RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16881
(222 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 92.5 bits (228), Expect = 5e-23
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 13/174 (7%)
Query: 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
+R VR + D L+A+ +D+TV VW E + H I +
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203
Query: 88 RTRVFSTFVKQIIPTRVGVYGQDSE-------------TVGRHTSAVTSVRFNHKSSLLV 134
T + +D T+ H + V V F+ ++
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263
Query: 135 SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
S + DKT+++WD + C+KTL +H +VT F + +GS D+TV +W+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 67.1 bits (162), Expect = 7e-14
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 7/159 (4%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
V F P ++ + +D T+ VW + +GHT + +
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--KGHT-----DSVQDISFDHSGKL 73
Query: 91 VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
+ S I + T+ H V+SV +VS S DKT+K+W+V +
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
C+KT H +V + D +L+AS SND+TV +W +
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
Score = 58.2 bits (139), Expect = 9e-11
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC 170
H S VT V F+ S++VS S D T+K+WD + +TL+ HT V +F
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Score = 49.4 bits (116), Expect = 7e-08
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
K W P L H VT F S++ S S D T+ +WD
Sbjct: 1 KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 82.5 bits (202), Expect = 3e-19
Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 47/161 (29%)
Query: 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
S++ + F P+ ATG DD T ++ +M +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD------------------- 267
Query: 88 RTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
+TSV F+ LL++G D +WD
Sbjct: 268 ----------------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 148 PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
L H V+C + D +A+GS D + IW+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.2 bits (165), Expect = 3e-14
Identities = 45/242 (18%), Positives = 75/242 (30%), Gaps = 63/242 (26%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLI---------------------------- 62
+ + D+RLL + D + +W S + +
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118
Query: 63 ----------METNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSE 112
E N R + L ++ ++ GQ +
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
T HT V S+ + L VSG+ D + KLWDV C +T H + F +
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 173 SLLASGSNDKTVTIWDMLA-------------------------TLLASGSNDKTVTIWD 207
+ A+GS+D T ++D+ A LL +G +D +WD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 208 MR 209
Sbjct: 299 AL 300
Score = 67.1 bits (162), Expect = 8e-14
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY--VTCCTFSCDDSL 174
H S + ++ F + +GS D T +L+D+ + + T +T +FS L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 175 LASGSNDKTVTIWDMLA-----------------------TLLASGSNDKTVTIWD 207
L +G +D +WD L +A+GS D + IW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 52.8 bits (125), Expect = 6e-09
Identities = 16/73 (21%), Positives = 36/73 (49%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H + + ++ + S LLVS S D + +WD + + + + +V C ++ + +A
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 177 SGSNDKTVTIWDM 189
G D +I+++
Sbjct: 114 CGGLDNICSIYNL 126
Score = 42.8 bits (99), Expect = 1e-05
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ +TL H + + D LL S S D + IWD
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 75.6 bits (184), Expect = 1e-16
Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 43/165 (26%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
V F+ D + + +G D +V +W + + ++ +
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI------------ 305
Query: 91 VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
H V SV ++SGS D+ V WD S
Sbjct: 306 -------------------------GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340
Query: 151 TCIKTLESHTRYVTCC------TFSCDDSLLASGSNDKTVTIWDM 189
+ L+ H V + + ++ A+GS D IW
Sbjct: 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Score = 59.4 bits (142), Expect = 4e-11
Identities = 46/245 (18%), Positives = 83/245 (33%), Gaps = 49/245 (20%)
Query: 7 GDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN 66
D + + L S +R V FSPD + LATG +D + +W ++ ++M
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160
Query: 67 DRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRF 126
++ + + + GQ S T+ T
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGD-------RTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213
Query: 127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES-------HTRYVTCCTFSCDDSLLASGS 179
+ +GS+D+ V++WD + ++ L+S H V F+ D + SGS
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 180 NDKTVTIWDMLA-----------------------------------TLLASGSNDKTVT 204
D++V +W++ + SGS D+ V
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 205 IWDMR 209
WD +
Sbjct: 334 FWDKK 338
Score = 45.9 bits (107), Expect = 1e-06
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 12/191 (6%)
Query: 10 PSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETND-- 67
P+L ++ L S+ S + CV+FS D LATG + T V+R D SL+ +D
Sbjct: 45 PALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDS 103
Query: 68 ---------RGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHT 118
+ + + R + + ++I + + H
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163
Query: 119 SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASG 178
+ S+ + LVSGS D+TV++WD+ + C TL T D +A+G
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 223
Query: 179 SNDKTVTIWDM 189
S D+ V +WD
Sbjct: 224 SLDRAVRVWDS 234
Score = 40.9 bits (94), Expect = 6e-05
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 133 LVSGSVDKTVKLWD-----VPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIW 187
+ + L++ + K+L+ HT V C FS D LA+G +KT ++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVY 88
Query: 188 DM 189
+
Sbjct: 89 RV 90
Score = 34.0 bits (76), Expect = 0.011
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 21 RGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWR 55
R SV + P+ + ATG D +W+
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 73.3 bits (178), Expect = 4e-16
