RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16882
(318 letters)
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 166 bits (423), Expect = 4e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 60
MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT
Sbjct: 23 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK
Sbjct: 83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 103 bits (259), Expect = 1e-27
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 74
C K F ++S +++H H G + C CGK F L+ H +HTG++P+ C
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 75 FDGCNKKFAQSTNLKSHILTH 95
F+GC K+F+ NL++H+ H
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIH 87
Score = 72.5 bits (179), Expect = 4e-16
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ C +GC K F + +R H+ H G R +VC C K F +S+ LK H L H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVH 57
Score = 54.4 bits (132), Expect = 1e-09
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 2 RKHLHTH-GPRVHVCA--ECGKAFVESSKLKRHQLVHTGEKPFQ 42
R H+ H G R +VC C K F +S+ LK H L H K Q
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 130 bits (328), Expect = 2e-37
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 1 MRKH------LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 54
+ + H C GK+F KL H VHTGEKPF C F GCGK F+
Sbjct: 45 VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR 104
Query: 55 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
NL+ H R HTG++P+ C F+GC+++FA S++ K H+ H
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 110 bits (278), Expect = 4e-30
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-------CGKRFSLDFNL 58
C + F +L H + P Q GK F + L
Sbjct: 20 DE-AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 59 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
H+R+HTG++P+ CPF GC K FA+S NLK H TH
Sbjct: 79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 96.2 bits (240), Expect = 1e-24
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
+ H+ H G + C CGK F S LK H+ HTGEKPF+C FEGC +RF+ +
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 58 LRTHVRIHTGDRPYVC 73
+ H+ +HT D+
Sbjct: 138 RKKHMHVHTSDKSGPS 153
Score = 81.2 bits (201), Expect = 7e-19
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 9/87 (10%)
Query: 16 AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF 75
G + + + + + + C + FS L THV + P
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNH 58
Query: 76 DG-------CNKKFAQSTNLKSHILTH 95
K F L +HI H
Sbjct: 59 VCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 55.4 bits (134), Expect = 1e-09
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 2 RKHLHTH-GPRVHVCA--ECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ H TH G + C C + F SS K+H VHT +K +
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 125 bits (316), Expect = 1e-35
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 2 RKHLHTHGPRVHVCAECG-----KAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF 56
+H+H + VC G + F L H HTGEKP +CTFEGC K +S
Sbjct: 25 SEHIHG-ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLE 83
Query: 57 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL-TH 95
NL+TH+R HTG++PY+C +GC+K F+ +++ H TH
Sbjct: 84 NLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 116 bits (294), Expect = 2e-32
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 1 MRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
+ H+ H G + H C C K++ LK H HTGEKP+ C EGC K FS +
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114
Query: 58 LRTH-VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
H R H+ ++PYVC GC K++ ++L+ H+ T
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 110 bits (277), Expect = 7e-30
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 15 CAECGKAFVESSKLKRH---QLVHTGEKPFQCTFEGC---GKRFSLDFNLRTHVRIHTGD 68
C + F +L H + +H K F C + GC + F + L H+R HTG+
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+P+ C F+GC K +++ NLK+H+ +H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 82.6 bits (205), Expect = 1e-19
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 2 RKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFN 57
+ HL +H G + ++C C KAF +S +HQ H+ EKP+ C GC KR++ +
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSS 145
Query: 58 LRTHVRIHTG 67
LR HV+ G
Sbjct: 146 LRKHVKTVHG 155
Score = 63.8 bits (156), Expect = 1e-12
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHV---RIHTGDRPYVCPFDGCN---KKFAQSTNLKSH 91
E + +GC + F L H+ IH + +VC + GC+ + F L H
Sbjct: 1 ETDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 92 ILTH 95
+ H
Sbjct: 59 MRRH 62
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 115 bits (290), Expect = 1e-32
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
T A CGK + +SS LK H HTGEKP+ C ++GCG +F+ L H R H
Sbjct: 2 RT-ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 66 TGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
TG RP+ C C++ F++S +L H+ H
Sbjct: 61 TGHRPFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 81.8 bits (203), Expect = 6e-20
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 94
T C + GCGK ++ +L+ H+R HTG++PY C +DGC KFA+S L H
Sbjct: 2 RTATHT--CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 95 HAKAK 99
H +
Sbjct: 60 HTGHR 64
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 118 bits (298), Expect = 1e-32
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 3 KHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
+ ++C A+CG A+ ++ KL+ H HTGEKPF C EGC K F+ +L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
H HTG++ + C DGC+ +F N+K H
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 109 bits (275), Expect = 3e-29
Identities = 37/99 (37%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 2 RKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 58
+ HL H G + C E C K F L RH L HTGEK F C +GC RF+ N+
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM 90
Query: 59 RTHVRIHTG--DRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ H YVC F+ C K F + LK H +H
Sbjct: 91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 95.7 bits (239), Expect = 6e-24
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 1 MRKHLHTH-----GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLD 55
M+KH + V CGKAF + ++LK HQ HT + P++C EGC KRFSL
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149
Query: 56 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 94
L+ H ++H G D C+ T H+
Sbjct: 150 SRLKRHEKVHAGYPCKKD--DSCSFVGKTWTLYLKHVAE 186
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 115 bits (290), Expect = 2e-32
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 11 RVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
R+H C C K + +SS LK H HTGEKP++CT+EGC RF+ L H R HTG
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+P+ C CN+ F++S +L H+ H
Sbjct: 74 KPFQCGV--CNRSFSRSDHLALHMKRH 98
Score = 85.8 bits (213), Expect = 2e-21
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 21 AFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK 80
+ S + C + GC K ++ +L+ H+R HTG++PY C ++GC+
Sbjct: 2 SSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 81 KFAQSTNLKSHILTHAKAK 99
+FA+S L H H AK
Sbjct: 56 RFARSDELTRHYRKHTGAK 74
Score = 74.2 bits (183), Expect = 5e-17
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 2 RKHLHTH-GPRVHVCA--ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 58
+ HL TH G + + C C F S +L RH HTG KPFQC C + FS +L
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC--GVCNRSFSRSDHL 91
Query: 59 RTHVRIHT 66
H++ H
Sbjct: 92 ALHMKRHQ 99
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 114 bits (288), Expect = 5e-32
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 2 RKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 58
+ H H G + + C +C + F S +LKRHQ HTG KPFQC + C ++FS +L
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHL 82
Query: 59 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+TH R HTG++P+ C + C KKFA+S L H H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 112 bits (282), Expect = 5e-31
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 13 HVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
+CA C K + + S L+ H HTGEKP+QC F+ C +RFS L+ H R HTG +P
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTH 95
+ C C +KF++S +LK+H TH
Sbjct: 67 FQC--KTCQRKFSRSDHLKTHTRTH 89
Score = 88.3 bits (220), Expect = 5e-22
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ ++PF C + GC KR+ +L+ H R HTG++PY C F C ++F++S LK H H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 106 bits (267), Expect = 3e-29
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 17 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 76
C + F +S L RH +HTG+KPFQC C + FS +L TH+R HTG++P+ C D
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFAC--D 66
Query: 77 GCNKKFAQSTNLKSHILTH 95
C +KFA+S K H H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 82.5 bits (205), Expect = 4e-20
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 2 RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 60
+H+ H G + C C + F S L H HTGEKPF C CG++F+ +
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKR 80
Query: 61 HVRIHTG 67
H +IH
Sbjct: 81 HTKIHLR 87
Score = 77.1 bits (191), Expect = 4e-18
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
E+P+ C E C +RFS +L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTH 57
Score = 49.8 bits (120), Expect = 3e-08
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEK 39
HL TH R H C CG+ F S + KRH +H +K
Sbjct: 49 HLTTH-IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 103 bits (260), Expect = 3e-28
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 12 VHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
++VC CGKAF + ++LK HQ HT + P++C EGC KRFSL L+ H ++H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 70 PYVCPFDGCNKKFAQSTNLKSHI 92
D C+ T H+
Sbjct: 61 CKKD--DSCSFVGKTWTLYLKHV 81
Score = 26.4 bits (59), Expect = 3.8
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 2 RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ 32
++H H G C + +H
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 102 bits (258), Expect = 8e-28
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
H C CGK F KLK H HTG KP++C + C + +L H+RIH
Sbjct: 3 SG-SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIH 59
Query: 66 TGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +RP+ C C S+ L H+ +H
Sbjct: 60 SDERPFKC--QICPYASRNSSQLTVHLRSH 87
Score = 91.3 bits (228), Expect = 2e-23
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
L TH R H C C A +SS L +H +H+ E+PF+C + C
Sbjct: 23 KLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQ 79
Query: 58 LRTHVRIHTGDRPYVC 73
L H+R HTGD
Sbjct: 80 LTVHLRSHTGDSGPSS 95
Score = 55.9 bits (136), Expect = 2e-10
