|..+... ...+..+.++|+++.+++++.++.+.+||+. +.+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~ 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE
Confidence 4456777888899999999987655 4567899999999999999999999999995 5443
No 195
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.92 E-value=9.1e-05 Score=40.74 Aligned_cols=69 Identities=6% Similarity=-0.074 Sum_probs=47.4
Q ss_pred CcCEEEEEEcc-CCCEEEEeCCC------CcEEEEeCCCCCC----C----CCEEEEEEccCCCEEEEecCC-----CcE
Q psy16880 13 NSAVRSISFCS-KQHTLISGGDD------GSICMWNLNSKLC----D----SAVRSISFCSKQRTLISGGDD-----GSI 72 (84)
Q Consensus 13 ~~~v~~~~~~~-~~~~l~~~~~~------~~~~~~d~~~~~~----~----~~v~~~~~~~~~~~~~~~~~~-----~~i 72 (84)
...+..+.|+| ++..++....+ ..+.+||...... . ..+..+.|+|+++.++..+.+ +.|
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 56678899999 77766544332 3577888765433 2 147778999999877666433 349
Q ss_pred EEEeCCCCe
Q psy16880 73 CMWNLNSKL 81 (84)
Q Consensus 73 ~~~~~~~~~ 81 (84)
.+||+.+++
T Consensus 267 ~~~d~~~g~ 275 (396)
T 3c5m_A 267 YKANPETLE 275 (396)
T ss_dssp EEECTTTCC
T ss_pred EEEECCCCC
Confidence 999987765
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.90 E-value=0.00052 Score=37.13 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=48.6
Q ss_pred CcCEEEEEEccCCCEEEEeCCC----CcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecC------CCcEE
Q psy16880 13 NSAVRSISFCSKQHTLISGGDD----GSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGD------DGSIC 73 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~----~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~------~~~i~ 73 (84)
...+..+++++++.++++...+ +.+.+||...... ...+..+.+.|++..+++... .+.+.
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 5678999999999988877666 6788898765433 246889999999987776543 24465
Q ss_pred EEeCCC
Q psy16880 74 MWNLNS 79 (84)
Q Consensus 74 ~~~~~~ 79 (84)
.++..+
T Consensus 166 ~~~~~~ 171 (333)
T 2dg1_A 166 YVSPDF 171 (333)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 666554
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.77 E-value=0.00021 Score=42.71 Aligned_cols=64 Identities=8% Similarity=-0.017 Sum_probs=48.0
Q ss_pred EEEEEccCCCEEEEeCCCCc-------------EEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCC--
Q psy16880 17 RSISFCSKQHTLISGGDDGS-------------ICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDG-- 70 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~-------------~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~-- 70 (84)
..++|+|+++.|+.++.+.. +.+|++.+... ...+..+.|+|+++.++..+.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 57899999999888877654 99999876542 24678999999999887766554
Q ss_pred --cEEEEeCCCC
Q psy16880 71 --SICMWNLNSK 80 (84)
Q Consensus 71 --~i~~~~~~~~ 80 (84)
.+.+++..++
T Consensus 251 ~~~l~~~~~~~~ 262 (695)
T 2bkl_A 251 ENDVYWKRPGEK 262 (695)
T ss_dssp EEEEEEECTTCS
T ss_pred ceEEEEEcCCCC
Confidence 5666665443
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.76 E-value=0.00083 Score=35.21 Aligned_cols=66 Identities=8% Similarity=0.066 Sum_probs=52.3
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
.+..+++++++..+++...++.+..||...... -..+.++++.+++.+.++...++.|.+|+....
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 457889999999888777778999999875433 256889999999977777767888999988654
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.75 E-value=5.6e-05 Score=45.41 Aligned_cols=66 Identities=8% Similarity=0.082 Sum_probs=47.5
Q ss_pred CEEEEEEccCCCEEEEeCCC-----CcEEEEeCCCCCC-C---C--CEEEEEEccCCCEEEEecCCCc------------
Q psy16880 15 AVRSISFCSKQHTLISGGDD-----GSICMWNLNSKLC-D---S--AVRSISFCSKQRTLISGGDDGS------------ 71 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~-----~~~~~~d~~~~~~-~---~--~v~~~~~~~~~~~~~~~~~~~~------------ 71 (84)
.+..++|+|+++.++.+..+ ..+.+||+.++.. . . .+..++|+|+ +.++.+..+..
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 56788999999988766443 4689999987655 1 1 1257889999 88887765443
Q ss_pred --EEEEeCCCCe
Q psy16880 72 --ICMWNLNSKL 81 (84)
Q Consensus 72 --i~~~~~~~~~ 81 (84)
|.+|++.+++
T Consensus 243 ~~v~~~~lgt~~ 254 (741)
T 1yr2_A 243 QTVWLHRLGTPQ 254 (741)
T ss_dssp CEEEEEETTSCG
T ss_pred CEEEEEECCCCc
Confidence 8888876543
No 200
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.73 E-value=0.00029 Score=39.58 Aligned_cols=65 Identities=3% Similarity=-0.063 Sum_probs=48.9
Q ss_pred EEEccCCCEEEEeCC---------CCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEec-CCCcEEEEeCCCCe
Q psy16880 19 ISFCSKQHTLISGGD---------DGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGG-DDGSICMWNLNSKL 81 (84)
Q Consensus 19 ~~~~~~~~~l~~~~~---------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~ 81 (84)
+.++|+++.+..+.. ...+.++|..+... .....++.|+|+++ .+++.. .++.+.++|+.+.+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 678999887765432 23556999987765 44688999999987 455555 48999999999988
Q ss_pred ec
Q psy16880 82 CD 83 (84)
Q Consensus 82 ~~ 83 (84)
.+
T Consensus 349 vv 350 (368)
T 1mda_H 349 DQ 350 (368)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.72 E-value=0.0011 Score=35.46 Aligned_cols=66 Identities=8% Similarity=0.206 Sum_probs=50.7
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCCC
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNS 79 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~ 79 (84)
.....+++++++..+++...++.+..||..+... ...+.++++.|++..+ ++...++.|..|++..
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 4567889999999888877788899999874433 3678999999999844 4555567899998754
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.72 E-value=0.0001 Score=42.13 Aligned_cols=65 Identities=8% Similarity=0.067 Sum_probs=50.6
Q ss_pred EEEccCCCEEEEeCC----------CCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEec-CCCcEEEEeCCCC
Q psy16880 19 ISFCSKQHTLISGGD----------DGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGG-DDGSICMWNLNSK 80 (84)
Q Consensus 19 ~~~~~~~~~l~~~~~----------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~ 80 (84)
++++|++..+..... .+.+.+.|..+... .....++.|+|+++ .+++.. .++.+.++|..+.
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 678888776665532 34799999987766 45688999999998 777776 4899999999988
Q ss_pred eec
Q psy16880 81 LCD 83 (84)
Q Consensus 81 ~~~ 83 (84)
+.+
T Consensus 404 kvv 406 (426)
T 3c75_H 404 EEL 406 (426)
T ss_dssp CEE
T ss_pred CEE
Confidence 765
No 203
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.70 E-value=4.6e-05 Score=42.75 Aligned_cols=75 Identities=8% Similarity=-0.028 Sum_probs=54.9
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C--------CCEEEEEEc
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D--------SAVRSISFC 57 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~--------~~v~~~~~~ 57 (84)
++.+.++... ..+ .+.++|+++.+..++ .++.+.+||..+... . .....+.++
T Consensus 56 ~~v~~~i~vG-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S 132 (368)
T 1mda_H 56 GVTLGHSLGA-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TEEEEEEEEC-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CeEEEEEeCC-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence 5566666665 455 689999998877775 367899999988766 2 235689999
Q ss_pred cCCCEEEEecC--CCcEEE--EeCCC
Q psy16880 58 SKQRTLISGGD--DGSICM--WNLNS 79 (84)
Q Consensus 58 ~~~~~~~~~~~--~~~i~~--~~~~~ 79 (84)
|++++++.+.. +..+.+ +|..+
T Consensus 133 pDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 133 ASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCCCEEEEEccCCCCeEEEEEEchhh
Confidence 99998887754 356777 77643
No 204
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.60 E-value=0.0018 Score=34.62 Aligned_cols=59 Identities=5% Similarity=-0.033 Sum_probs=44.6
Q ss_pred EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEE
Q psy16880 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLIS 65 (84)
Q Consensus 6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~ 65 (84)
..+..+ ...+..+++++++.++++...++.+.+||..++.. ...+..+++.|+++++++
T Consensus 62 ~~~~~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 62 SPEMHP-SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS 131 (296)
T ss_dssp EEEESS-CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred EEEECC-CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence 344444 56788999999999888887778899999855443 234567999999988776
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.54 E-value=0.00021 Score=42.82 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=48.2
Q ss_pred CcCEEEEEEccCCCEEEE-----eCCCCcEEEEeCCCCCC-----CCC-EEEEEEccCCCEEEEecCCC-----------
Q psy16880 13 NSAVRSISFCSKQHTLIS-----GGDDGSICMWNLNSKLC-----DSA-VRSISFCSKQRTLISGGDDG----------- 70 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~-----~~~~~~~~~~d~~~~~~-----~~~-v~~~~~~~~~~~~~~~~~~~----------- 70 (84)
...+..++|+|+++.++- |+....+.++|+.++.. ... ...++|+ +++.++.+..+.