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H S V S++F + VS D + W P I + + V C S DD +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIV 322
Query: 177 SGSNDKTVTIWDML 190
+GS DK T+++++
Sbjct: 323 TGSGDKKATVYEVI 336
Score = 55.6 bits (132), Expect = 7e-10
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-----SHTRYVTCCTFSCD 171
H V +V ++ + + +G VK+WD+ + + Y+ C D
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 172 DSLLASGSNDKTVTIWDM 189
L G T++IWD+
Sbjct: 109 GCTLIVGGEASTLSIWDL 126
Score = 49.0 bits (115), Expect = 1e-07
Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 50/119 (42%)
Query: 29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCR 88
+ ++F+ + + G D + WR+ + I ++
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------------------- 303
Query: 89 TRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
+ +S+V S + +V+GS DK +++V
Sbjct: 304 ---------------------------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 42.1 bits (97), Expect = 2e-05
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
V D + I TL +H V T S + +G V +WD+
Sbjct: 24 QPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79
Score = 40.2 bits (92), Expect = 9e-05
Identities = 30/258 (11%), Positives = 60/258 (23%), Gaps = 59/258 (22%)
Query: 8 DGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETND 67
D N + + ++ + +R + PD L GG+ T+++W + ++
Sbjct: 78 DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137
Query: 68 RGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHT--------- 118
+ + + V T G
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 119 ---------------------------SAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLT 151
S + S+ + L G V++ V
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDML--------------------- 190
+ H V F+ S D + W
Sbjct: 258 KYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316
Query: 191 -ATLLASGSNDKTVTIWD 207
+ +GS DK T+++
Sbjct: 317 DDKYIVTGSGDKKATVYE 334
Score = 34.8 bits (78), Expect = 0.006
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDD---LSLIMETNDRGHT 71
G + V S TR + TGG V VW S + + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRD 97
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 70.7 bits (171), Expect = 5e-15
Identities = 9/75 (12%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS--LTCIKTLESHTRYVTCCTFSCDDSL 174
++ +N + + + V +++ + L+ H VT ++ D +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 175 LASGSNDKTVTIWDM 189
+ + D+ +W +
Sbjct: 66 IVTCGTDRNAYVWTL 80
Score = 46.8 bits (109), Expect = 6e-07
Identities = 15/140 (10%), Positives = 31/140 (22%), Gaps = 47/140 (33%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
C ++ D +A ++ V ++ + + H
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN------------------- 51
Query: 91 VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
VT V + S+ +V+ D+ +W +
Sbjct: 52 ----------------------------GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 83
Query: 151 TCIKTLESHTRYVTCCTFSC 170
T TL
Sbjct: 84 TWKPTLVILRINRAARCVRW 103
Score = 46.4 bits (108), Expect = 9e-07
Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 2/179 (1%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
V ++PD+ + T G D VW + T P
Sbjct: 55 TGVDWAPDSNRIVTCGTDRNAYVW-TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG 113
Query: 91 VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSL 150
S + + + S V S+ ++ S LL +GS D +++
Sbjct: 114 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMR 209
+ +S V + + +A S+D TV + D
Sbjct: 174 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-FSANGSRVAWVSHDSTVCLADAD 231
Score = 45.6 bits (106), Expect = 2e-06
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
+ V F ++ L+A G D V ++ D + + GR++ +
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPV-LFTYDSAAGKLSF------GGRLDVPKQSSQR 293
Query: 85 PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRF----NHKSSLLVSGSVDK 140
L F K+ G +++ H ++V+ + K S + +D
Sbjct: 294 GLTARERFQNLDKKASSEGSAAAGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTTGMDG 351
Query: 141 TVKLWDVPSL 150
+ +WDV SL
Sbjct: 352 GMSIWDVRSL 361
Score = 36.8 bits (83), Expect = 0.001
Identities = 24/189 (12%), Positives = 44/189 (23%), Gaps = 27/189 (14%)
Query: 47 DDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGV 106
E M + GW +RV +
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 107 YGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCC 166
T+ T + +V F +SSL+ +G D L+ S +
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQS 290
Query: 167 TFSCDDSLLASGSNDKTVTIWD--------------------------MLATLLASGSND 200
+ + + DK + + + D
Sbjct: 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 201 KTVTIWDMR 209
++IWD+R
Sbjct: 351 GGMSIWDVR 359
Score = 28.7 bits (62), Expect = 0.52
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 19/49 (38%)
Query: 163 VTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGN 211
++C ++ D T +A N+ V I++ GN
Sbjct: 10 ISCHAWNKDR-------------------TQIAICPNNHEVHIYEKSGN 39
Score = 27.9 bits (60), Expect = 1.1
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 31 RCVRFSPD----TRLLATGGDDETVTVWRSDDLSLIME 64
+ T G D +++W L ++
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 366
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 62.2 bits (149), Expect = 5e-12
Identities = 22/188 (11%), Positives = 46/188 (24%), Gaps = 17/188 (9%)
Query: 29 NMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT----QGRIEGWGRVPAC 84
+ F D++ L L+ E + G VP
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239
Query: 85 PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSL---LVSGSVDKT 141
+ + + V D + S++
Sbjct: 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299
Query: 142 VKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDK 201
+ +DV + + + +T S D + +D + + L +++
Sbjct: 300 LLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP-----LEKPEDER 350
Query: 202 TVTIWDMR 209
TV D R
Sbjct: 351 TVET-DKR 357
Score = 43.7 bits (101), Expect = 6e-06
Identities = 18/166 (10%), Positives = 31/166 (18%), Gaps = 5/166 (3%)
Query: 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDD----LSLIMETNDRGHTQGRIEGWGRVP 82
+R VR DT++ G E + D E G
Sbjct: 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV 101
Query: 83 ACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTV 142
+ ++ G V + +
Sbjct: 102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161