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 2 RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
KHL H R C C A SS+L H HTG+
Sbjct: 53 NKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 101 bits (255), Expect = 1e-27
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 6 HTHGPRVHVC--AECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 62
+ G C CG+ F L H+ H +K F C CGK F+ +L+ H+
Sbjct: 2 SS-GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 63 RIHTGDRPYVCPFDGC 78
++H+ R Y+C F G
Sbjct: 61 KLHSDTRDYICEFSGP 76
Score = 95.3 bits (238), Expect = 4e-25
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHIL 93
+G C F GCG+ FS L H + H + + CP C K F +LK H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 94 TH 95
H
Sbjct: 62 LH 63
Score = 28.3 bits (64), Expect = 0.77
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 2 RKHLHTH-GPRVHVCAECGKAF 22
++H+ H R ++C G +
Sbjct: 57 KEHMKLHSDTRDYICEFSGPSS 78
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 101 bits (255), Expect = 1e-27
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 74
C CGK+F SS L H L+H+ +P+ C + CGKRF +++ H IHTG++P+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKC- 60
Query: 75 FDGCNKKFAQSTNLKSHILTH 95
C K F+QS+NL +H H
Sbjct: 61 -QVCGKAFSQSSNLITHSRKH 80
Score = 81.7 bits (203), Expect = 5e-20
Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
L TH +H C CGK F + S +K+H +HTGEKP +C + CGK FS N
Sbjct: 16 TLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSN 72
Query: 58 LRTHVRIHTG 67
L TH R HTG
Sbjct: 73 LITHSRKHTG 82
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 100 bits (253), Expect = 7e-27
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
+C CG+ F +S L H+ HT E+P+ C + C K F +
Sbjct: 4 GSSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDH 60
Query: 58 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
LR H IH+ ++P+ C C K F QS L H H
Sbjct: 61 LRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLH 96
Score = 89.4 bits (223), Expect = 1e-22
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
+L H R H C C KAF L+ H+ +H+ EKPF+C + CGK F
Sbjct: 32 NLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRT 88
Query: 58 LRTHVRIHTGDRPYVC 73
L H +H
Sbjct: 89 LAVHKTLHMQTSSPTA 104
Score = 84.4 bits (210), Expect = 9e-21
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 25 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 84
SS +L +K F C F CG+ F+ +NL H R HT +RPY C D C+K F +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRR 57
Query: 85 STNLKSHILTH 95
+L+ H H
Sbjct: 58 QDHLRDHRYIH 68
Score = 57.4 bits (140), Expect = 6e-11
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
HL H +H C ECGK F +S L H+ +H
Sbjct: 60 HLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 102 bits (258), Expect = 1e-26
Identities = 46/98 (46%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
HL H R H C ECGK+F + L RHQ HTGEKP++C CGK FS N
Sbjct: 36 HLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP--ECGKSFSQRAN 92
Query: 58 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
LR H R HTG++PY C C K F+Q +L++H TH
Sbjct: 93 LRAHQRTHTGEKPYAC--PECGKSFSQLAHLRAHQRTH 128
Score = 102 bits (257), Expect = 1e-26
Identities = 40/98 (40%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
+ C ECGK+F S L HQ HTGEKP++C CGK FS +
Sbjct: 8 SSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKD 64
Query: 58 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
L H R HTG++PY C C K F+Q NL++H TH
Sbjct: 65 LTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTH 100
Score = 101 bits (255), Expect = 3e-26
Identities = 43/98 (43%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
+L H R H C ECGK+F + + L+ HQ HTGEKP++C CGK FS + N
Sbjct: 92 NLRAHQ-RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDN 148
Query: 58 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
L TH R HTG++PY C C K F++ L H TH
Sbjct: 149 LHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTH 184
Score = 85.6 bits (213), Expect = 3e-20
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 21 AFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK 80
+ SS + GEKP+ C E CGK FS +L H R HTG++PY C C K
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACP-E-CGKSFSRSDHLAEHQRTHTGEKPYKC--PECGK 57
Query: 81 KFAQSTNLKSHILTH 95
F+ +L H TH
Sbjct: 58 SFSDKKDLTRHQRTH 72
Score = 82.9 bits (206), Expect = 3e-19
Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
HL H R H C ECGK+F L HQ HTGEKP++C E CGK FS
Sbjct: 120 HLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP-E-CGKSFSRRDA 176
Query: 58 LRTHVRIHTGDRP 70
L H R HTG +
Sbjct: 177 LNVHQRTHTGKKT 189
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 99.1 bits (248), Expect = 2e-26
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
+ G C CGK F + L RH+L H+GEKP+ C CG RF + HVR H
Sbjct: 2 SS-GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSH 58
Query: 66 TG--DRPYVCPFDGCNKKFAQSTNLKSHI 92
G +PY+C C K F++ +L HI
Sbjct: 59 DGSVGKPYIC--QSCGKGFSRPDHLNGHI 85
Score = 74.1 bits (183), Expect = 6e-17
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 94
+G C E CGK F ++L H H+G++PY CP C +F + + H+ +
Sbjct: 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRS 57
Query: 95 H 95
H
Sbjct: 58 H 58
Score = 72.1 bits (178), Expect = 3e-16
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGE--KPFQCTFEGCGKRFSLD 55
HL+ H H C CG F ++ H H G KP+ C + CGK FS
Sbjct: 22 HLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRP 78
Query: 56 FNLRTHV-RIHTG 67
+L H+ ++H+G
Sbjct: 79 DHLNGHIKQVHSG 91
Score = 44.0 bits (105), Expect = 3e-06
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 4 HLHTHGPRVH--------VCAECGKAFVESSKLKRH-QLVHTGEK 39
+ H R H +C CGK F L H + VH+G
Sbjct: 50 RMSYH-VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 96.0 bits (240), Expect = 6e-25
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQ---LVHTGEKPFQCTFEGCGKRFSL 54
+L H R H C +CGK + L H+ ++ E+ F C+ C + F
Sbjct: 22 YLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRR 78
Query: 55 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 91
LR H+ HTG+ PY C C+++F Q +L+SH
Sbjct: 79 RMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSH 113
Score = 94.5 bits (236), Expect = 3e-24
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR---IHTGDRPY 71
C C K F+ LK H HTGEKPF+C CGK + NL H ++ ++ +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 72 VCPFDGCNKKFAQSTNLKSHILTH 95
C C + F + L+ H+++H
Sbjct: 68 TC--SVCQETFRRRMELRLHMVSH 89
Score = 76.4 bits (189), Expect = 1e-17
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRI 64
+ +V C+ C + F +L+ H + HTGE P++C+ C ++F +L++H +++
Sbjct: 61 NR-SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCS--SCSQQFMQKKDLQSHMIKL 117
Query: 65 HTG 67
H+G
Sbjct: 118 HSG 120
Score = 44.4 bits (106), Expect = 4e-06
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQL-VHTGEK 39
L H H C+ C + F++ L+ H + +H+G
Sbjct: 81 ELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 94.9 bits (237), Expect = 7e-25
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 74
C C + F S L H HTGEKPF C + CG++F+ + H I P +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQHI-LPILE- 61
Query: 75 FDGCNKKFAQSTNLKSHIL---TH 95
D + +++ +L++ +
Sbjct: 62 -DKVEELLSKNYHLENEVARLKKL 84
Score = 71.4 bits (176), Expect = 4e-16
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 57
HL TH R H C CG+ F S + KRH+ + P + + S +++
Sbjct: 18 HLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE--DKVEELLSKNYH 73
Query: 58 LRTHV---RIHTGDR 69
L V + G+R
Sbjct: 74 LENEVARLKKLVGER 88
Score = 43.6 bits (104), Expect = 4e-06
Identities = 4/41 (9%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 2 RKHLHTHGPRVHVCAECGKAFVESSKLKRHQL---VHTGEK 39
++H + + + ++ L+ GE+
Sbjct: 48 KRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 95.2 bits (238), Expect = 9e-25
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 17 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 76
+CGK+F S+ RH +H G +P+ C CGK+F + +L H++IHTG +PY C +
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGIKPYEC--N 69
Query: 77 GCNKKFAQSTNLKSHILTHAK 97
C K+F + H+ + K
Sbjct: 70 ICAKRFMWRDSFHRHVTSCTK 90
Score = 90.6 bits (226), Expect = 5e-23
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 2 RKHLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLD 55
+ H +H C CGK F L H +HTG KP++C C KRF
Sbjct: 22 KSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWR 78
Query: 56 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 90
+ H + + + Y + +++ S
Sbjct: 79 DSF--HRHVTSCTKSYEA--AKAEQNTTEASGPSS 109
Score = 72.1 bits (178), Expect = 4e-16
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 34 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 93
+G+K + C CGK F+ H+ +H G RPY C C KKF +L H+
Sbjct: 4 GSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGC--GVCGKKFKMKHHLVGHMK 58
Query: 94 TH 95
H
Sbjct: 59 IH 60
Score = 38.2 bits (90), Expect = 5e-04
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+GD+ Y C C K F + H+ H
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMH 32
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 92.4 bits (230), Expect = 3e-24
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 25 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 84
SS Q+ + + C+ GCGK + +L+ H R HTG++P+ C + GC ++FA+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 85 STNLKSHILTH 95
S L H TH
Sbjct: 62 SDELSRHRRTH 72
Score = 79.7 bits (197), Expect = 3e-19
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 9 GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
R H+C CGK + +SS LK H HTGEKPF C+++GC +RF+ L H R H
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 88.7 bits (221), Expect = 1e-22
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 1 MRKHLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 54
M H H H + C C +F L H+ VHTGEKP++C CG +F+
Sbjct: 1 MGHHHHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNR 57
Query: 55 DFNLRTHVRIHTGDRPY 71
NL+TH RIH+G++PY
Sbjct: 58 PANLKTHTRIHSGEKPY 74
Score = 83.7 bits (208), Expect = 7e-21
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 25 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 84
H + +KP++C + C F NL +H +HTG++PY C + C +F +
Sbjct: 2 GHHHHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNR 57
Query: 85 STNLKSHILTH 95
NLK+H H
Sbjct: 58 PANLKTHTRIH 68
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 87.7 bits (218), Expect = 2e-22
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 25 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 84
+ L + +P+ C E C +RFS L H+RIHTG +P+ C C + F++
Sbjct: 6 MNNLLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSR 61
Query: 85 STNLKSHILTH 95
S +L +HI TH
Sbjct: 62 SDHLTTHIRTH 72
Score = 68.1 bits (167), Expect = 5e-15
