BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16881
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 34/224 (15%)
Query: 12 LFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT 71
L+N +L+ S++ V FSPD + +A+ DD+TV +W + L T GH+
Sbjct: 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT---GHS 344
Query: 72 QGRIEGWGRVPACPLCRTRVFSTFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
WG V P +T ++ K + + R GQ +T+ H+S+V V F+
Sbjct: 345 SSV---WG-VAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDG 397
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD-- 188
+ S S DKTVKLW+ ++TL H+ V FS DD +AS S+DKTV +W+
Sbjct: 398 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN 456
Query: 189 --MLATL------------------LASGSNDKTVTIWDMRGNL 212
+L TL +AS S+DKTV +W+ G L
Sbjct: 457 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 500
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 34/224 (15%)
Query: 12 LFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT 71
L+N +L+ S++R V FSPD + +A+ DD+TV +W + L T GH+
Sbjct: 83 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHS 139
Query: 72 QGRIEGWGRVPACPLCRTRVFSTFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
WG V P +T ++ K + + R GQ +T+ H+S+V V F+
Sbjct: 140 SSV---WG-VAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDG 192
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD-- 188
+ S S DKTVKLW+ ++TL H+ V FS D +AS S+DKTV +W+
Sbjct: 193 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251
Query: 189 --MLATL------------------LASGSNDKTVTIWDMRGNL 212
+L TL +AS S+DKTV +W+ G L
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL 295
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 34/208 (16%)
Query: 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
S++R V FSPD + +A+ DD+TV +W + L T GH+ WG V P
Sbjct: 17 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSV---WG-VAFSPDG 69
Query: 88 RTRVFSTFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
+T ++ K + + R GQ +T+ H+S+V V F+ + S S DKTVKLW+
Sbjct: 70 QTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD----MLATL--------- 193
++TL H+ V FS D +AS S+DKTV +W+ +L TL
Sbjct: 127 RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 185
Query: 194 ---------LASGSNDKTVTIWDMRGNL 212
+AS S+DKTV +W+ G L
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRNGQL 213
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 34/219 (15%)
Query: 12 LFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT 71
L+N +L+ S++R V FSPD + +A+ DD+TV +W + L T GH+
Sbjct: 370 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHS 426
Query: 72 QGRIEGWGRVPACPLCRTRVFSTFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
WG V P +T ++ K + + R GQ +T+ H+S+V V F+
Sbjct: 427 SSV---WG-VAFSPDDQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDG 479
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD-- 188
+ S S DKTVKLW+ ++TL H+ V FS D +AS S+DKTV +W+
Sbjct: 480 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Query: 189 --MLATL------------------LASGSNDKTVTIWD 207
+L TL +AS S+DKTV +W+
Sbjct: 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 34/224 (15%)
Query: 12 LFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT 71
L+N +L+ S++ V FSPD + +A+ DD+TV +W + L T GH+
Sbjct: 42 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHS 98
Query: 72 QGRIEGWGRVPACPLCRTRVFSTFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
+ G V P +T ++ K + + R GQ +T+ H+S+V V F+
Sbjct: 99 S-SVRG---VAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD-- 188
+ S S DKTVKLW+ ++TL H+ V FS D +AS S+DKTV +W+
Sbjct: 152 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Query: 189 --MLATL------------------LASGSNDKTVTIWDMRGNL 212
+L TL +AS S+DKTV +W+ G L
Sbjct: 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 254
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 34/208 (16%)
Query: 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
S++ V FSPD + +A+ DD+TV +W + L T GH+ + G V P
Sbjct: 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSS-SVRG---VAFSPDG 397
Query: 88 RTRVFSTFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
+T ++ K + + R GQ +T+ H+S+V V F+ + S S DKTVKLW+
Sbjct: 398 QTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD----MLATL--------- 193
++TL H+ V FS D +AS S+DKTV +W+ +L TL
Sbjct: 455 RNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG 513
Query: 194 ---------LASGSNDKTVTIWDMRGNL 212
+AS S+DKTV +W+ G L
Sbjct: 514 VAFSPDGQTIASASDDKTVKLWNRNGQL 541
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 34/222 (15%)
Query: 12 LFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT 71
L+N +L+ S++ V FSPD + +A+ DD+TV +W + L T GH+
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHS 180
Query: 72 QGRIEGWGRVPACPLCRTRVFSTFVKQI-IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
WG V P +T ++ K + + R GQ +T+ H+S+V V F+
Sbjct: 181 SSV---WG-VAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD-- 188
+ S S DKTVKLW+ ++TL H+ V F D +AS S+DKTV +W+
Sbjct: 234 QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Query: 189 --MLATL------------------LASGSNDKTVTIWDMRG 210
+L TL +AS S+DKTV +W+ G
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H+S+V V F+ + S S DKTVKLW+ ++TL H+ V FS D +A
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 177 SGSNDKTVTIWD----MLATL------------------LASGSNDKTVTIWDMRGNL 212
S S+DKTV +W+ +L TL +AS S+DKTV +W+ G L
Sbjct: 74 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 22/79 (27%)
Query: 156 LESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD----MLATL------------------ 193
LE+H+ V FS D +AS S+DKTV +W+ +L TL
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 194 LASGSNDKTVTIWDMRGNL 212
+AS S+DKTV +W+ G L
Sbjct: 72 IASASDDKTVKLWNRNGQL 90
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
V+FSP+ LA+ D+ + +W + D E GH G + V V
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISD----VAWSSDSNLLVS 85
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
++ K + V G+ +T+ H++ V FN +S+L+VSGS D++V++WDV + C
Sbjct: 86 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 23/120 (19%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T+ HT AV+SV+F+ L S S DK +K+W KT+ H ++ +S D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 173 SLLASGSNDKTVTIWDM-----------------------LATLLASGSNDKTVTIWDMR 209
+LL S S+DKT+ IWD+ + L+ SGS D++V IWD++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 175 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 133 LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS--NDKTVTIW 187
+VSGS D V +W++ + ++ L+ HT V ++++AS + NDKT+ ++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
V+FSP+ LA D+ + +W + D E GH G + V V
Sbjct: 32 VKFSPNGEWLAASSADKLIKIWGAYDGKF--EKTISGHKLGISD----VAWSSDSNLLVS 85
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
++ K + V G+ +T+ H++ V FN +S+L+VSGS D++V++WDV + C
Sbjct: 86 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 23/120 (19%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T+ HT AV+SV+F+ L + S DK +K+W KT+ H ++ +S D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 173 SLLASGSNDKTVTIWDM-----------------------LATLLASGSNDKTVTIWDMR 209
+LL S S+DKT+ IWD+ + L+ SGS D++V IWD++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 175 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
V+FSP+ LA+ D+ + +W + D E GH G + V V
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISD----VAWSSDSNLLVS 85
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
++ K + V G+ +T+ H++ V FN +S+L+VSGS D++V++WDV + C
Sbjct: 86 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 23/120 (19%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T+ HT AV+SV+F+ L S S DK +K+W KT+ H ++ +S D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 173 SLLASGSNDKTVTIWDM-----------------------LATLLASGSNDKTVTIWDMR 209
+LL S S+DKT+ IWD+ + L+ SGS D++V IWD++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 175 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 133 LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS--NDKTVTIW 187
+VSGS D V +W++ + ++ L+ HT V ++++AS + NDKT+ ++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 86
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
Q PT V T+ HT AV+SV+F+ L S S DK +K+W KT+
Sbjct: 9 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
H ++ +S D +LL S S+DKT+ IWD+ + L+
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 195 ASGSNDKTVTIWDMR 209
SGS D++V IWD++
Sbjct: 129 VSGSFDESVRIWDVK 143
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 178 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 75 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDV 160
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 53 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 104
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 105 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 164
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
S+ Q PT V T+ HT AV+SV+F+ L S S DK +K+W
Sbjct: 22 SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 81
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM----------------------- 189
KT+ H ++ +S D +LL S S+DKT+ IWD+
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 190 LATLLASGSNDKTVTIWDMR 209
+ L+ SGS D++V IWD++
Sbjct: 142 QSNLIVSGSFDESVRIWDVK 161
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 196 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 235
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDV 158
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 51 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 102
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 162
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
S+ Q PT V T+ HT AV+SV+F+ L S S DK +K+W
Sbjct: 20 SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 79
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM----------------------- 189
KT+ H ++ +S D +LL S S+DKT+ IWD+
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 190 LATLLASGSNDKTVTIWDMR 209
+ L+ SGS D++V IWD++
Sbjct: 140 QSNLIVSGSFDESVRIWDVK 159
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 194 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 233
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 86
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
Q PT V T+ HT AV+SV+F+ L S S DK +K+W KT+
Sbjct: 9 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
H ++ +S D +LL S S+DKT+ IWD+ + L+
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 195 ASGSNDKTVTIWDMR 209
SGS D++V IWD++
Sbjct: 129 VSGSFDESVRIWDVK 143
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 178 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 68 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDV 153
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 46 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 97
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 157
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
Q PT V T+ HT AV+SV+F+ L S S DK +K+W KT+
Sbjct: 20 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 79
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
H ++ +S D +LL S S+DKT+ IWD+ + L+
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 195 ASGSNDKTVTIWDMR 209
SGS D++V IWD++
Sbjct: 140 VSGSFDESVRIWDVK 154
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 189 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 228
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 56 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDV 141
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 34 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 85
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 145
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
Q PT V T+ HT AV+SV+F+ L S S DK +K+W KT+
Sbjct: 8 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 67
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
H ++ +S D +LL S S+DKT+ IWD+ + L+
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 195 ASGSNDKTVTIWDMR 209
SGS D++V IWD++
Sbjct: 128 VSGSFDESVRIWDVK 142
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 177 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 216
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 86
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
Q PT V T+ HT AV+SV+F+ L S S DK +K+W KT+
Sbjct: 9 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
H ++ +S D +LL S S+DKT+ IWD+ + L+
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 195 ASGSNDKTVTIWDMR 209
SGS D++V IWD++
Sbjct: 129 VSGSFDESVRIWDVK 143
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 178 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 47 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDV 132
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 25 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 76
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 136
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 23/120 (19%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T+ HT AV+SV+F+ L S S DK +K+W KT+ H ++ +S D
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 173 SLLASGSNDKTVTIWDM-----------------------LATLLASGSNDKTVTIWDMR 209
+LL S S+DKT+ IWD+ + L+ SGS D++V IWD++
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 168 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 207
