Query psy16881
Match_columns 222
No_of_seqs 122 out of 1215
Neff 9.8
Searched_HMMs 29240
Date Sat Aug 17 00:30:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 3.6E-28 1.2E-32 195.5 23.1 182 19-210 8-217 (304)
2 1vyh_C Platelet-activating fac 100.0 1.9E-26 6.6E-31 192.9 23.0 182 19-210 103-327 (410)
3 4gqb_B Methylosome protein 50; 100.0 4.1E-26 1.4E-30 187.1 23.3 180 26-212 126-333 (344)
4 3ow8_A WD repeat-containing pr 100.0 3.6E-26 1.2E-30 185.5 22.5 178 26-210 79-279 (321)
5 3ow8_A WD repeat-containing pr 99.9 3.6E-26 1.2E-30 185.5 21.8 175 27-208 122-319 (321)
6 2pbi_B Guanine nucleotide-bind 99.9 1.3E-25 4.3E-30 184.5 24.9 185 18-211 58-272 (354)
7 1got_B GT-beta; complex (GTP-b 99.9 7.3E-26 2.5E-30 184.7 23.0 183 18-210 49-257 (340)
8 4ery_A WD repeat-containing pr 99.9 1.5E-25 5.2E-30 180.1 24.4 184 17-210 16-223 (312)
9 2ynn_A Coatomer subunit beta'; 99.9 1.1E-25 3.8E-30 181.0 22.8 179 26-210 54-259 (304)
10 1vyh_C Platelet-activating fac 99.9 7.9E-26 2.7E-30 189.2 21.5 177 26-209 191-410 (410)
11 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.3E-25 4.6E-30 183.6 21.9 181 25-209 14-224 (345)
12 3frx_A Guanine nucleotide-bind 99.9 3.3E-25 1.1E-29 179.4 23.7 157 26-190 64-226 (319)
13 1nr0_A Actin interacting prote 99.9 2.4E-25 8.2E-30 195.1 23.9 176 26-210 58-270 (611)
14 1got_B GT-beta; complex (GTP-b 99.9 7.6E-25 2.6E-29 178.7 23.7 177 26-210 96-301 (340)
15 4gqb_B Methylosome protein 50; 99.9 3.5E-25 1.2E-29 181.5 21.3 141 27-213 82-250 (344)
16 4g56_B MGC81050 protein; prote 99.9 7.5E-25 2.6E-29 180.1 23.0 179 26-210 138-343 (357)
17 3iz6_a 40S ribosomal protein R 99.9 3.8E-25 1.3E-29 183.2 20.3 183 19-210 61-280 (380)
18 3frx_A Guanine nucleotide-bind 99.9 6.4E-25 2.2E-29 177.7 20.8 142 25-210 15-185 (319)
19 2hes_X YDR267CP; beta-propelle 99.9 1.4E-24 4.8E-29 176.5 22.3 183 19-210 9-230 (330)
20 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.1E-24 3.8E-29 178.1 21.4 179 26-210 60-283 (345)
21 2pm7_B Protein transport prote 99.9 1.4E-24 4.9E-29 173.9 21.5 178 26-209 52-284 (297)
22 4ery_A WD repeat-containing pr 99.9 4.8E-24 1.6E-28 171.3 24.1 178 26-210 64-268 (312)
23 2xzm_R RACK1; ribosome, transl 99.9 9.6E-25 3.3E-29 178.2 20.1 145 26-212 20-205 (343)
24 2xzm_R RACK1; ribosome, transl 99.9 7.1E-24 2.4E-28 173.0 24.7 178 26-210 75-285 (343)
25 2hes_X YDR267CP; beta-propelle 99.9 1.2E-24 4E-29 177.0 19.9 179 26-210 57-280 (330)
26 2pm7_B Protein transport prote 99.9 1.3E-24 4.5E-29 174.1 19.6 137 27-210 9-189 (297)
27 2pbi_B Guanine nucleotide-bind 99.9 1.1E-23 3.8E-28 172.9 25.1 175 26-207 153-354 (354)
28 4g56_B MGC81050 protein; prote 99.9 1.7E-24 5.7E-29 178.1 19.6 181 25-210 40-258 (357)
29 3iz6_a 40S ribosomal protein R 99.9 1.3E-24 4.5E-29 179.9 18.4 182 26-211 156-376 (380)
30 4h5i_A Guanine nucleotide-exch 99.9 3.8E-24 1.3E-28 176.5 20.3 176 28-211 134-344 (365)
31 1erj_A Transcriptional repress 99.9 1.3E-23 4.4E-28 174.7 23.3 173 29-209 125-340 (393)
32 2ymu_A WD-40 repeat protein; u 99.9 1.1E-23 3.7E-28 182.1 22.8 172 26-207 384-577 (577)
33 1erj_A Transcriptional repress 99.9 2.1E-23 7.3E-28 173.4 23.5 153 26-210 63-238 (393)
34 3bg1_A Protein SEC13 homolog; 99.9 1.2E-24 4.2E-29 175.8 14.9 138 26-210 12-198 (316)
35 2ymu_A WD-40 repeat protein; u 99.9 1.5E-23 5.1E-28 181.3 21.7 118 18-189 10-127 (577)
36 3bg1_A Protein SEC13 homolog; 99.9 7.1E-24 2.4E-28 171.3 17.2 178 26-209 56-292 (316)
37 3dm0_A Maltose-binding peripla 99.9 4.3E-23 1.5E-27 183.0 23.7 180 26-211 429-633 (694)
38 4h5i_A Guanine nucleotide-exch 99.9 3.1E-23 1.1E-27 171.0 20.8 161 26-191 175-343 (365)
39 3f3f_A Nucleoporin SEH1; struc 99.9 6.6E-23 2.3E-27 164.9 21.1 157 27-189 11-247 (351)
40 3ei3_B DNA damage-binding prot 99.9 1.4E-22 4.8E-27 167.0 22.6 177 26-209 72-281 (383)
41 3dwl_C Actin-related protein 2 99.9 5.9E-24 2E-28 174.6 14.2 178 27-210 11-236 (377)
42 4e54_B DNA damage-binding prot 99.9 3.6E-23 1.2E-27 174.0 19.0 179 27-210 119-327 (435)
43 4e54_B DNA damage-binding prot 99.9 3.1E-23 1.1E-27 174.4 18.2 159 26-190 163-326 (435)
44 4aow_A Guanine nucleotide-bind 99.9 3.4E-22 1.2E-26 161.3 23.1 180 26-211 85-287 (340)
45 1nr0_A Actin interacting prote 99.9 1.7E-22 5.7E-27 177.1 22.5 178 26-210 146-397 (611)
46 1gxr_A ESG1, transducin-like e 99.9 7E-22 2.4E-26 159.0 24.0 182 25-211 49-256 (337)
47 3jrp_A Fusion protein of prote 99.9 2.7E-22 9.3E-27 163.9 21.3 178 27-210 11-240 (379)
48 3dm0_A Maltose-binding peripla 99.9 4E-22 1.4E-26 176.9 22.6 182 19-210 377-592 (694)
49 4gga_A P55CDC, cell division c 99.9 4.1E-22 1.4E-26 166.8 20.9 169 14-190 134-309 (420)
50 1k8k_C P40, ARP2/3 complex 41 99.9 5.9E-22 2E-26 161.8 21.3 181 25-210 50-274 (372)
51 3jrp_A Fusion protein of prote 99.9 4.3E-22 1.5E-26 162.7 20.2 178 26-209 54-286 (379)
52 3k26_A Polycomb protein EED; W 99.9 1E-21 3.5E-26 159.7 21.7 136 26-210 68-260 (366)
53 3gre_A Serine/threonine-protei 99.9 1.9E-22 6.5E-27 169.0 17.5 178 25-209 61-291 (437)
54 4aow_A Guanine nucleotide-bind 99.9 7.7E-22 2.6E-26 159.2 20.5 146 19-211 33-205 (340)
55 3v7d_B Cell division control p 99.9 2.1E-21 7.2E-26 163.8 23.9 178 26-210 161-381 (464)
56 3dw8_B Serine/threonine-protei 99.9 1.1E-21 3.6E-26 164.4 21.8 178 28-211 94-374 (447)
57 2j04_B YDR362CP, TAU91; beta p 99.9 1.1E-22 3.7E-27 175.4 15.6 183 24-211 204-429 (524)
58 2pm9_A Protein WEB1, protein t 99.9 2E-22 6.8E-27 167.1 16.7 161 26-189 164-335 (416)
59 3zwl_B Eukaryotic translation 99.9 3.2E-21 1.1E-25 156.8 23.5 139 19-210 27-206 (369)
60 3vl1_A 26S proteasome regulato 99.9 1.7E-21 5.8E-26 162.0 22.3 180 25-210 137-365 (420)
61 2aq5_A Coronin-1A; WD40 repeat 99.9 6.6E-22 2.2E-26 164.4 19.7 143 26-210 80-254 (402)
62 4ggc_A P55CDC, cell division c 99.9 1.6E-21 5.3E-26 156.0 20.8 168 14-189 54-228 (318)
63 1gxr_A ESG1, transducin-like e 99.9 3.1E-21 1.1E-25 155.2 22.5 179 26-210 96-296 (337)
64 3gre_A Serine/threonine-protei 99.9 4.3E-22 1.5E-26 166.8 18.2 179 26-210 110-359 (437)
65 3ei3_B DNA damage-binding prot 99.9 1.4E-21 4.8E-26 161.0 20.8 158 26-190 117-281 (383)
66 4aez_A CDC20, WD repeat-contai 99.9 2.2E-21 7.5E-26 161.3 22.0 177 26-210 133-336 (401)
67 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-21 4.3E-26 165.2 20.6 160 26-190 101-270 (450)
68 1k8k_C P40, ARP2/3 complex 41 99.9 1.4E-21 4.8E-26 159.6 20.0 182 26-213 7-237 (372)
69 3vl1_A 26S proteasome regulato 99.9 7.8E-22 2.7E-26 164.0 18.8 176 28-210 98-322 (420)
70 3zwl_B Eukaryotic translation 99.9 2E-20 6.7E-25 152.1 26.2 177 26-209 73-303 (369)
71 4a11_B DNA excision repair pro 99.9 1.3E-20 4.4E-25 155.3 25.4 159 26-189 98-274 (408)
72 3dwl_C Actin-related protein 2 99.9 5.2E-22 1.8E-26 163.0 16.9 159 25-190 53-235 (377)
73 3k26_A Polycomb protein EED; W 99.9 7.2E-22 2.5E-26 160.6 17.2 178 26-209 114-365 (366)
74 3mkq_A Coatomer beta'-subunit; 99.9 1.8E-21 6E-26 174.6 21.1 177 27-210 13-217 (814)
75 3lrv_A PRE-mRNA-splicing facto 99.9 2.3E-21 8E-26 158.0 19.5 134 27-209 125-291 (343)
76 3dw8_B Serine/threonine-protei 99.9 3E-21 1E-25 161.6 20.7 178 26-210 27-315 (447)
77 3mmy_A MRNA export factor; mRN 99.9 4.3E-21 1.5E-25 156.0 20.3 117 25-190 37-159 (368)
78 3i2n_A WD repeat-containing pr 99.9 7.1E-21 2.4E-25 154.4 20.6 180 26-210 17-243 (357)
79 2xyi_A Probable histone-bindin 99.9 4.9E-21 1.7E-25 160.9 19.9 181 24-210 125-353 (430)
80 2aq5_A Coronin-1A; WD40 repeat 99.9 6.2E-21 2.1E-25 158.5 19.9 137 27-210 131-299 (402)
81 1r5m_A SIR4-interacting protei 99.9 1.7E-20 5.9E-25 155.2 22.3 178 26-209 148-360 (425)
82 2oaj_A Protein SNI1; WD40 repe 99.9 8.1E-21 2.8E-25 173.2 22.0 146 10-211 3-183 (902)
83 2j04_A TAU60, YPL007P, hypothe 99.9 8.5E-21 2.9E-25 162.7 20.3 135 27-211 85-255 (588)
84 2xyi_A Probable histone-bindin 99.9 7.5E-21 2.6E-25 159.8 19.6 183 27-213 181-413 (430)
85 4gq1_A NUP37; propeller, trans 99.9 6.4E-22 2.2E-26 164.6 12.9 133 33-209 95-285 (393)
86 2pm9_A Protein WEB1, protein t 99.9 9.3E-21 3.2E-25 157.0 19.7 179 26-210 66-294 (416)
87 1pgu_A Actin interacting prote 99.9 2.2E-20 7.4E-25 162.0 22.8 175 27-210 63-283 (615)
88 3sfz_A APAF-1, apoptotic pepti 99.9 2.4E-20 8.2E-25 174.4 24.5 162 18-189 609-772 (1249)
89 3v7d_B Cell division control p 99.9 2.3E-20 7.9E-25 157.4 21.9 185 26-214 202-426 (464)
90 3jro_A Fusion protein of prote 99.9 6.7E-21 2.3E-25 170.7 19.2 181 26-210 52-285 (753)
91 3odt_A Protein DOA1; ubiquitin 99.9 3.4E-20 1.1E-24 147.8 21.3 181 19-213 13-218 (313)
92 3i2n_A WD repeat-containing pr 99.9 3.6E-20 1.2E-24 150.2 21.6 180 26-209 64-290 (357)
93 3vu4_A KMHSV2; beta-propeller 99.9 3.9E-20 1.3E-24 151.8 21.8 80 111-190 188-270 (355)
94 3mkq_A Coatomer beta'-subunit; 99.9 1.3E-20 4.6E-25 168.8 20.4 179 26-210 54-259 (814)
95 1r5m_A SIR4-interacting protei 99.9 4.2E-20 1.4E-24 152.9 21.7 179 27-210 45-319 (425)
96 4a11_B DNA excision repair pro 99.9 5.4E-20 1.9E-24 151.6 22.3 179 26-210 42-276 (408)
97 2w18_A PALB2, fancn, partner a 99.9 1.8E-20 6.3E-25 151.8 18.7 135 27-209 178-356 (356)
98 2j04_B YDR362CP, TAU91; beta p 99.9 6E-21 2.1E-25 164.5 16.9 157 27-189 266-426 (524)
99 2oaj_A Protein SNI1; WD40 repe 99.9 1.1E-21 3.6E-26 179.0 12.8 143 27-208 435-659 (902)
100 3jro_A Fusion protein of prote 99.9 1E-20 3.5E-25 169.5 18.4 178 27-210 9-238 (753)
101 1p22_A F-BOX/WD-repeat protein 99.9 8.9E-20 3E-24 153.2 22.1 170 26-209 172-364 (435)
102 4gq1_A NUP37; propeller, trans 99.9 7.1E-21 2.4E-25 158.3 15.1 137 25-210 134-348 (393)
103 1sq9_A Antiviral protein SKI8; 99.9 4.5E-20 1.5E-24 152.2 19.8 185 27-214 62-327 (397)
104 1sq9_A Antiviral protein SKI8; 99.9 1.6E-20 5.4E-25 154.9 16.9 178 27-210 121-395 (397)
105 3lrv_A PRE-mRNA-splicing facto 99.9 3.5E-20 1.2E-24 151.0 18.7 165 35-211 44-245 (343)
106 2w18_A PALB2, fancn, partner a 99.9 1E-20 3.5E-25 153.3 14.4 162 27-216 111-321 (356)
107 3odt_A Protein DOA1; ubiquitin 99.9 1.2E-19 4.2E-24 144.5 20.2 171 26-210 103-296 (313)
108 3vu4_A KMHSV2; beta-propeller 99.8 9E-20 3.1E-24 149.6 18.7 80 131-210 148-271 (355)
109 1yfq_A Cell cycle arrest prote 99.8 5.1E-20 1.7E-24 148.8 16.7 138 25-210 9-179 (342)
110 3sfz_A APAF-1, apoptotic pepti 99.8 1.4E-19 4.6E-24 169.4 21.6 177 26-209 656-912 (1249)
111 4aez_A CDC20, WD repeat-contai 99.8 2.6E-19 9E-24 148.8 20.4 135 26-210 216-380 (401)
112 1pgu_A Actin interacting prote 99.8 2.9E-19 9.9E-24 154.9 21.1 171 29-210 408-614 (615)
113 1p22_A F-BOX/WD-repeat protein 99.8 4.6E-19 1.6E-23 148.8 21.7 178 21-213 127-329 (435)
114 3f3f_A Nucleoporin SEH1; struc 99.8 1.5E-19 5.1E-24 145.2 17.8 79 113-191 209-337 (351)
115 2ovr_B FBW7, F-BOX/WD repeat p 99.8 4.5E-19 1.6E-23 149.1 21.2 173 26-213 158-352 (445)
116 2j04_A TAU60, YPL007P, hypothe 99.8 6.6E-20 2.3E-24 157.2 15.6 162 26-212 14-213 (588)
117 4ggc_A P55CDC, cell division c 99.8 3.7E-19 1.3E-23 142.2 18.4 162 26-190 149-314 (318)
118 2ovr_B FBW7, F-BOX/WD repeat p 99.8 7E-19 2.4E-23 147.9 19.8 172 27-213 118-312 (445)
119 4gga_A P55CDC, cell division c 99.8 1.7E-18 5.8E-23 144.8 21.2 130 30-210 108-261 (420)
120 3mmy_A MRNA export factor; mRN 99.8 1.5E-18 5.2E-23 140.9 20.3 135 26-210 85-304 (368)
121 1yfq_A Cell cycle arrest prote 99.8 3E-18 1E-22 138.3 21.1 183 25-216 54-289 (342)
122 2vdu_B TRNA (guanine-N(7)-)-me 99.8 6E-19 2.1E-23 148.8 17.4 185 28-213 5-275 (450)
123 2oit_A Nucleoporin 214KDA; NH2 99.8 3.3E-19 1.1E-23 150.4 15.1 127 26-190 91-222 (434)
124 1l0q_A Surface layer protein; 99.7 9.2E-16 3.1E-20 126.2 23.3 173 28-210 32-233 (391)
125 2oit_A Nucleoporin 214KDA; NH2 99.7 2.8E-17 9.5E-22 138.6 10.9 150 28-212 37-225 (434)
126 3bws_A Protein LP49; two-domai 99.7 6.9E-16 2.4E-20 128.6 18.4 140 27-210 122-292 (433)
127 1l0q_A Surface layer protein; 99.7 3.4E-15 1.1E-19 122.9 21.9 174 27-210 73-275 (391)
128 2hqs_A Protein TOLB; TOLB, PAL 99.7 9E-15 3.1E-19 122.4 23.2 181 27-217 178-394 (415)
129 3bws_A Protein LP49; two-domai 99.7 2.5E-15 8.4E-20 125.3 19.1 135 26-210 168-334 (433)
130 2ojh_A Uncharacterized protein 99.6 4.6E-14 1.6E-18 110.7 20.8 177 27-210 41-258 (297)
131 1nir_A Nitrite reductase; hemo 99.5 5E-13 1.7E-17 115.6 18.3 136 29-214 180-360 (543)
132 2ecf_A Dipeptidyl peptidase IV 99.5 1.3E-12 4.3E-17 116.3 19.4 152 27-182 36-230 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.5 3.8E-12 1.3E-16 106.4 19.7 156 27-193 222-389 (415)
134 1ri6_A Putative isomerase YBHE 99.5 8.6E-12 2.9E-16 100.1 19.6 176 26-209 36-261 (343)
135 3vgz_A Uncharacterized protein 99.4 2.6E-11 9E-16 97.8 20.2 183 27-210 88-303 (353)
136 3vgz_A Uncharacterized protein 99.4 1.2E-11 4.1E-16 99.8 18.0 175 27-209 40-261 (353)
137 3u4y_A Uncharacterized protein 99.4 3.4E-11 1.1E-15 96.6 20.4 174 30-212 85-306 (331)
138 1pby_B Quinohemoprotein amine 99.4 1.4E-11 5E-16 98.5 17.9 172 29-213 83-314 (337)
139 1ri6_A Putative isomerase YBHE 99.4 4.2E-11 1.4E-15 96.0 20.6 175 28-209 84-307 (343)
140 1k32_A Tricorn protease; prote 99.4 7.9E-12 2.7E-16 115.6 17.2 173 27-209 295-501 (1045)
141 1jmx_B Amine dehydrogenase; ox 99.4 7.8E-11 2.7E-15 94.8 20.7 173 29-210 44-325 (349)
142 1nir_A Nitrite reductase; hemo 99.4 1.8E-11 6E-16 105.9 17.4 126 34-210 144-311 (543)
143 3u4y_A Uncharacterized protein 99.4 7.1E-11 2.4E-15 94.7 18.9 135 27-212 40-210 (331)
144 3o4h_A Acylamino-acid-releasin 99.4 2.5E-11 8.7E-16 105.2 16.5 170 27-210 21-227 (582)
145 2ojh_A Uncharacterized protein 99.4 4.5E-11 1.5E-15 93.4 16.2 157 27-191 84-258 (297)
146 1xfd_A DIP, dipeptidyl aminope 99.3 1.4E-10 4.6E-15 102.8 20.6 155 29-189 62-287 (723)
147 3hfq_A Uncharacterized protein 99.3 4.7E-10 1.6E-14 90.7 21.8 182 26-208 84-315 (347)
148 3scy_A Hypothetical bacterial 99.3 5.6E-10 1.9E-14 90.8 21.4 176 26-209 48-290 (361)
149 3hfq_A Uncharacterized protein 99.3 7.5E-11 2.6E-15 95.5 15.6 135 27-209 39-217 (347)
150 1pby_B Quinohemoprotein amine 99.3 1.3E-10 4.4E-15 92.9 16.4 160 27-191 134-310 (337)
151 3scy_A Hypothetical bacterial 99.3 4.3E-10 1.5E-14 91.5 19.3 91 119-209 211-336 (361)
152 2z3z_A Dipeptidyl aminopeptida 99.3 6.3E-11 2.1E-15 104.8 15.2 74 116-189 255-340 (706)
153 1xfd_A DIP, dipeptidyl aminope 99.3 1.2E-11 4.3E-16 109.5 10.6 149 28-181 17-193 (723)
154 2z3z_A Dipeptidyl aminopeptida 99.3 2.5E-10 8.4E-15 101.0 18.3 152 28-189 82-291 (706)
155 2ecf_A Dipeptidyl peptidase IV 99.3 7.6E-11 2.6E-15 104.8 14.8 73 116-189 284-365 (741)
156 3o4h_A Acylamino-acid-releasin 99.3 2.2E-11 7.4E-16 105.7 10.8 108 31-189 153-274 (582)
157 1k32_A Tricorn protease; prote 99.2 1.4E-10 4.9E-15 107.3 15.3 114 27-190 378-501 (1045)
158 1jmx_B Amine dehydrogenase; ox 99.2 3.1E-10 1.1E-14 91.2 14.1 110 33-190 5-133 (349)
159 1q7f_A NHL, brain tumor CG1071 99.2 8.5E-09 2.9E-13 81.1 20.5 182 28-213 30-241 (286)
160 1z68_A Fibroblast activation p 99.2 1.3E-10 4.6E-15 103.0 10.4 104 32-189 20-137 (719)
161 3azo_A Aminopeptidase; POP fam 99.2 1.1E-09 3.8E-14 96.2 16.0 113 27-189 129-272 (662)
162 4a5s_A Dipeptidyl peptidase 4 99.1 1.5E-09 5E-14 97.0 15.2 154 29-189 18-200 (740)
163 1q7f_A NHL, brain tumor CG1071 99.1 2.7E-08 9.2E-13 78.2 20.6 133 28-210 121-280 (286)
164 1jof_A Carboxy-CIS,CIS-muconat 99.1 6.3E-09 2.2E-13 85.1 17.2 156 28-189 40-222 (365)
165 3fvz_A Peptidyl-glycine alpha- 99.1 3.2E-08 1.1E-12 79.8 20.1 97 118-214 90-232 (329)
166 1z68_A Fibroblast activation p 99.1 4.3E-10 1.5E-14 99.7 9.6 151 30-188 62-284 (719)
167 1jof_A Carboxy-CIS,CIS-muconat 99.0 6.6E-09 2.3E-13 85.0 13.8 128 27-193 192-343 (365)
168 2bkl_A Prolyl endopeptidase; m 99.0 8.6E-09 2.9E-13 91.4 13.5 113 28-189 121-259 (695)
169 3fvz_A Peptidyl-glycine alpha- 98.9 4.8E-08 1.6E-12 78.8 16.4 182 28-211 91-323 (329)
170 1xip_A Nucleoporin NUP159; bet 98.9 2.5E-08 8.6E-13 82.5 13.9 107 26-193 87-193 (388)
171 3no2_A Uncharacterized protein 98.9 8.7E-08 3E-12 75.7 16.4 125 38-214 4-159 (276)
172 2xdw_A Prolyl endopeptidase; a 98.9 5.9E-08 2E-12 86.2 16.2 112 29-190 126-267 (710)
173 3azo_A Aminopeptidase; POP fam 98.9 9E-08 3.1E-12 84.0 16.8 161 27-190 23-225 (662)
174 3pe7_A Oligogalacturonate lyas 98.8 1.4E-07 4.7E-12 77.1 15.7 154 30-190 83-272 (388)
175 2dg1_A DRP35, lactonase; beta 98.8 9.6E-07 3.3E-11 70.7 20.1 134 27-209 44-212 (333)
176 2oiz_A Aromatic amine dehydrog 98.8 3.2E-07 1.1E-11 75.1 16.9 66 124-192 259-335 (361)
177 3no2_A Uncharacterized protein 98.8 3.6E-07 1.2E-11 72.1 16.5 134 28-213 37-199 (276)
178 1qks_A Cytochrome CD1 nitrite 98.8 7.1E-07 2.4E-11 77.5 19.6 134 27-210 196-373 (567)
179 1xip_A Nucleoporin NUP159; bet 98.8 6E-08 2.1E-12 80.2 12.3 138 29-212 39-193 (388)
180 3pe7_A Oligogalacturonate lyas 98.8 3E-07 1E-11 75.0 16.2 96 33-177 41-141 (388)
181 1rwi_B Serine/threonine-protei 98.8 5.3E-07 1.8E-11 69.9 16.2 135 28-211 108-265 (270)
182 3c5m_A Oligogalacturonate lyas 98.7 3.9E-07 1.3E-11 74.3 15.7 155 33-190 86-272 (396)
183 3dsm_A Uncharacterized protein 98.7 1.8E-06 6.1E-11 69.6 18.4 177 27-216 83-308 (328)
184 3e5z_A Putative gluconolactona 98.7 1.2E-06 4.1E-11 69.1 17.0 157 27-190 68-245 (296)
185 4a5s_A Dipeptidyl peptidase 4 98.7 2.2E-07 7.6E-12 82.9 13.7 151 31-189 65-292 (740)
186 1rwi_B Serine/threonine-protei 98.7 2.6E-06 8.9E-11 65.9 18.3 175 29-212 25-224 (270)
187 2xdw_A Prolyl endopeptidase; a 98.6 2.8E-06 9.7E-11 75.4 17.3 72 117-189 231-318 (710)
188 2gop_A Trilobed protease; beta 98.6 8.6E-07 2.9E-11 71.2 12.5 58 121-181 106-190 (347)
189 2oiz_A Aromatic amine dehydrog 98.5 1.5E-06 5E-11 71.1 12.8 52 121-173 307-360 (361)
190 1yr2_A Prolyl oligopeptidase; 98.5 9.7E-07 3.3E-11 78.8 12.6 110 29-189 164-301 (741)
191 3e5z_A Putative gluconolactona 98.5 5.2E-06 1.8E-10 65.4 15.6 106 27-182 171-278 (296)
192 2z2n_A Virginiamycin B lyase; 98.5 7.2E-05 2.5E-09 58.2 21.8 113 27-189 14-127 (299)
193 2dg1_A DRP35, lactonase; beta 98.5 3.7E-05 1.3E-09 61.3 19.9 158 27-190 86-262 (333)
194 2gop_A Trilobed protease; beta 98.5 8.5E-06 2.9E-10 65.3 16.1 65 119-190 217-290 (347)
195 2qc5_A Streptogramin B lactona 98.4 0.00019 6.6E-09 55.8 22.4 153 27-189 19-174 (300)
196 1qks_A Cytochrome CD1 nitrite 98.4 1E-05 3.4E-10 70.3 15.4 103 37-190 165-274 (567)
197 3sjl_D Methylamine dehydrogena 98.4 7.6E-06 2.6E-10 67.5 13.9 126 34-210 39-208 (386)
198 2z2n_A Virginiamycin B lyase; 98.4 0.00015 5.1E-09 56.4 21.0 174 27-211 56-256 (299)
199 2bkl_A Prolyl endopeptidase; m 98.4 2.3E-05 7.7E-10 69.4 17.5 151 31-189 171-347 (695)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 98.4 3E-05 1E-09 61.1 16.5 72 119-190 226-298 (314)
201 3iuj_A Prolyl endopeptidase; h 98.3 1.1E-05 3.6E-10 71.6 14.3 111 28-189 129-266 (693)
202 3dsm_A Uncharacterized protein 98.3 6.9E-05 2.4E-09 60.2 17.2 111 27-190 43-160 (328)
203 3c5m_A Oligogalacturonate lyas 98.3 1.2E-05 4.1E-10 65.4 12.7 107 29-188 239-379 (396)
204 3sjl_D Methylamine dehydrogena 98.3 3.6E-05 1.2E-09 63.4 15.5 137 33-211 83-257 (386)
205 3g4e_A Regucalcin; six bladed 98.3 0.00012 4.2E-09 57.7 18.0 115 27-189 53-178 (297)
206 3g4e_A Regucalcin; six bladed 98.3 6.7E-05 2.3E-09 59.2 16.3 109 28-180 149-261 (297)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 98.3 0.00045 1.5E-08 54.2 20.9 72 119-190 172-255 (314)
208 2hz6_A Endoplasmic reticulum t 98.2 6.6E-07 2.3E-11 73.5 4.4 156 38-212 8-195 (369)
209 2qc5_A Streptogramin B lactona 98.2 0.00063 2.2E-08 52.8 20.9 152 28-189 62-216 (300)
210 2qe8_A Uncharacterized protein 98.2 0.00027 9.2E-09 57.0 18.2 112 28-182 67-216 (343)
211 3dr2_A Exported gluconolactona 98.2 0.00016 5.4E-09 57.3 16.4 115 27-189 85-222 (305)
212 2mad_H Methylamine dehydrogena 98.1 0.00065 2.2E-08 55.7 19.1 70 122-192 270-351 (373)
213 2mad_H Methylamine dehydrogena 98.1 0.00034 1.1E-08 57.4 17.0 68 123-191 70-156 (373)
214 3hrp_A Uncharacterized protein 98.0 0.00067 2.3E-08 56.3 18.6 152 28-189 131-296 (409)
215 1yr2_A Prolyl oligopeptidase; 98.0 0.00056 1.9E-08 60.9 18.3 71 116-188 314-390 (741)
216 2ghs_A AGR_C_1268P; regucalcin 98.0 0.0023 7.8E-08 51.1 20.1 156 27-190 89-259 (326)
217 2ghs_A AGR_C_1268P; regucalcin 97.9 0.0013 4.4E-08 52.6 18.0 60 121-181 232-292 (326)
218 3c75_H MADH, methylamine dehyd 97.9 0.00044 1.5E-08 57.8 14.8 137 32-210 122-295 (426)
219 1yiq_A Quinohemoprotein alcoho 97.9 0.00086 2.9E-08 59.5 16.8 24 132-155 321-344 (689)
220 1kb0_A Quinohemoprotein alcoho 97.8 0.00089 3.1E-08 59.2 16.1 85 131-215 328-513 (677)
221 3c75_H MADH, methylamine dehyd 97.8 0.00064 2.2E-08 56.8 14.1 87 123-209 122-247 (426)
222 3hrp_A Uncharacterized protein 97.8 0.0037 1.3E-07 51.8 18.7 65 123-189 271-352 (409)
223 3dr2_A Exported gluconolactona 97.6 0.0018 6.1E-08 51.1 13.5 60 122-185 242-301 (305)
224 2qe8_A Uncharacterized protein 97.6 0.0025 8.6E-08 51.2 14.4 74 117-190 65-153 (343)
225 3nol_A Glutamine cyclotransfer 97.5 0.0028 9.6E-08 49.2 13.3 151 27-191 42-201 (262)
226 1mda_H Methylamine dehydrogena 97.5 0.0011 3.9E-08 54.2 10.8 88 123-210 69-194 (368)
227 2iwa_A Glutamine cyclotransfer 97.4 0.0077 2.6E-07 47.0 14.9 150 29-191 22-181 (266)
228 3iuj_A Prolyl endopeptidase; h 97.4 0.0095 3.2E-07 52.7 17.0 73 115-190 277-358 (693)
229 2hz6_A Endoplasmic reticulum t 97.4 0.0001 3.5E-09 60.3 3.8 83 129-213 8-115 (369)
230 3mbr_X Glutamine cyclotransfer 97.3 0.022 7.4E-07 43.8 15.6 153 24-190 16-178 (243)
231 3nok_A Glutaminyl cyclase; bet 97.2 0.0095 3.2E-07 46.4 12.5 38 27-65 54-91 (268)
232 3q7m_A Lipoprotein YFGL, BAMB; 97.2 0.042 1.4E-06 44.3 17.1 76 130-207 277-375 (376)
233 1kv9_A Type II quinohemoprotei 97.1 0.017 5.9E-07 50.9 15.5 24 132-155 316-339 (668)
234 3qqz_A Putative uncharacterize 97.1 0.05 1.7E-06 42.1 15.8 146 24-218 23-212 (255)
235 2ece_A 462AA long hypothetical 97.1 0.036 1.2E-06 46.4 15.9 60 120-179 322-399 (462)
236 3hxj_A Pyrrolo-quinoline quino 97.1 0.0099 3.4E-07 46.8 12.1 47 140-188 195-241 (330)
237 1kb0_A Quinohemoprotein alcoho 97.0 0.007 2.4E-07 53.5 11.9 50 140-190 457-506 (677)
238 2xe4_A Oligopeptidase B; hydro 97.0 0.0028 9.7E-08 56.7 9.3 68 123-190 225-303 (751)
239 3q7m_A Lipoprotein YFGL, BAMB; 97.0 0.041 1.4E-06 44.3 15.3 28 38-65 52-79 (376)
240 2ece_A 462AA long hypothetical 97.0 0.03 1E-06 46.9 14.5 58 123-180 192-272 (462)
241 1fwx_A Nitrous oxide reductase 96.8 0.0022 7.7E-08 55.4 6.7 125 28-190 277-430 (595)
242 1yiq_A Quinohemoprotein alcoho 96.8 0.004 1.4E-07 55.2 8.5 51 126-176 482-533 (689)
243 3hxj_A Pyrrolo-quinoline quino 96.4 0.088 3E-06 41.2 12.9 86 122-212 140-246 (330)
244 1flg_A Protein (quinoprotein e 96.4 0.32 1.1E-05 42.1 17.3 26 132-157 338-363 (582)
245 1npe_A Nidogen, entactin; glyc 96.3 0.25 8.5E-06 37.7 21.0 97 119-216 122-245 (267)
246 2iwa_A Glutamine cyclotransfer 96.3 0.14 4.9E-06 39.7 13.3 148 32-190 70-236 (266)
247 1mda_H Methylamine dehydrogena 96.2 0.026 9E-07 46.1 9.1 69 124-193 269-348 (368)
248 2ad6_A Methanol dehydrogenase 96.2 0.44 1.5E-05 41.1 17.1 26 132-157 318-343 (571)
249 2fp8_A Strictosidine synthase; 96.1 0.39 1.3E-05 37.7 15.9 58 122-180 188-248 (322)
250 1fwx_A Nitrous oxide reductase 95.8 0.081 2.8E-06 45.8 10.7 68 121-189 279-359 (595)
251 1w6s_A Methanol dehydrogenase 95.7 0.95 3.2E-05 39.4 17.9 26 131-156 324-349 (599)
252 3pbp_A Nucleoporin NUP82; beta 95.6 0.35 1.2E-05 40.2 13.3 71 117-187 123-208 (452)
253 3nok_A Glutaminyl cyclase; bet 95.6 0.31 1E-05 37.9 12.3 87 121-210 57-164 (268)
254 3tc9_A Hypothetical hydrolase; 95.6 0.7 2.4E-05 38.3 15.5 70 121-190 228-300 (430)
255 3nol_A Glutamine cyclotransfer 95.4 0.29 1E-05 37.9 11.6 87 121-210 45-155 (262)
256 3mbr_X Glutamine cyclotransfer 95.2 0.53 1.8E-05 36.0 12.2 88 121-210 23-133 (243)
257 2fp8_A Strictosidine synthase; 95.0 0.95 3.3E-05 35.4 17.2 31 29-59 20-50 (322)
258 2p9w_A MAL S 1 allergenic prot 94.9 0.63 2.1E-05 37.3 12.5 70 120-190 138-214 (334)
259 2ad6_A Methanol dehydrogenase 94.3 0.15 5.2E-06 44.0 8.1 31 129-159 474-504 (571)
260 1flg_A Protein (quinoprotein e 94.2 0.14 4.7E-06 44.5 7.8 48 129-176 496-544 (582)
261 1k3i_A Galactose oxidase precu 94.0 0.4 1.4E-05 41.9 10.3 68 123-190 247-322 (656)
262 2p4o_A Hypothetical protein; p 93.8 1.8 6.3E-05 33.6 17.8 30 28-57 32-61 (306)
263 4hw6_A Hypothetical protein, I 93.6 2.6 8.9E-05 34.9 14.2 31 30-60 141-173 (433)
264 1k3i_A Galactose oxidase precu 92.8 0.79 2.7E-05 40.1 10.2 89 123-211 190-324 (656)
265 2xe4_A Oligopeptidase B; hydro 92.5 1.9 6.4E-05 38.5 12.3 30 121-150 273-305 (751)
266 3amr_A 3-phytase; beta-propell 92.4 3.6 0.00012 33.2 14.8 73 118-190 179-262 (355)
267 2ism_A Putative oxidoreductase 92.2 3.5 0.00012 33.0 12.7 27 28-55 31-57 (352)
268 1tl2_A L10, protein (tachylect 91.6 3.4 0.00012 31.2 11.0 60 121-184 90-156 (236)
269 1kv9_A Type II quinohemoprotei 91.3 7.1 0.00024 34.2 15.3 71 123-193 234-335 (668)
270 1ijq_A LDL receptor, low-densi 91.2 4.4 0.00015 31.7 18.4 31 28-58 30-61 (316)
271 1w6s_A Methanol dehydrogenase 91.0 0.93 3.2E-05 39.4 8.5 46 129-174 483-529 (599)
272 2p4o_A Hypothetical protein; p 90.7 4.8 0.00016 31.1 13.6 69 119-189 32-102 (306)
273 3amr_A 3-phytase; beta-propell 90.6 5.8 0.0002 32.0 15.9 68 120-188 129-207 (355)
274 3p5b_L Low density lipoprotein 90.6 6.1 0.00021 32.2 19.0 56 121-176 161-217 (400)
275 4a2l_A BT_4663, two-component 90.5 9.1 0.00031 34.0 17.4 112 28-188 406-523 (795)
276 4hw6_A Hypothetical protein, I 90.3 6.9 0.00023 32.3 16.2 68 122-189 231-302 (433)
277 3v64_C Agrin; beta propeller, 90.2 6 0.0002 31.5 17.9 28 30-57 75-103 (349)
278 1n7d_A LDL receptor, low-densi 89.7 3 0.0001 36.9 10.7 68 122-189 499-569 (699)
279 3m0c_C LDL receptor, low-densi 89.5 11 0.00039 33.8 19.3 68 122-189 474-544 (791)
280 3pbp_A Nucleoporin NUP82; beta 89.4 2.1 7.1E-05 35.7 8.8 70 120-190 67-157 (452)
281 3a9g_A Putative uncharacterize 89.3 7 0.00024 31.3 11.9 27 28-55 29-55 (354)
282 2p9w_A MAL S 1 allergenic prot 88.7 8 0.00027 30.9 17.7 65 122-186 66-163 (334)
283 3p5b_L Low density lipoprotein 88.7 8.6 0.00029 31.3 20.3 71 120-190 203-276 (400)
284 2xzh_A Clathrin heavy chain 1; 88.1 9.1 0.00031 30.8 17.0 118 34-162 73-201 (365)
285 3qqz_A Putative uncharacterize 87.8 7.6 0.00026 29.7 10.6 72 116-188 24-97 (255)
286 3kya_A Putative phosphatase; s 87.3 13 0.00043 31.5 13.2 32 30-61 141-174 (496)
287 1n7d_A LDL receptor, low-densi 86.2 1.4 4.9E-05 39.0 6.4 67 123-189 457-526 (699)
288 3kya_A Putative phosphatase; s 84.8 17 0.00058 30.7 13.2 67 122-189 250-339 (496)
289 3v65_B Low-density lipoprotein 84.3 15 0.00051 29.6 21.0 72 119-190 202-276 (386)
290 3sov_A LRP-6, low-density lipo 84.2 13 0.00046 29.1 15.4 68 122-189 82-152 (318)
291 3tc9_A Hypothetical hydrolase; 83.9 8.5 0.00029 31.7 9.9 71 118-190 178-256 (430)
292 4a2l_A BT_4663, two-component 83.9 23 0.00077 31.5 22.9 71 118-189 356-434 (795)
293 1npe_A Nidogen, entactin; glyc 82.4 13 0.00046 27.7 19.5 71 119-191 167-238 (267)
294 1ijq_A LDL receptor, low-densi 81.7 17 0.00056 28.3 17.3 70 120-190 121-194 (316)
295 3sbq_A Nitrous-oxide reductase 81.6 13 0.00043 32.3 9.9 59 121-179 380-453 (638)
296 2g8s_A Glucose/sorbosone dehyd 81.4 18 0.00063 28.7 13.1 29 28-56 18-46 (353)
297 3v64_C Agrin; beta propeller, 81.3 18 0.00063 28.6 17.6 70 120-190 160-233 (349)
298 4gq2_M Nucleoporin NUP120; bet 80.4 3.2 0.00011 38.2 6.5 37 120-156 237-273 (950)
299 3das_A Putative oxidoreductase 80.3 21 0.00072 28.6 14.1 31 28-58 32-62 (347)
300 3sre_A PON1, serum paraoxonase 79.8 22 0.00075 28.6 13.3 61 120-181 222-287 (355)
301 1bpo_A Protein (clathrin); cla 79.5 27 0.00091 29.4 17.0 145 34-189 72-233 (494)
302 1cru_A Protein (soluble quinop 79.1 26 0.0009 29.0 15.3 30 28-57 27-56 (454)
303 1tl2_A L10, protein (tachylect 79.0 9 0.00031 28.9 7.4 65 120-189 42-114 (236)
304 3v9f_A Two-component system se 77.2 38 0.0013 29.9 20.6 53 8-60 38-98 (781)
305 3sov_A LRP-6, low-density lipo 76.7 25 0.00085 27.5 17.9 71 120-190 123-196 (318)
306 4gq2_M Nucleoporin NUP120; bet 76.5 4.5 0.00015 37.2 6.2 37 29-65 237-273 (950)
307 1xi4_A Clathrin heavy chain; a 76.2 46 0.0016 32.4 12.6 116 35-161 73-199 (1630)
308 3v9f_A Two-component system se 76.1 41 0.0014 29.7 15.4 68 119-189 450-522 (781)
309 3f7f_A Nucleoporin NUP120; nuc 75.1 5.7 0.0002 35.3 6.2 36 120-157 223-258 (729)
310 3v65_B Low-density lipoprotein 74.2 32 0.0011 27.6 15.5 69 120-189 247-316 (386)
311 4fhn_B Nucleoporin NUP120; pro 73.1 3 0.0001 39.1 4.2 36 121-156 240-275 (1139)
312 3ei3_A DNA damage-binding prot 72.3 66 0.0023 30.3 14.3 131 7-189 491-634 (1158)
313 3s94_A LRP-6, low-density lipo 71.3 51 0.0017 28.6 17.4 70 120-189 85-157 (619)
314 3m0c_C LDL receptor, low-densi 70.8 59 0.002 29.2 20.0 71 120-190 515-588 (791)
315 4fhn_B Nucleoporin NUP120; pro 68.7 4.5 0.00015 37.9 4.3 37 30-66 240-276 (1139)
316 3f7f_A Nucleoporin NUP120; nuc 68.1 10 0.00034 33.7 6.1 37 28-66 222-258 (729)
317 2ism_A Putative oxidoreductase 68.0 39 0.0013 26.7 9.3 56 120-178 32-95 (352)
318 2xzh_A Clathrin heavy chain 1; 67.0 48 0.0017 26.7 9.5 66 121-186 262-327 (365)
319 3sre_A PON1, serum paraoxonase 63.3 56 0.0019 26.1 14.6 69 119-190 165-251 (355)
320 2xbg_A YCF48-like protein; pho 58.5 62 0.0021 25.1 15.1 66 118-185 204-273 (327)
321 2xn4_A Kelch-like protein 2; s 56.7 46 0.0016 25.2 7.6 81 129-211 155-277 (302)
322 3a9g_A Putative uncharacterize 56.4 69 0.0024 25.3 8.8 56 120-177 30-92 (354)
323 3zwu_A Alkaline phosphatase PH 55.4 70 0.0024 27.7 9.0 59 121-179 478-549 (592)
324 1bpo_A Protein (clathrin); cla 54.2 98 0.0033 26.0 10.5 66 121-186 261-326 (494)
325 2wg3_C Hedgehog-interacting pr 53.9 95 0.0032 25.8 15.3 29 28-56 14-43 (463)
326 2vpj_A Kelch-like protein 12; 53.1 66 0.0023 24.2 8.0 60 129-190 159-230 (301)
327 4a0p_A LRP6, LRP-6, low-densit 51.4 1.2E+02 0.0041 26.3 18.6 30 29-58 38-68 (628)
328 3ii7_A Kelch-like protein 7; p 51.2 77 0.0026 23.9 11.3 23 129-151 101-129 (306)
329 2be1_A Serine/threonine-protei 49.3 72 0.0025 25.4 7.7 30 130-159 10-39 (339)
330 1cru_A Protein (soluble quinop 46.2 1.2E+02 0.004 25.1 8.8 59 120-178 28-97 (454)
331 2be1_A Serine/threonine-protei 44.3 52 0.0018 26.2 6.1 30 129-158 110-139 (339)
332 2xbg_A YCF48-like protein; pho 43.8 1.1E+02 0.0038 23.6 15.5 67 118-187 162-230 (327)
333 1q47_A Semaphorin 3A; beta pro 43.7 1E+02 0.0036 25.9 8.2 67 120-186 405-487 (495)
334 3ii7_A Kelch-like protein 7; p 43.3 1E+02 0.0035 23.2 8.1 60 129-190 55-126 (306)
335 4aor_D Trypsin inhibitor 3; hy 41.0 7.1 0.00024 19.4 0.4 7 216-222 15-21 (37)
336 3sbq_A Nitrous-oxide reductase 40.3 61 0.0021 28.2 6.1 66 123-189 327-406 (638)
337 2vpj_A Kelch-like protein 12; 39.2 1.2E+02 0.0041 22.7 8.7 81 129-211 112-232 (301)
338 4a9v_A PHOX; hydrolase, beta-p 38.9 1.9E+02 0.0066 25.0 9.9 61 119-179 476-549 (592)
339 4asc_A Kelch repeat and BTB do 38.8 1.1E+02 0.0038 23.2 7.3 60 129-190 148-220 (315)
340 3s94_A LRP-6, low-density lipo 37.0 2E+02 0.0069 24.7 18.2 69 121-189 394-465 (619)
341 3das_A Putative oxidoreductase 34.6 1.7E+02 0.0059 23.2 10.3 53 119-171 32-90 (347)
342 1zgk_A Kelch-like ECH-associat 31.2 1.7E+02 0.0058 22.0 7.9 60 129-190 168-239 (308)
343 4a0p_A LRP6, LRP-6, low-densit 31.1 2.6E+02 0.0088 24.1 18.6 70 119-189 389-463 (628)
344 3al9_A Plexin-A2; beta-propell 31.0 1.3E+02 0.0043 25.7 6.8 67 120-186 401-476 (539)
345 2woz_A Kelch repeat and BTB do 29.7 1.8E+02 0.0062 22.0 7.1 61 129-190 109-183 (318)
346 3nvq_A Semaphorin-7A; beta-pro 29.7 2.1E+02 0.007 24.8 7.8 55 132-186 382-444 (590)
347 1olz_A Semaphorin 4D; developm 28.0 2.4E+02 0.0082 24.7 8.1 67 120-186 398-477 (663)
348 4gz8_A Semaphorin-3A; multi-do 27.2 2.1E+02 0.0071 25.2 7.5 55 132-186 431-495 (667)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=3.6e-28 Score=195.52 Aligned_cols=182 Identities=21% Similarity=0.335 Sum_probs=137.5
Q ss_pred EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ 98 (222)
Q Consensus 19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (222)
++.+| .+.|.+++|+|++++|++|+.||+|++||+.++..+..... +... +.. ..+.+.....+.+.....
T Consensus 8 ~~~~h---~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~--~~~~-v~~---~~~~~~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 8 TFSNR---SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV--TETP-VRA---GKFIARKNWIIVGSDDFR 78 (304)
T ss_dssp EEEEE---CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CSSC-EEE---EEEEGGGTEEEEEETTSE
T ss_pred eecCC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec--cCCc-EEE---EEEeCCCCEEEEECCCCE
Confidence 44555 78899999999999999999999999999998876665421 1111 111 111112222223333334
Q ss_pred eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcC-CCCEEE
Q psy16881 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSC-DDSLLA 176 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~-~~~~l~ 176 (222)
+..|+.. .+.....+.+|...|.+++|+|+++++++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|+
T Consensus 79 i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 79 IRVFNYN-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EEEEETT-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred EEEEECC-CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 5555431 11222356789999999999999999999999999999999876 45567889999999999999 678999
Q ss_pred EeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 177 SGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 177 s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+|+.|++|++||+. ..++++++.|++|++||++.
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 99999999999973 24799999999999999984
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.95 E-value=1.9e-26 Score=192.89 Aligned_cols=182 Identities=29% Similarity=0.423 Sum_probs=141.5
Q ss_pred EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ 98 (222)
Q Consensus 19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (222)
.+.+| .+.|.+++|+|++++|++|+.||+|++||+.++.....+ .+|... +.. +.+.+.....+.+.....
T Consensus 103 ~l~gh---~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l--~~h~~~-V~~---v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 103 ALSGH---RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--KGHTDS-VQD---ISFDHSGKLLASCSADMT 173 (410)
T ss_dssp EEECC---SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE--CCCSSC-EEE---EEECTTSSEEEEEETTSC
T ss_pred eeccc---CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE--eccCCc-EEE---EEEcCCCCEEEEEeCCCe
Confidence 44455 788999999999999999999999999999988776655 233322 111 122222222233333334
Q ss_pred eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG 178 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~ 178 (222)
+..|+... ......+.+|...|.+++|+|+++++++|+.|++|++||+++++++..+.+|...|.++.+++++.+|+++
T Consensus 174 i~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 174 IKLWDFQG-FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp CCEEETTS-SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEeCCC-CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence 55554311 11223456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCC-------------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 179 SNDKTVTIWDML-------------------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 179 s~D~~i~lwd~~-------------------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+.|++|++||+. ..++++|+.|++|++||++.
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999973 23699999999999999984
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=4.1e-26 Score=187.09 Aligned_cols=180 Identities=20% Similarity=0.211 Sum_probs=131.1
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccce-eeeeeeeeEeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV-FSTFVKQIIPTRV 104 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 104 (222)
|.+.|.+++|+|+|++|++|+.||+|++||+.++..+..+ .+|.... .. +.+.......+ .......+..|+.
T Consensus 126 H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~--~~h~~~V-~~---~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY--RAHAAQV-TC---VAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCE-EE---EEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE--cCcCCce-EE---EEecCCCCCceeeeccccccccccc
Confidence 4788999999999999999999999999999998887766 3333221 11 12222222222 2223344555543
Q ss_pred eeeccCCcc--ccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeC
Q psy16881 105 GVYGQDSET--VGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSN 180 (222)
Q Consensus 105 ~~~~~~~~~--~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~ 180 (222)
... ..... ...|...+.+++|+|++ +++++|+.||.|+|||+++++++.++.+|...|++++|+|++ ++|++++.
T Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 200 RCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp TSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET
T ss_pred ccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC
Confidence 211 11111 22356679999999864 689999999999999999999999999999999999999998 57999999
Q ss_pred CCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881 181 DKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGNL 212 (222)
Q Consensus 181 D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~ 212 (222)
|++|++||+. ..+++++|.|++|++|++..+.
T Consensus 279 D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 279 DCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999999974 2468899999999999998553
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-26 Score=185.47 Aligned_cols=178 Identities=22% Similarity=0.331 Sum_probs=136.3
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|.+++|+|+++++++++.|++|++||+.++..+...... .. .+.. +.+.+.....+.......+..++..
T Consensus 79 h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~--~~-~~~~---~~~spdg~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG--PV-DAWT---LAFSPDSQYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--TT-CCCC---EEECTTSSEEEEECTTSEEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC--Cc-cEEE---EEECCCCCEEEEEcCCCcEEEEEcC
Confidence 3788999999999999999999999999999988776654321 11 0111 1122222222222333334333321
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
. ......+..|...|.+++|+|+++++++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|+
T Consensus 153 ~-~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 153 S-GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp T-CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred C-CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 1 111123456778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 186 IWDML-----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 186 lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+||+. ..+|++++.|++|++||+++
T Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 99974 35799999999999999973
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-26 Score=185.48 Aligned_cols=175 Identities=26% Similarity=0.372 Sum_probs=135.9
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
...+.+++|+|++++|++|+.||+|++|++.+............ .+.. +.+.+.....+.......+..++..
T Consensus 122 ~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~---~v~~---~~~spdg~~lasg~~dg~i~iwd~~- 194 (321)
T 3ow8_A 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK---FILS---IAYSPDGKYLASGAIDGIINIFDIA- 194 (321)
T ss_dssp TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS---CEEE---EEECTTSSEEEEEETTSCEEEEETT-
T ss_pred CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc---eEEE---EEECCCCCEEEEEcCCCeEEEEECC-
Confidence 56688899999999999999999999999998776655432111 1111 1222233333333333344444421
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l 186 (222)
.......+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++
T Consensus 195 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~i 274 (321)
T 3ow8_A 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV 274 (321)
T ss_dssp TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 11122345679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCC-----------------------CCeEEEeeCCCcEEEEeC
Q psy16881 187 WDML-----------------------ATLLASGSNDKTVTIWDM 208 (222)
Q Consensus 187 wd~~-----------------------~~~l~s~~~d~~i~iwd~ 208 (222)
||+. ..+|++++.|++|++||.
T Consensus 275 wd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 275 WDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9984 357999999999999995
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=1.3e-25 Score=184.52 Aligned_cols=185 Identities=23% Similarity=0.384 Sum_probs=138.2
Q ss_pred EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881 18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK 97 (222)
Q Consensus 18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (222)
.++.+| .+.|.+++|+|++++|++|+.||+|++||..+.......... .. .+.. +.+.+.....+......
T Consensus 58 ~~l~gH---~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~--~~-~v~~---~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 58 RTLKGH---GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP--CT-WVMA---CAYAPSGCAIACGGLDN 128 (354)
T ss_dssp EEEECC---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SS-CCCE---EEECTTSSEEEEESTTS
T ss_pred EEecCC---CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC--CC-CEEE---EEECCCCCEEEEeeCCC
Confidence 355566 889999999999999999999999999998877655443211 11 0111 11222222222222333
Q ss_pred eeEeeeeeee-----ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcC--
Q psy16881 98 QIIPTRVGVY-----GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC-- 170 (222)
Q Consensus 98 ~~~~~~~~~~-----~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~-- 170 (222)
.+..+..... ......+..|...|.+++|+++++.+++++.|++|++||+++++++..+.+|...|.++.|+|
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 3333332111 112234567999999999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 171 DDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 171 ~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
++++|++|+.|++|++||+. ..++++++.|++|++||++..
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 57899999999999999974 357999999999999999843
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=7.3e-26 Score=184.71 Aligned_cols=183 Identities=22% Similarity=0.354 Sum_probs=138.0
Q ss_pred EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881 18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK 97 (222)
Q Consensus 18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (222)
.++.+| .+.|.+++|+|++++|++|+.||+|++||+.+......... +... +.. +.+.+.....+......
T Consensus 49 ~~l~gH---~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--~~~~-v~~---~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 49 RTLRGH---LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSW-VMT---CAYAPSGNYVACGGLDN 119 (340)
T ss_dssp EEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--SSSC-EEE---EEECTTSSEEEEEETTC
T ss_pred eeecCC---CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec--CCcc-EEE---EEECCCCCEEEEEeCCC
Confidence 355555 88999999999999999999999999999988776655422 1111 111 11222222223333333
Q ss_pred eeEeeeeeeec---cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE
Q psy16881 98 QIIPTRVGVYG---QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL 174 (222)
Q Consensus 98 ~~~~~~~~~~~---~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 174 (222)
.+..++..... .....+.+|...|.++.|++++ .+++++.|+.|++||+++++++..+.+|...|.+++|+|++++
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 44444321111 1112456799999999998866 4899999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 175 LASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 175 l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
|++|+.|++|++||+. ..++++++.|++|++||++.