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 MRKHLHTHGPRVHVCA--ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 58
+ ++ R + C C + F S +L RH +HTG+KPFQC C + FS +L
Sbjct: 9 LLNYVVPK-MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHL 65
Query: 59 RTHVRIHT 66
TH+R HT
Sbjct: 66 TTHIRTHT 73
Score = 49.2 bits (118), Expect = 3e-08
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 57 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
NL +V RPY CP + C+++F++S L HI H K
Sbjct: 8 NLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQK 48
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 86.8 bits (216), Expect = 6e-22
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 27 KLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG--DRPYVCPFDGCNKKFAQ 84
H+GEKP++C C RF+ ++ H+ + CP C+ A+
Sbjct: 2 SSGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIAR 57
Query: 85 STNLKSHILTH 95
++L H+
Sbjct: 58 KSDLGVHLRKQ 68
Score = 81.4 bits (202), Expect = 5e-20
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 2 RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE--KPFQCTFEGCGKRFSLDFNL 58
TH G + + C C F +S +K H L E F C C + +L
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDL 61
Query: 59 RTHVR-IHTGDRPY 71
H+R H+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 84.8 bits (211), Expect = 3e-21
Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
H+ G + + C ECGKAF SS L +HQ VHTGEKP++C CGK FS + L H RIH
Sbjct: 9 HS-GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIH 65
Query: 66 TGDRPY 71
T
Sbjct: 66 TSGPSS 71
Score = 76.4 bits (189), Expect = 3e-18
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 28 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 87
+H+GEKP+ C CGK FS L H R+HTG++PY C C K F+Q++
Sbjct: 2 SSGSSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSG 57
Query: 88 LKSHILTH 95
L +H H
Sbjct: 58 LINHQRIH 65
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 83.6 bits (208), Expect = 9e-21
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 2 RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 60
+ R + C ECGK+F SS L +H+ HTGEKP++C + CGK F +L
Sbjct: 7 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIG 64
Query: 61 HVRIHTGDRPY 71
H R+HTG P
Sbjct: 65 HHRVHTGSGPS 75
Score = 80.9 bits (201), Expect = 9e-20
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 25 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 84
S R + + ++C + CGK FS +L H R HTG++PY C D C K F Q
Sbjct: 3 SGSSGRSEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQ 58
Query: 85 STNLKSHILTH 95
++L H H
Sbjct: 59 RSHLIGHHRVH 69
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 82.6 bits (205), Expect = 2e-20
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 32 QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI--HTGDRPYVCPFDGCNKKFAQSTNLK 89
+ GE ++C C + ++ N H + Y CPF C K+F + N+
Sbjct: 2 EFTKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMT 57
Query: 90 SHILTHAK 97
+H+ K
Sbjct: 58 AHVKIIHK 65
Score = 74.1 bits (183), Expect = 2e-17
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLV--HTGEKPFQCTFEGCGKRFSLDFNLRTHVR 63
G + C C + + S RH + K + C F C K F+ N+ HV+
Sbjct: 5 KE-GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVK 61
Query: 64 IHTG 67
I
Sbjct: 62 IIHK 65
Score = 41.0 bits (97), Expect = 2e-05
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 1 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTG 37
+V+ C C K F + H +
Sbjct: 30 YVTSHKR-NVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 82.6 bits (205), Expect = 3e-20
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 15/89 (16%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGE----KPFQCTFEGCGKRFS 53
+ G R H C+ C K F + L H + F C+ CGK F+
Sbjct: 2 SSGSSG-RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFT 58
Query: 54 LDFNLRTHVRIHTGDRPYVCPFDGCNKKF 82
+ H G +
Sbjct: 59 RRNTMARHADNCAGPDGVEG--ENSGPSS 85
Score = 73.3 bits (181), Expect = 6e-17
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 28 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG----DRPYVCPFDGCNKKFA 83
HTGEKP+ C+ C K F L H + + +VC C K F
Sbjct: 3 SGSSGRTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFT 58
Query: 84 QSTNLKSHILTH 95
+ + H
Sbjct: 59 RRNTMARHADNC 70
Score = 59.5 bits (145), Expect = 8e-12
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 2 RKHLHTHGPRVH----------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR 51
++ L H + + VC++CGK F + + RH G + E G
Sbjct: 28 KQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEG--ENSGPS 84
Query: 52 F 52
Sbjct: 85 S 85
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 57 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ + R HTG++PY C C+K F Q L H +
Sbjct: 2 SSGSSGRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRY 38
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 79.9 bits (198), Expect = 2e-19
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 34 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 93
+ P +C+ C S LR H RIH DRP+ C + C+ Q +NL H+
Sbjct: 3 SGSSGHPEKCSE--CSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMK 58
Query: 94 TH 95
Sbjct: 59 KF 60
Score = 78.3 bits (194), Expect = 7e-19
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 74
C+EC + + L+ H+ +H ++PF+C C NL H++ GD
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 39.4 bits (93), Expect = 6e-05
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ P C C+ + L+ H H
Sbjct: 2 SSGSSGHPEKC--SECSYSCSSKAALRIHERIH 32
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 79.0 bits (195), Expect = 5e-19
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT---GDRPYVCPFDGCNKKFAQSTNLKSH 91
+G QC CG +L H R H + C F C K+F + ++ +H
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAH 57
Query: 92 ILTHAKAKLLK 102
A LL
Sbjct: 58 RSKSHPALLLA 68
Score = 70.5 bits (173), Expect = 6e-16
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHT---GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
C CG + + L HQ H F C F CGKRF ++ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPAL 65
Query: 70 PYVCP 74
Sbjct: 66 LLAPQ 70
Score = 46.6 bits (111), Expect = 3e-07
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 1 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF 52
RKH T C CGK F + + H+ E G
Sbjct: 27 QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ-ESSGPSS 77
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 77.9 bits (193), Expect = 8e-19
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGD 68
VC C +AF LKRH HT EKP+ C C + F+ L H +IH+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57
Score = 60.2 bits (147), Expect = 2e-12
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 91
+ F C C + F+ +L+ H R HT ++PY C CN+ F + L H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRH 49
Score = 42.5 bits (101), Expect = 5e-06
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 4 HLHTHGPRVH------VCAECGKAFVESSKLKRH-QLVHTGEK 39
HL H R H C C +AF L RH Q +H+G
Sbjct: 17 HLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 29.4 bits (67), Expect = 0.23
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
R +VC C + FA+ +LK H +H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 72.7 bits (179), Expect = 5e-17
Identities = 20/43 (46%), Positives = 23/43 (53%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKPF CT+ GCG RFS L H R H+G +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 60.0 bits (146), Expect = 2e-12
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+ TG++P+ C + GC +F++S L H +H+ K
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
Score = 53.5 bits (129), Expect = 5e-10
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 4 HLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C CG F S +L RH+ H+G KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 65.6 bits (161), Expect = 2e-14
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 71
GEKP+ C E CG RF L++H+RIHTG P
Sbjct: 2 SSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 49.4 bits (119), Expect = 9e-09
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 41
+ G + + C CG F LK H +HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
G++PY C + C +F LKSH+ H
Sbjct: 2 SSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIH 34
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 65.2 bits (160), Expect = 2e-14
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKPF+C CGK FS+ L TH RIHTG++P
Sbjct: 2 SSGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 2e-11
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + CAECGK+F SS+L HQ +HTGEKP +
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P+ C C K F+ S+ L +H H
Sbjct: 2 SSGSSGTGEKPFEC--AECGKSFSISSQLATHQRIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 3e-14
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C+ CGK F+ L H + HTG+R
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C++CGKAF S L HQ HTGE+ +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F + + L H +H
Sbjct: 2 SSGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 3e-14
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKPF+C+ C K F+ NL H R HTG++P
Sbjct: 2 SSGSSGTGEKPFECS--ECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C+EC KAF S L HQ HTGEKP +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 40.5 bits (96), Expect = 2e-05
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P+ C C K F +NL H TH
Sbjct: 2 SSGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 64.9 bits (159), Expect = 4e-14
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TG KP+ C+ C K FSL L H R HTG +P
Sbjct: 2 SSGSSGTGVKPYGCS--QCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C++C K F S+L HQ HTG KP +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG +PY C C K F+ + L H +H
Sbjct: 2 SSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 64.5 bits (158), Expect = 4e-14
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP+ C + CGK F L H R+H+G++P
Sbjct: 2 SSGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
T G + + C ECGK+F +S L +HQ VH+GEKP +
Sbjct: 7 GT-GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F ++ L H H
Sbjct: 2 SSGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 4e-14
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKPF+C E CGKRF+ + L +H R+HTG++P
Sbjct: 2 SSGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C ECGK F ++S+L HQ VHTGEKP +
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++P+ C + C K+F Q++ L SH H
Sbjct: 2 SSGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 4e-14
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C E CGK ++ FNL H ++HTG+RP
Sbjct: 3 SGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C +CGK + L HQ VHTGE+P +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K + NL H H