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 83
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 23/120 (19%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T+ HT AV+SV+F+ L S S DK +K+W KT+ H ++ +S D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 173 SLLASGSNDKTVTIWDM-----------------------LATLLASGSNDKTVTIWDMR 209
+LL S S+DKT+ IWD+ + L+ SGS D++V IWD++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 175 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D +KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 23/84 (27%)
Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------- 190
P+ + TL HT+ V+ FS + LAS S DK + IW
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 191 ------ATLLASGSNDKTVTIWDM 208
+ LL S S+DKT+ IWD+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDV 97
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 51 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 80
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
Q PT V T+ HT AV+SV+F+ L S S DK +K+W KT+
Sbjct: 3 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
H ++ +S D +LL S S+DKT+ IWD+ + L+
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 195 ASGSNDKTVTIWDMR 209
SGS D++V IWD++
Sbjct: 123 VSGSFDESVRIWDVK 137
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 172 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 51 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 80
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
Q PT V T+ HT AV+SV+F+ L S S DK +K+W KT+
Sbjct: 3 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
H ++ +S D +LL S S+DKT+ IWD+ + L+
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 195 ASGSNDKTVTIWDMR 209
SGS D++V IWD++
Sbjct: 123 VSGSFDESVRIWDVK 137
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 172 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 83
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 23/120 (19%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T+ HT AV+SV+F+ L S S DK +K+W KT+ H ++ +S D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 173 SLLASGSNDKTVTIWDM-----------------------LATLLASGSNDKTVTIWDMR 209
+LL S S+DKT+ IWD+ + L+ SGS D++V IWD++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 175 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 23/84 (27%)
Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------- 190
P+ + TL HT+ V+ FS + LAS S DK + IW
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 191 ------ATLLASGSNDKTVTIWDM 208
+ LL S S+DKT+ IWD+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDV 97
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 50 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDV 135
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 5 PMGDGPSLFN-GTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIM 63
P+G P N + L G S+ V+FSP+ LA+ D+ + +W + D
Sbjct: 2 PLGSTPVKPNYALKFTLAGHTKAVSS---VKFSPNGEWLASSSADKLIKIWGAYDGKF-- 56
Query: 64 ETNDRGHTQGRIE-GWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVT 122
E GH G + W + S + + G+ +T+ H++ V
Sbjct: 57 EKTISGHKLGISDVAWSSD------SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 110
Query: 123 SVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK 182
FN +S+L+VSGS D++V++WDV + C+KTL +H+ V+ F+ D SL+ S S D
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 183 TVTIWD 188
IWD
Sbjct: 171 LCRIWD 176
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 23/120 (19%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T+ HT AV+SV+F+ L S S DK +K+W KT+ H ++ +S D
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 173 SLLASGSNDKTVTIWDM-----------------------LATLLASGSNDKTVTIWDMR 209
+LL S S+DKT+ IWD+ + L+ SGS D++V IWD++
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 171 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 210
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 105 GVY-GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163
G Y G+ +T+ H ++ V ++ S+LLVS S DKT+K+WDV S C+KTL+ H+ YV
Sbjct: 52 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 111
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
CC F+ +L+ SGS D++V IWD+
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDV 137
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRV 91
V+FSP+ LA+ D+ + +W + D E GH G + W +
Sbjct: 30 VKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSD------SNLL 81
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G+ +T+ H++ V FN +S+L+VSGS D++V++WDV +
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 141
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C+KTL +H+ V+ F+ D SL+ S S D IWD
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 23/135 (17%)
Query: 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157
Q PT V T+ HT AV+SV+F+ L S S DK +K+W KT+
Sbjct: 4 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 63
Query: 158 SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----------------------LATLL 194
H ++ +S D +LL S S+DKT+ IWD+ + L+
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 195 ASGSNDKTVTIWDMR 209
SGS D++V IWD++
Sbjct: 124 VSGSFDESVRIWDVK 138
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 32 CVRFSPDTRLLATGGDDETVTVW-------------RSDDLSLIMETNDRGH-TQGRIEG 77
C F+P + L+ +G DE+V +W SD +S + D +G
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 78 WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
LCR ++ T Q + T + V+ V+F+ +++ +
Sbjct: 173 --------LCR--IWDTASGQCLKT----------LIDDDNPPVSFVKFSPNGKYILAAT 212
Query: 138 VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
+D T+KLWD C+KT H +Y FS + SGS D V IW++
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 27/154 (17%)
Query: 80 RVPACPLCRTRVFSTFVKQIIPTRVGVY----GQDSETVGRHTSAVTSVRFNHKSSLLVS 135
R P + VFS V + V+ G T+ HT +V + F+H LL S
Sbjct: 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 167
Query: 136 GSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----- 190
S D T+KLWD CI+T+ H V+ + + + S S DKT+ +W++
Sbjct: 168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 191 ------------------ATLLASGSNDKTVTIW 206
TL+AS SND+TV +W
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 78/205 (38%), Gaps = 56/205 (27%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+R VR + D L+A+ +D+TV VW V A C+
Sbjct: 237 VRMVRPNQDGTLIASCSNDQTVRVW--------------------------VVATKECKA 270
Query: 90 --RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
R V+ I Y SE G T + L+SGS DKT+K+WDV
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETK-----KSGKPGPFLLSGSRDKTIKMWDV 325
Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM------------------ 189
+ C+ TL H +V F + S ++DKT+ +WD
Sbjct: 326 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 385
Query: 190 -----LATLLASGSNDKTVTIWDMR 209
A + +GS D+TV +W+ R
Sbjct: 386 LDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 23/116 (19%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H S VT V F+ S++VS S D T+K+WD + +TL+ HT V +F LLA
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 177 SGSNDKTVTIWDM-----LATL------------------LASGSNDKTVTIWDMR 209
S S D T+ +WD + T+ + S S DKT+ +W+++
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL-- 174
H V VR N +L+ S S D+TV++W V + C L H V C +++ + S
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292
Query: 175 --LASGSNDKTVTIWDMLATLLASGSNDKTVTIWDM 208
A+GS K L SGS DKT+ +WD+
Sbjct: 293 ISEATGSETKKS---GKPGPFLLSGSRDKTIKMWDV 325
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 64.7 bits (156), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 35 FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF-- 92
FS D + +A+ G D+T+ V++++ ++E + H V C F
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEI--KAHED-------EVLCCAFSTDDRFIA 679
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSL 150
+ V + + + G+ T H+ V F + S LL +GS D +KLWD+
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
C T+ HT V C FS DD LLAS S D T+ +WD
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 57.0 bits (136), Expect = 9e-09, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 11/158 (6%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSD-DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV 91
++F+ D + L + DD + VW D + + RGH Q ++ + R+ L +R+
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCIFL----RGH-QETVKDF-RL----LKNSRL 1064
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + + G + H V S +H ++ S S DKT K+W L
Sbjct: 1065 LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLL 1124
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ L H V C FS D +LLA+G ++ + IW++
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT AV F+ + S DKT++++ + + +++H V CC FS DD +A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 177 SGSNDKTVTIWDMLA-------------------------TLLASGSNDKTVTIWDM 208
+ S DK V IW+ + LLA+GS+D + +WD+
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Score = 44.7 bits (104), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 18/164 (10%)
Query: 32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV 91
C FS D R +AT D+ V +W S L+ T D Q + L T
Sbjct: 668 CCAFSTDDRFIATCSVDKKVKIWNSMTGELV-HTYDEHSEQVNCCHFTNSSHHLLLATGS 726
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
F+K + + T+ HT++V RF+ LL S S D T+KLWD S
Sbjct: 727 SDCFLKLWDLNQ----KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 152 CIKTL-------------ESHTRYVTCCTFSCDDSLLASGSNDK 182
K++ E V CC++S D + + + +K
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK 826
Score = 44.3 bits (103), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 7/170 (4%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRG------HTQGRIEGW 78
H S C RFSPD +LLA+ D T+ +W + + N + Q +E
Sbjct: 748 HTNSVNHC-RFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVI 806
Query: 79 GRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV 138
+ + R+ +I + G E H S + F+ ++ L V
Sbjct: 807 VKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALS 866
Query: 139 DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
V+LW+ S + + H +V FS D S + S+D+T+ +W+
Sbjct: 867 QYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 34.3 bits (77), Expect = 0.053, Method: Composition-based stats.
Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 69/234 (29%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRS------------DDLSLIMETND------------- 67
V FSPD T DD+T+ +W + ++ ++ + N+
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQ 953
Query: 68 --RGHTQGRIE--GWGRVPACPLCRTRVFSTF--------VKQIIPTRVGVYGQDSETVG 115
G T G+I+ +V C L + F + +++ R+ ++
Sbjct: 954 LINGRT-GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRI------FQSRF 1006
Query: 116 RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL 175
+H V ++F L+S S D +++W+ CI L H V +S L
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRL-LKNSRL 1064
Query: 176 ASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIW 206
S S D TV +W+++ AT +S S DKT IW
Sbjct: 1065 LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 31.6 bits (70), Expect = 0.35, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI 62
LRG H G +RC FS D+ LLATG D+ + +W + L+
Sbjct: 1129 LRG--HNGC-VRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 62.8 bits (151), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 35 FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR--TRVF 92
FS D + +A+ G D+T+ V++++ +++ + H V C + +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHED-------EVLCCAFSSDDSYIA 680
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSL 150
+ + + G+ T H+ V F +KS+ LL +GS D +KLWD+
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
C T+ HT V C FS DD LLAS S D T+ +WD+
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 57.4 bits (137), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT AV F+ + S DKT++++ + + +++H V CC FS DDS +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 177 SGSNDKTVTIWDMLA-------------------------TLLASGSNDKTVTIWDM 208
+ S DK V IWD LLA+GSND + +WD+
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Score = 51.6 bits (122), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 9/160 (5%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+R ++F+ D + L + +D + VW +T D Q E L +
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWN-------WQTGDYVFLQAHQETVKDFRL--LQDS 1063
Query: 90 RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS 149
R+ S + + G+ H V S + ++ S S DKT K+W
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1123
Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
L+ + L+ H V C FS D LLA+G ++ + IW++
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 19/163 (11%)
Query: 32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV 91
C FS D +AT D+ V +W S L+ T D Q + L T
Sbjct: 669 CCAFSSDDSYIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHLLLATGS 727
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
F+K + + T+ HT++V RF+ LL S S D T++LWDV S
Sbjct: 728 NDFFLKLWDLNQ----KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Query: 152 CIKTL-------------ESHTRYVTCCTFSCD-DSLLASGSN 180
K++ E V CC++S D D ++ + N
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 826
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 7/170 (4%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
H S C RFSPD LLA+ D T+ +W + N + + V
Sbjct: 749 HTNSVNHC-RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 85 PLCRT------RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV 138
