BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16882
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 60
MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT
Sbjct: 23 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK
Sbjct: 83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 302 RTIACPHKGCSKMFRDN 318
RTIACPHKGC+KMFRDN
Sbjct: 4 RTIACPHKGCTKMFRDN 20
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H TH G + + C ECGK+F + L RHQ HTGEKP++C CGK FS NLR
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP--ECGKSFSQRANLR 94
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLKGLFSLKMCPHILDEMKR 119
H R HTG++PY CP C K F+Q +L++H TH K K CP R
Sbjct: 95 AHQRTHTGEKPYACP--ECGKSFSQLAHLRAHQRTHTGEKPYK-------CPECGKSFSR 145
Query: 120 HD 121
D
Sbjct: 146 ED 147
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H TH G + + C ECGK+F + + L+ HQ HTGEKP+ C CGK FS +LR
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP--ECGKSFSQLAHLR 122
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLKGLFSLKMCPHILDEMKR 119
H R HTG++PY CP C K F++ NL +H TH K K CP R
Sbjct: 123 AHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKPYK-------CPECGKSFSR 173
Query: 120 HDG 122
D
Sbjct: 174 RDA 176
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+R H TH G + + C ECGK+F + + L+ HQ HTGEKP++C CGK FS + NL
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLH 150
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
TH R HTG++PY CP C K F++ L H TH K
Sbjct: 151 THQRTHTGEKPYKCP--ECGKSFSRRDALNVHQRTHTGKK 188
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
G + + C ECGK+F S L HQ HTGEKP++C CGK FS +L H R HTG+
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHTGE 75
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+PY CP C K F+Q NL++H TH K
Sbjct: 76 KPYKCP--ECGKSFSQRANLRAHQRTHTGEK 104
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 64 IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLK 102
+ G++PY CP C K F++S +L H TH K K
Sbjct: 15 LEPGEKPYACP--ECGKSFSRSDHLAEHQRTHTGEKPYK 51
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 6 HTHGPRV--HVC--AEC---GKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 58
H GP HVC EC GK+F KL H VHTGEKPF C F GCGK F+ NL
Sbjct: 49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENL 108
Query: 59 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+ H R HTG++P+ C F+GC+++FA S++ K H+ H K
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 43 CTFEGC---GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
C +E C GK F + L H+R+HTG++P+ CPF GC K FA+S NLK H TH K
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK 119
Query: 100 LLKGLF 105
K F
Sbjct: 120 PFKCEF 125
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+ + C ECGK+F +SS L++HQ HTGEKP++C CGK FS +L+ H R HTG++P
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCP--ECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
Y CP C K F++S +L H TH K
Sbjct: 61 YKCP--ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
++KH TH G + + C ECGK+F +SS L++HQ HTGEKP++C CGK FS +L
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP--ECGKSFSRSDHLS 77
Query: 60 THVRIH 65
H R H
Sbjct: 78 RHQRTH 83
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
EKP++C CGK FS NL+ H R HTG++PY CP C K F+QS++L+ H TH
Sbjct: 2 EKPYKCP--ECGKSFSQSSNLQKHQRTHTGEKPYKCP--ECGKSFSQSSDLQKHQRTHTG 57
Query: 98 AKLLKGLFSLKMCPHILDEMKRHD 121
K K CP R D
Sbjct: 58 EKPYK-------CPECGKSFSRSD 74
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
++KH TH G + + C ECGK+F S L RHQ H +K
Sbjct: 48 LQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 11 RVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
R+H C C K + +SS LK H HTGEKP++CT+EGC RF+ L H R HTG
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+P+ C CN+ F++S +L H+ H
Sbjct: 74 KPFQCGV--CNRSFSRSDHLALHMKRH 98
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 43 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLK 102
C + GC K ++ +L+ H+R HTG++PY C ++GC+ +FA+S L H H AK +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 103 -GLF--SLKMCPHILDEMKRH 120
G+ S H+ MKRH
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLK 102
R + C + GC K + +S++LK+H+ TH K K
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYK 47
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 17 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 76
+C + F S +LKRHQ HTG KPFQC + C ++FS +L+TH R HTG++P+ C +
Sbjct: 43 DCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWP 100
Query: 77 GCNKKFAQSTNLKSHILTH 95
C KKFA+S L H H
Sbjct: 101 SCQKKFARSDELVRHHNMH 119
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 11 RVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
R +CA C K + + S L+ H HTGEKP+QC F+ C +RFS L+ H R HTG
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+P+ C C +KF++S +LK+H TH K
Sbjct: 65 KPFQC--KTCQRKFSRSDHLKTHTRTHTGEK 93
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
++PF C + GC KR+ +L+ H R HTG++PY C F C ++F++S LK H H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 98 AK 99
K
Sbjct: 64 VK 65
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 12 VHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
H C A CGK + +SS LK H HTGEKP+ C ++GCG +F+ L H R HTG R
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 70 PYVCPFDGCNKKFAQSTNLKSHILTH 95
P+ C C++ F++S +L H+ H
Sbjct: 65 PFQC--QKCDRAFSRSDHLALHMKRH 88
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+ C + GC K + +S++LK+H+ TH K
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEK 34
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 12 VHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
H C A CGK + +SS LK H HTGEKP+ C ++GCG +F+ L H R HTG R