Query: 143 KLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
++D+ + F D L S D
Sbjct: 162 HVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206
Score = 33.7 bits (75), Expect = 0.015
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 26 IGSNMRCVRFSPDTRLLATGGDDETVTVWRSD 57
+ +N+ +R S D + + DD + + +
Sbjct: 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
Score = 30.2 bits (66), Expect = 0.18
Identities = 6/65 (9%), Positives = 16/65 (24%), Gaps = 2/65 (3%)
Query: 123 SVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDK 182
+ F+ L++ + DV +K + D + +
Sbjct: 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 183 TVTIW 187
+
Sbjct: 65 GDFLG 69
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 59.9 bits (143), Expect = 3e-11
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE---SHTRYVTCCTFSCDDS 173
++ ++ SLL+ S D ++ ++ L + + CC F +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 174 -LLASGSNDKTVTIWDM 189
+ G+ + D+
Sbjct: 70 LQIYVGTVQGEILKVDL 86
Score = 59.5 bits (142), Expect = 3e-11
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
V S+ F+ + L + D + W++ + IK + +C D++L
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILC 308
Query: 177 SGSNDKTVTIWDMLATLLASGSNDKTVTIWDM 208
++D T + + + I+D
Sbjct: 309 LATSDDTFKTNAAIDQTIE-LNASSIYIIFDY 339
Score = 47.9 bits (112), Expect = 3e-07
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ ++ ++ Y++ SLL S D ++T++
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40
Score = 37.1 bits (84), Expect = 0.001
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI 75
++ P LL D ++TV++ D + ++ + +
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Score = 36.4 bits (82), Expect = 0.002
Identities = 13/130 (10%), Positives = 25/130 (19%), Gaps = 37/130 (28%)
Query: 115 GRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLES---------------H 159
G + S+D V +
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250
Query: 160 TRYVTCCTFSCDDSLLASGSNDKTVTIWDM-----LATL-----------------LASG 197
V FS L + +D ++ W++ + L
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310
Query: 198 SNDKTVTIWD 207
++D T
Sbjct: 311 TSDDTFKTNA 320
Score = 32.1 bits (71), Expect = 0.040
Identities = 20/181 (11%), Positives = 39/181 (21%), Gaps = 5/181 (2%)
Query: 14 NGTELILRGSVHIGSNMRCVRFSPDT-RLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ 72
+ L S+ + C F +T + G + +
Sbjct: 43 QAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL 102
Query: 73 GRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSL 132
G + + V GV + + SS
Sbjct: 103 GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162
Query: 133 LVSGSVDKTVKLWDVPSLTCIKTLE----SHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
L+ G + V+ + +P + + A S D V +
Sbjct: 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222
Query: 189 M 189
Sbjct: 223 F 223
Score = 29.8 bits (65), Expect = 0.25
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 23 SVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSL 61
+ + V+ + +L D+T + D ++
Sbjct: 288 NFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTI 326
Score = 29.4 bits (64), Expect = 0.36
Identities = 16/144 (11%), Positives = 33/144 (22%), Gaps = 54/144 (37%)
Query: 20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWG 79
++ + + FSP + L T G D ++ W I
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-------------- 289
Query: 80 RVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVD 139
+ + V+ ++L + D
Sbjct: 290 ------------------------------------AKFNEDSVVKIACSDNILCLATSD 313
Query: 140 KTVKLWDVPSLTCIKTLESHTRYV 163
T K +T+E + +
Sbjct: 314 DTFKTNAA----IDQTIELNASSI 333
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 59.5 bits (142), Expect = 3e-11
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRY-VTCCTFSCDDSLLASGSNDKTV 184
++ + + S S DKT+K+W+V +L KT+ TR L S S + +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305
Query: 185 TIWDM 189
+
Sbjct: 306 NFVNP 310
Score = 51.8 bits (122), Expect = 1e-08
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180
+ + + +V V SLT + H+ T S ASG
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 181 DKTVTIWDM 189
V IWD
Sbjct: 79 HGNVRIWDT 87
Score = 36.4 bits (82), Expect = 0.002
Identities = 47/249 (18%), Positives = 74/249 (29%), Gaps = 71/249 (28%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH-------------------- 70
+ SP A+G V +W + + I++T
Sbjct: 62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 121
Query: 71 --------------------TQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQD 110
G+ V P R+ S + G +
Sbjct: 122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 181
Query: 111 SETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKT-------LESHTRYV 163
T G HT V SVR+N SL S D T+ L++ T +H+ V
Sbjct: 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 241
Query: 164 TCCTFSCDDSLLASGSNDKTVTIWDM-----LATL-------------------LASGSN 199
T+S D + +AS S DKT+ IW++ T+ L S S
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301
Query: 200 DKTVTIWDM 208
+ + +
Sbjct: 302 NGFINFVNP 310
Score = 31.0 bits (68), Expect = 0.087
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW 145
D+E H+ T + + SG V V++W
Sbjct: 48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85
Score = 27.2 bits (58), Expect = 1.8
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI 62
++ + +SPD +A+ D+T+ +W L +
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273
Score = 26.8 bits (57), Expect = 2.2
Identities = 2/41 (4%), Positives = 11/41 (26%)
Query: 17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSD 57
++ V + + + L + + + +
Sbjct: 271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 57.5 bits (137), Expect = 2e-10
Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 17/171 (9%)
Query: 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPL 86
G R D + +G D ++ VW + + I +E +
Sbjct: 175 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 234
Query: 87 CRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWD 146
+ V I + G Q + +H SAVT ++FN + +++ S D TVKLWD
Sbjct: 235 ADSTVK------IWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWD 286
Query: 147 VPSLTCIKTLES-----HTRYVTCCTFSCDDSLLASGSNDKT----VTIWD 188
+ + I+ L + V S + A GS + T + + D
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
Score = 54.8 bits (130), Expect = 1e-09
Identities = 53/256 (20%), Positives = 84/256 (32%), Gaps = 60/256 (23%)
Query: 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI---------------- 62