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 9999999999999974 35799999999999999984
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=1.5e-25 Score=180.11 Aligned_cols=184 Identities=30% Similarity=0.498 Sum_probs=141.9
Q ss_pred eEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881 17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV 96 (222)
Q Consensus 17 ~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (222)
..++.+| .+.|.+++|+|++++|++|+.||+|++|+..++....... ++... +.. +.+.+.....+.....
T Consensus 16 ~~~~~gh---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 16 KFTLAGH---TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLG-ISD---VAWSSDSNLLVSASDD 86 (312)
T ss_dssp EEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSC-EEE---EEECTTSSEEEEEETT
T ss_pred EEEEccc---CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--cCCCc-eEE---EEEcCCCCEEEEECCC
Confidence 3345555 7889999999999999999999999999998877665542 22221 111 1222222223333333
Q ss_pred eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881 97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176 (222)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 176 (222)
..+..|+... ......+.+|...|.+++|+|+++++++|+.|+.|++||+++++++..+..|...|.+++|+|++++|+
T Consensus 87 ~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 87 KTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp SEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 3455554321 112234567899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 177 SGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 177 s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+++.|+.|++||+. ..++++++.|+.|++||++.
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999984 35799999999999999974
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.95 E-value=1.1e-25 Score=180.96 Aligned_cols=179 Identities=23% Similarity=0.324 Sum_probs=134.1
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
+...|.+++|+|++++|++|+.|++|++||+.+++.+..+. +|... +.. +.+.+.....+.+.....+..|+..
T Consensus 54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~~l~sgs~D~~v~lWd~~ 127 (304)
T 2ynn_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDY-IRS---IAVHPTKPYVLSGSDDLTVKLWNWE 127 (304)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECSSSSEEEEEETTSCEEEEEGG
T ss_pred cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe--CCCCc-EEE---EEEcCCCCEEEEECCCCeEEEEECC
Confidence 47889999999999999999999999999999888776652 23221 111 2222333333333344455556532
Q ss_pred eeccCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcC--CCCEEEEeeCC
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSC--DDSLLASGSND 181 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~--~~~~l~s~s~D 181 (222)
........+.+|...|.+++|+| ++.++++|+.|++|++||+++......+ .+|...|..+.|+| ++++|++++.|
T Consensus 128 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 11112234667999999999998 5689999999999999999877665544 35667899999986 77899999999
Q ss_pred CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++|++||+. ..+|++++.|++|++||+++
T Consensus 208 ~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999984 35799999999999999973
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.95 E-value=7.9e-26 Score=189.18 Aligned_cols=177 Identities=24% Similarity=0.421 Sum_probs=134.6
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|.+++|+|++++|++|+.|++|++||+.++..+..+. +|... +.. +...+.....+.......+..|+..
T Consensus 191 h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--~h~~~-v~~---~~~~~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--GHREW-VRM---VRPNQDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--CCCcc-EEE---EEECCCCCEEEEEcCCCeEEEEECC
Confidence 36789999999999999999999999999999888776552 22211 111 1111122222222333345555431
Q ss_pred eeccCCccccccCCCEEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHK--------------------SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTC 165 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~--------------------~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~ 165 (222)
. ......+.+|...|.+++|+|+ +.++++|+.|+.|++||+++++++..+.+|...|.+
T Consensus 265 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~ 343 (410)
T 1vyh_C 265 T-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 343 (410)
T ss_dssp T-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred C-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEE
Confidence 1 1112245678999999999986 678999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 166 CTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 166 ~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
++|+|++++|++++.|++|++||+. ..++++|+.|++|++|+++
T Consensus 344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999974 3579999999999999975
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=183.59 Aligned_cols=181 Identities=29% Similarity=0.409 Sum_probs=134.0
Q ss_pred eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee-ccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET-NDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
|..+.|.+++|+|+|++||+|+.|++|+||++.+....... ...+|... +.. +.+.+.....+.+.....+..|+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~-v~~---~~~sp~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT-VRK---VAWSPCGNYLASASFDATTCIWK 89 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSC-EEE---EEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCc-EEE---EEECCCCCEEEEEECCCcEEEEE
Confidence 34448999999999999999999999999998876533221 11233221 221 22233333333333344455554
Q ss_pred eeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881 104 VGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL---TCIKTLESHTRYVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 104 ~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~~V~~~~~s~~~~~l~s~s 179 (222)
..... .....+.+|...|.+++|+|++++|++|+.|+.|++||+++. +++..+.+|...|.+++|+|++++|++++
T Consensus 90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 169 (345)
T 3fm0_A 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169 (345)
T ss_dssp ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE
T ss_pred ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe
Confidence 32111 112356689999999999999999999999999999999765 34667889999999999999999999999
Q ss_pred CCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 180 NDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 180 ~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
.|++|++||+. ..+|++++.|++|++||..
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 99999999862 3579999999999999963
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.94 E-value=3.3e-25 Score=179.44 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=120.0
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|.+++|+|+|++|++|+.|++|++||+.+++....+. +|.... .. +.+.+.....+.......+..|+..
T Consensus 64 h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~h~~~v-~~---~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--GHKSDV-MS---VDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCE-EE---EEECTTSCEEEEEETTSCEEEEETT
T ss_pred CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc--cCCCcE-EE---EEEcCCCCEEEEEeCCCeEEEEECC
Confidence 47889999999999999999999999999999888776552 332221 11 1122222222333333445555431
Q ss_pred eeccCCccccccCCCEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHK------SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~------~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s 179 (222)
......+.+|...|.++.+.|. +..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++
T Consensus 138 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 138 --GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp --SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred --CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence 1222345678999999999885 34899999999999999999999899999999999999999999999999
Q ss_pred CCCeEEEEeCC
Q psy16881 180 NDKTVTIWDML 190 (222)
Q Consensus 180 ~D~~i~lwd~~ 190 (222)
.|++|++||+.
T Consensus 216 ~dg~i~iwd~~ 226 (319)
T 3frx_A 216 KDGEIMLWNLA 226 (319)
T ss_dssp TTCEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 99999999984
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.94 E-value=2.4e-25 Score=195.09 Aligned_cols=176 Identities=22% Similarity=0.339 Sum_probs=132.7
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCce--EEeeccCCCcceeeccceecCccCCcccceeeeee----eee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSL--IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV----KQI 99 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 99 (222)
|.+.|.+++|+|+|++||+|+.||+|+|||+.+.+. .... .++.. .+.. +.+.+.....+..... ..+
T Consensus 58 h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~--~~~~~-~v~~---v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI--PVFSG-PVKD---ISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE--ECSSS-CEEE---EEECTTSCEEEEEECCSSCSEEE
T ss_pred CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee--cccCC-ceEE---EEECCCCCEEEEEECCCCceeEE
Confidence 378899999999999999999999999999865432 2222 12221 1211 2222322222221111 123
Q ss_pred EeeeeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881 100 IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG 178 (222)
Q Consensus 100 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~ 178 (222)
..|+. +.....+.+|...|.+++|+|++. .+++|+.|++|++||.+++++...+.+|...|.+++|+|++++|+++
T Consensus 132 ~~wd~---~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 132 FLFDT---GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EETTT---CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEeeC---CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 33332 222345678999999999999986 69999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCC------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 179 SNDKTVTIWDML------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 179 s~D~~i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+.|++|++||+. ..+|++++.|++|++||+++
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 999999999952 24799999999999999973
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.94 E-value=7.6e-25 Score=178.69 Aligned_cols=177 Identities=25% Similarity=0.365 Sum_probs=132.8
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc----eEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS----LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP 101 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (222)
+...|.+++|+|++++|++|+.|+.|++|++.+.. ..... .+|... +.... +... ...+.+.....+..
T Consensus 96 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~h~~~-v~~~~---~~~~-~~l~s~s~d~~i~~ 168 (340)
T 1got_B 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL--AGHTGY-LSCCR---FLDD-NQIVTSSGDTTCAL 168 (340)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE--ECCSSC-EEEEE---EEET-TEEEEEETTSCEEE
T ss_pred CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe--cCCCcc-EEEEE---ECCC-CcEEEEECCCcEEE
Confidence 47789999999999999999999999999987643 11111 122111 11100 0001 11222222333444
Q ss_pred eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881 102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND 181 (222)
Q Consensus 102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D 181 (222)
|+.. .......+.+|...|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|
T Consensus 169 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 169 WDIE-TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp EETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EECC-CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 4421 111223456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 182 KTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 182 ~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++|++||+. ..++++|+.|+.|++||+..
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 999999974 35799999999999999863
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=3.5e-25 Score=181.54 Aligned_cols=141 Identities=21% Similarity=0.380 Sum_probs=118.9
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
.+.|.+++|+|++ .|++|+.||+|+|||+.+++......
T Consensus 82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~---------------------------------------- 120 (344)
T 4gqb_B 82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSK---------------------------------------- 120 (344)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEE----------------------------------------
T ss_pred CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEee----------------------------------------
Confidence 4679999999985 67799999999999987654322110
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCCCeEE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSNDKTVT 185 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~ 185 (222)
....+|...|++++|+|++++|++|+.|++|++||+++++++..+.+|...|.+++|++++ .+|++++.|++|+
T Consensus 121 -----~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~ 195 (344)
T 4gqb_B 121 -----FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRIL 195 (344)
T ss_dssp -----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred -----ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccc
Confidence 0123589999999999999999999999999999999999999999999999999999988 4789999999999
Q ss_pred EEeCC--------------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 186 IWDML--------------------------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 186 lwd~~--------------------------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
+||+. ..++++|+.|++|++||++ +++.
T Consensus 196 iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~ 250 (344)
T 4gqb_B 196 LWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV 250 (344)
T ss_dssp EEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred cccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence 99984 2478999999999999998 4443
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=7.5e-25 Score=180.15 Aligned_cols=179 Identities=20% Similarity=0.215 Sum_probs=133.7
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccce-eeeeeeeeEeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRV-FSTFVKQIIPTRV 104 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 104 (222)
|.+.|.+++|+|+|++|++|+.||+|++||+.++..+..+. +|... +.. +.+.......+ .......+..|+.
T Consensus 138 h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~--~h~~~-v~~---v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN--AHSSE-VNC---VAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSC-EEE---EEECTTCSSCEEEEETTSCEEECCT
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--CCCCC-EEE---EEEccCCCceeeeeccCCceEEEEC
Confidence 47889999999999999999999999999999888776653 22221 111 11222222222 2222334555543
Q ss_pred eeecc-CCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCC
Q psy16881 105 GVYGQ-DSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSND 181 (222)
Q Consensus 105 ~~~~~-~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D 181 (222)
..... .......|...+.+++|+|++ +++++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++.|
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence 21111 111233467789999999975 689999999999999999999999999999999999999987 679999999
Q ss_pred CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++|++||+. ..+|++++.|++|++||+..
T Consensus 292 ~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 292 CTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 999999974 35799999999999999964
No 17
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=3.8e-25 Score=183.16 Aligned_cols=183 Identities=21% Similarity=0.349 Sum_probs=137.2
Q ss_pred EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ 98 (222)
Q Consensus 19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (222)
++.+| .+.|.+++|+|++++|++|+.||+|++||+.++....... .+... +.. +.+.+.....+.......
T Consensus 61 ~l~gH---~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~-v~~---~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 61 TLQGH---SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPW-VME---CAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp EECCC---SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTT-CCC---CEECTTSSEEEECCSSSC
T ss_pred ccccc---ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCC-EEE---EEECCCCCEEEEeeCCCc
Confidence 34555 8899999999999999999999999999998877665542 22211 111 122222222333333334
Q ss_pred eEeeeeeee------ccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEe-----ccCCccEEEE
Q psy16881 99 IIPTRVGVY------GQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTL-----ESHTRYVTCC 166 (222)
Q Consensus 99 ~~~~~~~~~------~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~-----~~~~~~V~~~ 166 (222)
+..|+.... ......+.+|...|.++.|.|++ ..+++|+.|++|++||+++++++..+ .+|...|.++
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 444443211 11223567899999999999875 57999999999999999999888777 6789999999
Q ss_pred EEcC-CCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 167 TFSC-DDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 167 ~~s~-~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+|++ ++++|++|+.|++|++||+. ..++++++.|++|++||+++
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 9976 88999999999999999974 35799999999999999984
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.94 E-value=6.4e-25 Score=177.73 Aligned_cols=142 Identities=24% Similarity=0.410 Sum_probs=120.8
Q ss_pred eeccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 25 HIGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 25 ~~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
.|.+.|.+++|+|++ ++|++|+.|++|++|++.......
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------------------------------------- 54 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------------------------------------- 54 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE----------------------------------------
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc----------------------------------------
Confidence 348889999999965 899999999999999864211000
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT 183 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~ 183 (222)
......+.+|...|.+++|+++++++++|+.|++|++||+++++++..+.+|...|.+++|+|++.+|++++.|++
T Consensus 55 ----~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 130 (319)
T 3frx_A 55 ----GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130 (319)
T ss_dssp ----EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSC
T ss_pred ----cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 0000123579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881 184 VTIWDMLA----------------------------TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 184 i~lwd~~~----------------------------~~l~s~~~d~~i~iwd~~~ 210 (222)
|++||+.. ..+++++.|+.|++||++.
T Consensus 131 i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 185 (319)
T 3frx_A 131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185 (319)
T ss_dssp EEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred EEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence 99999741 2689999999999999974
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-24 Score=176.52 Aligned_cols=183 Identities=26% Similarity=0.370 Sum_probs=128.6
Q ss_pred EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV 96 (222)
Q Consensus 19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (222)
++.+| .+.|.+++|+|+ +|++|+.|++|++|++.... ........+|... +.. +.+.+.....+.....
T Consensus 9 ~~~~h---~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~-v~~---v~~sp~~~~las~s~D 79 (330)
T 2hes_X 9 SLKLY---KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA-IRS---VAWRPHTSLLAAGSFD 79 (330)
T ss_dssp EEECC---SSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSC-EEE---EEECTTSSEEEEEETT
T ss_pred eeccC---CCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCC-EEE---EEECCCCCEEEEEeCC
Confidence 34455 888999999987 99999999999999997642 2322211113221 221 2222222223333334
Q ss_pred eeeEeeeeeee------ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceEEEeccCCccEEEE
Q psy16881 97 KQIIPTRVGVY------GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS----LTCIKTLESHTRYVTCC 166 (222)
Q Consensus 97 ~~~~~~~~~~~------~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~----~~~~~~~~~~~~~V~~~ 166 (222)
..+..|+.... ......+.+|...|.+++|+|++++|++|+.|++|++||+++ .+++..+.+|...|.++
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 44555543210 011234568999999999999999999999999999999943 25677888999999999
Q ss_pred EEcCCCCEEEEeeCCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 167 TFSCDDSLLASGSNDKTVTIWDML---------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 167 ~~s~~~~~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+|+|++.+|++++.|++|++||+. ...+++++.|++|++||++.
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 999999999999999999999852 23689999999999999863
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=178.13 Aligned_cols=179 Identities=26% Similarity=0.353 Sum_probs=133.7
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCce--EEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSL--IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
|...|.+++|+|+|++|++|+.|++|++|++..... ...+ .+|... +.. +.+.+.....+.......+..|+
T Consensus 60 h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~--~~h~~~-v~~---v~~sp~~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL--EGHENE-VKS---VAWAPSGNLLATCSRDKSVWVWE 133 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE--CCCSSC-EEE---EEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc--cCCCCC-ceE---EEEeCCCCEEEEEECCCeEEEEE
Confidence 477899999999999999999999999999876543 2222 233322 111 22223333333333444555555
Q ss_pred eeeec--cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881 104 VGVYG--QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 104 ~~~~~--~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~~~~~l~s~s 179 (222)
..... .....+.+|...|.+++|+|++++|++|+.|+.|++||.++++ +...+.+|...|.+++|+|++++|++++
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 32111 1123456799999999999999999999999999999998764 4578899999999999999999999999
Q ss_pred CCCeEEEEeCC---------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 180 NDKTVTIWDML---------------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 180 ~D~~i~lwd~~---------------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
.|++|++||.. ...+++++.|+.|++|+.+.
T Consensus 214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 99999999851 24689999999999999863
No 21
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=1.4e-24 Score=173.88 Aligned_cols=178 Identities=24% Similarity=0.338 Sum_probs=127.7
Q ss_pred eccceEEEEEcCC--CCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCC--cccceeeeeeeee
Q psy16881 26 IGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQI 99 (222)
Q Consensus 26 ~~~~v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 99 (222)
|.+.|.+++|+|+ +++|++|+.||+|++||+.++. ..... .+|... +.. +.+.+. ....+.+.....+
T Consensus 52 H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~--~~h~~~-v~~---v~~~p~~~g~~l~s~s~d~~v 125 (297)
T 2pm7_B 52 HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH--AVHSAS-VNS---VQWAPHEYGPMLLVASSDGKV 125 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE--CCCSSC-EEE---EEECCGGGCSEEEEEETTSEE
T ss_pred ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe--ecCCCc-eeE---EEeCcCCCCcEEEEEECCCcE
Confidence 3788999999864 8999999999999999998653 22222 122111 111 111111 1112222333344
Q ss_pred Eeeeeeeec-cCCccccccCCCEEEEEEcCC-------------CCEEEEEeCCCcEEEEeCCCCc----eEEEeccCCc
Q psy16881 100 IPTRVGVYG-QDSETVGRHTSAVTSVRFNHK-------------SSLLVSGSVDKTVKLWDVPSLT----CIKTLESHTR 161 (222)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~h~~~i~~l~~~~~-------------~~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~ 161 (222)
..++..... .....+.+|...|.+++|+|+ +++|++|+.|++|++||+++++ +...+.+|..
T Consensus 126 ~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp EEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred EEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 455432111 112345679999999999986 4799999999999999997755 5677889999
Q ss_pred cEEEEEEcCCC---CEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 162 YVTCCTFSCDD---SLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 162 ~V~~~~~s~~~---~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
.|.+++|+|++ ++|++++.|++|++||+. ..+||+++.|++|+||+.+
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999999984 899999999999999863 2468999999999999976
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.93 E-value=4.8e-24 Score=171.31 Aligned_cols=178 Identities=28% Similarity=0.453 Sum_probs=133.6
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|.+++|+|++++|++|+.||+|++||+.+...+.... ++... +.. +.+.+.....+.......+..|+..
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~-v~~---~~~~~~~~~l~s~~~d~~i~iwd~~ 137 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNY-VFC---CNFNPQSNLIVSGSFDESVRIWDVK 137 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc--CCCCC-EEE---EEEcCCCCEEEEEeCCCcEEEEECC
Confidence 36789999999999999999999999999999887766552 22211 111 1111222222223333344455431
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCCTFSCDDSLLASGSNDKTV 184 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V~~~~~s~~~~~l~s~s~D~~i 184 (222)
. ......+..|...|.+++|+++++++++++.||.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|
T Consensus 138 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 138 T-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp T-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred C-CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 1 11223455688999999999999999999999999999999988877654 456679999999999999999999999
Q ss_pred EEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 185 TIWDML--------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 185 ~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++||+. ..++++++.|+.|++||++.
T Consensus 217 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 999984 24689999999999999983
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=9.6e-25 Score=178.18 Aligned_cols=145 Identities=22% Similarity=0.402 Sum_probs=121.7
Q ss_pred eccceEEEEE-----cC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeee
Q psy16881 26 IGSNMRCVRF-----SP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI 99 (222)
Q Consensus 26 ~~~~v~~l~~-----sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (222)
|.+.|.+++| ++ ++++|++|+.|++|++|++.+...... .
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------~---------------------------- 65 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------F---------------------------- 65 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------S----------------------------
T ss_pred chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------c----------------------------
Confidence 3888999999 76 999999999999999999763211000 0
Q ss_pred EeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881 100 IPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 100 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s 179 (222)
......+.+|...|.+++|+|++.++++|+.|++|++||+++++++..+.+|...|.+++|+|++++|++++
T Consensus 66 --------~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 137 (343)
T 2xzm_R 66 --------GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG 137 (343)
T ss_dssp --------EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE
T ss_pred --------ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc
Confidence 000012356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCC-----------------------------------CeEEEeeCCCcEEEEeCCCCc
Q psy16881 180 NDKTVTIWDMLA-----------------------------------TLLASGSNDKTVTIWDMRGNL 212 (222)
Q Consensus 180 ~D~~i~lwd~~~-----------------------------------~~l~s~~~d~~i~iwd~~~~~ 212 (222)
.|++|++||+.. .++++++.|+.|++||.+...
T Consensus 138 ~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 205 (343)
T 2xzm_R 138 AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI 205 (343)
T ss_dssp TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE
T ss_pred CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce
Confidence 999999999731 479999999999999976443
No 24
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=7.1e-24 Score=173.03 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=130.8
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|.+++|+|++++|++|+.|++|++||+.+++....+. +|... +.. +.+.+.....+.......+..|+..
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~h~~~-v~~---v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSE-VYS---VAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE--CCCSC-EEE---EEECSSTTEEEEEETTSCEEEEESS
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCCCc-EEE---EEECCCCCEEEEEcCCCEEEEEecc
Confidence 47889999999999999999999999999999887766552 23222 111 2222333333333344455555532
Q ss_pred ee-ccCCccccccCCCEEEEEEcCCC----------CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCE
Q psy16881 106 VY-GQDSETVGRHTSAVTSVRFNHKS----------SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSL 174 (222)
Q Consensus 106 ~~-~~~~~~~~~h~~~i~~l~~~~~~----------~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 174 (222)
.. .........|...|.+++|+|++ .++++++.|+.|++||. +.+....+.+|...|.+++|+|++++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCE
Confidence 10 00111223688999999999987 78999999999999994 46677788899999999999999999
Q ss_pred EEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 175 LASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 175 l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
|++++.|++|++||+. ...+++++.|+.|++||+.+
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMT 285 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred EEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 9999999999999983 11244566788999999873
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-24 Score=176.98 Aligned_cols=179 Identities=26% Similarity=0.394 Sum_probs=130.4
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC-------ceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL-------SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ 98 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (222)
|...|.+++|+|++++|++|+.|++|++|++... .....+ .+|... +.. +.+.+.....+.......
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~-V~~---v~~sp~g~~las~s~D~~ 130 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII--EGHENE-VKG---VAWSNDGYYLATCSRDKS 130 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE--C----C-EEE---EEECTTSCEEEEEETTSC
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE--cCCCCc-EEE---EEECCCCCEEEEEeCCCE
Confidence 4778999999999999999999999999998532 122222 222221 111 222233333333334445
Q ss_pred eEeeeeeeec---cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcCC--
Q psy16881 99 IIPTRVGVYG---QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCD-- 171 (222)
Q Consensus 99 ~~~~~~~~~~---~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~-- 171 (222)
+..|+..... .....+.+|...|.+++|+|++++|++|+.|++|++||..++ +++..+.+|...|.+++|+|+
T Consensus 131 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp EEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred EEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence 5566542111 112345679999999999999999999999999999998765 678889999999999999998
Q ss_pred CCEEEEeeCCCeEEEEeCC-------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 172 DSLLASGSNDKTVTIWDML-------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 172 ~~~l~s~s~D~~i~lwd~~-------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+.+|++++.|++|++||+. ..++++++.|++|++||...
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 7799999999999999862 13589999999999999863
No 26
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=1.3e-24 Score=174.13 Aligned_cols=137 Identities=20% Similarity=0.299 Sum_probs=115.8
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
.+.|++++|+|+|++||+|+.|++|++|++.+....
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-------------------------------------------- 44 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-------------------------------------------- 44 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC--------------------------------------------
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE--------------------------------------------
Confidence 788999999999999999999999999997531100
Q ss_pred eccCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEeeC
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSCD--DSLLASGSN 180 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~~--~~~l~s~s~ 180 (222)
....+.+|...|.+++|++. +++|++|+.|++|+|||+++++ .+..+.+|...|.+++|+|+ +.+|++++.
T Consensus 45 ---~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 45 ---LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp ---CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ---EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC
Confidence 00123469999999999753 7899999999999999998763 56677889999999999997 899999999
Q ss_pred CCeEEEEeCCC--------------------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881 181 DKTVTIWDMLA--------------------------------------TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 181 D~~i~lwd~~~--------------------------------------~~l~s~~~d~~i~iwd~~~ 210 (222)
|++|++||+.. .+|++|+.|++|++||++.
T Consensus 122 d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~ 189 (297)
T 2pm7_B 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (297)
T ss_dssp TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence 99999999741 2799999999999999873
No 27
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=1.1e-23 Score=172.90 Aligned_cols=175 Identities=26% Similarity=0.377 Sum_probs=131.5
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeEeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 103 (222)
|.+.|.+++|+|+++.|++++.|++|++||+.++..+..+. +|... +.. +.+.+. ....+.......+..|+
T Consensus 153 h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~g~~l~sgs~Dg~v~~wd 226 (354)
T 2pbi_B 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--GHGAD-VLC---LDLAPSETGNTFVSGGCDKKAMVWD 226 (354)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECCCSSCCEEEEEETTSCEEEEE
T ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCC-eEE---EEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 37889999999999999999999999999999888776652 22221 111 111111 11222233334455554
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--CccEEEEEEcCCCCEEEEeeCC
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--TRYVTCCTFSCDDSLLASGSND 181 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~V~~~~~s~~~~~l~s~s~D 181 (222)
... ......+..|...|++++|+|+++++++|+.|++|++||+++.+.+..+..+ ...+.+++|+|++++|++++.|
T Consensus 227 ~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 305 (354)
T 2pbi_B 227 MRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305 (354)
T ss_dssp TTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence 321 1122345679999999999999999999999999999999988777666543 3468999999999999999999
Q ss_pred CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEe
Q psy16881 182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWD 207 (222)
Q Consensus 182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd 207 (222)
++|++||+. +.+|++|+.|++|++|+
T Consensus 306 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999973 35799999999999996
No 28
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.93 E-value=1.7e-24 Score=178.07 Aligned_cols=181 Identities=16% Similarity=0.245 Sum_probs=128.4
Q ss_pred eeccceEEEEEcCCCCeEEEecC------CCeEEEEeCCCCceEEeecc--CCCcceeeccceecCccCCcccceeeeee
Q psy16881 25 HIGSNMRCVRFSPDTRLLATGGD------DETVTVWRSDDLSLIMETND--RGHTQGRIEGWGRVPACPLCRTRVFSTFV 96 (222)
Q Consensus 25 ~~~~~v~~l~~spdg~~l~tgs~------Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (222)
.|...|.+++|||||++||+|+. |++|++|+..++........ .++... +.. +.+.+.. ..+.+...
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~-V~~---~~~s~d~-~~l~~s~d 114 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG-VTD---VAWVSEK-GILVASDS 114 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC-EEE---EEEETTT-EEEEEETT
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC-EEE---EEEcCCC-CEEEEECC
Confidence 35788999999999999999997 78899998776543211100 011111 111 1122221 12222333
Q ss_pred eeeEeeeeeeecc---CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC
Q psy16881 97 KQIIPTRVGVYGQ---DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS 173 (222)
Q Consensus 97 ~~~~~~~~~~~~~---~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~ 173 (222)
..+..|++..... ......+|...|++++|+|++++|++|+.|+.|++||+++++++..+.+|...|++++|++++.
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 3455555322111 1112346899999999999999999999999999999999999999999999999999999874
Q ss_pred -EEEEeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 174 -LLASGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 174 -~l~s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++++++.|++|++||+. ..++++|+.|+.|++||++.
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence 78899999999999973 24789999999999999973
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.93 E-value=1.3e-24 Score=179.91 Aligned_cols=182 Identities=23% Similarity=0.343 Sum_probs=134.1
Q ss_pred eccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeecc---CCCcceeeccceecCccC-CcccceeeeeeeeeE
Q psy16881 26 IGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETND---RGHTQGRIEGWGRVPACP-LCRTRVFSTFVKQII 100 (222)
Q Consensus 26 ~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 100 (222)
|.+.|.++.|+|++ .+|++|+.|++|++||+.++..+..+.. .+|.... .. +.... .....+.......+.
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v-~~---~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV-LS---LSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE-EE---EEECSSSCCEEEEEETTSCEE
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe-EE---EEeecCCCCEEEEEECCCeEE
Confidence 36778899999974 5799999999999999998877655421 1222111 11 11111 111122233334555
Q ss_pred eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc-------cEEEEEEcCCCC
Q psy16881 101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR-------YVTCCTFSCDDS 173 (222)
Q Consensus 101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-------~V~~~~~s~~~~ 173 (222)
.|+..........+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+..+.. .|.+++|+|+|+
T Consensus 232 ~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp EEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred EEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence 5654322233445678999999999999999999999999999999999988877755432 388999999999
Q ss_pred EEEEeeCCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 174 LLASGSNDKTVTIWDML---------------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 174 ~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
+|++|+.|+.|++||+. +.+|++|+.|++|++|++++.
T Consensus 312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999962 357999999999999999853
No 30
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=3.8e-24 Score=176.51 Aligned_cols=176 Identities=16% Similarity=0.166 Sum_probs=125.4
Q ss_pred cceEEEEEcCCCCeEE--EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 28 SNMRCVRFSPDTRLLA--TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~--tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
..+++++|||||++|+ +++.|++|+|||+.+.....+..... .+.. +.++++........ .+.+..+...
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~----~V~~---v~fspdg~~l~s~s-~~~~~~~~~~ 205 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG----EVKD---LHFSTDGKVVAYIT-GSSLEVISTV 205 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS----CCCE---EEECTTSSEEEEEC-SSCEEEEETT
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC----ceEE---EEEccCCceEEecc-ceeEEEEEec
Confidence 3488999999999876 45579999999999988776653211 1211 22333333222222 2222222211
Q ss_pred eecc-CCccccccCCCEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCce----EEEeccCCccEEEEEEcCCCCEEE
Q psy16881 106 VYGQ-DSETVGRHTSAVTSVRFNHKSSLLVSGSVDK----TVKLWDVPSLTC----IKTLESHTRYVTCCTFSCDDSLLA 176 (222)
Q Consensus 106 ~~~~-~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg----~I~iwd~~~~~~----~~~~~~~~~~V~~~~~s~~~~~l~ 176 (222)
.... .......|...|.+++|+|+++++++++.|+ .+++||+..... ...+.+|...|++++|+|+|++||
T Consensus 206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV 285 (365)
T ss_dssp TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence 0000 0112345788899999999999999999887 688899876543 346778999999999999999999
Q ss_pred EeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 177 SGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 177 s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
+|+.|++|+|||+. +.+|||+|.|++|+|||+..+
T Consensus 286 sgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 286 LASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999984 468999999999999998643
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.93 E-value=1.3e-23 Score=174.66 Aligned_cols=173 Identities=29% Similarity=0.503 Sum_probs=130.0
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881 29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG 108 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (222)
.|++++|+|+|++|++|+.|++|++||+.+.+....+ .+|... +.. +.+.+.....+.......+..|+... .
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~-v~~---~~~~p~~~~l~s~s~d~~v~iwd~~~-~ 197 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QGHEQD-IYS---LDYFPSGDKLVSGSGDRTVRIWDLRT-G 197 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSC-EEE---EEECTTSSEEEEEETTSEEEEEETTT-T
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--ccCCCC-EEE---EEEcCCCCEEEEecCCCcEEEEECCC-C
Confidence 4899999999999999999999999999988776655 233322 111 12222222233333344455554311 0
Q ss_pred cCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEe-------ccCCccEEEEEEcCCCCEEEEeeC
Q psy16881 109 QDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL-------ESHTRYVTCCTFSCDDSLLASGSN 180 (222)
Q Consensus 109 ~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~-------~~~~~~V~~~~~s~~~~~l~s~s~ 180 (222)
.....+ .+...+.+++++| +++++++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.
T Consensus 198 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 198 QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eeEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 111112 3567799999998 7899999999999999999998877666 578899999999999999999999
Q ss_pred CCeEEEEeCC-----------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 181 DKTVTIWDML-----------------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 181 D~~i~lwd~~-----------------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
|++|++||+. ..++++++.|+.|++||++
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 9999999973 2469999999999999997
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.92 E-value=1.1e-23 Score=182.13 Aligned_cols=172 Identities=35% Similarity=0.508 Sum_probs=129.9
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|++++|+|+|++|++++.|++|++|+.. ++...... ++... +.. +.+.+.....+.......+..|+.
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~--~~~~~-v~~---~~~s~d~~~l~~~~~d~~v~~w~~- 455 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSS-VWG---VAFSPDDQTIASASDDKTVKLWNR- 455 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE--CCSSC-EEE---EEECTTSSEEEEEETTSEEEEEET-
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec--CCCCC-eEE---EEECCCCCEEEEEcCCCEEEEEEC-
Confidence 47889999999999999999999999999964 34433331 22211 111 122222332222233333444431
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
.......+.+|...|.+++|+|+++++++++.|+.|++||. +++++..+.+|...|++++|+|++++|++++.|+.|+
T Consensus 456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEE
Confidence 11222345679999999999999999999999999999995 5788899999999999999999999999999999999
Q ss_pred EEeCC----------------------CCeEEEeeCCCcEEEEe
Q psy16881 186 IWDML----------------------ATLLASGSNDKTVTIWD 207 (222)
Q Consensus 186 lwd~~----------------------~~~l~s~~~d~~i~iwd 207 (222)
+||.. ..+|++++.|++|++||
T Consensus 534 lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 534 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99963 35799999999999997
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.92 E-value=2.1e-23 Score=173.36 Aligned_cols=153 Identities=29% Similarity=0.532 Sum_probs=121.5
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|.+++|+|||++||+|+ |+++++|++.++..+...... ...... . .
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~--~~~~~~------------------------~---~ 112 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD--SAANKD------------------------P---E 112 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCc--cccccc------------------------c---c
Confidence 478899999999999999987 689999999887766544211 000000 0 0
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
.........+...|.+++|+|+++++++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|+
T Consensus 113 --~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~ 190 (393)
T 1erj_A 113 --NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190 (393)
T ss_dssp ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred --cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEE
Confidence 000000112345699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 186 IWDML-----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 186 lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+||+. ..++++++.|+.|++||+++
T Consensus 191 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred EEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 99974 35799999999999999974
No 34
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=1.2e-24 Score=175.83 Aligned_cols=138 Identities=20% Similarity=0.295 Sum_probs=115.2
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|.+++|+|+|++||+|+.|++|++||+.++.....
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~----------------------------------------- 50 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI----------------------------------------- 50 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-----------------------------------------
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-----------------------------------------
Confidence 378899999999999999999999999999754321000
Q ss_pred eeccCCccccccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcCC--CCEEEEee
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNH--KSSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCD--DSLLASGS 179 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~--~~~l~s~s 179 (222)
..+.+|...|.+++|++ ++++|++|+.|++|++||++++ +.+..+.+|...|.+++|+|+ +.+|++++
T Consensus 51 ------~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs 124 (316)
T 3bg1_A 51 ------ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS 124 (316)
T ss_dssp ------EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEEC
T ss_pred ------EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEc
Confidence 01346999999999975 4789999999999999999876 456778899999999999998 78999999
Q ss_pred CCCeEEEEeCCC-------------------------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881 180 NDKTVTIWDMLA-------------------------------------------TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 180 ~D~~i~lwd~~~-------------------------------------------~~l~s~~~d~~i~iwd~~~ 210 (222)
.|++|++||+.. .+|++|+.|++|++||++.
T Consensus 125 ~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 125 SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred CCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence 999999998631 3689999999999999973
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.92 E-value=1.5e-23 Score=181.28 Aligned_cols=118 Identities=38% Similarity=0.578 Sum_probs=103.6
Q ss_pred EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881 18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK 97 (222)
Q Consensus 18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (222)
.+|.+| .+.|++++|||||++||+|+.|++|+|||.. ++.+.
T Consensus 10 ~~L~GH---~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~~~~---------------------------------- 51 (577)
T 2ymu_A 10 NRLEAH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ---------------------------------- 51 (577)
T ss_dssp EEECCC---SSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEE----------------------------------
T ss_pred eEECCC---CCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEE----------------------------------
Confidence 455666 8899999999999999999999999999853 22211
Q ss_pred eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 177 (222)
.+.+|...|++++|+|++++|++++.|+.|+|||. +++++..+.+|...|.+++|+|++++|++
T Consensus 52 ---------------~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 115 (577)
T 2ymu_A 52 ---------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 115 (577)
T ss_dssp ---------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEE
Confidence 12468999999999999999999999999999996 57788899999999999999999999999
Q ss_pred eeCCCeEEEEeC
Q psy16881 178 GSNDKTVTIWDM 189 (222)
Q Consensus 178 ~s~D~~i~lwd~ 189 (222)
++.|+.+++|+.
T Consensus 116 ~~~d~~~~~~~~ 127 (577)
T 2ymu_A 116 ASDDKTVKLWNR 127 (577)
T ss_dssp EETTSCEEEEET
T ss_pred EcCCCceeeccc
Confidence 999999999985
No 36
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=7.1e-24 Score=171.34 Aligned_cols=178 Identities=24% Similarity=0.303 Sum_probs=127.4
Q ss_pred eccceEEEEEcC--CCCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCC--cccceeeeeeeee
Q psy16881 26 IGSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQI 99 (222)
Q Consensus 26 ~~~~v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 99 (222)
|.+.|.+++|+| ++++|++|+.|++|++||+.++. ..... .+|... +.. +.+.+. ....+.......+
T Consensus 56 H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--~~h~~~-V~~---v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH--AGHDSS-VNS---VCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE--CCCSSC-CCE---EEECCTTTCSCEEEECSSSCE
T ss_pred CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc--cCCCCc-eEE---EEECCCCCCcEEEEEcCCCCE
Confidence 478899999986 48999999999999999998753 22222 222211 111 112222 1112222333344
Q ss_pred Eeeeeeeecc--CCccccccCCCEEEEEEcCC-----------------CCEEEEEeCCCcEEEEeCCCC---ceEEEec
Q psy16881 100 IPTRVGVYGQ--DSETVGRHTSAVTSVRFNHK-----------------SSLLVSGSVDKTVKLWDVPSL---TCIKTLE 157 (222)
Q Consensus 100 ~~~~~~~~~~--~~~~~~~h~~~i~~l~~~~~-----------------~~~l~sg~~dg~I~iwd~~~~---~~~~~~~ 157 (222)
..|+...... ....+.+|...|.+++|+|+ +++|++|+.|+.|++||++.. +++..+.
T Consensus 130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~ 209 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209 (316)
T ss_dssp EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence 4554321110 12345678899999999987 468999999999999999754 4667788
Q ss_pred cCCccEEEEEEcCCC----CEEEEeeCCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEE
Q psy16881 158 SHTRYVTCCTFSCDD----SLLASGSNDKTVTIWDML---------------------------ATLLASGSNDKTVTIW 206 (222)
Q Consensus 158 ~~~~~V~~~~~s~~~----~~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iw 206 (222)
+|...|.+++|+|++ .+|++++.|++|++||+. ..+||+++.|++|++|
T Consensus 210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 999999999999986 899999999999999863 2469999999999999
Q ss_pred eCC
Q psy16881 207 DMR 209 (222)
Q Consensus 207 d~~ 209 (222)
+..
T Consensus 290 ~~~ 292 (316)
T 3bg1_A 290 KES 292 (316)
T ss_dssp EEC
T ss_pred EEC
Confidence 976
No 37
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.92 E-value=4.3e-23 Score=183.03 Aligned_cols=180 Identities=27% Similarity=0.324 Sum_probs=133.9
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|.+++|+|+|++|++|+.||+|++||+.++.....+ .+|.... .. +.+.+.....+.......+..|+..
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~--~~h~~~v-~~---~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF--VGHTKDV-LS---VAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCE-EE---EEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE--eCCCCCE-EE---EEEeCCCCEEEEEeCCCEEEEEECC
Confidence 3788999999999999999999999999999988776655 2333221 11 2222233333333344445555421
Q ss_pred e--eccCCccccccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881 106 V--YGQDSETVGRHTSAVTSVRFNHKS--SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND 181 (222)
Q Consensus 106 ~--~~~~~~~~~~h~~~i~~l~~~~~~--~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D 181 (222)
. .........+|...|.+++|+|++ ..+++++.|+.|++||+++.++...+.+|...|.+++|+|++++|++++.|
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 0 000111234688999999999986 589999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCC---------------------CeEEEeeCCCcEEEEeCCCC
Q psy16881 182 KTVTIWDMLA---------------------TLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 182 ~~i~lwd~~~---------------------~~l~s~~~d~~i~iwd~~~~ 211 (222)
++|++||+.. ..+++++.++.|++||+++.
T Consensus 583 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~ 633 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK 633 (694)
T ss_dssp SBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred CeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC
Confidence 9999999841 22344455778999999843
No 38
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=3.1e-23 Score=171.02 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=111.0
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee----eeEe
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK----QIIP 101 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 101 (222)
+...|.+++|+|||++|++++.++ +.+|+..++..........+... +.. +.+.+............ .+..
T Consensus 175 ~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~-v~~---v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 175 TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWS-LSK---INFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEE-EEE---EEEEETTEEEEEEEESSSCCEEEEE
T ss_pred CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCC-EEE---EEEcCCCCEEEEEecCCcceeEEee
Confidence 457799999999999999998655 55666655555443322222211 111 11222222111111111 1222
Q ss_pred eeeee---eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEE
Q psy16881 102 TRVGV---YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 102 ~~~~~---~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s 177 (222)
++... .......+.+|...|++++|+|+|++|++|+.|++|+|||+++++++..+ .+|...|++++|||+|++|||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS 329 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS 329 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence 22110 01112245578899999999999999999999999999999999998875 789999999999999999999
Q ss_pred eeCCCeEEEEeCCC
Q psy16881 178 GSNDKTVTIWDMLA 191 (222)
Q Consensus 178 ~s~D~~i~lwd~~~ 191 (222)
+|.|++|+|||+..
T Consensus 330 ~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 330 VSAANTIHIIKLPL 343 (365)
T ss_dssp EETTSEEEEEECCT
T ss_pred EeCCCeEEEEEcCC
Confidence 99999999999964
No 39
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=6.6e-23 Score=164.90 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=111.0
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc----eEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeE
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS----LIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQII 100 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (222)
.+.|.+++|+|++++|++|+.||+|++|++.+.. ....+ .++... +.. +.+.+. ....+.......+.
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~-v~~---~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW--RAHDSS-IVA---IDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE--ECCSSC-EEE---EEECCGGGCSEEEEEETTSCEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee--ccCCCc-EEE---EEEcCCCCCCEEEEEcCCCeEE
Confidence 7889999999999999999999999999998653 22222 122211 111 112221 12222233334455
Q ss_pred eeeeeeec--------cCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCc-------------------
Q psy16881 101 PTRVGVYG--------QDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLT------------------- 151 (222)
Q Consensus 101 ~~~~~~~~--------~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~------------------- 151 (222)
.|+..... .....+..|...|.+++|+|+ ++++++++.||.|++||+++++
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 55532111 112345578999999999999 9999999999999999986543
Q ss_pred -----------------------------------------eEEEeccCCccEEEEEEcCCC----CEEEEeeCCCeEEE
Q psy16881 152 -----------------------------------------CIKTLESHTRYVTCCTFSCDD----SLLASGSNDKTVTI 186 (222)
Q Consensus 152 -----------------------------------------~~~~~~~~~~~V~~~~~s~~~----~~l~s~s~D~~i~l 186 (222)
.+..+.+|...|.+++|+|++ ++|++++.|+.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 144556788999999999998 89999999999999
Q ss_pred EeC
Q psy16881 187 WDM 189 (222)
Q Consensus 187 wd~ 189 (222)
||+
T Consensus 245 wd~ 247 (351)
T 3f3f_A 245 FKI 247 (351)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.91 E-value=1.4e-22 Score=167.00 Aligned_cols=177 Identities=16% Similarity=0.221 Sum_probs=131.6
Q ss_pred eccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCc-ccceeeeeeeeeEeee
Q psy16881 26 IGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC-RTRVFSTFVKQIIPTR 103 (222)
Q Consensus 26 ~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 103 (222)
|...|.+++|+|++ ++|++|+.||+|++|++.+..........++... +.. +.+.+.. ...+.......+..|+
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~-v~~---~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDA-ITG---MKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCB-EEE---EEEETTEEEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCc-eeE---EEeCCCCCCEEEEEeCCCEEEEEE
Confidence 37889999999999 8999999999999999997776655432233222 111 1112211 1122222233444444
Q ss_pred eeeeccCCccc---cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEee
Q psy16881 104 VGVYGQDSETV---GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGS 179 (222)
Q Consensus 104 ~~~~~~~~~~~---~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s 179 (222)
.. ......+ ..|...|.+++|+|+++++++|+.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|++++
T Consensus 148 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 148 FS--GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp TT--SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred CC--CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence 32 1111112 234578999999999999999999999999999 4778888999999999999999999 999999
Q ss_pred CCCeEEEEeCC---------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 180 NDKTVTIWDML---------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 180 ~D~~i~lwd~~---------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
.|+.|++||+. ..++++++.|+.|++||++
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 225 VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 99999999974 2479999999999999997
No 41
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=5.9e-24 Score=174.64 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=128.0
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC--ceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL--SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
.+.|.+++|+|+|++|++|+.||+|++|++.+. .....+ .+|... +.. +.+.+.....+.......+..|+.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~h~~~-v~~---~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF--SDHDKI-VTC---VDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB--CCCSSC-EEE---EEECTTTCCEEEEETTSSEEEC--
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE--ecCCce-EEE---EEEeCCCCEEEEEeCCCeEEEEEc
Confidence 578999999999999999999999999999876 333322 222221 111 122222222333333344555553
Q ss_pred eeec--cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEecc-CCccEEEEEEcCCCCEEEEe
Q psy16881 105 GVYG--QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT---CIKTLES-HTRYVTCCTFSCDDSLLASG 178 (222)
Q Consensus 105 ~~~~--~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~---~~~~~~~-~~~~V~~~~~s~~~~~l~s~ 178 (222)
.... .....+.+|...|.+++|+|++++|++++.|+.|++||+++++ +...+.. |...|.+++|+|++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 2211 1223455789999999999999999999999999999998876 4677777 99999999999999999999
Q ss_pred eCCCeEEEEeCC----------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 179 SNDKTVTIWDML----------------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 179 s~D~~i~lwd~~----------------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+.|++|++||+. ..++++++.|+.|++||++.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999962 34699999999999999984
No 42
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=3.6e-23 Score=174.03 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=127.0
Q ss_pred ccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccc-ceeeeeeeeeEeeee
Q psy16881 27 GSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT-RVFSTFVKQIIPTRV 104 (222)
Q Consensus 27 ~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 104 (222)
...|+||+|+| ++++||+|+.||+|+|||+.+..........+|... +.. +.+.+.... .+.+.....+..|+.
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~-V~~---l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS-ITG---LKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCC-CCE---EEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCC-EEE---EEEeCCCCCEEEEEeCCCEEEEeec
Confidence 67799999999 567999999999999999987654433332344322 221 222222222 222233344555543
Q ss_pred eeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEeeCCC
Q psy16881 105 GVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGSNDK 182 (222)
Q Consensus 105 ~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s~D~ 182 (222)
.... ........+...+.+++|++++++|++|+.||.|++||++. +.+..+.+|...|.+++|+|++. +|++++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence 1100 00001112345678899999999999999999999999874 55677889999999999999876 788999999
Q ss_pred eEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 183 TVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 183 ~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
.|++||+. ..+|++++.|+.|++||++.
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 99999973 35799999999999999973
No 43
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=3.1e-23 Score=174.43 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=112.3
Q ss_pred eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
|.+.|.+|+|+| ++++|++|+.||+|++||+++........... ....+... .+.+.....+.+.....+..|+.
T Consensus 163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT-INIWFCSL---DVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS-CSCCCCCE---EEETTTTEEEEECSSSBEEEEES
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC-CCccEEEE---EECCCCCEEEEEeCCCcEeeecc
Confidence 478899999998 68899999999999999997654332221111 11111111 11112222222333334555543
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEE---EeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIK---TLESHTRYVTCCTFSCDDSLLASGSN 180 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~---~~~~~~~~V~~~~~s~~~~~l~s~s~ 180 (222)
.+.....+.+|...|++++|+|+++ ++++|+.|+.|+|||+++.+... ...+|...|.+++|+|++++|++++.
T Consensus 239 --~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~ 316 (435)
T 4e54_B 239 --DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ 316 (435)
T ss_dssp --SSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred --CcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence 1233445678999999999999886 88999999999999998765432 33578999999999999999999999
Q ss_pred CCeEEEEeCC
Q psy16881 181 DKTVTIWDML 190 (222)
Q Consensus 181 D~~i~lwd~~ 190 (222)
|+.|++||+.
T Consensus 317 D~~i~iwd~~ 326 (435)
T 4e54_B 317 KSEIRVYSAS 326 (435)
T ss_dssp SSCEEEEESS
T ss_pred CCEEEEEECC
Confidence 9999999974
No 44
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.91 E-value=3.4e-22 Score=161.32 Aligned_cols=180 Identities=24% Similarity=0.284 Sum_probs=130.4
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|.+++|+|+|++|++|+.|+.|++|+................... ..........+.......+..++..
T Consensus 85 h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~s~s~d~~~~~~d~~ 158 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS------VAFSSDNRQIVSGSRDKTIKLWNTL 158 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------EEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeE------EEEeecCccceeecCCCeEEEEEeC
Confidence 3788999999999999999999999999999877655443221111100 0011111111222222233333321
Q ss_pred eeccCCccccccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKS--SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT 183 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~--~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~ 183 (222)
..........+|...+..++|++++ .++++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|+.
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 1111112345688999999998765 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCC---------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 184 VTIWDML---------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 184 i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
|++||+. ...+++++.|+.|++||+++.
T Consensus 239 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence 9999985 235777888999999999854
No 45
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.91 E-value=1.7e-22 Score=177.05 Aligned_cols=178 Identities=22% Similarity=0.286 Sum_probs=132.4
Q ss_pred eccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 26 IGSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 26 ~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
|...|.+++|+|+++ +|++|+.|++|++||..+.+....+ .+|... +.. +.+.+.....+.+.....+..|+.
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l--~~H~~~-V~~---v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--GEHTKF-VHS---VRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--CCCSSC-EEE---EEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee--ccccCc-eEE---EEECCCCCEEEEEECCCcEEEEEC
Confidence 478899999999997 5999999999999998877766554 333322 111 223333333333344445555542
Q ss_pred eeeccCCccc-------cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-----------------------
Q psy16881 105 GVYGQDSETV-------GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK----------------------- 154 (222)
Q Consensus 105 ~~~~~~~~~~-------~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~----------------------- 154 (222)
.. +.....+ .+|...|.+++|+|++++|++++.|++|++||+++++++.
T Consensus 220 ~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 220 VD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp TT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred CC-CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 11 0001111 2699999999999999999999999999999998776543
Q ss_pred --------------------EeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC-----------------------
Q psy16881 155 --------------------TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA----------------------- 191 (222)
Q Consensus 155 --------------------~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~----------------------- 191 (222)
.+.+|...|.+++|+|++++|++++.|++|++||+.+
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~ 378 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 378 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence 3357888999999999999999999999999999742
Q ss_pred CeEEEeeCCCcEEEEeCCC
Q psy16881 192 TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 192 ~~l~s~~~d~~i~iwd~~~ 210 (222)
..+++++.|+.+++|++.+
T Consensus 379 ~~l~s~s~d~~v~~w~~~~ 397 (611)
T 1nr0_A 379 GDLFTVSWDDHLKVVPAGG 397 (611)
T ss_dssp SCEEEEETTTEEEEECSSS
T ss_pred CcEEEEEcCCceEEeecCC
Confidence 3578999999999999874
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.91 E-value=7e-22 Score=158.96 Aligned_cols=182 Identities=20% Similarity=0.272 Sum_probs=134.1
Q ss_pred eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEE---eeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIM---ETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP 101 (222)
Q Consensus 25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (222)
.|.+.|.+++|+|++++|++++ ||+|++|++.+..... ......+. ..+.. +.+.+.....+.......+..
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD-NYIRS---CKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT-SBEEE---EEECTTSSEEEEEESSSEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC-CcEEE---EEEcCCCCEEEEEcCCCcEEE
Confidence 3478899999999999999998 9999999998654221 11111111 11111 112222222222333334444
Q ss_pred eeeeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881 102 TRVGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180 (222)
Q Consensus 102 ~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~ 180 (222)
++..... .....+..|...|.+++|+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 4432111 012345568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 181 DKTVTIWDML----------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 181 D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
|+.|++||+. ..++++++.|+.|++||++..
T Consensus 204 dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999984 357999999999999999854
No 47
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.7e-22 Score=163.87 Aligned_cols=178 Identities=19% Similarity=0.242 Sum_probs=130.0
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC--ceEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeEee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL--SLIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQIIPT 102 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 102 (222)
.+.|.+++|+|++++|++|+.||+|++|++... ...... .+|... +.. +.+... ....+.......+..|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~h~~~-v~~---~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL--TGHEGP-VWR---VDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSC-EEE---EEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe--cCCCCc-EEE---EEeCCCCCCCEEEEeccCCEEEEE
Confidence 788999999999999999999999999999743 333333 223221 111 111111 1122222333345555
Q ss_pred eeeeec-cCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcC-------
Q psy16881 103 RVGVYG-QDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSC------- 170 (222)
Q Consensus 103 ~~~~~~-~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~------- 170 (222)
+..... .....+..|...|.+++|+|+ ++++++++.|+.|++||+++.. ....+.+|...|.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 432111 122344568899999999999 8999999999999999998763 3456678999999999999
Q ss_pred ------CCCEEEEeeCCCeEEEEeCC------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 171 ------DDSLLASGSNDKTVTIWDML------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 171 ------~~~~l~s~s~D~~i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++.+|++++.|+.|++||+. ..++++++.|+.|++||++.
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999862 35799999999999999985
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.90 E-value=4e-22 Score=176.86 Aligned_cols=182 Identities=24% Similarity=0.400 Sum_probs=130.7
Q ss_pred EEeeeeeeccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCce-----EEeeccCCCcceeeccceecCccCCccccee
Q psy16881 19 ILRGSVHIGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSL-----IMETNDRGHTQGRIEGWGRVPACPLCRTRVF 92 (222)
Q Consensus 19 ~~~~~~~~~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (222)
.+++| .+.|++++|+|++ ++|++|+.|++|++|++.+... .... .+|.... .. +.+.+.....+.
T Consensus 377 ~l~~H---~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~--~~h~~~v-~~---v~~s~~g~~l~s 447 (694)
T 3dm0_A 377 TMRAH---TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL--TGHSHFV-ED---VVLSSDGQFALS 447 (694)
T ss_dssp EEECC---SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE--ECCSSCE-EE---EEECTTSSEEEE
T ss_pred hcccC---CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee--cCCCCcE-EE---EEECCCCCEEEE
Confidence 34455 8889999999875 7999999999999999875321 1111 2222211 11 222222333333
Q ss_pred eeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe---ccCCccEEEEEEc
Q psy16881 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYVTCCTFS 169 (222)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~V~~~~~s 169 (222)
......+..|+... ......+.+|...|.+++|+|+++++++++.|++|++||+......... .+|...|.+++|+
T Consensus 448 gs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 448 GSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp EETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred EeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 33444555665321 1122345679999999999999999999999999999998754333222 4688899999999
Q ss_pred CCC--CEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 170 CDD--SLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 170 ~~~--~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
|++ ..|++++.|++|++||+. ..++++++.|+.|++||++.
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 986 689999999999999984 35799999999999999973
No 49
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=4.1e-22 Score=166.78 Aligned_cols=169 Identities=20% Similarity=0.301 Sum_probs=113.1
Q ss_pred ccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee
Q psy16881 14 NGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS 93 (222)
Q Consensus 14 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (222)
+|....+.....|...|.+|+|+|+|++||+|+.||+|++||+.+++.+.... +|.... ..+.. ........
T Consensus 134 tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~--~h~~~v-~~~s~-----~~~~l~sg 205 (420)
T 4gga_A 134 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARV-GSLSW-----NSYILSSG 205 (420)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCE-EEEEE-----ETTEEEEE
T ss_pred CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCce-EEEee-----CCCEEEEE
Confidence 44444333222346789999999999999999999999999999988776653 332211 11110 01111111
Q ss_pred eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eEEEeccCCccEEEEEEc
Q psy16881 94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT----CIKTLESHTRYVTCCTFS 169 (222)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~~V~~~~~s 169 (222)
.....+..++..........+.+|...+..+.++++++++++++.|+.|++||..+++ .+.....|...|.+++|+
T Consensus 206 s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 285 (420)
T 4gga_A 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285 (420)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred eCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence 1222233332211112223456799999999999999999999999999999997654 345667788889999998
Q ss_pred CCC-CEEEE--eeCCCeEEEEeCC
Q psy16881 170 CDD-SLLAS--GSNDKTVTIWDML 190 (222)
Q Consensus 170 ~~~-~~l~s--~s~D~~i~lwd~~ 190 (222)
|.+ .++++ |+.|++|++||+.