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Query: 70 PYVCPFDGCNKKFAQSTNLKSHILTH 95
P+ C C++ F++S +L H+ H
Sbjct: 66 PFQC--QKCDRAFSRSDHLALHMKRH 89
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+ C + GC K + +S++LK+H+ TH K
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEK 35
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 6 HTHGPRVHVCAECG------KAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
H HG R G + F L H HTGEKP +CTFEGC K +S NL+
Sbjct: 27 HIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 91
TH+R HTG++PY+C +GC+K F+ +++ H
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 1 MRKHLHTHGPRVHVCA--ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 58
MR+H G + H C C K++ LK H HTGEKP+ C EGC K FS +
Sbjct: 59 MRRHT---GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDR 115
Query: 59 RTHV-RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 94
H R H+ ++PYVC GC K++ ++L+ H+ T
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 77
C + F +SS L RH +HTG+KPFQC C + FS +L TH+R HTG++P+ C D
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DI 67
Query: 78 CNKKFAQSTNLKSHILTHAKAK 99
C +KFA+S K H H + K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS NL H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 98 AKLLKGLFSLKMCPHIL---DEMKRH 120
K F+ +C DE KRH
Sbjct: 60 EK----PFACDICGRKFARSDERKRH 81
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H+ H G + C C + F S L H HTGEKPF C CG++F+ +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERK 79
Query: 60 THVRIH 65
H +IH
Sbjct: 80 RHTKIH 85
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
H+ TH G + C CG+ F S + KRH +H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 77
C + F S++L RH +HTG+KPFQC C + FS +L TH+R HTG++P+ C D
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DI 67
Query: 78 CNKKFAQSTNLKSHILTHAKAK 99
C +KFA+S K H H + K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 98 AKLLKGLFSLKMCPHIL---DEMKRH 120
K F+ +C DE KRH
Sbjct: 60 EK----PFACDICGRKFARSDERKRH 81
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H+ H G + C C + F S L H HTGEKPF C CG++F+ +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERK 79
Query: 60 THVRIH 65
H +IH
Sbjct: 80 RHTKIH 85
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
H+ TH G + C CG+ F S + KRH +H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 77
C + F +S L RH +HTG+KPFQC C + FS +L TH+R HTG++P+ C D
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DI 67
Query: 78 CNKKFAQSTNLKSHILTHAKAK 99
C +KFA+S K H H + K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS +L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 98 AKLLKGLFSLKMCPHIL---DEMKRH 120
K F+ +C DE KRH
Sbjct: 60 EK----PFACDICGRKFARSDERKRH 81
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H+ H G + C C + F S L H HTGEKPF C CG++F+ +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERK 79
Query: 60 THVRIH 65
H +IH
Sbjct: 80 RHTKIH 85
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
H+ TH G + C CG+ F S + KRH +H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 77
C + F S+ L RH +HTG+KPFQC C + FS +L TH+R HTG++P+ C D
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DI 67
Query: 78 CNKKFAQSTNLKSHILTHAKAK 99
C +KFA+S K H H + K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS +L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 98 AKLLKGLFSLKMCPHIL---DEMKRH 120
K F+ +C DE KRH
Sbjct: 60 EK----PFACDICGRKFARSDERKRH 81
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H+ H G + C C + F S L H HTGEKPF C CG++F+ +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERK 79
Query: 60 THVRIH 65
H +IH
Sbjct: 80 RHTKIH 85
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
H+ TH G + C CG+ F S + KRH +H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 77
C + F S +L RH +HTG+KPFQC C + FS +L TH+R HTG++P+ C D
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DI 67
Query: 78 CNKKFAQSTNLKSHILTHAKAK 99
C +KFA+S K H H + K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 98 AKLLKGLFSLKMCPHIL---DEMKRH 120
K F+ +C DE KRH
Sbjct: 60 EK----PFACDICGRKFARSDERKRH 81
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H+ H G + C C + F S L H HTGEKPF C CG++F+ +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERK 79
Query: 60 THVRIH 65
H +IH
Sbjct: 80 RHTKIH 85
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
H+ TH G + C CG+ F S + KRH +H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 77
C + F S +L RH +HTG+KPFQC C + FS +L TH+R HTG++P+ C D
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DI 66
Query: 78 CNKKFAQSTNLKSHILTHAK 97
C +KFA+S K H H +
Sbjct: 67 CGRKFARSDERKRHTKIHLR 86
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 58
Query: 98 AKLLKGLFSLKMCPHIL---DEMKRH 120
K F+ +C DE KRH
Sbjct: 59 EK----PFACDICGRKFARSDERKRH 80
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H+ H G + C C + F S L H HTGEKPF C CG++F+ +
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERK 78
Query: 60 THVRIH 65
H +IH
Sbjct: 79 RHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 77
C + F S +L RH +HTG+KPFQC C + FS +L TH+R HTG++P+ C D
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DI 67
Query: 78 CNKKFAQSTNLKSHILTHAK 97
C +KFA+S K H H +
Sbjct: 68 CGRKFARSDERKRHTKIHLR 87
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 98 AKLLKGLFSLKMCPHIL---DEMKRH 120
K F+ +C DE KRH
Sbjct: 60 EK----PFACDICGRKFARSDERKRH 81
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ +H+ H G + C C + F S L H HTGEKPF C CG++F+ +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERK 79
Query: 60 THVRIH 65
H +IH
Sbjct: 80 RHTKIH 85
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 16 AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF 75
A+CG A+ ++ KL+ H HTGEKPF C EGC K F+ +L H HTG++ + C
