RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16882
(318 letters)
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 56.9 bits (137), Expect = 6e-12
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGE 38
RVHVCAECGKAFVESSKLKRHQLVHTGE
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVHTGE 28
Score = 23.0 bits (49), Expect = 7.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
R +VC C K F +S+ LK H L H
Sbjct: 1 RVHVCA--ECGKAFVESSKLKRHQLVH 25
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 53.6 bits (129), Expect = 1e-10
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 41 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF 75
F C CGK F+ +L+ H+++H+ R Y+C F
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 50.1 bits (120), Expect = 2e-09
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEKPFQCTF 45
CGK+F LK H +H+ + + C F
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 35.1 bits (81), Expect = 5e-04
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTH 95
+ CP C K F +LK H+ H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 53.4 bits (128), Expect = 2e-10
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 26 SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+ ++ + +K F+C F GC K F +N+R+H++ H DR
Sbjct: 5 GSIDKY-VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 38.4 bits (89), Expect = 3e-05
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 57 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
++ +V+ D+ + C F GC K F + N++SHI TH + +
Sbjct: 6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 36.8 bits (85), Expect = 1e-04
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 1 MRKHLHTHG--PRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
+ K++ + C K F ++ H H ++
Sbjct: 7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 50.7 bits (122), Expect = 1e-09
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 34 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+H+GEKP+ C CGK FS L H R+HTG
Sbjct: 1 IHSGEKPYGCVE--CGKAFSRSSILVQHQRVHTG 32
Score = 44.5 bits (106), Expect = 2e-07
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGE 38
H+ G + + C ECGKAF SS L +HQ VHTGE
Sbjct: 2 HS-GEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 41.8 bits (99), Expect = 1e-06
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 64 IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
IH+G++PY C C K F++S+ L H H
Sbjct: 1 IHSGEKPYGCVE--CGKAFSRSSILVQHQRVH 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 50.4 bits (121), Expect = 1e-09
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 13 HVCAECGKAFVESSKLKRH-QLVHTGEKPFQC 43
++C CGK F L H + VHT E+P +C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 48.5 bits (116), Expect = 9e-09
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 36 TGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVC 73
+ KP+ C CGK FS +L H++ +HT +RP+ C
Sbjct: 1 SVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 30.3 bits (69), Expect = 0.020
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 66 TGDRPYVCPFDGCNKKFAQSTNLKSHI-LTH 95
+ +PY+C C K F++ +L HI H
Sbjct: 1 SVGKPYICQS--CGKGFSRPDHLNGHIKQVH 29
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 48.6 bits (116), Expect = 6e-09
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 30 RHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
R + + ++C + CGK FS +L H R HTG
Sbjct: 2 RSEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTG 37
Score = 40.9 bits (96), Expect = 3e-06
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
R Y C G F+ S++L H TH
Sbjct: 3 SEWQQRERRRYKCDECGK--SFSHSSDLSKHRRTH 35
Score = 39.0 bits (91), Expect = 2e-05
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 3 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE 38
+ R + C ECGK+F SS L +H+ HTGE
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 48.1 bits (115), Expect = 9e-09
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
++P+ C GC K F + +L H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 43.1 bits (102), Expect = 6e-07
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
DRPY C GC+K F ++ +L H +H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 36.9 bits (86), Expect = 9e-05
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 11 RVHVCAE--CGKAFVESSKLKRHQLVHTGE 38
R + C C KAFV + L RH+ H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 48.1 bits (115), Expect = 1e-08
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+PF CT+ CGKRF+ L+ H R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 42.3 bits (100), Expect = 1e-06
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 10 PRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
P + + CGK F S +L+RH+ HTGEK
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 38.5 bits (90), Expect = 2e-05
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
RP++C + C K+F +S L+ H TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 47.3 bits (113), Expect = 2e-08
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+P+ C E C +RFS +L H+RIHTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 39.6 bits (93), Expect = 8e-06
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
RPY CP + C+++F++S +L HI H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 37.7 bits (88), Expect = 4e-05
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 11 RVHVCAE--CGKAFVESSKLKRHQLVHTG 37
R + C C + F S+ L RH +HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 48.1 bits (114), Expect = 2e-08
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+K + C CGK F+ H+ +H G RPY C C KKF +L H+ H
Sbjct: 1 DKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 46.6 bits (110), Expect = 5e-08