+L+G H + C + +G DD T+ VW + +
Sbjct: 11 VLKG--HDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Query: 63 ---------------METNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVY 107
V L RV S +
Sbjct: 67 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126
Query: 108 GQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCT 167
GQ + H +AV V+++ + +VSG+ D VK+WD + TC+ TL+ HT V
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 184
Query: 168 FSCDDSLLASGSNDKTVTIWDMLA---------------------TLLASGSNDKTVTIW 206
F D + SGS D ++ +WD+ +L SG+ D TV IW
Sbjct: 185 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242
Query: 207 DMRGNLSVDVPLNYCC 222
D++ +
Sbjct: 243 DIKTGQCLQTLQGPNK 258
Score = 51.7 bits (122), Expect = 2e-08
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 145 WDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
W L K L+ H +V C + + SGS+D T+ +W
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSA 44
Score = 48.7 bits (114), Expect = 2e-07
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 26/108 (24%)
Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT 185
+VSGS+D ++++WDV + CI TL H + D++L SG+ D TV
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVK 240
Query: 186 IWDMLA------------------------TLLASGSNDKTVTIWDMR 209
IWD+ + + S+D TV +WD++
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
Score = 28.2 bits (61), Expect = 0.90
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTV 53
L+ S G + +R S + A G + T
Sbjct: 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 57.2 bits (136), Expect = 2e-10
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC---DDSLLASGSNDK 182
S + D T+++WDV + C++ + + + + S S D
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 183 TVTIWDM 189
T+ +++
Sbjct: 319 TLNFYEL 325
Score = 34.9 bits (78), Expect = 0.005
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 115 GRHTSAVTSVRF--NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD 172
G +S VT+V+F S L SG V +W ++E + +
Sbjct: 60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119
Query: 173 SLLASGSNDKTVTIWDM 189
+ + + +
Sbjct: 120 DISWDFEGRRLCVVGEG 136
Score = 34.5 bits (77), Expect = 0.008
Identities = 28/211 (13%), Positives = 48/211 (22%), Gaps = 31/211 (14%)
Query: 28 SNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLC 87
+ + + + R L G+ S GH+Q +
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175
Query: 88 RTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLW-- 145
T V D S V V F+ S V
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHK-QGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234
Query: 146 --DVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA------------ 191
L I+ + + D A+ D T+ +WD+
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 192 --------------TLLASGSNDKTVTIWDM 208
+ S S D T+ +++
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 31.8 bits (70), Expect = 0.048
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 21/99 (21%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKT-VKLWDV--PSLTCIKTLESH-TRYVTCCTFSCDD 172
+ T + ++ ++ + V+ D + + H + VT FS
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 173 SLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGN 211
+ L SG V +W +
Sbjct: 76 G-----------------SQYLCSGDESGKVIVWGWTFD 97
Score = 31.4 bits (69), Expect = 0.080
Identities = 28/221 (12%), Positives = 52/221 (23%), Gaps = 36/221 (16%)
Query: 25 HIGSNMRCVRFSP--DTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEG----- 77
H S + V+FSP ++ L +G + V VW ++ ++
Sbjct: 61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120
Query: 78 --WGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVS 135
W F I G+ S R + +S +
Sbjct: 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 180
Query: 136 GSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVT---------- 185
+ +T +V FS D
Sbjct: 181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 240
Query: 186 -----------------IWDMLATLLASGSNDKTVTIWDMR 209
+ + + A+ D T+ +WD+
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 281
Score = 27.2 bits (58), Expect = 1.5
Identities = 14/124 (11%), Positives = 29/124 (23%), Gaps = 48/124 (38%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
D++ AT G D T+ VW + +
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW------------------- 289
Query: 85 PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVK 143
T+ + V + ++S S+D T+
Sbjct: 290 ----------------------------TLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321
Query: 144 LWDV 147
+++
Sbjct: 322 FYEL 325
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 56.8 bits (135), Expect = 2e-10
Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 25/130 (19%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H ++V + + + +++G+ DK ++++D + + L H V ++ L++
Sbjct: 11 HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69
Query: 177 SG------------------------SNDKTVTIWDMLATLLASGSNDKTVTIWDMRGNL 212
+ + + +GS D T+ +W +
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 213 SVDVPLNYCC 222
SV
Sbjct: 130 SVPDHGEEHD 139
Score = 53.7 bits (127), Expect = 3e-09
Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 3/136 (2%)
Query: 54 WRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSET 113
S D ++ + + G ++G + + + +
Sbjct: 218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 277
Query: 114 VGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIK-TLESHTRYVTCCTFSCDD 172
HT+ F ++LVSGS + ++++ S + + + F
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GK 335
Query: 173 SLLASGSNDKTVTIWD 188
+L+A+ D +
Sbjct: 336 TLVAAVEKDGQSFLEI 351
Score = 44.1 bits (102), Expect = 6e-06
Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 18/195 (9%)
Query: 20 LRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWG 79
LRG H+ S + C + + TG DD+ + V+ S + +++ GH G
Sbjct: 8 LRG--HMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQL--SGHD-------G 54
Query: 80 RVPACPLCRTRVF---STFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSG 136
V A + ST + T + +V+G
Sbjct: 55 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114
Query: 137 SVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS--LLASGSNDKTVTIWDMLATLL 194
S D T+ +W +P + + Y ++ + + +V ++
Sbjct: 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 174
Query: 195 ASGSNDKTVTIWDMR 209
SGS D T+ +WD+
Sbjct: 175 VSGSYDNTLIVWDVA 189
Score = 41.0 bits (94), Expect = 6e-05