Sbjct: 2 SSGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 6e-14
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKPF+C + CGK F + +L +H+RIHTG++P
Sbjct: 2 SSGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C ECGKAF ++ L H +HTGEKP +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++P+ C C K F Q+ +L SH+ H
Sbjct: 2 SSGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.0 bits (157), Expect = 7e-14
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGE+P+ CT CGK F+ NL H +IHTG++P
Sbjct: 2 SSGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
T G R ++C CGKAF + S L +HQ +HTGEKP
Sbjct: 7 GT-GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 40.9 bits (97), Expect = 1e-05
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG+RPY+C C K F +NL H H
Sbjct: 2 SSGSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 8e-14
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP+ C E CGK F D L+ H RIHTG++P
Sbjct: 2 SSGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGKAF+ S+L+ HQ +HTGEKP +
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F + L+ H H
Sbjct: 2 SSGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 63.7 bits (156), Expect = 8e-14
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 71
GEKP++C E CG RF +LR HV IHTG P
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 51.8 bits (125), Expect = 1e-09
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 41
+ G + + C CG FV+ + L+ H L+HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
G++PY C + C +F Q +L++H+L H
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIH 34
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 8e-14
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKP+ C + CGK F L L H RIHTG++P
Sbjct: 2 SSGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + +VC CGKAF S++L RHQ +HTGEKP +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 7e-06
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++PYVC D C K F S L H H
Sbjct: 2 SSGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 9e-14
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F+ NL H RIHTG++P
Sbjct: 2 SSGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGKAF + + L +HQ +HTGEKP +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K FAQ NL H H
Sbjct: 2 SSGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGE PF C+ CGK F+ NL H +IHTG+RP
Sbjct: 3 SGSSGTGENPFICS--ECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G +C+ECGK F + L HQ +HTGE+P +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG+ P++C C K F TNL H H
Sbjct: 2 SSGSSGTGENPFIC--SECGKVFTHKTNLIIHQKIH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKPF+C E CGK F + +H R H+G++P
Sbjct: 3 SGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 49
+ G + C ECGK F +S+ HQ H+GEKP + G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS---SG 46
Score = 41.4 bits (98), Expect = 9e-06
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++P+ C + C K F ++ SH +H
Sbjct: 2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKPF+C CGK ++ +L H R+HTG++P
Sbjct: 2 SSGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C ECGK++ + L +HQ VHTGEKP +
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P+ C C K + Q +L H H
Sbjct: 2 SSGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C+ CGK F+ LR H + HTG+R
Sbjct: 3 SGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C++CGK+F S+L+ HQ HTGE+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F + L+ H H
Sbjct: 2 SSGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKPFQC E CGKRF+ + +L +H R+HTG++P
Sbjct: 2 SSGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C ECGK F ++S L HQ VHTGEKP +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++P+ C + C K+F Q+++L SH H
Sbjct: 2 SSGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TG KP+ C CGK FS+ +L TH IHTG++P
Sbjct: 2 SSGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQC 43
C ECGKAF S L HQ++HTGEKP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG +PY+C + C K F+ ++L +H + H
Sbjct: 2 SSGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
GEKP+ C+ CGK FS L H+R H+G++P
Sbjct: 2 SSGSSGAGEKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C+ECGKAF S L H H+GEKP +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 9e-06
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ G++PY C C K F+ + L H+ TH
Sbjct: 2 SSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 1e-13
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+ EKP++C E CGK ++ NL H R+H G++
Sbjct: 3 SGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 54.0 bits (131), Expect = 3e-10
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ + + C +CGK + L HQ VH GEK +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ + ++PY C + C K + + NL H H
Sbjct: 2 SSGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 1e-13
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F+ NL TH +IHTG++P
Sbjct: 2 SSGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
T G + + CAECGKAF + S L HQ +HTGEKP
Sbjct: 7 GT-GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F +NL +H H
Sbjct: 2 SSGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.9 bits (154), Expect = 2e-13
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TG KP+ C CGK F L H R HTG+
Sbjct: 2 SSGSSGTGMKPYVCN--ECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + +VC ECGKAF S L H HTGE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.9 bits (97), Expect = 1e-05
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG +PYVC + C K F + L H TH
Sbjct: 2 SSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 62.9 bits (154), Expect = 2e-13
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TG+KPF+CT CGK F NL TH RIHTG++
Sbjct: 3 SGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C CGK+F L HQ +HTGEK +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG +P+ C C K F NL +H H
Sbjct: 2 SSGSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP +C CGK FS + L H RIHTG+ P
Sbjct: 2 SSGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + H C ECGK+F +S+L HQ +HTGE P +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P+ C C K F+ ++ L H H
Sbjct: 2 SSGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGE P++C CGK FS + L +H R H G++P
Sbjct: 2 SSGSSGTGENPYECH--ECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C ECGKAF +L HQ H GEKP +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG+ PY C C K F++ L SH TH
Sbjct: 2 SSGSSGTGENPYEC--HECGKAFSRKYQLISHQRTH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKP++C CGK F +L H RIHTG RP
Sbjct: 2 SSGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C+ECGKAF + L H+ +HTG +P +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++PY C C K F + T+L H H
Sbjct: 2 SSGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKP++C CGK F+ + +L H RIHTG++P
Sbjct: 2 SSGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 54.0 bits (131), Expect = 2e-10
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C ECGK F ++S L H +HTGEKP +
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++PY C + C K F Q+++L +H H
Sbjct: 2 SSGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C + CGK F + +L H +H+G+RP
Sbjct: 2 SSGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C CGKAF SS L +H VH+GE+P +
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
TG++PY C C K F S++L H H
Sbjct: 3 SGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F + +L H IHTG++P
Sbjct: 2 SSGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 54.0 bits (131), Expect = 3e-10
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C ECGK F +S L RHQL+HTGEKP +
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 38.2 bits (90), Expect = 1e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F ++++L H L H
Sbjct: 2 SSGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 62.6 bits (153), Expect = 2e-13
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C E CGK F +L TH +HTG++P
Sbjct: 3 SGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C ECGK F+ L H +VHTGEKP +
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F +L +H + H
Sbjct: 2 SSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP+ C CGK F++ NL H +IHT +P
Sbjct: 3 SGSSGTGEKPYICA--ECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
T G + ++CAECGKAF S L +HQ +HT +KP +
Sbjct: 7 GT-GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY+C C K F +NL H H
Sbjct: 2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKPF+C CGK FS L H ++HTG++P
Sbjct: 2 SSGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C ECGK F S L H +HTGEKP +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P+ C C K F++ + L H H
Sbjct: 2 SSGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F+ + +L H RIHTG +P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGK F ++S L HQ +HTG KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F Q+++L +H H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 2e-13
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKPFQC + CG FS +L H+R H P
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 53.0 bits (128), Expect = 5e-10
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + C ECG F S L +H H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P+ C C F+ S +L H+ +H
Sbjct: 2 SSGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGE+P +C CGK F +L H RIHTG++P
Sbjct: 2 SSGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G R H C ECGK+F++S+ L +HQ +HTGEKP +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG+RP+ C + C K F QS +L H H
Sbjct: 2 SSGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK FS L H RIHTG++P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGKAF ++SKL RHQ +HTGEKP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F+Q++ L H H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
GEK ++C + CGK FS +L+TH R+HTG++P
Sbjct: 3 SGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C CGK F +SS L+ HQ VHTGEKP +
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ G++ Y C D C K+F+QS++L++H H
Sbjct: 2 SSGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKP++C CGK + +L H R+HTG++
Sbjct: 3 SGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGK + L HQ VHTGEK +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++PY C C K + + +L H H
Sbjct: 2 SSGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGE+ ++C+ CGK F+ L H RIHTG++P
Sbjct: 2 SSGSSGTGERHYECS--ECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 2e-11
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G R + C+ECGKAF S L HQ +HTGEKP +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG+R Y C C K FA+ + L H H
Sbjct: 2 SSGSSGTGERHYEC--SECGKAFARKSTLIMHQRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F+ + +L H IHTG++P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 54.0 bits (131), Expect = 2e-10
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C ECGK F ++S L RH+ +HTGEKP +