T Consensus 286 p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 286 PWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp TTCTTEEEEEECTTTCEEEEEETT
T ss_pred CCcccEEEEEeecCCCEEEEEeCC
Confidence 865 44444 4578899999873
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.90 E-value=5.9e-22 Score=161.82 Aligned_cols=181 Identities=20% Similarity=0.191 Sum_probs=130.7
Q ss_pred eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
.|.+.|.+++|+|++++|++++.||+|++|++.+...........+... +.. +.+.+.....+.......+..++.
T Consensus 50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-v~~---~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA-ARC---VRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC-EEE---EEECTTSSEEEEEETTSSEEEEEE
T ss_pred CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc-eeE---EEECCCCCEEEEEeCCCEEEEEEe
Confidence 3478899999999999999999999999999987764443322222211 111 112222222222232333444443
Q ss_pred eeecc---CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC------------------CCCceEEEeccCCccE
Q psy16881 105 GVYGQ---DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV------------------PSLTCIKTLESHTRYV 163 (222)
Q Consensus 105 ~~~~~---~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~------------------~~~~~~~~~~~~~~~V 163 (222)
..... .......|...|.+++|+|+++++++++.||.|++||+ ..++++..+.+|...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 21110 11122458899999999999999999999999999995 3677888898999999
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 164 TCCTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 164 ~~~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
.+++|+|++++|++++.|+.|++||+. ..+++++ .|+.|++||++.
T Consensus 206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999999999999999999999984 2345554 899999999976
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.3e-22 Score=162.71 Aligned_cols=178 Identities=24% Similarity=0.345 Sum_probs=130.5
Q ss_pred eccceEEEEEcCC--CCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCC--cccceeeeeeeee
Q psy16881 26 IGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQI 99 (222)
Q Consensus 26 ~~~~v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 99 (222)
|.+.|.+++|+|+ +++|++|+.||+|++||+.+.. ..... ..+... +.. +.+.+. ....+.......+
T Consensus 54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~-v~~---~~~~~~~~~~~l~~~~~d~~i 127 (379)
T 3jrp_A 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH--AVHSAS-VNS---VQWAPHEYGPLLLVASSDGKV 127 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSC-EEE---EEECCGGGCSEEEEEETTSEE
T ss_pred CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee--cCCCcc-eEE---EEeCCCCCCCEEEEecCCCcE
Confidence 4788999999987 9999999999999999998875 33322 222211 111 112222 1222223333345
Q ss_pred Eeeeeeeec-cCCccccccCCCEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCCc----eEEEeccCCc
Q psy16881 100 IPTRVGVYG-QDSETVGRHTSAVTSVRFNH-------------KSSLLVSGSVDKTVKLWDVPSLT----CIKTLESHTR 161 (222)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~h~~~i~~l~~~~-------------~~~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~ 161 (222)
..++..... .....+..|...|.+++|+| +++++++++.||.|++||+++.+ ....+.+|..
T Consensus 128 ~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 207 (379)
T ss_dssp EEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred EEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence 555432111 11224457899999999999 68999999999999999997653 4567788999
Q ss_pred cEEEEEEcCC---CCEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 162 YVTCCTFSCD---DSLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 162 ~V~~~~~s~~---~~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
.|.+++|+|+ +++|++++.|+.|++||+. ..+|++++.|+.|++||++
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 9999999999 8999999999999999974 3469999999999999987
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.90 E-value=1e-21 Score=159.74 Aligned_cols=136 Identities=21% Similarity=0.374 Sum_probs=120.1
Q ss_pred eccceEEEEEcCC----CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881 26 IGSNMRCVRFSPD----TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP 101 (222)
Q Consensus 26 ~~~~v~~l~~spd----g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (222)
+.+.|.+++|+|+ +++|++|+.||+|++||+.+++.+..
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~------------------------------------- 110 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH------------------------------------- 110 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE-------------------------------------
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee-------------------------------------
Confidence 4578999999999 67999999999999999875433221
Q ss_pred eeeeeeccCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEe---ccCCccEEEEEEcCCCCEEEE
Q psy16881 102 TRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL---ESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~V~~~~~s~~~~~l~s 177 (222)
+.+|...|.+++|+| +++++++++.||.|++||+++++.+..+ .+|...|.+++|+|++++|++
T Consensus 111 ------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 111 ------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp ------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred ------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEE
Confidence 124788999999999 8899999999999999999999888887 789999999999999999999
Q ss_pred eeCCCeEEEEeCC-------------------------------------------------CCeEEEeeCCCcEEEEeC
Q psy16881 178 GSNDKTVTIWDML-------------------------------------------------ATLLASGSNDKTVTIWDM 208 (222)
Q Consensus 178 ~s~D~~i~lwd~~-------------------------------------------------~~~l~s~~~d~~i~iwd~ 208 (222)
++.|+.|++||+. ..++++++.|+.|++||+
T Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKP 258 (366)
T ss_dssp EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEE
T ss_pred ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeC
Confidence 9999999999985 457999999999999998
Q ss_pred CC
Q psy16881 209 RG 210 (222)
Q Consensus 209 ~~ 210 (222)
+.
T Consensus 259 ~~ 260 (366)
T 3k26_A 259 GK 260 (366)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-22 Score=168.98 Aligned_cols=178 Identities=20% Similarity=0.338 Sum_probs=126.2
Q ss_pred eeccceEEEEEcC-CCCeEEEecCCCeEEEEeCCC---Cc---eEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881 25 HIGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDD---LS---LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK 97 (222)
Q Consensus 25 ~~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (222)
+|.+.|.+++|+| ++++|++|+.||+|++||+.+ .. ..... .|. ..+.. +.+.+.....+.+....
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~-~~v~~---~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCS-STVTQ---ITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECS-SCEEE---EEECTTSSEEEEEETTS
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec---cCC-CCEEE---EEEeCCCCEEEEEeCCC
Confidence 4578999999999 999999999999999999865 22 11111 111 11111 11222222222333333
Q ss_pred eeEeeeeee--eccCCc----------cccc--cCCCEEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc--C
Q psy16881 98 QIIPTRVGV--YGQDSE----------TVGR--HTSAVTSVR--FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES--H 159 (222)
Q Consensus 98 ~~~~~~~~~--~~~~~~----------~~~~--h~~~i~~l~--~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~--~ 159 (222)
.+..|+... .+.... .+.. +...+.++. ++++++++++|+.|+.|++||+++++++..+.+ |
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 444454321 110000 1111 456677776 557889999999999999999999999998887 7
Q ss_pred CccEEEEEEcCCCCEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 160 TRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 160 ~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
...|.+++|+|++++|++++.|+.|++||+. ..++++++.|+.|++||++
T Consensus 214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 8899999999999999999999999999974 1279999999999999997
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.90 E-value=7.7e-22 Score=159.24 Aligned_cols=146 Identities=25% Similarity=0.491 Sum_probs=121.8
Q ss_pred EEeeeeeeccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881 19 ILRGSVHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK 97 (222)
Q Consensus 19 ~~~~~~~~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (222)
+|++| .+.|++|+|+|+ +++|+|||.||+|++||+.+.......
T Consensus 33 tL~GH---~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~-------------------------------- 77 (340)
T 4aow_A 33 TLKGH---NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------------- 77 (340)
T ss_dssp EECCC---SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------------------------
T ss_pred EECCc---cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------------------------
Confidence 34455 889999999998 689999999999999998643211000
Q ss_pred eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 177 (222)
....+.+|...|.+++|+|+++++++++.|+.|++|+............+...+....+++++++|++
T Consensus 78 ------------~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 145 (340)
T 4aow_A 78 ------------PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145 (340)
T ss_dssp ------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred ------------eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCcccee
Confidence 00123468999999999999999999999999999999988888888888888999999999999999
Q ss_pred eeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 178 GSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 178 ~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
++.|+.+++||+. ..++++++.|+.|++||++..
T Consensus 146 ~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~ 205 (340)
T 4aow_A 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205 (340)
T ss_dssp EETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred ecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence 9999999999973 246889999999999999843
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.89 E-value=2.1e-21 Score=163.81 Aligned_cols=178 Identities=22% Similarity=0.363 Sum_probs=130.2
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|.+++|+|++ +|++|+.||+|++||+.++.....+. ++... +......+. ......+.......+..|+..
T Consensus 161 h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--~h~~~-v~~l~~~~~-~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE--GHNST-VRCLDIVEY-KNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp CSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSC-EEEEEEEES-SSCEEEEEEETTSCEEEEECC
T ss_pred CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC--CCCCc-cEEEEEecC-CCCCEEEEEcCCCcEEEeeCC
Confidence 47889999999988 89999999999999999887776653 22211 111110000 011111222222233333321
Q ss_pred eecc----------------------CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE
Q psy16881 106 VYGQ----------------------DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV 163 (222)
Q Consensus 106 ~~~~----------------------~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V 163 (222)
.... ....+.+|...|.++ +++++++++|+.||.|++||+++++++..+.+|...|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 313 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE
Confidence 1100 012345688888877 4668999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 164 TCCTFSCDDSLLASGSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 164 ~~~~~s~~~~~l~s~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
.+++|+|++++|++++.|+.|++||+. ..++++++.|+.|++||++.
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999999999984 35799999999999999984
No 56
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.89 E-value=1.1e-21 Score=164.36 Aligned_cols=178 Identities=17% Similarity=0.274 Sum_probs=126.4
Q ss_pred cceEEEEEcCCC--CeEEEecCCCeEEEEeCCCCceEEeec--------------------------------------c
Q psy16881 28 SNMRCVRFSPDT--RLLATGGDDETVTVWRSDDLSLIMETN--------------------------------------D 67 (222)
Q Consensus 28 ~~v~~l~~spdg--~~l~tgs~Dg~i~iwd~~~~~~~~~~~--------------------------------------~ 67 (222)
+.|.+++|+|++ .+|++++.||+|++|++.+........ .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 779999999998 789999999999999987644321100 0
Q ss_pred CCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccC-------CccccccCCCEEEEEEcCCC-CEEEEEeCC
Q psy16881 68 RGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQD-------SETVGRHTSAVTSVRFNHKS-SLLVSGSVD 139 (222)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~i~~l~~~~~~-~~l~sg~~d 139 (222)
.+|.. .+.. +.+.+.....+.+ ....+..|+....... ...+.+|...|.+++|+|++ +++++|+.|
T Consensus 174 ~~h~~-~v~~---~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 174 NAHTY-HINS---ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp SCCSS-CCCE---EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred cCCCc-ceEE---EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 01110 0110 1111222222222 3334555543211111 12356799999999999998 899999999
Q ss_pred CcEEEEeCCCCce----EEEeccCCc------------cEEEEEEcCCCCEEEEeeCCCeEEEEeCCC------------
Q psy16881 140 KTVKLWDVPSLTC----IKTLESHTR------------YVTCCTFSCDDSLLASGSNDKTVTIWDMLA------------ 191 (222)
Q Consensus 140 g~I~iwd~~~~~~----~~~~~~~~~------------~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~------------ 191 (222)
|.|++||+++++. +..+.+|.. .|.+++|+|++++|++++. +.|++||+..
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 9999999998876 678888876 8999999999999999999 9999999841
Q ss_pred ---------------------------CeEEEeeCCCcEEEEeCCCC
Q psy16881 192 ---------------------------TLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 192 ---------------------------~~l~s~~~d~~i~iwd~~~~ 211 (222)
.+|++++.|+.|++||+++.
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 35899999999999999843
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-22 Score=175.41 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=129.6
Q ss_pred eeeccceEEEEEcCC------CCeEEEecCCCeEEEEeCCCCceEE----ee-----ccCCCcceeeccceecCccCCcc
Q psy16881 24 VHIGSNMRCVRFSPD------TRLLATGGDDETVTVWRSDDLSLIM----ET-----NDRGHTQGRIEGWGRVPACPLCR 88 (222)
Q Consensus 24 ~~~~~~v~~l~~spd------g~~l~tgs~Dg~i~iwd~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~ 88 (222)
.|+.+.|..++|+|+ +++||+++.||+|++|++.+..... .. ...++. ..+.... +... .
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-~~v~sv~---~s~~-~ 278 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-SLITTFD---FLSP-T 278 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-TCEEEEE---ESSS-S
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC-CCEEEEE---ecCC-C
Confidence 345678999999997 5799999999999999997653210 00 001111 1111111 1111 1
Q ss_pred cceeeeeeeeeEeeeeeeeccCCccccccCCCEEEE--EEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCc--cE
Q psy16881 89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSV--RFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTR--YV 163 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l--~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~V 163 (222)
..+.+.....+..|+..........+.+|...|.++ .|++++ ++|+||+.|++|+|||+++++++..+.+|.. .|
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v 358 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL 358 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence 223333344566665432212223467899999999 567887 8999999999999999998877666666653 47
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 164 TCCTFSCDDSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 164 ~~~~~s~~~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
.+++|+|+++.+++++.|++|++||++ .++|++|+.|++|++||+.+.
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 899999999999999999999999974 356899999999999998754
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-22 Score=167.15 Aligned_cols=161 Identities=17% Similarity=0.268 Sum_probs=119.6
Q ss_pred eccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCCceEEeeccCCCc---ceeeccceecCccCCcccceeee-eee---
Q psy16881 26 IGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHT---QGRIEGWGRVPACPLCRTRVFST-FVK--- 97 (222)
Q Consensus 26 ~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 97 (222)
|...|.+++|+|+ +++|++++.||+|++||+.+.+........... ...+.. +.+.+.....+... ...
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV---VEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE---EEECSSCTTEEEEEECCSSSC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE---EEECCCCCCEEEEEECCCCCc
Confidence 4678999999999 789999999999999999988776665322100 111111 11222221122222 222
Q ss_pred eeEeeeeeeeccCCcccc-ccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CE
Q psy16881 98 QIIPTRVGVYGQDSETVG-RHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SL 174 (222)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~ 174 (222)
.+..++..........+. +|...|.+++|+| +++++++++.||.|++||+++++++..+.+|...|.+++|+|++ .+
T Consensus 241 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp CCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred eEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence 344444322222334555 7999999999999 88999999999999999999999999999999999999999999 89
Q ss_pred EEEeeCCCeEEEEeC
Q psy16881 175 LASGSNDKTVTIWDM 189 (222)
Q Consensus 175 l~s~s~D~~i~lwd~ 189 (222)
|++++.|+.|++||+
T Consensus 321 l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 321 FACASFDNKIEVQTL 335 (416)
T ss_dssp EEECCSSSEEEEEES
T ss_pred EEEEecCCcEEEEEc
Confidence 999999999999996
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.2e-21 Score=156.80 Aligned_cols=139 Identities=22% Similarity=0.389 Sum_probs=121.5
Q ss_pred EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ 98 (222)
Q Consensus 19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (222)
++.+| .+.|.+++|+|++++|++|+.||.|++||+.++.....
T Consensus 27 ~l~~h---~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------------------------------- 69 (369)
T 3zwl_B 27 KLTGH---ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT---------------------------------- 69 (369)
T ss_dssp EEECC---SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE----------------------------------
T ss_pred EEEEe---eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh----------------------------------
Confidence 34455 88899999999999999999999999999875443321
Q ss_pred eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe
Q psy16881 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG 178 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~ 178 (222)
+.+|...|.+++|+|++++|++++.||.|++||+++++++..+. +...|.+++|+|++++|+++
T Consensus 70 ---------------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 70 ---------------LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp ---------------ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred ---------------hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEe
Confidence 13478899999999999999999999999999999999888887 78889999999999999999
Q ss_pred eCC-----CeEEEEeCC------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 179 SND-----KTVTIWDML------------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 179 s~D-----~~i~lwd~~------------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+.+ +.|++||+. ..++++++.|+.|++||++.
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 999 999999973 23799999999999999985
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.89 E-value=1.7e-21 Score=162.00 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=126.7
Q ss_pred eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
.|.+.|.+++|+|++++|++|+.||+|++||+.++.....+. +|... +.. +.+.+.....+.......+..|+.
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRAT-VTD---IAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSC-EEE---EEEETTTTEEEEEETTSCEEEEET
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCc-EEE---EEEcCCCCEEEEEcCCCcEEEeEC
Confidence 347889999999999999999999999999999877665542 22211 111 111222222222222233444432
Q ss_pred ee--eccCCc---------------------cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCC
Q psy16881 105 GV--YGQDSE---------------------TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHT 160 (222)
Q Consensus 105 ~~--~~~~~~---------------------~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~ 160 (222)
.. ...... ....+...+.+++|+|+++++++|+.||.|++||+++++.+..+. .|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 290 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT 290 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence 10 000000 011133455556668899999999999999999999888776664 578
Q ss_pred ccEEEEEEcCCCC-EEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 161 RYVTCCTFSCDDS-LLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 161 ~~V~~~~~s~~~~-~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
..|.+++|+|+++ +|++++.|+.|++||+. ..++++++.|+.|++||+..
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 8999999999998 99999999999999984 24799999999999999874
No 61
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.89 E-value=6.6e-22 Score=164.35 Aligned_cols=143 Identities=24% Similarity=0.476 Sum_probs=120.5
Q ss_pred eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
|.+.|.+++|+| ++++|++|+.||+|++|++.+.......
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~--------------------------------------- 120 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--------------------------------------- 120 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB---------------------------------------
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc---------------------------------------
Confidence 478899999999 9999999999999999998754221100
Q ss_pred eeeccCCccccccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEe--ccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTL--ESHTRYVTCCTFSCDDSLLASGSND 181 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~--~~~~~~V~~~~~s~~~~~l~s~s~D 181 (222)
......+.+|...|.+++|+|++ +++++++.||.|++||+++++.+..+ .+|...|.+++|+|++++|++++.|
T Consensus 121 ---~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 197 (402)
T 2aq5_A 121 ---REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197 (402)
T ss_dssp ---CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred ---CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence 00011234689999999999998 69999999999999999999999888 8899999999999999999999999
Q ss_pred CeEEEEeCC-------------------------CCeEEEe---eCCCcEEEEeCCC
Q psy16881 182 KTVTIWDML-------------------------ATLLASG---SNDKTVTIWDMRG 210 (222)
Q Consensus 182 ~~i~lwd~~-------------------------~~~l~s~---~~d~~i~iwd~~~ 210 (222)
+.|++||+. ..+++++ +.|+.|++||++.
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 999999974 2357777 6899999999984
No 62
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=1.6e-21 Score=156.02 Aligned_cols=168 Identities=19% Similarity=0.285 Sum_probs=99.6
Q ss_pred ccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee
Q psy16881 14 NGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS 93 (222)
Q Consensus 14 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (222)
+|+.........|...|.+++|+|++++|++|+.||+|++|++.+++.+.... +|.... ..+.. ........
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--~h~~~~-~~~~~-----~~~~l~s~ 125 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARV-GSLSW-----NSYILSSG 125 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCE-EEEEE-----ETTEEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--CccceE-EEeec-----CCCEEEEE
Confidence 45555433223346789999999999999999999999999999988776653 222111 11100 00111111
Q ss_pred eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce----EEEeccCCccEEEEEEc
Q psy16881 94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC----IKTLESHTRYVTCCTFS 169 (222)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~----~~~~~~~~~~V~~~~~s 169 (222)
........+...........+.+|...+..+.++++++++++++.|+.|++||+++++. ......+...|.++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 205 (318)
T 4ggc_A 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205 (318)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred ecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEec
Confidence 11111211111111111234567899999999999999999999999999999976542 23334445555555555
Q ss_pred CCCCE---EEEeeCCCeEEEEeC
Q psy16881 170 CDDSL---LASGSNDKTVTIWDM 189 (222)
Q Consensus 170 ~~~~~---l~s~s~D~~i~lwd~ 189 (222)
+.+.. +++++.+++|++||.
T Consensus 206 ~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 206 PWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp TTSTTEEEEEECTTTCEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEec
Confidence 54331 123444555555554
No 63
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.89 E-value=3.1e-21 Score=155.17 Aligned_cols=179 Identities=15% Similarity=0.239 Sum_probs=129.8
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
+...|.+++|+|++++|++++.||+|++|++.+...........+... +.. +.+.+.............+..++..
T Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-i~~---~~~~~~~~~l~~~~~dg~v~~~d~~ 171 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA-CYA---LAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC-EEE---EEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc-eEE---EEECCCCCEEEEEeCCCcEEEEeCC
Confidence 468899999999999999999999999999987663221111111111 111 1111222222222222334444321
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
. ......+..|...|.+++|+|+++++++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|+
T Consensus 172 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 172 N-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp T-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred C-CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 1 11123455688999999999999999999999999999999988877764 677899999999999999999999999
Q ss_pred EEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 186 IWDML----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 186 lwd~~----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+||+. ..++++++.|+.|++||+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 99984 35799999999999999974
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.3e-22 Score=166.84 Aligned_cols=179 Identities=15% Similarity=0.244 Sum_probs=126.7
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCC---CCceEEeeccCCCcceeeccceecC-------------ccCCccc
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSD---DLSLIMETNDRGHTQGRIEGWGRVP-------------ACPLCRT 89 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 89 (222)
|.+.|.+++|+|++++|++|+.||+|++||++ ++........ + .+......+ .......
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC--E---CIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE--E---EEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc--c---eeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 57889999999999999999999999999984 3333322110 0 000000000 0011111
Q ss_pred ceeeeeeeeeEeeeeeeeccCCccccc--cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccEEEE
Q psy16881 90 RVFSTFVKQIIPTRVGVYGQDSETVGR--HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCC 166 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V~~~ 166 (222)
.+.......+..|+... ......+.. |...|++++|+|+++++++|+.||.|++||+++++++..+. .|...|.++
T Consensus 185 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 263 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV 263 (437)
T ss_dssp EEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred EEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence 22222223444444211 111223344 78999999999999999999999999999999999988876 788899999
Q ss_pred EEc----CCCCEEEEeeCCCeEEEEeCCC------------------------------------------------CeE
Q psy16881 167 TFS----CDDSLLASGSNDKTVTIWDMLA------------------------------------------------TLL 194 (222)
Q Consensus 167 ~~s----~~~~~l~s~s~D~~i~lwd~~~------------------------------------------------~~l 194 (222)
+|+ +++.+|++++.|+.|++||+.. .++
T Consensus 264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l 343 (437)
T 3gre_A 264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKIL 343 (437)
T ss_dssp EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEE
T ss_pred EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEE
Confidence 665 5678999999999999999841 369
Q ss_pred EEeeCCCcEEEEeCCC
Q psy16881 195 ASGSNDKTVTIWDMRG 210 (222)
Q Consensus 195 ~s~~~d~~i~iwd~~~ 210 (222)
++++.|+.|++||++.
T Consensus 344 ~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 344 LTDEATSSIVMFSLNE 359 (437)
T ss_dssp EEEGGGTEEEEEETTC
T ss_pred EecCCCCeEEEEECCC
Confidence 9999999999999973
No 65
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.89 E-value=1.4e-21 Score=161.02 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=113.7
Q ss_pred eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
|.+.|.+++|+| ++++|++++.|++|++||+.+... ............+.. +.+.+.....+.......+..++.
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-QVFAKTDSWDYWYCC---VDVSVSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-EEEECCCCSSCCEEE---EEEETTTTEEEEEETTSEEEEEET
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-EEEeccCCCCCCeEE---EEECCCCCEEEEECCCCCEEEEEC
Confidence 478899999999 789999999999999999986332 222111111111111 112222222233333334545543
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC----CceEEEeccCCccEEEEEEcC-CCCEEEEe
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPS----LTCIKTLESHTRYVTCCTFSC-DDSLLASG 178 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~----~~~~~~~~~~~~~V~~~~~s~-~~~~l~s~ 178 (222)
.......+..|...|.+++|+|+++ ++++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|+++
T Consensus 193 --~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 193 --DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp --TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred --CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence 1223345567999999999999998 999999999999999987 5566666 6899999999999 99999999
Q ss_pred eCCCeEEEEeCC
Q psy16881 179 SNDKTVTIWDML 190 (222)
Q Consensus 179 s~D~~i~lwd~~ 190 (222)
+.|+.|++||+.
T Consensus 270 ~~d~~i~iwd~~ 281 (383)
T 3ei3_B 270 DQRNEIRVYSSY 281 (383)
T ss_dssp ESSSEEEEEETT
T ss_pred cCCCcEEEEECC
Confidence 999999999984
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=2.2e-21 Score=161.34 Aligned_cols=177 Identities=21% Similarity=0.310 Sum_probs=132.2
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
+.+.|.+++|+|++++|++|+.||.|++||+.++....... ++... +.... . .............+..++..
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~-v~~~~---~--~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQAR-VGCLS---W--NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSC-EEEEE---E--ETTEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCc-eEEEE---E--CCCEEEEEcCCCCEEEEecc
Confidence 47889999999999999999999999999999887776653 22211 11111 1 11112222233344444432
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEee--CCC
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGS--NDK 182 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s--~D~ 182 (222)
........+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+..|...|.+++|+|++ .++++++ .|+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 2222234456799999999999999999999999999999999999999999999999999999976 5666655 799
Q ss_pred eEEEEeCC----------------------CCeEEE--eeCCCcEEEEeCCC
Q psy16881 183 TVTIWDML----------------------ATLLAS--GSNDKTVTIWDMRG 210 (222)
Q Consensus 183 ~i~lwd~~----------------------~~~l~s--~~~d~~i~iwd~~~ 210 (222)
.|++||+. ..++++ |+.|+.|++||+..
T Consensus 285 ~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 285 QIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 99999984 345777 44899999999874
No 67
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-21 Score=165.25 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=114.7
Q ss_pred eccceEEEEEcCCCCeE-EEecCCCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881 26 IGSNMRCVRFSPDTRLL-ATGGDDETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT 102 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (222)
+.+.|.+++|+|++++| ++|+.||+|++|++. ++.....+....+. ..+.. +.+.+.....+.+.....+..+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~v~~---~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS-KRPNA---ISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS-SCEEE---EEECTTSSEEEEEETTSEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC-CCceE---EEEcCCCCEEEEEeCCCcEEEE
Confidence 45679999999999996 899999999999998 66655443211111 11111 1222222222233222233333
Q ss_pred eeeeec--c-CCccccccCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCceEEE-eccCCccEEEEEEcCCCCEE
Q psy16881 103 RVGVYG--Q-DSETVGRHTSAVTSVRFNHK---SSLLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYVTCCTFSCDDSLL 175 (222)
Q Consensus 103 ~~~~~~--~-~~~~~~~h~~~i~~l~~~~~---~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V~~~~~s~~~~~l 175 (222)
+..... . ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++++.. +.+|...|.+++|+ ++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 321111 1 12256679999999999999 88999999999999999999888877 56899999999999 99999
Q ss_pred EEeeCCCeEEEEeCC
Q psy16881 176 ASGSNDKTVTIWDML 190 (222)
Q Consensus 176 ~s~s~D~~i~lwd~~ 190 (222)
++++.|++|++||+.
T Consensus 256 ~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWK 270 (450)
T ss_dssp EEEESSSEEEEEETT
T ss_pred EEEeCCCeEEEEECC
Confidence 999999999999973
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.89 E-value=1.4e-21 Score=159.57 Aligned_cols=182 Identities=17% Similarity=0.164 Sum_probs=131.0
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc--eEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS--LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
|.+.|.+++|+|++++|++|+.||+|++|++.+.. ....+. ++... +.. +.+.+.....+.......+..|+
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~h~~~-v~~---~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--EHNGQ-VTG---VDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--CCSSC-EEE---EEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--CCCCc-ccE---EEEeCCCCEEEEEcCCCeEEEEE
Confidence 36889999999999999999999999999998775 444432 22211 111 11222222222233333455554
Q ss_pred eeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---EE-EeccCCccEEEEEEcCCCCEEEEe
Q psy16881 104 VGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC---IK-TLESHTRYVTCCTFSCDDSLLASG 178 (222)
Q Consensus 104 ~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~---~~-~~~~~~~~V~~~~~s~~~~~l~s~ 178 (222)
..... .....+..|...|.+++|+|+++++++++.|+.|++||++..+. .. ...+|...|.+++|+|++++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence 32110 01112346889999999999999999999999999999987652 33 336788999999999999999999
Q ss_pred eCCCeEEEEeCC-----------------------------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 179 SNDKTVTIWDML-----------------------------------------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 179 s~D~~i~lwd~~-----------------------------------------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
+.|+.|++||+. ..++++++.|+.|++||++ ++..
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 999999999931 2479999999999999997 4443
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.89 E-value=7.8e-22 Score=164.04 Aligned_cols=176 Identities=18% Similarity=0.241 Sum_probs=128.5
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (222)
..+....|+|++++|++|+.||.|++||+.+....... .+|... +.. +.+.+.....+.+.....+..|+.. .
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~-v~~---~~~~~~~~~l~s~s~d~~i~iwd~~-~ 170 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID--QAHVSE-ITK---LKFFPSGEALISSSQDMQLKIWSVK-D 170 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET--TSSSSC-EEE---EEECTTSSEEEEEETTSEEEEEETT-T
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec--ccccCc-cEE---EEECCCCCEEEEEeCCCeEEEEeCC-C
Confidence 33455578999999999999999999999877665543 222221 211 1222222223333333455555532 1
Q ss_pred ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc---CCccEEE-------------------
Q psy16881 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES---HTRYVTC------------------- 165 (222)
Q Consensus 108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~---~~~~V~~------------------- 165 (222)
......+.+|...|.+++|+|+++++++++.|+.|++||+++++.+..+.. +...|.+
T Consensus 171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 223345667999999999999999999999999999999999998888864 3334444
Q ss_pred --EEEcCCCCEEEEeeCCCeEEEEeCC------------------------CC-eEEEeeCCCcEEEEeCCC
Q psy16881 166 --CTFSCDDSLLASGSNDKTVTIWDML------------------------AT-LLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 166 --~~~s~~~~~l~s~s~D~~i~lwd~~------------------------~~-~l~s~~~d~~i~iwd~~~ 210 (222)
++|+|++++|++++.|+.|++||+. .. ++++++.|+.|++||++.
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 322 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence 4457899999999999999999984 23 899999999999999984
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-20 Score=152.11 Aligned_cols=177 Identities=14% Similarity=0.192 Sum_probs=131.2
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee-----eeeE
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV-----KQII 100 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 100 (222)
|.+.|.+++|+|++++|++++.||+|++||+.++.......... .+.. +.+.+.....+..... ..+.
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~v~~---~~~~~~~~~l~~~~~~~~~~~g~i~ 145 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV----PVKR---VEFSPCGNYFLAILDNVMKNPGSIN 145 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS----CEEE---EEECTTSSEEEEEECCBTTBCCEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC----CeEE---EEEccCCCEEEEecCCccCCCCEEE
Confidence 47889999999999999999999999999999887776653111 1111 1111222222222211 2333
Q ss_pred eeeeeeec----------cCCccccccCC--CEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEeccCCccEEEEE
Q psy16881 101 PTRVGVYG----------QDSETVGRHTS--AVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCT 167 (222)
Q Consensus 101 ~~~~~~~~----------~~~~~~~~h~~--~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~V~~~~ 167 (222)
.++..... .....+..|.. .+.+++|+++++++++++.||.|++||+++ .+.+..+..|...|.+++
T Consensus 146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 225 (369)
T 3zwl_B 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ 225 (369)
T ss_dssp EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE
T ss_pred EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE
Confidence 33322111 11122334555 899999999999999999999999999998 678888999999999999
Q ss_pred EcCCCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCC--------------cEEEEeCC
Q psy16881 168 FSCDDSLLASGSNDKTVTIWDML----------------------ATLLASGSNDK--------------TVTIWDMR 209 (222)
Q Consensus 168 ~s~~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~--------------~i~iwd~~ 209 (222)
|+|++++|++++.|+.|++||+. ..++++++.++ .+++||+.
T Consensus 226 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 226 FSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred ECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 99999999999999999999984 35688888777 89999987
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=1.3e-20 Score=155.34 Aligned_cols=159 Identities=22% Similarity=0.345 Sum_probs=113.7
Q ss_pred eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
|...|.+++|+| ++++|++++.||.|++||+.+............ +......+........+.......+..++.
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC----EEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc----eeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 578899999999 778999999999999999998877665532111 111111111111112222222333444442
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc-eEEEe---------------ccCCccEEEEE
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLT-CIKTL---------------ESHTRYVTCCT 167 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~-~~~~~---------------~~~~~~V~~~~ 167 (222)
. .......+..|...|.+++|+|+++ ++++++.||.|++||+++.. ++..+ .+|...|.+++
T Consensus 174 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 174 K-SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp S-SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred C-CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 1 1222345567899999999999998 69999999999999998764 34444 56888999999
Q ss_pred EcCCCCEEEEeeCCCeEEEEeC
Q psy16881 168 FSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 168 ~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
|+|++++|++++.|+.|++||+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEET
T ss_pred EcCCCCEEEEecCCCeEEEEEC
Confidence 9999999999999999999996
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.89 E-value=5.2e-22 Score=163.01 Aligned_cols=159 Identities=17% Similarity=0.147 Sum_probs=108.4
Q ss_pred eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc---eEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS---LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP 101 (222)
Q Consensus 25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (222)
.|...|.+++|+|++++|++++.||+|++||+.+.. ..... ..+... +.. +.+.+.....+.......+..
T Consensus 53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~--~~~~~~-v~~---~~~~~~~~~l~~~~~d~~i~i 126 (377)
T 3dwl_C 53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL--LRLNRA-ATF---VRWSPNEDKFAVGSGARVISV 126 (377)
T ss_dssp CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC--CCCSSC-EEE---EECCTTSSCCEEEESSSCEEE
T ss_pred cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe--cccCCc-eEE---EEECCCCCEEEEEecCCeEEE
Confidence 357889999999999999999999999999998765 22222 222211 111 222222233333333344555
Q ss_pred eeeeeecc--CCccccc-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC------------------CCceEEEeccCC
Q psy16881 102 TRVGVYGQ--DSETVGR-HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP------------------SLTCIKTLESHT 160 (222)
Q Consensus 102 ~~~~~~~~--~~~~~~~-h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~------------------~~~~~~~~~~~~ 160 (222)
|+...... ....+.+ |...|.+++|+|+++++++++.|+.|++||++ .++++..+ +|.
T Consensus 127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (377)
T 3dwl_C 127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG 205 (377)
T ss_dssp CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence 54322111 1234455 89999999999999999999999999999985 34566666 899
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881 161 RYVTCCTFSCDDSLLASGSNDKTVTIWDML 190 (222)
Q Consensus 161 ~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~ 190 (222)
..|.+++|+|++++|++++.|+.|++||+.
T Consensus 206 ~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 206 GWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp SSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred ceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 999999999999999999999999999963
No 73
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.89 E-value=7.2e-22 Score=160.63 Aligned_cols=178 Identities=20% Similarity=0.327 Sum_probs=128.6
Q ss_pred eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeecc-CCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETND-RGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
|...|.+++|+| ++++|++|+.||+|++||+.++........ .++. ..+.. +.+.+.....+.......+..++
T Consensus 114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~---~~~~~~~~~l~~~~~dg~i~i~d 189 (366)
T 3k26_A 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-DEVLS---ADYDLLGEKIMSCGMDHSLKLWR 189 (366)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS-SCEEE---EEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc-CceeE---EEECCCCCEEEEecCCCCEEEEE
Confidence 378899999999 899999999999999999998877766521 1121 11111 11122222222222233344443
Q ss_pred eeeecc---------------------------CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce----
Q psy16881 104 VGVYGQ---------------------------DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC---- 152 (222)
Q Consensus 104 ~~~~~~---------------------------~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~---- 152 (222)
...... .......|...|.+++|+ ++++++++.|+.|++||+++.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~ 267 (366)
T 3k26_A 190 INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDK 267 (366)
T ss_dssp SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccc
Confidence 211000 001122388999999998 78999999999999999887643
Q ss_pred ----------EEEeccCCccEEEEEEcCC--CCEEEEeeCCCeEEEEeCC-----------------------------C
Q psy16881 153 ----------IKTLESHTRYVTCCTFSCD--DSLLASGSNDKTVTIWDML-----------------------------A 191 (222)
Q Consensus 153 ----------~~~~~~~~~~V~~~~~s~~--~~~l~s~s~D~~i~lwd~~-----------------------------~ 191 (222)
+..+..|...|.+++|+|+ +++|++++.|+.|++||+. .
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 7778889999999999999 9999999999999999983 3
Q ss_pred CeEEEeeCCCcEEEEeCC
Q psy16881 192 TLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 192 ~~l~s~~~d~~i~iwd~~ 209 (222)
.+|++++.|+.|++||+.
T Consensus 348 ~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CeEEEEeCCCEEEEEEec
Confidence 579999999999999985
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.88 E-value=1.8e-21 Score=174.57 Aligned_cols=177 Identities=22% Similarity=0.345 Sum_probs=135.9
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
.+.|.+++|+|+|++|++|+.||+|++||+.++....... ++.. .+.. +.+.+.....+.......+..|+..
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~-~v~~---~~~s~~~~~l~~~~~dg~i~vw~~~- 85 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTET-PVRA---GKFIARKNWIIVGSDDFRIRVFNYN- 85 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSS-CEEE---EEEEGGGTEEEEEETTSEEEEEETT-
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--cCCC-cEEE---EEEeCCCCEEEEEeCCCeEEEEECC-
Confidence 7889999999999999999999999999999887766553 2211 1111 1122222223333333344445421
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEeccCCccEEEEEEcC-CCCEEEEeeCCCeE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL-TCIKTLESHTRYVTCCTFSC-DDSLLASGSNDKTV 184 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i 184 (222)
.+.....+.+|...|.+++|+|+++++++++.||.|++||+.++ .....+.+|...|.+++|+| ++..|++++.|+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 11222345679999999999999999999999999999999876 66778889999999999999 88999999999999
Q ss_pred EEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 185 TIWDML--------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 185 ~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++||+. ..++++++.|+.|++||++.
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 999973 34799999999999999873
No 75
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.3e-21 Score=157.99 Aligned_cols=134 Identities=14% Similarity=0.155 Sum_probs=113.3
Q ss_pred ccceEEEEEcC--CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 27 GSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 27 ~~~v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
.+.|.+++|+| ++++|++++.||+|++||+.++......
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--------------------------------------- 165 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH--------------------------------------- 165 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE---------------------------------------
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------------------------------------
Confidence 57799999999 9999999999999999998755432111
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-EEecc-CCccEEEEEEcCCCCEEEEeeCCC
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI-KTLES-HTRYVTCCTFSCDDSLLASGSNDK 182 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~-~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~ 182 (222)
...|...|.+++|+|+++++++|+.||.|++||+++++.+ ..+.. |...|.+++|+|++.+|++++.+
T Consensus 166 ---------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~- 235 (343)
T 3lrv_A 166 ---------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ- 235 (343)
T ss_dssp ---------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-
T ss_pred ---------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-
Confidence 0124556889999999999999999999999999998877 78888 99999999999999999999955
Q ss_pred eEEEEeCC----------------------------CCeEEEeeC-CCcEEEEeCC
Q psy16881 183 TVTIWDML----------------------------ATLLASGSN-DKTVTIWDMR 209 (222)
Q Consensus 183 ~i~lwd~~----------------------------~~~l~s~~~-d~~i~iwd~~ 209 (222)
.|++||++ ..++++++. |+.|++|++.
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 99999974 236888887 9999999985
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=161.61 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=124.3
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-----------eEEeeccCCCcc-----------eeeccceecCc
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-----------LIMETNDRGHTQ-----------GRIEGWGRVPA 83 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-----------~~~~~~~~~~~~-----------~~~~~~~~~~~ 83 (222)
+.+.|.+++|+|+|++||+|+.||+|++|++.+.. ....+ .+|.. ..+.. +.+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~V~~---l~~ 101 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF--QSHEPEFDYLKSLEIEEKINK---IRW 101 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE--ECCCCEEEGGGTEEECCCCCE---EEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc--ccccccccccccccccCceEE---EEE
Confidence 36889999999999999999999999999988665 22222 22320 11111 111
Q ss_pred cCCc--ccceeeeeeeeeEeeeeeeecc---------------------------------------CCccccccCCCEE
Q psy16881 84 CPLC--RTRVFSTFVKQIIPTRVGVYGQ---------------------------------------DSETVGRHTSAVT 122 (222)
Q Consensus 84 ~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~h~~~i~ 122 (222)
.+.. ...+.+.....+..|+...... ......+|...|.
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 2221 1122223333444444321100 0011356999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEE-------EeccCCccEEEEEEcCCC-CEEEEeeCCCeEEEEeCC---
Q psy16881 123 SVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCIK-------TLESHTRYVTCCTFSCDD-SLLASGSNDKTVTIWDML--- 190 (222)
Q Consensus 123 ~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~~~~-------~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~i~lwd~~--- 190 (222)
+++|+|+++++++| .|+.|++||+++ .+.+. .+.+|...|.+++|+|++ ++|++++.|+.|++||+.
T Consensus 182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 99999999999999 799999999984 44444 256899999999999998 999999999999999963
Q ss_pred ------------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 191 ------------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 ------------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
..+|++++. +.|++||++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 236888888 9999999974
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=4.3e-21 Score=155.98 Aligned_cols=117 Identities=29% Similarity=0.475 Sum_probs=100.3
Q ss_pred eeccceEEEEEcCC---CCeEEEecCCCeEEEEeCCC-CceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE
Q psy16881 25 HIGSNMRCVRFSPD---TRLLATGGDDETVTVWRSDD-LSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII 100 (222)
Q Consensus 25 ~~~~~v~~l~~spd---g~~l~tgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (222)
.|.+.|.+++|+|+ |++|++|+.||.|++|++.+ .....
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------------- 79 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------------------------- 79 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------------------------
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------------------------
Confidence 34788999999999 69999999999999999864 11110
Q ss_pred eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE--cCCCCEEEEe
Q psy16881 101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF--SCDDSLLASG 178 (222)
Q Consensus 101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~--s~~~~~l~s~ 178 (222)
..+.+|...|.+++|+|++++|++++.||.|++||+++++.+. +..|...|.+++| ++++++|+++
T Consensus 80 -----------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~ 147 (368)
T 3mmy_A 80 -----------KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTG 147 (368)
T ss_dssp -----------EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEE
T ss_pred -----------EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEc
Confidence 0123588999999999999999999999999999999887665 5578999999999 8999999999
Q ss_pred eCCCeEEEEeCC
Q psy16881 179 SNDKTVTIWDML 190 (222)
Q Consensus 179 s~D~~i~lwd~~ 190 (222)
+.|+.|++||+.
T Consensus 148 ~~dg~i~vwd~~ 159 (368)
T 3mmy_A 148 SWDKTLKFWDTR 159 (368)
T ss_dssp ETTSEEEEECSS
T ss_pred cCCCcEEEEECC
Confidence 999999999974
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.88 E-value=7.1e-21 Score=154.40 Aligned_cols=180 Identities=14% Similarity=0.186 Sum_probs=126.1
Q ss_pred eccceEEEEEcCCCCe-EEEecC---CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCC---cccceeeeeeee
Q psy16881 26 IGSNMRCVRFSPDTRL-LATGGD---DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL---CRTRVFSTFVKQ 98 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~-l~tgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 98 (222)
|.+.|.+++|+|+++. +++|+. ||+|++|++.++........ ++. ..+.. +.+.+. ....+.......
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~-~~v~~---~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKA-KPIKC---GTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EES-SCEEE---EECTTCCTTTCCEEEEETTSC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-ccc-CcEEE---EEEcCCCCCCceEEEecCCCe
Confidence 4889999999999964 556766 99999999988765433211 111 11111 122222 122233333344
Q ss_pred eEeeeeeeeccCCccccccCCCEEEEEE------cCCCCEEEEEeCCCcEEEEeCCCCc-eEEEeccCCc----cEEEEE
Q psy16881 99 IIPTRVGVYGQDSETVGRHTSAVTSVRF------NHKSSLLVSGSVDKTVKLWDVPSLT-CIKTLESHTR----YVTCCT 167 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~------~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~----~V~~~~ 167 (222)
+..|+..........+.+|...|.++.| +++++++++++.||.|++||+++++ .+..+..|.. .|.++.
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 5555533222234456789999999954 6789999999999999999999876 6677765544 788888
Q ss_pred ----EcCCCCEEEEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 168 ----FSCDDSLLASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 168 ----~s~~~~~l~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
|++++++|++++.|+.|++||+. ..++++++.|+.|++||++.
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 78899999999999999999973 25799999999999999873
No 79
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.88 E-value=4.9e-21 Score=160.86 Aligned_cols=181 Identities=25% Similarity=0.385 Sum_probs=129.4
Q ss_pred eeeccceEEEEEcCC-CCeEEEecCCCeEEEEeCCCC----------ceEEeeccCCCcceeeccceecCccCCcc-cce
Q psy16881 24 VHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDL----------SLIMETNDRGHTQGRIEGWGRVPACPLCR-TRV 91 (222)
Q Consensus 24 ~~~~~~v~~l~~spd-g~~l~tgs~Dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 91 (222)
..|.+.|.+++|+|+ +++|++++.||.|++|++.+. ...... .+|... +.. +.+.+... ..+
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~-v~~---l~~~~~~~~~l~ 198 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL--RGHQKE-GYG---LSWNPNLNGYLL 198 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE--ECCSSC-CCC---EEECTTSTTEEE
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe--cCCCCC-eEE---EEeCCCCCCeEE
Confidence 344788999999997 679999999999999998752 222222 111111 111 11112222 122
Q ss_pred eeeeeeeeEeeeeeeec------cCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC---ceEEEeccCCc
Q psy16881 92 FSTFVKQIIPTRVGVYG------QDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSL---TCIKTLESHTR 161 (222)
Q Consensus 92 ~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~ 161 (222)
.......+..|+..... .....+.+|...|.+++|+| .+++|++++.||.|++||+++. +.+..+..|..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 22233345555432210 11234557899999999999 5679999999999999999876 56777889999
Q ss_pred cEEEEEEcCCCC-EEEEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 162 YVTCCTFSCDDS-LLASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 162 ~V~~~~~s~~~~-~l~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
.|++++|+|++. +|++|+.|+.|++||++ ..++++++.|+.|++||++.
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 999999999987 78899999999999984 13699999999999999975
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.88 E-value=6.2e-21 Score=158.47 Aligned_cols=137 Identities=18% Similarity=0.405 Sum_probs=116.2
Q ss_pred ccceEEEEEcCCC-CeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 27 GSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 27 ~~~v~~l~~spdg-~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
...|.+++|+|++ ++|++++.||+|++||+.++.......
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------------------------- 171 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG--------------------------------------- 171 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---------------------------------------
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---------------------------------------
Confidence 7889999999998 699999999999999987654332210
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe-ccCCcc-EEEEEEcCCCCEEEEe---eC
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRY-VTCCTFSCDDSLLASG---SN 180 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~-V~~~~~s~~~~~l~s~---s~ 180 (222)
...|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|... +.++.|+|++.+|++| +.
T Consensus 172 --------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 172 --------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp --------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred --------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence 0247889999999999999999999999999999999988888 678765 8899999999999999 79
Q ss_pred CCeEEEEeCC-------------------------CCeEE-EeeCCCcEEEEeCCC
Q psy16881 181 DKTVTIWDML-------------------------ATLLA-SGSNDKTVTIWDMRG 210 (222)
Q Consensus 181 D~~i~lwd~~-------------------------~~~l~-s~~~d~~i~iwd~~~ 210 (222)
|+.|++||+. ..+++ +++.|+.|++||++.
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 9999999974 23454 556799999999984
No 81
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.7e-20 Score=155.21 Aligned_cols=178 Identities=15% Similarity=0.212 Sum_probs=132.3
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCccee------------eccceecCccCCcccceee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGR------------IEGWGRVPACPLCRTRVFS 93 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 93 (222)
|...|.+++|+|++++|++++.||.|++|++.++............... +... .+... ...+..
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~ 223 (425)
T 1r5m_A 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDV---EWVDD-DKFVIP 223 (425)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCC---EEEET-TEEEEE
T ss_pred CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEE---EEcCC-CEEEEE
Confidence 4788999999999999999999999999999988776654322111000 0000 00000 111111
Q ss_pred eeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC
Q psy16881 94 TFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS 173 (222)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~ 173 (222)
.....+..++.. .......+..|...|.+++|+|+++++++++.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus 224 ~~~g~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 301 (425)
T 1r5m_A 224 GPKGAIFVYQIT-EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD- 301 (425)
T ss_dssp CGGGCEEEEETT-CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-
T ss_pred cCCCeEEEEEcC-CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-
Confidence 222233333321 112223455789999999999999999999999999999999998888899999999999999999
Q ss_pred EEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 174 LLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 174 ~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
++++++.|+.|++||+. ..++++++.|+.|++||++
T Consensus 302 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 99999999999999984 3579999999999999997
No 82
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.1e-21 Score=173.19 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=120.7
Q ss_pred CCCcccceEEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccc
Q psy16881 10 PSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRT 89 (222)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (222)
.++|.=.+....+| .+.|.+++|+|++++||+|+.||+|++|+.........
T Consensus 3 ~~~~~~~~~~~~gh---~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~------------------------- 54 (902)
T 2oaj_A 3 NKIFSLAETNKYGM---SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK------------------------- 54 (902)
T ss_dssp CTTEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE-------------------------
T ss_pred hheeeeccccccCC---CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE-------------------------
Confidence 34555445444555 78899999999999999999999999998754321110
Q ss_pred ceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881 90 RVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS 169 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s 169 (222)
..|...|.+++|+| +++|++++.|++|++||+++++++..+. |...|++++|+
T Consensus 55 -------------------------~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~s 107 (902)
T 2oaj_A 55 -------------------------LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTD 107 (902)
T ss_dssp -------------------------CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECC
T ss_pred -------------------------cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEEC
Confidence 12567899999999 8899999999999999999999888876 66789999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCC-----------------------------------CeEEEeeCCCcEEEEeCCCC
Q psy16881 170 CDDSLLASGSNDKTVTIWDMLA-----------------------------------TLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 170 ~~~~~l~s~s~D~~i~lwd~~~-----------------------------------~~l~s~~~d~~i~iwd~~~~ 211 (222)
|++++|++|+.||+|++||+.. ..+++|+.|+.| +||++..
T Consensus 108 p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~ 183 (902)
T 2oaj_A 108 ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN 183 (902)
T ss_dssp TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC
Confidence 9999999999999999999731 368889999999 9999843
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.5e-21 Score=162.72 Aligned_cols=135 Identities=13% Similarity=0.194 Sum_probs=107.3
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
.+.|.+++|||+|++||+++.||+|++|+... +..... +.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~---~~----------------------------------- 124 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD---SK----------------------------------- 124 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC---CS-----------------------------------
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc---CC-----------------------------------
Confidence 57899999999999999999999999998532 111100 00
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-------eEEEe----ccCCccEEEEEEcCCCCEE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-------CIKTL----ESHTRYVTCCTFSCDDSLL 175 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-------~~~~~----~~~~~~V~~~~~s~~~~~l 175 (222)
..+ ....|.+++|+|+|+++++|+.||+|+|||+++++ .+.++ .+|...|.+++|+|+| +
T Consensus 125 -----~~~--~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L 195 (588)
T 2j04_A 125 -----GNL--SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L 195 (588)
T ss_dssp -----SCS--TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E
T ss_pred -----Ccc--ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E
Confidence 000 12358899999999999999999999999998875 35666 6788899999999999 8
Q ss_pred EEeeCCCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 176 ASGSNDKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 176 ~s~s~D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
++++.|+++++||+. ...+|+++ +++|++||+.+.
T Consensus 196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTT
T ss_pred EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCC
Confidence 888999999999972 13577776 699999999844
No 84
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.87 E-value=7.5e-21 Score=159.75 Aligned_cols=183 Identities=26% Similarity=0.414 Sum_probs=131.0
Q ss_pred ccceEEEEEcCCCC-eEEEecCCCeEEEEeCCCCce----EEee-ccCCCcceeeccceecCccCCcccce-eeeeeeee
Q psy16881 27 GSNMRCVRFSPDTR-LLATGGDDETVTVWRSDDLSL----IMET-NDRGHTQGRIEGWGRVPACPLCRTRV-FSTFVKQI 99 (222)
Q Consensus 27 ~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 99 (222)
.+.|.+++|+|+++ +|++|+.||+|++|++.+... .... ...++.. .+.. +.+.+.....+ .......+
T Consensus 181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-~v~~---v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-VVED---VAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-CEEE---EEECSSCTTEEEEEETTSEE
T ss_pred CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC-CEee---eEEeCCCCCEEEEEeCCCeE
Confidence 78899999999998 999999999999999986321 1000 0011211 1111 11222112222 22233345
Q ss_pred Eeeeeeeec--cCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC-CceEEEeccCCccEEEEEEcCCCC-E
Q psy16881 100 IPTRVGVYG--QDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDS-L 174 (222)
Q Consensus 100 ~~~~~~~~~--~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~~-~ 174 (222)
..++..... .....+..|...|++++|+|+++ ++++|+.||.|++||+++ .+.+..+..|...|.+++|+|+++ +
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 555543221 22334557899999999999987 799999999999999987 566788889999999999999985 7
Q ss_pred EEEeeCCCeEEEEeCC-------------------------------------CC-eEEEeeCCCcEEEEeCCCCcc
Q psy16881 175 LASGSNDKTVTIWDML-------------------------------------AT-LLASGSNDKTVTIWDMRGNLS 213 (222)
Q Consensus 175 l~s~s~D~~i~lwd~~-------------------------------------~~-~l~s~~~d~~i~iwd~~~~~~ 213 (222)
|++++.|+.|++||+. .. ++++++.|+.|++|+++....
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 9999999999999973 13 799999999999999985543
No 85
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.87 E-value=6.4e-22 Score=164.55 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=108.4
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCc
Q psy16881 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE 112 (222)
Q Consensus 33 l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (222)
..+++++++|++|+.|++|+|||...+...... ...
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~--------------------------------------------~~~ 130 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQH--------------------------------------------VLG 130 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEE--------------------------------------------EEC
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceee--------------------------------------------eec
Confidence 344556778999999999999997654322110 001
Q ss_pred cccccCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCC-CEEEEeeCCCe
Q psy16881 113 TVGRHTSAVTSVRFNH--------KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD-SLLASGSNDKT 183 (222)
Q Consensus 113 ~~~~h~~~i~~l~~~~--------~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~s~s~D~~ 183 (222)
.+.+|...|++++|+| ++++|+||+.|++|+|||++++.++..+..|...|.+++|+|++ ++|++++.|++
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence 3467999999999987 78899999999999999998888888888899999999999987 48999999999
Q ss_pred EEEEeCC-------------------------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 184 VTIWDML-------------------------------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 184 i~lwd~~-------------------------------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
|++||+. ...+++++.|+++++||++
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence 9999973 2468999999999999987
No 86
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.3e-21 Score=157.04 Aligned_cols=179 Identities=14% Similarity=0.284 Sum_probs=130.9
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCC----CceEEeeccCCCcceeeccceecCccCC-cccceeeeeeeeeE
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDD----LSLIMETNDRGHTQGRIEGWGRVPACPL-CRTRVFSTFVKQII 100 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 100 (222)
+.+.|.+++|+|++++|++|+.||+|++|++.+ ....... .+|... +.. +.+.+. ....+.......+.
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~--~~h~~~-v~~---~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF--SNHSSS-VKT---VKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC--CCSSSC-CCE---EEECSSSTTBEEEECSSSCEE
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc--cCCccc-eEE---EEEcCCCCCEEEEEcCCCeEE
Confidence 467899999999999999999999999999986 2233333 222211 111 112222 12222223333455
Q ss_pred eeeeeeec------c--CCccccccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEeccC------CccEEE
Q psy16881 101 PTRVGVYG------Q--DSETVGRHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLESH------TRYVTC 165 (222)
Q Consensus 101 ~~~~~~~~------~--~~~~~~~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~------~~~V~~ 165 (222)
.|+..... . .......|...|.+++|+|+ ++++++++.||.|++||+++++.+..+..+ ...|.+
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence 55432111 0 11223568899999999999 689999999999999999999988888776 788999
Q ss_pred EEEcCCC-CEEEEeeCCC---eEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 166 CTFSCDD-SLLASGSNDK---TVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 166 ~~~s~~~-~~l~s~s~D~---~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++|+|++ .+|++++.|+ .|++||+. ..++++++.|+.|++||++.