C + ++ +++ + G +E H S + F+ L V
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 139 DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
V+LW++ S + H +V FS D S + S+D+T+ +W+
Sbjct: 868 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 87/231 (37%), Gaps = 63/231 (27%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRS------------DDLSLIMETND---------RG-- 69
V FSPD T DD+T+ VW + ++ ++ + N+ RG
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 954
Query: 70 ---HTQGRIEGW--GRVPACPLCRTRVFSTF------VKQIIPTRVGVYGQDSETVGRHT 118
G+I+ +V C L + F +K I V+ S VG H
Sbjct: 955 LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF---SSGVG-HK 1010
Query: 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG 178
AV ++F L+S S D +++W+ + + L++H V DS L S
Sbjct: 1011 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL-LQDSRLLSW 1068
Query: 179 SNDKTVTIWDML-----------------------ATLLASGSNDKTVTIW 206
S D TV +W+++ AT +S S DKT IW
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 30.8 bits (68), Expect = 0.55, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI 62
+RC FS D LLATG D+ + +W D L+
Sbjct: 1137 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.8 bits (151), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 35 FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR--TRVF 92
FS D + +A+ G D+T+ V++++ +++ + H V C + +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHED-------EVLCCAFSSDDSYIA 673
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSL 150
+ + + G+ T H+ V F +KS+ LL +GS D +KLWD+
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
C T+ HT V C FS DD LLAS S D T+ +WD+
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 57.4 bits (137), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT AV F+ + S DKT++++ + + +++H V CC FS DDS +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 177 SGSNDKTVTIWDMLA-------------------------TLLASGSNDKTVTIWDM 208
+ S DK V IWD LLA+GSND + +WD+
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Score = 51.2 bits (121), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 9/160 (5%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+R ++F+ D + L + +D + VW +T D Q E L +
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWN-------WQTGDYVFLQAHQETVKDFRL--LQDS 1056
Query: 90 RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS 149
R+ S + + G+ H V S + ++ S S DKT K+W
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116
Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
L+ + L+ H V C FS D LLA+G ++ + IW++
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 40.8 bits (94), Expect = 7e-04, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 19/163 (11%)
Query: 32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV 91
C FS D +AT D+ V +W S L+ T D Q + L T
Sbjct: 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
F+K + + T+ HT++V RF+ LL S S D T++LWDV S
Sbjct: 721 NDFFLKLWDLNQ----KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Query: 152 CIKTL-------------ESHTRYVTCCTFSCD-DSLLASGSN 180
K++ E V CC++S D D ++ + N
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 7/170 (4%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
H S C RFSPD LLA+ D T+ +W + N + + V
Sbjct: 742 HTNSVNHC-RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 85 PLCRT------RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV 138
C + ++ +++ + G +E H S + F+ L V
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 139 DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
V+LW++ S + H +V FS D S + S+D+T+ +W+
Sbjct: 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 87/231 (37%), Gaps = 63/231 (27%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRS------------DDLSLIMETND---------RG-- 69
V FSPD T DD+T+ VW + ++ ++ + N+ RG
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947
Query: 70 ---HTQGRIEGW--GRVPACPLCRTRVFSTF------VKQIIPTRVGVYGQDSETVGRHT 118
G+I+ +V C L + F +K I V+ S VG H
Sbjct: 948 LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF---SSGVG-HK 1003
Query: 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG 178
AV ++F L+S S D +++W+ + + L++H V DS L S
Sbjct: 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL-LQDSRLLSW 1061
Query: 179 SNDKTVTIWDML-----------------------ATLLASGSNDKTVTIW 206
S D TV +W+++ AT +S S DKT IW
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 30.8 bits (68), Expect = 0.57, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI 62
+RC FS D LLATG D+ + +W D L+
Sbjct: 1130 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
++ L+VSGS D T++LWD+ C++ LE H V C F D+ + SG+ D +
Sbjct: 302 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 359
Query: 186 IWDMLATL 193
+WD++A L
Sbjct: 360 VWDLVAAL 367
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 25/127 (19%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H +AV V F+ K +VS S D+T+K+W+ + ++TL H R + C + D L+
Sbjct: 255 HRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV 310
Query: 177 SGSNDKTVTIWDM-----LATL----------------LASGSNDKTVTIWDMRGNLSVD 215
SGS+D T+ +WD+ L L + SG+ D + +WD+ L
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 216 VPLNYCC 222
P C
Sbjct: 371 APAGTLC 377
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 42/152 (27%)
Query: 93 STFVKQIIPTRVGVYGQDSETV------GRHTSAVTSVR---------FNHKSSLLVSGS 137
++F + + P + QD ET+ GRH+ R + +VSG
Sbjct: 95 NSFYRALYPKII----QDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGL 150
Query: 138 VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD-----MLAT 192
D T+K+WD +L C + L HT V C + D+ ++ +GS+D TV +WD ML T
Sbjct: 151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 208
Query: 193 L----------------LASGSNDKTVTIWDM 208
L + + S D+++ +WDM
Sbjct: 209 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 240
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 38 DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR-VFSTFV 96
D + + + D T+ VW + + N GH +G AC R R V S
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLN--GHKRG--------IACLQYRDRLVVSGSS 314
Query: 97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV--------P 148
I G + H V +RF++K +VSG+ D +K+WD+ P
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAP 372
Query: 149 SLT-CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
+ T C++TL H+ V F D+ + S S+D T+ IWD L
Sbjct: 373 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 28/115 (24%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT +V ++++ + ++++GS D TV++WDV + + TL H V F ++ ++
Sbjct: 172 HTGSVLCLQYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMV 227
Query: 177 SGSNDKTVTIWDMLA------------------------TLLASGSNDKTVTIWD 207
+ S D+++ +WDM + + S S D+T+ +W+
Sbjct: 228 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN 282
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 57.8 bits (138), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRF--NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL 174
H V+ VRF N +VS S DKTVK+W++ + TL HT YV+ S D SL
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575
Query: 175 LASGSNDKTVTIWDM 189
ASG D V +WD+
Sbjct: 576 CASGGKDGVVLLWDL 590
Score = 53.1 bits (126), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/239 (22%), Positives = 94/239 (39%), Gaps = 68/239 (28%)
Query: 18 LILRGSVHIGSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
L+L+G++ ++M +P + ++ + D+++ +W+ L + G Q R+
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWK-----LTKDDKAYGVAQRRL 426
Query: 76 EGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGR-----------------HT 118
G S FV+ ++ + G + G HT
Sbjct: 427 TG--------------HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT 472
Query: 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL----ESHTRYVTCCTFSCD--D 172
V SV F+ + +VS S D+T+KLW+ C T+ E H +V+C FS +
Sbjct: 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQ 531
Query: 173 SLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDM 208
+ S S DKTV +W++ +L ASG D V +WD+
Sbjct: 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 113 TVGRHTSAVTSVRFN-HKSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
T+ HT VT++ + ++VS S DK++ LW D + L H+ +V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 167 TFSCDDSLLASGSNDKTVTIWDMLATL-----------------------LASGSNDKTV 203
S D SGS D + +WD+ A + + S S D+T+
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 204 TIWDMRG 210
+W+ G
Sbjct: 497 KLWNTLG 503
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRS-DDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV 91
V FS D R + + D T+ +W + + + GH W V +
Sbjct: 478 VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH-----RDW--VSCVRFSPNTL 530
Query: 92 FSTFVKQIIPTRVGVYGQDS----ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
T V V V+ + T+ HT V++V + SL SG D V LWD+
Sbjct: 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ +LE+++ C FS + L + + + + IWD+
Sbjct: 591 AEGKKLYSLEANSVIHALC-FSPNRYWLCAAT-EHGIKIWDL 630
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGW 78
+L G V + +RCV++ D R + +G D V VW + + + +GHT
Sbjct: 234 VLMGHV---AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL--QGHTN------ 280
Query: 79 GRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV 138
RV + V S + I G T+ H S + + K ++LVSG+
Sbjct: 281 -RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNA 337
Query: 139 DKTVKLWDVPSLTCIKTLE---SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM------ 189
D TVK+WD+ + C++TL+ H VTC F + + + + S+D TV +WD+
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFI 395
Query: 190 --LATLLASGSNDKTVTIWDMRGN 211
L TL + GS +W +R +
Sbjct: 396 RNLVTLESGGSGG---VVWRIRAS 416
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 81 VPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK 140
+ C R+ S + V G+ T+ HT V S + + ++++SGS D+
Sbjct: 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGSTDR 179
Query: 141 TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
T+K+W+ + CI TL HT V C + + SGS D T+ +WD+
Sbjct: 180 TLKVWNAETGECIHTLYGHTSTVRC--MHLHEKRVVSGSRDATLRVWDI 226
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 38/212 (17%)
Query: 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGW 78
+L+G H + C++F + + +G DD T+ VW + + GHT G
Sbjct: 113 VLKG--HDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTL--VGHTGG----- 161
Query: 79 GRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV 138
V + + + S + + G+ T+ HTS V + + K +VSGS
Sbjct: 162 --VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSR 217
Query: 139 DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD-----MLATL 193
D T+++WD+ + C+ L H V C + D + SG+ D V +WD L TL
Sbjct: 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275
Query: 194 ----------------LASGSNDKTVTIWDMR 209
+ SGS D ++ +WD+
Sbjct: 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 307
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 61/159 (38%), Gaps = 50/159 (31%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
V FSPD R + +GG D + VW + HT R
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKGECM--------HTLSR------------------ 148
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSL 150
G HT V+ VRF+ + ++VSG D VK+WD+ +
Sbjct: 149 ----------------------GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ L+ HT YVT T S D SL AS D +WD+
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 36/171 (21%)
Query: 82 PACPLCRTRVFSTFVKQII------PTRVGV---YGQDSETVGRHTSAVTSVRFNHKSSL 132
P P T+V ST + + P R YG + H++ V+ V ++ +
Sbjct: 22 PQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNF 81
Query: 133 LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-- 190
VS S D +++LW++ + C HT+ V FS D+ + SG D + +W++
Sbjct: 82 AVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE 141
Query: 191 ------------------------ATLLASGSNDKTVTIWDMR-GNLSVDV 216
A ++ SG D V +WD+ G L D+
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCC 166
YG + H+ V+ V + +SGS D T++LWD+ + T + HT+ V
Sbjct: 75 YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 134
Query: 167 TFSCDDSLLASGSNDKTVTIWDMLA 191
FS D+ + SGS DKT+ +W+ L
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWNTLG 159
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 28/119 (23%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDS- 173
HT V SV F+ + +VSGS DKT+KLW+ + C T+ ESH+ +V+C FS + S
Sbjct: 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 174 -LLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDM 208
++ S DK V +W++ +L ASG D +WD+
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 23/122 (18%)
Query: 117 HTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL 174
H+ V+ VRF+ SS ++VS DK VK+W++ + HT Y+ T S D SL
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 175 LASGSNDKTVTIWDM-----LATLLAS----------------GSNDKTVTIWDMRGNLS 213
ASG D +WD+ L TL + ++ IWD+ G +
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 289
Query: 214 VD 215
VD
Sbjct: 290 VD 291
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCC 166
YG + H+ V+ V + +SGS D T++LWD+ + T + HT+ V
Sbjct: 52 YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 111
Query: 167 TFSCDDSLLASGSNDKTVTIWDMLA 191
FS D+ + SGS DKT+ +W+ L
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTLG 136
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 28/119 (23%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDS- 173
HT V SV F+ + +VSGS DKT+KLW+ + C T+ ESH+ +V+C FS + S
