RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16880
(84 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 48.6 bits (114), Expect = 5e-09
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS 58
+ + S+SF L++G DD + +W+ D+ V +
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 59 KQRTLISGGDDGSICMWN 76
+ +G D + +WN
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
Score = 42.4 bits (98), Expect = 1e-06
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSI---------CMWNLNSKLCDSAV 51
+G TF + S + +I F + +G DD + + + +
Sbjct: 215 EGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 52 RSISFCSKQRTLISGGDDGSICMWNLNSKLC 82
S+SF R L++G DD + +W+
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Score = 29.7 bits (65), Expect = 0.028
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNS-------KLCDSAVRSISFCSKQRTLIS 65
+ + ++ + + L+S DG + +W+ + L S V + ++ +
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 66 GGDDGSICMWNLNSKLCD 83
GG D ++NL ++ +
Sbjct: 115 GGLDNICSIYNLKTREGN 132
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 44.3 bits (103), Expect = 2e-07
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRS 53
G + T V +N VR + F S ++S DD ++ +W+ +K C + V S
Sbjct: 236 TGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294
Query: 54 ISFCSKQRTLISGGDDGSICMW 75
+ F +++G D ++ +W
Sbjct: 295 LDFHKTAPYVVTGSVDQTVKVW 316
Score = 37.8 bits (86), Expect = 4e-05
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS 58
S + + L+SG D +I MW++++ +C D+ VR + F S
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257
Query: 59 KQRTLISGGDDGSICMWNLNSKLC 82
+ ++S DD ++ +W+ +K C
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRC 281
Score = 30.5 bits (67), Expect = 0.015
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR 84
S V + F ++S +D +I +W+ + +R
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER 53
Score = 29.7 bits (65), Expect = 0.028
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC 47
S V + F ++S +D +I +W+ +
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 51
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 43.6 bits (101), Expect = 3e-07
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSK 59
+H + S V S+ F +S G D + W S+V S
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD 317
Query: 60 QRTLISGGDDGSICMWNL 77
+ +++G D ++ +
Sbjct: 318 DKYIVTGSGDKKATVYEV 335
Score = 30.5 bits (67), Expect = 0.013
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------DS 49
I+T H V +++ + + +GG G + +W+++ D+
Sbjct: 42 ARQINTLNHG--EVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 50 AVRSISFCSKQRTLISGGDDGSICMWN 76
+RS TLI GG+ ++ +W+
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWD 125
Score = 27.1 bits (58), Expect = 0.21
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 38 CMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82
L +S V S+ F + +S G D + W
Sbjct: 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299
Score = 23.2 bits (48), Expect = 5.6
Identities = 6/35 (17%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82
V +++ + R + +GG G + +W+++
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 40.2 bits (92), Expect = 6e-06
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 13/81 (16%)
Query: 10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK-------------LCDSAVRSISF 56
+ V S++ ++SG D + W+ S + + S
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 57 CSKQRTLISGGDDGSICMWNL 77
+ +G D +W
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385
Score = 37.1 bits (84), Expect = 7e-05
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 19/88 (21%)
Query: 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSK-------------------LCDSAVRSI 54
+V S+ F +++SG D S+ +WNL + V S+
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314
Query: 55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
+ ++SG D + W+ S
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNP 342
Score = 29.4 bits (64), Expect = 0.043
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 14/73 (19%)
Query: 21 FCSKQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISG 66
+ +G D ++ +W+ + +V S+ F ++++SG
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 67 GDDGSICMWNLNS 79
D S+ +WNL +
Sbjct: 273 SLDRSVKLWNLQN 285
Score = 25.9 bits (55), Expect = 0.68
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL 42
H + + S + + +G D +W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 39.8 bits (91), Expect = 7e-06
Identities = 9/82 (10%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD---SAVRSISFCSKQRT 62
+ S+ + G + +++ ++ + + + + ++T
Sbjct: 269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKT 328
Query: 63 LISGGDDGSICMWNLNSKLCDR 84
++ DDG I + L +R
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDER 350
Score = 26.0 bits (55), Expect = 0.67
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAV 51
+ + + + + T++ DDG I + L + V
Sbjct: 315 NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