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F Q+++L H H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C C K F+ +L H + HTG++P
Sbjct: 2 SSGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C C KAF + + L +HQ HTGEKP +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C+K F Q +L H TH
Sbjct: 2 SSGSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.1 bits (152), Expect = 3e-13
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C C K F+ NL H R HTG+
Sbjct: 3 SGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + + C EC KAF S L HQ HTGE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 41.3 bits (98), Expect = 7e-06
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F +NL H TH
Sbjct: 2 SSGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 3e-13
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F+ L H +IHTG++P
Sbjct: 2 SSGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C+ CGK+F + S+L HQ +HTGEKP +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F + + L H H
Sbjct: 2 SSGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 3e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEK + C + CGK FS L H R+H+G++P
Sbjct: 3 SGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G +++ C ECGK+F + L +H+ +H+GEKP +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++ Y C C K F+++ L H H
Sbjct: 2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 62.2 bits (152), Expect = 3e-13
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TG++P++C CGK F +L H R HTG++P
Sbjct: 2 SSGSSGTGQRPYECI--ECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 47
+ G R + C ECGKAF S L H+ HTGEKP + G
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS-SG 46
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG RPY C C K F ++L H +H
Sbjct: 2 SSGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 3e-13
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F + L H RIHTG++P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C ECGK F +S L RHQ +HTGEKP +
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F ++ L H H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 3e-13
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C+ CGK F L H RIHTG+ P
Sbjct: 3 SGSSGTGEKPYECS--DCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + + C++CGK+F++ S+L HQ +HTGE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F + + L H H
Sbjct: 2 SSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 3e-13
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F +L H H+G++P
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGKAF S L HQ H+GEKP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 39.1 bits (92), Expect = 5e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F ++L H TH
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFRARSSLAIHQATH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 3e-13
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK FS+ +L TH IHTG +P
Sbjct: 2 SSGSSGTGEKPYECN--QCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C +CGKAF S L HQ +HTG+KP +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 38.3 bits (90), Expect = 9e-05
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F+ ++L +H H
Sbjct: 2 SSGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 62.1 bits (152), Expect = 4e-13
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C + CGK FS +L H R+HTG++P
Sbjct: 2 SSGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGKAF +++ L +HQ VHTGEKP +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F+Q+T+L H H
Sbjct: 2 SSGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEK ++C CGK FS + L H +IHTG++P
Sbjct: 2 SSGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGK F +S+L +HQ +HTGEKP +
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 8e-05
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++ Y C + C K F++++ L H H
Sbjct: 2 SSGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 4e-13
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C+ CGK FS +L H RIH+G +P
Sbjct: 2 SSGSSGTGEKPYECS--VCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C+ CGKAF L HQ +H+G+KP +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 38.6 bits (91), Expect = 7e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
TG++PY C C K F+ +L H H
Sbjct: 3 SGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 4e-13
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TG K F+CT CGK F+ L H +IHTG++P
Sbjct: 2 SSGSSGTGGKHFECT--ECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
T G + C ECGKAF S L HQ +HTGEKP +
Sbjct: 7 GT-GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 7e-05
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG + + C C K F + + L H H
Sbjct: 2 SSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 5e-13
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKPF C CGK FS L H RIHTG++P
Sbjct: 3 SGSSGTGEKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C +CGKAF + L +H+ +HTGEKP +
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P+ C C K F+ L H H
Sbjct: 2 SSGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 6e-13
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F NL TH IHTG++P
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C ECGKAF S L HQ++HTGEKP +
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 5e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F +NL +H + H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 6e-13
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKPF+C + CGK F L H +HT ++P
Sbjct: 3 SGSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C CGK+F S+L RH +VHT EKP +
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P+ C D C K F + L H + H
Sbjct: 2 SSGSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 6e-13
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C + C K F +L H RIHTG++P
Sbjct: 3 SGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C C K+F S L HQ +HTGEKP +
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C D C+K F ++L H H
Sbjct: 2 SSGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 61.4 bits (150), Expect = 6e-13
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKP++C CGK F L H R H G
Sbjct: 2 SSGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + + C ECGKAF+ S L H+ H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++PY C + C K F + L H TH
Sbjct: 2 SSGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 7e-13
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP+ C CGK F L +L H+R+HT +
Sbjct: 2 SSGSSGTGEKPYSCN--VCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 55.6 bits (135), Expect = 6e-11
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C CGKAFV S+ L +H VHT E +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
TG++PY C + C K F S +L H+ H
Sbjct: 3 SGSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 8e-13
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP +CT CGK F L H R H D+
Sbjct: 2 SSGSSGTGEKPCKCT--ECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C ECGKAF S+L HQ H +K +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 35.6 bits (83), Expect = 9e-04
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++P C C K F + L H TH
Sbjct: 2 SSGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.1 bits (149), Expect = 8e-13
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F + + H R+HTG RP
Sbjct: 3 SGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGKAF ++S +HQ +HTG++P +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 39.5 bits (93), Expect = 4e-05
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C C K F +++ H H
Sbjct: 2 SSGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 8e-13
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
G+K F+C C K F+ +L H RIHTG++P
Sbjct: 3 SGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C EC K F +SS L HQ +HTGEKP +
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ G + + C + C K F QS++L H H
Sbjct: 2 SSGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 61.0 bits (149), Expect = 9e-13
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
GEK ++C C FS +LR H +H G++P
Sbjct: 3 SGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C EC F ++S L+ HQ VH GEKP +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ G++ + C C+ F+Q+++L+ H H
Sbjct: 2 SSGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP+ C CGK F +L H RIHTG++P
Sbjct: 3 SGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + ++C ECGK+F++ S L RH+ +HTGEKP +
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 7e-06
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY+C + C K F Q ++L H H
Sbjct: 2 SSGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKP+ C CGK FS L H R HTG++P
Sbjct: 3 SGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGK F + S L HQ HTGEKP +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G++PY C + C K F+Q + L +H TH
Sbjct: 2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TG KP+QC CGK FS L H R+HTG++P
Sbjct: 3 SGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGKAF ++SKL RHQ VHTGEKP +
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG +PY C + C K F+Q++ L H H
Sbjct: 2 SSGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVH 35
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 62.3 bits (151), Expect = 1e-12
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 8 HGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKP---FQCTFEGC---GKRFSLDFNLRT 60
C + F +L H + H G C +E C GK F + L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 61 HVRIHTGDRPYVC 73
H+R+HTG++
Sbjct: 81 HIRVHTGEKSGPS 93
Score = 52.3 bits (125), Expect = 4e-09
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 14/57 (24%)
Query: 2 RKHLHTHGPRVHV--------------CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
L TH HV C GK+F KL H VHTGEK +
Sbjct: 38 MHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 49.6 bits (118), Expect = 3e-08
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 34 VHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRP---YVCPFDGC---NKKFAQST 86
+ + + C + FS L THV H G +VC ++ C K F
Sbjct: 19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 87 NLKSHILTH 95
L +HI H
Sbjct: 77 KLVNHIRVH 85
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGE+ ++C CGK F L H RIH G++P
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G R + C+ECGKAF++ S L HQ +H GEKP +
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG+R Y C C K F Q + L H H
Sbjct: 2 SSGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
G P++C+ C K FS L H R+HT ++P
Sbjct: 3 SGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C++C K+F +L HQ +HT EKP +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ G PY C C K F+ L H H
Sbjct: 2 SSGSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
GEKP+QC CGK FS + L H HT ++P