Sbjct: 104 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 174 -LLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDM 208
++ S DK V +W++ +L ASG D +WD+
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 23/122 (18%)
Query: 117 HTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL 174
H+ V+ VRF+ SS ++VS DK VK+W++ + HT Y+ T S D SL
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 175 LASGSNDKTVTIWDM-----LATLLAS----------------GSNDKTVTIWDMRGNLS 213
ASG D +WD+ L TL + ++ IWD+ G +
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 266
Query: 214 VD 215
VD
Sbjct: 267 VD 268
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.5 bits (127), Expect = 9e-08, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+R + P + +G DD TV +W ++ + +T EG C
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT---------FEGHEHFVMCVAFNP 150
Query: 90 RVFSTFVKQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKSSL-----LVSGSVDKTV 142
+ STF + V V+ GQ + T V + L +++ S D T+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
K+WD + +C+ TLE H V+ F ++ SGS D T+ IW+
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 47.4 bits (111), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDD-SL 174
H + S+ + ++SGS D TVKLW+ + + +T E H +V C F+ D S
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 175 LASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNLSVD 215
ASG D+TV +W L + + T+T RG VD
Sbjct: 156 FASGCLDRTVKVWS-----LGQSTPNFTLTTGQERGVNYVD 191
Score = 41.2 bits (95), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 32 CVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
CV F+P D A+G D TV VW SL T + T G+ G V PL +
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVW-----SLGQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 91 VFSTFVKQIIPTRVGVYGQDS--ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP 148
+ + ++ Y S T+ H S V+ F+ +++SGS D T+K+W+
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 149 SLT-------------CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLA 195
+ CI T + + F ++L+ G+++ T+++ + + +
Sbjct: 259 TYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318
Query: 196 SGSNDKTVTIWD--MRGNLSV--DVPLN 219
G N I+ +RGN V D PL+
Sbjct: 319 GGKNAAASDIFTAVIRGNEEVEQDEPLS 346
Score = 31.2 bits (69), Expect = 0.47, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 37/164 (22%)
Query: 74 RIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHT----SAVTSVRFNHK 129
R++G P P T ++S RV ++ +++ R + V + +F +
Sbjct: 15 RVKGIDFHPTEPWVLTTLYSG--------RVEIWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ ++ GS D +++++ + + E+H Y+ + SGS+D TV +W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 190 L-------------------------ATLLASGSNDKTVTIWDM 208
+ ASG D+TV +W +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 65/226 (28%)
Query: 10 PSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRG 69
P+L ++ L S+ S + CV+FS D LATG + +T V+R D SL+ +D
Sbjct: 47 PALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDS 105
Query: 70 HTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSA-----VTSV 124
+D E + +S + SV
Sbjct: 106 AAN------------------------------------KDPENLNTSSSPSSDLYIRSV 129
Query: 125 RFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV 184
F+ L +G+ D+ +++WD+ + + L+ H + + + L SGS D+TV
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 185 TIWDML-----------------------ATLLASGSNDKTVTIWD 207
IWD+ +A+GS D+ V +WD
Sbjct: 190 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 23/187 (12%)
Query: 18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVW--RSDDLSLIMETNDRGHTQGRI 75
+IL+G ++ + + P L +G D TV +W R+ SL + D T
Sbjct: 159 MILQGHEQ---DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215
Query: 76 EGWGR-VPACPLCRT-RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLL 133
G G+ + A L R RV+ + ++ ++E+ H +V SV F +
Sbjct: 216 PGDGKYIAAGSLDRAVRVWDSETGFLVER----LDSENESGTGHKDSVYSVVFTRDGQSV 271
Query: 134 VSGSVDKTVKLWDVP------------SLTCIKTLESHTRYVTCCTFSCDDSLLASGSND 181
VSGS+D++VKLW++ S TC T H +V + +D + SGS D
Sbjct: 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331
Query: 182 KTVTIWD 188
+ V WD
Sbjct: 332 RGVLFWD 338
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 42/134 (31%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE------------------S 158
HTS V V+F++ L +G +KT +++ V + + L S
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 159 HTRYVTCCTFSCDDSLLASGSNDKTVTIWDM---------------LATL--------LA 195
Y+ FS D LA+G+ D+ + IWD+ + +L L
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 196 SGSNDKTVTIWDMR 209
SGS D+TV IWD+R
Sbjct: 182 SGSGDRTVRIWDLR 195
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL-- 174
H V SV ++SGS D+ V WD S + L+ H V + SL
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 368
Query: 175 ----LASGSNDKTVTIW 187
A+GS D IW
Sbjct: 369 EYNVFATGSGDCKARIW 385
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 13 FNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ 72
+N E ++ H +R + P + +G DD TV +W ++ + +T
Sbjct: 84 YNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT------- 135
Query: 73 GRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKS 130
EG C + STF + V V+ GQ + T V +
Sbjct: 136 --FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 131 SL-----LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
L +++ S D T+K+WD + +C+ TLE H V+ F ++ SGS D T+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 186 IWD 188
IW+
Sbjct: 254 IWN 256
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDD-SL 174
H + S+ + ++SGS D TVKLW+ + + +T E H +V C F+ D S
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 175 LASGSNDKTVTIWDM 189
ASG D+TV +W +
Sbjct: 156 FASGCLDRTVKVWSL 170
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 17 ELILRGSVHIGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
E G H + CV F+P D A+G D TV VW SL T + T G+
Sbjct: 133 EQTFEGHEHF---VMCVAFNPKDPSTFASGCLDRTVKVW-----SLGQSTPNFTLTTGQE 184
Query: 76 EGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS--ETVGRHTSAVTSVRFNHKSSLL 133
G V PL + + + ++ Y S T+ H S V+ F+ ++
Sbjct: 185 RGVNYVDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 134 VSGSVDKTVKLWDVPSLTCIKTL 156
+SGS D T+K+W+ + KTL
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTL 266
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 74 RIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRH----TSAVTSVRFNHK 129
R++G P P T ++S RV ++ +++ R + V + +F +
Sbjct: 15 RVKGIDFHPTEPWVLTTLYSG--------RVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+ ++ GS D +++++ + + E+H Y+ + SGS+D TV +W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 13 FNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ 72
+N E ++ H +R + P + +G DD TV +W ++ + +T
Sbjct: 84 YNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT------- 135
Query: 73 GRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKS 130
EG C + STF + V V+ GQ + T V +
Sbjct: 136 --FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 131 SL-----LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
L +++ S D T+K+WD + +C+ TLE H V+ F ++ SGS D T+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 186 IWD 188
IW+
Sbjct: 254 IWN 256
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDD-SL 174
H + S+ + ++SGS D TVKLW+ + + +T E H +V C F+ D S
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 175 LASGSNDKTVTIWDM 189
ASG D+TV +W +
Sbjct: 156 FASGCLDRTVKVWSL 170
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 17 ELILRGSVHIGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
E G H + CV F+P D A+G D TV VW SL T + T G+
Sbjct: 133 EQTFEGHEHF---VMCVAFNPKDPSTFASGCLDRTVKVW-----SLGQSTPNFTLTTGQE 184
Query: 76 EGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS--ETVGRHTSAVTSVRFNHKSSLL 133
G V PL + + + ++ Y S T+ H S V+ F+ ++
Sbjct: 185 RGVNYVDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 134 VSGSVDKTVKLWDVPSLTCIKTL 156
+SGS D T+K+W+ + KTL
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTL 266
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 74 RIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRH----TSAVTSVRFNHK 129
R++G P P T ++S RV ++ +++ R + V + +F +
Sbjct: 15 RVKGIDFHPTEPWVLTTLYSG--------RVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+ ++ GS D +++++ + + E+H Y+ + SGS+D TV +W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 13 FNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ 72
+N E ++ H +R + P + +G DD TV +W ++ + +T
Sbjct: 84 YNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT------- 135
Query: 73 GRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKS 130
EG C + STF + V V+ GQ + T V +
Sbjct: 136 --FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 131 SL-----LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
L +++ S D T+K+WD + +C+ TLE H V+ F ++ SGS D T+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 186 IWD 188
IW+
Sbjct: 254 IWN 256
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLESHTRYVTCCTFSCDD-SL 174
H + S+ + ++SGS D TVKLW+ + + +T E H +V C F+ D S
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 175 LASGSNDKTVTIWDM 189
ASG D+TV +W +
Sbjct: 156 FASGCLDRTVKVWSL 170
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 17 ELILRGSVHIGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
E G H + CV F+P D A+G D TV VW SL T + T G+
Sbjct: 133 EQTFEGHEHF---VMCVAFNPKDPSTFASGCLDRTVKVW-----SLGQSTPNFTLTTGQE 184
Query: 76 EGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS--ETVGRHTSAVTSVRFNHKSSLL 133
G V PL T + ++ Y S T+ H S V+ F+ ++
Sbjct: 185 RGVNYVDYYPLPDKPYMIT-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 134 VSGSVDKTVKLWDVPSLT-------------CIKTLESHTRYVTCCTFSCDDSLLASGSN 180
+SGS D T+K+W+ + CI T + + F ++L+ G++
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303
Query: 181 DKTVTIWDMLATLLASGSNDKTVT-IWD--MRGNLSV--DVPL 218
+ T+++ D + L+ SG + + I+ +RGN V D PL
Sbjct: 304 EPTLSL-DPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPL 345
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 74 RIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRH----TSAVTSVRFNHK 129
R++G P P T ++S RV ++ +++ R + V + +F +
Sbjct: 15 RVKGIDFHPTEPWVLTTLYSG--------RVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+ ++ GS D +++++ + + E+H Y+ + SGS+D TV +W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
I TR + S V HT+ V + FN S +L +GS DKTV LWD+ +L + T
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
ESH + +S ++++LAS D+ + +WD+
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 117 HTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKT---LESHTRYVTCCTFSCDD 172
H++ V V ++ SL S + D+ + +WD S T K +++HT V C +F+
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 173 SLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRG 210
+ LA+GS DKTV +WD+R
Sbjct: 288 EFI------------------LATGSADKTVALWDLRN 307
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 28 SNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMET 65
+ + C+ F+P + +LATG D+TV +W +L L + T
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
I TR + S TV HT+ V + FN S +L +GS DKTV LWD+ +L + +
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
ESH + +S ++++LAS D+ + +WD+
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 24/99 (24%)
Query: 117 HTSAVTSVRFN--HKSSLLVSGSVDKTVKLWDVPSLTCIK---TLESHTRYVTCCTFSCD 171
HT+ V V ++ H+S L S + D+ + +WD + K T+++HT V C +F+
Sbjct: 232 HTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 172 DSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRG 210
+ LA+GS DKTV +WD+R
Sbjct: 291 SEFI------------------LATGSADKTVALWDLRN 311
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 28 SNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMET 65
+ + C+ F+P + +LATG D+TV +W +L L + +
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
I TR + S TV HT+ V + FN S +L +GS DKTV LWD+ +L + +
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
ESH + +S ++++LAS D+ + +WD+
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 117 HTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIK---TLESHTRYVTCCTFSCDD 172
HT+ V V ++ SL S + D+ + +WD + K T+++HT V C +F+
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 173 SLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRG 210
+ LA+GS DKTV +WD+R
Sbjct: 294 EFI------------------LATGSADKTVALWDLRN 313
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 28 SNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMET 65
+ + C+ F+P + +LATG D+TV +W +L L + +
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
I TR + S V HT+ V + FN S +L +GS DKTV LWD+ +L + T
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
ESH + +S ++++LAS D+ + +WD+
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 24/99 (24%)
Query: 117 HTSAVTSVRFN--HKSSLLVSGSVDKTVKLWDVPSLTCIKT---LESHTRYVTCCTFSCD 171
H++ V V ++ H+S L S + D+ + +WD S T K +++HT V C +F+
Sbjct: 228 HSAVVEDVAWHLLHES-LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 172 DSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRG 210
+ LA+GS DKTV +WD+R
Sbjct: 287 SEFI------------------LATGSADKTVALWDLRN 307
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 28 SNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMET 65
+ + C+ F+P + +LATG D+TV +W +L L + T
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
I TR + S TV HT+ V + FN S +L +GS DKTV LWD+ +L + +
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
ESH + +S ++++LAS D+ + +WD+