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 9999997 6899999998 99999973 24699999999999999973
No 87
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.87 E-value=2.2e-20 Score=162.03 Aligned_cols=175 Identities=19% Similarity=0.280 Sum_probs=130.4
Q ss_pred ccc-eEEEEEcC--CCCeEEEecCCCeEEEEeCCCC--------ceEEeeccCCCcceeeccceecCccCCcccceeeee
Q psy16881 27 GSN-MRCVRFSP--DTRLLATGGDDETVTVWRSDDL--------SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF 95 (222)
Q Consensus 27 ~~~-v~~l~~sp--dg~~l~tgs~Dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (222)
.+. |.+++|+| ++++|++|+.||+|++|++.++ ....... .+.. .+.. +.+.+.....+....
T Consensus 63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~---~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ--VLAG-PISD---ISWDFEGRRLCVVGE 136 (615)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE--CCSS-CEEE---EEECTTSSEEEEEEC
T ss_pred CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh--cccc-cEEE---EEEeCCCCEEEEecc
Confidence 778 99999999 9999999999999999999643 2332221 1111 1111 122222222222221
Q ss_pred e----eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCc---cEEEEE
Q psy16881 96 V----KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTR---YVTCCT 167 (222)
Q Consensus 96 ~----~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---~V~~~~ 167 (222)
. ..+..++. ......+.+|...|.+++|+|+++ .+++++.|+.|++||+++++++..+.+|.. .|.+++
T Consensus 137 ~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 137 GRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp CSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred CCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence 1 12333321 112234567999999999999997 899999999999999999999999999999 999999
Q ss_pred EcCC-CCEEEEeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 168 FSCD-DSLLASGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 168 ~s~~-~~~l~s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
|+|+ +++|++++.|+.|++||+. ..++++++.|+.|++||++.
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCC
Confidence 9999 9999999999999999963 23689999999999999983
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.87 E-value=2.4e-20 Score=174.45 Aligned_cols=162 Identities=28% Similarity=0.412 Sum_probs=124.9
Q ss_pred EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee
Q psy16881 18 LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK 97 (222)
Q Consensus 18 ~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (222)
..+.+| .+.|.+++|+|+|++|++|+.||+|++||+.++..+.... +|... +.. +.+++.....+......
T Consensus 609 ~~~~~h---~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~-v~~---~~~s~~~~~l~s~~~d~ 679 (1249)
T 3sfz_A 609 LVVRPH---TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDE-VLC---CAFSSDDSYIATCSADK 679 (1249)
T ss_dssp EEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSC-EEE---EEECTTSSEEEEEETTS
T ss_pred EEEecc---cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCC-EEE---EEEecCCCEEEEEeCCC
Confidence 344555 7889999999999999999999999999999888776653 33222 111 22233333333333344
Q ss_pred eeEeeeeeeeccCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEE
Q psy16881 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL 175 (222)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 175 (222)
.+..|+.. .+.....+.+|...|.+++|+++ +.++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|
T Consensus 680 ~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 680 KVKIWDSA-TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELL 758 (1249)
T ss_dssp EEEEEETT-TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eEEEEECC-CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEE
Confidence 55555532 12222345679999999999984 4689999999999999999999999999999999999999999999
Q ss_pred EEeeCCCeEEEEeC
Q psy16881 176 ASGSNDKTVTIWDM 189 (222)
Q Consensus 176 ~s~s~D~~i~lwd~ 189 (222)
++++.|+.|++||+
T Consensus 759 ~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 759 ASCSADGTLRLWDV 772 (1249)
T ss_dssp EEEESSSEEEEEEG
T ss_pred EEEECCCeEEEEeC
Confidence 99999999999996
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.87 E-value=2.3e-20 Score=157.44 Aligned_cols=185 Identities=24% Similarity=0.389 Sum_probs=127.3
Q ss_pred eccceEEEEEc--CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCccee-------------ecccee--cCccCCcc
Q psy16881 26 IGSNMRCVRFS--PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGR-------------IEGWGR--VPACPLCR 88 (222)
Q Consensus 26 ~~~~v~~l~~s--pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~~ 88 (222)
|.+.|.+++|+ +++++|++|+.||+|++||+.+................ ...... ........
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 281 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETT
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCC
Confidence 47889999998 67899999999999999999876543221110000000 000000 00000011
Q ss_pred cceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE
Q psy16881 89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF 168 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~ 168 (222)
..+.......+..++.. .......+.+|...|.+++|+++++++++|+.||.|++||+++++++..+.+|...|.++.|
T Consensus 282 ~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360 (464)
T ss_dssp EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECC-CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence 11111222233333321 11122345678999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881 169 SCDDSLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR-GNLSV 214 (222)
Q Consensus 169 s~~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~-~~~~~ 214 (222)
+ +.+|++++.|+.|++||+. ..++++++ |+.|++||++ +++..
T Consensus 361 ~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 361 S--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp C--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred c--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 7 6899999999999999984 35678777 8999999998 55544
No 90
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.7e-21 Score=170.74 Aligned_cols=181 Identities=23% Similarity=0.318 Sum_probs=132.9
Q ss_pred eccceEEEEEcCC--CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeEe
Q psy16881 26 IGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQIIP 101 (222)
Q Consensus 26 ~~~~v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 101 (222)
|.+.|.+++|+|+ +++|++|+.||+|++||+.++.........++... +.. +.+.+. ....+.......+..
T Consensus 52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-V~~---v~~sp~~~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-VNS---VQWAPHEYGPLLLVASSDGKVSV 127 (753)
T ss_dssp CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-EEE---EEECCGGGCSEEEEEETTSEEEE
T ss_pred CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-eEE---EEECCCCCCCEEEEEeCCCcEEE
Confidence 4788999999988 99999999999999999987752222111222211 111 112222 122223333344555
Q ss_pred eeeeeec-cCCccccccCCCEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCC----ceEEEeccCCccE
Q psy16881 102 TRVGVYG-QDSETVGRHTSAVTSVRFNH-------------KSSLLVSGSVDKTVKLWDVPSL----TCIKTLESHTRYV 163 (222)
Q Consensus 102 ~~~~~~~-~~~~~~~~h~~~i~~l~~~~-------------~~~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~~~~V 163 (222)
++..... .....+.+|...|.++.|+| +++++++|+.||.|++||++++ .....+.+|...|
T Consensus 128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (753)
T ss_dssp EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence 5532221 12234567899999999999 4889999999999999999866 4567788999999
Q ss_pred EEEEEcCC---CCEEEEeeCCCeEEEEeCC----------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 164 TCCTFSCD---DSLLASGSNDKTVTIWDML----------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 164 ~~~~~s~~---~~~l~s~s~D~~i~lwd~~----------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
.+++|+|+ +++|++++.|+.|++||+. +.++++++.|+.|++||++.
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999 8999999999999999973 24699999999999999973
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.4e-20 Score=147.77 Aligned_cols=181 Identities=25% Similarity=0.293 Sum_probs=130.6
Q ss_pred EEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeee
Q psy16881 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQ 98 (222)
Q Consensus 19 ~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (222)
++.+| .+.|.+++| |++++|++|+.||.|++|++.+......... +. ..+.. +.+.+.....+.......
T Consensus 13 ~l~~h---~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~--~~-~~v~~---~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 13 TLKGH---DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT--GQ-GFLNS---VCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp EECCC---SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE--CS-SCEEE---EEEETTTTEEEEEETTSC
T ss_pred HhhCC---CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec--CC-ccEEE---EEECCCCCEEEEecCCCe
Confidence 34455 788999999 9999999999999999999987765544421 11 11111 112222222222333333
Q ss_pred eEeeeeeee--ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcC-CCCEE
Q psy16881 99 IIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC-DDSLL 175 (222)
Q Consensus 99 ~~~~~~~~~--~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l 175 (222)
+..++.... ......+.+|...|.++.| +++++++++.||.|++|| .++.+..+..|...|.++.|++ +++.+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 443432211 1223455679999999999 478999999999999999 5677788889999999999988 89999
Q ss_pred EEeeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 176 ASGSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 176 ~s~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
++++.|+.|++||.. ...+++++.|+.|++||++ ++..
T Consensus 159 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp EEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh
Confidence 999999999999963 2348999999999999998 4443
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.87 E-value=3.6e-20 Score=150.24 Aligned_cols=180 Identities=14% Similarity=0.214 Sum_probs=126.3
Q ss_pred eccceEEEEEcCC---CCeEEEecCCCeEEEEeCCCCc-eEEeeccCCCcceeeccceec---CccCCcccceeeeeeee
Q psy16881 26 IGSNMRCVRFSPD---TRLLATGGDDETVTVWRSDDLS-LIMETNDRGHTQGRIEGWGRV---PACPLCRTRVFSTFVKQ 98 (222)
Q Consensus 26 ~~~~v~~l~~spd---g~~l~tgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 98 (222)
|...|.+++|+|+ +++|++|+.||+|++|++.+.. ....+. ++... +...... .+.+.....+.......
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~-v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK--GHKEI-INAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--CCSSC-EEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--ecccc-eEEEeeccccccCCCccEEEEEeCCCe
Confidence 4788999999999 6999999999999999998776 444432 22211 1111111 11222222223333334
Q ss_pred eEeeeeeeeccCCcccccc----CCCEEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcC
Q psy16881 99 IIPTRVGVYGQDSETVGRH----TSAVTSVR----FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC 170 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h----~~~i~~l~----~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~ 170 (222)
+..|+..........+..| ...|.++. |+++++++++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 5555432211122223223 33788888 678999999999999999999998877544 56788999999999
Q ss_pred ---CCCEEEEeeCCCeEEEEeCC----------------------------CC-eEEEeeCCCcEEEEeCC
Q psy16881 171 ---DDSLLASGSNDKTVTIWDML----------------------------AT-LLASGSNDKTVTIWDMR 209 (222)
Q Consensus 171 ---~~~~l~s~s~D~~i~lwd~~----------------------------~~-~l~s~~~d~~i~iwd~~ 209 (222)
++.+|++++.|+.|++||+. .. ++++++.|+.|++||++
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 99999999999999999973 12 79999999999999987
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.87 E-value=3.9e-20 Score=151.77 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=74.7
Q ss_pred CccccccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceEEEec-c-CCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881 111 SETVGRHTSAVTSVRFNHKSSLLVSGSVDKT-VKLWDVPSLTCIKTLE-S-HTRYVTCCTFSCDDSLLASGSNDKTVTIW 187 (222)
Q Consensus 111 ~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~-I~iwd~~~~~~~~~~~-~-~~~~V~~~~~s~~~~~l~s~s~D~~i~lw 187 (222)
...+.+|...|++++|+|++++|++|+.|++ |+|||+++++++..+. + |...|.+++|+|++++|++++.|++|++|
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 3456789999999999999999999999998 9999999999999998 5 99999999999999999999999999999
Q ss_pred eCC
Q psy16881 188 DML 190 (222)
Q Consensus 188 d~~ 190 (222)
|+.
T Consensus 268 ~~~ 270 (355)
T 3vu4_A 268 EIF 270 (355)
T ss_dssp ESS
T ss_pred Ecc
Confidence 973
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.87 E-value=1.3e-20 Score=168.83 Aligned_cols=179 Identities=23% Similarity=0.322 Sum_probs=134.9
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|++++|+|++++|++|+.||+|++|++.++....... ++... +.. +.+.+.....+.......+..|+..
T Consensus 54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~-v~~---~~~s~~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDY-IRS---IAVHPTKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECSSSSEEEEEETTSEEEEEEGG
T ss_pred CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCC-EEE---EEEeCCCCEEEEEcCCCEEEEEECC
Confidence 47889999999999999999999999999999887766553 22211 111 1222222223333333345555432
Q ss_pred eeccCCccccccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-ccEEEEEEcC--CCCEEEEeeCC
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSC--DDSLLASGSND 181 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~V~~~~~s~--~~~~l~s~s~D 181 (222)
........+.+|...|.+++|+| +++.+++++.||.|++||+++++....+..+. ..|.+++|+| ++++|++++.|
T Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 11122234567899999999999 78899999999999999998877766665554 7899999999 99999999999
Q ss_pred CeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 182 KTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 182 ~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+.|++||+. ..++++++.|+.|++||+.+
T Consensus 208 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 999999973 35799999999999999973
No 95
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.2e-20 Score=152.87 Aligned_cols=179 Identities=21% Similarity=0.270 Sum_probs=123.1
Q ss_pred ccceEEEEEcCCCC-eEEEecCCCeEEEEeC----CCCce------EEeecc--CCC-----cceeeccceecCccCCcc
Q psy16881 27 GSNMRCVRFSPDTR-LLATGGDDETVTVWRS----DDLSL------IMETND--RGH-----TQGRIEGWGRVPACPLCR 88 (222)
Q Consensus 27 ~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~----~~~~~------~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ 88 (222)
.+.|.+++|+|+|+ +|++|+.||.|++|++ .++.. ...... .++ ....+.. +.+.+...
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~ 121 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC---LAWSHDGN 121 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE---EEECTTSS
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE---EEEcCCCC
Confidence 57799999999999 9999999999999999 77662 222211 011 1111111 11222222
Q ss_pred cceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-------------
Q psy16881 89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT------------- 155 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~------------- 155 (222)
..+.......+..|+ ........+..|...|.+++|+|+++++++++.|+.|++||+++++.+..
T Consensus 122 ~l~~~~~dg~i~i~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 122 SIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEEETTSCEEEEE--TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEEeCCCeEEEEe--CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 222223333344443 11222234567899999999999999999999999999999987655432
Q ss_pred -------------------------------------------eccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC--
Q psy16881 156 -------------------------------------------LESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML-- 190 (222)
Q Consensus 156 -------------------------------------------~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~-- 190 (222)
+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 33567778999999999999999999999999973
Q ss_pred --------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 191 --------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 --------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
..++++++.|+.|++||++.
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTT
T ss_pred ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCC
Confidence 12788999999999999873
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.86 E-value=5.4e-20 Score=151.57 Aligned_cols=179 Identities=21% Similarity=0.314 Sum_probs=128.5
Q ss_pred eccceEEEEEcC-CCCeEEEecCCCeEEEEeCCCCceEEeeccC-----------CCcceeeccceecCccCCcc-ccee
Q psy16881 26 IGSNMRCVRFSP-DTRLLATGGDDETVTVWRSDDLSLIMETNDR-----------GHTQGRIEGWGRVPACPLCR-TRVF 92 (222)
Q Consensus 26 ~~~~v~~l~~sp-dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~ 92 (222)
|.+.|.+++|+| ++++|++|+.||+|++|++.+.......... ++. ..+.. +.+.+... ..+.
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~~~~~~~~l~s 117 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR-YSVET---VQWYPHDTGMFTS 117 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS-SCEEE---EEECTTCTTCEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC-CcEEE---EEEccCCCcEEEE
Confidence 478999999999 9999999999999999999876543222100 111 11111 11222111 1222
Q ss_pred eeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881 93 STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS---SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS 169 (222)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~---~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s 169 (222)
......+..|+... ...... ..+...+.++.+++.+ .++++++.|+.|++||+++++.+..+.+|...|.+++|+
T Consensus 118 ~~~d~~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~ 195 (408)
T 4a11_B 118 SSFDKTLKVWDTNT-LQTADV-FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195 (408)
T ss_dssp EETTSEEEEEETTT-TEEEEE-EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred EeCCCeEEEeeCCC-Ccccee-ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence 22233444444211 011111 2367788999998754 499999999999999999999999999999999999999
Q ss_pred CCCC-EEEEeeCCCeEEEEeCC---------------------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 170 CDDS-LLASGSNDKTVTIWDML---------------------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 170 ~~~~-~l~s~s~D~~i~lwd~~---------------------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
|+++ +|++++.|+.|++||+. ..++++++.|+.|++||++
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 9998 58999999999999972 2479999999999999998
Q ss_pred C
Q psy16881 210 G 210 (222)
Q Consensus 210 ~ 210 (222)
.
T Consensus 276 ~ 276 (408)
T 4a11_B 276 N 276 (408)
T ss_dssp T
T ss_pred C
Confidence 4
No 97
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=1.8e-20 Score=151.83 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=96.8
Q ss_pred ccceEEEEEcC---CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 27 GSNMRCVRFSP---DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 27 ~~~v~~l~~sp---dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
+..++.++|+| ++++|++|+.|++|+|||+++++++.++.. +.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g--~~-------------------------------- 223 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI--DD-------------------------------- 223 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC--------------------------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC--CC--------------------------------
Confidence 56677777877 668899999999999999998877765421 00
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCE------------EEEEeCCCcEEEEeCCCCceEEEe-----ccCCccEEEE
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSL------------LVSGSVDKTVKLWDVPSLTCIKTL-----ESHTRYVTCC 166 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~------------l~sg~~dg~I~iwd~~~~~~~~~~-----~~~~~~V~~~ 166 (222)
.+...+.+++|+|++++ +++|+.|++|++||.++++++..+ .+|...+.+.
T Consensus 224 ------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg 291 (356)
T 2w18_A 224 ------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG 291 (356)
T ss_dssp ---------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE
T ss_pred ------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc
Confidence 01123444555555544 478999999999999999887654 3666554444
Q ss_pred EEcCCCCEEEEeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 167 TFSCDDSLLASGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 167 ~~s~~~~~l~s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
.+ .+..+++++.|++|+|||+. +.+|+||+.|++|||||++
T Consensus 292 ~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 292 DV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred cc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 44 48899999999999999984 3579999999999999963
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6e-21 Score=164.52 Aligned_cols=157 Identities=11% Similarity=0.025 Sum_probs=109.9
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceE-EeeccCCCcceeeccceecCccCCc-ccceeeeeeeeeEeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI-METNDRGHTQGRIEGWGRVPACPLC-RTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 104 (222)
.+.|.+++|+|+ ..|++|+.||+|++||+.++... ... .+|... +.... ..+.... ...+.+.....+..|+.
T Consensus 266 ~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~--~~H~~~-V~sv~-~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 266 DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYD--QVHDSY-ILSVS-TAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEE--ECSSSC-EEEEE-EECCTTSCCEEEEEETTSEEEEECG
T ss_pred CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEe--eccccc-EEEEE-EEcCCCCCeEEEEeccCCeEEEEEC
Confidence 688999999986 48999999999999999865321 112 222221 11110 0111111 12233334445666653
Q ss_pred eeeccCCccccccCC--CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881 105 GVYGQDSETVGRHTS--AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK 182 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~--~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~ 182 (222)
... .....+.+|.. .|.+++|+|+++.+++++.|++|++||++++.++..+.+|...|++++|+|+++.|++|+.|+
T Consensus 341 ~~~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 341 KDI-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp GGH-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred CCC-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 211 11112334442 478899999999999999999999999999988888889999999999999999999999999
Q ss_pred eEEEEeC
Q psy16881 183 TVTIWDM 189 (222)
Q Consensus 183 ~i~lwd~ 189 (222)
+|++||+
T Consensus 420 tv~lwd~ 426 (524)
T 2j04_B 420 SLIITNA 426 (524)
T ss_dssp EEECCBS
T ss_pred EEEEEec
Confidence 9999874
No 99
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.1e-21 Score=179.01 Aligned_cols=143 Identities=11% Similarity=0.098 Sum_probs=113.2
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
...+..++|+|++++|++|+.|++|++||+.++... ....+. . ...
T Consensus 435 ~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~--------~~~~~~-----------------~--------~l~- 480 (902)
T 2oaj_A 435 VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ--------DNASFE-----------------V--------NLS- 480 (902)
T ss_dssp BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT--------TTBCEE-----------------E--------EHH-
T ss_pred cCCCCcccccccCcEEEEecCCCcEEEEECCCcccc--------CCceEE-----------------e--------ech-
Confidence 345667889999999999999999999998754210 000000 0 000
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------------------------------
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL------------------------------------ 150 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~------------------------------------ 150 (222)
...-.+|...|.+++|+|++++|++|+.||+|+|||+.++
T Consensus 481 ----~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (902)
T 2oaj_A 481 ----RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDR 556 (902)
T ss_dssp ----HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGG
T ss_pred ----hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccccc
Confidence 0001258899999999999999999999999999998754
Q ss_pred ---------ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC------------------------------
Q psy16881 151 ---------TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA------------------------------ 191 (222)
Q Consensus 151 ---------~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~------------------------------ 191 (222)
+++..+.+|...|++++|||+| +||+|+.|++|++||+.+
T Consensus 557 ~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~ 635 (902)
T 2oaj_A 557 APTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEY 635 (902)
T ss_dssp CCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEEC
T ss_pred CCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEec
Confidence 2467788899999999999999 999999999999999732
Q ss_pred -------CeEEEeeCCCcEEEEeC
Q psy16881 192 -------TLLASGSNDKTVTIWDM 208 (222)
Q Consensus 192 -------~~l~s~~~d~~i~iwd~ 208 (222)
..|++|+.|++|++||+
T Consensus 636 ~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 636 GDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCCCcceEEEEEecCCcEEEEEE
Confidence 36889999999999998
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1e-20 Score=169.54 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=130.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCC--ceEEeeccCCCcceeeccceecCccCC--cccceeeeeeeeeEee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDL--SLIMETNDRGHTQGRIEGWGRVPACPL--CRTRVFSTFVKQIIPT 102 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 102 (222)
.+.|++++|+|+|++|++|+.||+|++|++.+. ...... .+|... +.. +.+... ....+.......+..|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l--~~h~~~-V~~---l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL--TGHEGP-VWR---VDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE--CCCSSC-EEE---EEECCTTSCSEEEEEETTSCEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec--cCCcCc-eEE---EEecCCCCCCEEEEEeCCCeEEEE
Confidence 788999999999999999999999999998743 333333 233221 111 111111 1222233333445555
Q ss_pred eeeeec-cCCccccccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcC-------
Q psy16881 103 RVGVYG-QDSETVGRHTSAVTSVRFNHK--SSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSC------- 170 (222)
Q Consensus 103 ~~~~~~-~~~~~~~~h~~~i~~l~~~~~--~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~------- 170 (222)
+..... .....+..|...|.+++|+|+ ++++++|+.||.|++||++++ .....+.+|...|.++.|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 532110 022344568999999999999 899999999999999999876 33456678999999999999
Q ss_pred ------CCCEEEEeeCCCeEEEEeCC------------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 171 ------DDSLLASGSNDKTVTIWDML------------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 171 ------~~~~l~s~s~D~~i~lwd~~------------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++.+|++|+.||.|++||+. ..++++++.|+.|++||++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 58999999999999999862 34699999999999999975
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.86 E-value=8.9e-20 Score=153.17 Aligned_cols=170 Identities=26% Similarity=0.486 Sum_probs=127.7
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|.+++| ++++|++|+.||+|++||+.+++...... ++... +.. +.+. ....+.......+..++..
T Consensus 172 h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~-v~~---l~~~--~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 172 HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEA-VLH---LRFN--NGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSC-EEE---EECC--TTEEEEEETTSCEEEEECS
T ss_pred CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCc-EEE---EEEc--CCEEEEeeCCCcEEEEeCC
Confidence 3788999888 78999999999999999999888776653 22221 111 1111 1122222233344444432
Q ss_pred eeccC--CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881 106 VYGQD--SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKT 183 (222)
Q Consensus 106 ~~~~~--~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~ 183 (222)
..... ...+.+|...|.++++ +++++++|+.||.|++||+++++++..+.+|...|.++.++ ++++++|+.|+.
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~ 317 (435)
T 1p22_A 242 SPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT 317 (435)
T ss_dssp SSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred CCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCe
Confidence 11111 1345678999999999 67899999999999999999999999999999999999984 789999999999
Q ss_pred EEEEeCC---------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 184 VTIWDML---------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 184 i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
|++||+. ..++++|+.|+.|++||++
T Consensus 318 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 318 IRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred EEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECC
Confidence 9999984 3579999999999999986
No 102
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.86 E-value=7.1e-21 Score=158.27 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=108.5
Q ss_pred eeccceEEEEEcC--------CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881 25 HIGSNMRCVRFSP--------DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV 96 (222)
Q Consensus 25 ~~~~~v~~l~~sp--------dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (222)
.|.+.|.+|+|+| |+++||+||.|++|+|||+.+......
T Consensus 134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-------------------------------- 181 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-------------------------------- 181 (393)
T ss_dssp SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------------------------------
T ss_pred CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------------------------------
Confidence 3578899999998 899999999999999999764322211
Q ss_pred eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEe-------------------
Q psy16881 97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTL------------------- 156 (222)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~------------------- 156 (222)
+.+|...|.+++|+|++. +|++|+.|++|++||+++++.....
T Consensus 182 -----------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 182 -----------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp -----------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred -----------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 124778899999999874 8999999999999999876543221
Q ss_pred ------ccCCccEEEEEEc-CCCCEEEEeeCCCeEEEEeCC---------------------------------------
Q psy16881 157 ------ESHTRYVTCCTFS-CDDSLLASGSNDKTVTIWDML--------------------------------------- 190 (222)
Q Consensus 157 ------~~~~~~V~~~~~s-~~~~~l~s~s~D~~i~lwd~~--------------------------------------- 190 (222)
.+|...|.++.|+ +++..|++++.|+++++||+.
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 3566778888886 799999999999999999973
Q ss_pred ----CCeEEEeeCCCcEEEEeCCC
Q psy16881 191 ----ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 ----~~~l~s~~~d~~i~iwd~~~ 210 (222)
..++++|+.|++|++||+..
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~ 348 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYE 348 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTC
T ss_pred cCCCCEEEEEECCCCEEEEEECCC
Confidence 12577888999999999974
No 103
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.86 E-value=4.5e-20 Score=152.18 Aligned_cols=185 Identities=16% Similarity=0.170 Sum_probs=133.0
Q ss_pred ccceEEEEEcCC----C---CeEEEecCCCeEEEEeCCCCce-----EEeeccCCCc----ceeeccceecCcc-CCccc
Q psy16881 27 GSNMRCVRFSPD----T---RLLATGGDDETVTVWRSDDLSL-----IMETNDRGHT----QGRIEGWGRVPAC-PLCRT 89 (222)
Q Consensus 27 ~~~v~~l~~spd----g---~~l~tgs~Dg~i~iwd~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~ 89 (222)
...|.+++|+|+ + ++|++++.||.|++|++.+... ..... .+. ...+......+.. +....
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC--CSCTTGGGSCEEEEEEECCC----CE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec--ccccccCCCcEEEEEEeeccCCCCce
Confidence 788999999999 9 9999999999999999887664 44332 221 1222211111000 22222
Q ss_pred -ceeeeeeeeeEeeeeeee-----ccCCc-----cc-------cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q psy16881 90 -RVFSTFVKQIIPTRVGVY-----GQDSE-----TV-------GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151 (222)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~-----~~~~~-----~~-------~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~ 151 (222)
.+.......+..|+.... ..... .+ ..|...|.+++|+|++ ++++++.||.|++||+++++
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence 222233334555543320 11222 33 3478899999999999 99999999999999999999
Q ss_pred eEEEecc---C---CccEEEEEEcCCCCEEEEeeCC---CeEEEEeCC--------------------------------
Q psy16881 152 CIKTLES---H---TRYVTCCTFSCDDSLLASGSND---KTVTIWDML-------------------------------- 190 (222)
Q Consensus 152 ~~~~~~~---~---~~~V~~~~~s~~~~~l~s~s~D---~~i~lwd~~-------------------------------- 190 (222)
.+..+.. | ...|.+++|+|++++|++++.| +.|++||+.
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 9999988 8 8999999999999999999999 999999972
Q ss_pred ----CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881 191 ----ATLLASGSNDKTVTIWDMR-GNLSV 214 (222)
Q Consensus 191 ----~~~l~s~~~d~~i~iwd~~-~~~~~ 214 (222)
..+|++++.|+.|++||++ .+...
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence 2469999999999999997 43433
No 104
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.86 E-value=1.6e-20 Score=154.88 Aligned_cols=178 Identities=14% Similarity=0.161 Sum_probs=126.2
Q ss_pred ccceEEEEEc----CCCCe-EEEecCCCeEEEEeCCC------CceEE-----eecc-----CCCcceeeccceecCccC
Q psy16881 27 GSNMRCVRFS----PDTRL-LATGGDDETVTVWRSDD------LSLIM-----ETND-----RGHTQGRIEGWGRVPACP 85 (222)
Q Consensus 27 ~~~v~~l~~s----pdg~~-l~tgs~Dg~i~iwd~~~------~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~ 85 (222)
...|.+++|+ |++++ |++++.||.|++||+.+ ...+. .+.. ..+ ...+.. +.+.+
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~---~~~~~ 196 (397)
T 1sq9_A 121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP-SQFATS---VDISE 196 (397)
T ss_dssp GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS-CCCCCE---EEECT
T ss_pred CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCC-CCCceE---EEECC
Confidence 4889999999 99999 99999999999999886 43322 2110 000 111111 11112
Q ss_pred CcccceeeeeeeeeEeeeeeeeccCCccccc---c---CCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEe
Q psy16881 86 LCRTRVFSTFVKQIIPTRVGVYGQDSETVGR---H---TSAVTSVRFNHKSSLLVSGSVD---KTVKLWDVPSLTCIKTL 156 (222)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~i~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~~~~~~~ 156 (222)
.. ..+.......+..++... ......+.. | ...|.+++|+|++++|++++.| +.|++||+++++.+..+
T Consensus 197 ~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~ 274 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 274 (397)
T ss_dssp TS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred Cc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence 22 222222223344443211 111223445 7 8899999999999999999999 99999999999999999
Q ss_pred cc-------------CCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC---------------------------------
Q psy16881 157 ES-------------HTRYVTCCTFSCDDSLLASGSNDKTVTIWDML--------------------------------- 190 (222)
Q Consensus 157 ~~-------------~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~--------------------------------- 190 (222)
.+ |...|.+++|+|++++|++++.|+.|++||+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 354 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 354 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC
Confidence 88 99999999999999999999999999999962
Q ss_pred -----------C----------CeEEEeeCCCcEEEEeCCC
Q psy16881 191 -----------A----------TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 -----------~----------~~l~s~~~d~~i~iwd~~~ 210 (222)
. .++++++.|+.|++||+++
T Consensus 355 ~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 355 PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 1 3799999999999999863
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.5e-20 Score=150.96 Aligned_cols=165 Identities=11% Similarity=0.093 Sum_probs=114.8
Q ss_pred EcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee----eec-c
Q psy16881 35 FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG----VYG-Q 109 (222)
Q Consensus 35 ~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~ 109 (222)
+.+++++|++|+.||+|++||+.+++.+..... ..+.. +...+. .+.......+..|... .+. .
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-----~~v~~---~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITT-----PNPRT---GGEHPA---IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE-----ECCCT---TCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEec-----CCcee---eeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence 446788999999999999999998876655431 11111 111111 1222222233333211 011 1
Q ss_pred CCccc----cccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCC
Q psy16881 110 DSETV----GRHTSAVTSVRFNH--KSSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDK 182 (222)
Q Consensus 110 ~~~~~----~~h~~~i~~l~~~~--~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~ 182 (222)
....+ .+|...|.+++|+| +++++++++.||.|++||+++++++..... |...|.+++|+|++.+|++|+.|+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 11111 14568899999999 999999999999999999999888766543 455799999999999999999999
Q ss_pred eEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 183 TVTIWDML-------------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 183 ~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
.|++||+. ..+|++++ |+.|++||++..
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence 99999974 34688888 449999999843
No 106
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.85 E-value=1e-20 Score=153.34 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=111.4
Q ss_pred ccceEEEEEcCC----CCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881 27 GSNMRCVRFSPD----TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT 102 (222)
Q Consensus 27 ~~~v~~l~~spd----g~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (222)
...|+.|+|+|| ++.+++++.+ +++|.+.+++.+.... .++ ...+..|...+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~-~g~-d~~V~~~~~s~-------------------- 166 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG-TLS-DQQVEVMTFAE-------------------- 166 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEES-SST-TCEEEEEEECT--------------------
T ss_pred ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecc-cCC-CCcEEEEEECC--------------------
Confidence 356999999999 9999998854 7889988776665431 111 11122111100
Q ss_pred eeeeeccCCccccccCCCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc---cEEEEEEcCCCCEE-
Q psy16881 103 RVGVYGQDSETVGRHTSAVTSVRFNH---KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR---YVTCCTFSCDDSLL- 175 (222)
Q Consensus 103 ~~~~~~~~~~~~~~h~~~i~~l~~~~---~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---~V~~~~~s~~~~~l- 175 (222)
.+........|...++.++|++ ++..+++++.|++|||||+++++++.++.+|.. .+.+++|+|+|.++
T Consensus 167 ----dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv 242 (356)
T 2w18_A 167 ----DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI 242 (356)
T ss_dssp ----TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred ----CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence 0111112335788888888888 678999999999999999999999999987543 56778999999876
Q ss_pred -----------EEeeCCCeEEEEeCCCC--------------------------eEEEeeCCCcEEEEeCC-CCccccC
Q psy16881 176 -----------ASGSNDKTVTIWDMLAT--------------------------LLASGSNDKTVTIWDMR-GNLSVDV 216 (222)
Q Consensus 176 -----------~s~s~D~~i~lwd~~~~--------------------------~l~s~~~d~~i~iwd~~-~~~~~~~ 216 (222)
++|+.|++|++||..+. ++|+++.|++|+|||++ +++...+
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp EEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence 67889999999996422 46888999999999998 5554443
No 107
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-19 Score=144.46 Aligned_cols=171 Identities=22% Similarity=0.290 Sum_probs=120.9
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|...|.+++| ++++|++++.||+|++|| ......... .+... +......+ ..............+..++..
T Consensus 103 ~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~--~~~~~-v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~ 173 (313)
T 3odt_A 103 HQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ--AHNAS-VWDAKVVS--FSENKFLTASADKTIKLWQND 173 (313)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE--CCSSC-EEEEEEEE--TTTTEEEEEETTSCEEEEETT
T ss_pred cccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc--cCCCc-eeEEEEcc--CCCCEEEEEECCCCEEEEecC
Confidence 3788999999 678999999999999999 333333321 11111 11000000 011111222222233344311
Q ss_pred eeccCCccccc-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881 106 VYGQDSETVGR-HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTV 184 (222)
Q Consensus 106 ~~~~~~~~~~~-h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i 184 (222)
.....+.. |...|.+++|++++. +++++.||.|++||+++++.+..+.+|...|.+++|+|++ .|++++.|+.|
T Consensus 174 ---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v 248 (313)
T 3odt_A 174 ---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTV 248 (313)
T ss_dssp ---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEE
T ss_pred ---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEE
Confidence 11122233 788999999999888 9999999999999999999999999999999999999999 58899999999
Q ss_pred EEEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 185 TIWDML----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 185 ~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++||+. ...+++++.|+.|++||++.
T Consensus 249 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 249 RIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred EEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 999984 12377899999999999984
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.85 E-value=9e-20 Score=149.62 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=68.4
Q ss_pred CEEEE--EeCCCcEEEEeCCCCc----------------eEEEeccCCccEEEEEEcCCCCEEEEeeCCCe-EEEEeCC-
Q psy16881 131 SLLVS--GSVDKTVKLWDVPSLT----------------CIKTLESHTRYVTCCTFSCDDSLLASGSNDKT-VTIWDML- 190 (222)
Q Consensus 131 ~~l~s--g~~dg~I~iwd~~~~~----------------~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~-i~lwd~~- 190 (222)
++++. |+.||.|++||+++++ ++..+.+|...|.+++|+|++++|++++.|++ |++||+.
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 44444 6889999999998765 26778899999999999999999999999998 9999974
Q ss_pred ------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 191 ------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 ------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
..+|++++.|++|++||++.
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 35799999999999999973
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.84 E-value=5.1e-20 Score=148.78 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=115.9
Q ss_pred eeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 25 ~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
.|.+.|.+++|+|++++|++++.||+|++|++.+.......
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~--------------------------------------- 49 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL--------------------------------------- 49 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE---------------------------------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc---------------------------------------
Confidence 34788999999999999999999999999997643210000
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-CCCceEEEecc--CCccEEEEEEcCCCCEEEEeeC
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDV-PSLTCIKTLES--HTRYVTCCTFSCDDSLLASGSN 180 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~sg~~dg~I~iwd~-~~~~~~~~~~~--~~~~V~~~~~s~~~~~l~s~s~ 180 (222)
..+..|...|.+++|+|+++ ++++|+.||.|++||+ ++++. ..+.+ |...|.+++|+| +++|++++.
T Consensus 50 -------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~ 120 (342)
T 1yfq_A 50 -------LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASW 120 (342)
T ss_dssp -------EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEET
T ss_pred -------eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcC
Confidence 00124788999999999999 9999999999999999 77654 67788 999999999999 999999999
Q ss_pred CCeEEEEeCCC-----------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881 181 DKTVTIWDMLA-----------------------------TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 181 D~~i~lwd~~~-----------------------------~~l~s~~~d~~i~iwd~~~ 210 (222)
|+.|++||+.. ..+++++.|+.|++||++.
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 99999999642 2388999999999999986
No 110
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.84 E-value=1.4e-19 Score=169.37 Aligned_cols=177 Identities=24% Similarity=0.379 Sum_probs=129.7
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcc--cceeeeeeeeeEeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR--TRVFSTFVKQIIPTR 103 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 103 (222)
|.+.|.+++|+|+|++|++|+.||+|++||+.++..+..+. ++... +.. +.+.+... ..........+..|+
T Consensus 656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~-v~~---~~~~~~~~~~~l~sg~~d~~v~vwd 729 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQ-VNC---CHFTNKSNHLLLATGSNDFFLKLWD 729 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSC-EEE---EEECSSSSCCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCc-EEE---EEEecCCCceEEEEEeCCCeEEEEE
Confidence 47889999999999999999999999999999888776653 22211 111 11111111 111222223344454
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe---------------------------
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL--------------------------- 156 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~--------------------------- 156 (222)
... ......+.+|...|++++|+|+++++++++.||.|++||+++++....+
T Consensus 730 ~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 730 LNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp TTS-SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred CCC-cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 211 1122345679999999999999999999999999999998766543322
Q ss_pred ----------------------------ccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------
Q psy16881 157 ----------------------------ESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------------ 190 (222)
Q Consensus 157 ----------------------------~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------ 190 (222)
.+|...|.+++|+|+++++++++.|+.|++||+.
T Consensus 809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV 888 (1249)
T ss_dssp TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE
Confidence 1567788899999999999999999999999974
Q ss_pred -----CCeEEEeeCCCcEEEEeCC
Q psy16881 191 -----ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 191 -----~~~l~s~~~d~~i~iwd~~ 209 (222)
+..+++++.|+.|++||++
T Consensus 889 ~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 889 MFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEEHH
T ss_pred EECCCCCEEEEEeCCCeEEEEEcc
Confidence 3579999999999999975
No 111
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.84 E-value=2.6e-19 Score=148.77 Aligned_cols=135 Identities=23% Similarity=0.457 Sum_probs=113.9
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|.+++|+|++++|++|+.||+|++||+.+......
T Consensus 216 ~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----------------------------------------- 254 (401)
T 4aez_A 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT----------------------------------------- 254 (401)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-----------------------------------------
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-----------------------------------------
Confidence 378899999999999999999999999999875433221
Q ss_pred eeccCCccccccCCCEEEEEEcCCC-CEEEEEe--CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE--eeC
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKS-SLLVSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS--GSN 180 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s--~s~ 180 (222)
+..|...|.+++|+|++ .++++++ .|+.|++||+++++++..+. +...|.+++|+|+++.|++ |+.
T Consensus 255 --------~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 255 --------KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp --------ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTT
T ss_pred --------ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecC
Confidence 12477889999999977 5777765 79999999999999888876 5567999999999999999 448
Q ss_pred CCeEEEEeCC-------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 181 DKTVTIWDML-------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 181 D~~i~lwd~~-------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
|+.|++||+. ..++++++.|+.|++||+..
T Consensus 326 dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999999973 35799999999999999973
No 112
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.84 E-value=2.9e-19 Score=154.91 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=122.3
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeeeee
Q psy16881 29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVGVY 107 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 107 (222)
.+.+++|+|++++++++ .++.+++|+..+++.+......... .. +.+. ....+.... ...+..++....
T Consensus 408 ~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~--~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPG----SA---VSLS--QNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCE----EE---EEEC--SSEEEEEETTTSCEEEEETTEE
T ss_pred CceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeecccCCCc----eE---EEEc--CCEEEEeecCCCeEEEEECCCc
Confidence 46677888888777776 6778888887777766655321110 00 0000 111111111 222333332111
Q ss_pred ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcC----------CCCEEE
Q psy16881 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSC----------DDSLLA 176 (222)
Q Consensus 108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~----------~~~~l~ 176 (222)
......+..|...|++++|+|++++|++++.||.|++||+.+++++..+.+ |...|++++|+| ++++|+
T Consensus 478 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~ 557 (615)
T 1pgu_A 478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 557 (615)
T ss_dssp EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEE
Confidence 000023456899999999999999999999999999999999999988888 999999999999 999999
Q ss_pred EeeCCCeEEEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 177 SGSNDKTVTIWDML------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 177 s~s~D~~i~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+++.|+.|++||+. .. |++++.|+.|++||++.
T Consensus 558 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 558 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999999984 24 99999999999999874
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.84 E-value=4.6e-19 Score=148.82 Aligned_cols=178 Identities=27% Similarity=0.481 Sum_probs=129.2
Q ss_pred eeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE
Q psy16881 21 RGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII 100 (222)
Q Consensus 21 ~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (222)
..+.++...|.+++| ++++|++|+.||+|++||+.+++...... +|... +.... . .....+.+.....+.
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~-v~~l~---~--~~~~l~sg~~dg~i~ 196 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGS-VLCLQ---Y--DERVIITGSSDSTVR 196 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSC-EEEEE---C--CSSEEEEEETTSCEE
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--CCCCc-EEEEE---E--CCCEEEEEcCCCeEE
Confidence 344445667888766 89999999999999999999887776652 23221 11111 1 112222233333455
Q ss_pred eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE---EEeccCCccEEEEEEcCCCCEEEE
Q psy16881 101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI---KTLESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~---~~~~~~~~~V~~~~~s~~~~~l~s 177 (222)
.|+... +.....+.+|...|.+++|+ ++++++|+.||.|++||+++++.. ..+.+|...|.+++| ++++|++
T Consensus 197 vwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s 271 (435)
T 1p22_A 197 VWDVNT-GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS 271 (435)
T ss_dssp EEESSS-CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred EEECCC-CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEE
Confidence 554321 12223456789999999996 469999999999999999877654 667889999999998 6889999
Q ss_pred eeCCCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 178 GSNDKTVTIWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 178 ~s~D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
++.|+.|++||+. ..++++|+.|+.|++||++ +...
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 9999999999984 3579999999999999998 4443
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.84 E-value=1.5e-19 Score=145.21 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=71.0
Q ss_pred cccccCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC--------------------------------------
Q psy16881 113 TVGRHTSAVTSVRFNHKS----SLLVSGSVDKTVKLWDVPSL-------------------------------------- 150 (222)
Q Consensus 113 ~~~~h~~~i~~l~~~~~~----~~l~sg~~dg~I~iwd~~~~-------------------------------------- 150 (222)
.+.+|...|++++|+|++ ++|++++.||.|++||++++
T Consensus 209 ~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence 355689999999999998 89999999999999999764
Q ss_pred --------ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC
Q psy16881 151 --------TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA 191 (222)
Q Consensus 151 --------~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~ 191 (222)
+.+..+.+|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 289 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 289 ELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp --CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 56677888999999999999999999999999999999864
No 115
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.84 E-value=4.5e-19 Score=149.06 Aligned_cols=173 Identities=28% Similarity=0.463 Sum_probs=128.8
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|.+++|+ +++|++|+.||+|++||+.++....... ++... +..... .....+.......+..++..
T Consensus 158 h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~-v~~~~~-----~~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 158 HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY--GHTST-VRCMHL-----HEKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSC-EEEEEE-----ETTEEEEEETTSEEEEEESS
T ss_pred CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC--CCCCc-EEEEEe-----cCCEEEEEeCCCEEEEEECC
Confidence 47889999997 5799999999999999999887776553 22211 111110 01112222223344444422
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
. ......+.+|...|.++++ +++++++|+.||.|++||+++++++..+.+|...|.++.| ++.++++++.|+.|+
T Consensus 228 ~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 228 T-GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302 (445)
T ss_dssp S-CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred C-CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence 1 1122345678999999998 6788999999999999999999999999999999999999 789999999999999
Q ss_pred EEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 186 IWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 186 lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
+||+. ..++++++.|+.|++||++ ++..
T Consensus 303 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 303 VWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp EEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred EEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99984 3579999999999999997 4443
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6.6e-20 Score=157.24 Aligned_cols=162 Identities=11% Similarity=0.117 Sum_probs=113.0
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
+..-|.+|+|||||+++|+++.|++|+ +......+ .+|... +.. +.+.+.. ....+.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-----~gh~~~-v~~---V~FsPdg----------~~~~~~~~ 72 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-----NCNSKN-LFH---VKEFPLE----------FENKLDFE 72 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-----SSBGGG-TEE---EEEECCC----------CCCTTTTS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccccee-----cCCCcc-EEE---EEECCCC----------CcceEEEE
Confidence 456688999999999999999999999 65443322 122211 111 1111111 00011111
Q ss_pred eeccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc-----cEEEEEEcCCCCEEEEee
Q psy16881 106 VYGQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR-----YVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 106 ~~~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-----~V~~~~~s~~~~~l~s~s 179 (222)
. ......+. .|...|.+++|+|+|+.+++++.||.|++||... ++..+. |+. .|.+++|||+|++||+|+
T Consensus 73 ~-~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 73 L-AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp C-CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred e-CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 0 01111111 4578899999999999999999999999999543 666666 665 499999999999999999
Q ss_pred CCCeEEEEeCCCC--------------------------------eEEEeeCCCcEEEEeCCCCc
Q psy16881 180 NDKTVTIWDMLAT--------------------------------LLASGSNDKTVTIWDMRGNL 212 (222)
Q Consensus 180 ~D~~i~lwd~~~~--------------------------------~l~s~~~d~~i~iwd~~~~~ 212 (222)
.||+|++||+.+. .+++++.|++|++||+.+..
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSS
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCc
Confidence 9999999995321 16788999999999998543
No 117
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.83 E-value=3.7e-19 Score=142.16 Aligned_cols=162 Identities=24% Similarity=0.310 Sum_probs=108.3
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeec--cCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN--DRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
|...+.++.+++++++|++++.||+|++||+.+++...... ...+. ..+......+................+..++
T Consensus 149 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC-SCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC-CceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 36789999999999999999999999999998654321110 00010 1111111111110000000111111233332
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCC
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSND 181 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D 181 (222)
.. .........+...+..+.|++.++.+++++ .|+.|+|||+++++++.++.+|...|++++|+|++++|+||+.|
T Consensus 228 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 228 VC--SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp TT--TCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred cc--cccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 11 011112234677899999999998777654 79999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCC
Q psy16881 182 KTVTIWDML 190 (222)
Q Consensus 182 ~~i~lwd~~ 190 (222)
++|++||+.
T Consensus 306 ~~v~iWd~~ 314 (318)
T 4ggc_A 306 ETLRLWRCF 314 (318)
T ss_dssp TEEEEECCS
T ss_pred CeEEEEECC
Confidence 999999984
No 118
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.83 E-value=7e-19 Score=147.91 Aligned_cols=172 Identities=26% Similarity=0.437 Sum_probs=125.2
Q ss_pred ccc-eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 27 GSN-MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 27 ~~~-v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
.+. +.++ +++|++|++|+.||+|++||+.++.....+. +|.... .... +. ....+.+.....+..|+..
T Consensus 118 ~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v-~~~~---~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 118 DDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--GHTGGV-WSSQ---MR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp TTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECC--CCSSCE-EEEE---EE--TTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEc--CCCCCE-EEEE---ec--CCEEEEEeCCCeEEEEECC
Confidence 444 4654 4578999999999999999999888776652 332221 1111 10 1112222223344444421
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
.+.....+.+|...|.++.++ ++.+++|+.||.|++||+++++++..+.+|...|.++.+ ++.++++++.|+.|+
T Consensus 188 -~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 188 -TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp -TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred -cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence 111223456799999999995 578999999999999999999999999999999999998 688999999999999
Q ss_pred EEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 186 IWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 186 lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
+||+. ...+++++.|+.|++||++ ++..
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE
Confidence 99974 3579999999999999997 4443
No 119
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.82 E-value=1.7e-18 Score=144.80 Aligned_cols=130 Identities=25% Similarity=0.440 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc
Q psy16881 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ 109 (222)
Q Consensus 30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (222)
.+.|+||++ ++||+|. |++|+|||..++.......
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~------------------------------------------- 142 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQ------------------------------------------- 142 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEE-------------------------------------------
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEE-------------------------------------------
Confidence 356889975 5777765 9999999998765443220
Q ss_pred CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881 110 DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 110 ~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
+.+|...|++++|+|+|++|++|+.||.|+|||+++++++..+.+|...+.+++++ +.+|++|+.|+.+++||.
T Consensus 143 ----~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 143 ----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp ----CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEET
T ss_pred ----ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeee
Confidence 12477889999999999999999999999999999999999999999999888775 679999999999999997
Q ss_pred C------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 190 L------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 190 ~------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
. ..++++++.|+.+++||.+.
T Consensus 217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred cccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 4 35799999999999999873
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.82 E-value=1.5e-18 Score=140.86 Aligned_cols=135 Identities=24% Similarity=0.330 Sum_probs=100.1
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|.+++|+|++++|++++.||+|++||+.+......
T Consensus 85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~----------------------------------------- 123 (368)
T 3mmy_A 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI----------------------------------------- 123 (368)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------
T ss_pred ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee-----------------------------------------
Confidence 478899999999999999999999999999875443211
Q ss_pred eeccCCccccccCCCEEEEEE--cCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-----------------------
Q psy16881 106 VYGQDSETVGRHTSAVTSVRF--NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT----------------------- 160 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~--~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~----------------------- 160 (222)
..|...|.+++| +++++++++++.||.|++||+++++.+..+..+.
T Consensus 124 ---------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (368)
T 3mmy_A 124 ---------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIV 194 (368)
T ss_dssp ---------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred ---------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence 136777888888 7777788888888888888887776655554432
Q ss_pred ------------------ccEEEEEEcCCCCE----EEEeeCCCeEEEEeCC----------------------------
Q psy16881 161 ------------------RYVTCCTFSCDDSL----LASGSNDKTVTIWDML---------------------------- 190 (222)
Q Consensus 161 ------------------~~V~~~~~s~~~~~----l~s~s~D~~i~lwd~~---------------------------- 190 (222)
..+.++.+.++... +++++.|+.|++||+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (368)
T 3mmy_A 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIY 274 (368)
T ss_dssp EECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEEC
T ss_pred EEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccccc
Confidence 22334444433332 8888888888888863
Q ss_pred ----------CCeEEEeeCCCcEEEEeCCC
Q psy16881 191 ----------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 ----------~~~l~s~~~d~~i~iwd~~~ 210 (222)
..+|++++.|+.|++||++.
T Consensus 275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred ceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 23688888899999999873
No 121
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.82 E-value=3e-18 Score=138.31 Aligned_cols=183 Identities=11% Similarity=0.103 Sum_probs=128.3
Q ss_pred eeccceEEEEEcCCCC-eEEEecCCCeEEEEeC-CCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881 25 HIGSNMRCVRFSPDTR-LLATGGDDETVTVWRS-DDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT 102 (222)
Q Consensus 25 ~~~~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (222)
.|...|.+++|+|+++ +|++|+.||+|++|++ .+.... ......+.. .+.. +.+.+ ....+.......+..|
T Consensus 54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~-~v~~---l~~~~-~~~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTNNEANL-GICR---ICKYG-DDKLIAASWDGLIEVI 127 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBSCCCCS-CEEE---EEEET-TTEEEEEETTSEEEEE
T ss_pred ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-eccccCCCC-ceEE---EEeCC-CCEEEEEcCCCeEEEE
Confidence 3478899999999999 9999999999999999 766542 221100221 1111 11122 2222223333345555
Q ss_pred eeeee--------ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-Cc--eEEEeccCCccEEEEEEcC-
Q psy16881 103 RVGVY--------GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LT--CIKTLESHTRYVTCCTFSC- 170 (222)
Q Consensus 103 ~~~~~--------~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~-~~--~~~~~~~~~~~V~~~~~s~- 170 (222)
+.... ......+. |...|.+++|++++ +++++.|+.|++||+++ +. .......|...|.+++|+|
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred cccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCC
Confidence 43220 22223333 88899999999876 99999999999999987 44 3344556788899999999
Q ss_pred CCCEEEEeeCCCeEEEEeCC--------------------------------------CCeEEEeeCCCcEEEEeCC-CC
Q psy16881 171 DDSLLASGSNDKTVTIWDML--------------------------------------ATLLASGSNDKTVTIWDMR-GN 211 (222)
Q Consensus 171 ~~~~l~s~s~D~~i~lwd~~--------------------------------------~~~l~s~~~d~~i~iwd~~-~~ 211 (222)
+++++++++.|+.+++|++. ..+|++++.|+.|++||++ ++
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 99999999999999999862 1358999999999999998 44
Q ss_pred ccccC
Q psy16881 212 LSVDV 216 (222)
Q Consensus 212 ~~~~~ 216 (222)
....+
T Consensus 285 ~~~~~ 289 (342)
T 1yfq_A 285 KIKNF 289 (342)
T ss_dssp EEEEC
T ss_pred Hhhhh
Confidence 44433
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6e-19 Score=148.77 Aligned_cols=185 Identities=12% Similarity=0.086 Sum_probs=126.2
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc---eEEeeccCCC---cce-------------e--------------
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS---LIMETNDRGH---TQG-------------R-------------- 74 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~---~~~~~~~~~~---~~~-------------~-------------- 74 (222)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..... ... .
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999977665 57899999998887 4443321100 000 0
Q ss_pred e------------------ccceecCccCCcccc-eeeeeeeeeEeeeeee-eccCCcccc--ccCCCEEEEEEcCCCCE
Q psy16881 75 I------------------EGWGRVPACPLCRTR-VFSTFVKQIIPTRVGV-YGQDSETVG--RHTSAVTSVRFNHKSSL 132 (222)
Q Consensus 75 ~------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--~h~~~i~~l~~~~~~~~ 132 (222)
. .....+.+.+..... +.......+..|+... .+.....+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 0 000001112222221 1222233444554321 111222332 46788999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceEE----EeccCCccEEEEEEcCC---CCEEEEeeCCCeEEEEeCC---------------
Q psy16881 133 LVSGSVDKTVKLWDVPSLTCIK----TLESHTRYVTCCTFSCD---DSLLASGSNDKTVTIWDML--------------- 190 (222)
Q Consensus 133 l~sg~~dg~I~iwd~~~~~~~~----~~~~~~~~V~~~~~s~~---~~~l~s~s~D~~i~lwd~~--------------- 190 (222)
|++|+.+|.|++|++.+.+... .+.+|...|.+++|+|+ +++|++++.|++|++||+.
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998766443 67789999999999999 9999999999999999973
Q ss_pred --------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 191 --------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 191 --------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
..+|++++.|+.|++||++ +++.
T Consensus 244 v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 244 VSSICCGKDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp EEEEEECSTTEEEEEESSSEEEEEETTTCCEE
T ss_pred eEEEEECCCCEEEEEeCCCeEEEEECCCCcEe
Confidence 3479999999999999998 4443
No 123
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=3.3e-19 Score=150.38 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=100.5
Q ss_pred eccceEEEEEcCCCCeEE----EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881 26 IGSNMRCVRFSPDTRLLA----TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP 101 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (222)
+.+.|.+++|+|+|++|+ +|+.|++|++||+.+... +.... .. + ..
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~-------~~~~~-~~-----~----------------~~- 140 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSN-------EAKQQ-KR-----P----------------FA- 140 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHC-------TTCSS-CC-----C----------------SE-
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccccc-------CCcCC-cc-----e----------------ee-
Confidence 356799999999999999 899999999999753210 00000 00 0 00
Q ss_pred eeeeeeccCCccccccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881 102 TRVGVYGQDSETVGRHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180 (222)
Q Consensus 102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~ 180 (222)
....+.+|...|.+++|+|+ ++++++++.||+|++||++++..+....+|...|.+++|+|+|++|++|+.
T Consensus 141 --------~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~ 212 (434)
T 2oit_A 141 --------YHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ 212 (434)
T ss_dssp --------EEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET
T ss_pred --------eeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC
Confidence 00123468899999999998 789999999999999999988777667778889999999999999999999
Q ss_pred CCeEEEEeCC
Q psy16881 181 DKTVTIWDML 190 (222)
Q Consensus 181 D~~i~lwd~~ 190 (222)
|++|++||+.
T Consensus 213 dg~v~iwd~~ 222 (434)
T 2oit_A 213 NGTVVQYLPT 222 (434)
T ss_dssp TSCEEEECTT
T ss_pred CCcEEEEccC
Confidence 9999999975
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.74 E-value=9.2e-16 Score=126.24 Aligned_cols=173 Identities=15% Similarity=0.148 Sum_probs=119.3
Q ss_pred cceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeee
Q psy16881 28 SNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVG 105 (222)
Q Consensus 28 ~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 105 (222)
..+.+++|+|+|++| ++++.|++|++||+.+++......... .+.. +.+.+.......... ...+..++..