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 76 DGCNKKFAQSTNLKSHI 92
DGC+ +F N+K H
Sbjct: 78 DGCDLRFTTKANMKKHF 94
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 35/131 (26%)
Query: 1 MRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
++ HL H G + C E C K F L RH L HTGEK F C +GC RF+ N
Sbjct: 30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 89
Query: 58 LRTH------VRI--------------------------HTGDRPYVCPFDGCNKKFAQS 85
++ H ++I HT PY CP +GC+K+F+
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149
Query: 86 TNLKSHILTHA 96
+ LK H HA
Sbjct: 150 SRLKRHEKVHA 160
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 1 MRKHL---HTHGPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLD 55
M+KH H V+VC CGKAF + ++LK HQ HT + P++C EGC KRFSL
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149
Query: 56 FNLRTHVRIHTG 67
L+ H ++H G
Sbjct: 150 SRLKRHEKVHAG 161
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 98
K + C+F CG ++ ++ L+ H+ HTG++P+ C +GC K F +L H LTH
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 99 K 99
K
Sbjct: 71 K 71
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 16 AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF 75
A+CG A+ ++ KL+ H HTGEKPF C EGC K F+ +L H HTG++ + C
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
Query: 76 DGCNKKFAQSTNLKSHI 92
DGC+ +F N+K H
Sbjct: 69 DGCDLRFTTKANMKKHF 85
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 98
K + C+F CG ++ ++ L+ H+ HTG++P+ C +GC K F +L H LTH
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 99 K 99
K
Sbjct: 62 K 62
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 74
C CGK+F SS L H L+H+ +P+ C + CGKRF +++ H IHTG++P+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 75 FDGCNKKFAQSTNLKSHILTHA 96
C K F+QS+NL +H H
Sbjct: 62 V--CGKAFSQSSNLITHSRKHT 81
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ HL H R + C CGK F + S +K+H +HTGEKP +C + CGK FS NL
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLI 74
Query: 60 THVRIHTG 67
TH R HTG
Sbjct: 75 THSRKHTG 82
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 48 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
CGK F L TH+ IH+ RPY C + C K+F Q +++K H H K
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEK 56
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 17 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 76
C + F + + L H +HTG+KPFQC C + FS +L H+R HTG++P+ C D
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTGEKPFAC--D 66
Query: 77 GCNKKFAQSTNLKSHILTHAKAK 99
C +KFA H H + K
Sbjct: 67 ICGRKFATLHTRTRHTKIHLRQK 89
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS NL TH+RIHTG +P+ C C + F+Q +L +HI TH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTG 59
Query: 98 AK 99
K
Sbjct: 60 EK 61
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 62
H+ H G + C C + F + + L H HTGEKPF C + CG++F+ H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFAC--DICGRKFATLHTRTRHT 82
Query: 63 RIH 65
+IH
Sbjct: 83 KIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
E+P+ C E C +RFS NL TH+RIHTG +P+ C C + F+Q T L HI TH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTG 59
Query: 98 AK 99
K
Sbjct: 60 EK 61
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 17 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 76
C + F + + L H +HTG+KPFQC C + FS L H+R HTG++P+ C D
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTGEKPFAC--D 66
Query: 77 GCNKKFAQSTNLKSHILTHAKAK 99
C +KFA H H + K
Sbjct: 67 ICGRKFATLHTRDRHTKIHLRQK 89
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 5 LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 64
+HT G + C C + F + + L +H HTGEKPF C + CG++F+ H +I
Sbjct: 28 IHT-GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFAC--DICGRKFATLHTRDRHTKI 84
Query: 65 H 65
H
Sbjct: 85 H 85
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD--RPY 71
C CGK F + L RH+L H+GEKP+ C CG RF + HVR H G +PY
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 72 VCPFDGCNKKFAQSTNLKSHI 92
+C C K F++ +L HI
Sbjct: 67 IC--QSCGKGFSRPDHLNGHI 85
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
C ECGKAF SS L +HQ VHTGEKP++C CGK FS + L H RIHT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHT 66
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
EKP+ C CGK FS L H R+HTG++PY C C K F+Q++ L +H H
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHTS 67
Query: 98 A 98
Sbjct: 68 G 68
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
G +++ C +CGK+F S+ RH +H G +P+ C CGK+F + +L H++IHTG
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGI 63
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKA 98
+PY C C K+F + H+ + K+
Sbjct: 64 KPYECNI--CAKRFMWRDSFHRHVTSCTKS 91
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 61
+H+ H G R + C CGK F L H +HTG KP++C C KRF + H
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRH 84
Query: 62 V 62
V
Sbjct: 85 V 85
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 11 RVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
R H+C+ CGK + +SS LK H HTGEKPF C+++GC +RF+ L H R H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 43 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
C+ GCGK + +L+ H R HTG++P+ C + GC ++FA+S L H TH
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLKGLFSLKMCPHIL---DEMKRH 120
R ++C GC K + +S++LK+H TH K S K C DE+ RH
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFS--CSWKGCERRFARSDELSRH 68
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
R + C ECGK+F SS L +H+ HTGEKP++C + CGK F +L H R+HTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 48 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLKG 103
CGK FS +L H R HTG++PY C D C K F Q ++L H H + G
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGPSSG 77