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 24/99 (24%)
Query: 117 HTSAVTSVRFN--HKSSLLVSGSVDKTVKLWDVPSLTCIK---TLESHTRYVTCCTFSCD 171
HT+ V V ++ H+S L S + D+ + +WD + K T+++HT V C +F+
Sbjct: 230 HTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 288
Query: 172 DSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRG 210
+ LA+GS DKTV +WD+R
Sbjct: 289 SEFI------------------LATGSADKTVALWDLRN 309
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 28 SNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMET 65
+ + C+ F+P + +LATG D+TV +W +L L + +
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 93/224 (41%), Gaps = 42/224 (18%)
Query: 18 LILRGSVHIGSNMRC--VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN-DRGHTQGR 74
L+L G V + RC + ++P LLA+ G D + +W ++ S I ++ GH +
Sbjct: 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV 64
Query: 75 IEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS----ETVGRHTSAVTSVRFNHKS 130
R A C + S T + QD T+ H + V SV +
Sbjct: 65 -----RKVAWSPCGNYLASASFDAT--TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 131 SLLVSGSVDKTVKLWDV---PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI- 186
+LL + S DK+V +W+V C+ L SHT+ V + LLAS S D TV +
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Query: 187 ------WDMLATL------------------LASGSNDKTVTIW 206
W ATL LAS S+D+TV IW
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 124 VRFNHKSSLLVSGSVDKTVKLWDVP--SLTCIKTL-ESHTRYVTCCTFSCDDSLLASGSN 180
+ +N +LL S D+ +++W S C L E H R V +S + LAS S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 181 DKTVTIWDM------LATLLASGSNDKTVTIWDMRGNL 212
D T IW T L N+ W GNL
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTC-IKTL 156
I TR + S +V HT+ V + FN S +L +GS DKTV LWD+ +L + +
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 157 ESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
ESH + +S ++++LAS D+ + +WD+
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 24/99 (24%)
Query: 117 HTSAVTSVRFN--HKSSLLVSGSVDKTVKLWDVPSLTCIK---TLESHTRYVTCCTFSCD 171
HT+ V V ++ H+S L S + D+ + +WD S K ++++HT V C +F+
Sbjct: 226 HTAVVEDVSWHLLHES-LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY 284
Query: 172 DSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRG 210
+ LA+GS DKTV +WD+R
Sbjct: 285 SEFI------------------LATGSADKTVALWDLRN 305
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 28 SNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMET 65
+ + C+ F+P + +LATG D+TV +W +L L + +
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
S L+S S D T+ LWD+ ++ + T T +D W +
Sbjct: 190 SGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED------------VSWHL 237
Query: 190 L-ATLLASGSNDKTVTIWDMRGN 211
L +L S ++D+ + IWD R N
Sbjct: 238 LHESLFGSVADDQKLMIWDTRSN 260
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 80/213 (37%), Gaps = 73/213 (34%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+R V + P T LLA G D TV++W + E+ DR
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKE------ESADR--------------------- 93
Query: 90 RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV-- 147
TF ++ G H + V V +++ L + S DK+V +W+
Sbjct: 94 ----TFEMDLLAIIEG-----------HENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 148 --PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI-------WDMLATL----- 193
CI L+ H++ V + ++LLAS S D TV I W+ +A L
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198
Query: 194 ---------------LASGSNDKTVTIWDMRGN 211
L SGS+D TV +W G+
Sbjct: 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 34/124 (27%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-------LTCIKTLESHTRYVTCCTFS 169
H A+ SV + +SLL +GS D TV +W + + +E H V +S
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 170 CDDSLLASGSNDKTVTIWDMLAT---------------------------LLASGSNDKT 202
D LA+ S DK+V IW+ + LLAS S D T
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 203 VTIW 206
V IW
Sbjct: 177 VRIW 180
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 34/116 (29%)
Query: 126 FNHKSSLLVSGSVDKTVKLWDVP--SLTCIKTLE--SHTRYVTCCTFSCDDSLLASGSND 181
F+ +L +GS D+ +KL V T I L+ +H + + + SLLA+GS D
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79
Query: 182 KTVTIW------------DMLATL------------------LASGSNDKTVTIWD 207
TV+IW D+LA + LA+ S DK+V IW+
Sbjct: 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%)
Query: 105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVT 164
G +G + + H V+ + + ++ +S S DKT++LWD+ + T K H V
Sbjct: 63 GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY 122
Query: 165 CCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIW 206
FS D+ + S ++ + +W++L S + + + W
Sbjct: 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW 164
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 117 HTSAVTSV------RFNHKSSLLVSGSVDKTVKLWDVPSLTC-------IKTLESHTRYV 163
H+ VTS+ + N S +L+SGS DKTV +W + K L H +V
Sbjct: 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFV 79
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM 189
+ S ++ S S DKT+ +WD+
Sbjct: 80 SDLALSQENCFAISSSWDKTLRLWDL 105
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
SN+ + SP+ + +ATGG D+ + +W +L+ D G T +I
Sbjct: 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI 261
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 139 DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
D +K+W+ + T ++H V + S + +A+G DK + IWD+L
Sbjct: 193 DGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT V S+ + L VSG+ D + KLWDV C +T H + F + + A
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 177 SGSNDKTVTIWDMLA 191
+GS+D T ++D+ A
Sbjct: 254 TGSDDATCRLFDLRA 268
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
H G M + +PDTRL +G D + +W D + GH + I P
Sbjct: 194 HTGDVMS-LSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGH-ESDINAICFFPNG 249
Query: 85 PLCRT-------RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
T R+F Q + T Y D+ G +TSV F+ LL++G
Sbjct: 250 NAFATGSDDATCRLFDLRADQELMT----YSHDNIICG-----ITSVSFSKSGRLLLAGY 300
Query: 138 VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
D +WD L H V+C + D +A+GS D + IW+
Sbjct: 301 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 40/224 (17%)
Query: 16 TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
T LRG + + + + + D+RLL + D + +W S T ++ H
Sbjct: 58 TRRTLRGHL---AKIYAMHWGTDSRLLVSASQDGKLIIWDS-------YTTNKVHAIPLR 107
Query: 76 EGWGRVPACPLCRTRVFSTFVKQI-----IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
W A V + I + TR G E G HT ++ RF +
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDN 166
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
++ S S D T LWD+ + T HT V + + D L SG+ D + +WD+
Sbjct: 167 QIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 191 ATL-----------------------LASGSNDKTVTIWDMRGN 211
+ A+GS+D T ++D+R +
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+ C RF D +++ + GD T +W D+ +T G + P T
Sbjct: 157 LSCCRFLDDNQIVTSSGD-TTCALW---DIETGQQTTTFTGHTGDVMSLSLAP-----DT 207
Query: 90 RVFSTFV----KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
R+F + ++ R G+ Q T H S + ++ F + +GS D T +L+
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Query: 146 DVPSLTCIKTLESHTRYV---TCCTFSCDDSLLASGSNDKTVTIWDML 190
D+ + + T SH + T +FS LL +G +D +WD L
Sbjct: 265 DLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT V S+ + L VSG+ D + KLWDV C +T H + F + + A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 177 SGSNDKTVTIWDMLA 191
+GS+D T ++D+ A
Sbjct: 243 TGSDDATCRLFDLRA 257
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
H G M + +PDTRL +G D + +W D + GH + I P
Sbjct: 183 HTGDVMS-LSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGH-ESDINAICFFPNG 238
Query: 85 PLCRT-------RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
T R+F Q + T Y D+ G +TSV F+ LL++G
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMT----YSHDNIICG-----ITSVSFSKSGRLLLAGY 289
Query: 138 VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
D +WD L H V+C + D +A+GS D + IW+
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 40/224 (17%)
Query: 16 TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
T LRG + + + + + D+RLL + D + +W S T ++ H
Sbjct: 47 TRRTLRGHL---AKIYAMHWGTDSRLLLSASQDGKLIIWDS-------YTTNKVHAIPLR 96
Query: 76 EGWGRVPACPLCRTRVFSTFVKQI-----IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
W A V + I + TR G E G HT ++ RF +
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDN 155
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
+ V+ S D T LWD+ + T HT V + + D L SG+ D + +WD+
Sbjct: 156 QI-VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 191 ATL-----------------------LASGSNDKTVTIWDMRGN 211
+ A+GS+D T ++D+R +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+ C RF D +++ + GD T +W D+ +T G + P T
Sbjct: 146 LSCCRFLDDNQIVTSSGD-TTCALW---DIETGQQTTTFTGHTGDVMSLSLAP-----DT 196
Query: 90 RVFSTFV----KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
R+F + ++ R G+ Q T H S + ++ F + +GS D T +L+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 146 DVPSLTCIKTLESHTRYV---TCCTFSCDDSLLASGSNDKTVTIWDML 190
D+ + + T SH + T +FS LL +G +D +WD L
Sbjct: 254 DLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT V S+ + L VSG+ D + KLWDV C +T H + F + + A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 177 SGSNDKTVTIWDMLA 191
+GS+D T ++D+ A
Sbjct: 243 TGSDDATCRLFDLRA 257
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
H G M + +PDTRL +G D + +W D + GH + I P
Sbjct: 183 HTGDVMS-LSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGH-ESDINAICFFPNG 238
Query: 85 PLCRT-------RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
T R+F Q + T Y D+ G +TSV F+ LL++G
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMT----YSHDNIICG-----ITSVSFSKSGRLLLAGY 289
Query: 138 VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
D +WD L H V+C + D +A+GS D + IW+
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 40/224 (17%)
Query: 16 TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
T LRG + + + + + D+RLL + D + +W S T ++ H
Sbjct: 47 TRRTLRGHL---AKIYAMHWGTDSRLLLSASQDGKLIIWDS-------YTTNKVHAIPLR 96
Query: 76 EGWGRVPACPLCRTRVFSTFVKQI-----IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
W A V + I + TR G E G HT ++ RF +
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDN 155
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
++ S S D T LWD+ + T HT V + + D L SG+ D + +WD+
Sbjct: 156 QIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 191 ATL-----------------------LASGSNDKTVTIWDMRGN 211
+ A+GS+D T ++D+R +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+ C RF D +++ + GD T +W D+ +T G + P T
Sbjct: 146 LSCCRFLDDNQIVTSSGD-TTCALW---DIETGQQTTTFTGHTGDVMSLSLAP-----DT 196
Query: 90 RVFSTFV----KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
R+F + ++ R G+ Q T H S + ++ F + +GS D T +L+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 146 DVPSLTCIKTLESHTRYV---TCCTFSCDDSLLASGSNDKTVTIWDML 190
D+ + + T SH + T +FS LL +G +D +WD L
Sbjct: 254 DLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT V S+ + L VSG+ D + KLWDV C +T H + F + + A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 177 SGSNDKTVTIWDMLA 191
+GS+D T ++D+ A
Sbjct: 243 TGSDDATCRLFDLRA 257
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
H G M + +PDTRL +G D + +W D + GH + I P
Sbjct: 183 HTGDVMS-LSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGH-ESDINAICFFPNG 238
Query: 85 PLCRT-------RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
T R+F Q + T Y D+ G +TSV F+ LL++G
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMT----YSHDNIICG-----ITSVSFSKSGRLLLAGY 289
Query: 138 VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
D +WD L H V+C + D +A+GS D + IW+
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 40/224 (17%)
Query: 16 TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
T LRG + + + + + D+RLL + D + +W S T ++ H
Sbjct: 47 TRRTLRGHL---AKIYAMHWGTDSRLLVSASQDGKLIIWDS-------YTTNKVHAIPLR 96
Query: 76 EGWGRVPACPLCRTRVFSTFVKQI-----IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
W A V + I + TR G E G HT ++ RF +
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDN 155
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
++ S S D T LWD+ + T HT V + + D L SG+ D + +WD+
Sbjct: 156 QIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 191 ATL-----------------------LASGSNDKTVTIWDMRGN 211
+ A+GS+D T ++D+R +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+ C RF D +++ + GD T +W D+ +T G + P T
Sbjct: 146 LSCCRFLDDNQIVTSSGD-TTCALW---DIETGQQTTTFTGHTGDVMSLSLAP-----DT 196
Query: 90 RVFSTFV----KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
R+F + ++ R G+ Q T H S + ++ F + +GS D T +L+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 146 DVPSLTCIKTLESHTRYV---TCCTFSCDDSLLASGSNDKTVTIWDML 190
D+ + + T SH + T +FS LL +G +D +WD L
Sbjct: 254 DLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT V S+ + L VSG+ D + KLWDV C +T H + F + + A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 177 SGSNDKTVTIWDMLA 191
+GS+D T ++D+ A
Sbjct: 243 TGSDDATCRLFDLRA 257
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
H G M + +PDTRL +G D + +W D + GH + I P
Sbjct: 183 HTGDVMS-LSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGH-ESDINAICFFPNG 238
Query: 85 PLCRT-------RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
T R+F Q + T Y D+ G +TSV F+ LL++G
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMT----YSHDNIICG-----ITSVSFSKSGRLLLAGY 289