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 155 TLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
TL H V C +D+ + +G++DK + ++D
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDS 40
Score = 31.8 bits (70), Expect = 0.061
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 24/72 (33%)
Query: 159 HTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA-----------------------TLLA 195
HT TF D++L SGS + I+++ + TL+A
Sbjct: 281 HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339
Query: 196 SGSNDKTVTIWD 207
+ D +
Sbjct: 340 AVEKDGQSFLEI 351
Score = 26.8 bits (57), Expect = 2.1
Identities = 12/122 (9%), Positives = 25/122 (20%), Gaps = 50/122 (40%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
H + F +L +G ++ ++ L+
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANIL----------------- 321
Query: 85 PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKL 144
+ + SV F K +L+ + D L
Sbjct: 322 -------------------------------KDADQIWSVNFKGK-TLVAAVEKDGQSFL 349
Query: 145 WD 146
Sbjct: 350 EI 351
Score = 26.0 bits (55), Expect = 4.4
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 17 ELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSD 57
+L+ + + V F T L+A D + D
Sbjct: 314 KLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 56.4 bits (134), Expect = 5e-10
Identities = 32/211 (15%), Positives = 54/211 (25%), Gaps = 28/211 (13%)
Query: 27 GSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRG---------------HT 71
V S L+ATG ++ TV + L + +
Sbjct: 184 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 72 QGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSS 131
+ + + + Q S H+S V S+ FN
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYV----TCCTFSCDDSLLASGSNDKTVTIW 187
L S D ++ WDV + I TL H + LA +
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362
Query: 188 DMLAT--------LLASGSNDKTVTIWDMRG 210
+ L D+++ + G
Sbjct: 363 KGWRSGMGADLNESLCCVCLDRSIRWFREAG 393
Score = 52.9 bits (125), Expect = 7e-09
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H + + SV + VS S D +K+WD K L++ + S L
Sbjct: 13 HDADIFSVSACNS--FTVSCSGDGYLKVWD------NKLLDNENPKDKSYSHFVHKSGLH 64
Query: 177 SGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGN 211
+ + L+A+ S + + +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99
Score = 39.8 bits (91), Expect = 2e-04
Identities = 15/182 (8%), Positives = 35/182 (19%), Gaps = 44/182 (24%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPACPLCRTR 90
V + D + VW D L+ N + + +
Sbjct: 18 FSVSACNSF--TVSCSGDGYLKVW---DNKLLDNENPKDKSYSHFVHKSGL--------- 63
Query: 91 VFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPS 149
H + ++ + + L+ + S + + +
Sbjct: 64 -------------------------HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 98
Query: 150 LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMR 209
K + + + L + T IW
Sbjct: 99 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR----LVATDVKGTTYIWKFH 154
Query: 210 GN 211
Sbjct: 155 PF 156
Score = 38.3 bits (87), Expect = 5e-04
Identities = 19/183 (10%), Positives = 56/183 (30%), Gaps = 18/183 (9%)
Query: 8 DGPSLFNGTELILRGSVHIGSNMRCV-RFSPDTRLLATGGDDETVTVWRSDDLSLIMETN 66
+ P + + + + +H ++ + R + + L+AT + +R
Sbjct: 47 ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR---------IT 97
Query: 67 DRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRF 126
T+ I + + + ++ + T +
Sbjct: 98 REDETKKVIFEKLDLLDSDMKKHSFWA-------LKWGASNDRLLSHRLVATDVKGTTYI 150
Query: 127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI 186
+ + +++ + +++ T S + L+A+G N+ TV I
Sbjct: 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERGLIATGFNNGTVQI 209
Query: 187 WDM 189
++
Sbjct: 210 SEL 212
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 55.0 bits (130), Expect = 1e-09
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTL-ESHTRYVTCCTFSCDDSLL 175
H A+T++ + L S + + WD+ + + + H +T + L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 176 ASGSNDKTVTIWD 188
+D +
Sbjct: 71 TVSWDDHLKVVPA 83
Score = 51.9 bits (122), Expect = 1e-08
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 134 VSGSVDKTVKLWDV--PSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+GS+D +V +W++ PS I +H +++ + S D + W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 47.3 bits (110), Expect = 3e-07
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 151 TCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ + H + +T + S D L S + + WD+
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
Score = 37.7 bits (85), Expect = 6e-04
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 113 TVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVP 148
G H + + + +VS D +K W+VP
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
Score = 35.3 bits (79), Expect = 0.004
Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 1/43 (2%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG 73
+ S D + L + + + W D H
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATM 57
Score = 28.8 bits (62), Expect = 0.52
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 19 ILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWR 55
I+ H S++ V + + + G D + W
Sbjct: 261 IIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWN 296
Score = 28.4 bits (61), Expect = 0.77
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 25/74 (33%)
Query: 159 HTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA-------------------------TL 193
HT V C ++S D+ LA+GS D +V +W+M T
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282
Query: 194 LASGSNDKTVTIWD 207
+ S D + W+
Sbjct: 283 IVSAGQDSNIKFWN 296
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 54.9 bits (130), Expect = 1e-09
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC 170
+ V ++++ +VSG D T+K+WD +L C + L HT V C +
Sbjct: 14 TSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Score = 52.9 bits (125), Expect = 5e-09
Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 22/173 (12%)
Query: 25 HIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPAC 84
+G D + + + D T+ VW + + N ++ R+
Sbjct: 134 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS 193
Query: 85 PLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKL 144
+ R+ + + +VSG+ D +K+
Sbjct: 194 GSSDNTI-----------RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242
Query: 145 WDVPS---------LTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
WD+ + C++TL H+ V F D+ + S S+D T+ IWD
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 50.2 bits (118), Expect = 3e-08
Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 2/123 (1%)
Query: 24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
G RL+ +G D T+ +W + + + I +
Sbjct: 173 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 232
Query: 84 CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVK 143
++ + + R T+ H+ V ++F+ +VS S D T+
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTIL 290
Query: 144 LWD 146
+WD
Sbjct: 291 IWD 293
Score = 49.8 bits (117), Expect = 6e-08
Identities = 42/243 (17%), Positives = 72/243 (29%), Gaps = 59/243 (24%)
Query: 35 FSPDTRLLATGGDDETVTVWRSDDLSLI-------------------------------- 62
D + + +G D T+ +W + L
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 63 --METNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSA 120
E + + + H +A
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140
Query: 121 VTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSN 180
V V F+ K +VS S D+T+K+W+ + ++TL H R + C + D L+ SGS+
Sbjct: 141 VNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS 196
Query: 181 DKTVTIWD---------------------MLATLLASGSNDKTVTIWDMRGNLSVDVPLN 219
D T+ +WD + SG+ D + +WD+ L P
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256
Query: 220 YCC 222
C
Sbjct: 257 TLC 259
Score = 43.3 bits (100), Expect = 9e-06
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 149 SLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
SL I ++ V C DD + SG D T+ IWD
Sbjct: 4 SLQRIHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDK 42
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 53.4 bits (126), Expect = 3e-09
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPS-LTCIKTLESHTRYVTCCTFSCDDSLL 175
+ + + L+ +GS+D + ++ V + IK L +H V + S L
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTL 272
Query: 176 ASGSNDKTVTIWDML 190
S D + W+++
Sbjct: 273 VSSGADACIKRWNVV 287
Score = 45.3 bits (105), Expect = 2e-06
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 117 HTSAVTSVRFNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLA 176
H +T++ N L+SGS D + W S + H+ + S +
Sbjct: 12 HNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSS 62
Query: 177 SGSNDKTVTIWDM 189
+D
Sbjct: 63 ISWDDTLKVNGIT 75
Score = 36.9 bits (83), Expect = 0.001
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 112 ETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
+ + H V ++ + S LVS D +K W+V
Sbjct: 252 KALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWNV 286
Score = 33.0 bits (73), Expect = 0.021
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 23/62 (37%)
Query: 152 CIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDMRGN 211
+KT+ H + +T T + L SGS D + W
Sbjct: 5 VLKTISGHNKGITALTVN-----------------------PLISGSYDGRIMEWSSSSM 41
Query: 212 LS 213
Sbjct: 42 HQ 43
Score = 28.0 bits (60), Expect = 0.97
Identities = 4/25 (16%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWR 55
+ + + L + G D + W
Sbjct: 262 NNLLWETPST-LVSSGADACIKRWN 285
Score = 25.7 bits (54), Expect = 4.8
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 11/41 (26%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHT 71
+ +P L +G D + W + + H+
Sbjct: 17 TALTVNP----LISGSYDGRIMEWS-------SSSMHQDHS 46
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 51.3 bits (121), Expect = 2e-08
Identities = 15/165 (9%), Positives = 41/165 (24%), Gaps = 4/165 (2%)
Query: 24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
G ++ + +A + + + D+ H + R
Sbjct: 159 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 218
Query: 84 CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVK 143
+ + + + + ++ T + + K + G +
Sbjct: 219 DK--QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLA 275
Query: 144 LWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
+D+ IK C F L G + +++
Sbjct: 276 KYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319
Score = 44.0 bits (102), Expect = 6e-06
Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 16/130 (12%)
Query: 32 CVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG----RIEGWGRVPACPLC 87
RF D + AT + R L
Sbjct: 213 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN 272
Query: 88 RTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVKLWDV 147
R + +++I V F+ K L G + +++
Sbjct: 273 RLAKYDLKQRKLIKAA------------NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320
Query: 148 PSLTCIKTLE 157
+L +K ++
Sbjct: 321 DTLEKVKNIK 330
Score = 39.7 bits (91), Expect = 1e-04
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 126 FNHKSSLLVSGSVDKTVKLWDVPSLTCIKTLE-SHTRYVTCCTFSCDDS-LLASGSNDKT 183
++ + + + DV S T K+ + D+ ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 184 VTIWDM 189
+ D+
Sbjct: 64 IYGIDL 69
Score = 37.0 bits (84), Expect = 0.001
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 11 SLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLI 62
+ ++ + L + ++ CV F L GG + V+ D L +
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
Score = 31.6 bits (70), Expect = 0.062
Identities = 15/171 (8%), Positives = 37/171 (21%), Gaps = 17/171 (9%)
Query: 35 FSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQ---------GRI-----EGWGR 80
+ + V ++ R +G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 81 VPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK 140
+ L + +P VG + V + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSF-AISPDGKEVYATVNPTQRLNDHYVVKPP 122
Query: 141 TVKLWDVPSLTCIKTLESHT--RYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
++++ K + + R V + D SL +G + + +
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG 173
Score = 27.8 bits (60), Expect = 1.2
Identities = 6/99 (6%), Positives = 18/99 (18%), Gaps = 14/99 (14%)
Query: 117 HTSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTL------ESHTRYVTCCTFS 169
+ + V + + D+ + R + S
Sbjct: 38 DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97
Query: 170 CDDSLLASGSNDKTVTIWDMLATLLASGSNDKTVTIWDM 208
D + + N + ++
Sbjct: 98 PDGKEVYATVNPTQRLNDH-------YVVKPPRLEVFST 129
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 49.4 bits (116), Expect = 8e-08
Identities = 23/202 (11%), Positives = 45/202 (22%), Gaps = 14/202 (6%)
Query: 1 MHEFPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLS 60
H +L++ L R + + + ++ D L G D V + L
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
Query: 61 LIMETNDRGHTQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGR---H 117
V + + F +
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227