Score = 23.7 bits (49), Expect = 3.7
Identities = 4/70 (5%), Positives = 13/70 (18%)
Query: 11 SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDG 70
S S D + + + G
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 298
Query: 71 SICMWNLNSK 80
+ +++ ++
Sbjct: 299 VLLKYDVKTR 308
Score = 23.3 bits (48), Expect = 6.2
Identities = 5/65 (7%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 27 TLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDG--SICMWNLNS 79
LI+ G + +++ +R + + G + +++ +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75
Query: 80 KLCDR 84
++
Sbjct: 76 GKAEK 80
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 38.3 bits (87), Expect = 2e-05
Identities = 4/71 (5%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLIS 65
+ ++ + + ++ + ++ + + V + + +++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 66 GGDDGSICMWN 76
G D + +W
Sbjct: 69 CGTDRNAYVWT 79
Score = 25.2 bits (53), Expect = 1.0
Identities = 0/35 (0%), Positives = 12/35 (34%)
Query: 50 AVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR 84
+ ++ + + ++ + ++ + +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ 43
Score = 24.0 bits (50), Expect = 3.0
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 26 HTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
G + +L+ +K + G DG + +W++ S
Sbjct: 307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
Score = 23.7 bits (49), Expect = 3.9
Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSISFCSKQRTL 63
S+ V + F + + D ++C+ + + K+ + + +L
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL 257
Query: 64 ISGGDDGSICMWNLNSK 80
++ G D ++ +S
Sbjct: 258 VAAGHDCFPVLFTYDSA 274
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 33.7 bits (75), Expect = 0.001
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFC 57
+++ +V +++ + S D +I +WN+ + + +
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290
Query: 58 SKQRTLISGGDDGSICMWNL 77
++ L+S +G I N
Sbjct: 291 WTKQALVSISANGFINFVNP 310
Score = 28.3 bits (61), Expect = 0.10
Identities = 10/75 (13%), Positives = 26/75 (34%)
Query: 10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDD 69
+ A + + G G +L + +V +++ + S D
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 259
Query: 70 GSICMWNLNSKLCDR 84
+I +WN+ + ++
Sbjct: 260 KTIKIWNVATLKVEK 274
Score = 27.9 bits (60), Expect = 0.13
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL 42
+ T + + + L+S +G I N
Sbjct: 269 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 24.5 bits (51), Expect = 1.9
Identities = 6/74 (8%), Positives = 14/74 (18%), Gaps = 8/74 (10%)
Query: 16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD 68
+ + S+ + S SG
Sbjct: 20 AVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 69 DGSICMWNLNSKLC 82
G++ +W+
Sbjct: 79 HGNVRIWDTTQTTH 92
Score = 23.3 bits (48), Expect = 5.3
Identities = 6/76 (7%), Positives = 18/76 (23%), Gaps = 1/76 (1%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQ 60
+ + ++ + SG G++ +W+ F
Sbjct: 47 SLTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 105
Query: 61 RTLISGGDDGSICMWN 76
+ + + I
Sbjct: 106 KDISWDSESKRIAAVG 121
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 32.6 bits (72), Expect = 0.003
Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFC 57
+++ + +I+ ++ G + ++NL S + S++F
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF- 332
Query: 58 SKQRTLISGGDDGSICMWNLN 78
+ + + DG + L+
Sbjct: 333 KGKTLVAAVEKDGQSFLEILD 353
Score = 26.0 bits (55), Expect = 0.60
Identities = 5/45 (11%), Positives = 16/45 (35%)
Query: 38 CMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82
++ + + +I+ ++ G + ++NL S
Sbjct: 271 NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 315
Score = 24.9 bits (52), Expect = 1.7
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 20 SFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSI 72
+ + +I+G DD I +++ +K D V ++ + + L+SG D ++
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTV 76
Query: 73 CMWNLNSKLC 82
+W++ C
Sbjct: 77 RVWDIKKGCC 86
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 32.5 bits (72), Expect = 0.003
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 10/72 (13%)
Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLI 64
+ I + L+ DGS+ ++ + + + +F I
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 65 SGGDDGSICMWN 76
G +
Sbjct: 73 YVGTVQGEILKV 84
Score = 31.7 bits (70), Expect = 0.006
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 6/81 (7%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSK 59
+ + V SI F + L + G DG I WNL ++ + +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303
Query: 60 QRTLISGGDDGSICMWNLNSK 80
L D + +
Sbjct: 304 DNILCLATSDDTFKTNAAIDQ 324
Score = 29.8 bits (65), Expect = 0.025
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82
+ I + L+ DGS+ ++ + +
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK 45
Score = 25.2 bits (53), Expect = 1.0
Identities = 15/60 (25%), Positives = 20/60 (33%)