Query: 138 VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
D +WD L H V+C + D +A+GS D + IW+
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 40/224 (17%)
Query: 16 TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
T LRG + + + + + D+RLL + D + +W S T ++ H
Sbjct: 47 TRRTLRGHL---AKIYAMHWGTDSRLLVSASQDGKLIIWDS-------YTTNKVHAIPLR 96
Query: 76 EGWGRVPACPLCRTRVFSTFVKQI-----IPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
W A V + I + TR G E G HT ++ RF +
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDN 155
Query: 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
++ S S D T LWD+ + T HT V + + D L SG+ D + +WD+
Sbjct: 156 QIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 191 ATL-----------------------LASGSNDKTVTIWDMRGN 211
+ A+GS+D T ++D+R +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+ C RF D +++ + GD T +W D+ +T G + P T
Sbjct: 146 LSCCRFLDDNQIVTSSGD-TTCALW---DIETGQQTTTFTGHTGDVMSLSLAP-----DT 196
Query: 90 RVFSTFV----KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
R+F + ++ R G+ Q T H S + ++ F + +GS D T +L+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 146 DVPSLTCIKTLESHTRYV---TCCTFSCDDSLLASGSNDKTVTIWDML 190
D+ + + T SH + T +FS LL +G +D +WD L
Sbjct: 254 DLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180
+ S+ ++ L SG++D + ++D+ + + TLE H + TFS D LL + S+
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 181 DKTVTIWDMLATLLA 195
D + I+D+ LA
Sbjct: 227 DGYIKIYDVQHANLA 241
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 7/179 (3%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
+ FSPD++ LATG V ++ + + RG I A +
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI-------AYSPDGKYLA 180
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC 152
S + II G+ T+ H + S+ F+ S LLV+ S D +K++DV
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 153 IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGN 211
TL H +V F DD+ S S+DK+V +WD+ D +W ++ N
Sbjct: 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H V SV +H + S S+D ++LWD+ + IK++++ FS D LA
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA 138
Query: 177 SGSNDKTVTI 186
+G++ V I
Sbjct: 139 TGTHVGKVNI 148
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 7/162 (4%)
Query: 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
G + + +SPD + LA+G D + ++ L+ GH I P L
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL--EGHAM-PIRSLTFSPDSQL 220
Query: 87 CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
T ++K + G T+ H S V +V F + VS S DK+VK+WD
Sbjct: 221 LVTASDDGYIKIYDVQHANLAG----TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 147 VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
V + TC+ T H V ++ + S + S +D+ + I+D
Sbjct: 277 VGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 15/123 (12%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACP---- 85
+R + FSPD++LL T DD + ++ + N G G V CP
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYD------VQHANLAGTLSGHASWVLNVAFCPDDTH 262
Query: 86 LCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
+ + + TR V+ T H V V++N S +VS D+ + ++
Sbjct: 263 FVSSSSDKSVKVWDVGTRTCVH-----TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Query: 146 DVP 148
D P
Sbjct: 318 DCP 320
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 23 SVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVP 82
SV G+N + ++ + TG D+ V VW+ D L ++ + GH G +
Sbjct: 37 SVAWGTNKK-----ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSV-DISH 90
Query: 83 ACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTV 142
P+ + ++ G+ +++ ++ F+ S L +G+ V
Sbjct: 91 TLPIAASSSLDAHIRLWDLEN----GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
++ V S +L++ +++ +S D LASG+ D + I+D+
Sbjct: 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 102 TRVGVYGQDSETVG-------RHTSAVTSVRF----NHKSSLLVSGSVDKTVKLWDV--P 148
+R +Y Q + G H A+ SV + S +V+GS+D VK+W
Sbjct: 9 SRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE 68
Query: 149 SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
L +LE H V S + AS S D + +WD+
Sbjct: 69 RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
T+ H VTS+ + + +LL+S S DKT+ W D +++ + H+ V C
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
T + D + S S DKT+ +WD+ A+++ SGS DKT+
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 204 TIWDMRGN 211
+W ++G
Sbjct: 126 KVWTIKGQ 133
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H+ V + +S S DKT++LWDV + + H V S++
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 177 SGSNDKTVTIWDM----LATLLASGSND 200
SGS DKT+ +W + LATLL G ND
Sbjct: 118 SGSRDKTIKVWTIKGQCLATLL--GHND 143
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
T+ H VTS+ + + +LL+S S DKT+ W D +++ + H+ V C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
T + D + S S DKT+ +WD+ A+++ SGS DKT+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 204 TIWDMRGN 211
+W ++G
Sbjct: 132 KVWTIKGQ 139
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H+ V + +S S DKT++LWDV + + H V S++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 177 SGSNDKTVTIWDM----LATLLASGSND 200
SGS DKT+ +W + LATLL G ND
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHND 149
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
T+ H VTS+ + + +LL+S S DKT+ W D +++ + H+ V C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
T + D + S S DKT+ +WD+ A+++ SGS DKT+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 204 TIWDMRGN 211
+W ++G
Sbjct: 132 KVWTIKGQ 139
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H+ V + +S S DKT++LWDV + + H V S++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 177 SGSNDKTVTIWDM----LATLLASGSND 200
SGS DKT+ +W + LATLL G ND
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHND 149
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
T+ H VTS+ + + +LL+S S DKT+ W D +++ + H+ V C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
T + D + S S DKT+ +WD+ A+++ SGS DKT+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 204 TIWDMRGN 211
+W ++G
Sbjct: 132 KVWTIKGQ 139
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H+ V + +S S DKT++LWDV + + H V S++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 177 SGSNDKTVTIWDM----LATLLASGSND 200
SGS DKT+ +W + LATLL G ND
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHND 149
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
T+ H VTS+ + + +LL+S S DKT+ W D +++ + H+ V C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
T + D + S S DKT+ +WD+ A+++ SGS DKT+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 204 TIWDMRGN 211
+W ++G
Sbjct: 132 KVWTIKGQ 139
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H+ V + +S S DKT++LWDV + + H V S++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 177 SGSNDKTVTIWDM----LATLLASGSND 200
SGS DKT+ +W + LATLL G ND
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHND 149
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 25/101 (24%)
Query: 133 LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA- 191
VSG DK +WD+ S C++ E+H V + ASGS+D T ++D+ A
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 192 ------------------------TLLASGSNDKTVTIWDM 208
LL +G ND T+ +WD+
Sbjct: 273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 39/213 (18%)
Query: 23 SVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVP 82
++H C + D ++L GD T +W + L+ + G V
Sbjct: 151 AMHTNYLSACSFTNSDMQILTASGDG-TCALWDVESGQLLQSFHGHG---------ADVL 200
Query: 83 ACPLCRTRVFSTFVKQIIPTRVGVY----GQDSETVGRHTSAVTSVRFNHKSSLLVSGSV 138
L + +TFV + V+ GQ + H S V SVR+ SGS
Sbjct: 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260
Query: 139 DKTVKLWDVPS--LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------ 190
D T +L+D+ + I + ES + FS LL +G ND T+ +WD+L
Sbjct: 261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320
Query: 191 -----------------ATLLASGSNDKTVTIW 206
T SGS D T+ +W
Sbjct: 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD 171
++V HT+ +++ F + +++ S D T LWDV S +++ H V C +
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 172 DS--LLASGSNDKTVTIWDMLA-----------------------TLLASGSNDKTVTIW 206
++ SG DK +WDM + ASGS+D T ++
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 207 DMRGNLSVDV 216
D+R + V +
Sbjct: 268 DLRADREVAI 277
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 41/176 (23%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
+R++PD R LA+GG+D V VW S +G GW PL
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVWPSAP------------GEG---GW-----VPLQTFTQH 286
Query: 93 STFVKQII--PTRVGVYGQDSETVGRHT-----------------SAVTSVRFNHKSSLL 133
VK + P + V T RH S V S+ ++ L
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 346
Query: 134 VSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
+SG + +W P++ + L+ HT V T S D + +AS + D+T+ +W
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 26/123 (21%)
Query: 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180
++SV + + + L G+ V+LWDV ++ + SH+ V + S + +L+SGS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYILSSGSR 218
Query: 181 DKTVTIWDM------LATL------------------LASGSNDKTVTIWDMRGNLSVDV 216
+ D+ +ATL LASG ND V +W V
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 217 PLN 219
PL
Sbjct: 279 PLQ 281
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLL 175
H++ V S+ +N S +L SGS + DV + + TL H++ V ++ D L
Sbjct: 199 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 256
Query: 176 ASGSNDKTVTIW 187
ASG ND V +W
Sbjct: 257 ASGGNDNLVNVW 268
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 137 SVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
++D +V LW S ++ L E Y++ + + + LA G++ V +WD+
Sbjct: 133 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDD-----LSLIMETNDRGHTQGRIEGWGRVPACPLC 87
+R++PD R LA+GG+D V VW S + L T +G + V CP
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA-------VAWCPW- 207
Query: 88 RTRVFST---FVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS--VDKTV 142
++ V +T + I G V H S V S+ ++ L+SG +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 266
Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
+W P++ + L+ HT V T S D + +AS + D+T+ +W
Sbjct: 267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 26/123 (21%)
Query: 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180
++SV + + + L G+ V+LWDV ++ + SH+ V + S + +L+SGS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYILSSGSR 127
Query: 181 DKTVTIWDM------LATL------------------LASGSNDKTVTIWDMRGNLSVDV 216
+ D+ +ATL LASG ND V +W V
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 187
Query: 217 PLN 219
PL
Sbjct: 188 PLQ 190
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLL 175
H++ V S+ +N S +L SGS + DV + + TL H++ V ++ D L
Sbjct: 108 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 165
Query: 176 ASGSNDKTVTIW 187
ASG ND V +W
Sbjct: 166 ASGGNDNLVNVW 177
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 137 SVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
++D +V LW S ++ L E Y++ + + + LA G++ V +WD+
Sbjct: 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 41/176 (23%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92
+R++PD R LA+GG+D V VW S +G GW PL
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVWPSAP------------GEG---GW-----VPLQTFTQH 275
Query: 93 STFVKQII--PTRVGVYGQDSETVGRHT-----------------SAVTSVRFNHKSSLL 133
VK + P + V T RH S V S+ ++ L
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 335
Query: 134 VSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
+SG + +W P++ + L+ HT V T S D + +AS + D+T+ +W
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 26/110 (23%)
Query: 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180
++SV + + + L G+ V+LWDV ++ + SH+ V + S + +L+SGS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYILSSGSR 207
Query: 181 DKTVTIWDM------LATL------------------LASGSNDKTVTIW 206
+ D+ +ATL LASG ND V +W
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLL 175
H++ V S+ +N S +L SGS + DV + + TL H++ V ++ D L
Sbjct: 188 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 245
Query: 176 ASGSNDKTVTIW 187
ASG ND V +W
Sbjct: 246 ASGGNDNLVNVW 257
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 137 SVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
++D +V LW S ++ L E Y++ + + + LA G++ V +WD+
Sbjct: 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 28 SNMRCVRF--SPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACP 85
S +RC+ + + + TG D T+ VW+ L E++ H G P
Sbjct: 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWK-----LPKESSVPDH--------GEEHDYP 250
Query: 86 LCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
L VF T + P VGV + H ++V +V + +++VSGS D T+ +W
Sbjct: 251 L----VFHTPEEN--PYFVGV-------LRGHMASVRTV--SGHGNIVVSGSYDNTLIVW 295
Query: 146 DVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
DV + C+ L HT + + + S S D T+ IWD+
Sbjct: 296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL-- 174
H V ++++ H +LVSGS D+TV++WD+ C E H V C ++
Sbjct: 161 HDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 175 LASGSNDKTVTIWDM 189
+ +GS D T+ +W +
Sbjct: 220 IVTGSRDNTLHVWKL 234
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT + S ++H+ +S S+D T+++WD+ + + TL+ HT V S D L
Sbjct: 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLV 366
Query: 177 SGSNDKTVTIWD 188
S + D ++ WD
Sbjct: 367 SAAADGSIRGWD 378
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCT 167
G+ T+ HT+ V +R + K LVS + D +++ WD + K HT T