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ KH TH G + + C ECGKAF++ S L H VHTG P
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
C C +F L H+ VHTGEKP++C CG +F+ NL+TH RIH+G++P
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
+KP++C + C F NL +H +HTG++PY C C +F + NLK+H H+
Sbjct: 15 DKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSG 70
Query: 98 AK 99
K
Sbjct: 71 EK 72
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 40 PFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
PFQCTF CGKRFSLDFNL+THV+IHTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 70 PYVCPFDGCNKKFAQSTNLKSHILTHA 96
P+ C F C K+F+ NLK+H+ H
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHT 27
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
CGKAF + ++LK HQ HT + P++C EGC KRFSL L+ H ++H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 41 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 96
+ C FE CGK F L+ H HT PY CP +GC+K+F+ + LK H HA
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTHAK 97
YVC F+ C K F + LK H +H +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ 28
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
CGKAF + ++LK HQ HT + P++C EGC KRFSL L+ H ++H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 41 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 96
+ C FE CGK F L+ H HT PY CP +GC+K+F+ + LK H HA
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTHAK 97
YVC F+ C K F + LK H +H +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ 28
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 96
+P+ C E C +RFS L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 17 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
C + F S +L RH +HTG+KPFQC C + FS +L TH+R HT
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLKGLFSLK 108
RPY CP + C+++F++S L HI H K + ++
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMR 57
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
GP H C CGK F KLK H HTG KP++C + C + +L H+RIH+ +
Sbjct: 7 GP--HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDE 62
Query: 69 RPY---VCPFDGCNKKFAQSTNLKSHILTH 95
RP+ +CP+ N S+ L H+ +H
Sbjct: 63 RPFKCQICPYASRN-----SSQLTVHLRSH 87
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
++ H+ H G + + C C A +SS L +H +H+ E+PF+C R S L
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS--SQLT 81
Query: 60 THVRIHTGD 68
H+R HTGD
Sbjct: 82 VHLRSHTGD 90
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+C CG+ F +S L H+ HT E+P+ C + C K F +LR H IH+ ++P+ C
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 74 PFDGCNKKFAQSTNLKSHILTHAKA 98
C K F QS L H H +
Sbjct: 77 --QECGKGFCQSRTLAVHKTLHMQT 99
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
+K F C F CG+ F+ +NL H R HT +RPY C D C+K F + +L+ H H+K
Sbjct: 15 KKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSK 70
Query: 98 AKLLK 102
K K
Sbjct: 71 EKPFK 75
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
R + C C KAF L+ H+ +H+ EKPF+C + CGK F L H +H
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLH 96
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 91
KPFQC C + FS +L TH+R HTG++P+ C D C +KFA+S K H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRH 50
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 53
C C + F S L H HTGEKPF C CG++F+
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFA 42
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 31/108 (28%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQC-----------------------------TF 45
C C K F+ LK H HTGEKPF+C T
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 46 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 93
C + F LR H+ HTG+ PY C C+++F Q +L+SH++
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMI 115
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHTG 67
+V C+ C + F +L+ H + HTGE P++C+ C ++F +L++H +++H+G
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCS--SCSQQFMQKKDLQSHMIKLHSG 120
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 37 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 96
G +C++ CGK F ++ L H+R HTG++PY C F C AQ T+L+ H+ H
Sbjct: 1 GSSSRECSY--CGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERHH 56
Query: 97 K 97
K
Sbjct: 57 K 57
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--EGCGKRFSLDFNLRTH 61
G C+ CGK F + L H HTGEKP++C F ++ SL ++L H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C ECGKAF ++SKL RHQ VHTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
KP+QC CGK FS L H R+HTG++P
Sbjct: 11 KPYQCNE--CGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
G ++C C +++V + L+RH +H+ EK + C + C K F L H HTG+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGE 76
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHI 92
R Y C C K F + SHI
Sbjct: 77 RRYQCL--ACGKSFINYQFMSSHI 98
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C ECGKAF ++SKL RHQ +HTGEKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK FS L H RIHTG++P
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 18 CGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 76
CG+ F L H+ H +K F C CGK F+ +L+ H+++H+ R Y+C F
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 77 G 77
G
Sbjct: 75 G 75
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHILT 94
+G C F GCG+ FS L H + H + + CP C K F +LK H+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 95 HAKAK 99
H+ +
Sbjct: 63 HSDTR 67
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
R H C ECGK+F++S+ L +HQ +HTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
E+P +C CGK F +L H RIHTG++P
Sbjct: 10 ERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEKP 40
++C ECGK+F++ S L RH+ +HTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP+ C CGK F +L H RIHTG++P