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~v~~---~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----SPQG---VAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SEEE---EEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC----Cccc---eEECCCCCEEEEEECCCCEEEEEECC
Confidence 558999999999976 677799999999999887766553221 1111 112222222222221 1233333321
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEE-EEeeCCCe
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLL-ASGSNDKT 183 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l-~s~s~D~~ 183 (222)
. ......+. +...+.+++|+++++.+ ++++.++.|++||+++++.+..+..+. .+.+++|+|+++.| ++++.++.
T Consensus 105 ~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~ 181 (391)
T 1l0q_A 105 S-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMS 181 (391)
T ss_dssp T-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred C-CeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCE
Confidence 0 11111222 34568999999999976 788889999999999998888877654 57899999999887 57788999
Q ss_pred EEEEeCC----------------------CCeEEEee---CCCcEEEEeCCC
Q psy16881 184 VTIWDML----------------------ATLLASGS---NDKTVTIWDMRG 210 (222)
Q Consensus 184 i~lwd~~----------------------~~~l~s~~---~d~~i~iwd~~~ 210 (222)
|++||+. ..++++++ .++.|++||++.
T Consensus 182 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 182 ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp EEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred EEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 9999984 34566666 689999999974
No 125
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=2.8e-17 Score=138.59 Aligned_cols=150 Identities=14% Similarity=0.182 Sum_probs=109.2
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (222)
..++.+++++++.+|++++.|+ +++|+..+.... ........ . ...
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~~~~-----------------~--------~~~------ 82 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGDDPN-----------------K--------IVD------ 82 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTCCTT-----------------C--------EEE------
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccccCcc-----------------c--------ccc------
Confidence 4578899999999999999888 888875321100 00000000 0 000
Q ss_pred ccCCccccccCCCEEEEEEcCCCCEEE----EEeCCCcEEEEeCCCC--------c---eEEEeccCCccEEEEEEcCC-
Q psy16881 108 GQDSETVGRHTSAVTSVRFNHKSSLLV----SGSVDKTVKLWDVPSL--------T---CIKTLESHTRYVTCCTFSCD- 171 (222)
Q Consensus 108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~----sg~~dg~I~iwd~~~~--------~---~~~~~~~~~~~V~~~~~s~~- 171 (222)
... ...-.+...|.+++|++++++|+ +|+.|+.|+|||+++. + .+..+.+|...|.+++|+|+
T Consensus 83 ~~~-~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 161 (434)
T 2oit_A 83 KVQ-GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV 161 (434)
T ss_dssp CCC-CEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC
T ss_pred cCc-cccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC
Confidence 000 00012567899999999999999 8899999999998654 1 24556678999999999998
Q ss_pred CCEEEEeeCCCeEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881 172 DSLLASGSNDKTVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGNL 212 (222)
Q Consensus 172 ~~~l~s~s~D~~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~ 212 (222)
+.+|++++.|++|++||+. +.+|++|+.|++|++||+++..
T Consensus 162 ~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~ 225 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQE 225 (434)
T ss_dssp TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCE
T ss_pred CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcc
Confidence 8999999999999999974 3579999999999999998443
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.71 E-value=6.9e-16 Score=128.64 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=114.3
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
...+.+++|+|+++++++++.|++|++||+.+++......
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------------------------------- 161 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP---------------------------------------- 161 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC----------------------------------------
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC----------------------------------------
Confidence 3456789999988888999999999999988655432210
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-EeeCCCeEE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-SGSNDKTVT 185 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s~s~D~~i~ 185 (222)
...+.+|...|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.++ +++.|+.|+
T Consensus 162 ----~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 237 (433)
T 3bws_A 162 ----PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDIS 237 (433)
T ss_dssp ----CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ----cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEE
Confidence 001235788899999999999999999999999999999999888888899999999999999885 555899999
Q ss_pred EEeCC----------------------CCeEEEee--------CCCcEEEEeCCC
Q psy16881 186 IWDML----------------------ATLLASGS--------NDKTVTIWDMRG 210 (222)
Q Consensus 186 lwd~~----------------------~~~l~s~~--------~d~~i~iwd~~~ 210 (222)
+||+. ...+++++ .|+.|++||+++
T Consensus 238 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 238 VIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp EEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred EEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 99974 34677776 488999999974
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.71 E-value=3.4e-15 Score=122.87 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=117.3
Q ss_pred ccceEEEEEcCCCCeEE-EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee-eeeeeeEeeee
Q psy16881 27 GSNMRCVRFSPDTRLLA-TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS-TFVKQIIPTRV 104 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 104 (222)
...+.+++|+|++++|+ +++.|++|++||+.+++......... . +.. +.+.+........ .....+..++.
T Consensus 73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~--~--~~~---~~~s~dg~~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--S--PLG---LALSPDGKKLYVTNNGDKTVSVINT 145 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--S--EEE---EEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC--C--cce---EEECCCCCEEEEEeCCCCEEEEEEC
Confidence 34799999999999775 55678999999999887765543211 1 111 1112222212111 11223333332
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee---C
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS---N 180 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s---~ 180 (222)
.. ......+. +...+..++|+|+++.+ ++++.++.|++||+++++.+..+.. ...+.+++|+|++++|++++ .
T Consensus 146 ~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 146 VT-KAVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKY 222 (391)
T ss_dssp TT-TEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSS
T ss_pred CC-CcEEEEEe-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcC
Confidence 10 11111222 23457899999999876 6778899999999999888777654 56789999999999999888 6
Q ss_pred CCeEEEEeCC----------------------CCeE-EEeeCCCcEEEEeCCC
Q psy16881 181 DKTVTIWDML----------------------ATLL-ASGSNDKTVTIWDMRG 210 (222)
Q Consensus 181 D~~i~lwd~~----------------------~~~l-~s~~~d~~i~iwd~~~ 210 (222)
++.|++||+. ...+ ++++.|+.|++||+.+
T Consensus 223 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 223 FNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred CCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 8999999974 2334 6778899999999973
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.69 E-value=9e-15 Score=122.38 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=122.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCC---eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee---eeeeE
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDE---TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF---VKQII 100 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 100 (222)
.+.|.+++|+|||++|++++.|+ +|++||+.+++......... .+.. ..++++....++... ...+.
T Consensus 178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~----~~~~---~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----HNGA---PAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS----CEEE---EEECTTSSEEEEEECTTSSCEEE
T ss_pred CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC----cccC---EEEcCCCCEEEEEEecCCCceEE
Confidence 67899999999999999999886 99999998876543221111 1111 122233332332221 11233
Q ss_pred eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881 101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DK--TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 177 (222)
.++.. ......+..|...+..++|+|+|+.|+.++. ++ .|.+||+.+++. ..+..+...+.+++|+|+|++|++
T Consensus 251 ~~d~~--~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~ 327 (415)
T 2hqs_A 251 VMDLA--SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVM 327 (415)
T ss_dssp EEETT--TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEE
T ss_pred EEECC--CCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEE
Confidence 33211 1122344567788999999999998888876 45 577779887764 445566778999999999999998
Q ss_pred eeCC---CeEEEEeCC---------------------CCeEEEeeCCC---cEEEEeCCCCccccCC
Q psy16881 178 GSND---KTVTIWDML---------------------ATLLASGSNDK---TVTIWDMRGNLSVDVP 217 (222)
Q Consensus 178 ~s~D---~~i~lwd~~---------------------~~~l~s~~~d~---~i~iwd~~~~~~~~~~ 217 (222)
++.+ ..|.+||+. +..|++++.++ .|++||+.+.....++
T Consensus 328 ~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 328 VSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp EEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred EECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 8764 589999974 34677777666 7999999866555444
No 129
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.69 E-value=2.5e-15 Score=125.30 Aligned_cols=135 Identities=11% Similarity=0.110 Sum_probs=110.3
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
|.+.|.+++|+|+++++++++.|++|++||+++.+.....
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~---------------------------------------- 207 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV---------------------------------------- 207 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------------------
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE----------------------------------------
Confidence 3567999999999999999999999999998754433211
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEee-----
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGS----- 179 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s----- 179 (222)
..|...+.+++|+|+++.++ +++.|+.|++||+++++.+..+..+ ..+.+++|+|+++.|++++
T Consensus 208 ---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 208 ---------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp ---------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCT
T ss_pred ---------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCc
Confidence 13567789999999998775 5558999999999999888877664 4589999999999999888
Q ss_pred ---CCCeEEEEeCC----------------------C-CeEEEeeCCCcEEEEeCCC
Q psy16881 180 ---NDKTVTIWDML----------------------A-TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 180 ---~D~~i~lwd~~----------------------~-~~l~s~~~d~~i~iwd~~~ 210 (222)
.|+.|++||+. . .++++++.|+.|++||+++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 58899999974 2 2567778899999999984
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=4.6e-14 Score=110.70 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=111.9
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCC-CceEEeeccCCCcceeeccceecCccCCcccceeeeee--eeeEeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDD-LSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV--KQIIPTR 103 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 103 (222)
...|.+++|+|+|++|++++ ++.|++||+.+ +....... .+....+.. ..+.+.....++.... .....+.
T Consensus 41 ~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~---~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GFATICNND---HGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC--TTCCCBCSC---CEECTTSSEEEEEECTTTSSCEEEE
T ss_pred CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc--ccccccccc---eEECCCCCEEEEEEeCCCCcceEEE
Confidence 77899999999999999886 88999999987 65543321 111111111 1122222222222210 1112222
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCC-CCceEEEeccCCccEEEEEEcCCCCEEEEee-C
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLV-SGSVDKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLLASGS-N 180 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~-~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s-~ 180 (222)
..........+.. ...+..++|+|+++.++ +++.++.++||++. .......+..+...+.++.|+|+++.|+.++ .
T Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 115 LPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp EETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred EECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 1111111222222 33488899999999766 78889999999853 2233456667778899999999999888766 5
Q ss_pred CCeEEEEeCC------------------------CCeEEEeeCC-----------CcEEEEeCCC
Q psy16881 181 DKTVTIWDML------------------------ATLLASGSND-----------KTVTIWDMRG 210 (222)
Q Consensus 181 D~~i~lwd~~------------------------~~~l~s~~~d-----------~~i~iwd~~~ 210 (222)
++.+++|++. ...+++++.+ +.|.+||+.+
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 8899999862 3456666654 5699999974
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.53 E-value=5e-13 Score=115.60 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=103.5
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEeC--CCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 29 NMRCVRFSPDTRLLATGGDDETVTVWRS--DDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
.+..++|+|||++|++++.|++|++||+ .+.+.+.+.
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i----------------------------------------- 218 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI----------------------------------------- 218 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-----------------------------------------
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-----------------------------------------
Confidence 3888999999999999999999999998 443322211
Q ss_pred eccCCccccccCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEeCCCCceEEEeccC-----------CccEEEEEEcC
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNH----KSSLLVSGSV-DKTVKLWDVPSLTCIKTLESH-----------TRYVTCCTFSC 170 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~----~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~-----------~~~V~~~~~s~ 170 (222)
. +...+..++|+| +|+++++++. ++.|.+||..+++++..+..+ ...+..+.+++
T Consensus 219 --------~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 219 --------K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp --------E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred --------e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 0 223467899999 9999998884 899999999999988877642 22688999999
Q ss_pred CCC-EEEEeeCCCeEEEEeCC------------------------CCe-EEEeeCCCcEEEEeCC-CCccc
Q psy16881 171 DDS-LLASGSNDKTVTIWDML------------------------ATL-LASGSNDKTVTIWDMR-GNLSV 214 (222)
Q Consensus 171 ~~~-~l~s~s~D~~i~lwd~~------------------------~~~-l~s~~~d~~i~iwd~~-~~~~~ 214 (222)
+++ ++++...+++|.+||.. ..+ ++++..+++|.+||++ +++..
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 765 45567788999999963 233 4455568899999998 44443
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.51 E-value=1.3e-12 Score=116.26 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=97.7
Q ss_pred ccceEEEEEcCCCCeEEEecC-CC-----eEEEEeCCCCceEEeeccCCCcc---------e------ee---ccceecC
Q psy16881 27 GSNMRCVRFSPDTRLLATGGD-DE-----TVTVWRSDDLSLIMETNDRGHTQ---------G------RI---EGWGRVP 82 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~-Dg-----~i~iwd~~~~~~~~~~~~~~~~~---------~------~~---~~~~~~~ 82 (222)
...+..++|||||++|++++. |+ +|++||+.++............+ . .+ .......
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 345899999999999999998 88 99999998877654432111110 0 00 0001122
Q ss_pred ccCCcccceeeeeeeeeEeeeeeeecc---CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC
Q psy16881 83 ACPLCRTRVFSTFVKQIIPTRVGVYGQ---DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH 159 (222)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 159 (222)
++++....++... ..+..++.. .. ....+..|...+..++|+|+|++++.++ ++.|.+||+.+++.......+
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~--~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLK--QEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESS--SCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECC--CCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 3333333333322 333333321 12 2334556778899999999999999887 469999999887765544433
Q ss_pred Ccc----------------EEEEEEcCCCCEEEEeeCCC
Q psy16881 160 TRY----------------VTCCTFSCDDSLLASGSNDK 182 (222)
Q Consensus 160 ~~~----------------V~~~~~s~~~~~l~s~s~D~ 182 (222)
... +..+.|||+|+.|++++.|+
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 332 36799999999999988765
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.49 E-value=3.8e-12 Score=106.42 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=101.1
Q ss_pred ccceEEEEEcCCCCeEE-EecCCCe--EEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee---eeE
Q psy16881 27 GSNMRCVRFSPDTRLLA-TGGDDET--VTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK---QII 100 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~-tgs~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 100 (222)
...+.+++|+|||++|+ +++.|+. |++||+.++...... .+. ..+.. ..++++....++..... .+.
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~---~~~-~~~~~---~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---DGR-SNNTE---PTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC---CCS-SCEEE---EEECTTSSEEEEEECTTSSCEEE
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc---CCC-Ccccc---eEECCCCCEEEEEECCCCCcEEE
Confidence 56799999999999877 6666655 899999876543221 111 11111 12223333233332211 222
Q ss_pred eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881 101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD---KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 177 (222)
.++. .......+..+...+..++|+|+|++|++++.+ ..|.+||+.+++. ..+..+. .+.+++|+|+|+.|++
T Consensus 295 ~~d~--~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 295 KVNI--NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIY 370 (415)
T ss_dssp EEET--TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEE
T ss_pred EEEC--CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEE
Confidence 2221 111222233456778899999999998888764 5899999998776 3455554 7899999999999999
Q ss_pred eeCCC---eEEEEeCCCCe
Q psy16881 178 GSNDK---TVTIWDMLATL 193 (222)
Q Consensus 178 ~s~D~---~i~lwd~~~~~ 193 (222)
++.++ .|.+||+.+..
T Consensus 371 ~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEETTEEEEEEEETTSCC
T ss_pred EEcCCCccEEEEEECCCCc
Confidence 88877 79999986543
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.47 E-value=8.6e-12 Score=100.08 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=106.9
Q ss_pred eccceEEEEEcCCCCeEEEecCC-CeEEEEeCC--CCceE--EeeccCCCcceeeccceecCccCCcccceeeee-eeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDD-ETVTVWRSD--DLSLI--METNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQI 99 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~D-g~i~iwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 99 (222)
+...+.+++|+|+|++|++++.+ +.|++|+++ ++... ....... .... +.+.+.......... ...+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~s~dg~~l~~~~~~~~~i 108 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG----SLTH---ISTDHQGQFVFVGSYNAGNV 108 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS----CCSE---EEECTTSSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC----CCcE---EEEcCCCCEEEEEecCCCeE
Confidence 35678899999999988888876 999999987 44322 2221111 0110 111122221111211 1223
Q ss_pred Eeeeee--eeccCCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-CceEE----Eecc-CCccEEEEEEcC
Q psy16881 100 IPTRVG--VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPS-LTCIK----TLES-HTRYVTCCTFSC 170 (222)
Q Consensus 100 ~~~~~~--~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~-~~~~~----~~~~-~~~~V~~~~~s~ 170 (222)
..++.. ........+. ....+.+++|+|+++++++++ .++.|++||+.+ ++... .+.. ....+..++|+|
T Consensus 109 ~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 187 (343)
T 1ri6_A 109 SVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 187 (343)
T ss_dssp EEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred EEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC
Confidence 333321 0001111122 234577899999999888777 899999999987 54422 2222 234688999999
Q ss_pred CCCEEEEe-eCCCeEEEEeCC---------------------------------CCeEE-EeeCCCcEEEEeCC
Q psy16881 171 DDSLLASG-SNDKTVTIWDML---------------------------------ATLLA-SGSNDKTVTIWDMR 209 (222)
Q Consensus 171 ~~~~l~s~-s~D~~i~lwd~~---------------------------------~~~l~-s~~~d~~i~iwd~~ 209 (222)
++++++++ ..++.+.+||+. ...++ +...++.|++||++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 99977654 488999999972 12344 55578899999997
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.43 E-value=2.6e-11 Score=97.80 Aligned_cols=183 Identities=9% Similarity=0.005 Sum_probs=113.2
Q ss_pred ccceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcc-eeecc--ceecCccCCcccceeeee--eeeeE
Q psy16881 27 GSNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQ-GRIEG--WGRVPACPLCRTRVFSTF--VKQII 100 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~ 100 (222)
+..+..++|+|+|+++ ++...++.|.+||..+++............ ..... ...+.+.+.......... ...+.
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 4557788999999955 555668999999999887765543211000 00000 000111112121111111 11222
Q ss_pred eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEecc----CCccEEEEEEcCCCCEEE
Q psy16881 101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES----HTRYVTCCTFSCDDSLLA 176 (222)
Q Consensus 101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~----~~~~V~~~~~s~~~~~l~ 176 (222)
.++.. .......+..+...+..+.|+|+++++++++.++.|.+||+.+++.+..+.. +...+..++|+|+++.++
T Consensus 168 ~~d~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 168 VVDGG-NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EEETT-TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EEcCC-CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 22211 0011111222344467889999999999999999999999999988776654 455688899999999777
Q ss_pred EeeC-CCeEEEEeCC---------------------CC-eEEEeeCCCcEEEEeCCC
Q psy16881 177 SGSN-DKTVTIWDML---------------------AT-LLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 177 s~s~-D~~i~lwd~~---------------------~~-~l~s~~~d~~i~iwd~~~ 210 (222)
+++. ++.|.+||+. .. ++++...++.|.+||+.+
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 6664 4899999973 23 344445789999999973
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.43 E-value=1.2e-11 Score=99.82 Aligned_cols=175 Identities=10% Similarity=0.047 Sum_probs=111.3
Q ss_pred ccceEEEEEcCCCCeEEEecC-------CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGD-------DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQ 98 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 98 (222)
+..+..++|+|+|++|++++. +++|.+||..+++.......... . .. +.............. ...
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~---~~---~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-P---FG---ATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-C---CS---EEEETTTTEEEEEETTTTE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-c---ce---EEECCCCCEEEEEecCCCE
Confidence 566888999999998887764 57899999998876655432111 0 00 011111111111111 112
Q ss_pred eEeeeeeeeccCCccccccC---------CCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEeccCCccEEEEE
Q psy16881 99 IIPTRVGVYGQDSETVGRHT---------SAVTSVRFNHKSSLLVSGS--VDKTVKLWDVPSLTCIKTLESHTRYVTCCT 167 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h~---------~~i~~l~~~~~~~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~ 167 (222)
+..++.. .......+..+. ..+..+.|+|+++.++.++ .++.|.+||..+++.+..+..+...+..++
T Consensus 113 v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 113 VTAIDAK-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp EEEEETT-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred EEEEeCC-CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 2222210 000001111111 1268899999999777766 478899999999988888875556678899
Q ss_pred EcCCCCEEEEeeCCCeEEEEeCC---------------------------CCeEEEee-CCCcEEEEeCC
Q psy16881 168 FSCDDSLLASGSNDKTVTIWDML---------------------------ATLLASGS-NDKTVTIWDMR 209 (222)
Q Consensus 168 ~s~~~~~l~s~s~D~~i~lwd~~---------------------------~~~l~s~~-~d~~i~iwd~~ 209 (222)
|+|+++.|++++.++.+.+||+. ...++.++ .++.|.+||+.
T Consensus 192 ~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 192 LDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp EETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 99999999999999999999973 12344444 45899999997
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.43 E-value=3.4e-11 Score=96.63 Aligned_cols=174 Identities=10% Similarity=0.133 Sum_probs=106.8
Q ss_pred eEE-EEEcCCCCeEEEecCCC---eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee-ee-eEeee
Q psy16881 30 MRC-VRFSPDTRLLATGGDDE---TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV-KQ-IIPTR 103 (222)
Q Consensus 30 v~~-l~~spdg~~l~tgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 103 (222)
... ++|+|+|++|+++..++ +|++||+.+++......... .. . .+.+.+........... .. +..++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~---~---~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DA---V---GIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TE---E---EEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-Cc---c---ceEECCCCCEEEEEecCCCceEEEEE
Confidence 344 89999999998665553 99999999887665543211 11 0 01122222221111111 12 22222
Q ss_pred eee----eccCCccccccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCce---EEEeccCCccEEEEEEcCCCCEE
Q psy16881 104 VGV----YGQDSETVGRHTSAVTSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTC---IKTLESHTRYVTCCTFSCDDSLL 175 (222)
Q Consensus 104 ~~~----~~~~~~~~~~h~~~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~---~~~~~~~~~~V~~~~~s~~~~~l 175 (222)
... .......+ ........++|+|++++++ ++..++.|++||+.+++. +..+..+ ..+..++|+|+|++|
T Consensus 158 ~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l 235 (331)
T 3u4y_A 158 IDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTV 235 (331)
T ss_dssp ECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEE
T ss_pred ECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEE
Confidence 110 00001111 2344578999999999654 445688999999998887 7776654 556789999999977
Q ss_pred EEee-CCCeEEEEeCC--------------------------------CCeEE-EeeCCCcEEEEeCCCCc
Q psy16881 176 ASGS-NDKTVTIWDML--------------------------------ATLLA-SGSNDKTVTIWDMRGNL 212 (222)
Q Consensus 176 ~s~s-~D~~i~lwd~~--------------------------------~~~l~-s~~~d~~i~iwd~~~~~ 212 (222)
+.+. .++.|.+||+. ...|+ ++..++.|.+||+....
T Consensus 236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 6554 57789999963 12344 44456799999998554
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.42 E-value=1.4e-11 Score=98.50 Aligned_cols=172 Identities=9% Similarity=-0.015 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCeEEEec------------CCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee
Q psy16881 29 NMRCVRFSPDTRLLATGG------------DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV 96 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (222)
.+..++|+|+|++|++++ .++.|.+||+.+.+........ .. ... +.+.+........ .
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~---~~~---~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQ---ITM---LAWARDGSKLYGL--G 153 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SS---CCC---EEECTTSSCEEEE--S
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CC---cce---eEECCCCCEEEEe--C
Confidence 567799999999998886 5799999999887665544211 11 000 1111222211111 1
Q ss_pred eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCC-C-----------------------cEEEEeCCCCce
Q psy16881 97 KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD-K-----------------------TVKLWDVPSLTC 152 (222)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d-g-----------------------~I~iwd~~~~~~ 152 (222)
..+..++.. .......+.. ......+.|+|+++.++..+.. + .|.+||+.+++.
T Consensus 154 ~~i~~~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 154 RDLHVMDPE-AGTLVEDKPI-QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp SSEEEEETT-TTEEEEEECS-TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred CeEEEEECC-CCcEeeeeec-cccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 122222210 0000011111 1112334667777655444332 2 468999988766
Q ss_pred E-EEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 153 I-KTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 153 ~-~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
. ..+..+...+..++|+|++++++++ ++.|.+||+. ...+++++.++.|++||++
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 4 2344556678899999999999988 7899999974 3457777889999999997
Q ss_pred -CCcc
Q psy16881 210 -GNLS 213 (222)
Q Consensus 210 -~~~~ 213 (222)
++..
T Consensus 310 ~~~~~ 314 (337)
T 1pby_B 310 TLEKK 314 (337)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 4443
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.42 E-value=4.2e-11 Score=96.02 Aligned_cols=175 Identities=13% Similarity=0.215 Sum_probs=100.5
Q ss_pred cceEEEEEcCCCCeEEEec-CCCeEEEEeCCCC---ceEEeeccCCCcceeeccceecCccCCcccceeee-eeeeeEee
Q psy16881 28 SNMRCVRFSPDTRLLATGG-DDETVTVWRSDDL---SLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST-FVKQIIPT 102 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs-~Dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 102 (222)
..+..++|+|+|++|++++ .+++|.+|++.++ ......... .. ... +.+.+......... ....+..+
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~--~~~---~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--DG--CHS---ANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--TT--BCC---CEECTTSSEEEEEEGGGTEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--CC--ceE---EEECCCCCEEEEecCCCCEEEEE
Confidence 4688899999999876655 4899999998422 222222111 00 110 11122222122222 12233333
Q ss_pred eeeeeccCC--c--ccc-ccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC--Cce--EEEec---cC---CccEEEE
Q psy16881 103 RVGVYGQDS--E--TVG-RHTSAVTSVRFNHKSSLLVSG-SVDKTVKLWDVPS--LTC--IKTLE---SH---TRYVTCC 166 (222)
Q Consensus 103 ~~~~~~~~~--~--~~~-~h~~~i~~l~~~~~~~~l~sg-~~dg~I~iwd~~~--~~~--~~~~~---~~---~~~V~~~ 166 (222)
+....+... . .+. .....+..++|+|++++++.+ ..++.|++||+.. ++. ...+. .. ...+..+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 321100000 0 111 123467889999999976555 4789999999953 332 22222 11 2356789
Q ss_pred EEcCCCCEEE-EeeCCCeEEEEeCC--------------------------CCeEEEee-CCCcEEEEeCC
Q psy16881 167 TFSCDDSLLA-SGSNDKTVTIWDML--------------------------ATLLASGS-NDKTVTIWDMR 209 (222)
Q Consensus 167 ~~s~~~~~l~-s~s~D~~i~lwd~~--------------------------~~~l~s~~-~d~~i~iwd~~ 209 (222)
+|+|++++|+ +...++.|.+||+. ...+++++ .++.|.+|++.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999998877 45578999999974 23456555 68999999543
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.40 E-value=7.9e-12 Score=115.63 Aligned_cols=173 Identities=13% Similarity=-0.009 Sum_probs=116.7
Q ss_pred ccceEEEEEc-CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE-eeee
Q psy16881 27 GSNMRCVRFS-PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII-PTRV 104 (222)
Q Consensus 27 ~~~v~~l~~s-pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 104 (222)
...+..++|| |||++|++++ ++.|.+|+..++...... .+....+.. ..+. ......+......+. .++.
T Consensus 295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~---~~~~~~~~~---~~~s-dg~~l~~~s~~~~l~~~~d~ 366 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP---EPLRIRYVR---RGGD-TKVAFIHGTREGDFLGIYDY 366 (1045)
T ss_dssp CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS---CCSCEEEEE---ECSS-SEEEEEEEETTEEEEEEEET
T ss_pred ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc---CCCcceEEe---eeEc-CCCeEEEEECCCceEEEEEC
Confidence 3468899999 9999999887 889999998876543311 111101110 1122 222222222211222 1111
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCC--
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK-- 182 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~-- 182 (222)
.......+.+|...+..++|+|+|+++++++.++.|++||+.+++......+|...+.+++|||+|++|++++.++
T Consensus 367 --~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 367 --RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp --TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred --CCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence 1111122335778899999999999999999999999999999888777768888899999999999999887654
Q ss_pred --------eEEEEeCC----------------------CCeEEEeeCCCcEEEEeCC
Q psy16881 183 --------TVTIWDML----------------------ATLLASGSNDKTVTIWDMR 209 (222)
Q Consensus 183 --------~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~ 209 (222)
.|.+||+. +..|++++.++..++|+..
T Consensus 445 ~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 89999974 2457777777777777654
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.40 E-value=7.8e-11 Score=94.76 Aligned_cols=173 Identities=11% Similarity=0.010 Sum_probs=105.1
Q ss_pred ceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCc---ceeeccceecCccCCcccceeeeee--------
Q psy16881 29 NMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHT---QGRIEGWGRVPACPLCRTRVFSTFV-------- 96 (222)
Q Consensus 29 ~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------- 96 (222)
.+..++|+|+|+++ +++..+++|.+||+.+++........... ...... +.+.+..+........
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~---~~~spdg~~l~~~~~~~~~~~~~~ 120 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS---FAISPDGKEVYATVNPTQRLNDHY 120 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC---EEECTTSSEEEEEEEEEEECSSCE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc---eEECCCCCEEEEEccccccccccc
Confidence 47789999999865 56667899999999887766544211100 000111 1122222222222211
Q ss_pred ----eeeEeeeeeee--ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC----------
Q psy16881 97 ----KQIIPTRVGVY--GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT---------- 160 (222)
Q Consensus 97 ----~~~~~~~~~~~--~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~---------- 160 (222)
..+..++.... ....... .+...+.+++|+|+++ ++.++. .|.+||..+++.+..+..+.
T Consensus 121 ~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
T 1jmx_B 121 VVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPD 196 (349)
T ss_dssp EECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred ccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcc
Confidence 22333322110 0011111 2344578899999999 665543 49999999887766654331
Q ss_pred ----------------------------------------------------------ccEEEEEEcC-CCCEEEEeeCC
Q psy16881 161 ----------------------------------------------------------RYVTCCTFSC-DDSLLASGSND 181 (222)
Q Consensus 161 ----------------------------------------------------------~~V~~~~~s~-~~~~l~s~s~D 181 (222)
..+..++|+| ++++++++ +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~ 274 (349)
T 1jmx_B 197 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L 274 (349)
T ss_dssp CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E
T ss_pred ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c
Confidence 1345677889 99999888 8
Q ss_pred CeEEEEeCC----------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 182 KTVTIWDML----------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 182 ~~i~lwd~~----------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
+.|.+||+. ...|++++.++.|++||+++
T Consensus 275 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 275 NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred CeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 899999973 24566677889999999974
No 142
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.39 E-value=1.8e-11 Score=105.93 Aligned_cols=126 Identities=12% Similarity=0.106 Sum_probs=100.8
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCcc
Q psy16881 34 RFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSET 113 (222)
Q Consensus 34 ~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (222)
.|+|+++++++++.|++|.+||..+++++..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~----------------------------------------------- 176 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID----------------------------------------------- 176 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE-----------------------------------------------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe-----------------------------------------------
Confidence 488999999999999999999987665443220
Q ss_pred ccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCceEEEeccCCccEEEEEEcC----CCCEEEEee-CCCeEEE
Q psy16881 114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV--PSLTCIKTLESHTRYVTCCTFSC----DDSLLASGS-NDKTVTI 186 (222)
Q Consensus 114 ~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~--~~~~~~~~~~~~~~~V~~~~~s~----~~~~l~s~s-~D~~i~l 186 (222)
.++. +..++|+|+++++++++.|+.|++||+ .+++++.++.. ...+..++|+| +|++|++++ .+++|.+
T Consensus 177 -~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v 252 (543)
T 1nir_A 177 -TGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 252 (543)
T ss_dssp -CSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred -cCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence 0122 678999999999999999999999999 78888888875 44679999999 999999988 5899999
Q ss_pred EeCCC-----------------------------------CeEEEeeCCCcEEEEeCCC
Q psy16881 187 WDMLA-----------------------------------TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 187 wd~~~-----------------------------------~~l~s~~~d~~i~iwd~~~ 210 (222)
||..+ .++++...+++|.+||+..
T Consensus 253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred EeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 98631 1344555678999999863
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.37 E-value=7.1e-11 Score=94.72 Aligned_cols=135 Identities=9% Similarity=0.039 Sum_probs=95.0
Q ss_pred ccceEEEEEcCCCCeEEEecC-CCeEEEEeCCCCce-EEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGD-DETVTVWRSDDLSL-IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
...+ .++|+|+|++|++++. +++|.+||..++.. ....
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------------------------------------- 79 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI--------------------------------------- 79 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE---------------------------------------
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec---------------------------------------
Confidence 3445 8999999997665555 89999999875443 1110
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE-eeC
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK---TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS-GSN 180 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s-~s~ 180 (222)
..+..+..+++|+|++++++++..++ .|.+||+.+++.+..+..+. .+.+++|+|+|++|++ ...
T Consensus 80 ----------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 80 ----------QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp ----------EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEET
T ss_pred ----------ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecC
Confidence 01223333488999999988655553 89999999998887776544 4689999999985554 455
Q ss_pred CCe-EEEEeCC---------------------------CC-eEEEeeCCCcEEEEeCC-CCc
Q psy16881 181 DKT-VTIWDML---------------------------AT-LLASGSNDKTVTIWDMR-GNL 212 (222)
Q Consensus 181 D~~-i~lwd~~---------------------------~~-~l~s~~~d~~i~iwd~~-~~~ 212 (222)
++. +.+|++. +. +++++..++.|++||++ ++.
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 577 9988852 23 34555568899999997 444
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.36 E-value=2.5e-11 Score=105.24 Aligned_cols=170 Identities=10% Similarity=-0.004 Sum_probs=102.1
Q ss_pred ccceEEEEEcCCCCeEEEecC-CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee----eeeEe
Q psy16881 27 GSNMRCVRFSPDTRLLATGGD-DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV----KQIIP 101 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 101 (222)
...|.+++|+|||++||.++. ||+++||+++++....... +....+.. ..++++ ...+.... .....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~---~~~~~~~~---~~~spd--~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD---PHYGVG--RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS---SCCSEECE---ECTTCS--EEEEEEECSTTSCCEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec---cccccccc---ccCCCC--eEEEEeccCCCCcceEE
Confidence 456899999999999998887 9999999986655433221 11001111 112222 12222211 11112
Q ss_pred eeeee--eccCCccccccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q psy16881 102 TRVGV--YGQDSETVGRHTSAVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 102 ~~~~~--~~~~~~~~~~h~~~i~~l~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 177 (222)
+.... .+... .+.. ...+...+|+++++ .+++++.+ .+.+||+.+++.......+. .+++|||+|+.|++
T Consensus 93 ~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 21111 11111 1111 12234567777775 45555544 45599998876544433332 68899999999998
Q ss_pred eeCC----CeEEEEeCC----------------------CCeEEEeeCCC--cEEEEeCCC
Q psy16881 178 GSND----KTVTIWDML----------------------ATLLASGSNDK--TVTIWDMRG 210 (222)
Q Consensus 178 ~s~D----~~i~lwd~~----------------------~~~l~s~~~d~--~i~iwd~~~ 210 (222)
++.+ +.|.+||+. +..|++++.++ .|++||+.+
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred EEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 8877 789999973 35678777888 899999974
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.35 E-value=4.5e-11 Score=93.44 Aligned_cols=157 Identities=10% Similarity=-0.016 Sum_probs=98.5
Q ss_pred ccceEEEEEcCCCCeEEEec--CCCeEEEEeC--CCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEe
Q psy16881 27 GSNMRCVRFSPDTRLLATGG--DDETVTVWRS--DDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIP 101 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs--~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (222)
...+.+++|+|+|++|++++ .++..+||.+ .+.... ..... .. ... ..+.+.....++... ......
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~--~~--~~~---~~~spdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKN--LP--SYW---HGWSPDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSS--SS--EEE---EEECTTSSEEEEEEEETTEEEE
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-EeecC--CC--ccc---eEECCCCCEEEEEECCCCceEE
Confidence 36678899999999999988 3345555544 443322 11111 11 110 112222222222221 122223
Q ss_pred eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCceEEEeccCCccEEEEEEcCCCCEEEEee
Q psy16881 102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVP-SLTCIKTLESHTRYVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~-~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s 179 (222)
+...........+..|...+.++.|+|+++.++.++ .++.++||++. +...+..+..|...+.++.|+|++++|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp EEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence 322211222233445678899999999999777665 58999999886 5566777888888899999999999999887
Q ss_pred CC-----------CeEEEEeCCC
Q psy16881 180 ND-----------KTVTIWDMLA 191 (222)
Q Consensus 180 ~D-----------~~i~lwd~~~ 191 (222)
.+ +.|.+||+.+
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTS
T ss_pred cCCCCCcccccCceEEEEEecCC
Confidence 66 5699999864
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.34 E-value=1.4e-10 Score=102.83 Aligned_cols=155 Identities=10% Similarity=0.016 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCeEEEecCC---------CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeee
Q psy16881 29 NMRCVRFSPDTRLLATGGDD---------ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQI 99 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (222)
.|..++|||||++|++++.+ +.|++||+.++....-.....+.. .+. ...++++....++... ..+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~---~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA-KLQ---YAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC-CCS---BCCBCSSTTCEEEEET-TEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc-ccc---ccEECCCCCEEEEEEC-CeE
Confidence 38899999999999998775 788899998776522111111110 011 1223344433333322 223
Q ss_pred EeeeeeeeccCCccccccCC------------------CEEEEEEcCCCCEEEEEeCCC---------------------
Q psy16881 100 IPTRVGVYGQDSETVGRHTS------------------AVTSVRFNHKSSLLVSGSVDK--------------------- 140 (222)
Q Consensus 100 ~~~~~~~~~~~~~~~~~h~~------------------~i~~l~~~~~~~~l~sg~~dg--------------------- 140 (222)
..++... +........+.. .+..++|+|+|+.|++++.|+
T Consensus 137 ~~~~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (723)
T 1xfd_A 137 YYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP 215 (723)
T ss_dssp EEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred EEEECCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCccee
Confidence 3322110 000011111111 237899999999999887653
Q ss_pred -------------cEEEEeCCCCceEEEeccC------CccEEEEEEcCCCCEEEEeeC----CCeEEEEeC
Q psy16881 141 -------------TVKLWDVPSLTCIKTLESH------TRYVTCCTFSCDDSLLASGSN----DKTVTIWDM 189 (222)
Q Consensus 141 -------------~I~iwd~~~~~~~~~~~~~------~~~V~~~~~s~~~~~l~s~s~----D~~i~lwd~ 189 (222)
.|++||+.+++....+..+ ...+..++|||+|++|++.+. +..|.+||+
T Consensus 216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 7999999888765566554 567899999999998877653 357888986
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.34 E-value=4.7e-10 Score=90.72 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=102.0
Q ss_pred eccceEEEEEcCCCCeEEEec-CCCeEEEEeCCC-Cc--eEEeeccCCCcce---eeccceecCccCCcccceeee-eee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGG-DDETVTVWRSDD-LS--LIMETNDRGHTQG---RIEGWGRVPACPLCRTRVFST-FVK 97 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs-~Dg~i~iwd~~~-~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~ 97 (222)
+...+..++|+|||++|++++ .+++|++|++.. +. .+......+..+. .......+.+.+... ..... ...
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC
Confidence 456788899999999888877 789999999862 22 2222211111100 000000011222222 11111 112
Q ss_pred eeEeeeeeeeccC--Cccccc-cCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCC--Cce--EEEeccCC------ccE
Q psy16881 98 QIIPTRVGVYGQD--SETVGR-HTSAVTSVRFNHKSSLLVS-GSVDKTVKLWDVPS--LTC--IKTLESHT------RYV 163 (222)
Q Consensus 98 ~~~~~~~~~~~~~--~~~~~~-h~~~i~~l~~~~~~~~l~s-g~~dg~I~iwd~~~--~~~--~~~~~~~~------~~V 163 (222)
.+..++....+.. ...+.. ....+..++|+|+|++++. ...++.|++|++.. ++. +..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 2333332100000 000011 1235678999999996555 56688999999863 433 22332222 458
Q ss_pred EEEEEcCCCCEEE-EeeCCCeEEEEeCC--------------------------CCeEEEeeC-CCcEEEEeC
Q psy16881 164 TCCTFSCDDSLLA-SGSNDKTVTIWDML--------------------------ATLLASGSN-DKTVTIWDM 208 (222)
Q Consensus 164 ~~~~~s~~~~~l~-s~s~D~~i~lwd~~--------------------------~~~l~s~~~-d~~i~iwd~ 208 (222)
..++|+|+|++|+ +...++.|.+|++. +.+|++++. ++.|.+|++
T Consensus 243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 8999999999875 55668999999963 245666665 589999954
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.32 E-value=5.6e-10 Score=90.82 Aligned_cols=176 Identities=12% Similarity=0.098 Sum_probs=101.2
Q ss_pred eccceEEEEEcCCCCeEEEecCC----CeEEEEeCCC--CceE--EeeccCCCcceeeccceecCccCCcccceeeee-e
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDD----ETVTVWRSDD--LSLI--METNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-V 96 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~D----g~i~iwd~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 96 (222)
+...++.++|+|||++|++++.+ +.|.+|+++. +... ......+..+..+. . .......+.. .
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~------~--dg~~l~~~~~~~ 119 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT------T--NGKNIVTANYSG 119 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE------E--CSSEEEEEETTT
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE------E--CCCEEEEEECCC
Confidence 45677889999999999988886 8999998765 3322 11111111111000 0 1111111111 1
Q ss_pred eeeEeeeeeeeccC-------------CccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCc-------eE--
Q psy16881 97 KQIIPTRVGVYGQD-------------SETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLT-------CI-- 153 (222)
Q Consensus 97 ~~~~~~~~~~~~~~-------------~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~-------~~-- 153 (222)
..+..++....... ......+...+.+++|+|+|++++.++ .++.|++|++.... ..
T Consensus 120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence 12222221100000 000111234468899999999665555 48899999876432 11
Q ss_pred ----EEeccCCccEEEEEEcCCCCEEEEee-CCCeEEEEeCC----------------------------CCeEEEeeC-
Q psy16881 154 ----KTLESHTRYVTCCTFSCDDSLLASGS-NDKTVTIWDML----------------------------ATLLASGSN- 199 (222)
Q Consensus 154 ----~~~~~~~~~V~~~~~s~~~~~l~s~s-~D~~i~lwd~~----------------------------~~~l~s~~~- 199 (222)
.....+...+..++|+|+|+++++++ .++.|.+||+. +.+|+++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 11223344578999999999888777 68999999962 234655554
Q ss_pred -CCcEEEEeCC
Q psy16881 200 -DKTVTIWDMR 209 (222)
Q Consensus 200 -d~~i~iwd~~ 209 (222)
++.|.+|++.
T Consensus 280 ~~~~i~v~~~~ 290 (361)
T 3scy_A 280 KADGVAIFKVD 290 (361)
T ss_dssp SSCEEEEEEEC
T ss_pred CCCEEEEEEEc
Confidence 5889999985
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.31 E-value=7.5e-11 Score=95.46 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=92.4
Q ss_pred ccceEEEEEcCCCCeEEEecC---CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGD---DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
...+..++|+|||+ |++++. ++.|++|++.++......
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-------------------------------------- 79 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-------------------------------------- 79 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE--------------------------------------
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee--------------------------------------
Confidence 46678899999999 554444 689999998543321100
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CC--ceEEEecc---------CCccEEEEEEcC
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS-VDKTVKLWDVP-SL--TCIKTLES---------HTRYVTCCTFSC 170 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~-~~--~~~~~~~~---------~~~~V~~~~~s~ 170 (222)
.+..+...+..++|+|+++++++++ .++.|++||+. ++ +.+..+.. +...+.+++|+|
T Consensus 80 ---------~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp 150 (347)
T 3hfq_A 80 ---------TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP 150 (347)
T ss_dssp ---------EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT
T ss_pred ---------eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC
Confidence 0011344566789999999888887 67899999996 22 23333322 122488999999
Q ss_pred CCCEEEEeeCCCeEEEEeCC---------------------------CCeEE-EeeCCCcEEEEeCC
Q psy16881 171 DDSLLASGSNDKTVTIWDML---------------------------ATLLA-SGSNDKTVTIWDMR 209 (222)
Q Consensus 171 ~~~~l~s~s~D~~i~lwd~~---------------------------~~~l~-s~~~d~~i~iwd~~ 209 (222)
+|+++++...++.|.+||+. +.+++ +...++.|++|++.
T Consensus 151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD 217 (347)
T ss_dssp TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 99977777778899999974 12344 44567889999876
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.30 E-value=1.3e-10 Score=92.94 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=97.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCC-cceeecccee-cCccCCcccc---eeeee------
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH-TQGRIEGWGR-VPACPLCRTR---VFSTF------ 95 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~---~~~~~------ 95 (222)
+..+..++|+|+|++|+++ ++.|.+||+.++........... ....+..-+. +......... .+...
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccc
Confidence 4457788999999988887 68999999998876654432110 1000000000 0000000000 00000
Q ss_pred ------eeeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881 96 ------VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS 169 (222)
Q Consensus 96 ------~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s 169 (222)
...+..++..........+..+...+..++|+|++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+
T Consensus 212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 288 (337)
T 1pby_B 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVS 288 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEEC
T ss_pred ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEEC
Confidence 00111111100000001123355667889999999998888 699999999998887777644 457889999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCC
Q psy16881 170 CDDSLLASGSNDKTVTIWDMLA 191 (222)
Q Consensus 170 ~~~~~l~s~s~D~~i~lwd~~~ 191 (222)
|++++|++++.++.|.+||+.+
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTT
T ss_pred CCCCEEEEEcCCCcEEEEECcC
Confidence 9999999999999999999864
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.29 E-value=4.3e-10 Score=91.55 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce--EEEec---cCCccEEEEEEcCCCCEEEEeeC--CCeEEEEeCC
Q psy16881 119 SAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTC--IKTLE---SHTRYVTCCTFSCDDSLLASGSN--DKTVTIWDML 190 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~--~~~~~---~~~~~V~~~~~s~~~~~l~s~s~--D~~i~lwd~~ 190 (222)
..+..++|+|+|++++.++ .++.|.+||+.+++. +..+. .+...+..++|+|+|++|+++.. ++.|.+|++.
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 3467899999999877776 689999999986644 23332 23345689999999999877665 4899999873
Q ss_pred --------------------------CCeEEEee-CCCcEEEEeCC
Q psy16881 191 --------------------------ATLLASGS-NDKTVTIWDMR 209 (222)
Q Consensus 191 --------------------------~~~l~s~~-~d~~i~iwd~~ 209 (222)
+.+|++++ .++.|.+|++.
T Consensus 291 ~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 291 ETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp TTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 23566666 67889996543
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.29 E-value=6.3e-11 Score=104.84 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=57.1
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceEEEec--cCCc---cEEEEEEcC--CCCEEEEeeCCCe
Q psy16881 116 RHTSAVTSVRFNHKSSLLVSGSVDK-----TVKLWDVPSLTCIKTLE--SHTR---YVTCCTFSC--DDSLLASGSNDKT 183 (222)
Q Consensus 116 ~h~~~i~~l~~~~~~~~l~sg~~dg-----~I~iwd~~~~~~~~~~~--~~~~---~V~~~~~s~--~~~~l~s~s~D~~ 183 (222)
.|...+..++|+|+|+.+++++.++ .|.+||+.+++....+. .+.. .+..+.|+| +|+++++++.|+.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 3566789999999999999887776 89999999884333322 2222 235689999 9999999999998
Q ss_pred EEEEeC
Q psy16881 184 VTIWDM 189 (222)
Q Consensus 184 i~lwd~ 189 (222)
+++|.+
T Consensus 335 ~~l~~~ 340 (706)
T 2z3z_A 335 NHLYLY 340 (706)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 889865
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.29 E-value=1.2e-11 Score=109.48 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=90.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee---------ee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV---------KQ 98 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 98 (222)
..+..++|+|||+++++ +.||+|++||+.+++..............+. ...++++....++.... ..
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~---~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAI---RYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCS---EEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccc---eEEECCCCCEEEEEecCccceeecceee
Confidence 34667899999998876 7899999999988766544421110000011 12233333333333221 12
Q ss_pred eEeeeeeeec-cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE--------------
Q psy16881 99 IIPTRVGVYG-QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV-------------- 163 (222)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V-------------- 163 (222)
+..++..... ........|...+..++|+|+|+.++.++. +.|.+||+.+++.......+...+
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 2233321100 001112234455788999999999999886 799999998887665554433323
Q ss_pred ----EEEEEcCCCCEEEEeeCC
Q psy16881 164 ----TCCTFSCDDSLLASGSND 181 (222)
Q Consensus 164 ----~~~~~s~~~~~l~s~s~D 181 (222)
.+++|||+|+.|++++.|
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEE
T ss_pred ccCcceEEECCCCCEEEEEEEC
Confidence 789999999999998755
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.28 E-value=2.5e-10 Score=101.03 Aligned_cols=152 Identities=11% Similarity=0.054 Sum_probs=93.9
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (222)
..|.+++|||| +.++.+ .+++|++||+.++.......... .+.. ..++++....++. ....+..++....
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~----~~~~---~~~SpdG~~la~~-~~~~i~v~~~~~~ 151 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNE----ETAS---LDFSPVGDRVAYV-RNHNLYIARGGKL 151 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTT----CCTT---CEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcc----cccC---CcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence 45899999999 655554 35999999998776543322111 1111 1122333333332 2223333332210
Q ss_pred ----ccCCccccccCC--------------CEEEEEEcCCCCEEEEEe--------------------------------
Q psy16881 108 ----GQDSETVGRHTS--------------AVTSVRFNHKSSLLVSGS-------------------------------- 137 (222)
Q Consensus 108 ----~~~~~~~~~h~~--------------~i~~l~~~~~~~~l~sg~-------------------------------- 137 (222)
+........+.. .+..++|+|+|++|++++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 111111111222 247899999999999987
Q ss_pred -CCCcEEEEeCCCCceEEEec--cCCccEEEEEEcCCCCEEEEeeCCC-----eEEEEeC
Q psy16881 138 -VDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLLASGSNDK-----TVTIWDM 189 (222)
Q Consensus 138 -~dg~I~iwd~~~~~~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~D~-----~i~lwd~ 189 (222)
.+..|.+||+.+++...... .|...+..++|+|+|+.|++++.++ .|.+||+
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence 44679999999877544332 4667899999999999999988776 8888886
No 155
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.27 E-value=7.6e-11 Score=104.80 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=57.2
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceEEEeccCCc----cEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881 116 RHTSAVTSVRFNHKSSLLVSGSV-----DKTVKLWDVPSLTCIKTLESHTR----YVTCCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 116 ~h~~~i~~l~~~~~~~~l~sg~~-----dg~I~iwd~~~~~~~~~~~~~~~----~V~~~~~s~~~~~l~s~s~D~~i~l 186 (222)
.|...+..++| |+|+.|+.++. +..|.+||+.++++...+..+.. .+..++|+|+|+++++++.|+.++|
T Consensus 284 ~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l 362 (741)
T 2ecf_A 284 EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHL 362 (741)
T ss_dssp CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEE
T ss_pred CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEE
Confidence 36677899999 99998887654 56799999998887666554432 3457899999999999999987777
Q ss_pred EeC
Q psy16881 187 WDM 189 (222)
Q Consensus 187 wd~ 189 (222)
|.+
T Consensus 363 ~~~ 365 (741)
T 2ecf_A 363 YRI 365 (741)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.27 E-value=2.2e-11 Score=105.68 Aligned_cols=108 Identities=9% Similarity=-0.026 Sum_probs=88.0
Q ss_pred EEEEEcCCCCeEEEecCC----CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 31 RCVRFSPDTRLLATGGDD----ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 31 ~~l~~spdg~~l~tgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
..++|||||++|++++.| ++|++||+.++....
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~------------------------------------------- 189 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV------------------------------------------- 189 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-------------------------------------------
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-------------------------------------------
Confidence 678899999999988877 788889876543210
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEeccCCccEEEEE--------EcCCCCEEE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK--TVKLWDVPSLTCIKTLESHTRYVTCCT--------FSCDDSLLA 176 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~~~~V~~~~--------~s~~~~~l~ 176 (222)
+..|...+..++|+|+|+.|+++..++ .|.+||+.+++.. .+.+|...+..+. |+|+|.+++
T Consensus 190 -------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 261 (582)
T 3o4h_A 190 -------FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV 261 (582)
T ss_dssp -------ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred -------eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence 113556678899999999999888888 8999999988777 6777777776677 999999999
Q ss_pred EeeCCCeEEEEeC
Q psy16881 177 SGSNDKTVTIWDM 189 (222)
Q Consensus 177 s~s~D~~i~lwd~ 189 (222)
+++.|+++++|++
T Consensus 262 ~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 262 VARREGRSAVFID 274 (582)
T ss_dssp EEEETTEEEEEET
T ss_pred EEEcCCcEEEEEE
Confidence 9999999999997
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.24 E-value=1.4e-10 Score=107.25 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=93.8
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
...+..++|+|||++|++++.++.|++||+.++......
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~----------------------------------------- 416 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE----------------------------------------- 416 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------------
T ss_pred ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-----------------------------------------
Confidence 567899999999999999999999999998765432111
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCC----------cEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK----------TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg----------~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 176 (222)
.+|...+..++|+|+|+++++++.++ .|++||+.+++ +..+..|...+..+.|+|+|+.|+
T Consensus 417 --------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 417 --------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp --------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEE
T ss_pred --------cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEE
Confidence 13566677899999999988887654 89999999876 667778888899999999999999
Q ss_pred EeeCCCeEEEEeCC
Q psy16881 177 SGSNDKTVTIWDML 190 (222)
Q Consensus 177 s~s~D~~i~lwd~~ 190 (222)
+++.++...+|+..
T Consensus 488 ~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 488 YLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEESCCCCCEECSS
T ss_pred EEecccCCcCcchh
Confidence 99998888888753
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.21 E-value=3.1e-10 Score=91.21 Aligned_cols=110 Identities=6% Similarity=-0.032 Sum_probs=82.2
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCc
Q psy16881 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE 112 (222)
Q Consensus 33 l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (222)
++++++++++++++.+++|++||..+++.......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--------------------------------------------- 39 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--------------------------------------------- 39 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------------
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec---------------------------------------------
Confidence 46788899999999999999999886654432210
Q ss_pred cccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEeccCC------ccEEEEEEcCCCCEEEEeeCC----
Q psy16881 113 TVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTLESHT------RYVTCCTFSCDDSLLASGSND---- 181 (222)
Q Consensus 113 ~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~------~~V~~~~~s~~~~~l~s~s~D---- 181 (222)
+....+..++|+|+++++ ++...++.|.+||+.+++.+..+..+. ..+..++|+|+|++|++++.+
T Consensus 40 ---~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 40 ---PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 116 (349)
T ss_dssp ---SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred ---CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccc
Confidence 001124568899999855 455678999999999988877665432 236789999999999998865
Q ss_pred --------CeEEEEeCC
Q psy16881 182 --------KTVTIWDML 190 (222)
Q Consensus 182 --------~~i~lwd~~ 190 (222)
+.|.+||+.
T Consensus 117 ~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp SSCEEECCCEEEEEEGG
T ss_pred ccccccCCCeEEEEECC
Confidence 899999973
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.17 E-value=8.5e-09 Score=81.08 Aligned_cols=182 Identities=13% Similarity=0.217 Sum_probs=108.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPTRVG 105 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 105 (222)
..+..++++|+|+++++...++.|++|+.. +.....+...+...........+...........+.. ...+..++
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-- 106 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-- 106 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC--
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC--
Confidence 568889999999998888889999999986 4444433211100000000000111000011111111 11222111
Q ss_pred eeccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec--cCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881 106 VYGQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLLASGSNDK 182 (222)
Q Consensus 106 ~~~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~D~ 182 (222)
..+.....+. .+...+..++++++++++++...++.|.+||.. ++.+..+. .+...+..++++++|+++++.+.++
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 185 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 185 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCC
Confidence 0000001111 233567899999999988887788999999964 55555553 3445689999999999888888889
Q ss_pred eEEEEeCC------------------------CCeEEEeeCCC-cEEEEeCCCCcc
Q psy16881 183 TVTIWDML------------------------ATLLASGSNDK-TVTIWDMRGNLS 213 (222)
Q Consensus 183 ~i~lwd~~------------------------~~~l~s~~~d~-~i~iwd~~~~~~ 213 (222)
.|.+||.. ..++++...++ .|.+||..++..
T Consensus 186 ~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~ 241 (286)
T 1q7f_A 186 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI 241 (286)
T ss_dssp EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred EEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEE
Confidence 99999863 23455555565 899999876543
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=103.00 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=78.5
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCC
Q psy16881 32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS 111 (222)
Q Consensus 32 ~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (222)
.++|+|||++++++ .|++|++|++.++.......