Query: 23 SKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82
S NL V SI F + + L + G DG I WNL ++
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 426
Score = 31.5 bits (70), Expect = 0.006
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 28 LISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
++ D G I + + +SK AV + R L+ G D I M +L +
Sbjct: 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWA 92
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 31.1 bits (68), Expect = 0.010
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 21 FCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGS 71
+ L +G D S+ +WN+N + + + T++S G D +
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291
Query: 72 ICMWNL 77
I WN+
Sbjct: 292 IKFWNV 297
Score = 30.0 bits (65), Expect = 0.027
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR 84
+ A+ ++S + +TL S +G I W++++ + +R
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48
Score = 29.6 bits (64), Expect = 0.029
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC 47
GSI + +N A+ ++S + TL S +G I W++++ +
Sbjct: 2 GSIDQVR-YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 46
Score = 25.3 bits (53), Expect = 1.1
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL 42
++ + + + T++S G D +I WN+
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 30.9 bits (68), Expect = 0.010
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSIS 55
G + K I G + + ++L + D ++
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAANLDHTYYCVA 298
Query: 56 FCSKQRTLISGGDDGSICMWNLNS 79
F K L GG + ++N ++
Sbjct: 299 FDKKGDKLYLGGTFNDLAVFNPDT 322
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 30.3 bits (66), Expect = 0.016
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 21 FCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFC-SKQRTLISGGDDG 70
+ G D +I +W++ + C + + + +IS DG
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 71 SICMWNL 77
++ + L
Sbjct: 319 TLNFYEL 325
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 29.9 bits (65), Expect = 0.025
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFC 57
+ + + ++ + +G D +I ++++ + V ++ +
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW- 266
Query: 58 SKQRTLISGGDDGSICMWN 76
TL+S G D I WN
Sbjct: 267 ETPSTLVSSGADACIKRWN 285
Score = 27.2 bits (58), Expect = 0.24
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD--SAVRSISFCSKQRTLISGGDDG 70
N + +++ + LISG DG I W+ +S D + + S+ Q DD
Sbjct: 13 NKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDT 68
Query: 71 SICMWN 76
Sbjct: 69 LKVNGI 74
Score = 23.8 bits (49), Expect = 3.3
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWN 41
I ++++ V ++ + TL+S G D I WN
Sbjct: 246 RPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWN 285
Score = 23.0 bits (47), Expect = 5.9
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD 83
+ + +++ LISG DG I W+ +S D
Sbjct: 13 NKGITALTVN----PLISGSYDGRIMEWSSSSMHQD 44
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 29.4 bits (64), Expect = 0.036
Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 22/88 (25%)
Query: 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSI------------------ 54
++ + S+S C+ +S DG + +W+ ++
Sbjct: 14 DADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 55 --SFCSKQRTLISGGDDGSICMWNLNSK 80
+ + + G + + + +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITRE 99
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 28.6 bits (63), Expect = 0.066
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 28 LISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS 79
++ D G I + + ++ AV + R L G DG + M +L
Sbjct: 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92
Score = 24.4 bits (52), Expect = 2.3
Identities = 13/88 (14%), Positives = 20/88 (22%), Gaps = 15/88 (17%)
Query: 2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------DS 49
I AV + L G DG + M +L K S
Sbjct: 52 YEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 109
Query: 50 AVRSISFCSKQRTLI-SGGDDGSICMWN 76
S + + I + +
Sbjct: 110 IETSKMEGWEDKYAIAGAYWPPQYVIMD 137
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 28.2 bits (61), Expect = 0.090
Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 16/93 (17%)
Query: 5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------DSAVR 52
+ T N ++ +I+ DDG++ +W+L + V
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309
Query: 53 SISFCSKQRTLISGGDDGS----ICMWNLNSKL 81
I + + G +G+ + + + + +
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 342
Score = 26.3 bits (56), Expect = 0.46
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 20 SFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQ--------RTLISGGDDGS 71
K + L+SG D ++ +W++ + C ++ + +I+ DDG+
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281
Query: 72 ICMWNLNSKLCDR 84
+ +W+L + R
Sbjct: 282 VKLWDLKTGEFIR 294
Score = 24.4 bits (51), Expect = 2.2
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC 82
D + + FC ++SG DD ++ +W+ + C