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 345778899999998873 34445788999987764 111 3567899 998888776653
Q ss_pred --cEEEEeCCCCe
Q psy16880 71 --SICMWNLNSKL 81 (84)
Q Consensus 71 --~i~~~~~~~~~ 81 (84)
.|.+|++.+..
T Consensus 207 ~~~v~~~~lgt~~ 219 (693)
T 3iuj_A 207 QHKVYFHRLGTAQ 219 (693)
T ss_dssp CCEEEEEETTSCG
T ss_pred CcEEEEEECCCCc
Confidence 38888876543
No 206
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.47 E-value=0.003 Score=34.06 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=49.5
Q ss_pred CcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880 13 NSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLN 78 (84)
Q Consensus 13 ~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (84)
........|+++++ ++.+...++.+..|+...... ...+.++.+.++++++++...++.|.+|+..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 45567889999988 667777888899998743211 4568899999999876665556778888764
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.45 E-value=0.0032 Score=33.88 Aligned_cols=68 Identities=3% Similarity=0.043 Sum_probs=49.9
Q ss_pred CEEEEEEccCCCEE-EEeCCCCcEEEEeCC--CCCC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880 15 AVRSISFCSKQHTL-ISGGDDGSICMWNLN--SKLC------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 15 ~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~--~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (84)
....++|+|+++.+ ++....+.+..||+. .+.. ...+.++++.+++.+.++....+.|..||..+
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 35688999999865 555667889999874 2211 24578899999998777766677899999886
Q ss_pred Cee
Q psy16880 80 KLC 82 (84)
Q Consensus 80 ~~~ 82 (84)
++.
T Consensus 230 G~~ 232 (297)
T 3g4e_A 230 GKR 232 (297)
T ss_dssp CCE
T ss_pred ceE
Confidence 654
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.39 E-value=0.0036 Score=33.10 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=52.0
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN 78 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (84)
...+.++++.+++..+++...++.+..||.. ... ...+..+++.+++...++...++.|..|+..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 5678999999999988887777889999876 322 3468899999999877776667888888865
No 209
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.39 E-value=0.0014 Score=35.64 Aligned_cols=61 Identities=5% Similarity=0.017 Sum_probs=43.0
Q ss_pred CcCEEE-EEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcE-EEEeCC
Q psy16880 13 NSAVRS-ISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSI-CMWNLN 78 (84)
Q Consensus 13 ~~~v~~-~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 78 (84)
...+.. +.|+ ++ .+++++.++...+| +..+.. ...+..++|+| ..+++.+.++.. .+|.+.
T Consensus 262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 566775 8898 88 88888999999999 763322 45688899998 566666555443 566543
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.28 E-value=0.0013 Score=37.28 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=48.7
Q ss_pred EEEEccCCCEEEEeCC----------CCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEe-cCCCcEEEEeCCC
Q psy16880 18 SISFCSKQHTLISGGD----------DGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISG-GDDGSICMWNLNS 79 (84)
Q Consensus 18 ~~~~~~~~~~l~~~~~----------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~ 79 (84)
.+++++++..+..... ...+.+.|..+.+. ...+..+.++++++ .+++. ..++.+.++|..+
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 3566787777665532 24688889887766 55778999999986 55554 4588999999998
Q ss_pred Ceec
Q psy16880 80 KLCD 83 (84)
Q Consensus 80 ~~~~ 83 (84)
++.+
T Consensus 364 ~k~~ 367 (386)
T 3sjl_D 364 GEEL 367 (386)
T ss_dssp CCEE
T ss_pred CcEE
Confidence 8765
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.24 E-value=0.0035 Score=35.53 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=49.4
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCC--cEEEEeCCC
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDG--SICMWNLNS 79 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~ 79 (84)
.....|++++++.++++...++.+..||...... ..... ++|++++..++.+..++ .|.+++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence 3567899999999888888888999999876544 22334 89999998888777655 677777643
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.15 E-value=0.0081 Score=32.29 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=50.2
Q ss_pred CcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 13 NSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 13 ~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
...-....|+++ +.++.+....+.+..||..+... ...+.++++.++++++++. ++.|.+||..+++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence 344568889995 55677777788999999876544 5678999999999855543 5678899987654
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.10 E-value=0.005 Score=37.23 Aligned_cols=63 Identities=8% Similarity=0.148 Sum_probs=45.2
Q ss_pred EEEEEccCCCEEEEeCCCC--------------cEEEEeCCCCCC--------C---CCEEEEEEccCCCEEEEecCC--
Q psy16880 17 RSISFCSKQHTLISGGDDG--------------SICMWNLNSKLC--------D---SAVRSISFCSKQRTLISGGDD-- 69 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~--------------~~~~~d~~~~~~--------~---~~v~~~~~~~~~~~~~~~~~~-- 69 (84)
..++|+|+ +.|+.+..+. .+.+|++.+... . ..+..+.|+|+++.++..+.+
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 46789999 8777765544 377888865542 1 247889999999988766543
Q ss_pred ---CcEEEEeCCCC
Q psy16880 70 ---GSICMWNLNSK 80 (84)
Q Consensus 70 ---~~i~~~~~~~~ 80 (84)
..+.+||+.++
T Consensus 291 ~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 291 DPVNTVHVARVTNG 304 (741)
T ss_dssp CSCCEEEEEEEETT
T ss_pred CCcceEEEEECCCC
Confidence 37899988655
No 214
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.05 E-value=0.00074 Score=37.65 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=36.0
Q ss_pred CCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 24 KQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 24 ~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
++..+++++.++.+..||..++.. ...+....+..++..++.++.++.+..||..+++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 567888889999999999887665 22222333344566677778899999999877654
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.99 E-value=0.013 Score=31.96 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=47.4
Q ss_pred CEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 15 AVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 15 ~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
......|+|+ +..+.+....+.+..||...... ...+.++.+.+++++++.. . ..+.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCc
Confidence 3467889996 45666777778899999876543 4678999999998866654 3 348888876654
No 216
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.91 E-value=0.014 Score=30.84 Aligned_cols=65 Identities=11% Similarity=-0.077 Sum_probs=49.9
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN 78 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (84)
...+..+++.+++..+++....+.+..||. .... ...+.++++.+++...++...++.|..|+..
T Consensus 182 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 182 ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 455778999999998887777788988988 3332 2568899999998866665567889999873
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.90 E-value=0.00039 Score=38.74 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=36.7
Q ss_pred EEccCCCEEEEeCCCCcEEEEeCCCCCCCCCEE-----EEEEccCC---CEEEEecCCCcEEEEeCCCCee
Q psy16880 20 SFCSKQHTLISGGDDGSICMWNLNSKLCDSAVR-----SISFCSKQ---RTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~v~-----~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
..+|++..++.++.++.+..||..++....... ...+.++. ..++.++.++.+..||.++++.
T Consensus 125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred cccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 345677788888888999999998766511111 11122211 3466777889999999988764
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.85 E-value=0.014 Score=32.06 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=48.0
Q ss_pred CcCEEEEEEccCCCEEEEeCC-----CCcEEEEeCCCCCC-------------CCCEEEEEEccCC-CEEEEec---CCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGD-----DGSICMWNLNSKLC-------------DSAVRSISFCSKQ-RTLISGG---DDG 70 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~-----~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~-~~~~~~~---~~~ 70 (84)
...+..++++++++++++-.. ...+..||..+... ...+..+++.+++ ...++-. .++
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence 456889999999887665433 46888999876542 1245788998754 4444544 567
Q ss_pred cEEEEeCCCCe
Q psy16880 71 SICMWNLNSKL 81 (84)
Q Consensus 71 ~i~~~~~~~~~ 81 (84)
.|.+||+.+++
T Consensus 146 ~i~v~d~~~g~ 156 (343)
T 2qe8_A 146 ALIRVDLQTGL 156 (343)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCC
Confidence 89999987654
No 219
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.84 E-value=0.017 Score=30.87 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=47.1
Q ss_pred CcCEEEEEEccCCCEEEE-------eCCCCcEEEEeCCCCCC----C-------CCEEEEEEccC-CCEEEEecCCCcEE
Q psy16880 13 NSAVRSISFCSKQHTLIS-------GGDDGSICMWNLNSKLC----D-------SAVRSISFCSK-QRTLISGGDDGSIC 73 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~-------~~~~~~~~~~d~~~~~~----~-------~~v~~~~~~~~-~~~~~~~~~~~~i~ 73 (84)
......++|++++..+++ ...++.+..||..+... . ..+.++.+.++ +.++++.. .+.+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 344578999999988887 56678899998755443 2 56888999998 76555443 44688
Q ss_pred EEeCC
Q psy16880 74 MWNLN 78 (84)
Q Consensus 74 ~~~~~ 78 (84)
+|+..
T Consensus 96 ~~d~~ 100 (314)
T 1pjx_A 96 VVQTD 100 (314)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 88876
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.81 E-value=0.024 Score=32.18 Aligned_cols=64 Identities=6% Similarity=0.037 Sum_probs=48.8
Q ss_pred EEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-----C---------------CCEEEEEEccCCCEEEEec-CCCcEEEE
Q psy16880 18 SISFCS-KQHTLISGGDDGSICMWNLNSKLC-----D---------------SAVRSISFCSKQRTLISGG-DDGSICMW 75 (84)
Q Consensus 18 ~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-----~---------------~~v~~~~~~~~~~~~~~~~-~~~~i~~~ 75 (84)
.++++| ++.++++-...+.+..|+...... . .....+++.+++.+.++-. .++.|+.|
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 889999 466777777788899888764211 1 3478999999999777777 78899999
Q ss_pred eCCCCe
Q psy16880 76 NLNSKL 81 (84)
Q Consensus 76 ~~~~~~ 81 (84)
++.++.