Sbjct: 3 SGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C+ECGK+F S +L +H + HT EKP +
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 36.8 bits (86), Expect = 3e-04
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ G++PY C C K F+ S L H +TH
Sbjct: 2 SSGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C + C K FS +L H R+H+G++P
Sbjct: 3 SGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C C KAF + L +HQ VH+GEKP +
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C D C K F+ +L H H
Sbjct: 2 SSGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GE+PF+C CGK F +L H+R+H+ ++
Sbjct: 2 SSGSSGSGERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G R C ECGK F S L H +H+ EK +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 36.0 bits (84), Expect = 6e-04
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G+RP+ C + C K F + ++L H+ H
Sbjct: 2 SSGSSGSGERPFKC--NECGKGFGRRSHLAGHLRLH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GE+P+ C E CGK F +L H++ H ++
Sbjct: 3 SGSSGSGERPYGCN-E-CGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G R + C ECGK F S L H H EK +
Sbjct: 7 GS-GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+G+RPY C + C K F + ++L H+ H
Sbjct: 3 SGSSGSGERPYGC--NECGKNFGRHSHLIEHLKRH 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 60.3 bits (147), Expect = 2e-12
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKFAQ 84
+ KP+ C + CGK FS +L H+ ++HT +RP+ C +
Sbjct: 3 SGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSS 53
Score = 59.1 bits (144), Expect = 5e-12
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 15 CAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFS 53
C CGK F L H + VHT E+P +C + S
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52
Score = 37.2 bits (87), Expect = 3e-04
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 92
+ + +PY+C C K F++ +L HI
Sbjct: 2 SSGSSGSVGKPYIC--QSCGKGFSRPDHLNGHI 32
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F+ + +L H IHTG++P
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGK F ++S L RH+ +HTGEKP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F Q+++L H H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TG+KP++C CGK F+ + +L H IHTG++P
Sbjct: 3 SGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 54.0 bits (131), Expect = 3e-10
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
C ECGK F ++S L RH+ +HTGEKP +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG +PY C + C K F Q+++L H H
Sbjct: 2 SSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 2e-12
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
GE+ +C CGK F N H RIHTG++P
Sbjct: 2 SSGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G R H C++CGK F+++S +H+ +HTGEKP +
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ G+R + C C K F Q++N H H
Sbjct: 2 SSGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 3e-12
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+G+KP++C + C K F +L H R+HTG+R
Sbjct: 2 SSGSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + + C EC K F++ L +H+ VHTGE+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ +G +PY C C K F Q +L H H
Sbjct: 2 SSGSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGEKP++C CGK F+ + +L H R+HTG +P
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + + C ECGK F ++S L RH+ VHTG KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG++PY C + C K F Q+++L H H
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 58.7 bits (143), Expect = 5e-12
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 71
GEKP++C CGK FS +L H+R+HTG P
Sbjct: 2 SSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 41
+ G + + C +CGKAF + L H VHTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 42.6 bits (101), Expect = 3e-06
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
G++PY C D C K F+Q +L HI H
Sbjct: 2 SSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVH 34
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+ K QC CG+ F+L +L H RIHTG++P
Sbjct: 2 SSGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ + H C ECG+ F S L +HQ +HTGEKP +
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ + + + C C + F ++L H H
Sbjct: 2 SSGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.9 bits (141), Expect = 1e-11
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
TGE P++C CGK FS L +H + H+G
Sbjct: 3 SGSSGTGENPYECC--ECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + C ECGK F +L HQ H+G+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ TG+ PY C C K F++ L SH TH
Sbjct: 2 SSGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 57.6 bits (140), Expect = 1e-11
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCP 74
TG+KP++C CGK F + +L H R HTG++P
Sbjct: 3 SGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 53.3 bits (129), Expect = 5e-10
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCT 44
+ G + + C ECGKAF++++ L RH HTGEKP +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 91
+ TG +PY C C K F Q+T+L H
Sbjct: 2 SSGSSGTGKKPYEC--IECGKAFIQNTSLIRH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 34 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKPF C+ C K FS L H + H ++P
Sbjct: 4 GSSGEKPFGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 54.1 bits (131), Expect = 2e-10
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + C+ C KAF S L HQ H EKP +
Sbjct: 5 SS-GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+G++P+ C C K F+ + L H TH
Sbjct: 3 SGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTH 33
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 57.8 bits (139), Expect = 2e-11
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
++C ECG + S LK+H HT +P+ C C F NL H++ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 50.1 bits (119), Expect = 1e-08
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 48 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
CG R L+ H+R HT RPY C CN F NL H+ + A +K
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 39.7 bits (92), Expect = 5e-05
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
++KH+ TH R + C C +F L +H K
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 32 QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GE P++C+ CGK F+ L +H R H G+
Sbjct: 2 SSGSSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 54.8 bits (133), Expect = 1e-10
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + C+ECGKAF +L HQ H GE
Sbjct: 5 SS-GENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 35.6 bits (83), Expect = 9e-04
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+G+ PY C C K F + L SH TH
Sbjct: 3 SGSSGENPYEC--SECGKAFNRKDQLISHQRTH 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 55.7 bits (135), Expect = 7e-11
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEK C + CGK F LR H R+H G++
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 44
+ G + H C ECGK F S L+ HQ VH GEK +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 38.0 bits (89), Expect = 1e-04
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+G++ + C D C K F + L+ H H
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRIHQRVH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 54.9 bits (132), Expect = 1e-10
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ C CGK F + L RH+L H+GEKP+
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 43.8 bits (103), Expect = 1e-06
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
K C CGK F ++L H H+G++PY
Sbjct: 7 GRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 31.8 bits (72), Expect = 0.020
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+ C + C K F +L H L+H+ K
Sbjct: 5 SSGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSGEK 39
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 71
+G++ ++C CGK F +L H RIHTG P
Sbjct: 5 SSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 50.3 bits (121), Expect = 6e-09
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPF 41
C ECGK+F + L H+ +HTG P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 32.2 bits (74), Expect = 0.014
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSH 91
+G R Y C C K F Q +L H
Sbjct: 3 SGSSGQRVYEC--QECGKSFRQKGSLTLH 29
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.0 bits (128), Expect = 6e-10
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
T K + C CGK F+ F+L H +IHT
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ + + C ECGKAF L RHQ +HT +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.0 bits (84), Expect = 6e-04
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
T + Y C + C K F + +L H H
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 52.7 bits (127), Expect = 7e-10
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 71
GE P+ C CGK F+ +L H R + P
Sbjct: 2 SSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 47.7 bits (114), Expect = 4e-08
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEKPF 41
++C +CGK+F + L HQ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 34.2 bits (79), Expect = 0.002
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
G+ PY+C C K F Q +L H +
Sbjct: 2 SSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSC 34
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 52.2 bits (125), Expect = 1e-09
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+K F+C F GC K F +N+R+H++ H DR
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 44.9 bits (106), Expect = 5e-07
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTH 95
D+ + C F GC K F + N++SHI TH
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 50.3 bits (121), Expect = 5e-09
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+PF CT+ CGKRF+ L+ H R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 42.2 bits (100), Expect = 3e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
RP++C + C K+F +S L+ H TH K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 36.0 bits (84), Expect = 4e-04
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 11 RVHVC--AECGKAFVESSKLKRHQLVHTGEK 39
R +C + CGK F S +L+RH+ HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 50.4 bits (120), Expect = 1e-08
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 25 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 84
S + Q +H G++ +C+ CG F + + +C + C K Q
Sbjct: 3 SGSSGKRQKIHLGDRSQKCS--KCGIIF-------IRRSTLSRRKTPMC--EKCRKDSCQ 51
Query: 85 STNLKSHILTHAKAK 99
L + K
Sbjct: 52 EAALNKDEGNESGKK 66
Score = 49.3 bits (117), Expect = 3e-08
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 1 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 59
K H G R C++CG F+ S + K C E C K + L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMC--EKCRKDSCQEAALN 56
Query: 60 THVRIHTGDRPY 71
+G +
Sbjct: 57 KDEGNESGKKTS 68
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 51.3 bits (122), Expect = 1e-08