Sbjct: 10 EKPYICNE--CGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPFQC E CGKRF+ + +L +H R+HTG++P
Sbjct: 10 EKPFQC--EECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F ++S L HQ VHTGEKP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGKAF+ S+L+ HQ +HTGEKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP+ C E CGK F D L+ H RIHTG++P
Sbjct: 10 EKPYNC--EECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
R ++C CGKAF + S L +HQ +HTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
E+P+ CT CGK F+ NL H +IHTG++P
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF+C CGK FS+ L TH RIHTG++P
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGEKP 40
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
CAECGK+F SS+L HQ +HTGEKP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F +S L RHQL+HTGEKP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F + +L H IHTG++P
Sbjct: 10 EKPYKC--HECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + CAECGKAF + S L HQ +HTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F+ NL TH +IHTG++P
Sbjct: 10 EKPYRCA--ECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C ECGKAF + + L +HQ +HTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F+ NL H RIHTG++P
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ ++C ECGKAF S L HQ++HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
KP+ C CGK FS+ +L TH IHTG++P
Sbjct: 11 KPYMC--NECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF+C E CGKRF+ + L +H R+HTG++P
Sbjct: 10 EKPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F ++S+L HQ VHTGEKP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
R + C+ECGKAF++ S L HQ +H GEKP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ G + VC ECGK F +SS L +HQ +H+GEKP
Sbjct: 5 SSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+G+KP C CGK F L H RIH+G++P
Sbjct: 6 SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEKP 40
+VC CGKAF S++L RHQ +HTGEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP+ C + CGK F L L H RIHTG++P
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF CT+ GCG RFS L H R H+G +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
++P+ C + GC +F++S L H +H+ K
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
R + C+ECGKAF S L HQ +HTGEKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
E+ ++C+ CGK F+ L H RIHTG++P
Sbjct: 10 ERHYECSE--CGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS-LDFNLRTHVRIHTGD 68
VC C +AF LKRH HT EKP+ C C + F+ D +R +IH+G+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 46 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 91
E C + F+ +L+ H R HT ++PY C CN+ F + L H
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRH 49
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGKAF S L HQ +HTGEKP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
K F+CT CGK F+ L H +IHTG++P
Sbjct: 11 KHFECT--ECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C E CGK ++ FNL H ++HTG+RP
Sbjct: 10 EKPYKC--EKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C +CGK + L HQ VHTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F +S L RHQ +HTGEKP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F + L H RIHTG++P
Sbjct: 10 EKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGKAF +++ L +HQ VHTGEKP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C + CGK FS +L H R+HTG++P
Sbjct: 10 EKPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGKAF S L HQ++HTGEKP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F NL TH IHTG++P
Sbjct: 10 EKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F ++S L RH+ +HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+KP++C CGK F+ + +L H IHTG++P
Sbjct: 10 KKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F ++S L RH+ +HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F+ + +L H IHTG++P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F +S+L +HQ +HTGEKP
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EK ++C CGK FS + L H +IHTG++P
Sbjct: 10 EKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
R H C++CGK F+++S +H+ +HTGEKP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ ++CAECGKAF S L +HQ +HT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP+ C CGK F++ NL H +IHT +P
Sbjct: 10 EKPYICA--ECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
+ G + +VC ECGKAF +SS L H+ VHTGE
Sbjct: 5 SSGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
+GEKP+ C + CGK F+ L H R+HTG+
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ H C ECG+ F S L +HQ +HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 48 CGKRFSLDFNLRTHVRIHTGDRP 70
CG+ F+L +L H RIHTG++P
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF+C + CGK F + +L +H+RIHTG++P
Sbjct: 10 EKPFKC--KECGKAFRQNIHLASHLRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGKAF ++ L H +HTGEKP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F ++S L RH+ +HTGEKP
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F+ + +L H IHTG++P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F S+ L +HQL+H GE P
Sbjct: 15 CNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
T E PF+C CGK FS +L H IH G+ P
Sbjct: 8 TKEHPFKCNE--CGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+GEKP+QC CGK FS +L H R+HTG P
Sbjct: 6 SGEKPYQCKE--CGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ G + + C ECGK+F + L H+ +HTG P
Sbjct: 5 SSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F ++S L RH+ VHTG KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F+ + +L H R+HTG +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C++CGK+F++ S+L HQ +HTGE P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C+ CGK F L H RIHTG+ P
Sbjct: 10 EKPYECS--DCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+KPF+CT CGK F NL TH RIHTG++