T Consensus 351 ~~~~G~ 356 (409)
T 3hrp_A 351 DILDGY 356 (409)
T ss_dssp ETTTTE
T ss_pred ECCCCE
Confidence 976654
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.75 E-value=0.0035 Score=37.78 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=35.8
Q ss_pred CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 35 GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 35 ~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
+.+..||+.+++. ...+....+...+..++.++.++.+++||.++++.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 6788899887765 222333444556667888888999999999998865
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.75 E-value=0.0036 Score=37.85 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=35.6
Q ss_pred CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 35 GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 35 ~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
+.+..||+.+++. ......-.+...+..++.++.|+.++.||.++++.+
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 6688899987765 222222344445667888899999999999998864
No 223
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.66 E-value=0.026 Score=30.53 Aligned_cols=68 Identities=9% Similarity=0.168 Sum_probs=47.8
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCC--cEEEEeCCCCe
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDG--SICMWNLNSKL 81 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~ 81 (84)
.....++|++++.++++-...+.+..+|...... ...+.++++.++++.+++....+ .+..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 4567899999999888877888888888764322 45688899999998655543322 36666665544
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.58 E-value=0.02 Score=31.42 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=45.8
Q ss_pred cCEEEEEEccCCCEEEEeC--CCCcEEEEeCCCCCC-------------CCCEEEEEEccCCCEEEEecC-----CCcEE
Q psy16880 14 SAVRSISFCSKQHTLISGG--DDGSICMWNLNSKLC-------------DSAVRSISFCSKQRTLISGGD-----DGSIC 73 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~--~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~-----~~~i~ 73 (84)
.....++++++++.+++.. .++..++|.+..+.. -..+.++++.+++++.++-.. +..|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 4678899999999988853 223234444322211 246899999999876555433 57899
Q ss_pred EEeCCCCee
Q psy16880 74 MWNLNSKLC 82 (84)
Q Consensus 74 ~~~~~~~~~ 82 (84)
+||+.+++.
T Consensus 97 ~~d~~tg~~ 105 (343)
T 2qe8_A 97 AWDTLNNQL 105 (343)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCeE
Confidence 999987763
No 225
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.56 E-value=0.028 Score=29.67 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=51.5
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN 78 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (84)
...+..+.+.+++..+++...++.+..||.. ... ...+..+++.+++...++...++.|..+|..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 4567899999999988888778889999876 322 2568899999988877776667788888876
No 226
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.49 E-value=0.032 Score=29.46 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=50.3
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN 78 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (84)
...+..+++.+++..+++...++.+..+|.. ... ...+..+++.+++...++...++.+..++..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence 3567889999999988887777888888876 322 3568899999988877776667788888776
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.46 E-value=0.037 Score=29.94 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=48.8
Q ss_pred ceEEEeccCCC-cCEEEEEEccCCCEEEEeCC--CCcEEEEeCCCCCC------CCCE--EEEEEccCCCEEE-EecCCC
Q psy16880 3 SIIHTFVHSNN-SAVRSISFCSKQHTLISGGD--DGSICMWNLNSKLC------DSAV--RSISFCSKQRTLI-SGGDDG 70 (84)
Q Consensus 3 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--~~~~~~~d~~~~~~------~~~v--~~~~~~~~~~~~~-~~~~~~ 70 (84)
+.+.++..- . .....+.|++++.++.+.+. ...+.++|..+... .... ..+.+. +..+. +.-.++
T Consensus 10 ~vv~~~p~~-~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFPHD-PYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEECC-TTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEECC-CCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 345555332 2 23578999988766665543 57899999987765 2222 234443 43444 444578
Q ss_pred cEEEEeCCCCeec
Q psy16880 71 SICMWNLNSKLCD 83 (84)
Q Consensus 71 ~i~~~~~~~~~~~ 83 (84)
.+.++|..+.+.+
T Consensus 87 ~v~viD~~t~~v~ 99 (266)
T 2iwa_A 87 IGFIYDRRTLSNI 99 (266)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCcEE
Confidence 8999999887654
No 228
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.37 E-value=0.033 Score=33.57 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=48.5
Q ss_pred EEEEEEccCCCEEE-EeCCCCcEEEEeCCCCC------------C------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 16 VRSISFCSKQHTLI-SGGDDGSICMWNLNSKL------------C------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 16 v~~~~~~~~~~~l~-~~~~~~~~~~~d~~~~~------------~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
...+.++|+|++++ ++.....+.++|..+.. . .....+++|+|++....+.-.++.+.+||
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence 35789999998665 55577799999998541 1 56789999999994334555689999999
Q ss_pred CCC
Q psy16880 77 LNS 79 (84)
Q Consensus 77 ~~~ 79 (84)
+..
T Consensus 359 i~~ 361 (595)
T 1fwx_A 359 IED 361 (595)
T ss_dssp HHH
T ss_pred hhH
Confidence 754
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.35 E-value=0.043 Score=29.53 Aligned_cols=52 Identities=4% Similarity=-0.028 Sum_probs=38.8
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEE
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLIS 65 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~ 65 (84)
...+..++++++++++++....+.+..|+.. +.. ...+..+.+.+++++.++
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence 5567889999999987776666788888875 222 234567899999987776
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.27 E-value=0.04 Score=32.20 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=47.0
Q ss_pred EEEEEccCCCEEEEeCCC------CcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEec-------------
Q psy16880 17 RSISFCSKQHTLISGGDD------GSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGG------------- 67 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~------~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~------------- 67 (84)
..+...|++ .++++..+ +.+.+.|..+... ...-+.+-|+|+++.+++..
T Consensus 141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence 455678888 66666544 6899999886655 12234578899999888774
Q ss_pred ------CCCcEEEEeCCCCee
Q psy16880 68 ------DDGSICMWNLNSKLC 82 (84)
Q Consensus 68 ------~~~~i~~~~~~~~~~ 82 (84)
..++|.+||+.+++.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEE
T ss_pred hhhhhccCCEEEEEECCCCcE
Confidence 368999999987754
No 231
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.19 E-value=0.045 Score=29.28 Aligned_cols=57 Identities=7% Similarity=-0.024 Sum_probs=37.3
Q ss_pred CCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 25 QHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 25 ~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.+.+.....++.+.++|..+... ...-.+++ +++..+..+..++.|.++|+.+.+.+
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQV 137 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEE
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEE
Confidence 34455556778899999987655 22222333 45555666566888999999886643
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.16 E-value=0.058 Score=29.19 Aligned_cols=65 Identities=2% Similarity=-0.077 Sum_probs=40.7
Q ss_pred EEEEccCCCEEEEeCCCCcEEEEeCCCCCC----C-CCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 18 SISFCSKQHTLISGGDDGSICMWNLNSKLC----D-SAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.+++. .+..+.+...++.+.++|..+... . ..-....+++++..++.+..++.+.+.|..+.+.+
T Consensus 70 Gi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 70 GLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLI 139 (266)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEE
T ss_pred EEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEE
Confidence 34443 234556666788999999886654 1 10122335556666666666889999999886643
No 233
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.14 E-value=0.014 Score=35.63 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=43.8
Q ss_pred CEEEEEEc-cCCCEEEEeC-CC----CcEEEEeCCCC-CC-----CCCEEEEEEccCCCEEEEecCC-----CcEEEEeC
Q psy16880 15 AVRSISFC-SKQHTLISGG-DD----GSICMWNLNSK-LC-----DSAVRSISFCSKQRTLISGGDD-----GSICMWNL 77 (84)
Q Consensus 15 ~v~~~~~~-~~~~~l~~~~-~~----~~~~~~d~~~~-~~-----~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~ 77 (84)
.+...+|+ |+++.++-.. .. ..+.++|+.++ .. ......+.|+|+++.++....+ ..|..+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 46778999 9999776432 22 35889999876 43 1223467899999877766544 24666676
Q ss_pred CCC
Q psy16880 78 NSK 80 (84)
Q Consensus 78 ~~~ 80 (84)
.++
T Consensus 255 gt~ 257 (751)
T 2xe4_A 255 GKL 257 (751)
T ss_dssp TSC
T ss_pred CCC
Confidence 554
No 234
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.07 E-value=0.04 Score=29.84 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=35.8
Q ss_pred CEEEEeCCCCcEEEEeCCCCCC----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 26 HTLISGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 26 ~~l~~~~~~~~~~~~d~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
+.......++.+.++|..+... .-.-.+..+++++..+.....++.|.++|+.+.+.
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v 158 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTP 158 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSE
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeE
Confidence 3444455678899999987655 10112223334566666666678899999987654
No 235
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=95.84 E-value=0.12 Score=32.71 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=29.6
Q ss_pred CCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
..+.++...++...+.+.+.|+++++|++.+++++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 35667777778889999999999999999998875
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.63 E-value=0.11 Score=28.17 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=43.9
Q ss_pred EEEEEEccCCCEEEEeCCCC--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCCCeec
Q psy16880 16 VRSISFCSKQHTLISGGDDG--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNSKLCD 83 (84)
Q Consensus 16 v~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 83 (84)
...+.|+ ++.++.+.+..+ .++.+|..+++. ..........+.+..+.... .++.+.++|..+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 4667777 666777777665 889999988766 33333333333344454444 4788999999887654
No 237
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=95.48 E-value=0.13 Score=28.07 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=45.7
Q ss_pred cCEEEEEEccCCCEE-EEeCCCCcEEEEeCC--CC-CC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880 14 SAVRSISFCSKQHTL-ISGGDDGSICMWNLN--SK-LC------------DSAVRSISFCSKQRTLISGGDDGSICMWNL 77 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~--~~-~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (84)
.....++|+|+++.+ ++....+.+.+||+. .+ .. ...+..+++.+++.+.++...++.|..|+.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 345688999999865 455567789999975 33 21 234677888888886666555678999987
Q ss_pred C
Q psy16880 78 N 78 (84)
Q Consensus 78 ~ 78 (84)
.