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~--------------------------------------------- 53 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILS--------------------------------------------- 53 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEEC---------------------------------------------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEc---------------------------------------------
Confidence 56899999766665 69999999987654332110
Q ss_pred ccccccC---CCEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceE--EEeccCCccEEEEEEcCCCCEEEE
Q psy16881 112 ETVGRHT---SAVTSVRFNHKSSLLVSGSV---------DKTVKLWDVPSLTCI--KTLESHTRYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 112 ~~~~~h~---~~i~~l~~~~~~~~l~sg~~---------dg~I~iwd~~~~~~~--~~~~~~~~~V~~~~~s~~~~~l~s 177 (222)
.|. ..+..++|+|+|++|++++. ++.|++||+.+++.+ ..+ ...+..++|||+|+.|++
T Consensus 54 ----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~ 126 (719)
T 1z68_A 54 ----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAY 126 (719)
T ss_dssp ----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEE
T ss_pred ----cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEE
Confidence 011 13678999999999998876 789999999988652 122 245788999999999998
Q ss_pred eeCCCeEEEEeC
Q psy16881 178 GSNDKTVTIWDM 189 (222)
Q Consensus 178 ~s~D~~i~lwd~ 189 (222)
++ ++.|++||+
T Consensus 127 ~~-~~~i~~~~~ 137 (719)
T 1z68_A 127 VY-QNNIYLKQR 137 (719)
T ss_dssp EE-TTEEEEESS
T ss_pred EE-CCeEEEEeC
Confidence 86 779999987
No 161
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.15 E-value=1.1e-09 Score=96.17 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=80.9
Q ss_pred ccceEEEEEcCCCCeEEEecCC----------CeEEEEeCCC------CceEEeeccCCCcceeeccceecCccCCcccc
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDD----------ETVTVWRSDD------LSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~D----------g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (222)
...+..++|||||+.|+.++.| .+|++|++.+ +....
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------------------------- 181 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE--------------------------- 181 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE---------------------------
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE---------------------------
Confidence 4567889999999999988877 5788888764 21100
Q ss_pred eeeeeeeeeEeeeeeeeccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEeCC-CC---ceEEEec
Q psy16881 91 VFSTFVKQIIPTRVGVYGQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDK--------TVKLWDVP-SL---TCIKTLE 157 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg--------~I~iwd~~-~~---~~~~~~~ 157 (222)
+. .+...+..++|+|+|++|+.++.++ .|.+||+. ++ +......
T Consensus 182 -----------------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 182 -----------------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp -----------------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred -----------------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 00 1223455678999999988877553 79999998 56 3333344
Q ss_pred cCCccEEEEEEcCCCCEEEEeeCCC--eEEEEeC
Q psy16881 158 SHTRYVTCCTFSCDDSLLASGSNDK--TVTIWDM 189 (222)
Q Consensus 158 ~~~~~V~~~~~s~~~~~l~s~s~D~--~i~lwd~ 189 (222)
++...+..+.|+|+|++++++..++ .|.+||+
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence 5567899999999999888888888 5666664
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.11 E-value=1.5e-09 Score=97.02 Aligned_cols=154 Identities=11% Similarity=0.074 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeec-cceecCccCCcccceeeeeeee---------
Q psy16881 29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIE-GWGRVPACPLCRTRVFSTFVKQ--------- 98 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------- 98 (222)
....++|+|||++|+++ ||+|++|++.++.....+. ++...... .+....++++.+..++......
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEe--chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 35578999999999886 8999999999887654332 11111000 0000122344444444333221
Q ss_pred eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-eccCCccE--------------
Q psy16881 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYV-------------- 163 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V-------------- 163 (222)
+..++. .......+..|...+...+|+|+|+.|+.+. ++.|.+||+.+++.... ..++...+
T Consensus 94 ~~~~d~--~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 94 YDIYDL--NKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEET--TTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEEC--CCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 112221 1112223445677899999999999888885 68999999987765432 22322222
Q ss_pred ---EEEEEcCCCCEEEEeeCCCe-EEEEeC
Q psy16881 164 ---TCCTFSCDDSLLASGSNDKT-VTIWDM 189 (222)
Q Consensus 164 ---~~~~~s~~~~~l~s~s~D~~-i~lwd~ 189 (222)
..+.|||||+.||.++.|.+ +.+|++
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 24889999999998876654 888876
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.11 E-value=2.7e-08 Score=78.18 Aligned_cols=133 Identities=14% Similarity=0.256 Sum_probs=96.3
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (222)
..+..++++|+|+++++...++.|.+|+.. +.......
T Consensus 121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~----------------------------------------- 158 (286)
T 1q7f_A 121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG----------------------------------------- 158 (286)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE-----------------------------------------
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC-----------------------------------------
Confidence 457889999999988887788899999854 22111110
Q ss_pred ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--CccEEEEEEcCCCCEEEEeeCCC-eE
Q psy16881 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--TRYVTCCTFSCDDSLLASGSNDK-TV 184 (222)
Q Consensus 108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~V~~~~~s~~~~~l~s~s~D~-~i 184 (222)
...+...+..++++++++++++...++.|++||.. ++.+..+..+ ...+..++++++|+++++...++ .|
T Consensus 159 ------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 159 ------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp ------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred ------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 00123346789999999888887889999999974 5566666443 35688999999999998888775 99
Q ss_pred EEEeCC------------------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 185 TIWDML------------------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 185 ~lwd~~------------------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
.+||.. ..++++ +.|+.|++|++..
T Consensus 232 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 232 TIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 999863 123444 6788999998753
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.10 E-value=6.3e-09 Score=85.07 Aligned_cols=156 Identities=8% Similarity=0.052 Sum_probs=92.2
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCC-CCceEEeeccCCCcceeeccceecCccCCccc-ceeee-----------
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSD-DLSLIMETNDRGHTQGRIEGWGRVPACPLCRT-RVFST----------- 94 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------- 94 (222)
..+..++|+|+|++|++++.+ +|.+|++. ++............. ... +.+.+.... ..+..
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~--~~~---~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGH--PRA---NDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSS--GGG---GCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCC--Ccc---EEECCCCCEEEEEEecCCcceeccce
Confidence 367889999999999998887 99999986 665433211000000 000 122222221 11111
Q ss_pred ---eeeeeEeeeeeeeccCCcccc----ccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCceE--EEec--cCCc
Q psy16881 95 ---FVKQIIPTRVGVYGQDSETVG----RHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVP-SLTCI--KTLE--SHTR 161 (222)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~-~~~~~--~~~~--~~~~ 161 (222)
....+..+.....+.....+. .+...+..++|+|+|++++++.. ++.|++||+. +++.. ..+. .|..
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 111222222111011001111 13567889999999998887654 6799999998 66542 3333 2345
Q ss_pred cEEEEEEcCCCCEEEEeeC-CCeEEEEeC
Q psy16881 162 YVTCCTFSCDDSLLASGSN-DKTVTIWDM 189 (222)
Q Consensus 162 ~V~~~~~s~~~~~l~s~s~-D~~i~lwd~ 189 (222)
.+..++|+|+|++|++++. ++.+.+|++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 222 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence 6899999999999988775 678888854
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.07 E-value=3.2e-08 Score=79.83 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=71.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEEe---------ccCCccEEEEEEcC-CCCEEEEee-CCCeEE
Q psy16881 118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIKTL---------ESHTRYVTCCTFSC-DDSLLASGS-NDKTVT 185 (222)
Q Consensus 118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~~---------~~~~~~V~~~~~s~-~~~~l~s~s-~D~~i~ 185 (222)
......++++++|+++++...++.|++||..... .+..+ .++-..+..++++| ++.++++.+ .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 3457889999999988888889999999976432 44444 23444688999999 788888886 688999
Q ss_pred EEeCC---------------------------------CCeEEEeeCCCcEEEEeCC-CCccc
Q psy16881 186 IWDML---------------------------------ATLLASGSNDKTVTIWDMR-GNLSV 214 (222)
Q Consensus 186 lwd~~---------------------------------~~~l~s~~~d~~i~iwd~~-~~~~~ 214 (222)
+||.. ..++++...++.|++||+. +++..
T Consensus 170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR 232 (329)
T ss_dssp EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 99852 1234444567789999997 66543
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.07 E-value=4.3e-10 Score=99.75 Aligned_cols=151 Identities=11% Similarity=0.141 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCeEEEecC---------CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeE
Q psy16881 30 MRCVRFSPDTRLLATGGD---------DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQII 100 (222)
Q Consensus 30 v~~l~~spdg~~l~tgs~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (222)
+.+++|||||++|+.++. |++|++||+++++......-. ..+.. ..++++....++.. ...+.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----~~~~~---~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----RPIQY---LCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----SSBCC---EEECSSTTCEEEEE-TTEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----ccccc---ceECCCCCEEEEEE-CCeEE
Confidence 889999999999998876 799999999887652100000 00111 22333333333332 22333
Q ss_pred eeeeeee--------ccCCccccccCCC---------EEEEEEcCCCCEEEEEeCCC-----------------------
Q psy16881 101 PTRVGVY--------GQDSETVGRHTSA---------VTSVRFNHKSSLLVSGSVDK----------------------- 140 (222)
Q Consensus 101 ~~~~~~~--------~~~~~~~~~h~~~---------i~~l~~~~~~~~l~sg~~dg----------------------- 140 (222)
.++.... +.....+.+|... ...++|+|+|+.|++++.|.
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 3321100 0000011122111 14799999999999987652
Q ss_pred -----------cEEEEeCCCCceE---E-----EeccCCccEEEEEEcCCCCEEEEeeCC----CeEEEEe
Q psy16881 141 -----------TVKLWDVPSLTCI---K-----TLESHTRYVTCCTFSCDDSLLASGSND----KTVTIWD 188 (222)
Q Consensus 141 -----------~I~iwd~~~~~~~---~-----~~~~~~~~V~~~~~s~~~~~l~s~s~D----~~i~lwd 188 (222)
.|++||+.+++.. . .+.+|...+..++|||+++++++.... ..|.+||
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 7889999887642 1 234678889999999998877774432 2488889
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.01 E-value=6.6e-09 Score=84.96 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=82.8
Q ss_pred ccceEEEEEcCCCCeEEEecC-CCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGD-DETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~-Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
+..++.++|+|||++|++++. +++|.+|+++ ++....... .+. ..+
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~---~~~--------------------- 240 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH-------SFP---LIP--------------------- 240 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------EEE---SSC---------------------
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------eEE---cCC---------------------
Confidence 456899999999999877664 7899999765 222211000 000 000
Q ss_pred eeeeccCCccccccCC------CEEEEE-EcCCCCEEEEEeCC-C-----cEEEEeCC-CCceEE---EeccCCccEEEE
Q psy16881 104 VGVYGQDSETVGRHTS------AVTSVR-FNHKSSLLVSGSVD-K-----TVKLWDVP-SLTCIK---TLESHTRYVTCC 166 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~------~i~~l~-~~~~~~~l~sg~~d-g-----~I~iwd~~-~~~~~~---~~~~~~~~V~~~ 166 (222)
..+.+|.. .+..++ |+|+|++++++..+ + .|++|++. +++... ....+...+..+
T Consensus 241 --------~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 312 (365)
T 1jof_A 241 --------PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN 312 (365)
T ss_dssp --------TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred --------CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc
Confidence 00011222 467899 99999988776543 2 89999986 565432 233344446678
Q ss_pred EEcC---CCCEEEEeeCC-CeEEEEeCCCCe
Q psy16881 167 TFSC---DDSLLASGSND-KTVTIWDMLATL 193 (222)
Q Consensus 167 ~~s~---~~~~l~s~s~D-~~i~lwd~~~~~ 193 (222)
+|+| +|++|++++.+ +.|.+|++....
T Consensus 313 a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 313 AVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 8999 89999988764 899999986543
No 168
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.96 E-value=8.6e-09 Score=91.41 Aligned_cols=113 Identities=10% Similarity=0.004 Sum_probs=80.9
Q ss_pred cceEEEEEcCCCCeEE-----EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881 28 SNMRCVRFSPDTRLLA-----TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT 102 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~-----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (222)
..+..++|||||++|| .|+.+.+|++||+.++......
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------------------------- 163 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------------------------- 163 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-------------------------------------
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-------------------------------------
Confidence 3588899999999998 5566689999999865422000
Q ss_pred eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCc----eEEEeccCCccEEE
Q psy16881 103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT-------------VKLWDVPSLT----CIKTLESHTRYVTC 165 (222)
Q Consensus 103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~-------------I~iwd~~~~~----~~~~~~~~~~~V~~ 165 (222)
.+.... ...++|+|+|+.|+.++.|.. |++|++.+++ ++.....+...+..
T Consensus 164 ----------~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 164 ----------VIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp ----------CBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred ----------ccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 000001 134789999999998888776 9999998765 34444455567889
Q ss_pred EEEcCCCCEEEEeeCCC----eEEEEeC
Q psy16881 166 CTFSCDDSLLASGSNDK----TVTIWDM 189 (222)
Q Consensus 166 ~~~s~~~~~l~s~s~D~----~i~lwd~ 189 (222)
+.|||+|++|+.++.++ .|.++|.
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 99999999998877665 6666665
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.95 E-value=4.8e-08 Score=78.77 Aligned_cols=182 Identities=10% Similarity=0.044 Sum_probs=102.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc-eEEeeccCC---CcceeeccceecCccCCcccceeee--eeeeeEe
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS-LIMETNDRG---HTQGRIEGWGRVPACPLCRTRVFST--FVKQIIP 101 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 101 (222)
.....++++|+|+++++...+++|++|+.+... .+..+...+ .....+.....+.+.+.......+. ....+..
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 457889999999999999889999999986542 333332110 0000000000011111011111111 1112221
Q ss_pred eeeeeeccCCccc----------cccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEec--cCCccEEEEEE
Q psy16881 102 TRVGVYGQDSETV----------GRHTSAVTSVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTF 168 (222)
Q Consensus 102 ~~~~~~~~~~~~~----------~~h~~~i~~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~V~~~~~ 168 (222)
.+. .+.....+ .++......++++++ ++++++...++.|++||..+++.+..+. .+...+..+++
T Consensus 171 ~~~--~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 171 FSP--SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp ECT--TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred EcC--CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence 110 00000011 112234788999998 6777777788899999998888887774 34556888999
Q ss_pred cC------CCCEEEEeeCCCeEEEEeCC--------------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 169 SC------DDSLLASGSNDKTVTIWDML--------------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 169 s~------~~~~l~s~s~D~~i~lwd~~--------------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
+| +|+..++.+.+..|++||+. +.++++...++.|++|++.+.
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 99 33322223344488888842 235666667788888888643
No 170
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.92 E-value=2.5e-08 Score=82.46 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=78.9
Q ss_pred eccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 26 ~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
+.. |..|+| |+++|+++ .++.|++||+.+.......
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~---------------------------------------- 122 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV---------------------------------------- 122 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE----------------------------------------
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc----------------------------------------
Confidence 345 999999 99999998 8899999998743211000
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
..|...+.++.+.+. .++.++.||.|.+||++++.... +...|+|++|||+| ++.|..||+++
T Consensus 123 ---------~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 123 ---------TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp ---------EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred ---------ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 113334555555433 38889999999999999877643 34579999999999 67889999999
Q ss_pred EEeCCCCe
Q psy16881 186 IWDMLATL 193 (222)
Q Consensus 186 lwd~~~~~ 193 (222)
+|+.....
T Consensus 186 ~~~~~~~~ 193 (388)
T 1xip_A 186 SFAWRNGE 193 (388)
T ss_dssp EEEEETTE
T ss_pred EEcCCCcc
Confidence 99765433
No 171
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.91 E-value=8.7e-08 Score=75.66 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=94.3
Q ss_pred CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCcccccc
Q psy16881 38 DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRH 117 (222)
Q Consensus 38 dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 117 (222)
.+++|++++.|+.|++||.++++.+.++.. +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-------------------------------------------------~ 34 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-------------------------------------------------E 34 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC-------------------------------------------------C
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-------------------------------------------------C
Confidence 458899999999999999988877655421 1
Q ss_pred C-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-ccEEEEEEcCCCCEEEEeeC-CCeEEEEeCC----
Q psy16881 118 T-SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSCDDSLLASGSN-DKTVTIWDML---- 190 (222)
Q Consensus 118 ~-~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~V~~~~~s~~~~~l~s~s~-D~~i~lwd~~---- 190 (222)
. ..+..+.+.|+|++++ +.++.|..||. +++.+.++..+. ..+.++.+.++|+++++.+. ++.+..+|..
T Consensus 35 ~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l 111 (276)
T 3no2_A 35 KGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVL 111 (276)
T ss_dssp TTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEE
T ss_pred ccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEE
Confidence 1 2345677889999888 34778999998 788888887653 46888999999999998876 5566555532
Q ss_pred ------------------------CCeEEEeeCCCcEEEEeCCCCccc
Q psy16881 191 ------------------------ATLLASGSNDKTVTIWDMRGNLSV 214 (222)
Q Consensus 191 ------------------------~~~l~s~~~d~~i~iwd~~~~~~~ 214 (222)
..++++...++.|..||.+++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 112 SKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp EEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred EEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence 246777778899999999877653
No 172
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.89 E-value=5.9e-08 Score=86.20 Aligned_cols=112 Identities=11% Similarity=0.121 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCeEEEecCCC-----eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 29 NMRCVRFSPDTRLLATGGDDE-----TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
.+..++|||||++||.++.++ +|++||+.+++......
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~------------------------------------- 168 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL------------------------------------- 168 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-------------------------------------
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-------------------------------------
Confidence 578899999999998766544 89999988654432110
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCc----------------EEEEeCCCCc----eEEEeccCCccE
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT----------------VKLWDVPSLT----CIKTLESHTRYV 163 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~----------------I~iwd~~~~~----~~~~~~~~~~~V 163 (222)
. ...+..++|+|+|+.|+.++.++. |.+|++.+++ .+.....|...+
T Consensus 169 -----------~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 169 -----------E--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp -----------E--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred -----------c--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 0 011345889999998888887766 9999998765 233333355667
Q ss_pred EEEEEcCCCCEEEEeeC-----CCeEEEEeCC
Q psy16881 164 TCCTFSCDDSLLASGSN-----DKTVTIWDML 190 (222)
Q Consensus 164 ~~~~~s~~~~~l~s~s~-----D~~i~lwd~~ 190 (222)
..+.|||+|++|+.++. +..|.+||+.
T Consensus 236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp EEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 88999999999987764 5689999874
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.87 E-value=9e-08 Score=83.96 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=94.4
Q ss_pred ccceEEEEEcCCCCeEEEe--cCCCeEEEEeCCCCceEEeeccCCCc-ceeeccceecCc----cCCccc-ceeeeee-e
Q psy16881 27 GSNMRCVRFSPDTRLLATG--GDDETVTVWRSDDLSLIMETNDRGHT-QGRIEGWGRVPA----CPLCRT-RVFSTFV-K 97 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tg--s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~-~~~~~~~-~ 97 (222)
+..+..++|++++-+++.. +.+++..||................. ...+..+..... +++... .++.... .
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence 5678999999887777777 66889999985433222222111100 000000000000 122333 3333221 1
Q ss_pred eeEeeeeeee--c-cCCccccc-----cCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCC------CceE
Q psy16881 98 QIIPTRVGVY--G-QDSETVGR-----HTSAVTSVRFNHKSSLLVSGSVD----------KTVKLWDVPS------LTCI 153 (222)
Q Consensus 98 ~~~~~~~~~~--~-~~~~~~~~-----h~~~i~~l~~~~~~~~l~sg~~d----------g~I~iwd~~~------~~~~ 153 (222)
.+...+ .. + .....+.. |...+..++|+|+|+.|+.++.+ ..|.+||+.+ ++.
T Consensus 103 ~l~~~~--~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 179 (662)
T 3azo_A 103 RLYAFE--PDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV- 179 (662)
T ss_dssp CEEEEC--TTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-
T ss_pred eEEEEc--CCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-
Confidence 121111 11 1 22222333 56678899999999999988877 5899999987 543
Q ss_pred EEec-cCCccEEEEEEcCCCCEEEEeeCCC--------eEEEEeCC
Q psy16881 154 KTLE-SHTRYVTCCTFSCDDSLLASGSNDK--------TVTIWDML 190 (222)
Q Consensus 154 ~~~~-~~~~~V~~~~~s~~~~~l~s~s~D~--------~i~lwd~~ 190 (222)
..+. .+...+..++|||+|+.|+.++.++ .|.+||+.
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence 4555 5567788899999999999877553 68888764
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.84 E-value=1.4e-07 Score=77.05 Aligned_cols=154 Identities=14% Similarity=0.027 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCccccee-----------------
Q psy16881 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVF----------------- 92 (222)
Q Consensus 30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 92 (222)
+..++|+|||+.|+.++.++.|++||+.+++............. ...+. ..........
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~-~~~~~---~~~dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVG-YGTWV---ANSDCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE-EEEEE---ECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhccc-cccee---ECCCCCeeccccccCcccccccccchh
Confidence 33568999999999999999999999988765433211111000 00000 0000000000
Q ss_pred -----eeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCceEEEeccCC
Q psy16881 93 -----STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVD------KTVKLWDVPSLTCIKTLESHT 160 (222)
Q Consensus 93 -----~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~~ 160 (222)
......+..++. .......+..+...+..++|+| +|+.++....+ ..|.++|....+ ...+..+.
T Consensus 159 ~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~ 235 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDL--KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHA 235 (388)
T ss_dssp HHHGGGCCCEEEEEEET--TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCC
T ss_pred hhhhccCCcceEEEEEC--CCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCC
Confidence 000011111111 1112223334566788999999 99888776653 367778876543 34444444
Q ss_pred --ccEEEEEEcCCCCEEEEeeCC-----CeEEEEeCC
Q psy16881 161 --RYVTCCTFSCDDSLLASGSND-----KTVTIWDML 190 (222)
Q Consensus 161 --~~V~~~~~s~~~~~l~s~s~D-----~~i~lwd~~ 190 (222)
..+....|+|+|+.|+..+.+ +.|.+||+.
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence 357788999999987664432 239999974
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.83 E-value=9.6e-07 Score=70.67 Aligned_cols=134 Identities=9% Similarity=0.049 Sum_probs=92.0
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
...+..++|+|+|++++++..++.|.+|+.+++......
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------------- 82 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF----------------------------------------- 82 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-----------------------------------------
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-----------------------------------------
Confidence 345788999999998888888999999987654321100
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCceEEEec--cCCccEEEEEEcCCCCEEEEeeC
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD----KTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLLASGSN 180 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d----g~I~iwd~~~~~~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~ 180 (222)
..+...+.+++++++++++++...+ +.|.+||..+++....+. .+...+..+.++++|+++++...
T Consensus 83 --------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 154 (333)
T 2dg1_A 83 --------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR 154 (333)
T ss_dssp --------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred --------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence 0123457889999999987777666 689999988765543332 23456889999999998887653
Q ss_pred ------CCeEEEEeCC----------------------CCeE-EEeeCCCcEEEEeCC
Q psy16881 181 ------DKTVTIWDML----------------------ATLL-ASGSNDKTVTIWDMR 209 (222)
Q Consensus 181 ------D~~i~lwd~~----------------------~~~l-~s~~~d~~i~iwd~~ 209 (222)
.+.|..+|.. ...+ ++.+.++.|.+||++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 155 GYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp CBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence 2445555532 2223 444456789999985
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.81 E-value=3.2e-07 Score=75.07 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=56.2
Q ss_pred EEEcCCCCEEEEEeC-----------CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCCC
Q psy16881 124 VRFNHKSSLLVSGSV-----------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLAT 192 (222)
Q Consensus 124 l~~~~~~~~l~sg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~~ 192 (222)
++++++++.++.+.. .+.|.+||+.+++.+..+..+. +..++|+|+|++|++++. ++|.+||..+.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 678999887776543 3479999999999999998877 889999999999998887 99999998754
No 177
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.80 E-value=3.6e-07 Score=72.10 Aligned_cols=134 Identities=8% Similarity=-0.016 Sum_probs=97.1
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (222)
..+.+++++|+|++|++ .++.|+.||. +++.+.++..
T Consensus 37 ~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~---------------------------------------- 73 (276)
T 3no2_A 37 WECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAA---------------------------------------- 73 (276)
T ss_dssp CCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEEC----------------------------------------
T ss_pred CCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcC----------------------------------------
Confidence 35788899999998883 5788999988 6665554310
Q ss_pred ccCCccccccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceEEEecc------CCccEEEEEEcCCCCEEEEeeC
Q psy16881 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSV-DKTVKLWDVPSLTCIKTLES------HTRYVTCCTFSCDDSLLASGSN 180 (222)
Q Consensus 108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~------~~~~V~~~~~s~~~~~l~s~s~ 180 (222)
+....+.++++.++|+++++.+. ++.|..+|. +++.+.++.. +......+++.++|+++++.+.
T Consensus 74 --------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 74 --------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp --------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred --------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence 01123556778899999998887 677777775 6777666542 2223455678899999999999
Q ss_pred CCeEEEEeCC---------------------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 181 DKTVTIWDML---------------------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 181 D~~i~lwd~~---------------------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
++.|..||.. ...+++++.++.|..+|.. ++..
T Consensus 145 ~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 145 TSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp TTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred CCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 9999999974 3457777777789999988 7664
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.80 E-value=7.1e-07 Score=77.47 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=90.5
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
+..+..+.|+|||++|++++.|+.|.+||+. +.+.+.+..
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~-------------------------------------- 237 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-------------------------------------- 237 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--------------------------------------
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--------------------------------------
Confidence 4557789999999999999999999999985 332222110
Q ss_pred eeeccCCccccccCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEeCCCCceEEEeccC-----------CccEEEEEE
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFN----HKSSLLVSGSV-DKTVKLWDVPSLTCIKTLESH-----------TRYVTCCTF 168 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~----~~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~-----------~~~V~~~~~ 168 (222)
.......++|+ |+|+++++++. ++.|.|+|..+.+.+..+... ...+..+..
T Consensus 238 ------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 238 ------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp ------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred ------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 01123568898 69987777655 589999999998887765421 124667777
Q ss_pred cCCCCEEE-EeeCCCeEEEEeCC------------------------CCeE-EEeeCCCcEEEEeCCC
Q psy16881 169 SCDDSLLA-SGSNDKTVTIWDML------------------------ATLL-ASGSNDKTVTIWDMRG 210 (222)
Q Consensus 169 s~~~~~l~-s~s~D~~i~lwd~~------------------------~~~l-~s~~~d~~i~iwd~~~ 210 (222)
++++..++ ....+|+|.++|.. ..++ ++...+++|.++|+++
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 77765444 44556777777642 2333 4444567888898873
No 179
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.80 E-value=6e-08 Score=80.18 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881 29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG 108 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (222)
.++.+++++...+|++|+.+ .+.+|+.++.+...... . ..+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~-~----~~~--------------------------------- 79 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSD-S----TPL--------------------------------- 79 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSS-S----CCC---------------------------------
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccc-c----ccc---------------------------------
Confidence 58889999999999999987 56669865432100000 0 000
Q ss_pred cCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881 109 QDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188 (222)
Q Consensus 109 ~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd 188 (222)
+......+.. |..++| ++++|+++ .++.|++||+.+.........++..+.++.+.+. .+++++.||.+.+||
T Consensus 80 -~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~d 152 (388)
T 1xip_A 80 -TFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALD 152 (388)
T ss_dssp -CCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEE
T ss_pred -cceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEE
Confidence 0000012455 999999 78999988 8899999999877666666677777887776543 388899999999999
Q ss_pred CCC-----------------CeEEEeeCCCcEEEEeCCCCc
Q psy16881 189 MLA-----------------TLLASGSNDKTVTIWDMRGNL 212 (222)
Q Consensus 189 ~~~-----------------~~l~s~~~d~~i~iwd~~~~~ 212 (222)
+.. .-++.|..|++|++|+..+..
T Consensus 153 l~~~~~~~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 153 LRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp TTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE
T ss_pred ccCCccccccCCceEEEEcCCceEEEEcCCcEEEEcCCCcc
Confidence 851 236778899999999887543
No 180
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.79 E-value=3e-07 Score=74.99 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=65.7
Q ss_pred EEEcCCCCeEEEecC-CCe--EEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeecc
Q psy16881 33 VRFSPDTRLLATGGD-DET--VTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQ 109 (222)
Q Consensus 33 l~~spdg~~l~tgs~-Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (222)
.+|||||++|+.++. +|. |.+||+.++......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-------------------------------------------- 76 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-------------------------------------------- 76 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC--------------------------------------------
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee--------------------------------------------
Confidence 689999999888887 774 677777654332111
Q ss_pred CCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEE--EcCCCCEEEE
Q psy16881 110 DSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCT--FSCDDSLLAS 177 (222)
Q Consensus 110 ~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~--~s~~~~~l~s 177 (222)
..+...+..+.|+|+++.|+.++.++.|.+||+.+++.......+...+.... +++++.+++.
T Consensus 77 -----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 77 -----EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp -----CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred -----eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence 01222222356999999999999889999999998876655555555554333 4788888874
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.77 E-value=5.3e-07 Score=69.86 Aligned_cols=135 Identities=7% Similarity=-0.021 Sum_probs=91.6
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (222)
..+..++++|+|+++++...++.|.+|+..+......
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~------------------------------------------- 144 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL------------------------------------------- 144 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-------------------------------------------
T ss_pred CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-------------------------------------------
Confidence 4577888888888777777778888885432111000
Q ss_pred ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187 (222)
Q Consensus 108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw 187 (222)
.......+..++++++++++++...++.|.+||............+...+..++++++|.++++...++.|.+|
T Consensus 145 ------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 145 ------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp ------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred ------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 00011234568889989877777778899999987665443333333568899999999888887778899999
Q ss_pred eCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 188 DML-----------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 188 d~~-----------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
|.. ..++++...++.|+++++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 219 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred cCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 863 234555556777888877644
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.75 E-value=3.9e-07 Score=74.28 Aligned_cols=155 Identities=12% Similarity=-0.005 Sum_probs=83.9
Q ss_pred EEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCC-c-ceeecccee-----------cCccCCcccceee-----e
Q psy16881 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH-T-QGRIEGWGR-----------VPACPLCRTRVFS-----T 94 (222)
Q Consensus 33 l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~-~-~~~~~~~~~-----------~~~~~~~~~~~~~-----~ 94 (222)
+.|+|||++|+.++.++.|++|++.++........... . .+....+.. ....+......+. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN 165 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence 67999999999999999999999987664432211110 0 000000000 0011111111100 0
Q ss_pred eeeeeEeeeeeeeccCCccccccCCCEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCceEEEeccC--CccEEE
Q psy16881 95 FVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVD------KTVKLWDVPSLTCIKTLESH--TRYVTC 165 (222)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~--~~~V~~ 165 (222)
....+..++. .......+..+...+..+.|+| +++.++..+.+ ..|.+||+..++. ..+..+ ...+..
T Consensus 166 ~~~~l~~~d~--~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 166 PTCRLIKVDI--ETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTH 242 (396)
T ss_dssp CCEEEEEEET--TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEE
T ss_pred CcceEEEEEC--CCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccc
Confidence 1111222211 1111112223566788899999 77766665543 3588888865543 333333 235788
Q ss_pred EEEcCCCCEEEEeeCC-----CeEEEEeCC
Q psy16881 166 CTFSCDDSLLASGSND-----KTVTIWDML 190 (222)
Q Consensus 166 ~~~s~~~~~l~s~s~D-----~~i~lwd~~ 190 (222)
+.|+|+|+.|+.++.+ +.|.+||+.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECC
Confidence 9999999988776544 449999873
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.72 E-value=1.8e-06 Score=69.57 Aligned_cols=177 Identities=10% Similarity=0.057 Sum_probs=104.4
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCC-----cceeeccceecCccCCcccceeeee---eee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH-----TQGRIEGWGRVPACPLCRTRVFSTF---VKQ 98 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 98 (222)
......+++++++++.++...+++|.+||..+.+.......... .+..+. . .....+... ...
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~------~---~~~~lyv~~~~~~~~ 153 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV------Q---YGKYVYVNCWSYQNR 153 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE------E---ETTEEEEEECTTCCE
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE------E---ECCEEEEEcCCCCCE
Confidence 46678899999996655555899999999998876654421110 110000 0 011111111 112
Q ss_pred eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCceEEEeccC-CccEEEEE
Q psy16881 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD----------KTVKLWDVPSLTCIKTLESH-TRYVTCCT 167 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d----------g~I~iwd~~~~~~~~~~~~~-~~~V~~~~ 167 (222)
+...+... ......+. .......+.++++|++++++..+ +.|.++|..+++....+... ...+..++
T Consensus 154 v~viD~~t-~~~~~~i~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la 231 (328)
T 3dsm_A 154 ILKIDTET-DKVVDELT-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQ 231 (328)
T ss_dssp EEEEETTT-TEEEEEEE-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEE
T ss_pred EEEEECCC-CeEEEEEE-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEE
Confidence 22211100 00000111 11223567889999877776554 78999999988877666432 23578999
Q ss_pred EcCCCCEEEEeeCCCeEEEEeCC--------------------------CCeEEEe----eCCCcEEEEeCCCCccccC
Q psy16881 168 FSCDDSLLASGSNDKTVTIWDML--------------------------ATLLASG----SNDKTVTIWDMRGNLSVDV 216 (222)
Q Consensus 168 ~s~~~~~l~s~s~D~~i~lwd~~--------------------------~~~l~s~----~~d~~i~iwd~~~~~~~~~ 216 (222)
|+|+++.|+++.. .|.+||.. ..+.++. ..++.|.+||..+++...+
T Consensus 232 ~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i 308 (328)
T 3dsm_A 232 LNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF 308 (328)
T ss_dssp ECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEE
T ss_pred EecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEE
Confidence 9999999887754 78888863 1234444 4577899999887665443
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.71 E-value=1.2e-06 Score=69.11 Aligned_cols=157 Identities=10% Similarity=-0.026 Sum_probs=90.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeee----------
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFV---------- 96 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 96 (222)
...+..++++|+|+++++...++.|.+|+..+++.......... ........+...+... .+.+..
T Consensus 68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~ 143 (296)
T 3e5z_A 68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG--KKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEG 143 (296)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT--EECCCCCCEEECTTSC--EEEEECSHHHHCGGGS
T ss_pred CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC--CCCCCCCCEEECCCCC--EEEECCcccccccccc
Confidence 46688999999999988887789999999876654322110000 0000000001111111 111000
Q ss_pred -------eeeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCce---EEEeccCCccEEE
Q psy16881 97 -------KQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-SLTC---IKTLESHTRYVTC 165 (222)
Q Consensus 97 -------~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~-~~~~---~~~~~~~~~~V~~ 165 (222)
.....+..... .....+..+......++|+|+++.+++.+.++.|.+||+. +++. ...+..+...+..
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~ 222 (296)
T 3e5z_A 144 YGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG 222 (296)
T ss_dssp SCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS
T ss_pred ccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe
Confidence 00011111000 1111223345567889999999988888888999999986 4443 2233334455678
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881 166 CTFSCDDSLLASGSNDKTVTIWDML 190 (222)
Q Consensus 166 ~~~s~~~~~l~s~s~D~~i~lwd~~ 190 (222)
++++++|+++++. ++.|.+||..
T Consensus 223 i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 223 LRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEEBTTSCEEEEE--TTEEEEECTT
T ss_pred EEECCCCCEEEEc--CCeEEEECCC
Confidence 9999999977666 7889999874
No 185
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.70 E-value=2.2e-07 Score=82.91 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=84.9
Q ss_pred EEEEEcCCCCeEEEecCC---------CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881 31 RCVRFSPDTRLLATGGDD---------ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP 101 (222)
Q Consensus 31 ~~l~~spdg~~l~tgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (222)
..++|||||++|+.++.+ +.+.+||+.++....... +. .... ...++++....++.. ...+..
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~---~~-~~~~---~~~~SPdG~~la~~~-~~~i~~ 136 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER---IP-NNTQ---WVTWSPVGHKLAYVW-NNDIYV 136 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CC-TTEE---EEEECSSTTCEEEEE-TTEEEE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc---CC-Ccce---eeEECCCCCEEEEEE-CCeEEE
Confidence 347899999999998876 556799998876542111 10 0011 122334444333332 112222
Q ss_pred eeeee--------eccCCccccccC---------CCEEEEEEcCCCCEEEEEeCCC------------------------
Q psy16881 102 TRVGV--------YGQDSETVGRHT---------SAVTSVRFNHKSSLLVSGSVDK------------------------ 140 (222)
Q Consensus 102 ~~~~~--------~~~~~~~~~~h~---------~~i~~l~~~~~~~~l~sg~~dg------------------------ 140 (222)
++... .+.....+.++. .....++|+|+|+.|+.++.|.
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 21100 000000111111 1123488999999888875332
Q ss_pred ------------cEEEEeCCC---Cc--eEEEec------cCCccEEEEEEcCCCCEEEEeeC----CCeEEEEeC
Q psy16881 141 ------------TVKLWDVPS---LT--CIKTLE------SHTRYVTCCTFSCDDSLLASGSN----DKTVTIWDM 189 (222)
Q Consensus 141 ------------~I~iwd~~~---~~--~~~~~~------~~~~~V~~~~~s~~~~~l~s~s~----D~~i~lwd~ 189 (222)
.|.+||+.+ ++ ....+. +|...+..++|+|+|+.++.... +..|.+||+
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence 478899987 63 223343 37788999999999997765533 347888884
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.70 E-value=2.6e-06 Score=65.89 Aligned_cols=175 Identities=7% Similarity=0.007 Sum_probs=98.5
Q ss_pred ceEEEEEcCCCCeEE-EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881 29 NMRCVRFSPDTRLLA-TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107 (222)
Q Consensus 29 ~v~~l~~spdg~~l~-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (222)
....++++++|++++ +...++.|..|+..+....... ...... ... +....... ...+.....+...+. .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~-p~~---i~~~~~g~-l~v~~~~~~i~~~d~--~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQ-PQG---LAVDGAGT-VYVTDFNNRVVTLAA--G 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC--CCSCCS-CCC---EEECTTCC-EEEEETTTEEEEECT--T
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe--eCCcCC-cce---eEECCCCC-EEEEcCCCEEEEEeC--C
Confidence 577899999999777 5577899999987544322111 000000 000 00111111 111111112221110 0
Q ss_pred ccCCcccc-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881 108 GQDSETVG-RHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 108 ~~~~~~~~-~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l 186 (222)
+.....+. .....+..++++++++.+++...++.|.+|+..+.............+..++++++|+++++...++.|.+
T Consensus 96 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 96 SNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp CSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred CceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 11111111 12256789999999997777777889999987655433322233345778999999998877777889999
Q ss_pred EeCC-----------------------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881 187 WDML-----------------------ATLLASGSNDKTVTIWDMRGNL 212 (222)
Q Consensus 187 wd~~-----------------------~~~l~s~~~d~~i~iwd~~~~~ 212 (222)
||.. +.+.++...++.|.+||..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 9863 2344544557789999987654
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.58 E-value=2.8e-06 Score=75.39 Aligned_cols=72 Identities=6% Similarity=-0.047 Sum_probs=49.4
Q ss_pred cCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCC------Cc-eEEEeccCCccEEEEEEcCCCCEEEEeeCC---
Q psy16881 117 HTSAVTSVRFNHKSSLLVSGSV-----DKTVKLWDVPS------LT-CIKTLESHTRYVTCCTFSCDDSLLASGSND--- 181 (222)
Q Consensus 117 h~~~i~~l~~~~~~~~l~sg~~-----dg~I~iwd~~~------~~-~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D--- 181 (222)
|...+..+.|+|+|++++..+. +..|.+||+.+ +. ....+..+...+.. .|+++|..|+..+..
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence 3445677899999998777764 56899999875 42 34555555555544 478888877766543
Q ss_pred -CeEEEEeC
Q psy16881 182 -KTVTIWDM 189 (222)
Q Consensus 182 -~~i~lwd~ 189 (222)
+.|.+||+
T Consensus 310 ~~~l~~~d~ 318 (710)
T 2xdw_A 310 NYRLINIDF 318 (710)
T ss_dssp TCEEEEEET
T ss_pred CCEEEEEeC
Confidence 36888876
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.57 E-value=8.6e-07 Score=71.23 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCEEEEEeCC---------------------------CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC
Q psy16881 121 VTSVRFNHKSSLLVSGSVD---------------------------KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS 173 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~d---------------------------g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~ 173 (222)
+..++|+|+|+.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|+|
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg- 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence 6778889988877776532 5688999988776444444 3 67889999999
Q ss_pred EEEEeeCC
Q psy16881 174 LLASGSND 181 (222)
Q Consensus 174 ~l~s~s~D 181 (222)
+++++..+
T Consensus 183 ~~~~~~~~ 190 (347)
T 2gop_A 183 IVVNVPHR 190 (347)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 77777654
No 189
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.52 E-value=1.5e-06 Score=71.10 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=45.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceEEEeccCCccEEEEEEcCCCC
Q psy16881 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCDDS 173 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~~~ 173 (222)
+..++|+|+|+++++++. +.|.+||..++ +.+..+...-.....++++|+|+
T Consensus 307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 678999999999998887 99999999999 88888766666778899999985
No 190
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.52 E-value=9.7e-07 Score=78.81 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCeEEEecCC-----CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 29 NMRCVRFSPDTRLLATGGDD-----ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
.+..++|||||++||.++.+ .+|++||+.+++......
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------------------------------------- 206 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------------------------------------- 206 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-------------------------------------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-------------------------------------
Confidence 57789999999999877654 469999988665432100
Q ss_pred eeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCc--------------EEEEeCCCCc----eEEEeccCCccEEE
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT--------------VKLWDVPSLT----CIKTLESHTRYVTC 165 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~--------------I~iwd~~~~~----~~~~~~~~~~~V~~ 165 (222)
+...+..++|+|+ +.|+.++.++. |.+|++.+++ .+.....+...+..
T Consensus 207 -------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 207 -------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp -------------EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred -------------CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 0001124668888 77777766543 8899987654 33333334446889
Q ss_pred EEEcCCCCEEEEeeCCC-----eEEEEeC
Q psy16881 166 CTFSCDDSLLASGSNDK-----TVTIWDM 189 (222)
Q Consensus 166 ~~~s~~~~~l~s~s~D~-----~i~lwd~ 189 (222)
+.|||+|++|+..+.++ .|.+||+
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~ 301 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARV 301 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence 99999999988777543 7888886
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.52 E-value=5.2e-06 Score=65.37 Aligned_cols=106 Identities=9% Similarity=0.070 Sum_probs=74.5
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCC-CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSD-DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVG 105 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222)
......++|+|+|++|++.+.++.|.+|++. ++...... .
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~---------------------------------------~ 211 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG---------------------------------------V 211 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE---------------------------------------E
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC---------------------------------------e
Confidence 3456789999999988888888999999875 22210000 0
Q ss_pred eeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEE-cCCCCEEEEeeCCC
Q psy16881 106 VYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTF-SCDDSLLASGSNDK 182 (222)
Q Consensus 106 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~-s~~~~~l~s~s~D~ 182 (222)
.. ..+...+..++++++|+++++. ++.|.+||.. ++.+..+..+.. +.+++| +++++.|+.++.++
T Consensus 212 ~~-------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 212 HF-------TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp EE-------CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred Ee-------eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 00 0012223457899999866665 7899999976 777777777766 889999 58888888888764
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.51 E-value=7.2e-05 Score=58.24 Aligned_cols=113 Identities=7% Similarity=-0.024 Sum_probs=78.5
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
...+.+++++++|+++++...++.|..|+.. +.... .. .
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~--------------~------------------------- 52 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YP--------------L------------------------- 52 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EE--------------C-------------------------
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ec--------------C-------------------------
Confidence 4678999999999988887778999999875 32111 00 0
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-EEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC-IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
..+...+..++++++++++++...++.|..||.. ++. ..........+..++++++++++++...++.|.
T Consensus 53 --------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 123 (299)
T 2z2n_A 53 --------PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIG 123 (299)
T ss_dssp --------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred --------CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEE
Confidence 0012346778888888877777767889999876 332 122222345688899999998888777777888
Q ss_pred EEeC
Q psy16881 186 IWDM 189 (222)
Q Consensus 186 lwd~ 189 (222)
.||.
T Consensus 124 ~~d~ 127 (299)
T 2z2n_A 124 RITD 127 (299)
T ss_dssp EECT
T ss_pred EECC
Confidence 8875
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.48 E-value=3.7e-05 Score=61.29 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=87.5
Q ss_pred ccceEEEEEcCCCCeEEEecCC----CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee-----
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDD----ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK----- 97 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 97 (222)
...+.+++++|+|+++++...+ +.|.+|+.++............. ..... +...+... ........
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~---i~~d~~g~-l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA-YCIDD---MVFDSKGG-FYFTDFRGYSTNP 160 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC-CCEEE---EEECTTSC-EEEEECCCBTTBC
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC-Ccccc---eEECCCCC-EEEEeccccccCC
Confidence 4668999999999988877666 68999998776543222111100 00000 01111111 11111100
Q ss_pred eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC-CceEE--------EeccCCccEEEEE
Q psy16881 98 QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPS-LTCIK--------TLESHTRYVTCCT 167 (222)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~-~~~~~--------~~~~~~~~V~~~~ 167 (222)
....+...........+..+...+..++|+++++.+ ++.+.++.|.+||..+ ++.+. .+.++ ..+..++
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred CceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 001111100000111111223457789999999855 4555678999999863 33221 11222 4678899
Q ss_pred EcCCCCEEEEeeCCCeEEEEeCC
Q psy16881 168 FSCDDSLLASGSNDKTVTIWDML 190 (222)
Q Consensus 168 ~s~~~~~l~s~s~D~~i~lwd~~ 190 (222)
++++|+++++...++.|.+||..
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTT
T ss_pred ECCCCCEEEEEcCCCEEEEECCC
Confidence 99999988888788899999874
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.48 E-value=8.5e-06 Score=65.32 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=46.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceEEEeccCCccEEE-EEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881 119 SAVTSVRFNHKSSLLVSGSVD--------KTVKLWDVPSLTCIKTLESHTRYVTC-CTFSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~~d--------g~I~iwd~~~~~~~~~~~~~~~~V~~-~~~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
..+..+ +|+|+.++.++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.++|| +
T Consensus 217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 344444 8999887776644 3688888 55544444556677886 8999 88 88899999999999 6
Q ss_pred C
Q psy16881 190 L 190 (222)
Q Consensus 190 ~ 190 (222)
.
T Consensus 290 ~ 290 (347)
T 2gop_A 290 W 290 (347)
T ss_dssp E
T ss_pred c
Confidence 3
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.43 E-value=0.00019 Score=55.79 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=87.0
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVG 105 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 105 (222)
...+.+++++++|++.++...++.|.+|+.. +.... ......... ... +...... ....... ...+...+..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~-~~~---i~~~~~g-~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAK-VMC---LIVSSLG-DIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCC-EEE---EEECTTS-CEEEEETTTTEEEEECTT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCc-cee---EEECCCC-CEEEEecCCCeEEEECCC
Confidence 4578899999999988887788999999987 44332 111110000 000 0000000 0111111 0111111100
Q ss_pred eeccC-CccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881 106 VYGQD-SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSLLASGSNDKT 183 (222)
Q Consensus 106 ~~~~~-~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~~ 183 (222)
+.. ..........+..++++++++++++...++.|..+|.. ++... .+......+..+++++++++.++...++.
T Consensus 92 --g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 92 --GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp --SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred --CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 000 00111123567889999999888877778899999987 55432 23333456889999999997777666777
Q ss_pred EEEEeC
Q psy16881 184 VTIWDM 189 (222)
Q Consensus 184 i~lwd~ 189 (222)
|..+|.
T Consensus 169 i~~~~~ 174 (300)
T 2qc5_A 169 IGRITN 174 (300)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 888875
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.40 E-value=1e-05 Score=70.26 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=79.0
Q ss_pred CCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCccccc
Q psy16881 37 PDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGR 116 (222)
Q Consensus 37 pdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (222)
|.+.++++...+++|.++|..+.+.+....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-------------------------------------------------- 194 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-------------------------------------------------- 194 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE--------------------------------------------------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe--------------------------------------------------
Confidence 445577888889999999988765543321
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceEEEeccCCccEEEEEEc----CCCCEEEEee-CCCeEEEEeC
Q psy16881 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP--SLTCIKTLESHTRYVTCCTFS----CDDSLLASGS-NDKTVTIWDM 189 (222)
Q Consensus 117 h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~--~~~~~~~~~~~~~~V~~~~~s----~~~~~l~s~s-~D~~i~lwd~ 189 (222)
....+..+.++|+|+++++++.|+.|.+||+. +.+.+.++..... ...++|+ |+|++++++. .++++.++|.
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 11234578899999999999999999999995 7788887766443 5789999 6999888766 4589999996
Q ss_pred C
Q psy16881 190 L 190 (222)
Q Consensus 190 ~ 190 (222)
.
T Consensus 274 ~ 274 (567)
T 1qks_A 274 E 274 (567)
T ss_dssp T
T ss_pred C
Confidence 4
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.40 E-value=7.6e-06 Score=67.49 Aligned_cols=126 Identities=13% Similarity=0.059 Sum_probs=91.3
Q ss_pred EEcCCCCeEEEecC-----CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeec
Q psy16881 34 RFSPDTRLLATGGD-----DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYG 108 (222)
Q Consensus 34 ~~spdg~~l~tgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (222)
...|+++.|.+... +++|.+.|..+.+.+.+.. .
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------------------------v---- 77 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------------------------G---- 77 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------------------------E----
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------------------------C----
Confidence 45799998777665 6899999987765543321 0
Q ss_pred cCCccccccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccCC-------ccEEEEEEcCC
Q psy16881 109 QDSETVGRHTSAVTSVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESHT-------RYVTCCTFSCD 171 (222)
Q Consensus 109 ~~~~~~~~h~~~i~~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~-------~~V~~~~~s~~ 171 (222)
+ ..+ . +.++|+|++++.++ .++.|.+||..+.+.+.++.... .....+.|+|+
T Consensus 78 -------G-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD 147 (386)
T 3sjl_D 78 -------G-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 147 (386)
T ss_dssp -------C-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred -------C-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC
Confidence 0 112 3 88999999877765 36789999999999888774321 12456899999
Q ss_pred CCEEEEeeC--CCeEEEEeCCC--------------------CeEEEeeCCCcEEEEeCCC
Q psy16881 172 DSLLASGSN--DKTVTIWDMLA--------------------TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 172 ~~~l~s~s~--D~~i~lwd~~~--------------------~~l~s~~~d~~i~iwd~~~ 210 (222)
|++++++.. ++.|.++|+.+ ..+++.+.||++-+.++..
T Consensus 148 Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 148 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCC
Confidence 999988763 68999999852 2345677899998998863
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.40 E-value=0.00015 Score=56.41 Aligned_cols=174 Identities=9% Similarity=0.017 Sum_probs=98.7
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeee-eeeeeEeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFST-FVKQIIPTRVG 105 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 105 (222)
...+..++++++|+++++...++.|..|+................. .. +....... ...+. ....+...+.
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~---~~---i~~~~~g~-l~v~~~~~~~i~~~d~- 127 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAP---YG---ITEGPNGD-IWFTEMNGNRIGRITD- 127 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCE---EE---EEECTTSC-EEEEETTTTEEEEECT-
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCc---ee---eEECCCCC-EEEEecCCceEEEECC-
Confidence 4568899999999988887778999999876221111111000000 00 00001110 11111 0111111110
Q ss_pred eeccCCc--cccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-eccCCccEEEEEEcCCCCEEEEeeCCC
Q psy16881 106 VYGQDSE--TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT-LESHTRYVTCCTFSCDDSLLASGSNDK 182 (222)
Q Consensus 106 ~~~~~~~--~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~V~~~~~s~~~~~l~s~s~D~ 182 (222)
..... ....+...+..+.++++++.+++...++.|..||. +++.... ...+...+..+++++++++.++...++
T Consensus 128 --~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 128 --DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp --TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred --CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence 00000 01113356789999999988877777789999998 5654332 333445688999999999877776677
Q ss_pred eEEEEeCC-----------------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 183 TVTIWDML-----------------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 183 ~i~lwd~~-----------------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
.|..||.. ..+.++...++.|..||..+.
T Consensus 205 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~ 256 (299)
T 2z2n_A 205 KIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNI 256 (299)
T ss_dssp EEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTE
T ss_pred eEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCc
Confidence 88888762 123333335677888887643
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.37 E-value=2.3e-05 Score=69.44 Aligned_cols=151 Identities=10% Similarity=-0.021 Sum_probs=83.0
Q ss_pred EEEEEcCCCCeEEEecCCCe-------------EEEEeCCCCce--EEeeccCCCcceeeccceecCccCCcccceeeee
Q psy16881 31 RCVRFSPDTRLLATGGDDET-------------VTVWRSDDLSL--IMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF 95 (222)
Q Consensus 31 ~~l~~spdg~~l~tgs~Dg~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (222)
..++|+|||+.|+.++.|.. |++|++.+... ........+. ..+.. ...+++.+..++...
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~-~~~~~---~~~SpDG~~l~~~~~ 246 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP-TTFLQ---SDLSRDGKYLFVYIL 246 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT-TCEEE---EEECTTSCCEEEEEE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC-EEEEE---EEECCCCCEEEEEEe
Confidence 57899999999999988876 99999986652 1111111110 00111 112233333333222
Q ss_pred ee----eeEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCce--EEEeccC--CccEE
Q psy16881 96 VK----QIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGS---VDKTVKLWDVPSLTC--IKTLESH--TRYVT 164 (222)
Q Consensus 96 ~~----~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~---~dg~I~iwd~~~~~~--~~~~~~~--~~~V~ 164 (222)
.. .+...+ ........+..+...+....+ +++++++... .++.|.+||+.+++. ...+..+ ...+.
T Consensus 247 ~~~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 247 RGWSENDVYWKR--PGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL 323 (695)
T ss_dssp ETTTEEEEEEEC--TTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred CCCCceEEEEEc--CCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence 21 122111 111122233344455555555 4566444443 257899999976642 2333333 44678
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881 165 CCTFSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 165 ~~~~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
.++++ ++.++++...|+..+||.+
T Consensus 324 ~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 324 SVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEEE-CCEEEEEEEECCEEEEEEE
Confidence 88888 7778889999998888743
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.37 E-value=3e-05 Score=61.12 Aligned_cols=72 Identities=8% Similarity=0.108 Sum_probs=57.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeCC
Q psy16881 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDML 190 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~~ 190 (222)
..+..++++++|+++++...++.|.+||.++++.+..+..+...+.+++|+++++.|+ +...++.|..|++.
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 4567899999999888887889999999887776666666667799999999999554 45556778888764
No 201
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.33 E-value=1.1e-05 Score=71.65 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=72.4
Q ss_pred cceEEEEEcCCCCeEE-----EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881 28 SNMRCVRFSPDTRLLA-----TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT 102 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~-----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (222)
..+..++|||||++|| .|+.+.+|++||+++++.+....
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~------------------------------------ 172 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL------------------------------------ 172 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE------------------------------------
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc------------------------------------
Confidence 3577889999999988 34444689999998765332110
Q ss_pred eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCC-------------cEEEEeCCCCc----eEEEecc-CCccEE
Q psy16881 103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK-------------TVKLWDVPSLT----CIKTLES-HTRYVT 164 (222)
Q Consensus 103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg-------------~I~iwd~~~~~----~~~~~~~-~~~~V~ 164 (222)
. ......++|+ +++.|+.++.+. .|++|++.+.. ++..... |...+.
T Consensus 173 ------------~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~ 237 (693)
T 3iuj_A 173 ------------K--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV 237 (693)
T ss_dssp ------------E--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE
T ss_pred ------------C--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE
Confidence 0 0001235688 888777777664 39999987653 3333333 445577
Q ss_pred EEEEcCCCCEEEEee----CCCeEEEEeC
Q psy16881 165 CCTFSCDDSLLASGS----NDKTVTIWDM 189 (222)
Q Consensus 165 ~~~~s~~~~~l~s~s----~D~~i~lwd~ 189 (222)
.+.++|+|++|+... .+..|.++|+
T Consensus 238 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 238 GATVTEDDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp EEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred EEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence 899999999886433 2248889986
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.29 E-value=6.9e-05 Score=60.17 Aligned_cols=111 Identities=6% Similarity=-0.016 Sum_probs=73.5
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
+.....+.+. ++++.++...+++|.+||..+++.+.+..
T Consensus 43 g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~---------------------------------------- 81 (328)
T 3dsm_A 43 GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT---------------------------------------- 81 (328)
T ss_dssp BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----------------------------------------
T ss_pred CccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----------------------------------------
Confidence 4456778774 45666777778999999988665443220
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-----ccEEEEEEcCCCCEEEEee--
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-----RYVTCCTFSCDDSLLASGS-- 179 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~V~~~~~s~~~~~l~s~s-- 179 (222)
.......++++++++.+++...++.|.+||..+++....+.... .....+++ ++..|+.+.