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 24 ESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFA 83
S K + + TG F+C C + L H+ TG N
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKR 59
Query: 84 QSTNLKSHILTHAKAKLLKGLFSLKMCPH---ILDEMKRH 120
S K +L + + + C H L ++ H
Sbjct: 60 WSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 49.0 bits (116), Expect = 8e-08
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 8/105 (7%)
Query: 3 KHLHTHGPRVHVCAECGKAFVESSKLKRHQLV--HTGEKPFQCTFEG-CGKRFSLDFNLR 59
+ T G C +C A+ +L H H + + +L
Sbjct: 11 GSIFT-GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL--THAKAKLLK 102
+ C + C F +L H++ H +
Sbjct: 70 EMEGKEDAQKVLKCMY--CGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 28.6 bits (63), Expect = 1.1
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 1 MRKHLHTHGPRVHVCAECGKAFVESSKLKRH--QLVHTGEKPFQ 42
+ +V C CG +F L H + H +
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.1 bits (115), Expect = 3e-08
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 73
+GEKP+ C C + FS + L H ++HT
Sbjct: 5 SSGEKPYSCA--ECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 47.3 bits (113), Expect = 7e-08
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 43
+ G + + CAEC + F ++++L +HQ +HT +
Sbjct: 5 SS-GEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.8 bits (78), Expect = 0.003
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+G++PY C C + F+ + L H H
Sbjct: 3 SGSSGEKPYSCA--ECKETFSDNNRLVQHQKMH 33
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 45.4 bits (108), Expect = 2e-07
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
R TG +P+ CP C++ F++S +L H H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 40.8 bits (96), Expect = 1e-05
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
TG KPFQC C + FS +L H + H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 29.6 bits (67), Expect = 0.10
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 35
G + C +C ++F S L H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 44.3 bits (105), Expect = 6e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+K C +GCGK + +LR H+R HTG+R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 41.2 bits (97), Expect = 7e-06
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ ++C GC K + ++++L++H+ H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 39.6 bits (93), Expect = 2e-05
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 11 RVHVC--AECGKAFVESSKLKRHQLVHTGEK 39
+ H+C CGK + ++S L+ H HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.5 bits (105), Expect = 7e-07
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
GE PF+C+ C + F+ L H R H
Sbjct: 2 SSGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHARKSG 40
Score = 37.9 bits (88), Expect = 2e-04
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKP 40
C++C + F + + L +H+ H +
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 32.1 bits (73), Expect = 0.016
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 96
+ G+ P+ C C++ F Q L H THA
Sbjct: 2 SSGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHA 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 3e-06
Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 41/194 (21%)
Query: 26 SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR----IHTG--DRPYVCPFDGCN 79
+KL ++ LV K + S+ L+ + +H D Y P +
Sbjct: 409 NKLHKYSLVEKQPKESTISI------PSIYLELKVKLENEYALHRSIVDH-YNIPKTFDS 461
Query: 80 KKFAQSTN---LKSHILTHAKAKLLKGLFSLKMCPHI-LD----EMK-RHDGGYEETLHI 130
SHI H K +L + LD E K RHD +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTL--FRMVFLDFRFLEQKIRHDS---TAWNA 516
Query: 131 PSDHVNTV-----YLEETQVLDDHDNSKKYIQ--QKFIKKEEPECQITTHHNMVQI---D 180
+NT+ Y + + D+ ++ + F+ K E + + ++++I
Sbjct: 517 SGSILNTLQQLKFY--KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 181 KSSRKWEQ--KQVQ 192
+ +E+ KQVQ
Sbjct: 575 EDEAIFEEAHKQVQ 588
Score = 39.5 bits (91), Expect = 0.002
Identities = 37/283 (13%), Positives = 70/283 (24%), Gaps = 97/283 (34%)
Query: 27 KLKRHQ--LVHTGEKPFQCTFEGCGKRFSLDFN-LRTHVRIHTGDRPYVCPFDG------ 77
+L+ + L+ G G GK + + C D
Sbjct: 146 ELRPAKNVLID-GVL-------GSGKT-WVALDVCL--------SYKVQCKMDFKIFWLN 188
Query: 78 ---CNKK---FAQSTNLKSHI----------------LTHAKAKLLKGLFSLKMCPH--- 112
CN L I H+ L+ L K +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 113 ILDEM--KRH----DGG---------YEETLHIPSDHVNTVYLEETQVLDDHDNSK---- 153
+L + + + + T + + + L+ + D K
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 154 KYIQQKFIKKEEPECQITTHHNMV-------QIDKSSRKWEQ-KQVQIRTLEGEFSVTMW 205
KY+ + ++ P ++ T + D + W+ K V L ++
Sbjct: 309 KYLDCRP--QDLPR-EVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSL- 363
Query: 206 ASGGTDDDECSNPEFEQEHEYEDC-ILTEQEIKHEPIPGIDLS 247
P E ++ + IP I LS
Sbjct: 364 --------NVLEPA-EYRKMFDRLSVFPP----SAHIPTILLS 393
Score = 30.2 bits (67), Expect = 1.1
Identities = 34/222 (15%), Positives = 75/222 (33%), Gaps = 40/222 (18%)
Query: 100 LLKGLFSLKMCPHILDEMKRHDGGYE--ETLHIPSDHVNTVYLEETQVLDDHDN------ 151
+ K + S + HI+ G TL + + ++EE VL +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPI 98
Query: 152 SKKYIQQKFIKKEEPECQITTHHNMVQIDKSSRKWEQKQVQIRT----LEGEFSVT---M 204
+ Q + + E + +++ K + Q +++R L +V +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 205 WASGGT--------DDDECSNPEFE-------QEHEYEDCILTEQEIKHEPIPGIDLSDP 249
SG T +F+ + E + Q++ ++ ID +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ----ID-PNW 213
Query: 250 KQLAEFASVNNYRPGNNKIKVKRQVGLSAANE---VVPNVQN 288
++ +S R + + +++R + V+ NVQN
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Score = 28.3 bits (62), Expect = 4.1
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 173 HHNMVQIDKSSRKWEQKQVQIRTLEGEFSVTMWASGGTDDDECSNPEFEQEHEYEDCILT 232
HH+ + + +++ K + + E F D+ +C + + + IL+
Sbjct: 3 HHHHMDFETGEHQYQYKDI-LSVFEDAF---------VDNFDCKDVQ-----DMPKSILS 47
Query: 233 EQEIKH 238
++EI H
Sbjct: 48 KEEIDH 53
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 44.2 bits (103), Expect = 5e-06
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 1 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 60
+ + L + VC C F S LK+H E C C K F+ +
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALD 118
Query: 61 HVR 63
HV
Sbjct: 119 HVC 121
Score = 39.9 bits (92), Expect = 2e-04
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 13/106 (12%)
Query: 18 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF--NLRTHVRIHTGDRPYVCPF 75
+ HQL ++ + + L + + +VCP
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 76 DGCNKKFAQSTNLKSHILTHAKAKLLKGLFSLKMCPHILDEMKRHD 121
C F+ S +LK HI K+CP E D
Sbjct: 80 --CLMPFSSSVSLKQHIRYTEHT---------KVCPVCKKEFTSTD 114
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 38.8 bits (91), Expect = 5e-05
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEK 39
R VC C +AF LKRH HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 32.7 bits (75), Expect = 0.006
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+ F C C + F+ +L+ H R HT ++
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 31.1 bits (71), Expect = 0.026
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
R +VC C + FA+ +LK H +H K
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 40.7 bits (94), Expect = 6e-05
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Query: 3 KHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 62
V+ C C + H+ + C + C RF + H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPY--CSLRFFSPELKQEH- 61
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 94
+ C C + F S ++ H +
Sbjct: 62 ESKCEYKKLTCLE--CMRTFKSSFSIWRHQVE 91
Score = 34.1 bits (77), Expect = 0.013
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHTGD 68
VC C F + H+ K C C + F F++ H V +H +
Sbjct: 44 VCPYCSLRFFSPELKQEHE-SKCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQN 96
Score = 27.2 bits (59), Expect = 3.3
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 RKHLHTHGPRVHVCAECGKAFVESSKLKRHQL-VHT 36
++H + C EC + F S + RHQ+ VH
Sbjct: 59 QEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 38.1 bits (88), Expect = 9e-05
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
DRPY C GC+K F ++ +L H +H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 34.2 bits (78), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
++P+ C GC K F + +L H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 25.7 bits (56), Expect = 2.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 17 ECGKAFVESSKLKRHQLVHT 36
C KAFV + L RH+ H
Sbjct: 10 GCDKAFVRNHDLIRHKKSHQ 29
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 35.5 bits (81), Expect = 9e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEK 39
+ +VC C + F + L+RH +HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.3 bits (70), Expect = 0.022
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
KP+ C C ++F+ L+ HVRIHTG++
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGEK 30
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (80), Expect = 0.001
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEK 39
H C ECG+ F + L HQ++H G+K
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.2 bits (54), Expect = 6.0
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+ EK QC CG+ F +L H +H G +
Sbjct: 8 SREKSHQC--RECGEIFFQYVSLIEHQVLHMGQK 39
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 34.9 bits (79), Expect = 0.002
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGE 38
C ECGK F SS L HQ +H GE
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 34.4 bits (78), Expect = 0.002
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+P+ C+ CGKRFSL + TH R+HTG
Sbjct: 2 RPYSCS--VCGKRFSLKHQMETHYRVHTG 28
Score = 28.6 bits (63), Expect = 0.22
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTG 37
R + C+ CGK F +++ H VHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.8 bits (79), Expect = 0.036
Identities = 5/29 (17%), Positives = 6/29 (20%)
Query: 7 THGPRVHVCAECGKAFVESSKLKRHQLVH 35
+ C C L H H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.15
Identities = 7/51 (13%), Positives = 11/51 (21%), Gaps = 2/51 (3%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
+ + +QC C +L HV H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASH 203
Score = 31.4 bits (70), Expect = 0.44
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 60 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ Y C C+ +L +H+ +H
Sbjct: 170 GLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASH 203
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.0 bits (69), Expect = 0.041
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+GEKP+ C CG RF + HVR H G
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
Score = 27.6 bits (60), Expect = 0.62
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 65 HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 98