T Consensus 259 ~ 259 (326)
T 2ghs_A 259 D 259 (326)
T ss_dssp T
T ss_pred C
Confidence 4
No 238
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.46 E-value=0.18 Score=29.50 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=47.7
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------CCCEEEEEEccC---CCEEEEe
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------DSAVRSISFCSK---QRTLISG 66 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------~~~v~~~~~~~~---~~~~~~~ 66 (84)
.|..+..+|+|.+|+..+.. .+.+-.+..+.. +..|..+.|+|- +..+++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 56788899999999877654 566555542210 256999999994 4578888
Q ss_pred cCCCcEEEEeCCC
Q psy16880 67 GDDGSICMWNLNS 79 (84)
Q Consensus 67 ~~~~~i~~~~~~~ 79 (84)
..|+.|++||+..
T Consensus 146 tsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 146 KEDDTITMFDILN 158 (452)
T ss_dssp ETTSCEEEEETTC
T ss_pred ecCCEEEEEEccc
Confidence 8899999999875
No 239
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=95.21 E-value=0.26 Score=29.88 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=43.3
Q ss_pred EEEEEccCCCEEEEeCCC-------------CcEEEEeCCCCCC--------CC----CEEEEEEccCCCEEEEec----
Q psy16880 17 RSISFCSKQHTLISGGDD-------------GSICMWNLNSKLC--------DS----AVRSISFCSKQRTLISGG---- 67 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~-------------~~~~~~d~~~~~~--------~~----~v~~~~~~~~~~~~~~~~---- 67 (84)
..++|+ +++.|+....+ ..+.+|++.+... .. ....+.++|+++.++...
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 466899 99888776655 3488888865542 22 367889999999775432
Q ss_pred CCCcEEEEeCCCC
Q psy16880 68 DDGSICMWNLNSK 80 (84)
Q Consensus 68 ~~~~i~~~~~~~~ 80 (84)
.++.+.++++.++
T Consensus 257 ~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 257 SGNRLYVKDLSQE 269 (693)
T ss_dssp SCCEEEEEETTST
T ss_pred CCcEEEEEECCCC
Confidence 2357899997654
No 240
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.17 E-value=0.085 Score=31.40 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=32.5
Q ss_pred CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 34 DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 34 ~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.+.+..||..+++. ...+........+..++.++.++.+..+|.++++.+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 46788888877655 112222222223456777888999999999988764
No 241
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.78 E-value=0.35 Score=29.16 Aligned_cols=65 Identities=12% Similarity=0.251 Sum_probs=43.4
Q ss_pred EEEEcc-CCCEEEEeCCCC-----------cEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecC-CCcEEE
Q psy16880 18 SISFCS-KQHTLISGGDDG-----------SICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGD-DGSICM 74 (84)
Q Consensus 18 ~~~~~~-~~~~l~~~~~~~-----------~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~-~~~i~~ 74 (84)
..++.+ +++.++.|+.+. .+.+||..+..- .....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455666 778888775432 467888876543 122334677788888888884 457999
Q ss_pred EeCCCCee
Q psy16880 75 WNLNSKLC 82 (84)
Q Consensus 75 ~~~~~~~~ 82 (84)
||+.+.+.
T Consensus 270 yd~~t~~W 277 (656)
T 1k3i_A 270 YDSSSDSW 277 (656)
T ss_dssp EEGGGTEE
T ss_pred ecCcCCce
Confidence 99876553
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.70 E-value=0.39 Score=29.33 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=44.1
Q ss_pred EEEEccCCCEEEEeCCCCc-------------------EEEEeCCCCCC-----C-----------CCEEEEEEccCCC-
Q psy16880 18 SISFCSKQHTLISGGDDGS-------------------ICMWNLNSKLC-----D-----------SAVRSISFCSKQR- 61 (84)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~-------------------~~~~d~~~~~~-----~-----------~~v~~~~~~~~~~- 61 (84)
.+++.|+...++.+..++. +..+|..++.. . ..........+++
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5678888888888877653 78889887665 0 0111111112343
Q ss_pred --EEEEecCCCcEEEEeCCCCeec
Q psy16880 62 --TLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 62 --~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.++.++.++.++++|..+++.+
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEEEECCCCeEEEEECCCCCEe
Confidence 5777888999999999998864
No 243
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.56 E-value=0.33 Score=27.87 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=44.6
Q ss_pred EEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCC
Q psy16880 17 RSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLN 78 (84)
Q Consensus 17 ~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 78 (84)
..++++| ++.++++-...+.+..++...... .....+++|+|+++.+ ++-...+.|..++..
T Consensus 229 ~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 229 NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 5677898 777777777778888888864432 2347889999999844 454556788887654
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.53 E-value=0.15 Score=32.91 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=26.7
Q ss_pred EEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 51 VRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 51 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
+.+++..++...+.+.+.|+++++|++.+++++
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 344455567788999999999999999998875
No 245
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=94.50 E-value=0.38 Score=28.30 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=42.7
Q ss_pred EEEEEccCCCEEEEeC-------------------CCCcEEEEeCCCCCC------C---CCEEEEEE--ccCCCEEEEe
Q psy16880 17 RSISFCSKQHTLISGG-------------------DDGSICMWNLNSKLC------D---SAVRSISF--CSKQRTLISG 66 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~-------------------~~~~~~~~d~~~~~~------~---~~v~~~~~--~~~~~~~~~~ 66 (84)
..+.|+|+++.+++.. ....|.+||+.+... . .....+.| +|+++...++
T Consensus 191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~ 270 (462)
T 2ece_A 191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFIN 270 (462)
T ss_dssp CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence 3477899999888874 367999999986543 2 24556656 8999888766
Q ss_pred c------CCCcEEEEeC
Q psy16880 67 G------DDGSICMWNL 77 (84)
Q Consensus 67 ~------~~~~i~~~~~ 77 (84)
+ .+++|.+|..
T Consensus 271 ~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 271 MVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp EEEETTTCCEEEEEEEE
T ss_pred EeeeccCCCceEEEEEe
Confidence 6 4557766543
No 246
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.47 E-value=0.4 Score=29.52 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=40.8
Q ss_pred EEEEccCCCEEEEeCCC-----CcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecC---CCcEEEEeCCC
Q psy16880 18 SISFCSKQHTLISGGDD-----GSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGD---DGSICMWNLNS 79 (84)
Q Consensus 18 ~~~~~~~~~~l~~~~~~-----~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~~ 79 (84)
.+.|+|+++.|+....+ ..+..+++.+... ......+.|+|+++.++.... ...+.++|+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 57899999876655443 2466677755421 233567889999998765442 34577778765
Q ss_pred C
Q psy16880 80 K 80 (84)
Q Consensus 80 ~ 80 (84)
+
T Consensus 305 ~ 305 (751)
T 2xe4_A 305 G 305 (751)
T ss_dssp C
T ss_pred C
Confidence 3
No 247
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=94.34 E-value=0.48 Score=28.88 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=43.3
Q ss_pred EEEEccCCCEEEEeCCCC-------------------cEEEEeCCCCCC-------C---------CCEEEEEEccCC--
Q psy16880 18 SISFCSKQHTLISGGDDG-------------------SICMWNLNSKLC-------D---------SAVRSISFCSKQ-- 60 (84)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~-------------------~~~~~d~~~~~~-------~---------~~v~~~~~~~~~-- 60 (84)
.+++++++..+..+..++ .+..+|..++.. . ....-+....++
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 467788888877776553 477788876654 0 011112222245
Q ss_pred -CEEEEecCCCcEEEEeCCCCeec
Q psy16880 61 -RTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 61 -~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
..++.++.++.+.++|..+++.+
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeEEEEECCCCEEEEEECCCCCEe
Confidence 56778888999999999988764
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.05 E-value=0.1 Score=31.18 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=32.1
Q ss_pred CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 34 DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 34 ~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.+.+..||+.+++. ...+..-.....+..++.++.|+.++.+|.++++.+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 46788888877655 111111111113456777889999999999988764
No 249
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.96 E-value=0.36 Score=25.99 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=48.9
Q ss_pred EeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880 7 TFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNL 77 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (84)
.+.+- .+.+..++|+|++..| +....++.+...|.. +.. ....-++++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~-~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGI-TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTC-CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCc-ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 45565 5789999999976655 446667777777876 333 246778888888876666555677777765
Q ss_pred C
Q psy16880 78 N 78 (84)
Q Consensus 78 ~ 78 (84)
.