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 17 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
+CGK+F S+ RH +H G +P+ C CGK+F + +L H++IH
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 33.1 bits (75), Expect = 0.003
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVH 35
G R + C CGK F L H +H
Sbjct: 24 MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 47.0 bits (112), Expect = 2e-08
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
+P+ C F+GC K+F+ NL++H+ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 46.2 bits (110), Expect = 4e-08
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHA 96
RPYVCPFDGCNKKFAQSTNLKSHILTHA
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 35.0 bits (81), Expect = 4e-04
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 11 RVHVCAE--CGKAFVESSKLKRHQLVHT 36
R +VC C K F +S+ LK H L H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 46.9 bits (112), Expect = 3e-08
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
KP +CTFEGC K +S NL+TH+R HTG+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 39.2 bits (92), Expect = 1e-05
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 13 HVCAE--CGKAFVESSKLKRHQLVHTGE 38
H C C K++ LK H HTGE
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 38.9 bits (91), Expect = 1e-05
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+P+ C F+GC K +++ NLK+H+ +H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 45.3 bits (108), Expect = 7e-08
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEK 39
VC C +AF LKRH HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 40.7 bits (96), Expect = 4e-06
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
+ F C C + F+ +L+ H R HT ++
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 32.6 bits (75), Expect = 0.003
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
R +VC C + FA+ +LK H +H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 45.1 bits (107), Expect = 1e-07
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 61 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
R TG +P+ CP + F++S +L H H
Sbjct: 2 STRGSTGIKPFQCPDCD--RSFSRSDHLALHRKRH 34
Score = 44.0 bits (104), Expect = 4e-07
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 31 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
TG KPFQC C + FS +L H + H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHML 36
Score = 33.6 bits (77), Expect = 0.001
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 4 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG 37
G + C +C ++F S L H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 44.7 bits (106), Expect = 1e-07
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 34 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
HTGEKP+ C+ C K F L H + +
Sbjct: 2 THTGEKPYACSH--CDKTFRQKQLLDMHFKRYHD 33
Score = 42.7 bits (101), Expect = 9e-07
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
R HTG++PY C C+K F Q L H +
Sbjct: 1 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRY 31
Score = 39.7 bits (93), Expect = 9e-06
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
HT G + + C+ C K F + L H +
Sbjct: 3 HT-GEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 44.3 bits (105), Expect = 2e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 37.4 bits (87), Expect = 6e-05
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 11 RVHVCAE--CGKAFVESSKLKRHQLVHTGE 38
+ C CGK F L+ H +HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 37.4 bits (87), Expect = 7e-05
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+P+ C F+GC K+F+ NL++H+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 44.2 bits (105), Expect = 3e-07
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 34 VHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGD 68
H+GEKP++C C RF+ ++ H+ + HT +
Sbjct: 2 THSGEKPYECYI--CHARFTQSGTMKMHILQKHTEN 35
Score = 43.8 bits (104), Expect = 3e-07
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 63 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
R H+G++PY C C+ +F QS +K HIL
Sbjct: 1 RTHSGEKPYECYI--CHARFTQSGTMKMHILQK 31
Score = 35.7 bits (83), Expect = 3e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
H+ G + + C C F +S +K H L E
Sbjct: 3 HS-GEKPYECYICHARFTQSGTMKMHILQKHTEN 35
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 43.2 bits (102), Expect = 5e-07
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 35 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+G++PF C C F+ N H+++HT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTD 32
Score = 35.1 bits (81), Expect = 3e-04
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 65 HTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 95
+G RP+VC C F N H+ H
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVH 30
Score = 35.1 bits (81), Expect = 3e-04
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 6 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGE 38
+ G R VC C AF + RH VHT
Sbjct: 2 SS-GKRPFVCRICLSAFTTKANCARHLKVHTDT 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 42.3 bits (100), Expect = 1e-06
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEK 39
C EC K F+ S L +H H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 39.2 bits (92), Expect = 1e-05
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 69
K F C C KRF +L H++ H +
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTHQNKK 29
Score = 29.6 bits (67), Expect = 0.033
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ + CP C K+F +S +L HI TH
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTH 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 41.8 bits (99), Expect = 1e-06