Sbjct: 10 QKPFECTH--CGKSFRAKGNLVTHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C CGK+F L HQ +HTGEK
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
E+PF C F CGK + L H R H G RP CP C K F + + H+ H
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCP--ECGKCFRDQSEVNRHLKVH 55
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
R C CGK + ++S L RH+ H G +P C CGK F + H+++H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCP--ECGKCFRDQSEVNRHLKVH 55
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 35
+ +H H G R C ECGK F + S++ RH VH
Sbjct: 20 LSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C CGK F +SS L+ HQ VHTGEKP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EK ++C CGK FS +L+TH R+HTG++P
Sbjct: 10 EKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
++ C EC K F +SS L HQ +HTGEKP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+K F+C C K F+ +L H RIHTG++P
Sbjct: 10 KKLFKC--NECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C ECGKAF S L HQ++HTGEK
Sbjct: 15 CYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
T EKP++C +E CGK F NL TH IHTG++
Sbjct: 8 TKEKPYKC-YE-CGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F ++S L H +HTGEKP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F+ + +L H RIHTG++P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ G + + C+ECGKAF S L H HTGEKP
Sbjct: 5 SSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+G KP+ C+ CGK F L H+R HTG++P
Sbjct: 6 SGVKPYGCS--ECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEKP 40
+C+ECGK F + L HQ +HTGE+P
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
E PF C+ CGK F+ NL H +IHTG+RP
Sbjct: 10 ENPFICS--ECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+PF CT+ CGKRF+ L+ H R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 10 PRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
P + + CGK F S +L+RH+ HTGEK
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
RP++C + C K+F +S L+ H TH K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ G RV+ C ECGK+F + L H+ +HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+G++ ++C + CGK F +L H RIHTG P
Sbjct: 6 SGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+K F+C F GC K F +N+R+H++ H DR
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTH 95
D+ + C F GC K F + N++SHI TH
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C ECGK F + S L HQ HTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP+ C CGK FS L H R HTG++P
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 46 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
E CG R L+ H+R HT RPY C + CN F NL H+ + A +K
Sbjct: 5 EECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHSK 56
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR 63
++C ECG + S LK+H HT +P+ CT+ C F NL H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMK 50
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK FS+ +L TH IHTG +P
Sbjct: 10 EKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C +CGKAF S L HQ +HTG+KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.017, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTG 37
+ G + +VC++CGKAF S+L HQ +HTG
Sbjct: 5 SSGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 32.0 bits (71), Expect = 0.43, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+GEKP+ C+ CGK F+ L H IHTG
Sbjct: 6 SGEKPYVCS--DCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F ++S L HQ +HTG KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F+ + +L H RIHTG +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHTGE 38
G + +VC ECGKAF+ S H+ +HTGE
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
+GEKP+ CT CGK F + TH RIHTG+
Sbjct: 6 SGEKPYVCTE--CGKAFIRKSHFITHERIHTGE 36
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ H C ECGK+F +S+L HQ +HTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP +C CGK FS + L H RIHTG+ P
Sbjct: 10 EKPHEC--RECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 15 CAECGKAFVESSKLKRH-QLVHTGEKP 40
C ECGKAF++++ L RH + HTGEKP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C+ CGK+F + S+L HQ +HTGEKP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C+ CGK F+ L H +IHTG++P
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C ECGKAF ++S +HQ +HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F + + H R+HTG RP
Sbjct: 10 EKPYKCME--CGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK+F +S L +HQ VH+GEKP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP+ C + CGK F L H R+H+G++P
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+P+ C+ CGKRFSL + TH R+HTG
Sbjct: 2 RPYSCSV--CGKRFSLKHQMETHYRVHTG 28
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C ECGKAF S L HQ H+GEKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F +L H H+G++P
Sbjct: 10 EKPYKCNE--CGKAFRARSSLAIHQATHSGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK++ + L +HQ VHTGEKP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF+C CGK ++ +L H R+HTG++P
Sbjct: 10 EKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C CGK+F S+L RH +VHT EKP
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF+C CGK F L H +HT ++P
Sbjct: 10 EKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF C CGK FS L H RIHTG++P
Sbjct: 10 EKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C +CGKAF + L +H+ +HTGEKP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.8 bits (81), Expect = 0.029, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C E CG RF +LR HV IHTG P
Sbjct: 9 EKPYKC--ETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 31.2 bits (69), Expect = 0.76, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C CG FV+ + L+ H L+HTG P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C + CGK FS +L H+R+HTG P