T Consensus 99 ~ 99 (255)
T 3qqz_A 99 T 99 (255)
T ss_dssp C
T ss_pred C
Confidence 4
No 250
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.73 E-value=0.57 Score=27.51 Aligned_cols=61 Identities=18% Similarity=0.352 Sum_probs=43.7
Q ss_pred CcCEEEEEEccC---CCEEEEeCCCCcEEEEeCCCCCC-----------------CCCEEEEEEccCCCEEEE--ecCCC
Q psy16880 13 NSAVRSISFCSK---QHTLISGGDDGSICMWNLNSKLC-----------------DSAVRSISFCSKQRTLIS--GGDDG 70 (84)
Q Consensus 13 ~~~v~~~~~~~~---~~~l~~~~~~~~~~~~d~~~~~~-----------------~~~v~~~~~~~~~~~~~~--~~~~~ 70 (84)
..+|..+.|+|- +..|+.=..|+.+++||+..... ...+..++|.+++-.+.. ....|
T Consensus 124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~G 203 (452)
T 3pbp_A 124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGG 203 (452)
T ss_dssp CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSC
T ss_pred CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCC
Confidence 467999999994 46898889999999999975211 256788888876654444 33555
Q ss_pred cEE
Q psy16880 71 SIC 73 (84)
Q Consensus 71 ~i~ 73 (84)
-|.
T Consensus 204 DIY 206 (452)
T 3pbp_A 204 DIF 206 (452)
T ss_dssp EEE
T ss_pred CEE
Confidence 554
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.67 E-value=0.15 Score=30.93 Aligned_cols=49 Identities=8% Similarity=0.209 Sum_probs=34.1
Q ss_pred CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 35 GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 35 ~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
+.+..||..+++. ............+..++.++.++.++.||.++++.+
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 6788899887765 222222233335667888888999999999988754
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=93.66 E-value=0.41 Score=25.66 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=47.6
Q ss_pred eEEEeccCCCcCEEEEEEccCCCEEEEeCCC--CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE-ecCCCcEEE
Q psy16880 4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDD--GSICMWNLNSKLC------DSAVRSISFCSKQRTLIS-GGDDGSICM 74 (84)
Q Consensus 4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~-~~~~~~i~~ 74 (84)
.++++..........+.|+. +.++.+.+.. ..++.+|..++.. ..........+.+..+.. .-.++.+.+
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 45555221023456788875 5666666665 4899999988766 333333333333444443 345788999
Q ss_pred EeCCCCeec
Q psy16880 75 WNLNSKLCD 83 (84)
Q Consensus 75 ~~~~~~~~~ 83 (84)
+|..+.+.+
T Consensus 90 ~D~~tl~~~ 98 (243)
T 3mbr_X 90 YDLATLTPR 98 (243)
T ss_dssp EETTTTEEE
T ss_pred EECCcCcEE
Confidence 999887754
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=93.43 E-value=0.49 Score=25.82 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=41.9
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEE--EEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRS--ISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
...+.|+ ++.++.+.+.++.++.+|+.+++. ...... +.+..+ +.....-.++.+.++|..+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEE
Confidence 4567776 466777888888899999987766 222222 333322 33333345778889998887654
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.23 E-value=0.82 Score=27.83 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=32.9
Q ss_pred cEEEEeCCC--CCC-------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCCC
Q psy16880 36 SICMWNLNS--KLC-------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNSK 80 (84)
Q Consensus 36 ~~~~~d~~~--~~~-------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~ 80 (84)
.+.+.|..+ ... .....++.++|++++++..+ .++.+.++|+.+.
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 477778775 211 45678899999999776554 5788999998754
No 255
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=92.88 E-value=0.64 Score=25.65 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCCcEEEEeCCCCCC------CCCEE-EEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 24 KQHTLISGGDDGSICMWNLNSKLC------DSAVR-SISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 24 ~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
.+..+..++.++.+..+|..++.. ...+. ..... +..++.++.++.+..+|..+++.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV 165 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE
Confidence 455667777888899999876654 11111 11111 23566777788899999887764
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=92.73 E-value=0.65 Score=25.34 Aligned_cols=60 Identities=2% Similarity=-0.086 Sum_probs=40.1
Q ss_pred cCCCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 23 SKQHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
+++..|+.......+.++|..+... -..+..+.|. ++...+..-.++.|.+-|+.+++.+
T Consensus 143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence 3566666666688888888876554 1134455655 5655555556788888898888754
No 257
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=92.48 E-value=0.81 Score=25.81 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=45.8
Q ss_pred CEEEEEEccCCCEEEEeCCC-CcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880 15 AVRSISFCSKQHTLISGGDD-GSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~-~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (84)
....|+..++|+..++++.. +.|...+...... .....++.++|++..++.....+.+..+|+..
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 36788899999988877666 5544444332211 22367999999998888776688999988763
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.32 E-value=1.1 Score=27.06 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=42.7
Q ss_pred EEEccCCCEEEEeCC-CCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEec-CC-----CcEEEEeCCCCee
Q psy16880 19 ISFCSKQHTLISGGD-DGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGG-DD-----GSICMWNLNSKLC 82 (84)
Q Consensus 19 ~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~-~~-----~~i~~~~~~~~~~ 82 (84)
.++..++..++.|+. ...+.+||..+..- ...-......+++++++.|+ .+ ..+.+||+.+...
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 456678899998884 45788898764322 11223455567888888887 33 4688999877653
No 259
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=92.31 E-value=0.46 Score=29.58 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=24.9
Q ss_pred EEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 51 VRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 51 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
|.++.+ +...+++.+.|+++++|++++++++
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv 254 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLI 254 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceE
Confidence 555444 4668899999999999999998865
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.96 E-value=0.61 Score=28.20 Aligned_cols=50 Identities=16% Similarity=0.035 Sum_probs=31.3
Q ss_pred CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 34 DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 34 ~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.+.+..||+.+++. ......-.....+..++.++.|+.++.+|.++++.+
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 45777788877655 111111111223456677888999999999988864
No 261
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.77 E-value=0.84 Score=24.47 Aligned_cols=62 Identities=5% Similarity=-0.090 Sum_probs=41.0
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCE--------EEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAV--------RSISFCSKQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (84)
..+..++|+|++.+.+. .++.+.-.+..+... ...| ..+.|.|++.+.++ .|+.|.-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 45679999998887666 566655445432111 2233 67888999986666 568888777643
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=90.87 E-value=1.1 Score=24.24 Aligned_cols=65 Identities=6% Similarity=0.023 Sum_probs=43.3
Q ss_pred CEEEEEEcc-CCCEEEEeCC-----------------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEe-cCC
Q psy16880 15 AVRSISFCS-KQHTLISGGD-----------------DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISG-GDD 69 (84)
Q Consensus 15 ~v~~~~~~~-~~~~l~~~~~-----------------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~-~~~ 69 (84)
....+++.+ ++..+++-.. .+.+..+|...... -.....++++|++..+..+ ...
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~ 206 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS 206 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC
Confidence 356788999 8887776432 25677777654332 2345678999998755444 556
Q ss_pred CcEEEEeCCC
Q psy16880 70 GSICMWNLNS 79 (84)
Q Consensus 70 ~~i~~~~~~~ 79 (84)
+.|.++++..
T Consensus 207 ~~I~~~~~~~ 216 (322)
T 2fp8_A 207 HQIVKYWLEG 216 (322)
T ss_dssp TEEEEEESSS
T ss_pred CeEEEEECCC
Confidence 7898888764
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.72 E-value=2.2 Score=27.37 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=28.6
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC 47 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~ 47 (84)
..+.++...++..++++-+.|+.+++|++.++..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 3567788888888999999999999999887654
No 264
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=90.34 E-value=1.1 Score=23.46 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=44.1
Q ss_pred EEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCCC
Q psy16880 16 VRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNS 79 (84)
Q Consensus 16 v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~ 79 (84)
...+++++++ ..+++-...+.+..++...... -....++++.+.+..+ ++-...+.|.++++..
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g 110 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence 4688899855 4555666677899998875433 2467899999865444 4444567888887753
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=89.60 E-value=2.3 Score=25.95 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=42.9
Q ss_pred EEEEccCCCEEEEeCCCC-------------------cEEEEeCCCCCC------C----------CCEEEEEEccCCC-
Q psy16880 18 SISFCSKQHTLISGGDDG-------------------SICMWNLNSKLC------D----------SAVRSISFCSKQR- 61 (84)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~-------------------~~~~~d~~~~~~------~----------~~v~~~~~~~~~~- 61 (84)
.+++.+....+..+..++ .+..+|..++.. . .......+..+++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 457777777777776655 377788877655 0 1222222222443
Q ss_pred --EEEEecCCCcEEEEeCCCCeec
Q psy16880 62 --TLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 62 --~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.++.++.++.+.++|..+++.+
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEEEECCCCEEEEEECCCCCEe
Confidence 5778888999999999988764
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=88.79 E-value=1.8 Score=23.47 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=43.0
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------------------CCCEEEEEEcc-CCCEEEEec
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------------------DSAVRSISFCS-KQRTLISGG 67 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------------------~~~v~~~~~~~-~~~~~~~~~ 67 (84)
....++|.+++..+.++..++.+..||...... ...+.++++.+ ++. +..+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 345788899888677777888888888764321 12477888887 565 44443
Q ss_pred CCCcEEEEeCCCC
Q psy16880 68 DDGSICMWNLNSK 80 (84)
Q Consensus 68 ~~~~i~~~~~~~~ 80 (84)
..+.+..++..++
T Consensus 99 ~~~~i~~~d~~~g 111 (322)
T 2fp8_A 99 CYYHLSVVGSEGG 111 (322)
T ss_dssp TTTEEEEECTTCE
T ss_pred CCCCEEEEeCCCC
Confidence 3444777776644
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=88.44 E-value=2.4 Score=24.49 Aligned_cols=62 Identities=8% Similarity=0.014 Sum_probs=41.2
Q ss_pred EEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCC
Q psy16880 17 RSISFCS-KQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLN 78 (84)
Q Consensus 17 ~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 78 (84)
..++++| ++.++++-..++.+..+|...... ......++++|++..+ ++-...+.|..+++.