Query: 118 TSAVTSVRFNHKSSLLVSGSV----------DKTVKLWDVPSLTCIKTLESHTRYVTCCT 167
T + S +V ++ +D+ IK +
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVN 286
Query: 168 FSCDDSLLASGSNDKTVTIWDM 189
S D S + G + +D
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDA 308
Score = 40.9 bits (94), Expect = 6e-05
Identities = 4/61 (6%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCD-DSLLASGSNDKTVTIWD 188
+++ + + + D + K + + A+ + +++ D
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 189 M 189
+
Sbjct: 63 L 63
Score = 39.4 bits (90), Expect = 2e-04
Identities = 10/144 (6%), Positives = 29/144 (20%), Gaps = 9/144 (6%)
Query: 14 NGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQG 73
+ + + D + + + M +
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-----VRI 238
Query: 74 RIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLL 133
+ P + V + + + SV + S +
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTV 294
Query: 134 VSGSVDKTVKLWDVPSLTCIKTLE 157
G + +D +L ++
Sbjct: 295 WLGGALGDLAAYDAETLEKKGQVD 318
Score = 36.3 bits (82), Expect = 0.002
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 4 FPMGDGPSLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIM 63
F + F+ + V + + V S D + GG + + ++ L
Sbjct: 256 FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315
Query: 64 ETNDRGHTQGRIEGWGRV 81
+ + G+ + R+
Sbjct: 316 QVDLPGNASMSL-ASVRL 332
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 42.5 bits (98), Expect = 2e-05
Identities = 21/198 (10%), Positives = 40/198 (20%), Gaps = 29/198 (14%)
Query: 23 SVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVP 82
+ + D L E ++ + H + V
Sbjct: 152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW 211
Query: 83 ACPLCRTRVFSTFVKQIIPTR-----------VGVYGQDSETVGRHTSAVTSVRFNHKSS 131
+ G + V H + +
Sbjct: 212 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 271
Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA 191
+ + V + D + + E + S D+ L
Sbjct: 272 EWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPL---------------- 314
Query: 192 TLLASGSNDKTVTIWDMR 209
L A + DKT+ I D
Sbjct: 315 -LYALSTGDKTLYIHDAE 331
Score = 42.1 bits (97), Expect = 3e-05
Identities = 17/153 (11%), Positives = 35/153 (22%), Gaps = 16/153 (10%)
Query: 33 VRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRI-EGWGRVPACPLCRTRV 91
+S L + T+ +GW + R
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259
Query: 92 FSTFVKQIIPTRVGVYGQDSETVG-------------RHTSAVTSVRFNH--KSSLLVSG 136
+ + S V + S+ + K L
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319
Query: 137 SVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS 169
+ DKT+ + D S ++++ T +
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 41.4 bits (95), Expect = 3e-05
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 134 VSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS-LLASGSNDKTVTIWDM 189
++ S + + DV S T+ + S D + + + ++ V+I D
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDT 61
Score = 35.6 bits (80), Expect = 0.003
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 117 HTSAVTSVRFNHKSS-LLVSGSVDKTVKLWDVPSLTCIKTLE 157
+ + V+ S TV + D + T T+
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
Score = 35.2 bits (79), Expect = 0.004
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 20 LRGSVHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLI 62
+ + +G + + +PD ++ TV+V + ++
Sbjct: 236 ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279
Score = 27.5 bits (59), Expect = 1.2
Identities = 8/69 (11%), Positives = 16/69 (23%), Gaps = 19/69 (27%)
Query: 141 TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSND 200
TV + D + + + D + + S
Sbjct: 225 TVSMIDTGTNKITARIPVGPD-PAGIAVTPDGK------------------KVYVALSFC 265
Query: 201 KTVTIWDMR 209
TV++ D
Sbjct: 266 NTVSVIDTA 274
Score = 25.2 bits (53), Expect = 6.3
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 119 SAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSC 170
S + + + V+ + V + D + I T+ + +
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD 84
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 39.4 bits (91), Expect = 2e-04
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTI 186
+ ++ V+ + L D + L++ V S L D V +
Sbjct: 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNM 87
Query: 187 WDM 189
D+
Sbjct: 88 IDL 90
Score = 37.5 bits (86), Expect = 8e-04
Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 18/192 (9%)
Query: 11 SLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH 70
+L +G+ ++ + G + R S R L G D V + +
Sbjct: 45 ALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-- 102
Query: 71 TQGRIEGWGRVPACPLCRTRVFST-------------FVKQIIPTRVGVYGQDSETVGRH 117
+ ++ D +
Sbjct: 103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-P 161
Query: 118 TSAVTSVRFNH-KSSLLVSGSVDKTVKLWDVPSLTCIKTLESHT-RYVTCCTFSCDDSLL 175
V ++ +H + +V+ + L D L +KT E R++
Sbjct: 162 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 221
Query: 176 ASGSNDKTVTIW 187
+ +N + +
Sbjct: 222 ITAANARNKLVV 233
Score = 34.8 bits (79), Expect = 0.006
Identities = 14/165 (8%), Positives = 32/165 (19%), Gaps = 11/165 (6%)
Query: 24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
+ + R T + V ++ D G
Sbjct: 203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262
Query: 84 CPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKTVK 143
S + + G D E + + L + +
Sbjct: 263 PTFGPVWATSHMGDDSVA----LIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 318
Query: 144 LWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWD 188
L+ +L + ++ D + +D
Sbjct: 319 LYVDATL-------NPEAEISGSVAVFDIKAMTGDGSDPEFKTLP 356
Score = 25.5 bits (55), Expect = 6.6
Identities = 30/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%)
Query: 22 GSVHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGR 80
H + + S + + + + DL+ + T + + G
Sbjct: 157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT--EISAERFLHDGGL 214
Query: 81 VPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDK 140
+ T + +I T+ G +T G+ F H + G V
Sbjct: 215 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF----GPVWA 270
Query: 141 TVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLLASGSND 200
T + D S+ I T W +L + A G
Sbjct: 271 TSHMGD-DSVALIGT----------------------DPEGHPDNAWKILDSFPALGGGS 307
Query: 201 KTVTIWDMRGNLSVDVPLN 219
+ L VD LN
Sbjct: 308 LFIKTHPNSQYLYVDATLN 326
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 37.5 bits (85), Expect = 7e-04
Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 129 KSSLLVSGSVDKTVKLWDVPSLTCIKTLE--SHTRYVTCCTFSCDDSLL-ASGSNDKTVT 185
K ++ ++ + + +W++ + + V S D L + V
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62
Query: 186 IWDM 189
+ +
Sbjct: 63 AYRI 66
Score = 34.4 bits (77), Expect = 0.008
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 14 NGTELILRGSVHIGSNMRCVRFSPD-TRLLATGGDDETVTVWRSD 57
+G+ L G + R L+A G ++V+
Sbjct: 262 DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 36.9 bits (84), Expect = 0.001
Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 13/89 (14%)
Query: 127 NHKSSLLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFS------CDDS--LLASG 178
+ + G V+++D + I +E C S LL
Sbjct: 83 STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142
Query: 179 SNDKTVTIWDMLATLLASGSNDKTVTIWD 207
+ S+D+
Sbjct: 143 FGSSAAAGLS-----VPGASDDQLTKSAS 166
Score = 34.6 bits (78), Expect = 0.008
Identities = 7/140 (5%), Positives = 30/140 (21%), Gaps = 13/140 (9%)
Query: 31 RCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETN---DRGHTQGRIEGWGRVPACPLC 87
+ + + L+ + ++ + ++ A
Sbjct: 215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274
Query: 88 RTRVFSTFVKQII-----PTRVGVYGQDSETVGR---HTSAVTSVRFNH--KSSLLVSGS 137
+ V+ + ++ S + +
Sbjct: 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA 334
Query: 138 VDKTVKLWDVPSLTCIKTLE 157
+ + ++D S ++E
Sbjct: 335 GTEVLDIYDAASDQDQSSVE 354
Score = 25.7 bits (55), Expect = 5.8
Identities = 7/77 (9%), Positives = 15/77 (19%), Gaps = 11/77 (14%)
Query: 135 SGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLATLL 194
+ + + SL +G + +
Sbjct: 41 YFAGTTENWVSCAGCGVTLGHSLGAF-----------LSLAVAGHSGSDFALASTSFARS 89
Query: 195 ASGSNDKTVTIWDMRGN 211
A G V ++D
Sbjct: 90 AKGKRTDYVEVFDPVTF 106
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 35.3 bits (80), Expect = 0.004
Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%)
Query: 11 SLFNGTELILRGSVHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGH 70
+L +G + + G + R S R L G D + + +
Sbjct: 45 ALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104
Query: 71 TQGRIEGWGRVPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS 130
+ R R + + G + + V V + ++ +
Sbjct: 105 IEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163
Query: 131 SL-LVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDM 189
+ + S + + +V + + T LA G D + +
Sbjct: 164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223
Score = 26.8 bits (58), Expect = 2.4
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 27 GSNMRCVRFSPDTRLLA-------TGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWG 79
G ++ P + L ++V V+ +L + EG
Sbjct: 303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK 362
Query: 80 RV 81
RV
Sbjct: 363 RV 364
Score = 26.1 bits (56), Expect = 4.2
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 159 HTRYVTCCTFSCDDSLLASGSNDKTV--TIWDMLATLLASGSNDKTVTIWDMRGNLSVDV 216
V + D S+ G++ K W +A L G + +L VD
Sbjct: 263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 322
Query: 217 PLN 219
N
Sbjct: 323 TFN 325
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 35.0 bits (79), Expect = 0.005
Identities = 16/173 (9%), Positives = 29/173 (16%), Gaps = 35/173 (20%)
Query: 23 SVHIGSNMRCVRFSPD--TRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGR 80
I + + V T R
Sbjct: 157 DAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWR 216
Query: 81 VPACPLCRTRVFSTFVKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKS---SLLVSGS 137
P + ++ + +HK + V
Sbjct: 217 --------------------PGGMQQTAVQAKQNRYYVLMHKGTDGSHKDPGTQVWVYDL 256
Query: 138 VDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDD--SLLASGSNDKTVTIWD 188
K + ++ L S S DD + V + D
Sbjct: 257 KSKQRVARWDLAQQKVEPLVS-------IQVSEDDKPLFYGLTATSDLV-VMD 301
Score = 27.6 bits (60), Expect = 1.2
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDS--LLASGSNDKTVTIWD 188
L ++ + + +++ E T C A + K +T+
Sbjct: 88 RLYVANITPAASVTVIDAVSKKMLSEIDT--AACVLAYPAGDDRFTALCESGKALTVTL 144
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 33.3 bits (76), Expect = 0.021
Identities = 22/199 (11%), Positives = 46/199 (23%), Gaps = 28/199 (14%)
Query: 24 VHIGSNMRCVRFSPDTRLLATGGDDETVTVWRSDDLSLIMETNDRGHTQGRIEGWGRVPA 83
V + N+ + T + S+ + T + R+ A
Sbjct: 172 VIVDGNLDNTDADYTGKYAT-------STCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224
Query: 84 C-PLCRTRVFSTF-VKQIIPTRVGVYGQDSETVGRHTSAVTSVRFNHKSSLLVSGSVDKT 141
+ V + + + TS + + +G + T
Sbjct: 225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKY---FIANGKLSPT 281
Query: 142 VKLWDVPSLTCIKTLESHTRYVTC-------------CTFSCDDSLLASGSNDKTVTIWD 188
V + + L E TF + + D V W+
Sbjct: 282 VSVIAIDKL--DDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN 339
Query: 189 MLATLLASGSNDKTVTIWD 207
+ + D+ I
Sbjct: 340 IADAIKHYNG-DRVNYIRQ 357
Score = 27.2 bits (60), Expect = 1.8
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 132 LLVSGSVDKTVKLWDVPSLTCIKTLESHTRYVTCCTFSCDDSLLASGSNDKTVTIWDMLA 191
SG V++ VPS+ + + DS G +++ I
Sbjct: 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNV----------DSATGWGITNESKEILGGDQ 62
Query: 192 TLLA 195
L
Sbjct: 63 QYLN 66
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 27.5 bits (60), Expect = 1.4
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 27 GSNMRCVRFSPDT--RLLATGGDDETVTVWRSDDLSL 61
G + V P + + T + + ++R D L
Sbjct: 308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 27.4 bits (59), Expect = 1.7
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 111 SETVGRHTSAVTSVRFNHKSSLLV---SGSVDKTVKLWDVPSLTCIKTLESHTR 161
S + SV F+ ++ SG L + ++ LE ++
Sbjct: 408 SCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSA 461
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 26.6 bits (57), Expect = 2.1
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 187 WDMLATLLASGSNDKTVTIWDMRGNLSVDVPLNY 220
+ L + VT+ D+ PL
Sbjct: 18 FRHLLEYINETHPGTVVTVLDLFDGRESLRPLWE 51
>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 304
Score = 25.9 bits (56), Expect = 4.1
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 52 TVWRSDDLSLIMETNDR-----GHTQGRIEGWGRVPACPLCRTRVFS-TFVKQIIPT 102
++ D +L+ DR + I G + L + F F+ +
Sbjct: 21 DIYEVDAGTLLFVATDRISAYDVIMENSIPEKGIL----LTKLSEFWFKFLSNDVRN 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.424
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 798,752
Number of extensions: 33370
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 163
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.4 bits)