Sbjct: 9 EKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C +CGKAF + L H VHTG P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C+ CGK FS +L H RIH+G +P
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C+ CGKAF L HQ +H+G+KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
+GEKP++CT CGK F L L H R HTG+
Sbjct: 6 SGEKPYECTD--CGKAFGLKSQLIIHQRTHTGE 36
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGE 38
+ G + + C +CGKAF S+L HQ HTGE
Sbjct: 5 SSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F+ L H +VHTGEKP
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C E CGK F +L TH +HTG++P
Sbjct: 10 EKPYKC--EECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ G + + C ECGKAF S+L H+ VHTG KP
Sbjct: 5 SSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+GEKP+ C CGK F+ L H +HTG +P
Sbjct: 6 SGEKPYSCNE--CGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGE 38
+ G ++H C CGKAF S+L HQ +HTGE
Sbjct: 5 SSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
+GEK +C CGK FS L H RIHTG+
Sbjct: 6 SGEKLHECN--NCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C ECGK F S LKRH +H+GEK
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 40 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
P +C CGK+F+ NL+ H+RIH+G++
Sbjct: 2 PLKC--RECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
G ++H C+EC K F S+L HQ +HTGE P
Sbjct: 7 GEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+GEK +C+ C K FS L H RIHTG+ P
Sbjct: 6 SGEKLHECSE--CRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+ + C+ECGK+F S +L +H + HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
KP+QC+ CGK FS + L H HT ++P
Sbjct: 11 KPYQCS--ECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGE 38
C+ECGKAF+ +S+L HQ H+GE
Sbjct: 15 CSECGKAFIRNSQLIVHQRTHSGE 38
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
T EKP++C+ CGK F + L H R H+G+
Sbjct: 8 TREKPYECSE--CGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGE 38
+ G + +VC ECGKAF S+L H+ +HTGE
Sbjct: 5 SSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
+G+KP+ C CGK F L L H RIHTG+
Sbjct: 6 SGQKPYVCNE--CGKAFGLKSQLIIHERIHTGE 36
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
R + C ECGKAF S L H+ HTGEKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
++P++C CGK F +L H R HTG++P
Sbjct: 10 QRPYECIE--CGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F S L H +HTGEKP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF+C CGK FS L H ++HTG++P
Sbjct: 10 EKPFKCVE--CGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEK 39
+ H C ECGK F S L+ HQ VH GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP+ C E CG RF L++H+RIHTG P
Sbjct: 9 EKPYPC--EICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKP 40
+++ C ECGK+F + L +H+ +H+GEKP
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.098, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C+ECGKAF S L H H+GEKP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP+ C+ CGK FS L H+R H+G++P
Sbjct: 10 EKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C+EC KAF S L HQ HTGEKP
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF+C+ C K F+ NL H R HTG++P
Sbjct: 10 EKPFECS--ECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEKPFQ 42
C CGK F + L RH+L H+GEKP+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGKAF +L HQ H GEKP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
E P++C CGK FS + L +H R H G++P
Sbjct: 10 ENPYEC--HECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+GEKP+ C CGK FS L H RIHTG++
Sbjct: 6 SGEKPYGCNE--CGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
+ G + + C ECGK F S L HQ +HTGEK
Sbjct: 5 SSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C++CGK+F S+L+ HQ HTGE+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
EKP++C+ CGK F+ LR H + HTG+R
Sbjct: 10 EKPYKCS--DCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C ECGK F +S+ HQ H+GEKP
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKPF+C E CGK F + +H R H+G++P
Sbjct: 10 EKPFKC--EECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C+ CGK F +L H RIHTG RP
Sbjct: 10 EKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C+ECGKAF + L H+ +HTG +P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 43 CTFEGCGKRFSLDFNLRTHVRIHTGDR 69
C +GCGK + +LR H+R HTG+R
Sbjct: 11 CHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C C K+F + S L H+++HTGEKP
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
T EKPF+C + C K F L +H IHTG++P
Sbjct: 8 TAEKPFRC--DTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
KPFQC + C ++FS +L+TH R HTG++
Sbjct: 1 KPFQC--KTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C C KAF + + L +HQ HTGEKP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C C K F+ +L H + HTG++P
Sbjct: 10 EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C CGKAF SS L +H VH+GE+P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C CGK F + +L H +H+G+RP
Sbjct: 10 EKPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C++CGKAF S L HQ HTGE+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
EKP++C+ CGK F+ L H + HTG+R
Sbjct: 10 EKPYKCS--DCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C EC F ++S L+ HQ VH GEKP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 93
R H+G++PY C C+ +F QS +K HIL
Sbjct: 8 RTHSGEKPYECYI--CHARFTQSGTMKMHIL 36
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 34 VHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGD-RPYVCPFDGCNKKFAQSTNLKSH 91
H+GEKP++C C RF+ ++ H+ + HT + + CP C+ A+ ++L H
Sbjct: 9 THSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVH 64
Query: 92 I 92
+
Sbjct: 65 L 65
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
EKP++C E CGK ++ NL H R+H G++
Sbjct: 10 EKPYKC--EDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C +CGK + L HQ VH GEK