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 4567788 677776766777888888763321 1223469999999844 444556788887754
No 268
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=88.36 E-value=1.8 Score=23.12 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=26.6
Q ss_pred EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
+.++...+++. +..+..++.+..+|.. +.. ...+..+...+++...+ ++ +.+..+|
T Consensus 139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d 201 (330)
T 3hxj_A 139 YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN 201 (330)
T ss_dssp CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC
T ss_pred eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC
Confidence 33444444454 3345555666666665 322 22344444444554333 22 5566666
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=87.97 E-value=2 Score=23.14 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=47.1
Q ss_pred CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------CCCEEEEEEccCCCEEEE
Q psy16880 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------------DSAVRSISFCSKQRTLIS 65 (84)
Q Consensus 2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------------~~~v~~~~~~~~~~~~~~ 65 (84)
|+.++.+.-........+++.+++.++++.-.+..+.++++..... +...-+++|.|.+..+.+
T Consensus 58 g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v 137 (255)
T 3qqz_A 58 GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF 137 (255)
T ss_dssp CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE
T ss_pred CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE
Confidence 4555555321135667888888887766655566777776643321 334589999998876766
Q ss_pred ecCCCcEEEEeC
Q psy16880 66 GGDDGSICMWNL 77 (84)
Q Consensus 66 ~~~~~~i~~~~~ 77 (84)
+.......+|.+
T Consensus 138 a~E~~p~~i~~~ 149 (255)
T 3qqz_A 138 FKEKNPIEVYKV 149 (255)
T ss_dssp EEESSSEEEEEE
T ss_pred EECcCCceEEEE
Confidence 665555555544
No 270
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=87.57 E-value=2.1 Score=22.89 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=25.9
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
.+.++...+++..++.. +.+..+| .+... ...+.++...+++. +..++.++.+..++
T Consensus 178 ~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 178 ITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN 241 (330)
T ss_dssp CCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred ceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC
Confidence 34444444555544433 4555566 32222 23345555555544 33333444455554
No 271
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=86.00 E-value=2.5 Score=22.17 Aligned_cols=68 Identities=6% Similarity=-0.106 Sum_probs=42.5
Q ss_pred cCEEEEEEccCCCE-EEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 14 SAVRSISFCSKQHT-LISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 14 ~~v~~~~~~~~~~~-l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
.....+++++++.. +++-...+.+..+|...... .....+++.. .+...++....+.|..++..+++.
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc
Confidence 34567889987654 45556667888888864322 2344566553 333344444567898998887664
No 272
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=82.39 E-value=4.5 Score=22.30 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=36.7
Q ss_pred CCEEEEeCCCCcEEEEeCCCCCC------C---------C-CEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880 25 QHTLISGGDDGSICMWNLNSKLC------D---------S-AVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82 (84)
Q Consensus 25 ~~~l~~~~~~~~~~~~d~~~~~~------~---------~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (84)
+..+..+..++.+..+|..++.. . . .+.... ...+..+..++.++.+..+|..+++.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCE
Confidence 45666777788888899876655 1 1 121111 12344577777788999999887764
No 273
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=80.44 E-value=6 Score=22.43 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=45.2
Q ss_pred EEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----C---------CCEEEEEE---ccCCCEEEEec----------
Q psy16880 16 VRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----D---------SAVRSISF---CSKQRTLISGG---------- 67 (84)
Q Consensus 16 v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----~---------~~v~~~~~---~~~~~~~~~~~---------- 67 (84)
-.+.+|++. +.++++....+.|..||...... . ..+.++.+ .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 457789874 45555556789999998864322 1 14689999 58877666533
Q ss_pred ---CCCcEEEEeCC---CCee
Q psy16880 68 ---DDGSICMWNLN---SKLC 82 (84)
Q Consensus 68 ---~~~~i~~~~~~---~~~~ 82 (84)
.++.+..+|+. +++.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~ 115 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKP 115 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCC
T ss_pred ccCCCCEEEEEcCCcCCCCCE
Confidence 25678899988 5553
No 274
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=80.32 E-value=6.1 Score=22.44 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=44.6
Q ss_pred EeccCCCcCEEEEEEccCCCEEEEeCC---------------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE
Q psy16880 7 TFVHSNNSAVRSISFCSKQHTLISGGD---------------DGSICMWNLNSKLC------DSAVRSISFCSKQRTLIS 65 (84)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~ 65 (84)
.+++........+.+.++++++++... ...-.+|.+..... -....+++|+|+++.+..
T Consensus 158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEE
Confidence 344331345688888888887776541 11223443333322 245788999999977665
Q ss_pred e-cCCCcEEEEeCC
Q psy16880 66 G-GDDGSICMWNLN 78 (84)
Q Consensus 66 ~-~~~~~i~~~~~~ 78 (84)
+ +..+.|..|++.
T Consensus 238 adt~~~~I~~~~~~ 251 (355)
T 3sre_A 238 AELLAHKIHVYEKH 251 (355)
T ss_dssp EEGGGTEEEEEEEC
T ss_pred EeCCCCeEEEEEEC
Confidence 5 456789988875
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=80.04 E-value=6.6 Score=22.64 Aligned_cols=69 Identities=12% Similarity=0.201 Sum_probs=40.8
Q ss_pred CcCEEEEEEccCCCEEEEeCC-CC----cEEEEeCCCCCC-------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGD-DG----SICMWNLNSKLC-------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~-~~----~~~~~d~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 79 (84)
......+++++++..+..+.. .+ .+...+...... -.....+++.| ++.++++-...+.|..++...
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 345678999999985544433 22 222233221111 23456788888 677666665677888888765
Q ss_pred Ce
Q psy16880 80 KL 81 (84)
Q Consensus 80 ~~ 81 (84)
+.
T Consensus 258 ~~ 259 (430)
T 3tc9_A 258 QE 259 (430)
T ss_dssp TE
T ss_pred Cc
Confidence 54
No 276
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=77.87 E-value=9.7 Score=23.38 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=31.0
Q ss_pred EEEEEccCCCEEEEeCCC------------CcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEE
Q psy16880 17 RSISFCSKQHTLISGGDD------------GSICMWNLNSKLC--------DSAVRSISFCSKQRTLIS 65 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~------------~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~ 65 (84)
--|.|++.|.++++-..+ ..+.+.+...+.. ..+++.++|+|+++.+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 446788888877765432 1233333333332 678999999999876654
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=77.71 E-value=6.6 Score=23.61 Aligned_cols=24 Identities=13% Similarity=-0.062 Sum_probs=19.3
Q ss_pred CCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880 24 KQHTLISGGDDGSICMWNLNSKLC 47 (84)
Q Consensus 24 ~~~~l~~~~~~~~~~~~d~~~~~~ 47 (84)
.+..++.++.++.+..+|..+++.
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCE
Confidence 356677788999999999987765
No 278
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=77.36 E-value=11 Score=23.53 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=45.3
Q ss_pred EEEEEccCCCEEE-EeCCCCcEEEEeCCCC---------CC----------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 17 RSISFCSKQHTLI-SGGDDGSICMWNLNSK---------LC----------DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 17 ~~~~~~~~~~~l~-~~~~~~~~~~~d~~~~---------~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
..+..+|+|++++ ++-.+..+.++|.... .. .-...+.+|.+++.-..+--.|..+.-|+
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 4678899998765 5566779999998731 00 45678999999984444445688999998
Q ss_pred CC
Q psy16880 77 LN 78 (84)
Q Consensus 77 ~~ 78 (84)
+.
T Consensus 406 i~ 407 (638)
T 3sbq_A 406 ME 407 (638)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 279
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=77.32 E-value=6.5 Score=23.73 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.8
Q ss_pred CCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880 24 KQHTLISGGDDGSICMWNLNSKLC 47 (84)
Q Consensus 24 ~~~~l~~~~~~~~~~~~d~~~~~~ 47 (84)
.+.+++.++.++.++.+|..+++.
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCCEEEEECCCCcEEEEECCCCCE
Confidence 356777789999999999988766
No 280
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=76.53 E-value=7.9 Score=21.63 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=30.9
Q ss_pred cCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCC---------C----CCCEEEEEEccC
Q psy16880 14 SAVRSISFCSKQH-TLISGGDDGSICMWNLNSKL---------C----DSAVRSISFCSK 59 (84)
Q Consensus 14 ~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~---------~----~~~v~~~~~~~~ 59 (84)
.....|+|.|+++ ++++- ..+.|.+++..... . ......++++|+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e-~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITL-RGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SSEEEEEECSTTCCEEEEE-TTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CCcEEEEEcCCCCEEEEEe-CCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 4457999999999 66655 46888887743211 0 345688999985
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.43 E-value=2.4 Score=27.66 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=26.7
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC 47 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~ 47 (84)
.+.++...++..++++-+.|+.+++|++.++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCe
Confidence 445666677888999999999999999987754
No 282
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=75.29 E-value=9 Score=21.71 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=34.7
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------CCCEEEEEEccC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------DSAVRSISFCSK 59 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~ 59 (84)
...-..|+|.|++.++++-...+.|..++...... ......++++|+
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 44567999999999888877688888876543221 346788999985
No 283
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=75.12 E-value=10 Score=22.19 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=31.9
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSK 59 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~ 59 (84)
......|+|.|+++++++-...+.|..++...... +.....++|+|+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 34557999999999888876655677665432211 234568999994
No 284
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=73.69 E-value=9.7 Score=21.33 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=31.4
Q ss_pred CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC------C----CCCEEEEEEccC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL------C----DSAVRSISFCSK 59 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~------~----~~~v~~~~~~~~ 59 (84)
......|+|.|+++++++-. .+.|.++|..... . ......++++|+
T Consensus 28 l~~P~~ia~~pdG~l~V~e~-~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTER-PGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPE 83 (354)
T ss_dssp CSCEEEEEEEETTEEEEEET-TTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred CCCCeEEEEcCCCeEEEEeC-CCEEEEEeCCCceEeeccceeecCCCceeeEEeCCC
Confidence 34457899999998766654 4788777643210 0 356889999997
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=72.75 E-value=11 Score=21.59 Aligned_cols=74 Identities=11% Similarity=0.234 Sum_probs=49.4
Q ss_pred ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC-----C---------CCCEEEEEE--ccCCC-EEEE
Q psy16880 3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL-----C---------DSAVRSISF--CSKQR-TLIS 65 (84)
Q Consensus 3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~-----~---------~~~v~~~~~--~~~~~-~~~~ 65 (84)
+.++++.. .+.+..+...+....|..+-.+.-+..++..... . ...+.++++ .++++ +++.