Sbjct: 17 DHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKC 49
Score = 23.6 bits (49), Expect = 3.5
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC 47
+ ++ + + FC ++SG DD ++ +W+ + C
Sbjct: 5 ELKSPKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKC 49
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 28.3 bits (61), Expect = 0.091
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 18/72 (25%)
Query: 21 FCSKQHTLISGGDDGSICMWNLNSKLC----------------DSAVRSISFCSKQRTLI 64
++SG DG I +W+L + L V + F ++
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIV 281
Query: 65 SGGDDGSICMWN 76
S D +I +W+
Sbjct: 282 SSSHDDTILIWD 293
Score = 26.3 bits (56), Expect = 0.49
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 21 FCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMW 75
+ ++SG D +I +W++ C + ++SG DG I +W
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243
Query: 76 NLNSKLCDR 84
+L + L R
Sbjct: 244 DLVAALDPR 252
Score = 26.0 bits (55), Expect = 0.70
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC 47
+ V + + + ++SG D +I +W+ N+ C
Sbjct: 12 SETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLEC 47
Score = 25.2 bits (53), Expect = 1.1
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR 84
V + + + ++SG D +I +W+ N+ C R
Sbjct: 16 KGVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKR 49
Score = 23.3 bits (48), Expect = 4.7
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 13 NSAVRSISFCSKQHTLISGGDDGSICMWN 41
+ V + F ++S D +I +W+
Sbjct: 267 SGRVFRLQFDEF--QIVSSSHDDTILIWD 293
Score = 23.3 bits (48), Expect = 5.2
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 21 FCSKQHTLISGGDDGSICMWNLNS-----KLCDSAVRSISFCSKQRTLISGGDDGSICMW 75
++S D +I +WN ++ L + R ++SG D +I +W
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 203
Query: 76 NLNSKLC 82
++ C
Sbjct: 204 DIECGAC 210
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 28.2 bits (61), Expect = 0.10
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSI 54
G + V + S + + G + ++L + S+
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNASIKRVPLPHSYYSV 285
Query: 55 SFCSKQRTLISGGDDGSICMWNLNS 79
+ + T+ GG G + ++ +
Sbjct: 286 NVSTDGSTVWLGGALGDLAAYDAET 310
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 26.7 bits (57), Expect = 0.31
Identities = 7/82 (8%), Positives = 21/82 (25%), Gaps = 8/82 (9%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISF--C 57
V + + R ++ + + + + + SI+
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD 310
Query: 58 SKQRTLISGGDDGSICMWNLNS 79
K D ++ + + S
Sbjct: 311 EKPLLYALSTGDKTLYIHDAES 332
Score = 25.5 bits (54), Expect = 1.0
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQ 60
G + F + ++S K D ++ + + S +RS++
Sbjct: 289 TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES---GEELRSVNQLGHG 345
Query: 61 RTLISGGDDG 70
+I+ D G
Sbjct: 346 PQVITTADMG 355
Score = 25.1 bits (53), Expect = 1.2
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 9/79 (11%)
Query: 6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS---------KLCDSAVRSISF 56
F + + ++ K L+ G I +L+S + A R+ +
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246
Query: 57 CSKQRTLISGGDDGSICMW 75
++
Sbjct: 247 RPGGWQQVAYHRALDRIYL 265
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 26.4 bits (56), Expect = 0.50
Identities = 4/61 (6%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 29 ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNSKL 81
I+ + +I + ++ S S + ++ + + + +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 82 C 82
Sbjct: 66 V 66
Score = 22.5 bits (46), Expect = 9.5
Identities = 1/33 (3%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 48 DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNS 79
I+ + + ++ ++ + + +
Sbjct: 243 GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
Score = 22.5 bits (46), Expect = 9.8
Identities = 2/45 (4%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNS 44
I + I+ + ++ ++ + + +
Sbjct: 233 TNKITARIPVGPD--PAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit,
C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 119
Score = 22.9 bits (49), Expect = 5.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 35 GSICMWNLNSKLCDSAVRSISF 56
SI + L L S RS+ F
Sbjct: 36 FSILILALIPLLHTSKQRSMMF 57
>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease
{Klebsiella aerogenes [TaxId: 28451]}
Length = 181
Score = 22.5 bits (48), Expect = 9.9
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS--KLCDSAV-RSISFC 57
DG I N +++ T + + G I KL D V F
Sbjct: 89 DGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAE-GKIVTAGSIEVGKLADLVVWSPAFFG 147
Query: 58 SKQRTLISGGDDGSICMWNLNSKLC 82
K T+I GG M ++N+ +
Sbjct: 148 VKPATVIKGGMIAIAPMGDINASIP 172
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.132 0.425
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 292,734
Number of extensions: 10321
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 101
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.8 bits)