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
EKP+ C CGK F L +L H+R+HT
Sbjct: 10 EKPYSCNV--CGKAFVLSAHLNQHLRVHT 36
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGE 38
C CGKAFV S+ L +H VHT E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C C K F +L H RIHTG++P
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C C K+F S L HQ +HTGEKP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGE 38
+VC ECGKAF S L H HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHTGE 38
+ G + C+ECGKAF +L HQ H GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
+GE P++C+ CGK F+ L +H R H G+
Sbjct: 6 SGENPYECSE--CGKAFNRKDQLISHQRTHAGE 36
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 31.6 bits (70), Expect = 0.63, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGE 38
C ECGK F SS L HQ +H GE
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
EKP++C C K FS +L H R+H+G++P
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C C KAF + L +HQ VH+GEKP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 99 KLLKGLFSLKMCPHILDEMKRHDGGYEETLHIPSDHVNTVYLEET------QVLDDHDNS 152
K LK LF + L+ + H+ E+LH+ S+H++++ L E +VLD +N+
Sbjct: 104 KFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNA 163
Query: 153 KKYIQQKFIKKEEPECQITTHHN 175
YI +K E ++ + N
Sbjct: 164 IHYISRKDTNSLEQATNLSLNFN 186
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
KP QC CGK F+ +L HVR HTG++
Sbjct: 1 KPCQCVM--CGKAFTQASSLIAHVRQHTGEK 29
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C CGKAF ++S L H HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C ECGK + L HQ VHTGEK
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
EKP++C CGK + +L H R+HTG++
Sbjct: 10 EKPYKCVE--CGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEK 39
+VC C + F + L+RH +HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.88, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGE 38
+ H+C CGK F LK H+L+HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 58 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 92
LR H RIH DRP+ C + C+ Q +NL H+
Sbjct: 25 LRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHM 57
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
TG KPFQCT+ C + FS +L H + H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 15 CAECGKAFVESSKLKRHQLVHT 36
C ECGKAF L RHQ +HT
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHT 36
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEK 39
+ H C ECG+ F + L HQ++H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C EC K F++ L +H+ VHTGE+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKLLKGLFSLKMCPHIL---DEMKR 119
R HTG++PY C C+K F Q L H + + F C + M R
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 120 H 120
H
Sbjct: 66 H 66
>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2,
Nmr, 20 Structures
Length = 38
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
+KPF CT GCG+RF+ + +L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C++C K F S+L HQ HTG KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
KP+ C+ C K FSL L H R HTG +P
Sbjct: 11 KPYGCS--QCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILT-HAKAK 99
+ Y C + C K+FA S+NLK+HI T H+K K
Sbjct: 1 KTYQCQY--CEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 43 CTFEGC---GKRFSLDFNLRTHVRIHTGDR 69
C +E C GK F + L H+R+HTG++
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
EKP++C C K F+ NL H R HTG+
Sbjct: 10 EKPYECN--ECQKAFNTKSNLMVHQRTHTGE 38
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGE 38
C EC KAF S L HQ HTGE
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTH 95
DRPY C GC+K F ++ +L H +H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 12 VHVC--AECGKAFVESSKLKRHQLVHTG 37
V+VC CG++F + KL RH+ +HTG
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHTG 29
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+GEKP+ C CG RF + HVR H G
Sbjct: 6 SGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+PYVC + C K+F QS+ L +HI H
Sbjct: 1 KPYVC--ERCGKRFVQSSQLANHIRHH 25
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 13 HVCAECGKAFVESSKLKRH 31
+VC CGK FV+SS+L H
Sbjct: 3 YVCERCGKRFVQSSQLANH 21
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C ECGKAF S+L HQ H +K
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 13 HVCAECGKAFVESSKLKRH-QLVHTGEKPFQC 43
++C CGK F L H + VHT E+P +C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEK 39
VC C +AF LKRH HT EK
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVHT 36
+ G + + CAEC + F ++++L +HQ +HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEK 39
VC C +AF LKRH HT EK
Sbjct: 4 VCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 15 CAECGKAFVESSKLKRHQLVH 35
C C ++FVE S L RHQ VH
Sbjct: 4 CGLCERSFVEKSALSRHQRVH 24
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEK 39
VC C +AF LKRH HT EK
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 15 CAECGKAFVESSKLKRHQLVHTG 37
C ECGKAF+ S L H+ H G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGE 38
C ECGK F +L HQ H+G+
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EPP|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 278
Length = 66
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 15 CAECGKAFVESSKLKRHQLVH 35
C CGK F ++++L++H+ H
Sbjct: 16 CGLCGKVFTDANRLRQHEAQH 36
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
EKPFQC + CG FS +L H+R H
Sbjct: 10 EKPFQC--KECGMNFSWSCSLFKHLRSH 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,841,303
Number of Sequences: 62578
Number of extensions: 401690
Number of successful extensions: 1380
Number of sequences better than 100.0: 182
Number of HSP's better than 100.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 464
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)