T Consensus 82 ----------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~ 149 (328)
T 3dsm_A 82 ----------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS 149 (328)
T ss_dssp ----------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT
T ss_pred ----------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC
Confidence 11234667887877544444388999999999988877665433 13456666 344455444
Q ss_pred CCCeEEEEeCC
Q psy16881 180 NDKTVTIWDML 190 (222)
Q Consensus 180 ~D~~i~lwd~~ 190 (222)
.++.|.++|+.
T Consensus 150 ~~~~v~viD~~ 160 (328)
T 3dsm_A 150 YQNRILKIDTE 160 (328)
T ss_dssp TCCEEEEEETT
T ss_pred CCCEEEEEECC
Confidence 48899999974
No 203
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.29 E-value=1.2e-05 Score=65.39 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCeEEEecCC-----CeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeee
Q psy16881 29 NMRCVRFSPDTRLLATGGDD-----ETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTR 103 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (222)
.+..++|+|||++|+.++.+ +.|++||+.++......
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-------------------------------------- 280 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-------------------------------------- 280 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE--------------------------------------
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee--------------------------------------
Confidence 57788999999988776554 45899987654321100
Q ss_pred eeeeccCCccccccCCCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEeCCCCceEEEeccCCc-----
Q psy16881 104 VGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGS----------------VDKTVKLWDVPSLTCIKTLESHTR----- 161 (222)
Q Consensus 104 ~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~sg~----------------~dg~I~iwd~~~~~~~~~~~~~~~----- 161 (222)
. .. ... +.|++ +|+.++.++ .++.|.+||+.+++.. .+..+..
T Consensus 281 --~----------~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~ 345 (396)
T 3c5m_A 281 --V----------MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVL 345 (396)
T ss_dssp --E----------CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCB
T ss_pred --e----------CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccc
Confidence 0 00 012 67888 888777654 3478999999876543 3333333
Q ss_pred ------cEEEEEEcCCCCEEEEeeC-CCeEEEEe
Q psy16881 162 ------YVTCCTFSCDDSLLASGSN-DKTVTIWD 188 (222)
Q Consensus 162 ------~V~~~~~s~~~~~l~s~s~-D~~i~lwd 188 (222)
.+..+.|+|+|+.|+.++. ++...+|-
T Consensus 346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred cccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 2456789999998887664 44444443
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.29 E-value=3.6e-05 Score=63.45 Aligned_cols=137 Identities=12% Similarity=0.045 Sum_probs=84.2
Q ss_pred EEEcCCCCeEEEec----------CCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881 33 VRFSPDTRLLATGG----------DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT 102 (222)
Q Consensus 33 l~~spdg~~l~tgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (222)
++++|||++|.+++ .++.|.+||..+.+...+..-..
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~--------------------------------- 129 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD--------------------------------- 129 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT---------------------------------
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC---------------------------------
Confidence 99999999887765 36789999998766554431000
Q ss_pred eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCc-cE------EEEEEcCCCC
Q psy16881 103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTR-YV------TCCTFSCDDS 173 (222)
Q Consensus 103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~-~V------~~~~~s~~~~ 173 (222)
+. +. ........+.++|+|++++.+.. ++.|.++|+.+++.+.++..... .+ .-++.+++|+
T Consensus 130 -----g~--r~--~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~ 200 (386)
T 3sjl_D 130 -----AP--RF--LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS 200 (386)
T ss_dssp -----CC--CC--CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSC
T ss_pred -----cc--cc--ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCC
Confidence 00 00 00011234789999998888864 68999999999998887753211 01 1135567777
Q ss_pred EEEEeeCC-CeE-----EEEeCC-------------CCeEEEeeCCCcEEEEeCCCC
Q psy16881 174 LLASGSND-KTV-----TIWDML-------------ATLLASGSNDKTVTIWDMRGN 211 (222)
Q Consensus 174 ~l~s~s~D-~~i-----~lwd~~-------------~~~l~s~~~d~~i~iwd~~~~ 211 (222)
+++....+ +++ .+++.. ...++-.+.++.+++.|+.+.
T Consensus 201 ~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 201 LAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 257 (386)
T ss_dssp EEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred EEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence 66666544 454 122211 112334556788999998754
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.27 E-value=0.00012 Score=57.70 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=65.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
...+.+++++|+|+++++. ++.|.+||.+++.........
T Consensus 53 ~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~-------------------------------------- 92 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD-------------------------------------- 92 (297)
T ss_dssp SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC--------------------------------------
T ss_pred CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC--------------------------------------
Confidence 4568888899998865543 567888887654322110000
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEeCCC-CceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD---------KTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDSLLA 176 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~d---------g~I~iwd~~~-~~~~~~~~~~~~~V~~~~~s~~~~~l~ 176 (222)
. ......++.+.++++|+++++.... ..-+||.+.. ++. ..+..+-.....++|+|+++.|+
T Consensus 93 ---~----~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 93 ---N----DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp ---T----TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEE
T ss_pred ---C----CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEE
Confidence 0 0012235678888888866654221 2345554432 332 22222233467889999998664
Q ss_pred -EeeCCCeEEEEeC
Q psy16881 177 -SGSNDKTVTIWDM 189 (222)
Q Consensus 177 -s~s~D~~i~lwd~ 189 (222)
+.+.++.|..||+
T Consensus 165 v~~~~~~~i~~~~~ 178 (297)
T 3g4e_A 165 YIDSLSYSVDAFDY 178 (297)
T ss_dssp EEEGGGTEEEEEEE
T ss_pred EecCCCCcEEEEec
Confidence 4556678888874
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.26 E-value=6.7e-05 Score=59.23 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=75.5
Q ss_pred cceEEEEEcCCCCeE-EEecCCCeEEEEeCC--CCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeee
Q psy16881 28 SNMRCVRFSPDTRLL-ATGGDDETVTVWRSD--DLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRV 104 (222)
Q Consensus 28 ~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (222)
...+.++|+||++.| ++.+.+++|.+|+++ ++...... ..
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~---------------------------------~~---- 191 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR---------------------------------SV---- 191 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE---------------------------------EE----
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE---------------------------------EE----
Confidence 345678999999866 555667899999863 22211000 00
Q ss_pred eeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc-CCCCEEEEeeC
Q psy16881 105 GVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS-CDDSLLASGSN 180 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~s~s~ 180 (222)
. .+..+......++++++|++.++....+.|.+||..+++.+..+..+...+++++|. |+++.|+.++.
T Consensus 192 ~-------~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 192 Y-------KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp E-------ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred E-------ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 0 000112345678899999988877778889999998899888888777789999998 88877766554
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.25 E-value=0.00045 Score=54.23 Aligned_cols=72 Identities=10% Similarity=0.133 Sum_probs=52.7
Q ss_pred CCEEEEEEc----CCCCEEEEE-eCCCcEEEEeCC-CCc-----eEEEeccCC-ccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881 119 SAVTSVRFN----HKSSLLVSG-SVDKTVKLWDVP-SLT-----CIKTLESHT-RYVTCCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 119 ~~i~~l~~~----~~~~~l~sg-~~dg~I~iwd~~-~~~-----~~~~~~~~~-~~V~~~~~s~~~~~l~s~s~D~~i~l 186 (222)
.....++++ ++++.++.+ ..++.|.+||.. +++ ....+..+. ..+..++++++|+++++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 446788899 988755544 567899999976 443 223344443 56788999999999888878889999
Q ss_pred EeCC
Q psy16881 187 WDML 190 (222)
Q Consensus 187 wd~~ 190 (222)
||..
T Consensus 252 ~d~~ 255 (314)
T 1pjx_A 252 FGPD 255 (314)
T ss_dssp ECTT
T ss_pred EcCC
Confidence 9874
No 208
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.25 E-value=6.6e-07 Score=73.47 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=74.0
Q ss_pred CCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceee-eeeeeeEeeeeeeeccCCccccc
Q psy16881 38 DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFS-TFVKQIIPTRVGVYGQDSETVGR 116 (222)
Q Consensus 38 dg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 116 (222)
++.+|++++.||.|+.||..+++............ .+..... ..... .....+..++.. .+.....+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s--------~p~~~~g-~~~v~~s~dg~l~a~d~~-tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQ--------VPTHVEE-PAFLPDPNDGSLYTLGSK-NNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCC--------CC------CCEEECTTTCCEEEC------CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCcee--------cceEcCC-CEEEEeCCCCEEEEEECC-CCceeeeeec
Confidence 57788999999999999999998887664311000 0100000 01111 111112211110 0111000100
Q ss_pred c------CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881 117 H------TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190 (222)
Q Consensus 117 h------~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~ 190 (222)
+ ..++ + ..+..+++++.|+.|..||.++++.+..+..+. ...++|++..|++++.|+.+..||..
T Consensus 78 ~~~~~~~~sp~----~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 78 TIPELVQASPC----R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp CHHHHHTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSS
T ss_pred cCccccccCce----E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC
Confidence 0 1111 1 134567888889999999999998877665543 23456688888899989999999863
Q ss_pred -------------------C-----CeEEEeeCCCcEEEEeCC-CCc
Q psy16881 191 -------------------A-----TLLASGSNDKTVTIWDMR-GNL 212 (222)
Q Consensus 191 -------------------~-----~~l~s~~~d~~i~iwd~~-~~~ 212 (222)
. ..++.++.|+.++.||.+ ++.
T Consensus 149 tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 149 TRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp SSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred CCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 1 356777889999999986 444
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.22 E-value=0.00063 Score=52.81 Aligned_cols=152 Identities=10% Similarity=0.011 Sum_probs=85.0
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee-eeeeEeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF-VKQIIPTRVGV 106 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 106 (222)
..+..++++++|++.++...++.|..|+.. +... .......... ... +....... ...... ...+...+..
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~-~~~---i~~~~~g~-l~v~~~~~~~i~~~~~~- 133 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSG-PYG---ITEGLNGD-IWFTQLNGDRIGKLTAD- 133 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCC-EEE---EEECSTTC-EEEEETTTTEEEEECTT-
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCC-Ccc---ceECCCCC-EEEEccCCCeEEEECCC-
Confidence 568889999999988887778999999887 4432 1111100000 000 00000111 111111 1111111100
Q ss_pred eccCC-ccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EeccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881 107 YGQDS-ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDDSLLASGSNDKTV 184 (222)
Q Consensus 107 ~~~~~-~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i 184 (222)
+... ..+......+..+.++++++.+++...++.|..+|. +++... ....+...+..++++++|++.++....+.|
T Consensus 134 -g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 211 (300)
T 2qc5_A 134 -GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKI 211 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEE
Confidence 0000 001112356788999999997776666788999998 454433 222334568899999999887777667778
Q ss_pred EEEeC
Q psy16881 185 TIWDM 189 (222)
Q Consensus 185 ~lwd~ 189 (222)
..||.
T Consensus 212 ~~~~~ 216 (300)
T 2qc5_A 212 GRITT 216 (300)
T ss_dssp EEECT
T ss_pred EEEcC
Confidence 88876
No 210
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.17 E-value=0.00027 Score=57.01 Aligned_cols=112 Identities=8% Similarity=0.046 Sum_probs=70.5
Q ss_pred cceEEEEEcCCCCeEEEecC-----CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881 28 SNMRCVRFSPDTRLLATGGD-----DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT 102 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (222)
..+..++|+++|+++++-.. +++|.+||+++++....+....
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~--------------------------------- 113 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP--------------------------------- 113 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT---------------------------------
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh---------------------------------
Confidence 56889999999987665433 5789999988766443321000
Q ss_pred eeeeeccCCccccccCCCEEEEEEcCCCCEE-EEEe---CCCcEEEEeCCCCceEEEeccCC------------------
Q psy16881 103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLL-VSGS---VDKTVKLWDVPSLTCIKTLESHT------------------ 160 (222)
Q Consensus 103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~sg~---~dg~I~iwd~~~~~~~~~~~~~~------------------ 160 (222)
....+...+..+++++++..+ ++.. .++.|.+||..+++....+.+|.
T Consensus 114 ----------~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~ 183 (343)
T 2qe8_A 114 ----------PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQI 183 (343)
T ss_dssp ----------TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBE
T ss_pred ----------hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEe
Confidence 000122334567787655444 4444 57788999988776555443321
Q ss_pred -----------ccEEEEEEcCCCCEEEEeeCCC
Q psy16881 161 -----------RYVTCCTFSCDDSLLASGSNDK 182 (222)
Q Consensus 161 -----------~~V~~~~~s~~~~~l~s~s~D~ 182 (222)
..+..++|+|+++.|+.+..++
T Consensus 184 ~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 184 GQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp ECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred ccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence 1257799999999888776554
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.16 E-value=0.00016 Score=57.26 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=70.9
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
...+..++++++|+++++...++.|.+|+.+ +....-.. .
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~---------------------------------------~ 124 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG---------------------------------------R 124 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC---------------------------------------E
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe---------------------------------------c
Confidence 5567889999999977776666888888764 32111000 0
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEE----EeC-------------CCcEEEEeCCCCceEEEeccCCccEEEEEEc
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVS----GSV-------------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFS 169 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~s----g~~-------------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s 169 (222)
.. ......+..+.++++|+++++ |.. .+.|..+|..+++..... .......++|+
T Consensus 125 ~~------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 125 YA------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp ET------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred cC------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 00 000122455778888887776 332 245777776555543222 23346789999
Q ss_pred CCCCEEEEeeCC------CeEEEEeC
Q psy16881 170 CDDSLLASGSND------KTVTIWDM 189 (222)
Q Consensus 170 ~~~~~l~s~s~D------~~i~lwd~ 189 (222)
|+++.|+.+... +.|.+||+
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~ 222 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAW 222 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEe
Confidence 999977776554 67888885
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.09 E-value=0.00065 Score=55.70 Aligned_cols=70 Identities=16% Similarity=0.011 Sum_probs=55.3
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEee-CCCeEEEEeC
Q psy16881 122 TSVRFNHKSSLLVSGSV----------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGS-NDKTVTIWDM 189 (222)
Q Consensus 122 ~~l~~~~~~~~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s-~D~~i~lwd~ 189 (222)
..+.++++++.++.+.. .+.|.++|+.+++.+..+.... ....+.|+++|+ +++++. .++.|.++|+
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 34778999887777643 3579999999999988886533 478999999999 787777 4899999998
Q ss_pred CCC
Q psy16881 190 LAT 192 (222)
Q Consensus 190 ~~~ 192 (222)
.+.
T Consensus 349 ~t~ 351 (373)
T 2mad_H 349 GAG 351 (373)
T ss_pred CCC
Confidence 653
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.07 E-value=0.00034 Score=57.41 Aligned_cols=68 Identities=15% Similarity=0.018 Sum_probs=53.1
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccC-------CccEEEEEEcCCCCEEEEeeC--CCe
Q psy16881 123 SVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESH-------TRYVTCCTFSCDDSLLASGSN--DKT 183 (222)
Q Consensus 123 ~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~-------~~~V~~~~~s~~~~~l~s~s~--D~~ 183 (222)
.+.++|++++++.+. .++.|.+||..+.+.+.++... ......+.|+|+|++|+++.. +..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 588999999888876 3678999999988877766432 123457899999999998874 478
Q ss_pred EEEEeCCC
Q psy16881 184 VTIWDMLA 191 (222)
Q Consensus 184 i~lwd~~~ 191 (222)
|.++| .+
T Consensus 150 v~viD-~t 156 (373)
T 2mad_H 150 VGLVV-QG 156 (373)
T ss_pred EEEEE-CC
Confidence 99999 64
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.04 E-value=0.00067 Score=56.28 Aligned_cols=152 Identities=11% Similarity=0.001 Sum_probs=83.3
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeee--eeEeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVK--QIIPTRVG 105 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 105 (222)
.....|+|+++|+++++...++.|+.||.+++......... .... +................ .+...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-------ia~~~~g~~l~~~d~~~~~~I~~~d~- 201 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-------PAVTKDKQRVYSIGWEGTHTVYVYMK- 201 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-------CEECTTSSEEEEEBSSTTCEEEEEEG-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-------eeEecCCCcEEEEecCCCceEEEEEc-
Confidence 34778999999998888888899999999876554332211 0000 00111111111111101 1111110
Q ss_pred eeccCC-ccc----cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE----eccCCccE-E-EEEEcCC-CC
Q psy16881 106 VYGQDS-ETV----GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT----LESHTRYV-T-CCTFSCD-DS 173 (222)
Q Consensus 106 ~~~~~~-~~~----~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~----~~~~~~~V-~-~~~~s~~-~~ 173 (222)
..... ..+ ......+.+++++|++..|+.+..++.|..||..++..... ..++.... . .++|+|+ +.
T Consensus 202 -~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 202 -ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp -GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred -CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 00000 011 11234567789999666666677788999999886653222 22222222 2 8999995 66
Q ss_pred EEEEeeCCCeEEEEeC
Q psy16881 174 LLASGSNDKTVTIWDM 189 (222)
Q Consensus 174 ~l~s~s~D~~i~lwd~ 189 (222)
++++-...+.|..|+.
T Consensus 281 lyv~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITP 296 (409)
T ss_dssp EEEEETTTTEEEEECT
T ss_pred EEEEeCCCCEEEEEec
Confidence 6666667788888875
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.99 E-value=0.00056 Score=60.95 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=46.4
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCC--ceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881 116 RHTSAVTSVRFNHKSSLLVSGSVD----KTVKLWDVPSL--TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188 (222)
Q Consensus 116 ~h~~~i~~l~~~~~~~~l~sg~~d----g~I~iwd~~~~--~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd 188 (222)
.+...+... +.++|+.|+..+.+ +.|.+||+.++ +....+..+...+..++++ ++.++++...|+..+||.
T Consensus 314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 344444444 34788877777653 44999998874 3333344445557777887 667788888898877774
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.98 E-value=0.0023 Score=51.15 Aligned_cols=156 Identities=8% Similarity=-0.043 Sum_probs=84.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccC-CCcceeeccceecCccCCcccceeeeeee-----eeE
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDR-GHTQGRIEGWGRVPACPLCRTRVFSTFVK-----QII 100 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 100 (222)
...+.+++++|+|+++++. . ..|.+||.+++......... ......+.. +....... ........ ...
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~---i~~d~~G~-l~v~~~~~~~~~~~~~ 162 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSND---GRMHPSGA-LWIGTMGRKAETGAGS 162 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEE---EEECTTSC-EEEEEEETTCCTTCEE
T ss_pred CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCC---EEECCCCC-EEEEeCCCcCCCCceE
Confidence 4568899999999987765 3 45899998776543221111 000011111 11111111 11111100 011
Q ss_pred eeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-c-----eEEEeccCCccEEEEEEcCC
Q psy16881 101 PTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSG-SVDKTVKLWDVP--SL-T-----CIKTLESHTRYVTCCTFSCD 171 (222)
Q Consensus 101 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg-~~dg~I~iwd~~--~~-~-----~~~~~~~~~~~V~~~~~s~~ 171 (222)
.+... ......+..+......++|+++++.++.+ +.++.|.+||+. ++ + .+..+......+..++++++
T Consensus 163 l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 163 IYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE 240 (326)
T ss_dssp EEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence 11111 11111111122346789999999866544 557889999975 45 2 22333333456788999999
Q ss_pred CCEEEEeeCCCeEEEEeCC
Q psy16881 172 DSLLASGSNDKTVTIWDML 190 (222)
Q Consensus 172 ~~~l~s~s~D~~i~lwd~~ 190 (222)
|++.++...++.|..||..
T Consensus 241 G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp SCEEEEEETTTEEEEECTT
T ss_pred CCEEEEEeCCCEEEEECCC
Confidence 9988877677889999874
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.95 E-value=0.0013 Score=52.61 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=46.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEc-CCCCEEEEeeCC
Q psy16881 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS-CDDSLLASGSND 181 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~s~s~D 181 (222)
...+.++++|+++++...++.|.+||. +++.+..+..+...+.+++|+ ++++.|+.++..
T Consensus 232 p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 232 MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 456888899987777766788999998 567777777777779999998 888777655433
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.89 E-value=0.00044 Score=57.78 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=83.8
Q ss_pred EEEEcCCCCeEEEec----------CCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEe
Q psy16881 32 CVRFSPDTRLLATGG----------DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIP 101 (222)
Q Consensus 32 ~l~~spdg~~l~tgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (222)
.++++|||++|+++. .++.|.++|..+.+.+.+..-.+. .
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~--~---------------------------- 171 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA--P---------------------------- 171 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--C----------------------------
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc--c----------------------------
Confidence 799999999888776 367899999887665544310000 0
Q ss_pred eeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCc-c------EEEEEEcCCC
Q psy16881 102 TRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTR-Y------VTCCTFSCDD 172 (222)
Q Consensus 102 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~-~------V~~~~~s~~~ 172 (222)
+.. .......+.++|+|++++.+.. ++.|.+.|+.+++.+.++..... . -..+.++++|
T Consensus 172 ----------r~~--~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 172 ----------RFL--VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp ----------CCC--BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred ----------ccc--cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence 000 0001123678999998888874 57899999999988877754221 0 1124566777
Q ss_pred CEEEEeeCCCeEE-----EEeCC-------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 173 SLLASGSNDKTVT-----IWDML-------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 173 ~~l~s~s~D~~i~-----lwd~~-------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
++++....++++. ++++. ...++..+..+.+.+.|+.+
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~ 295 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTA 295 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECS
T ss_pred CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccC
Confidence 7666555555544 23321 22334445567788888753
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.85 E-value=0.00086 Score=59.47 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=20.8
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEE
Q psy16881 132 LLVSGSVDKTVKLWDVPSLTCIKT 155 (222)
Q Consensus 132 ~l~sg~~dg~I~iwd~~~~~~~~~ 155 (222)
.++.++.+|.+.++|.++++.+..
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEecc
Confidence 688899999999999999988743
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.81 E-value=0.00089 Score=59.25 Aligned_cols=85 Identities=11% Similarity=0.189 Sum_probs=62.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEeccCC-----------ccE------------------------EEEEEcCCCCEE
Q psy16881 131 SLLVSGSVDKTVKLWDVPSLTCIKTLESHT-----------RYV------------------------TCCTFSCDDSLL 175 (222)
Q Consensus 131 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----------~~V------------------------~~~~~s~~~~~l 175 (222)
+.++.++.+|.|.++|.++++.+..+.... ..+ ..++++|+..++
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 578899999999999999998876554211 111 146788988888
Q ss_pred EEeeCC-------------------------------------------CeEEEEeCC----------------------
Q psy16881 176 ASGSND-------------------------------------------KTVTIWDML---------------------- 190 (222)
Q Consensus 176 ~s~s~D-------------------------------------------~~i~lwd~~---------------------- 190 (222)
++...+ +.|..||+.
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~ 487 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA 487 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence 875432 678889874
Q ss_pred CCeEEEeeCCCcEEEEeCC-CCcccc
Q psy16881 191 ATLLASGSNDKTVTIWDMR-GNLSVD 215 (222)
Q Consensus 191 ~~~l~s~~~d~~i~iwd~~-~~~~~~ 215 (222)
..+++.++.|+.+++||++ ++....
T Consensus 488 g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 488 GNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCceeee
Confidence 2467778899999999997 665543
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.79 E-value=0.00064 Score=56.82 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=64.3
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccC-------CccEEEEEEcCCCCEEEEeeC--CCe
Q psy16881 123 SVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESH-------TRYVTCCTFSCDDSLLASGSN--DKT 183 (222)
Q Consensus 123 ~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~-------~~~V~~~~~s~~~~~l~s~s~--D~~ 183 (222)
.+.++|+++.++.+. .++.|.++|..+++.+.++... ......+.|+|+|++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 588999999877775 3678999999999988776432 112346789999999998764 578
Q ss_pred EEEEeCCCC--------------------eEEEeeCCCcEEEEeCC
Q psy16881 184 VTIWDMLAT--------------------LLASGSNDKTVTIWDMR 209 (222)
Q Consensus 184 i~lwd~~~~--------------------~l~s~~~d~~i~iwd~~ 209 (222)
|.+.|+.+. .+++.+.|+++.+.++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC
Confidence 999998532 23455667777777774
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.78 E-value=0.0037 Score=51.75 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=47.9
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEeccCC---------------ccEEEEEEcCCCCEEEEee-CCCeEE
Q psy16881 123 SVRFNHK-SSLLVSGSVDKTVKLWDVPSLTCIKTLESHT---------------RYVTCCTFSCDDSLLASGS-NDKTVT 185 (222)
Q Consensus 123 ~l~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~---------------~~V~~~~~s~~~~~l~s~s-~D~~i~ 185 (222)
.++|+|+ +.++++-..++.|+.||.... +..+.++. .....++++++|+++++-+ .+..|+
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 8999996 455666667788999987643 33333322 3478899999999888877 888999
Q ss_pred EEeC
Q psy16881 186 IWDM 189 (222)
Q Consensus 186 lwd~ 189 (222)
.||+
T Consensus 349 ~~~~ 352 (409)
T 3hrp_A 349 KLDI 352 (409)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9995
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.60 E-value=0.0018 Score=51.09 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=42.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 122 TSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 122 ~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
..+.++++|++.++ ..+ .|.+||. +++.+..+..+. .+..++|+++++.|..++.++..+
T Consensus 242 dgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 242 DGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 34678889985444 444 4899997 567776666554 478899999998888877765433
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.58 E-value=0.0025 Score=51.22 Aligned_cols=74 Identities=8% Similarity=0.099 Sum_probs=52.7
Q ss_pred cCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceEEEeccC------CccEEEEEEcCCCCEE-EEee---CC
Q psy16881 117 HTSAVTSVRFNHKSSLLVSGSV-----DKTVKLWDVPSLTCIKTLESH------TRYVTCCTFSCDDSLL-ASGS---ND 181 (222)
Q Consensus 117 h~~~i~~l~~~~~~~~l~sg~~-----dg~I~iwd~~~~~~~~~~~~~------~~~V~~~~~s~~~~~l-~s~s---~D 181 (222)
|...+..++++++++.+++-.. ++.|.+||+++++.+..+..+ ...+..+++++++..+ ++-+ .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4567889999999876555433 578999999988876665432 2345789999865444 5554 67
Q ss_pred CeEEEEeCC
Q psy16881 182 KTVTIWDML 190 (222)
Q Consensus 182 ~~i~lwd~~ 190 (222)
+.|.+||+.
T Consensus 145 ~~i~v~d~~ 153 (343)
T 2qe8_A 145 AALIRVDLQ 153 (343)
T ss_dssp CEEEEEETT
T ss_pred CeEEEEECC
Confidence 899999974
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.54 E-value=0.0028 Score=49.24 Aligned_cols=151 Identities=10% Similarity=0.065 Sum_probs=77.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCC--eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDE--TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPT 102 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 102 (222)
.+..+-|.|+ ++.+..+++.+| +|+.+|+++++............+ .+.. . . ....+... ...+...
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fg--eGit---~--~-g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFG--EGIS---D--W-KDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCE--EEEE---E--E-TTEEEEEESSSSEEEEE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccce--eEEE---E--e-CCEEEEEEeeCCEEEEE
Confidence 3455889998 777777888876 999999999887765532110000 0000 0 0 00111000 0000000
Q ss_pred eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC--C---ccEEEEEEcCCCCEEEE
Q psy16881 103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH--T---RYVTCCTFSCDDSLLAS 177 (222)
Q Consensus 103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~---~~V~~~~~s~~~~~l~s 177 (222)
+ ......+..-...-....+.++++.++....++.|.++|..+++.+..+... . ..++.+.+. +|.+.+.
T Consensus 113 D----~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 113 N----IRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp E----TTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred E----CccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 0 0111111111111122344566777888777777888888888777665432 1 223456665 5654444
Q ss_pred eeCCCeEEEEeCCC
Q psy16881 178 GSNDKTVTIWDMLA 191 (222)
Q Consensus 178 ~s~D~~i~lwd~~~ 191 (222)
...+..|.+.|..+
T Consensus 188 ~w~~~~I~vIDp~t 201 (262)
T 3nol_A 188 VWQTNKIVRIDPET 201 (262)
T ss_dssp ETTSSEEEEECTTT
T ss_pred EccCCeEEEEECCC
Confidence 44566777777643
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.46 E-value=0.0011 Score=54.20 Aligned_cols=88 Identities=14% Similarity=0.005 Sum_probs=64.6
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEeccC--C-----ccEEEEEEcCCCCEEEEeeC--CCe
Q psy16881 123 SVRFNHKSSLLVSGS----------VDKTVKLWDVPSLTCIKTLESH--T-----RYVTCCTFSCDDSLLASGSN--DKT 183 (222)
Q Consensus 123 ~l~~~~~~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~--~-----~~V~~~~~s~~~~~l~s~s~--D~~ 183 (222)
.+.++|++++++.+. .++.|.+||+.+++.+.++..+ . .....+.++|+|++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 588999999888876 3688999999999998887543 1 22456899999999998764 457
Q ss_pred EEE--EeCCC-----------------CeEEEeeCCCcEEEEeCCC
Q psy16881 184 VTI--WDMLA-----------------TLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 184 i~l--wd~~~-----------------~~l~s~~~d~~i~iwd~~~ 210 (222)
+.+ +|+.+ ..+++.+.|+++.+.|+..
T Consensus 149 v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred EEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 888 88732 1234445677777777764
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.45 E-value=0.0077 Score=46.97 Aligned_cols=150 Identities=8% Similarity=0.026 Sum_probs=78.9
Q ss_pred ceEEEEEcCCCCeEEEecC--CCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eeeeEeeee
Q psy16881 29 NMRCVRFSPDTRLLATGGD--DETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQIIPTRV 104 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 104 (222)
..+-++|+|++.+.++.+. +++|+++|+.+++.+........... .+.... ....+... ...+...+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg--eGi~~~------g~~lyv~t~~~~~v~viD- 92 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG--EGLTLL------NEKLYQVVWLKNIGFIYD- 92 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE--EEEEEE------TTEEEEEETTCSEEEEEE-
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce--EEEEEe------CCEEEEEEecCCEEEEEE-
Confidence 3678999999866666554 68999999999887766431111000 000000 00111110 00111111
Q ss_pred eeeccCCccccccCCC-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC--c---cEEEEEEcCCCCEEEEe
Q psy16881 105 GVYGQDSETVGRHTSA-VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT--R---YVTCCTFSCDDSLLASG 178 (222)
Q Consensus 105 ~~~~~~~~~~~~h~~~-i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~--~---~V~~~~~s~~~~~l~s~ 178 (222)
......+..-... -....++++++.++.+..++.|.++|..+.+.+..+.... . .++.+.|. ++...+..
T Consensus 93 ---~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~ 168 (266)
T 2iwa_A 93 ---RRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI 168 (266)
T ss_dssp ---TTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred ---CCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence 0011111111111 1223566777888888877888888888888776665321 1 24566666 56444444
Q ss_pred eCCCeEEEEeCCC
Q psy16881 179 SNDKTVTIWDMLA 191 (222)
Q Consensus 179 s~D~~i~lwd~~~ 191 (222)
..+..|.+.|..+
T Consensus 169 ~~~~~V~vID~~t 181 (266)
T 2iwa_A 169 WQTDCIARISAKD 181 (266)
T ss_dssp TTSSEEEEEETTT
T ss_pred CCCCeEEEEECCC
Confidence 4567788888754
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.42 E-value=0.0095 Score=52.68 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=44.8
Q ss_pred cccCCCEEEEEEcCCCCEE-EEEeCC---CcEEEEeCCCCce--EEEeccCCccEEEEEEcCCCCEEEEeeC-CC--eEE
Q psy16881 115 GRHTSAVTSVRFNHKSSLL-VSGSVD---KTVKLWDVPSLTC--IKTLESHTRYVTCCTFSCDDSLLASGSN-DK--TVT 185 (222)
Q Consensus 115 ~~h~~~i~~l~~~~~~~~l-~sg~~d---g~I~iwd~~~~~~--~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D~--~i~ 185 (222)
..+....... ++++++.| +....+ +.|..+|+.++.. ...+..|...+. .|+++++.|+.... ++ .|.
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 3344444444 55666644 444433 5688899887543 345556665554 88888888776554 43 688
Q ss_pred EEeCC
Q psy16881 186 IWDML 190 (222)
Q Consensus 186 lwd~~ 190 (222)
+||+.
T Consensus 354 ~~d~~ 358 (693)
T 3iuj_A 354 QFDYE 358 (693)
T ss_dssp EECTT
T ss_pred EEECC
Confidence 88863
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.38 E-value=0.0001 Score=60.28 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=51.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------
Q psy16881 129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------------ 190 (222)
Q Consensus 129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------ 190 (222)
++..+++++.||.|..||..+++.+.++.. ..+.+..+..++.++++++.|+.+..||..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 367788888889999999888888776655 334344444567677777888888888862
Q ss_pred ------CCeEEEeeCCCcEEEEeCC-CCcc
Q psy16881 191 ------ATLLASGSNDKTVTIWDMR-GNLS 213 (222)
Q Consensus 191 ------~~~l~s~~~d~~i~iwd~~-~~~~ 213 (222)
...+++++.|+.++.||.+ ++..
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~ 115 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQ 115 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC-----
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEE
Confidence 1235556677888888886 5443
No 230
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.30 E-value=0.022 Score=43.77 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=74.3
Q ss_pred eee-ccceEEEEEcCCCCeEEEecCCC--eEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeee--eee
Q psy16881 24 VHI-GSNMRCVRFSPDTRLLATGGDDE--TVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTF--VKQ 98 (222)
Q Consensus 24 ~~~-~~~v~~l~~spdg~~l~tgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (222)
||- .+...-|.|++ +.+..+++.+| +|+.+|+++++............+ -+ +.. .....+... ...
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg----eG-i~~---~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG----AG-IVA---WRDRLIQLTWRNHE 86 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE----EE-EEE---ETTEEEEEESSSSE
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce----eE-EEE---eCCEEEEEEeeCCE
Confidence 443 46678899986 66777777754 999999999887765422111000 00 000 000011000 000
Q ss_pred eEeeeeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCC-----ccEEEEEEcCCCC
Q psy16881 99 IIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-----RYVTCCTFSCDDS 173 (222)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~V~~~~~s~~~~ 173 (222)
+...+ ......+......-....+.++++.++....++.|.++|..+++.+..+.... ..++.+.+. +|.
T Consensus 87 v~v~D----~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 87 GFVYD----LATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEE----TTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEE----CCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 00000 00111111111222233445666777777777777777777777666554321 123445544 444
Q ss_pred EEEEeeCCCeEEEEeCC
Q psy16881 174 LLASGSNDKTVTIWDML 190 (222)
Q Consensus 174 ~l~s~s~D~~i~lwd~~ 190 (222)
+.+....+..|.+.|..
T Consensus 162 lyanvw~s~~I~vIDp~ 178 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPA 178 (243)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEEECCCCeEEEEECC
Confidence 44333345566666664
No 231
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.18 E-value=0.0095 Score=46.36 Aligned_cols=38 Identities=8% Similarity=0.136 Sum_probs=29.8
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET 65 (222)
Q Consensus 27 ~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~ 65 (222)
.+..+.|.|+ ++.+..+.+.+|+|+.+|+++++.....
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~ 91 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME 91 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE
Confidence 4555788887 4677788899999999999988766544
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.17 E-value=0.042 Score=44.27 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=51.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC------------------
Q psy16881 130 SSLLVSGSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDKTVTIWDML------------------ 190 (222)
Q Consensus 130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~------------------ 190 (222)
+..++.++.++.|..+|.++++.+..... ....+..... .+..|+.++.+|.+..+|..
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~ 354 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTE 354 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeC
Confidence 56788888899999999999988766542 1222222222 25678888889999999864
Q ss_pred ----CCeEEEeeCCCcEEEEe
Q psy16881 191 ----ATLLASGSNDKTVTIWD 207 (222)
Q Consensus 191 ----~~~l~s~~~d~~i~iwd 207 (222)
...++.++.++.|..||
T Consensus 355 ~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 355 PVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CEEETTEEEEEBTTSCEEEEE
T ss_pred CEEECCEEEEEeCCCEEEEEe
Confidence 12455666677777665
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.15 E-value=0.017 Score=50.95 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEE
Q psy16881 132 LLVSGSVDKTVKLWDVPSLTCIKT 155 (222)
Q Consensus 132 ~l~sg~~dg~I~iwd~~~~~~~~~ 155 (222)
.++.++.+|.+.++|.++++.+..
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEecc
Confidence 688888999999999999887743
No 234
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.08 E-value=0.05 Score=42.06 Aligned_cols=146 Identities=12% Similarity=0.176 Sum_probs=86.1
Q ss_pred eeeccceEEEEEcCCCCeE-EEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEee
Q psy16881 24 VHIGSNMRCVRFSPDTRLL-ATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPT 102 (222)
Q Consensus 24 ~~~~~~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (222)
+.+...++.++|.|+++.| ++...++.|...|.. +........
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----------------------------------- 66 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----------------------------------- 66 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-----------------------------------
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-----------------------------------
Confidence 3445679999999987655 456667777777765 333222100
Q ss_pred eeeeeccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEec------cCCccEEEEEEcCCCC
Q psy16881 103 RVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT---CIKTLE------SHTRYVTCCTFSCDDS 173 (222)
Q Consensus 103 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~---~~~~~~------~~~~~V~~~~~s~~~~ 173 (222)
.+ ......|++.+++.++++.-.++.+.++++.... .+.... ..+.....+++++.++
T Consensus 67 ------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~ 133 (255)
T 3qqz_A 67 ------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH 133 (255)
T ss_dssp ------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT
T ss_pred ------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC
Confidence 00 1235567777666665554455667777664332 122221 1233468899999988
Q ss_pred EEEEeeCCCeEEEEeCC----------------------------------CCeEEEeeCCCcEEEEeCCCCccccCCC
Q psy16881 174 LLASGSNDKTVTIWDML----------------------------------ATLLASGSNDKTVTIWDMRGNLSVDVPL 218 (222)
Q Consensus 174 ~l~s~s~D~~i~lwd~~----------------------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 218 (222)
.|.++.+.....+|.+. ..+++.+.+++.+-.+|.++...-..++
T Consensus 134 ~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L 212 (255)
T 3qqz_A 134 TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSL 212 (255)
T ss_dssp EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEEC
T ss_pred EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEc
Confidence 77777765443333321 2356666777888888888775443333
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.08 E-value=0.036 Score=46.43 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=43.7
Q ss_pred CEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC---CceEEEeccC-C---------c----cEEEEEEcCCCCEEEEee
Q psy16881 120 AVTSVRFNHKSSLLVSGSV-DKTVKLWDVPS---LTCIKTLESH-T---------R----YVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~-dg~I~iwd~~~---~~~~~~~~~~-~---------~----~V~~~~~s~~~~~l~s~s 179 (222)
....|.++++|++|+.+.. .+.|.++|+.+ .+.+..+... . . ....+.++|+|++|+++.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4567889999998887765 67899999853 3445444322 0 1 246789999999999887
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.06 E-value=0.0099 Score=46.75 Aligned_cols=47 Identities=19% Similarity=0.025 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881 140 KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188 (222)
Q Consensus 140 g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd 188 (222)
+.|..+| .+++.+.........+.++..+++|.+. .++.++.+..+|
T Consensus 195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~ 241 (330)
T 3hxj_A 195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAIN 241 (330)
T ss_dssp SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEEC
T ss_pred CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEEC
Confidence 4555555 4444444433333334455555544333 233344444444
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.03 E-value=0.007 Score=53.51 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=38.8
Q ss_pred CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881 140 KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190 (222)
Q Consensus 140 g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~ 190 (222)
|.|..||+++++.+-++... ..+....+...+.+++.++.|+.+++||..
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 78999999999987766533 233344566678889999999999999985
No 238
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.01 E-value=0.0028 Score=56.69 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=41.8
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEeCCCCce--EEEec-cCCccEEEEEEcCCCCEEEEeeC---CCeEEEEeCC
Q psy16881 123 SVRFNHKSSLLVSGSVD-----KTVKLWDVPSLTC--IKTLE-SHTRYVTCCTFSCDDSLLASGSN---DKTVTIWDML 190 (222)
Q Consensus 123 ~l~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~--~~~~~-~~~~~V~~~~~s~~~~~l~s~s~---D~~i~lwd~~ 190 (222)
.+.|+|+++.|+....+ ..|.++++.+.+. ...+. .+......+.|||+|++|+..+. ...|.++|+.
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 36688888766655554 2577788876531 12222 22345667899999998886552 2356666653
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.97 E-value=0.041 Score=44.34 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881 38 DTRLLATGGDDETVTVWRSDDLSLIMET 65 (222)
Q Consensus 38 dg~~l~tgs~Dg~i~iwd~~~~~~~~~~ 65 (222)
++..|++++.++.|..+|.++++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~ 79 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSV 79 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeee
Confidence 3566777788999999999888776654
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.97 E-value=0.03 Score=46.92 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=44.2
Q ss_pred EEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCceEEEeccCC--ccEEEEEE--cCCCCEEEEee
Q psy16881 123 SVRFNHKSSLLVSGS-------------------VDKTVKLWDVPSLTCIKTLESHT--RYVTCCTF--SCDDSLLASGS 179 (222)
Q Consensus 123 ~l~~~~~~~~l~sg~-------------------~dg~I~iwd~~~~~~~~~~~~~~--~~V~~~~~--s~~~~~l~s~s 179 (222)
.+.|+|+++.+++.. ....|.+||+.+++.+.++.... .....+.| +|+++++++++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 367889999888875 36899999999888887776531 23445655 99999999887
Q ss_pred C
Q psy16881 180 N 180 (222)
Q Consensus 180 ~ 180 (222)
+
T Consensus 272 e 272 (462)
T 2ece_A 272 V 272 (462)
T ss_dssp E
T ss_pred e
Confidence 5
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.82 E-value=0.0022 Score=55.44 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=75.7
Q ss_pred cceEEEEEcCCCCeEE-EecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLA-TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
....++.++|||++++ ++..+++|.++|+.+...... +.... . ..+. .
T Consensus 277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~----~~l~~--------------~--------~~v~----~- 325 (595)
T 1fwx_A 277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY----ENADP--------------R--------SAVV----A- 325 (595)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH----SCCCG--------------G--------GGEE----E-
T ss_pred CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccc----cccCc--------------c--------cceE----E-
Confidence 3456689999999765 555699999999874321100 00000 0 0000 0
Q ss_pred eccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CceEEEeccCCccEE-----EEEEcCC
Q psy16881 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS----------LTCIKTLESHTRYVT-----CCTFSCD 171 (222)
Q Consensus 107 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~----------~~~~~~~~~~~~~V~-----~~~~s~~ 171 (222)
.+. -......++|+++|+...+.-.|+.|.+||+.+ .+.+.++..|..+-. .++++++
T Consensus 326 ------~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D 398 (595)
T 1fwx_A 326 ------EPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT 398 (595)
T ss_dssp ------CCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred ------EcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC
Confidence 000 123356789999994444556689999999876 556777776655421 2345799
Q ss_pred CCEEEEee---CCCeE----------EEEeCC
Q psy16881 172 DSLLASGS---NDKTV----------TIWDML 190 (222)
Q Consensus 172 ~~~l~s~s---~D~~i----------~lwd~~ 190 (222)
|++|+++. .|+.+ .++|+.
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS 430 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEEcC
Confidence 99999864 45532 678874
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.81 E-value=0.004 Score=55.18 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=37.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCcc-EEEEEEcCCCCEEE
Q psy16881 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLA 176 (222)
Q Consensus 126 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~~~~~l~ 176 (222)
+...+..++.|+.||.|+.||.++++.+.++...... ..-++|..+|++.+
T Consensus 482 ~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 482 LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 4456789999999999999999999999887654322 12356667776444
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.37 E-value=0.088 Score=41.16 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=57.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCC-----------
Q psy16881 122 TSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML----------- 190 (222)
Q Consensus 122 ~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~----------- 190 (222)
.++...++++ ++.++.++.|..+|.. ++.+..+......+.++..+.++.+.+.. +.+..+|..
T Consensus 140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~ 214 (330)
T 3hxj_A 140 ATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAGY 214 (330)
T ss_dssp SCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEECCSS
T ss_pred eeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccCC
Confidence 3445555666 6667788999999988 77766665555556677777777765544 567777632
Q ss_pred ----------CCeEEEeeCCCcEEEEeCCCCc
Q psy16881 191 ----------ATLLASGSNDKTVTIWDMRGNL 212 (222)
Q Consensus 191 ----------~~~l~s~~~d~~i~iwd~~~~~ 212 (222)
...+..++.++.+..+|..++.
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~ 246 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINPDGTE 246 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECTTSCE
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECCCCCE
Confidence 1246667777888888866544
No 244
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.36 E-value=0.32 Score=42.15 Aligned_cols=26 Identities=4% Similarity=-0.104 Sum_probs=21.0
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEec
Q psy16881 132 LLVSGSVDKTVKLWDVPSLTCIKTLE 157 (222)
Q Consensus 132 ~l~sg~~dg~I~iwd~~~~~~~~~~~ 157 (222)
.++.++.+|.+.++|.++++.+..+.
T Consensus 338 ~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 338 ATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCceEEEEECCCCCEecccc
Confidence 67888889999999998888776543
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.29 E-value=0.25 Score=37.67 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=59.4
Q ss_pred CCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEE-eeCCCeEEEEeCCC--
Q psy16881 119 SAVTSVRFNHKSSLLVSGSV---DKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLAS-GSNDKTVTIWDMLA-- 191 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~~---dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s-~s~D~~i~lwd~~~-- 191 (222)
.....+++++++..++.+.. .+.|..+++... ....+ ...-.....+++++++..|+. -...+.|..+|+.+
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 34678999997666655554 367888877532 22222 122345788999998766654 44557898888741
Q ss_pred ------------------CeEEEee-CCCcEEEEeCC-CCccccC
Q psy16881 192 ------------------TLLASGS-NDKTVTIWDMR-GNLSVDV 216 (222)
Q Consensus 192 ------------------~~l~s~~-~d~~i~iwd~~-~~~~~~~ 216 (222)
..+..+. .++.|..+|.. ++....+
T Consensus 201 ~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 201 RRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 2233333 45678888886 4444333
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.28 E-value=0.14 Score=39.73 Aligned_cols=148 Identities=7% Similarity=-0.008 Sum_probs=83.3
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCC
Q psy16881 32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDS 111 (222)
Q Consensus 32 ~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (222)
.+++. .+++.++.-.++++.++|..+.+.+.++... .. .+|+..+. ......+.....+...+... ....
T Consensus 70 Gi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~----~g~glt~D---g~~l~vs~gs~~l~viD~~t-~~v~ 139 (266)
T 2iwa_A 70 GLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK----DGWGLATD---GKILYGSDGTSILYEIDPHT-FKLI 139 (266)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS----SCCEEEEC---SSSEEEECSSSEEEEECTTT-CCEE
T ss_pred EEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC----CeEEEEEC---CCEEEEECCCCeEEEEECCC-CcEE
Confidence 46676 5688888889999999999999988887533 00 12221111 11111111111222111100 0000
Q ss_pred c--cccc---cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC-------------CccEEEEEEcCCCC
Q psy16881 112 E--TVGR---HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH-------------TRYVTCCTFSCDDS 173 (222)
Q Consensus 112 ~--~~~~---h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-------------~~~V~~~~~s~~~~ 173 (222)
. .+.. .-..++.+.|. ++..++....++.|.+.|..+++.+..+... ......++|+++++
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~ 218 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK 218 (266)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred EEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence 0 0110 11235667776 5644444445789999999999988877531 12457899999987
Q ss_pred EEEE-eeCCCeEEEEeCC
Q psy16881 174 LLAS-GSNDKTVTIWDML 190 (222)
Q Consensus 174 ~l~s-~s~D~~i~lwd~~ 190 (222)
.++. +....++.+.++.
T Consensus 219 ~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 219 RIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEEETTCSEEEEEEEE
T ss_pred EEEEECCCCCeEEEEEEe
Confidence 6554 5456677777763
No 247
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.20 E-value=0.026 Score=46.09 Aligned_cols=69 Identities=9% Similarity=-0.021 Sum_probs=52.0
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCC-EEEEee-CCCeEEEEeCCCC
Q psy16881 124 VRFNHKSSLLVSGSV---------DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGS-NDKTVTIWDMLAT 192 (222)
Q Consensus 124 l~~~~~~~~l~sg~~---------dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~s~s-~D~~i~lwd~~~~ 192 (222)
+.++++++.++.+.. ++.+.++|+.+++.+..+.... ....+.|+++|+ ++++.. .++.|.++|+.+.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 678999987776533 2355699999999888776543 577899999997 555666 5899999998754
Q ss_pred e
Q psy16881 193 L 193 (222)
Q Consensus 193 ~ 193 (222)
.
T Consensus 348 k 348 (368)
T 1mda_H 348 Q 348 (368)
T ss_dssp E
T ss_pred c
Confidence 4
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.15 E-value=0.44 Score=41.14 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=20.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEec
Q psy16881 132 LLVSGSVDKTVKLWDVPSLTCIKTLE 157 (222)
Q Consensus 132 ~l~sg~~dg~I~iwd~~~~~~~~~~~ 157 (222)
.++.++.+|.+.+.|..+++.+....
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeec
Confidence 56778888899999998888776543
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.05 E-value=0.39 Score=37.72 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=36.5
Q ss_pred EEEEEcCCCCEEEEE-eCCCcEEEEeCCCCc--eEEEeccCCccEEEEEEcCCCCEEEEeeC
Q psy16881 122 TSVRFNHKSSLLVSG-SVDKTVKLWDVPSLT--CIKTLESHTRYVTCCTFSCDDSLLASGSN 180 (222)
Q Consensus 122 ~~l~~~~~~~~l~sg-~~dg~I~iwd~~~~~--~~~~~~~~~~~V~~~~~s~~~~~l~s~s~ 180 (222)
..++++++++.++.+ ...+.|.++++.... ....+..... ...++++++|++.++...
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 458899999866555 556789999886421 1111111112 667889999987766543
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.81 E-value=0.081 Score=45.84 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCc------------eEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881 121 VTSVRFNHKSSLLVSG-SVDKTVKLWDVPSLT------------CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg-~~dg~I~iwd~~~~~------------~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw 187 (222)
..++.++|+|++++.+ ..+++|.++|+.+.+ .+.++.... ...-++|+++|....+.--|.+|.+|
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-GPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-CEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-CcceEEECCCCeEEEEEecCCcEEEE
Confidence 4568899999965555 468899999998653 344444433 36789999999444456688999999
Q ss_pred eC
Q psy16881 188 DM 189 (222)
Q Consensus 188 d~ 189 (222)
|+
T Consensus 358 di 359 (595)
T 1fwx_A 358 NI 359 (595)
T ss_dssp EH
T ss_pred Eh
Confidence 96
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.70 E-value=0.95 Score=39.37 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=20.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEe
Q psy16881 131 SLLVSGSVDKTVKLWDVPSLTCIKTL 156 (222)
Q Consensus 131 ~~l~sg~~dg~I~iwd~~~~~~~~~~ 156 (222)
+.++.++.+|.+.+.|.++++.+...
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeecc
Confidence 45777888899999998888877554
No 252
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.63 E-value=0.35 Score=40.22 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=50.0
Q ss_pred cCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC-Cc-eE--------EEeccCCccEEEEEEcCCCCEEEEee--CC
Q psy16881 117 HTSAVTSVRFNHKS---SLLVSGSVDKTVKLWDVPS-LT-CI--------KTLESHTRYVTCCTFSCDDSLLASGS--ND 181 (222)
Q Consensus 117 h~~~i~~l~~~~~~---~~l~sg~~dg~I~iwd~~~-~~-~~--------~~~~~~~~~V~~~~~s~~~~~l~s~s--~D 181 (222)
...+|..+.|||.+ ..+++-..|+.||+||+.. .. .. .........|.+++|..++-.|+..+ ..
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~ 202 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEG 202 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTS
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCC
Confidence 36789999999875 4899999999999999974 21 11 11122335688999998877777655 66
Q ss_pred CeEEEE
Q psy16881 182 KTVTIW 187 (222)
Q Consensus 182 ~~i~lw 187 (222)
|.|.-.
T Consensus 203 GDIYAl 208 (452)
T 3pbp_A 203 GDIFAF 208 (452)
T ss_dssp CEEEEE
T ss_pred CCEEEE
Confidence 766543
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.61 E-value=0.31 Score=37.86 Aligned_cols=87 Identities=10% Similarity=0.128 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCc-cEEEEEEcCCCCEEEEeeCCCeEEEEeCC---------
Q psy16881 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTR-YVTCCTFSCDDSLLASGSNDKTVTIWDML--------- 190 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-~V~~~~~s~~~~~l~s~s~D~~i~lwd~~--------- 190 (222)
...+.|+. +..+.+.+.+|.|+++|+++++.+.++ .... .-..+++.. +++.+....++.+.+||..
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 35677763 567777788889999999999888776 3333 223466553 3444455578899999974
Q ss_pred -----------CCeEEEeeCCCcEEEEeCCC
Q psy16881 191 -----------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 -----------~~~l~s~~~d~~i~iwd~~~ 210 (222)
...|+.+..+++|+++|..+
T Consensus 134 ~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T 164 (268)
T 3nok_A 134 YSGEGWGLCYWNGKLVRSDGGTMLTFHEPDG 164 (268)
T ss_dssp CSSCCCCEEEETTEEEEECSSSEEEEECTTT
T ss_pred CCCceeEEecCCCEEEEECCCCEEEEEcCCC
Confidence 23455555578899999874
No 254
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.60 E-value=0.7 Score=38.29 Aligned_cols=70 Identities=9% Similarity=0.002 Sum_probs=46.6
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEec-cCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeCC
Q psy16881 121 VTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDML 190 (222)
Q Consensus 121 i~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~~ 190 (222)
...++++| ++.++++-..++.|..+|........... +.......++|+|++++|+ +-.....|..++..
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 45677899 56666666667889999987655422221 1223467899999999544 45566788887753
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.42 E-value=0.29 Score=37.85 Aligned_cols=87 Identities=10% Similarity=0.145 Sum_probs=59.0
Q ss_pred EEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEeccCCcc-EEEEEEcCCCCEEEEe-eCCCeEEEEeCC------
Q psy16881 121 VTSVRFNHKSSLLVSGSVDK--TVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLASG-SNDKTVTIWDML------ 190 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~~~~~l~s~-s~D~~i~lwd~~------ 190 (222)
...+.|+ ++..+.+.+.+| .|+++|+++++.+.++...... -..+++. +..|+.. ..++.+.+||..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 3567887 566666777666 8999999999998877654432 2335544 4555544 457899999974
Q ss_pred --------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 191 --------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 --------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
...|+.+..+++|.++|..+
T Consensus 122 ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T 155 (262)
T 3nol_A 122 SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPES 155 (262)
T ss_dssp EEECSSCCCCEEECSSCEEECCSSSEEEEECTTT
T ss_pred EEECCCCceEEecCCCEEEEECCCCeEEEEcCCC
Confidence 23344444467899999874
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.16 E-value=0.53 Score=36.00 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceEEEeccCCcc-EEEEEEcCCCCEEEEeeCCCeEEEEeCC-------
Q psy16881 121 VTSVRFNHKSSLLVSGSVD--KTVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLASGSNDKTVTIWDML------- 190 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~~~-V~~~~~s~~~~~l~s~s~D~~i~lwd~~------- 190 (222)
...+.|+. +..+.+.+.+ +.|+.+|+.+++.+.++...... -..+++. .+++......++.+.+||..
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 55788876 5556666664 48999999999998877654432 2334544 23344445577899999974
Q ss_pred -------------CCeEEEeeCCCcEEEEeCCC
Q psy16881 191 -------------ATLLASGSNDKTVTIWDMRG 210 (222)
Q Consensus 191 -------------~~~l~s~~~d~~i~iwd~~~ 210 (222)
...|+.+..+++|.++|..+
T Consensus 101 i~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t 133 (243)
T 3mbr_X 101 FRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDT 133 (243)
T ss_dssp EECSSCCCEEEECSSCEEEECSSSEEEEECTTT
T ss_pred EeCCCCceEEeeCCCEEEEECCCCeEEEEeCCC
Confidence 22344444577899999874
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.04 E-value=0.95 Score=35.43 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEeCCCC
Q psy16881 29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDL 59 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~ 59 (222)
....++++++|+++.++..++.|..|+..+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~ 50 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS 50 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCC
Confidence 3556889999998888888999999987643
No 258
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.95 E-value=0.63 Score=37.33 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=48.1
Q ss_pred CEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCceEEEeccC------CccEEEEEEcCCCCEEEEeeCCCeEEEEeCC
Q psy16881 120 AVTSVRFNHKSSLLVSGSVD-KTVKLWDVPSLTCIKTLESH------TRYVTCCTFSCDDSLLASGSNDKTVTIWDML 190 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~d-g~I~iwd~~~~~~~~~~~~~------~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~ 190 (222)
....++.+++|+..++++.- +.|...+.. ++.+..+... ....+-++++|+|+.|++....+.+..+|+.