Sbjct: 342 GELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSR-KFSYHHTNLSAITT 398
Query: 168 FSCDDSLLASGSNDK 182
F D++L SGS ++
Sbjct: 399 FYVSDNILVSGSENQ 413
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 26/92 (28%)
Query: 142 VKLWDVPSLTCIKT-LESH-TRYVTCCTFSCDDSLLASGSNDKTVTIWDMLAT------- 192
+K W P +T L H T +TC F +D+ + +G++DK + ++D +
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS 159
Query: 193 ---------------LLASGSNDKTVTIWDMR 209
+L SGS D+TV +WD++
Sbjct: 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 45/218 (20%)
Query: 20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG----RI 75
LRG H+ S + C++F + + TG DD+ + V+ S + +++ + GH G +
Sbjct: 117 LRG--HMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLS--GHDGGVWALKY 170
Query: 76 EGWGRVPACPLCRT-RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLV 134
G + + RT RV+ +K+ T V G +S ++++ +V
Sbjct: 171 AHGGILVSGSTDRTVRVWD--IKKGCCTHV-FEGHNSTVRCLDIVEYKNIKY------IV 221
Query: 135 SGSVDKTVKLWDVPSLTCI-------------KTLESHTRYV--------TCCTFSCDDS 173
+GS D T+ +W +P + + T E + +V + T S +
Sbjct: 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 281
Query: 174 LLASGSNDKTVTIWD---MLATLLASGSNDKTV-TIWD 207
++ SGS D T+ +WD M + SG D+ TI+D
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD 319
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 67 DRGHTQGRIEGWGRV-------PACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTS 119
D G + G + G R P+ P R+ S + G + T G HT
Sbjct: 135 DTGTSNGNLTGQARAMNSVDFKPSRPF---RIISGSDDNTVAIFEGPPFKFKSTFGEHTK 191
Query: 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-------SHTRYVTCCTFSCDD 172
V SVR+N SL S D T+ L++ T E +H+ V T+S D
Sbjct: 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251
Query: 173 SLLASGSNDKTVTIWDMLATL 193
+ +AS S DKT+ IW+ +ATL
Sbjct: 252 TKIASASADKTIKIWN-VATL 271
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 67/192 (34%), Gaps = 52/192 (27%)
Query: 69 GHTQGRIEGWGRVPACPLCRTR--VFSTFVKQII----PTRVGVYGQDSETVGR------ 116
G G + W + +T VFS VK I R+ G+ E G
Sbjct: 77 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136
Query: 117 ---------HTSAVTSVRFNHKSSL-LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCC 166
A+ SV F ++SGS D TV +++ P T HT++V
Sbjct: 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 196
Query: 167 TFSCDDSLLASGSNDKTVTI------------------------------WDMLATLLAS 196
++ D SL AS D T+ + W T +AS
Sbjct: 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256
Query: 197 GSNDKTVTIWDM 208
S DKT+ IW++
Sbjct: 257 ASADKTIKIWNV 268
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 51/169 (30%)
Query: 24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
V I N CV S D + +A GG D V V++ S+
Sbjct: 445 VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV---------------------- 482
Query: 84 CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVK 143
+ VK I+ H + +TSV F++ + LV+ + V
Sbjct: 483 ----------SEVKTIV----------------HPAEITSVAFSNNGAFLVATDQSRKVI 516
Query: 144 LWDVPS---LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ V + L + HT V C ++S D+ LA+GS D +V +W+M
Sbjct: 517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 42/132 (31%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+ VR++PD L A+ G D T+ ++ D
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVD------------------------------- 221
Query: 90 RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS 149
T+ GV+ DS H+ +V + ++ + + S S DKT+K+W+V +
Sbjct: 222 -----------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Query: 150 LTCIKTLESHTR 161
L KT+ TR
Sbjct: 271 LKVEKTIPVGTR 282
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 28 SNMRCVRF--SPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACP 85
S +RC+ + + + TG D T+ VW+ L E++ H G P
Sbjct: 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWK-----LPKESSVPDH--------GEEHDYP 250
Query: 86 LCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
L VF T + P VGV + H ++V +V + +++VSGS D T+ +W
Sbjct: 251 L----VFHTPEEN--PYFVGV-------LRGHXASVRTV--SGHGNIVVSGSYDNTLIVW 295
Query: 146 DVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
DV C+ L HT + + + S S D T+ IWD+
Sbjct: 296 DVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL-- 174
H V ++++ H +LVSGS D+TV++WD+ C E H V C ++
Sbjct: 161 HDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 175 LASGSNDKTVTIWDM 189
+ +GS D T+ +W +
Sbjct: 220 IVTGSRDNTLHVWKL 234
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
HT + S ++H+ +S S D T+++WD+ + TL+ HT V S D L
Sbjct: 309 HTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--DKFLV 366
Query: 177 SGSNDKTVTIWD 188
S + D ++ WD
Sbjct: 367 SAAADGSIRGWD 378
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCT 167
G+ T+ HT+ V +R + K LVS + D +++ WD + K HT T
Sbjct: 342 GELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSR-KFSYHHTNLSAITT 398
Query: 168 FSCDDSLLASGSNDK 182
F D++L SGS ++
Sbjct: 399 FYVSDNILVSGSENQ 413
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 26/92 (28%)
Query: 142 VKLWDVPSLTCIKT-LESH-TRYVTCCTFSCDDSLLASGSNDKTVTIWDMLAT------- 192
+K W P +T L H T +TC F +D+ + +G++DK + ++D +
Sbjct: 102 LKNWYNPKFVPQRTTLRGHXTSVITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLS 159
Query: 193 ---------------LLASGSNDKTVTIWDMR 209
+L SGS D+TV +WD++
Sbjct: 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 45/218 (20%)
Query: 20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG----RI 75
LRG H S + C++F + + TG DD+ + V+ S + +++ + GH G +
Sbjct: 117 LRG--HXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLS--GHDGGVWALKY 170
Query: 76 EGWGRVPACPLCRT-RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLV 134
G + + RT RV+ +K+ T V G +S ++++ +V
Sbjct: 171 AHGGILVSGSTDRTVRVWD--IKKGCCTHV-FEGHNSTVRCLDIVEYKNIKY------IV 221
Query: 135 SGSVDKTVKLWDVPSLTCI-------------KTLESHTRYV--------TCCTFSCDDS 173
+GS D T+ +W +P + + T E + +V + T S +
Sbjct: 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGN 281
Query: 174 LLASGSNDKTVTIWDMLAT---LLASGSNDKTV-TIWD 207
++ SGS D T+ +WD+ + SG D+ TI+D
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYD 319
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 113 TVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLW-----DVPSLTCIKTLESHTRYVTCC 166
T+ H VTS+ + + +LL+S S DKT+ W D +++ + H+ V C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 167 TFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTV 203
T + D + S S DKT+ +WD+ A+ + SGS DKT+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 204 TIWDMRGN 211
+W ++G
Sbjct: 132 KVWTIKGQ 139
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H+ V + +S S DKT++LWDV + + H V S +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII 123
Query: 177 SGSNDKTVTIWDM----LATLLASGSND 200
SGS DKT+ +W + LATLL G ND
Sbjct: 124 SGSRDKTIKVWTIKGQCLATLL--GHND 149
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 103 RVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLT-CIKTLESHT 160
R+ ++G SE HT+ V S+ N +++ +SGS D TV+LWD+ + ++T H
Sbjct: 192 RISIFG--SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249
Query: 161 RYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ F D +GS+D T ++DM
Sbjct: 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL----ES 158
++ VY ++ + VTSV F+ LL +G + +WD + L S
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS 342
Query: 159 HTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
H ++C S D S L +GS DK + IW
Sbjct: 343 HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 37/138 (26%)
Query: 109 QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-------LTCIKTLESHTR 161
Q + + H V F + G +D ++++ S + + L H
Sbjct: 99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG 158
Query: 162 YVTCCTFSCD-DSLLASGSNDKTVTIWDML-----------------------------A 191
Y + C + D ++ L +GS D+T +WD+ A
Sbjct: 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA 218
Query: 192 TLLASGSNDKTVTIWDMR 209
+ SGS D TV +WD+R
Sbjct: 219 NMFISGSCDTTVRLWDLR 236
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 30/111 (27%)
Query: 129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLES-----HTRYVTCCTF-SCDDSLLASGSNDK 182
+ + L++GS D+T LWDV + I S HT V + S + ++ SGS D
Sbjct: 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228
Query: 183 TVTIWDMLATLLA------------------------SGSNDKTVTIWDMR 209
TV +WD+ T A +GS+D T ++DMR
Sbjct: 229 TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 38/77 (49%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T+ H+ V S+ + + + +VS S D + +W+ + ++ H +V C F+ +
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 173 SLLASGSNDKTVTIWDM 189
+A G D +I+++
Sbjct: 121 QSVACGGLDSACSIFNL 137
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 31/138 (22%)
Query: 104 VGVYGQDSETVGR-----HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES 158
V V+ DS +V ++ V SV+++H S L G + V ++DV S T ++T+
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174
Query: 159 HTRYVTCCTFSCDDSLLASGSNDKTVTIWDM------LATL------------------L 194
H V C S + +L+SGS + D+ + TL L
Sbjct: 175 HQARVGC--LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQL 232
Query: 195 ASGSNDKTVTIWDMRGNL 212
ASG ND V IWD R ++
Sbjct: 233 ASGGNDNVVQIWDARSSI 250
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 35 FSPDTRLLATGGDDETVTVWRSDD 58
SPD R+L+T DE + WR D
Sbjct: 357 LSPDGRILSTAASDENLKFWRVYD 380
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 17/158 (10%)
Query: 38 DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG-RIEGWGRVPACPLCRTRVFS--- 93
D LA+GG+D V +W D S I + H + W CP + +
Sbjct: 228 DGLQLASGGNDNVVQIW--DARSSIPKFTKTNHNAAVKAVAW-----CPWQSNLLATGGG 280
Query: 94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVS--GSVDKTVKLWDVPS-- 149
T KQI G TV S VTS+ ++ S ++S G D + +W S
Sbjct: 281 TMDKQIHFWNAAT-GARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
LT + +H V S D +L++ ++D+ + W
Sbjct: 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV 91
C+ S D L TGG D TV W DL + T +I G P +
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSW---DLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGM 243
Query: 92 FSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-SL 150
S+ V+ + V D + H S V S++F + VS D + W P
Sbjct: 244 ESSNVEVL-----HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190
+ ++ ES + V C S DD + +GS DK T+++++
Sbjct: 299 SIFQSKESSS--VLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS 179
A ++ + S + S D + +WD+ + T ++ + HT +C S D + L +G
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 180 NDKTVTIWDM 189
D TV WD+
Sbjct: 203 LDNTVRSWDL 212
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89
+R + PD L GG+ T+++W D RI+ + P C
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIW------------DLAAPTPRIKA-ELTSSAPACYA 146
Query: 90 RVFSTFVKQIIPT----RVGVYGQDSETVGR----HTSAVTSVRFNHKSSLLVSGSVDKT 141
S K + V+ ++T+ R HT + + ++ + L +G +D T
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 142 VKLWDV 147
V+ WD+
Sbjct: 207 VRSWDL 212
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 116 RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC-DDSL 174
H V++V + VSGS D +K+WD+ + + +H VTC S DS+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184
Query: 175 LASGSNDKTVTIWD 188
S S D + +WD
Sbjct: 185 FLSCSEDNRILLWD 198
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H +T V++N + LL S S D + +W + + TL+ HT + C
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV 90
Query: 177 SGSNDKTVTIWDMLATLLASGSNDKTVTIW 206
+GS D ++ +WD+ SN + V W
Sbjct: 91 TGSADYSIKLWDV--------SNGQCVATW 112
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES 158
G+ T+ HT + S+ + + V+GS D ++KLWDV + C+ T +S
Sbjct: 64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS 114
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 39/190 (20%)
Query: 16 TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTV---------W---------RSD 57
T +ILR I RCVR++P+ + A G +++ W RS
Sbjct: 89 TLVILR----INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 144
Query: 58 DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI----IPTRVGVYGQDSET 113
LSL N G +C + R+FS ++K++ PT G E
Sbjct: 145 VLSLDWHPNSVLLAAG---------SCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194
Query: 114 VGRHTSA---VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC 170
+ +S+ V V F+ S + S D TV L D + TL S T + TF
Sbjct: 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 254
Query: 171 DDSLLASGSN 180
+ SL+A+G +
Sbjct: 255 ESSLVAAGHD 264
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 103 RVGVYGQDSETVGRHTSAVTSVRFN-HKSSLLVSGSVDKTVKLWDVPS-------LTCIK 154
+ G ++ V HT+ V + + H +++ SGS D TV +W++P +
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 155 TLESHTRYVTCCTF-SCDDSLLASGSNDKTVTIWDM--LATLLASGSNDKTVTIWDM 208
TLE HT+ V + ++L S D + +WD+ A +L G + TI+ +
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 39/190 (20%)
Query: 16 TELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTV---------W---------RSD 57
T +ILR I RCVR++P+ + A G +++ W RS
Sbjct: 89 TLVILR----INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 144
Query: 58 DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI----IPTRVGVYGQDSET 113
LSL N G +C + R+FS ++K++ PT G E
Sbjct: 145 VLSLDWHPNSVLLAAG---------SCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194
Query: 114 VGRHTSA---VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC 170
+ +S+ V V F+ S + S D TV L D + TL S T + TF
Sbjct: 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 254