+G++PY CP C +F + + H+ +H +
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGS 36
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 30.1 bits (67), Expect = 0.060
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEK 39
C CGKAF ++S L H HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.8 bits (61), Expect = 0.44
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
KP QC CGK F+ +L HVR HTG++
Sbjct: 1 KPCQCVM--CGKAFTQASSLIAHVRQHTGEK 29
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 30.0 bits (67), Expect = 0.081
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTH 95
D+P++C GC ++F +L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 30.0 bits (67), Expect = 0.090
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
+KPF CT GCG+RF+ + +L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.086
Identities = 22/135 (16%), Positives = 38/135 (28%), Gaps = 43/135 (31%)
Query: 136 NTVYLEETQVLDDHDNSKKYIQQKFIKKEEPECQITTHHNMVQIDKSSRKWEQKQVQIRT 195
Y EE + L + + IK +++ + K + + I
Sbjct: 166 TDDYFEELRDL--YQTYHVLVGD-LIKFSAETLS-----ELIRTTLDAEKVFTQGLNILE 217
Query: 196 LEGEFSVTMWASGGTDDDECSNPEFEQEHEYEDCILTEQEIKHEPI--PGIDLSDPKQLA 253
W NP + +Y + PI P I + QLA
Sbjct: 218 ---------W---------LENPSNTPDKDY---------LLSIPISCPLIGVI---QLA 247
Query: 254 EF---ASVNNYRPGN 265
+ A + + PG
Sbjct: 248 HYVVTAKLLGFTPGE 262
Score = 31.6 bits (71), Expect = 0.42
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 47/152 (30%)
Query: 120 HDGGYEETLHIPSDHVNTVYLEETQVLDDHDNSKKYIQQKFIKKEEPECQI--------- 170
G E L +P+ + +Q+ + + + F +EP
Sbjct: 12 SHGSLEHVLLVPTAS----FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 171 TTHHNMVQIDKSSRKWEQKQVQIRTLEGEFSVTMWASGGTDDDECSNPEFEQEHEYEDCI 230
+ ++ S + QV + EF E+C
Sbjct: 68 VSS----LVEPSKVG-QFDQV-LNLCLTEF--------------------------ENCY 95
Query: 231 LTEQEIKHEPIPGIDLSDPKQLAEFASV-NNY 261
L +I H + + L + + NY
Sbjct: 96 LEGNDI-HALAAKLLQENDTTLVKTKELIKNY 126
Score = 28.1 bits (62), Expect = 4.9
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 231 LTEQEIKH-EPIPG-----IDLSDPKQLAEF-ASVNNYRPGNNKIKVKRQVGL--SAANE 281
+ E +++ E +P +L+ +Q+ ++ N++ P ++ ++ L A N
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPAGKQV----EISLVNGAKNL 377
Query: 282 VV 283
VV
Sbjct: 378 VV 379
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.11
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGE 38
+ H+C CGK F LK H+L+HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.0 bits (64), Expect = 0.17
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
+G++PF C C F+ N H+++HT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHT 31
Score = 27.0 bits (59), Expect = 0.88
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 65 HTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+G RP+VC C F N H+ H
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVH 30
Score = 25.9 bits (56), Expect = 2.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 9 GPRVHVCAECGKAFVESSKLKRHQLVHT 36
G R VC C AF + RH VHT
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHT 31
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 28.3 bits (63), Expect = 0.23
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+ CP C K+F +S +L HIL H K
Sbjct: 3 FACPE--CPKRFMRSDHLTLHILLHENKK 29
Score = 26.0 bits (57), Expect = 1.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEK 39
C EC K F+ S L H L+H +K
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (64), Expect = 0.25
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
EK F+C C K FS L H RIHT
Sbjct: 7 GQKEKCFKC--NKCEKTFSCSKYLTQHERIHT 36
Score = 25.6 bits (55), Expect = 3.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 15 CAECGKAFVESSKLKRHQLVHT 36
C +C K F S L +H+ +HT
Sbjct: 15 CNKCEKTFSCSKYLTQHERIHT 36
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 28.6 bits (63), Expect = 0.25
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 15 CAECGKAFVESSKLKRHQLVH 35
C C ++FVE S L RHQ VH
Sbjct: 4 CGLCERSFVEKSALSRHQRVH 24
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 28.1 bits (62), Expect = 0.34
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+PYVC + C K+F QS+ L +HI H
Sbjct: 1 KPYVC--ERCGKRFVQSSQLANHIRHH 25
Score = 25.8 bits (56), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 13 HVCAECGKAFVESSKLKRH 31
+VC CGK FV+SS+L H
Sbjct: 3 YVCERCGKRFVQSSQLANH 21
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 28.0 bits (62), Expect = 0.35
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
+ CP C K+F +S +L HI H
Sbjct: 3 FACPE--CPKRFMRSDHLSKHITLHELLG 29
Score = 24.5 bits (53), Expect = 6.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEKP 40
C EC K F+ S L +H +H
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGE 30
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 0.35
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
RV + K S+ H+ + GEK Q E + +LR + + +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQR--EKSEQVLDNPEDLRGPIHLSVLRQ 235
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.37
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 28/87 (32%)
Query: 156 IQQKFIKKEEPECQITTHHNMVQIDKSSRKW-EQKQVQIRTLEGEFSVTM--WASGGTDD 212
I Q +EPE RKW E+++ +++ L+ V W D
Sbjct: 74 IAQADRLTQEPESI--------------RKWREEQRKRLQELDAASKVMEQEWREKAKKD 119
Query: 213 DECSNPEFEQEHEYEDCILTEQEIKHE 239
E E+ Q EQ K++
Sbjct: 120 LE----EWNQRQS-------EQVEKNK 135
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 27.3 bits (60), Expect = 0.59
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 12 VHVC--AECGKAFVESSKLKRHQLVHTG 37
V+VC CG++F + KL RH+ +HTG
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHTG 29
Score = 27.3 bits (60), Expect = 0.63
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 41 FQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+ C FE CG+ F+ L H +IHTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.1 bits (64), Expect = 0.61
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 1 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 41
++KH+ + C CGK + +K H + + P
Sbjct: 51 LKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 25.6 bits (55), Expect = 8.8
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 14 VCAECGKAFVES-SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
C C ++ LK+H ++ F C CGK+ ++ HV + P
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENC-KQEMFTCH--HCGKQLRSLAGMKYHVMANHNSLP 90
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.0 bits (64), Expect = 0.64
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 3 KHLHTHGPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCT 44
+H + +VC EC L H L H GE+ F+ T
Sbjct: 41 EHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT 83
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 28.3 bits (62), Expect = 0.67
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 15 CAECGKAFVESSKLKRHQLVH 35
C CGK F ++++L++H+ H
Sbjct: 16 CGLCGKVFTDANRLRQHEAQH 36
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 28.4 bits (62), Expect = 0.70
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVC 73
++ +P++C +GC F++ NL H + +H D P
Sbjct: 22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS 61
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.0 bits (60), Expect = 1.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 10 PRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
PR + C+ C + F + L H VH ++
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 24.3 bits (53), Expect = 8.2
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+ + C+F C + F L H+ +H DR
Sbjct: 5 RSYTCSF--CKREFRSAQALGGHMNVHRRDR 33
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 27.3 bits (60), Expect = 1.3
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 42 QCTFEGCGKRFSLDFNLRTHV-------RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 94
+C ++ C + S F+L+ H+ P C ++ C+ + ++ +HI
Sbjct: 3 KCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA 62
Query: 95 H 95
Sbjct: 63 Q 63
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 1.4
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 124 YE--ETL--HIPSDHV----NTVYLEETQVLD---------DHDNSKKYIQQKFIKKEEP 166
YE E + +P + + N +D D SK Y Q F K+ E
Sbjct: 168 YEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAI-SKLYYVQFFFKQAEQ 226
Query: 167 E 167
E
Sbjct: 227 E 227
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 2.0
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+ KP++C C ++ NL H+R HTG++
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGEK 36
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.9 bits (56), Expect = 2.2
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 66 TGDRPYVCPFDGCNKKFAQSTNLKSHI 92
+G YVC C KKF S L+SHI
Sbjct: 3 SGSSGYVCAL--CLKKFVSSIRLRSHI 27
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
K F C + C K F +L+ H+RIHT ++
Sbjct: 8 KIFTCEY--CNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.4 bits (52), Expect = 7.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEK 39
++ C C K F L+ H +HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.8 bits (58), Expect = 3.3
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 14 VCAECGKAFVESSK-LKRHQLV-HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 70
VC C ++ LK+H V + +C C K+F L H +P
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQ--HCRKQFKSKAGLNYHTMAEHSAKP 82
>3d59_A Platelet-activating factor acetylhydrolase; secreted protein,
alpha/beta-hydrolase-fold, LDL-bound, lipoprotein
associated phospholipase A2, LP-PLA2; 1.50A {Homo
sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A*
Length = 383
Score = 28.3 bits (62), Expect = 3.9
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 51 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLK 89
+ SL F L+ H+ +H + C +G ++ TN+
Sbjct: 340 KASLAF-LQKHLGLHKDFDQWDCLIEGDDENLIPGTNIN 377
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium
tumefaciens}
Length = 87
Score = 26.4 bits (58), Expect = 4.4
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 14 VCAECGKAFVESSKLKRHQLVHTGEKP 40
VC ECG +F LKRH H P
Sbjct: 23 VCLECGGSF---KSLKRHLTTHHSMTP 46
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV,
proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV
DMU; 1.95A {Bos taurus}
Length = 129
Score = 26.2 bits (57), Expect = 9.2
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVH 35
C CG + KL HQL H
Sbjct: 109 EAQRCPSCGTHY----KLVPHQLAH 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,796,329
Number of extensions: 273535
Number of successful extensions: 1548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 503
Length of query: 318
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,077,219
Effective search space: 913297056
Effective search space used: 913297056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)