T Consensus 171 ~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv 248 (355)
T 3amr_A 171 KKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA 248 (355)
T ss_dssp EEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred eEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence 45667665 4677888888887888888777656555644221 1 346788887 44444 5555
Q ss_pred ec-CCCcEEEEeCC
Q psy16880 66 GG-DDGSICMWNLN 78 (84)
Q Consensus 66 ~~-~~~~i~~~~~~ 78 (84)
++ .++.+.+||..
T Consensus 249 SsQG~~s~~Vydr~ 262 (355)
T 3amr_A 249 SSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEGGGTEEEEEESS
T ss_pred EcCCCCEEEEEECC
Confidence 55 46789999986
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=71.81 E-value=14 Score=22.20 Aligned_cols=61 Identities=7% Similarity=-0.035 Sum_probs=41.2
Q ss_pred EEEEEcc-CCCEEEEeCCCCcEEEEeCC-------CCCC--------------------CCCEEEEEEccCCCEE-EEec
Q psy16880 17 RSISFCS-KQHTLISGGDDGSICMWNLN-------SKLC--------------------DSAVRSISFCSKQRTL-ISGG 67 (84)
Q Consensus 17 ~~~~~~~-~~~~l~~~~~~~~~~~~d~~-------~~~~--------------------~~~v~~~~~~~~~~~~-~~~~ 67 (84)
..++.+| ++.++++-...+.+..+|.. ++.. ....+.++|+|++..+ ++-.
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~ 329 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI 329 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC
Confidence 4667788 56667777788889888876 2210 2345789999999854 4444
Q ss_pred CCCcEEEEeC
Q psy16880 68 DDGSICMWNL 77 (84)
Q Consensus 68 ~~~~i~~~~~ 77 (84)
..+.|+.++.
T Consensus 330 ~~h~I~kid~ 339 (496)
T 3kya_A 330 NNHYFMRSDY 339 (496)
T ss_dssp TTTEEEEEEE
T ss_pred CCCEEEEEec
Confidence 5667877543
No 287
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=67.73 E-value=14 Score=20.64 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=39.7
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC-------C----CCCEEEEEEccC---CCEEEEecC-C-----CcEE
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKL-------C----DSAVRSISFCSK---QRTLISGGD-D-----GSIC 73 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~-------~----~~~v~~~~~~~~---~~~~~~~~~-~-----~~i~ 73 (84)
..-..|+|.|+++++++-. .+.|..++ .... . ......++++|+ +..+..... . +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~-~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAER-PGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEET-TTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeC-CCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 3457899999999776654 47888776 2110 1 356889999997 444443322 1 4566
Q ss_pred EEeCC
Q psy16880 74 MWNLN 78 (84)
Q Consensus 74 ~~~~~ 78 (84)
.++..
T Consensus 109 r~~~~ 113 (352)
T 2ism_A 109 RLRHL 113 (352)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 66654
No 288
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=63.18 E-value=31 Score=23.12 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=36.6
Q ss_pred EEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccC------CCEEEEecC-CCcEEEEeCCCCe
Q psy16880 27 TLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSK------QRTLISGGD-DGSICMWNLNSKL 81 (84)
Q Consensus 27 ~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~------~~~~~~~~~-~~~i~~~~~~~~~ 81 (84)
.++.+. .+.+..+++..... ...|.|+++.|. +..++.+.+ |++++++.+.+.+
T Consensus 525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 344443 45666666643322 678999998753 368888886 8999999987644
No 289
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=60.37 E-value=21 Score=20.26 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=23.7
Q ss_pred CCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
.....++|.|++.++++--..+.|.+++..++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 45688999999987666644788888876543
No 290
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.71 E-value=21 Score=22.70 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=24.1
Q ss_pred CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC 47 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~ 47 (84)
.|.++.+ +..++++-+.|..+++|++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCce
Confidence 3544443 577999999999999999987764
No 291
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=57.15 E-value=33 Score=21.43 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=42.5
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
..|.++...+++..+..|..++-+..+|..+... ...|.++...+++.+.+.. . +-+..|+..+++
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS 482 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence 4688888888888455555555577777654322 3468888887777754443 3 347778776543
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=54.79 E-value=36 Score=21.22 Aligned_cols=65 Identities=11% Similarity=-0.067 Sum_probs=38.0
Q ss_pred EEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 16 VRSISFCSK-QHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 16 v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
...|+++|+ +.++++-.....|..+++..... -....++++..+ .++.+....+.|..++..+++
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 356888885 45666666677888888864322 122334554433 333444445678888765544
No 293
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=53.64 E-value=27 Score=19.43 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=40.8
Q ss_pred cCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCC-CEEEEecCCCcEEEEeCCC
Q psy16880 14 SAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQ-RTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 14 ~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 79 (84)
.....++|++.. .++.+-...+.+..++...... -....++++.+.+ .+..+-...+.|.+.++..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 345788998754 4555556677888888765433 1345678887644 3444444556777777653
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=53.36 E-value=31 Score=20.02 Aligned_cols=59 Identities=12% Similarity=0.199 Sum_probs=36.0
Q ss_pred EEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 17 RSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
.+|..++.-..+..-..-|.+.+||+.++.. ...|..-+......-++.....|.+..-
T Consensus 263 Vamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 263 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred EEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 4667777667777778889999999988655 3333333333333344444455554433
No 295
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=53.08 E-value=37 Score=20.83 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=18.0
Q ss_pred CEEEEecCCCcEEEEeCCCCeec
Q psy16880 61 RTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
+.++.++.++.+.+.|..+++.+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEECCCcEEEEEECCCCCEe
Confidence 35666778999999999888754
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=51.55 E-value=33 Score=19.88 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=26.3
Q ss_pred EEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 51 VRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 51 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
.-++..++....+.....-|.+++||+.++.++
T Consensus 262 PVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 445666666667888888899999999998875
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=50.15 E-value=44 Score=20.85 Aligned_cols=64 Identities=14% Similarity=-0.055 Sum_probs=35.9
Q ss_pred EEEEEEccCCC-EEEEeCC-CCcEEEEeCCCCCC-------CCCEEEEEEccCCC-EEEEecCCCcEEEEeCCC
Q psy16880 16 VRSISFCSKQH-TLISGGD-DGSICMWNLNSKLC-------DSAVRSISFCSKQR-TLISGGDDGSICMWNLNS 79 (84)
Q Consensus 16 v~~~~~~~~~~-~l~~~~~-~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 79 (84)
...+++.|.+. ++.+-.. .+.|..+++..... -....++++.|.+. +.++-...+.|..+++..
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 35667777443 3433322 25666666543222 22456799998654 444444567788887753
No 298
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=49.83 E-value=44 Score=20.80 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=40.0
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
..|.++...+++...+.....| +..+|...... ...|.++...+++.+.+.. ..|.+..||..++
T Consensus 495 ~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 495 NFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF 569 (781)
T ss_dssp SCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred ceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence 4678888888887766544345 44566543321 3568888888877755443 3554466766544
No 299
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=49.73 E-value=15 Score=19.08 Aligned_cols=20 Identities=5% Similarity=0.116 Sum_probs=14.0
Q ss_pred EEEEecCCCcEEEEeCCCCe
Q psy16880 62 TLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 62 ~~~~~~~~~~i~~~~~~~~~ 81 (84)
-+++.+.++++.+||++-++
T Consensus 133 aia~S~~g~~~tlFDPN~GE 152 (188)
T 1ukf_A 133 AIACSCEGSQFKLFDPNLGE 152 (188)
T ss_dssp EEEEEEETTEEEEEETTTEE
T ss_pred eEEeccCCCeEEEeCCCCce
Confidence 34445567889999988664
No 300
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=49.66 E-value=29 Score=18.63 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=36.6
Q ss_pred cCEEEEEEccCCCEEEEeCCC--CcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880 14 SAVRSISFCSKQHTLISGGDD--GSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~--~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (84)
.....+++.++++++++.... ..+..+|...... ......++..+.+..+++-..++.|..+|..+
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 346788899998876655332 2355556544332 11233444444443344444577788888764
No 301
>4b4p_A FEDF, F18 fimbrial adhesin AC; cell adhesion, fimbriae, bacterial adhesins, protein-carbohy interactions, ABH blood group binding, STEC; 1.80A {Escherichia coli k-12} PDB: 4b4q_A* 4b4r_A*
Probab=46.30 E-value=23 Score=16.52 Aligned_cols=28 Identities=14% Similarity=0.487 Sum_probs=20.5
Q ss_pred CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880 48 DSAVRSISFCSKQRTLISGGDDGSICMWN 76 (84)
Q Consensus 48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (84)
...|+.+.|.|...-.+++ ..++|.+|.