Query: 171 DDSLLASGSN 180
+ SL+A+G +
Sbjct: 255 ESSLVAAGHD 264
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-----RYVTCCTFSCD 171
HT V V ++ S + + S DKT K+WD+ S I+ + ++ +SC
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC- 143
Query: 172 DSLLASGSNDKTVTIWD 188
+ +GS DKT+ WD
Sbjct: 144 ---VMTGSWDKTLKFWD 157
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 26/105 (24%)
Query: 131 SLLVSGSVDKTVKLWDVP--SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+ L++GS V+ W+V T K + HT V +S D S + + S DKT +WD
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 189 MLA------------------------TLLASGSNDKTVTIWDMR 209
+ + + + +GS DKT+ WD R
Sbjct: 115 LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS 179
AV + F+ L + D WD + T +KT E + ++ C F+ + ++ A S
Sbjct: 275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 117 HTSAVTSVRF-NHKSSLLVSGSVDKTVKLWDVPS-------LTCIKTLESHTRYVTCCTF 168
HT+ V + + H +++ SGS D TV +W++P + TLE HT+ V +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 169 --SCDDSLLASGSNDKTVTIWDM--LATLLASGSNDKTVTIWDM 208
+ + LL++G D + +WD+ A +L G + TI+ +
Sbjct: 140 HPTAQNVLLSAGC-DNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV---TCCTFSCDDS 173
H V S+ F + +++SGS DKT K+W SL + L++H V +FS +
Sbjct: 103 HQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKF 158
Query: 174 LLASGSNDKTVTIW 187
L AS DKT+ +W
Sbjct: 159 LTASA--DKTIKLW 170
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 13/184 (7%)
Query: 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACP 85
IG S ++ +G D+T VW+ L ++ ++ ++ +
Sbjct: 101 IGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 86 LCRTRVFSTFVK-QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKL 144
+ + ++I T G++ V RH + V F +S S D +KL
Sbjct: 161 ASADKTIKLWQNDKVIKTFSGIHND----VVRHLAVVDDGHF-------ISCSNDGLIKL 209
Query: 145 WDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVT 204
D + ++T E H +V C + +++ G D+TV IW L ++
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITLPAIS 268
Query: 205 IWDM 208
IW +
Sbjct: 269 IWSV 272
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 121 VTSVRFNHKSSLLVSGSVDKTVK---LWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS 177
+ SV ++ + LL+ G D + L+ + TL H V C+ S D ++ S
Sbjct: 62 LNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNV--CSLSFQDGVVIS 119
Query: 178 GSNDKTVTIWDMLATLLASGSNDKTVTIWDMR 209
GS DKT +W + L ++WD +
Sbjct: 120 GSWDKTAKVWKEGS--LVYNLQAHNASVWDAK 149
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H ++ + FN + LL+S S D T+++W + H++ + ++ DD ++
Sbjct: 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI- 304
Query: 177 SGSNDKTVTIWDMLA-TLLA 195
S S D +V +W + TLLA
Sbjct: 305 SCSMDGSVRLWSLKQNTLLA 324
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 116 RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC--DDS 173
H V ++ + VSG D +VK+WD+ +K+ +H+ V C +C D+
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDT 195
Query: 174 LLASGSNDKTVTIWD 188
+ S D + +WD
Sbjct: 196 IFLSCGEDGRILLWD 210
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H S +T ++F L+S S D +K+W V + +TL H VT +
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 177 SGSNDKTVTIWD 188
S S D T+ +W+
Sbjct: 195 SASLDGTIRLWE 206
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL 156
G + T+ H + VT + + ++S S+D T++LW+ + T I T
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H S +T ++F L+S S D +K+W V + +TL H VT +
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 177 SGSNDKTVTIWD 188
S S D T+ +W+
Sbjct: 198 SASLDGTIRLWE 209
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL 156
G + T+ H + VT + + ++S S+D T++LW+ + T I T
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW----DVPSLTCIKTLESHTRYVTCCT 167
E G H S +F V+G D VK+W D + TLE H+ +V
Sbjct: 159 EEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 168 FSCD---DSLLASGSNDKTVTIW 187
+S S +AS S D+T IW
Sbjct: 212 WSPTVLLRSYMASVSQDRTCIIW 234
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 38 DTRLLATGGDDETVTVWR--SDDLSLIMETNDRGHTQGRIEGWGR-VPACPLCRTRVFST 94
++R TGG D V +W+ SD + ++E+ GH+ W R V P R +
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----WVRDVAWSPTVLLRSYMA 223
Query: 95 FVKQ 98
V Q
Sbjct: 224 SVSQ 227
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 117 HTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLES---HTRYVTCCTFSCDD 172
H + VT FN + L+ + SVD TVKLWD+ ++ + + H + V F+ D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 173 S 173
S
Sbjct: 262 S 262
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 117 HTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLES---HTRYVTCCTFSCDD 172
H + VT FN + L+ + SVD TVKLWD+ ++ + + H + V F+ D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 173 S 173
S
Sbjct: 263 S 263
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
SS V T+ ++ V S I L+ H + V CC F + L SGS D + W
Sbjct: 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 27/128 (21%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC--IKTLESHTRYVTC 165
G+D V R+ S T + H + + S S DKT+K+WD +L + E
Sbjct: 91 GRDHPDVHRY-SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHM 149
Query: 166 CTFSCDDSLLASGSNDKTVTIWDMLA------------------------TLLASGSNDK 201
S L+A G+ V + D+ + +LA+ S D
Sbjct: 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 202 TVTIWDMR 209
V +WD+R
Sbjct: 210 RVKLWDVR 217
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 123 SVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIKTLESH 159
S R+++ +L + S D VKLWDV + C+ TL+ H
Sbjct: 195 SPRYDY---ILATASADSRVKLWDVRRASGCLITLDQH 229
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.2 bits (69), Expect = 0.42, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 27/99 (27%)
Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW----DVPSLTCIKTLESHTRYVTCCT 167
E G H S +F V+G D VK+W D + TLE H+ +V
Sbjct: 159 EEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 168 FSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIW 206
+S TV +L + LAS S D+T IW
Sbjct: 212 WS------------PTV----LLRSYLASVSQDRTCIIW 234
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 36 SPDTRLLATGGDDETVTVWR--SDDLSLIMETNDRGHTQGRIEGWGR-VPACPLCRTRVF 92
+ ++R TGG D V +W+ SD + ++E+ GH+ W R V P R +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----WVRDVAWSPTVLLRSY 221
Query: 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH---KSSLLVSGSV------DKTVK 143
V Q ++ QD+E + + +F ++S +SG+V D V
Sbjct: 222 LASVSQ--DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279
Query: 144 LW 145
LW
Sbjct: 280 LW 281
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW----DVPSLTCIKTLESHTRYVTCCT 167
E G H S +F V+G D VK+W D + TLE H+ +V
Sbjct: 159 EEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 168 FSCD---DSLLASGSNDKTVTIW 187
+S S AS S D+T IW
Sbjct: 212 WSPTVLLRSYXASVSQDRTCIIW 234
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 38 DTRLLATGGDDETVTVWR--SDDLSLIMETNDRGHTQGRIEGWGR-VPACPLCRTRVFST 94
++R TGG D V +W+ SD + ++E+ GH+ W R V P R +
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----WVRDVAWSPTVLLRSYXA 223
Query: 95 FVKQ 98
V Q
Sbjct: 224 SVSQ 227
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H+S V S+ FN L S D ++ WDV + I TL H C ++ +LA
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH-----CDDIEIEEDILA 354
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH 159
H+S V S+ FN L S D ++ WDV + I TL H
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 27 GSNMRCVRFSPDT-RLLATGGDDETVTVW--RSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
GS +R V FSPD+ + T G D ++ + +S + +E +D+ QG I + +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDS 264
Query: 84 CPLCRTRVFSTFVKQIIPTR--VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT 141
+T + T V + D + +G V + + ++S S+D T
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT----GNGRIISLSLDGT 320
Query: 142 VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW----------DMLA 191
+ +++ +KT+ H + +T T + L SGS D + W +++
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQDHSNLIV 376
Query: 192 TLLASGSNDKTVTIWD 207
+L S + + + WD
Sbjct: 377 SLDNSKAQEYSSISWD 392
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 27 GSNMRCVRFSPDT-RLLATGGDDETVTVW--RSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
GS +R V FSPD+ + T G D ++ + +S + +E +D+ QG I + +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDS 264
Query: 84 CPLCRTRVFSTFVKQIIPTR--VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT 141
+T + T V + D + +G V + + ++S S+D T
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT----GNGRIISLSLDGT 320
Query: 142 VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW----------DMLA 191
+ +++ +KT+ H + +T T + L SGS D + W +++
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIV 376
Query: 192 TLLASGSNDKTVTIWD 207
+L S + + + WD
Sbjct: 377 SLDNSKAQEYSSISWD 392
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 149 SLTCIKTLESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189
++ + +H+ V F+ D++LASG N+ + IWDM
Sbjct: 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 146 DVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTI 205
D SL T E++ + FS S + KTV +LASG N+ + I
Sbjct: 87 DNGSLELYSTNEANNAINSMARFSNHSSSV------KTVKFNAKQDNVLASGGNNGEIFI 140
Query: 206 WDMRGNLSVDVPLNY 220
WDM N + P NY
Sbjct: 141 WDM--NKCTESPSNY 153
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 27/99 (27%)
Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW----DVPSLTCIKTLESHTRYVTCCT 167
E G H S +F V+G D VK+W D + TLE H+ +V
Sbjct: 159 EEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 168 FSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIW 206
+S TV +L + LAS S D+T IW
Sbjct: 212 WS------------PTV----LLRSYLASVSQDRTCIIW 234
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 38 DTRLLATGGDDETVTVWR--SDDLSLIMETNDRGHTQGRIEGWGR-VPACPLCRTRVFST 94
++R TGG D V +W+ SD + ++E+ GH+ W R V P R +
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----WVRDVAWSPTVLLRSYLA 223
Query: 95 FVKQ 98
V Q
Sbjct: 224 SVSQ 227
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 27/99 (27%)
Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW----DVPSLTCIKTLESHTRYVTCCT 167
E G H S +F V+G D VK+W D + TLE H+ +V
Sbjct: 161 EEDGEHNGTKESRKF-------VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 213
Query: 168 FSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIW 206
+S TV +L + LAS S D+T IW
Sbjct: 214 WS------------PTV----LLRSYLASVSQDRTCIIW 236
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 38 DTRLLATGGDDETVTVWR--SDDLSLIMETNDRGHT 71
++R TGG D V +W+ SD + ++E+ GH+
Sbjct: 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 155 TLESHTRYVTCCTFS-CDDSLLASGSNDKTVTIWDM 189
L H + VT + C D LA+ S D+TV IWD+
Sbjct: 246 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 281
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYV 163
G++ + H VT V N L + SVD+TVK+WD+ + + H V
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300
Query: 164 TCCTFSCDDSLLASGSNDKTVTIW 187
FS D + L + + ++
Sbjct: 301 NAACFSPDGARLLTTDQKSEIRVY 324
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 155 TLESHTRYVTCCTFS-CDDSLLASGSNDKTVTIWDM 189
L H + VT + C D LA+ S D+TV IWD+
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYV 163
G++ + H VT V N L + SVD+TVK+WD+ + + H V
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 164 TCCTFSCDDSLLASGSNDKTVTIW 187
FS D + L + + ++
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVY 323
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 155 TLESHTRYVTCCTFS-CDDSLLASGSNDKTVTIWDM 189
L H + VT + C D LA+ S D+TV IWD+
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYV 163
G++ + H VT V N L + SVD+TVK+WD+ + + H V
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 164 TCCTFSCDDSLLASGSNDKTVTIW 187
FS D + L + + ++
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 63 METNDRGHTQGRIEGWGRVPA-CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAV 121
ET + H Q +I P + RT S F+ I PT G + + + + + A+
Sbjct: 100 FETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAI 159
Query: 122 TSVRFNHKSSLLVSGSVDKTVK 143
S ++ LV+ VD+T+K
Sbjct: 160 RSQYAHYFDLSLVNNGVDETLK 181
>pdb|1PIX|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
The Bacterial Ion Pump Glutaconyl-Coenzyme A
Decarboxylase
pdb|1PIX|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
The Bacterial Ion Pump Glutaconyl-Coenzyme A
Decarboxylase
Length = 587
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 100 IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS 137
IP VG+YG + G H+ + T + + K+++ V G+
Sbjct: 182 IPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGA 219
>pdb|2F9T|A Chain A, Structure Of The Type Iii Coaa From Pseudomonas Aeruginosa
pdb|2F9T|B Chain B, Structure Of The Type Iii Coaa From Pseudomonas Aeruginosa
pdb|2F9W|A Chain A, Structure Of The Type Iii Coaa From Pseudomonas Aeruginosa
pdb|2F9W|B Chain B, Structure Of The Type Iii Coaa From Pseudomonas Aeruginosa
Length = 271
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 16/38 (42%)
Query: 14 NGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETV 51
G L LRG V C PD + TGGD E V
Sbjct: 209 RGCLLXLRGFVREQYAXACELLGPDCEIFLTGGDAELV 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,861,671
Number of Sequences: 62578
Number of extensions: 268218
Number of successful extensions: 1710
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 588
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)