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 36778889999988888877 777666654 3333322111 1124578999999988887669999999864
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.27 E-value=0.15 Score=44.00 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=26.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEeccC
Q psy16881 129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLESH 159 (222)
Q Consensus 129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 159 (222)
.+..++.++.|+.|..+|.++++.+.++...
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 4677888999999999999999998877643
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.25 E-value=0.14 Score=44.45 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE-EEEEEcCCCCEEE
Q psy16881 129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV-TCCTFSCDDSLLA 176 (222)
Q Consensus 129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V-~~~~~s~~~~~l~ 176 (222)
.+..++.|+.|+.++.+|.++++.+-++......+ .-+.+..+|++.+
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 36788889999999999999999998876543221 1145555665333
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.95 E-value=0.4 Score=41.93 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=43.4
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEeCCCCceEEEeccC-CccEEEEEEcCCCCEEEEee-CC-----CeEEEEeCC
Q psy16881 123 SVRFNHKSSLLVSGSV-DKTVKLWDVPSLTCIKTLESH-TRYVTCCTFSCDDSLLASGS-ND-----KTVTIWDML 190 (222)
Q Consensus 123 ~l~~~~~~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~-~~~V~~~~~s~~~~~l~s~s-~D-----~~i~lwd~~ 190 (222)
++++..++++++.|+. ++.+.+||..+.+-...-..+ ...-.+++..+++++++.|+ .+ ..+.+||..
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 3456678888888884 557999998766433211111 11123455567899998888 44 468888874
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=93.78 E-value=1.8 Score=33.56 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=23.9
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCC
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSD 57 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~ 57 (222)
.....++++++|+++++-..+++|..|+.+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~ 61 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPD 61 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCC
Confidence 456778999999977777678898888764
No 263
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.61 E-value=2.6 Score=34.87 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=18.0
Q ss_pred eEEEEEcCC--CCeEEEecCCCeEEEEeCCCCc
Q psy16881 30 MRCVRFSPD--TRLLATGGDDETVTVWRSDDLS 60 (222)
Q Consensus 30 v~~l~~spd--g~~l~tgs~Dg~i~iwd~~~~~ 60 (222)
...++++|+ +..|..+...+.|+.++..++.
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~ 173 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY 173 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTE
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCE
Confidence 456788874 3334443333777777765443
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.79 E-value=0.79 Score=40.08 Aligned_cols=89 Identities=11% Similarity=0.245 Sum_probs=57.9
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCce--EEEec-cCCccEEEEEEcCCCCEEEEee-CCCeEEE
Q psy16881 123 SVRFNH-KSSLLVSGSVDK-----------TVKLWDVPSLTC--IKTLE-SHTRYVTCCTFSCDDSLLASGS-NDKTVTI 186 (222)
Q Consensus 123 ~l~~~~-~~~~l~sg~~dg-----------~I~iwd~~~~~~--~~~~~-~~~~~V~~~~~s~~~~~l~s~s-~D~~i~l 186 (222)
.+++.+ ++++++.|+.++ .+.+||..+++. +.... .+.....++++..++++++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 345556 778888887543 588899877643 22221 2222333467778999999988 4468999
Q ss_pred EeCC------------------------CCeEEEee-CC-----CcEEEEeCCCC
Q psy16881 187 WDML------------------------ATLLASGS-ND-----KTVTIWDMRGN 211 (222)
Q Consensus 187 wd~~------------------------~~~l~s~~-~d-----~~i~iwd~~~~ 211 (222)
||.. ..+++.|+ .+ ..+.+||+.+.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 9963 34567777 33 46888998743
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=92.45 E-value=1.9 Score=38.46 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCEEEEEeC---CCcEEEEeCCCC
Q psy16881 121 VTSVRFNHKSSLLVSGSV---DKTVKLWDVPSL 150 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~---dg~I~iwd~~~~ 150 (222)
...+.|+++|++|+..+. ...|.++|+.++
T Consensus 273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 356788899887665542 335777788654
No 266
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=92.44 E-value=3.6 Score=33.21 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=49.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCceEEEec-cC-CccEEEEEEc--CCCC-EEEEee-CCCeEEE
Q psy16881 118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP-----SLTCIKTLE-SH-TRYVTCCTFS--CDDS-LLASGS-NDKTVTI 186 (222)
Q Consensus 118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~-----~~~~~~~~~-~~-~~~V~~~~~s--~~~~-~l~s~s-~D~~i~l 186 (222)
.+.+..+..++....|+.+-++.-|-.+|.+ +.+.+..+. ++ ...+..+++. ++++ +|++++ .+.+..+
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V 258 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI 258 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence 3467888899888899999998766666654 344555442 22 2357888874 4444 565555 5668999
Q ss_pred EeCC
Q psy16881 187 WDML 190 (222)
Q Consensus 187 wd~~ 190 (222)
||..
T Consensus 259 ydr~ 262 (355)
T 3amr_A 259 YDRQ 262 (355)
T ss_dssp EESS
T ss_pred EECC
Confidence 9985
No 267
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.21 E-value=3.5 Score=32.98 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEe
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWR 55 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd 55 (222)
.....++|.|+|+++++ ..+|+|++++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence 44678999999996555 5679998887
No 268
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.64 E-value=3.4 Score=31.21 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=38.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE------EEe-ccCCccEEEEEEcCCCCEEEEeeCCCeE
Q psy16881 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCI------KTL-ESHTRYVTCCTFSCDDSLLASGSNDKTV 184 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~------~~~-~~~~~~V~~~~~s~~~~~l~s~s~D~~i 184 (222)
...+.|+++|.+.++ .||.|.-++-.+...- ..+ ...=..+..+.|+|+|.+-+.. |+.+
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 356888999886666 4698877775331110 111 1111457899999999877766 7764
No 269
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=91.31 E-value=7.1 Score=34.22 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=49.3
Q ss_pred EEEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCceEEEecc--CC-------ccEEEEEEcCCCC-
Q psy16881 123 SVRFNHKSSLLVSGSVDK-------------------TVKLWDVPSLTCIKTLES--HT-------RYVTCCTFSCDDS- 173 (222)
Q Consensus 123 ~l~~~~~~~~l~sg~~dg-------------------~I~iwd~~~~~~~~~~~~--~~-------~~V~~~~~s~~~~- 173 (222)
.+++++.++.++.++.++ .|.-+|.++++.+-.++. |. .++....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 467888888888888766 388999999998876653 22 1222222233554
Q ss_pred --EEEEeeCCCeEEEEeCCCCe
Q psy16881 174 --LLASGSNDKTVTIWDMLATL 193 (222)
Q Consensus 174 --~l~s~s~D~~i~lwd~~~~~ 193 (222)
.++.++.+|.+.++|..+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCC
T ss_pred EEEEEEECCCCEEEEEECCCCC
Confidence 68889999999999976443
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=91.22 E-value=4.4 Score=31.69 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=18.8
Q ss_pred cceEEEEEcCCCC-eEEEecCCCeEEEEeCCC
Q psy16881 28 SNMRCVRFSPDTR-LLATGGDDETVTVWRSDD 58 (222)
Q Consensus 28 ~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~~~ 58 (222)
..+..++|+++++ +..+-...++|..+++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g 61 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCC
Confidence 3456788887654 444555567787777653
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=90.96 E-value=0.93 Score=39.40 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=32.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccE-EEEEEcCCCCE
Q psy16881 129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV-TCCTFSCDDSL 174 (222)
Q Consensus 129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V-~~~~~s~~~~~ 174 (222)
.+..++.++.|+.++.+|.++++.+-++......+ .-+.+..+|++
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 46788889999999999999999988775433211 12344456653
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.67 E-value=4.8 Score=31.14 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=46.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC-CC-eEEEEeC
Q psy16881 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN-DK-TVTIWDM 189 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D~-~i~lwd~ 189 (222)
.....++|+++++.+++-..++.|..||.... ....+.. ...+..++++++|+++++... ++ .|..+|.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 34678999999887777667889999997643 3333322 345788999999997665533 22 3555553
No 273
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=90.61 E-value=5.8 Score=32.01 Aligned_cols=68 Identities=7% Similarity=0.094 Sum_probs=48.9
Q ss_pred CEEEEEE--cCC-CC-EEEEEeCCCcEEEEeCC-------CCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881 120 AVTSVRF--NHK-SS-LLVSGSVDKTVKLWDVP-------SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188 (222)
Q Consensus 120 ~i~~l~~--~~~-~~-~l~sg~~dg~I~iwd~~-------~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd 188 (222)
.+..+++ ++. ++ +++....+|.+..|++. +.+.+.++... ..+..+..++....|+.+-++.-|-.+|
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEe
Confidence 3444555 664 44 68888889999999883 33556777654 3578888998888999998886665555
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=90.59 E-value=6.1 Score=32.19 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=24.0
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE
Q psy16881 121 VTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176 (222)
Q Consensus 121 i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 176 (222)
...+++++.++ ++++-...+.|.+.++........+...-.....++++|.+..|+
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly 217 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 217 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEE
Confidence 34555554333 233333345555555543322222222223345566665444444
No 275
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=90.47 E-value=9.1 Score=34.03 Aligned_cols=112 Identities=10% Similarity=0.161 Sum_probs=66.9
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeee
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (222)
..|.++...++|++|..|..++-|..|+..++.... +...
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~--------------------------------------- 445 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQR--------------------------------------- 445 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTT---------------------------------------
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecC---------------------------------------
Confidence 568888888888845556666778888876543211 0000
Q ss_pred ccCCccccccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec------cCCccEEEEEEcCCCCEEEEeeCC
Q psy16881 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE------SHTRYVTCCTFSCDDSLLASGSND 181 (222)
Q Consensus 108 ~~~~~~~~~h~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~------~~~~~V~~~~~s~~~~~l~s~s~D 181 (222)
... -+...|.++..+++|++.+.. . +-+.+||.++++...... .....|.++..+++|++.+... .
T Consensus 446 ---~~~--l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 446 ---NSQ--LVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp ---TSC--CSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred ---CCC--cCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 000 023457888888877755544 4 457788887664432111 1235689999999988776554 4
Q ss_pred CeEEEEe
Q psy16881 182 KTVTIWD 188 (222)
Q Consensus 182 ~~i~lwd 188 (222)
| +..||
T Consensus 518 G-l~~~~ 523 (795)
T 4a2l_A 518 G-LSVFK 523 (795)
T ss_dssp C-EEEEE
T ss_pred c-eEEEe
Confidence 3 55554
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=90.28 E-value=6.9 Score=32.31 Aligned_cols=68 Identities=4% Similarity=-0.063 Sum_probs=42.6
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEe-c-cCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeC
Q psy16881 122 TSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL-E-SHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDM 189 (222)
Q Consensus 122 ~~l~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~-~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~ 189 (222)
..+++++ +++++++-..++.|..+|..++.....+ . +....-..++|+|+++.|+ +-.....|..++.
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~ 302 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY 302 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 4467888 5665555556778989988766542222 1 1122234689999998554 4455678888774
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=90.21 E-value=6 Score=31.51 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=12.2
Q ss_pred eEEEEEcCCCCeE-EEecCCCeEEEEeCC
Q psy16881 30 MRCVRFSPDTRLL-ATGGDDETVTVWRSD 57 (222)
Q Consensus 30 v~~l~~spdg~~l-~tgs~Dg~i~iwd~~ 57 (222)
+..++|++....| .+-...++|+.++++
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~ 103 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLN 103 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecC
Confidence 3445555433322 233334555555443
No 278
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.68 E-value=3 Score=36.92 Aligned_cols=68 Identities=7% Similarity=0.049 Sum_probs=35.1
Q ss_pred EEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEE-EeeCCCeEEEEeC
Q psy16881 122 TSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA-SGSNDKTVTIWDM 189 (222)
Q Consensus 122 ~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-s~s~D~~i~lwd~ 189 (222)
..++++|.+..|+.+.. .+.|.+.++........+...-.....++|++++..|+ +-+..+.|..+|+
T Consensus 499 ~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 499 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 45667776554444433 25666666542211111111122345688887654444 4445567777776
No 279
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=89.55 E-value=11 Score=33.80 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=28.5
Q ss_pred EEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC-C-CeEEEEeC
Q psy16881 122 TSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN-D-KTVTIWDM 189 (222)
Q Consensus 122 ~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D-~~i~lwd~ 189 (222)
..|+++..++.|+ +-...+.|.+.++........+...-.....++++|....|+.+-+ . ..|...++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 3455554443333 3333455656655432222222222233555666655444433321 1 34444444
No 280
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=89.38 E-value=2.1 Score=35.65 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=50.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------------eEEEecc------CCccEEEEEEcCC---CCEEEEe
Q psy16881 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT------------CIKTLES------HTRYVTCCTFSCD---DSLLASG 178 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~------------~~~~~~~------~~~~V~~~~~s~~---~~~l~s~ 178 (222)
.|..+..+|+|++++..+. ..|.|-.+..+. ..+.+.. ....|..+.|||- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 4556889999998888764 578887775211 1122221 2467999999985 5688888
Q ss_pred eCCCeEEEEeCC
Q psy16881 179 SNDKTVTIWDML 190 (222)
Q Consensus 179 s~D~~i~lwd~~ 190 (222)
..|++|++||+.
T Consensus 146 tsD~~Ir~yDl~ 157 (452)
T 3pbp_A 146 KEDDTITMFDIL 157 (452)
T ss_dssp ETTSCEEEEETT
T ss_pred ecCCEEEEEEcc
Confidence 999999999985
No 281
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=89.28 E-value=7 Score=31.26 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEe
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWR 55 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd 55 (222)
.....++|.|+|+++++ ..+|+|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence 44678999999986555 5669998886
No 282
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=88.74 E-value=8 Score=30.93 Aligned_cols=65 Identities=6% Similarity=0.064 Sum_probs=41.2
Q ss_pred EEEEE---cCCCCEEEEEe-------------CCCcEEEEeCC---CCceEEEec--c-----------CCccEEEEEEc
Q psy16881 122 TSVRF---NHKSSLLVSGS-------------VDKTVKLWDVP---SLTCIKTLE--S-----------HTRYVTCCTFS 169 (222)
Q Consensus 122 ~~l~~---~~~~~~l~sg~-------------~dg~I~iwd~~---~~~~~~~~~--~-----------~~~~V~~~~~s 169 (222)
..+.+ ++++++++... .++.|..+|+. +++.+.... . -......++.+
T Consensus 66 sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD 145 (334)
T 2p9w_A 66 SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD 145 (334)
T ss_dssp EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred eEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC
Confidence 56777 56666655433 25778899988 676654332 1 11236789999
Q ss_pred CCCCEEEEeeCC-CeEEE
Q psy16881 170 CDDSLLASGSND-KTVTI 186 (222)
Q Consensus 170 ~~~~~l~s~s~D-~~i~l 186 (222)
++|+.-++++.. +.|..
T Consensus 146 ~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 146 RDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp TTSCEEEEEEESSCEEEE
T ss_pred CCCCEEEeCCCCCCeEEE
Confidence 999988877766 44333
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=88.72 E-value=8.6 Score=31.28 Aligned_cols=71 Identities=7% Similarity=-0.004 Sum_probs=43.8
Q ss_pred CEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881 120 AVTSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML 190 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~ 190 (222)
....|+++|.+..|+-... .+.|...++........+...-.....+++++++..|+.+ +....|..+|+.
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 3567888887666555543 3677777775332222223333457789999877766655 345678777763
No 284
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.11 E-value=9.1 Score=30.82 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=62.0
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCcc
Q psy16881 34 RFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSET 113 (222)
Q Consensus 34 ~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (222)
-++|..+.||.=. ..+|++|++++...+..... ++.+..|.++...... -.....+..|.+.........
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~~----~e~VvfWkWis~~~L~-----lVT~taVyHWs~~~~s~P~kv 142 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVA-----LVTDNAVYHWSMEGESQPVKM 142 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC----SSCEEEEEECSSSEEE-----EEESSEEEEEESSTTCCCEEE
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhcceec----CCccEEEEecCCCeEE-----EEcCCcEEEEcccCCCCCcee
Confidence 3678888777654 68899999998766654432 2345566654432110 001112333332111111223
Q ss_pred cccc----CCCEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCceEEEeccCCcc
Q psy16881 114 VGRH----TSAVTSVRFNHKSSLLVSGS-------VDKTVKLWDVPSLTCIKTLESHTRY 162 (222)
Q Consensus 114 ~~~h----~~~i~~l~~~~~~~~l~sg~-------~dg~I~iwd~~~~~~~~~~~~~~~~ 162 (222)
+..| ...|..-+.+++.+.++..+ -.|.+.+|..+. +.-+.+++|...
T Consensus 143 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~ 201 (365)
T 2xzh_A 143 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS 201 (365)
T ss_dssp EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEE
T ss_pred eecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeee
Confidence 3333 24566666677777433322 246788998764 344566777543
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=87.77 E-value=7.6 Score=29.68 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=47.6
Q ss_pred ccCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881 116 RHTSAVTSVRFNHKSSLLVS-GSVDKTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188 (222)
Q Consensus 116 ~h~~~i~~l~~~~~~~~l~s-g~~dg~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd 188 (222)
+-...+..++|+|+++.+++ ...++.|...|.. ++.+..+.. .......+++.+++.++++.-.++.+.+++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 33456889999998775554 6667788888987 777766532 123467788887777655533444555554
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=87.29 E-value=13 Score=31.54 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=19.0
Q ss_pred eEEEEEcCC-CCeE-EEecCCCeEEEEeCCCCce
Q psy16881 30 MRCVRFSPD-TRLL-ATGGDDETVTVWRSDDLSL 61 (222)
Q Consensus 30 v~~l~~spd-g~~l-~tgs~Dg~i~iwd~~~~~~ 61 (222)
...|+|+|. +..| ++-...+.|++.|+++..+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v 174 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML 174 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE
Confidence 567889883 4444 4433346677777765443
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=86.18 E-value=1.4 Score=38.97 Aligned_cols=67 Identities=7% Similarity=-0.012 Sum_probs=33.8
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC-C-CeEEEEeC
Q psy16881 123 SVRFNHKS-SLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN-D-KTVTIWDM 189 (222)
Q Consensus 123 ~l~~~~~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~-D-~~i~lwd~ 189 (222)
.+++++.+ +++++-...+.|.+.++........+...-.....++++|.+..|+.+.. . +.|..+++
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 45666444 33344345667888887644332222222233456778876554444332 2 45655554
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=84.80 E-value=17 Score=30.74 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=43.2
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEeCC-------CCce--------------EEEeccCCccEEEEEEcCCCCEEE-Ee
Q psy16881 122 TSVRFNHKSS-LLVSGSVDKTVKLWDVP-------SLTC--------------IKTLESHTRYVTCCTFSCDDSLLA-SG 178 (222)
Q Consensus 122 ~~l~~~~~~~-~l~sg~~dg~I~iwd~~-------~~~~--------------~~~~~~~~~~V~~~~~s~~~~~l~-s~ 178 (222)
..++++|++. ++++-..++.|..+|+. ++.. +... +.......++|+|+|+.|+ +=
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEE
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEe
Confidence 3567888554 55555667789999986 4432 1222 2234457899999999544 44
Q ss_pred eCCCeEEEEeC
Q psy16881 179 SNDKTVTIWDM 189 (222)
Q Consensus 179 s~D~~i~lwd~ 189 (222)
+....|+.++.
T Consensus 329 ~~~h~I~kid~ 339 (496)
T 3kya_A 329 INNHYFMRSDY 339 (496)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCEEEEEec
Confidence 56678888654
No 289
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=84.28 E-value=15 Score=29.62 Aligned_cols=72 Identities=3% Similarity=-0.050 Sum_probs=45.4
Q ss_pred CCEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881 119 SAVTSVRFNHKSSLLVSGSV-D-KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML 190 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~~-d-g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~ 190 (222)
.....++++|.+..|+.+.. . +.|...+.............-.....+++++++..|+.+ +..+.|..+|+.
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 45678999987776665554 3 567777775332222222333456789999876666544 455678888864
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=84.15 E-value=13 Score=29.05 Aligned_cols=68 Identities=4% Similarity=-0.060 Sum_probs=34.4
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC--CCeEEEEeC
Q psy16881 122 TSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN--DKTVTIWDM 189 (222)
Q Consensus 122 ~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~--D~~i~lwd~ 189 (222)
..+++++.+. ++++-...+.|.+.++........+...-.....++++|.+..|+.+.. .+.|...++
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 152 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 152 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence 4566665443 3344444566777776533222222233344567777776555544432 345555554
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=83.93 E-value=8.5 Score=31.65 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=41.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC-C----cEEEEeCCCCceE--EEeccCCccEEEEEEcC-CCCEEEEeeCCCeEEEEeC
Q psy16881 118 TSAVTSVRFNHKSSLLVSGSVD-K----TVKLWDVPSLTCI--KTLESHTRYVTCCTFSC-DDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 118 ~~~i~~l~~~~~~~~l~sg~~d-g----~I~iwd~~~~~~~--~~~~~~~~~V~~~~~s~-~~~~l~s~s~D~~i~lwd~ 189 (222)
......++++++++.|+.+... + .+.+.+ ..+... ..+.. -.....++++| ++.++++-..++.|..++.
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 3456789999999966666542 2 232333 222211 22221 12245678999 6777777667778888886
Q ss_pred C
Q psy16881 190 L 190 (222)
Q Consensus 190 ~ 190 (222)
.
T Consensus 256 ~ 256 (430)
T 3tc9_A 256 T 256 (430)
T ss_dssp T
T ss_pred C
Confidence 4
No 292
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=83.92 E-value=23 Score=31.46 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=48.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec--------cCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881 118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE--------SHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~--------~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
...|.++..+++|++. .|+.++-|..||..+++...-.. .....|.++..+.+++.|..|+.++-+..+|.
T Consensus 356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 3468899888887754 47777788899987654432211 12356899999888884555666566777764
No 293
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=82.39 E-value=13 Score=27.71 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=44.3
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeCCC
Q psy16881 119 SAVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA 191 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~~~ 191 (222)
.....++++++++.|+.+. ..+.|.++|.........+.. -.....++++ .+.++++....+.|..+|..+
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 3467899999877665554 567899999875433333332 2334566665 344444444567899998853
No 294
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=81.72 E-value=17 Score=28.32 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=43.5
Q ss_pred CEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881 120 AVTSVRFNHKSSLLVSGSVD--KTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML 190 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~d--g~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~ 190 (222)
....++++|.+..++.+... +.|...+.. +.....+ ...-.....+++++++..|+.+ +..+.|..+|+.
T Consensus 121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 45678888876655555543 577777764 3333322 2223456789999877666544 445678888864
No 295
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.59 E-value=13 Score=32.31 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=37.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------ceEEEeccCCccEEEEE-----EcCCCCEEEEee
Q psy16881 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSL----------TCIKTLESHTRYVTCCT-----FSCDDSLLASGS 179 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~----------~~~~~~~~~~~~V~~~~-----~s~~~~~l~s~s 179 (222)
....+|+++|+-..|--.|..|-.|++... ..+.++..|.++-.-.+ -.++|++|++..
T Consensus 380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred ccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 355789998854555557999999998642 34556666655433222 246777777743
No 296
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=81.44 E-value=18 Score=28.69 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeC
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRS 56 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~ 56 (222)
.....++|.|+|++|+++...|+|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 44678999999993444567899988874
No 297
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=81.32 E-value=18 Score=28.59 Aligned_cols=70 Identities=3% Similarity=-0.004 Sum_probs=42.3
Q ss_pred CEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceEEEe-ccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881 120 AVTSVRFNHKSSLLVSGSV-D-KTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML 190 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~-d-g~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~ 190 (222)
....++++|.+..++.... . +.|...++... ....+ ...-.....+++++++..|+.+ +..+.|..+|+.
T Consensus 160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 4577888886665554443 3 66777776532 22222 2223346789999876666544 445678888764
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.45 E-value=3.2 Score=38.17 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe
Q psy16881 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL 156 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~ 156 (222)
.+.++...++..++++-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4666777777789999999999999999999988764
No 299
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=80.26 E-value=21 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=24.3
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCC
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDD 58 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~ 58 (222)
.....++|.|||+++++--..|+|++++..+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~ 62 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKT 62 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCC
Confidence 4567899999999877765589998887543
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=79.79 E-value=22 Score=28.55 Aligned_cols=61 Identities=8% Similarity=0.171 Sum_probs=41.4
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-Cce--EEEeccCCccEEEEEEcC-CCCEEEEeeCC
Q psy16881 120 AVTSVRFNHKSSLLVSGS-VDKTVKLWDVPS-LTC--IKTLESHTRYVTCCTFSC-DDSLLASGSND 181 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~-~~~--~~~~~~~~~~V~~~~~s~-~~~~l~s~s~D 181 (222)
..+.++|+|+++.++.+. ..+.|..|++.. ++. ...+ .-.....-++++. +|++.+++..+
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 357899999998766664 567899999863 332 1233 2234567788998 59988766544
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=79.52 E-value=27 Score=29.35 Aligned_cols=145 Identities=12% Similarity=0.191 Sum_probs=71.9
Q ss_pred EEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCcc
Q psy16881 34 RFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSET 113 (222)
Q Consensus 34 ~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (222)
-++|..+.||-=. ..++++|++++...+..... +..+..|.++...... -.....+..|.+........+
T Consensus 72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~----~e~VvfWkWis~~~l~-----lVT~taVyHWsi~~~s~P~kv 141 (494)
T 1bpo_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVA-----LVTDNAVYHWSMEGESQPVKM 141 (494)
T ss_dssp EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC----SSCCCEEEEEETTEEE-----EECSSEEEEEESSSSCCCEEE
T ss_pred eeCCCCcEEEEec-CCeEEEEchHHhhhhcceec----CCCceEEEecCCCeEE-----EEcCCeeEEecccCCCCchhh
Confidence 3678888777554 68999999987766554422 2335556554322110 001112333332111112223
Q ss_pred cccc----CCCEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCC--C-CEEEEee
Q psy16881 114 VGRH----TSAVTSVRFNHKSSLLVSGS-------VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCD--D-SLLASGS 179 (222)
Q Consensus 114 ~~~h----~~~i~~l~~~~~~~~l~sg~-------~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~--~-~~l~s~s 179 (222)
+..| ...|..-..+++.+.++..+ -.|.+.+|..+.. .-+.+++|...-..+.+.-+ . .++..+.
T Consensus 142 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp EECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred eecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 3333 24566666677777544322 2467889987643 34556676554333333211 1 1232333
Q ss_pred CC---CeEEEEeC
Q psy16881 180 ND---KTVTIWDM 189 (222)
Q Consensus 180 ~D---~~i~lwd~ 189 (222)
.. +++.+-++
T Consensus 221 r~~~g~kLhi~Ei 233 (494)
T 1bpo_A 221 RGQAGGKLHIIEV 233 (494)
T ss_dssp CSTTCCEEEEEEC
T ss_pred ecCCCcEEEEEEc
Confidence 22 56777665
No 302
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=79.08 E-value=26 Score=29.03 Aligned_cols=30 Identities=10% Similarity=0.219 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCC
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSD 57 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~ 57 (222)
.....++|.|+|+++++-...+.|++++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPE 56 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence 346789999999977765444578777654
No 303
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=78.98 E-value=9 Score=28.91 Aligned_cols=65 Identities=8% Similarity=-0.017 Sum_probs=40.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCcc--------EEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY--------VTCCTFSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~--------V~~~~~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
.+..++|+|+|.+.+. .+|.+.-.+..+.+.. .+-+.... -.++.|+++|.+.++ .||.|.-++-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 4558999998874444 6677666565442110 01011112 368899999998877 5688887775
No 304
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=77.21 E-value=38 Score=29.90 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=35.4
Q ss_pred CCCCCcccceEEEeeee-------ee-ccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCc
Q psy16881 8 DGPSLFNGTELILRGSV-------HI-GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS 60 (222)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-------~~-~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~ 60 (222)
+|-+.|+|..++...++ .+ ...|++|...++|+.|-.|..++-|..||..+..
T Consensus 38 ~GL~ryDG~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 98 (781)
T 3v9f_A 38 EGLNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQS 98 (781)
T ss_dssp SCEEEECSSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTE
T ss_pred CcCccccCCceEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCCCe
Confidence 67888899887554321 12 3458999888888824445566468889876543
No 305
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=76.72 E-value=25 Score=27.48 Aligned_cols=71 Identities=6% Similarity=0.009 Sum_probs=40.0
Q ss_pred CEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881 120 AVTSVRFNHKSSLLVSGSV--DKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML 190 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~ 190 (222)
....++++|.+..++-+.. .+.|...+..-......+...-.....+++++++..|+.+ +..+.|..+|+.
T Consensus 123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 3467778876665555543 4567777664222111122222345778888866655544 445677777764
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.51 E-value=4.5 Score=37.22 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEee
Q psy16881 29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMET 65 (222)
Q Consensus 29 ~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~ 65 (222)
.+.+++..++..+|++-+.|+++|+|++.++.++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4667777888889999999999999999999888764
No 307
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=76.23 E-value=46 Score=32.44 Aligned_cols=116 Identities=15% Similarity=0.247 Sum_probs=57.0
Q ss_pred EcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCccCCcccceeeeeeeeeEeeeeeeeccCCccc
Q psy16881 35 FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETV 114 (222)
Q Consensus 35 ~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (222)
++|..++||.=. ..+++||++++...+.... .+..+..|.++...... -.....+..|.+........++
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~----~~e~VvfWkWis~~~l~-----lVT~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT----MTDDVTFWKWISLNTVA-----LVTDNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccc----cCCCceEEEecCCCeeE-----EEcCCeEEEeccCCCCccHHHH
Confidence 566677766543 5788999887554433221 22345566654332110 0111223344332111222344
Q ss_pred ccc----CCCEEEEEEcCCCCEEE-EE------eCCCcEEEEeCCCCceEEEeccCCc
Q psy16881 115 GRH----TSAVTSVRFNHKSSLLV-SG------SVDKTVKLWDVPSLTCIKTLESHTR 161 (222)
Q Consensus 115 ~~h----~~~i~~l~~~~~~~~l~-sg------~~dg~I~iwd~~~~~~~~~~~~~~~ 161 (222)
..| ...|..-..+++.+.++ +| .-.|.+.+|+...+ .-+.+.||..
T Consensus 143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 444 34565666677777544 33 24578889987532 2233445543
No 308
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=76.11 E-value=41 Score=29.69 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=41.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccC-----CccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESH-----TRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-----~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
..|.++..++++++.+ |+. +-|.++|..+++........ ...|.++..+++|++.+.....| +..+|.
T Consensus 450 ~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~ 522 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP 522 (781)
T ss_dssp CCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT
T ss_pred CeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC
Confidence 4577787777766444 444 55778887765443222111 35689999999888776543344 555654
No 309
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=75.13 E-value=5.7 Score=35.26 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec
Q psy16881 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE 157 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~ 157 (222)
.|.++.+ +..++++-+.|.++|+||+++++++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 3555554 36799999999999999999999887654
No 310
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=74.24 E-value=32 Score=27.59 Aligned_cols=69 Identities=7% Similarity=-0.038 Sum_probs=43.7
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881 120 AVTSVRFNHKSSLLVSGS-VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
..+.|+++++++.|+.+. ..+.|..+|+........+...-.....+++. .+.++.+-...+.|..+|.
T Consensus 247 ~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 247 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp CEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEEC
Confidence 467899998776655554 45678888876432222233233345677773 4556666667788888883
No 311
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.14 E-value=3 Score=39.08 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEe
Q psy16881 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL 156 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~ 156 (222)
+.++...++..++++-+.|+++|||++.+++++.+.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 344455567789999999999999999999998764
No 312
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=72.27 E-value=66 Score=30.32 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCCCCcccce--EEEeeeeeeccceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeeccCCCcceeeccceecCcc
Q psy16881 7 GDGPSLFNGTE--LILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84 (222)
Q Consensus 7 ~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
+++-.|+++.. ....+.+-.+..|...+. ++..|+.++ .+.+.++.++++.+.......
T Consensus 491 ~~~Irli~~~~~~~~~~w~~p~~~~I~~As~--n~~~vvva~-g~~l~~fel~~~~L~~~~~~~---------------- 551 (1158)
T 3ei3_A 491 SASVRLVSQEPKALVSEWKEPQAKNISVASC--NSSQVVVAV-GRALYYLQIHPQELRQISHTE---------------- 551 (1158)
T ss_dssp SSCEEEEESSSCCEEEEECCTTCCCCCEEEE--CSSEEEEEE-TTEEEEEEEETTEEEEEEEEE----------------
T ss_pred cCEEEEEECCCCeEEEEEECCCCCEEEEEEe--CCCEEEEEE-CCEEEEEEeeCCceeeecccC----------------
Q ss_pred CCcccceeeeeeeeeEeeeeeeeccCCccccccCCCEEEEEEcCCC------CEEEEEeC-CCcEEEEeCCCCceEEEec
Q psy16881 85 PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS------SLLVSGSV-DKTVKLWDVPSLTCIKTLE 157 (222)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~------~~l~sg~~-dg~I~iwd~~~~~~~~~~~ 157 (222)
-...|.|+++.+.. ++++.|.+ |++|+|+++.+.+.+....
T Consensus 552 --------------------------------l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~ 599 (1158)
T 3ei3_A 552 --------------------------------MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM 599 (1158)
T ss_dssp --------------------------------CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred --------------------------------CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE
Q ss_pred c----CCccEEEEEEcCCCCEEEEeeCCCeEEEEeC
Q psy16881 158 S----HTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189 (222)
Q Consensus 158 ~----~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd~ 189 (222)
. -...|.-+.+ ....+|..|-.||.+.-+.+
T Consensus 600 L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 600 LGGEIIPRSILMTTF-ESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp CCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEEEE
T ss_pred CCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEE
No 313
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=71.29 E-value=51 Score=28.56 Aligned_cols=70 Identities=4% Similarity=-0.064 Sum_probs=41.3
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC--CCeEEEEeC
Q psy16881 120 AVTSVRFNHKSSLLV-SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN--DKTVTIWDM 189 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~--D~~i~lwd~ 189 (222)
....++++..++.++ +-...+.|.+.++........+...-.....++++|.+..|+.+.. ...|...++
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~ 157 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 157 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEEC
Confidence 467788888665444 4455678989888643322222233334567888887665554433 345555554
No 314
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=70.84 E-value=59 Score=29.18 Aligned_cols=71 Identities=7% Similarity=-0.000 Sum_probs=45.4
Q ss_pred CEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe-eCCCeEEEEeCC
Q psy16881 120 AVTSVRFNHKSSLLVSGSVD--KTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG-SNDKTVTIWDML 190 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~-s~D~~i~lwd~~ 190 (222)
....|+++|.+..|+-+.+. +.|.+.++........+...-.....|++++.+..|+.+ .....|...++.
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 46788898876666665542 568888876433333333333567889999777666655 344678888764
No 315
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.69 E-value=4.5 Score=37.94 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeec
Q psy16881 30 MRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN 66 (222)
Q Consensus 30 v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~ 66 (222)
+.+++..++..+|++-+.|+++|+|++.++.++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3445566788899999999999999999999887653
No 316
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=68.10 E-value=10 Score=33.74 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=29.9
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEeCCCCceEEeec
Q psy16881 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN 66 (222)
Q Consensus 28 ~~v~~l~~spdg~~l~tgs~Dg~i~iwd~~~~~~~~~~~ 66 (222)
..|.++.+ +..+|++-+.|.++|+|+++++.++.+..
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 34666655 46799999999999999999998877653
No 317
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=68.04 E-value=39 Score=26.72 Aligned_cols=56 Identities=7% Similarity=0.054 Sum_probs=35.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EEEec---cCCccEEEEEEcCC---CCEEEEe
Q psy16881 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC--IKTLE---SHTRYVTCCTFSCD---DSLLASG 178 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~--~~~~~---~~~~~V~~~~~s~~---~~~l~s~ 178 (222)
....++|.|+|+++++ ..+|.|.+++ +++. +..+. ........++|+|+ +..|+.+
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 3568999999985554 5569999998 3332 22221 12345678999998 4445443
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=67.00 E-value=48 Score=26.67 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=44.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l 186 (222)
-.+++.++.-..++.-+.-|.|.+||+.++.++..-.-..+.|..-+.+....=++.....|.+.-
T Consensus 262 PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~ 327 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 327 (365)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEE
T ss_pred eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEE
Confidence 456777777778888888999999999999998765555555654444433333444446665533
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=63.28 E-value=56 Score=26.14 Aligned_cols=69 Identities=6% Similarity=0.075 Sum_probs=43.0
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------------CCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEe-eC
Q psy16881 119 SAVTSVRFNHKSSLLVSGS-----------------VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG-SN 180 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~-----------------~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~-s~ 180 (222)
...+.+.+.++|.+.++.. ..|.|..+|.. +. ..+...-...+.++|||+++.|+.+ +.
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCC
Confidence 3568888888888666653 12344444442 22 2222222345789999999877765 45
Q ss_pred CCeEEEEeCC
Q psy16881 181 DKTVTIWDML 190 (222)
Q Consensus 181 D~~i~lwd~~ 190 (222)
.+.|..|++.
T Consensus 242 ~~~I~~~~~~ 251 (355)
T 3sre_A 242 AHKIHVYEKH 251 (355)
T ss_dssp GTEEEEEEEC
T ss_pred CCeEEEEEEC
Confidence 6789999874
No 320
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=58.49 E-value=62 Score=25.07 Aligned_cols=66 Identities=8% Similarity=0.045 Sum_probs=38.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEec-c---CCccEEEEEEcCCCCEEEEeeCCCeEE
Q psy16881 118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-S---HTRYVTCCTFSCDDSLLASGSNDKTVT 185 (222)
Q Consensus 118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~---~~~~V~~~~~s~~~~~l~s~s~D~~i~ 185 (222)
...+..+.+.++++.+ .++.+|.+.+.+...++.-..+. . +...+..+.+.+++.+++++. ++.+.
T Consensus 204 ~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL 273 (327)
T ss_dssp SSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred CCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence 3456778888877654 45567887776422232222221 1 223478888988777766654 55553
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=56.68 E-value=46 Score=25.17 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=45.2
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCceEEE--eccCCccEEEEEEcCCCCEEEEeeCC-----CeEEEEeCC----
Q psy16881 129 KSSLLVSGSVD-------KTVKLWDVPSLTCIKT--LESHTRYVTCCTFSCDDSLLASGSND-----KTVTIWDML---- 190 (222)
Q Consensus 129 ~~~~l~sg~~d-------g~I~iwd~~~~~~~~~--~~~~~~~V~~~~~s~~~~~l~s~s~D-----~~i~lwd~~---- 190 (222)
++++++.|+.+ ..+.+||+.+.+-... +......-.++.+ ++.+++.|+.+ ..+.+||+.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 45666666542 3588899876643221 1111111122222 56677777654 368888874
Q ss_pred -------------------CCeEEEeeCCC-----cEEEEeCCCC
Q psy16881 191 -------------------ATLLASGSNDK-----TVTIWDMRGN 211 (222)
Q Consensus 191 -------------------~~~l~s~~~d~-----~i~iwd~~~~ 211 (222)
..+++.|+.++ .+.+||+.++
T Consensus 233 ~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 23466666543 4888998754
No 322
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=56.36 E-value=69 Score=25.32 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=35.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEEec---cCCccEEEEEEcCC---CCEEEE
Q psy16881 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT-CIKTLE---SHTRYVTCCTFSCD---DSLLAS 177 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~-~~~~~~---~~~~~V~~~~~s~~---~~~l~s 177 (222)
....++|.++|+++++ ..+|.|+++| .+++ .+..+. ........++++|+ +..|+.
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv 92 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYL 92 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEE
Confidence 3577899999885554 5569999987 3444 222221 12344778999997 444443
No 323
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.36 E-value=70 Score=27.67 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=39.7
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCceEEEecc-CCccEEEEEEcCCCCEEEEee
Q psy16881 121 VTSVRFNHKSSLLVSGSVD------------KTVKLWDVPSLTCIKTLES-HTRYVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~d------------g~I~iwd~~~~~~~~~~~~-~~~~V~~~~~s~~~~~l~s~s 179 (222)
.-.|.|++.|++++.-..+ +.+.+.+..+++...-+.+ ...+++-++|+|+++.|+..-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3568899999976665432 2355556666665443333 346799999999999887653
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=54.20 E-value=98 Score=26.03 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=46.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 121 i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~l 186 (222)
-.+++.++.-..++.-+.-|.|.+||+.++.++..-.-..+.|..-+.+....=++.....|.|.-
T Consensus 261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~ 326 (494)
T 1bpo_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 326 (494)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEE
T ss_pred eeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEE
Confidence 456788888888888889999999999999998765555555655554444333444456665543
No 325
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=53.87 E-value=95 Score=25.79 Aligned_cols=29 Identities=14% Similarity=-0.041 Sum_probs=22.7
Q ss_pred cceEEEEEcCCCC-eEEEecCCCeEEEEeC
Q psy16881 28 SNMRCVRFSPDTR-LLATGGDDETVTVWRS 56 (222)
Q Consensus 28 ~~v~~l~~spdg~-~l~tgs~Dg~i~iwd~ 56 (222)
.....++|.|||+ +|+++...|.|++++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 4467799999996 5566678999999864
No 326
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=53.05 E-value=66 Score=24.20 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceEEE--eccCCccEEEEEEcCCCCEEEEeeCC-----CeEEEEeCC
Q psy16881 129 KSSLLVSGSVD-----KTVKLWDVPSLTCIKT--LESHTRYVTCCTFSCDDSLLASGSND-----KTVTIWDML 190 (222)
Q Consensus 129 ~~~~l~sg~~d-----g~I~iwd~~~~~~~~~--~~~~~~~V~~~~~s~~~~~l~s~s~D-----~~i~lwd~~ 190 (222)
++++++.|+.+ +.+.+||+.+.+-... +......-.++.+ ++.+++.|+.+ ..+.+||+.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCC
Confidence 46677777654 4588899877643221 1111111122222 56677777654 467888874
No 327
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=51.44 E-value=1.2e+02 Score=26.25 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCeE-EEecCCCeEEEEeCCC
Q psy16881 29 NMRCVRFSPDTRLL-ATGGDDETVTVWRSDD 58 (222)
Q Consensus 29 ~v~~l~~spdg~~l-~tgs~Dg~i~iwd~~~ 58 (222)
.+..|+|++.+..| .+-..+++|+.++++.
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g 68 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNG 68 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence 45678888765544 4445567777777653
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=51.16 E-value=77 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=13.1
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCc
Q psy16881 129 KSSLLVSGSVD------KTVKLWDVPSLT 151 (222)
Q Consensus 129 ~~~~l~sg~~d------g~I~iwd~~~~~ 151 (222)
++++++.|+.+ ..+.+||..+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 34555555544 346777776654
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=49.27 E-value=72 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEeccC
Q psy16881 130 SSLLVSGSVDKTVKLWDVPSLTCIKTLESH 159 (222)
Q Consensus 130 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 159 (222)
+..++.++.||.|.-.|.++++..-++...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 356888999999999999999887776543
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=46.24 E-value=1.2e+02 Score=25.08 Aligned_cols=59 Identities=5% Similarity=0.038 Sum_probs=36.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EEEecc------CCccEEEEEEcCC---CCEEEEe
Q psy16881 120 AVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC--IKTLES------HTRYVTCCTFSCD---DSLLASG 178 (222)
Q Consensus 120 ~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~--~~~~~~------~~~~V~~~~~s~~---~~~l~s~ 178 (222)
....++|.|+|+++++-...+.|++++..+++. +..+.. .......++|+|+ +..|+..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 456899999999777765445788887654433 222321 1334568999995 4545443
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=44.25 E-value=52 Score=26.18 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=25.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEecc
Q psy16881 129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLES 158 (222)
Q Consensus 129 ~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 158 (222)
.+..+++|+.+|.+.-.|.++++.+.++..
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 356899999999999999999999888754
No 332
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=43.77 E-value=1.1e+02 Score=23.60 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=40.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCceEEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEE
Q psy16881 118 TSAVTSVRFNHKSSLLVSGSVDKTVKLWDV--PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187 (222)
Q Consensus 118 ~~~i~~l~~~~~~~~l~sg~~dg~I~iwd~--~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lw 187 (222)
...+..+.+.+++.+++.+...+..+-+|- .+.+.+. ......+..+.+++++.+++.+ .+|.+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s 230 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFS 230 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEE-TTTEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEe-CCceEEEe
Confidence 446788889888887776654444444453 2333332 2344567888888888766443 45555554
No 333
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=43.71 E-value=1e+02 Score=25.88 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=42.9
Q ss_pred CEEEEEEcCC----CC--EEEEEeCCCcEE-EEeCCCC-------ceEEEecc--CCccEEEEEEcCCCCEEEEeeCCCe
Q psy16881 120 AVTSVRFNHK----SS--LLVSGSVDKTVK-LWDVPSL-------TCIKTLES--HTRYVTCCTFSCDDSLLASGSNDKT 183 (222)
Q Consensus 120 ~i~~l~~~~~----~~--~l~sg~~dg~I~-iwd~~~~-------~~~~~~~~--~~~~V~~~~~s~~~~~l~s~s~D~~ 183 (222)
..+.|+.+.. ++ .++.|+.+|.|. +.-.... ..+.++.. ...+|..+.++++...|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4566666532 43 688899999865 3332221 12334432 3467899999999999999998876
Q ss_pred EEE
Q psy16881 184 VTI 186 (222)
Q Consensus 184 i~l 186 (222)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 334
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=43.25 E-value=1e+02 Score=23.15 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCEEEEEeCC----CcEEEEeCCCCceEE--EeccCCccEEEEEEcCCCCEEEEeeCC------CeEEEEeCC
Q psy16881 129 KSSLLVSGSVD----KTVKLWDVPSLTCIK--TLESHTRYVTCCTFSCDDSLLASGSND------KTVTIWDML 190 (222)
Q Consensus 129 ~~~~l~sg~~d----g~I~iwd~~~~~~~~--~~~~~~~~V~~~~~s~~~~~l~s~s~D------~~i~lwd~~ 190 (222)
++.+++.|+.+ +.+.+||..+.+-.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 34556666644 567788887654322 22111111122222 56666667654 357778763
No 335
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=41.01 E-value=7.1 Score=19.42 Aligned_cols=7 Identities=43% Similarity=1.151 Sum_probs=4.4
Q ss_pred CCCCccC
Q psy16881 216 VPLNYCC 222 (222)
Q Consensus 216 ~~~~~~~ 222 (222)
.||+|||
T Consensus 15 ~~p~~cc 21 (37)
T 4aor_D 15 GPPEQCC 21 (37)
T ss_dssp SCGGGBT
T ss_pred CCccccc
Confidence 4567776
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=40.33 E-value=61 Score=28.19 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=45.2
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEeCCCC------ce-------EEEeccCCccEEEEEEcCCCCEEEEeeCCCeEEEEe
Q psy16881 123 SVRFNHKSSLLVSG-SVDKTVKLWDVPSL------TC-------IKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188 (222)
Q Consensus 123 ~l~~~~~~~~l~sg-~~dg~I~iwd~~~~------~~-------~~~~~~~~~~V~~~~~s~~~~~l~s~s~D~~i~lwd 188 (222)
.+..+|+|++++.+ -.+.++.++|++.. +. +.+.+.... ..-.+|+++|+...|---|.+|..|+
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG-PlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG-PLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC-EEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc-ccEEEECCCCceEeeeeecceEEEEe
Confidence 46788999975554 56889999998742 11 233333333 45678999995555566899999999
Q ss_pred C
Q psy16881 189 M 189 (222)
Q Consensus 189 ~ 189 (222)
+
T Consensus 406 i 406 (638)
T 3sbq_A 406 M 406 (638)
T ss_dssp H
T ss_pred c
Confidence 7
No 337
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=39.22 E-value=1.2e+02 Score=22.70 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=44.9
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCce--EEEeccCCccEEEEEEcCCCCEEEEeeCC-----CeEEEEeCC------
Q psy16881 129 KSSLLVSGSVD-----KTVKLWDVPSLTC--IKTLESHTRYVTCCTFSCDDSLLASGSND-----KTVTIWDML------ 190 (222)
Q Consensus 129 ~~~~l~sg~~d-----g~I~iwd~~~~~~--~~~~~~~~~~V~~~~~s~~~~~l~s~s~D-----~~i~lwd~~------ 190 (222)
+++.++.|+.+ +.+.+||..+.+- +.........-.++.+ ++.+++.|+.+ ..+..||+.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 45666667643 3578889876543 2222211111122222 56666777654 357788863
Q ss_pred -----------------CCeEEEeeCC-----CcEEEEeCCCC
Q psy16881 191 -----------------ATLLASGSND-----KTVTIWDMRGN 211 (222)
Q Consensus 191 -----------------~~~l~s~~~d-----~~i~iwd~~~~ 211 (222)
..+++.|+.+ ..+.+||+.+.
T Consensus 190 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 190 VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 2345666653 45888888743
No 338
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=38.90 E-value=1.9e+02 Score=25.00 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=40.6
Q ss_pred CCEEEEEEcCCCCEEEEEeC------------CCcEEEEeCCCCceEEEeccC-CccEEEEEEcCCCCEEEEee
Q psy16881 119 SAVTSVRFNHKSSLLVSGSV------------DKTVKLWDVPSLTCIKTLESH-TRYVTCCTFSCDDSLLASGS 179 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~~------------dg~I~iwd~~~~~~~~~~~~~-~~~V~~~~~s~~~~~l~s~s 179 (222)
.....|.|+++|.+.+.... .+.+..++..+++...-+.+. ...++-++|+||++.|+.+-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34567899999987773322 124555666666654434332 35689999999999888765
No 339
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=38.80 E-value=1.1e+02 Score=23.17 Aligned_cols=60 Identities=7% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCCEEEEEeC-C-----CcEEEEeCCCCceEE--EeccCCccEEEEEEcCCCCEEEEeeCCC-----eEEEEeCC
Q psy16881 129 KSSLLVSGSV-D-----KTVKLWDVPSLTCIK--TLESHTRYVTCCTFSCDDSLLASGSNDK-----TVTIWDML 190 (222)
Q Consensus 129 ~~~~l~sg~~-d-----g~I~iwd~~~~~~~~--~~~~~~~~V~~~~~s~~~~~l~s~s~D~-----~i~lwd~~ 190 (222)
++++++.|+. + +.+.+||..+.+-.. .+......-.++.+ ++++++.|+.++ .+..||+.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 4566777765 2 368889987654322 11111111122222 566777777554 47778863
No 340
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=37.03 E-value=2e+02 Score=24.73 Aligned_cols=69 Identities=1% Similarity=-0.109 Sum_probs=37.1
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEeccCCccEEEEEEcCCCCEEEEeeC--CCeEEEEeC
Q psy16881 121 VTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN--DKTVTIWDM 189 (222)
Q Consensus 121 i~~l~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s~s~--D~~i~lwd~ 189 (222)
...++++..++ ..++-+..+.|.+.++........+...-...+.++++|....|+.+-+ ...|...++
T Consensus 394 p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~ 465 (619)
T 3s94_A 394 PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAAL 465 (619)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEcc
Confidence 45677776554 4444455677888887643222222223345778888886444443322 244554444
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=34.60 E-value=1.7e+02 Score=23.19 Aligned_cols=53 Identities=17% Similarity=0.034 Sum_probs=36.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EEEe----ccCCccEEEEEEcCC
Q psy16881 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTC--IKTL----ESHTRYVTCCTFSCD 171 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l~sg~~dg~I~iwd~~~~~~--~~~~----~~~~~~V~~~~~s~~ 171 (222)
...+.++|.|+|.++++-...|.|++++..+++. +..+ .........++++|+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 3457899999999877776689999998655543 2222 122344678999985
No 342
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=31.19 E-value=1.7e+02 Score=22.05 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=32.6
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceEE--EeccCCccEEEEEEcCCCCEEEEeeCC-----CeEEEEeCC
Q psy16881 129 KSSLLVSGSVD-----KTVKLWDVPSLTCIK--TLESHTRYVTCCTFSCDDSLLASGSND-----KTVTIWDML 190 (222)
Q Consensus 129 ~~~~l~sg~~d-----g~I~iwd~~~~~~~~--~~~~~~~~V~~~~~s~~~~~l~s~s~D-----~~i~lwd~~ 190 (222)
++++++.|+.+ +.+.+||+.+.+-.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence 45667777654 458888987654322 11111111122222 56677777654 468888874
No 343
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=31.08 E-value=2.6e+02 Score=24.15 Aligned_cols=70 Identities=1% Similarity=0.020 Sum_probs=41.4
Q ss_pred CCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEe-ccCCccEEEEEEcCC-CCEEEEeeCCC--eEEEEeC
Q psy16881 119 SAVTSVRFNHKSSLL-VSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCD-DSLLASGSNDK--TVTIWDM 189 (222)
Q Consensus 119 ~~i~~l~~~~~~~~l-~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~V~~~~~s~~-~~~l~s~s~D~--~i~lwd~ 189 (222)
..+..++++..++.| .+-+..+.|.+.++. ++....+ ...-...+.++++|. |.+..+-.... .|...++
T Consensus 389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~ 463 (628)
T 4a0p_A 389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAAL 463 (628)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEET
T ss_pred CCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeC
Confidence 346788888876644 455567788888875 4443333 233455789999984 44444432222 4555444
No 344
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=31.00 E-value=1.3e+02 Score=25.67 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=42.4
Q ss_pred CEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCC----ceEEEec--cCCccEE-EEEEcCCCCEEEEeeCCCeEEE
Q psy16881 120 AVTSVRFNHKSS--LLVSGSVDKTVKLWDVPSL----TCIKTLE--SHTRYVT-CCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 120 ~i~~l~~~~~~~--~l~sg~~dg~I~iwd~~~~----~~~~~~~--~~~~~V~-~~~~s~~~~~l~s~s~D~~i~l 186 (222)
..+.++....++ .++.|+.+|.|.-..+... ....++. ....+|. .+.+++++..|+.++..+.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 456666554443 6888999998765444321 1233332 2245674 8889999999999988865555
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=29.75 E-value=1.8e+02 Score=21.95 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=30.2
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCceEEEeccCC-ccEEEEEEcCCCCEEEEeeC------CCeEEEEeCC
Q psy16881 129 KSSLLVSGSVD-------KTVKLWDVPSLTCIKTLESHT-RYVTCCTFSCDDSLLASGSN------DKTVTIWDML 190 (222)
Q Consensus 129 ~~~~l~sg~~d-------g~I~iwd~~~~~~~~~~~~~~-~~V~~~~~s~~~~~l~s~s~------D~~i~lwd~~ 190 (222)
++++++.|+.+ +.+.+||..+.+-...-.... ..-.+++. .++.+++.|+. -..+..||+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 45666666653 247778887654322111100 00011222 35666666653 1357888864
No 346
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=29.68 E-value=2.1e+02 Score=24.79 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=37.5
Q ss_pred EEEEEeCCCcEE-EEeCCCC----c-eEEEec--cCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881 132 LLVSGSVDKTVK-LWDVPSL----T-CIKTLE--SHTRYVTCCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 132 ~l~sg~~dg~I~-iwd~~~~----~-~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~D~~i~l 186 (222)
.++.|+.+|.|. +...... . .+.++. .....|..+.+++....|+.++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 688899999875 3333222 1 223343 24567889999999999999988876666
No 347
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=28.03 E-value=2.4e+02 Score=24.70 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=43.3
Q ss_pred CEEEEEEc----CCCC---EEEEEeCCCcEE-EEeCCCCc-eEEEec--cCCccEEEEEEcCCC--CEEEEeeCCCeEEE
Q psy16881 120 AVTSVRFN----HKSS---LLVSGSVDKTVK-LWDVPSLT-CIKTLE--SHTRYVTCCTFSCDD--SLLASGSNDKTVTI 186 (222)
Q Consensus 120 ~i~~l~~~----~~~~---~l~sg~~dg~I~-iwd~~~~~-~~~~~~--~~~~~V~~~~~s~~~--~~l~s~s~D~~i~l 186 (222)
..+.|+.+ .+++ .++.|+.+|.|. +-...... .+.++. ....+|..+.+++.. ..|+.++..+.+++
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 35566653 2333 688899999864 43444332 223322 234678889999888 89999998876666
No 348
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=27.21 E-value=2.1e+02 Score=25.19 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=37.3
Q ss_pred EEEEEeCCCcEE-EEeCCCCc-------eEEEec--cCCccEEEEEEcCCCCEEEEeeCCCeEEE
Q psy16881 132 LLVSGSVDKTVK-LWDVPSLT-------CIKTLE--SHTRYVTCCTFSCDDSLLASGSNDKTVTI 186 (222)
Q Consensus 132 ~l~sg~~dg~I~-iwd~~~~~-------~~~~~~--~~~~~V~~~~~s~~~~~l~s~s~D~~i~l 186 (222)
.++.|+.+|.|. +.-..... .+.++. ....+|..+.+++....|+.++.++.+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 688899999864 43222111 222322 34567889999999999999999887666
Done!