T Consensus 31 qhqiynvnfipsssgtltc-qagtilvwk 58 (151)
T 4b4p_A 31 QHQIYNVNFIPSSSGTLTC-QAGTILVWK 58 (151)
T ss_dssp EEEEEEEEECCSSCEEEEE-EECEEEEEE
T ss_pred heeeeeeeeeecCCCcEEE-ccceEEEEe
Confidence 4578888998877655554 467899985
No 302
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=45.26 E-value=44 Score=19.39 Aligned_cols=68 Identities=6% Similarity=0.155 Sum_probs=37.6
Q ss_pred CcCEEEEEEccCCCEEEEeCCC---Cc-EEEEeCCCCCC-------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCCC
Q psy16880 13 NSAVRSISFCSKQHTLISGGDD---GS-ICMWNLNSKLC-------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 13 ~~~v~~~~~~~~~~~l~~~~~~---~~-~~~~d~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
......+++++++.++++-... .. +...+...... -.....+++.| ++.+.++-..++.|..++..++
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 4456789999999855554321 11 22222211110 23345677787 6665555555667888877644
No 303
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=43.03 E-value=46 Score=19.00 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=40.5
Q ss_pred CcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCC----C-------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCC
Q psy16880 13 NSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKL----C-------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 13 ~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~----~-------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 79 (84)
...+..|+|++.. ..+.+-...+.|..+++.... . -....++++.+ .+.+..+-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 3456789999854 455555666778778876421 1 23567788876 344444444566777777654
Q ss_pred C
Q psy16880 80 K 80 (84)
Q Consensus 80 ~ 80 (84)
.
T Consensus 191 ~ 191 (400)
T 3p5b_L 191 V 191 (400)
T ss_dssp C
T ss_pred C
Confidence 3
No 304
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=42.37 E-value=52 Score=19.48 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=30.1
Q ss_pred cCEEEEEEccCCC--EEEEeCCCCcEEEEeCCCCC---C----------------CCCEEEEEEccC
Q psy16880 14 SAVRSISFCSKQH--TLISGGDDGSICMWNLNSKL---C----------------DSAVRSISFCSK 59 (84)
Q Consensus 14 ~~v~~~~~~~~~~--~l~~~~~~~~~~~~d~~~~~---~----------------~~~v~~~~~~~~ 59 (84)
..-..|+|.|++. +|++ ...+.|.+++..... . +.....++++|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3447999999985 5554 567888888653221 1 135778999985
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=40.61 E-value=42 Score=17.83 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCEEEEeCCC-----CcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCC-----CcEEEEeCCCCee
Q psy16880 24 KQHTLISGGDD-----GSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDD-----GSICMWNLNSKLC 82 (84)
Q Consensus 24 ~~~~l~~~~~~-----~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~ 82 (84)
++..++.|+.+ ..+.+||..+..- ......+.+ ++++++.++.+ ..+.+||+.+.+.
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 55666777653 4577788765422 111222222 45566666654 3577888876653
No 306
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.40 E-value=66 Score=20.09 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=31.4
Q ss_pred CEEEEEEccCCCEEEEeCCC------------CcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEe
Q psy16880 15 AVRSISFCSKQHTLISGGDD------------GSICMWNLNSKLC--------DSAVRSISFCSKQRTLISG 66 (84)
Q Consensus 15 ~v~~~~~~~~~~~l~~~~~~------------~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~ 66 (84)
....|.|.++|.+.++-... ..+..++..++.. ...++.++|+|+++.+...
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34567888888877733211 1333334333333 3568999999999876543
No 307
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=38.79 E-value=71 Score=19.96 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=40.7
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
..|.++...+++...++.. .|.+..||..+... ...|.++...+++.+.++. ..| +..+++.+.
T Consensus 539 ~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKK 612 (781)
T ss_dssp SCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTT
T ss_pred CeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCC
Confidence 4578888888887666544 66547777654432 3467788888777755543 344 666666544
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=38.41 E-value=67 Score=19.58 Aligned_cols=59 Identities=12% Similarity=0.199 Sum_probs=36.6
Q ss_pred EEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880 17 RSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW 75 (84)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 75 (84)
.+|..++.-..+..-...|.+.+||+.++.. ...|..-+......-++.....|.+.--
T Consensus 262 vamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred eEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEE
Confidence 4677777777777788899999999988655 3333333333333344444455554433
No 309
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=36.60 E-value=59 Score=18.40 Aligned_cols=64 Identities=11% Similarity=-0.090 Sum_probs=38.7
Q ss_pred CEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880 15 AVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS 79 (84)
Q Consensus 15 ~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (84)
....|+++|++. ++.+-...+.|..+|+..... .....++++ ..+....+-...+.|..++..+
T Consensus 247 ~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 247 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp CEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC
Confidence 356788987554 455556667888888764332 235667777 3344444544566777776433
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=36.33 E-value=50 Score=17.54 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCCEEEEeCCC-----CcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCC-----CcEEEEeCCCCee
Q psy16880 24 KQHTLISGGDD-----GSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDD-----GSICMWNLNSKLC 82 (84)
Q Consensus 24 ~~~~l~~~~~~-----~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~ 82 (84)
++..++.|+.+ ..+.+||..+..- +.....+. -++.+++.++.+ ..+.+||+.+.+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 56667777653 3577788764422 11112222 255666666654 3488898876653
No 311
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=31.65 E-value=12 Score=22.40 Aligned_cols=15 Identities=27% Similarity=0.796 Sum_probs=7.5
Q ss_pred cCCCcEEEEeCCCCe
Q psy16880 67 GDDGSICMWNLNSKL 81 (84)
Q Consensus 67 ~~~~~i~~~~~~~~~ 81 (84)
..+|.+++||+++..
T Consensus 164 ~~~GVVrvWDVkd~s 178 (577)
T 3mwp_A 164 GRDGVVRVWDVKNAE 178 (577)
T ss_dssp --CCEECSEECSCGG
T ss_pred CCCCeEEEEecCCHH
Confidence 345666666665443
No 312
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=25.93 E-value=87 Score=17.04 Aligned_cols=66 Identities=12% Similarity=-0.044 Sum_probs=40.2
Q ss_pred cCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880 14 SAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (84)
.....+++++++..+ .+-.....|..+|+..... -....++++. .+....+-...+.|..++..++
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 345688899865544 4555667888888864322 1345677764 3444445445667777776544
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=25.24 E-value=85 Score=16.69 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCCEEEEeCCC----CcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCC------CcEEEEeCCCCee
Q psy16880 24 KQHTLISGGDD----GSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDD------GSICMWNLNSKLC 82 (84)
Q Consensus 24 ~~~~l~~~~~~----~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~ 82 (84)
++..++.|+.+ ..+..||..+..- +.....+.+ ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 55666777644 4566777765422 112222222 45566666644 4578888876653
No 314
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=24.90 E-value=1.3e+02 Score=18.84 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=40.7
Q ss_pred cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
..|.++...+++...++... | +..||..+... ...|.++...+++.+.++. .+-+..|++.+.+
T Consensus 543 ~~i~~i~~d~~g~lWigT~~-G-l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 543 LFTNCIYEASNGIIWVGTRE-G-FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp SCEEEEEECTTSCEEEEESS-C-EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTE
T ss_pred CeeEEEEECCCCCEEEEeCC-C-ceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCc
Confidence 46888888888887665543 4 55677654322 3468888888888755544 2346667766543
No 315
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=23.60 E-value=1.5e+02 Score=19.09 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=41.0
Q ss_pred cCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecC--CCcEEEEeCCC
Q psy16880 14 SAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD--DGSICMWNLNS 79 (84)
Q Consensus 14 ~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~--~~~i~~~~~~~ 79 (84)
.....|++.+.+ .++++-...+.|.+.++..... -....++++.|....++.... .+.|...++..
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 334577777755 4556666777888888865433 235788999886544544432 25566666543
No 316
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=23.38 E-value=2.2e+02 Score=20.68 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=22.7
Q ss_pred EEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880 18 SISFCSKQHTLISGGDDGSICMWNLNSKLC 47 (84)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~ 47 (84)
+|..++.-..+..-...|.+.++|+.++..
T Consensus 263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred EEEeccccCEEEEEecCceEEEEecccchh
Confidence 566666666666777888999999988765
No 317
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=20.44 E-value=1.6e+02 Score=21.20 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=24.4
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880 52 RSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83 (84)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (84)
-.+..++....+...+.-|.++++|+.++.++
T Consensus 262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred eEEEeccccCEEEEEecCceEEEEecccchhh
Confidence 45556666667777888899999999988765
No 318
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=20.27 E-value=1.2e+02 Score=16.66 Aligned_cols=66 Identities=9% Similarity=-0.063 Sum_probs=38.4
Q ss_pred CEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880 15 AVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL 81 (84)
Q Consensus 15 ~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (84)
.-..+++++++. ++.+=.....|..+|+..... -....++++.. +..+.+-...+.|..++..+++
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 346788988555 445555667888888764332 23456666643 2333444445667777765443
Done!