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
+KPFQC C + FS +L TH+R HTG
Sbjct: 1 QKPFQCRI--CMRNFSRSDHLTTHIRTHTG 28
Score = 40.7 bits (96), Expect = 4e-06
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTG 37
C C + F S L H HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 31.0 bits (71), Expect = 0.010
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+P+ C C + F++S +L +HI TH
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTH 26
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 39.7 bits (92), Expect = 9e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 11 RVHVCAECGKAFVESSKLKRHQLVHTGEKPF 41
+ C CGK F + L RH+L H+GEKP+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 25.0 bits (54), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 46 EGCGKRFSLDFNLRTHVRIHTGDRPY 71
E CGK F ++L H H+G++PY
Sbjct: 9 EICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 38.0 bits (89), Expect = 4e-05
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHT 36
+ C ECGKAF ++S L HQ +HT
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIHT 26
Score = 34.1 bits (79), Expect = 8e-04
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
KP++C CGK FS + L H RIHT
Sbjct: 1 KPYKC--LECGKAFSQNSGLINHQRIHT 26
Score = 26.0 bits (58), Expect = 0.60
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+PY C C K F+Q++ L +H H
Sbjct: 1 KPYKC--LECGKAFSQNSGLINHQRIH 25
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 36.1 bits (83), Expect = 2e-04
Identities = 15/16 (93%), Positives = 16/16 (100%)
Query: 303 TIACPHKGCSKMFRDN 318
TIACPHKGC+KMFRDN
Sbjct: 1 TIACPHKGCTKMFRDN 16
Score = 27.2 bits (60), Expect = 0.20
Identities = 10/10 (100%), Positives = 10/10 (100%)
Query: 1 MRKHLHTHGP 10
MRKHLHTHGP
Sbjct: 19 MRKHLHTHGP 28
Score = 25.7 bits (56), Expect = 0.90
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 73 CPFDGCNKKFAQSTNLKSHILTH 95
CP GC K F ++ ++ H+ TH
Sbjct: 4 CPHKGCTKMFRDNSAMRKHLHTH 26
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 34.3 bits (78), Expect = 7e-04
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
KPF C EGC K F+ +L H HTG+
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
Score = 29.3 bits (65), Expect = 0.048
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+P+ C +GC K F +L H LTH
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 25.4 bits (55), Expect = 1.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 18 CGKAFVESSKLKRHQLVHTGE 38
C K F L RH L HTGE
Sbjct: 10 CEKGFTSLHHLTRHSLTHTGE 30
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 32.0 bits (72), Expect = 0.005
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
+ P++C EGC KRFSL L+ H ++H
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVH 28
Score = 31.6 bits (71), Expect = 0.007
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 70 PYVCPFDGCNKKFAQSTNLKSHILTHA 96
PY CP +GC+K+F+ + LK H HA
Sbjct: 3 PYECPHEGCDKRFSLPSRLKRHEKVHA 29
Score = 24.3 bits (52), Expect = 2.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 18 CGKAFVESSKLKRHQLVH 35
C K F S+LKRH+ VH
Sbjct: 11 CDKRFSLPSRLKRHEKVH 28
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 31.4 bits (71), Expect = 0.007
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
KP+ C GC KR++ +LR HV+ G
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
Score = 31.0 bits (70), Expect = 0.011
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+PYVC GC K++ ++L+ H+ T
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 31.0 bits (70), Expect = 0.012
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTH 95
D+P++C GC ++F +L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 30.2 bits (68), Expect = 0.027
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHT 66
+KPF CT GCG+RF+ + +L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 30.1 bits (68), Expect = 0.022
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 39 KPFQCTFEGC---GKRFSLDFNLRTHVRIHTGD 68
K F C + GC + F + L H+R HTG+
Sbjct: 1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33
Score = 23.5 bits (51), Expect = 5.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGE 38
C+ + F L H HTGE
Sbjct: 10 CSRELRPFKAQYMLVVHMRRHTGE 33
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 29.9 bits (67), Expect = 0.024
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSH 91
+PY+C +GC+K F+ +++ H
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKH 23
Score = 26.8 bits (59), Expect = 0.34
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 39 KPFQCTFEGCGKRFS 53
KP+ C EGC K FS
Sbjct: 1 KPYMCEHEGCSKAFS 15
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 29.4 bits (66), Expect = 0.042
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIH 65
EKPF C CG++F+ + H +IH
Sbjct: 1 EKPFACDI--CGRKFARSDERKRHTKIH 26
Score = 26.3 bits (58), Expect = 0.54
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 68 DRPYVCPFDGCNKKFAQSTNLKSHILTHAK 97
++P+ C D C +KFA+S K H H +
Sbjct: 1 EKPFAC--DICGRKFARSDERKRHTKIHLR 28
Score = 25.2 bits (55), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 15 CAECGKAFVESSKLKRHQLVH 35
C CG+ F S + KRH +H
Sbjct: 6 CDICGRKFARSDERKRHTKIH 26
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 28.9 bits (64), Expect = 0.063
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTHAK 97
YVC F+ C K F + LK H +H +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ 28
Score = 24.3 bits (52), Expect = 2.8
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 12 VHVC--AECGKAFVESSKLKRHQLVHT 36
++VC CGKAF + ++LK HQ HT
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHT 27
Score = 23.9 bits (51), Expect = 3.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 41 FQCTFEGCGKRFSLDFNLRTHVRIHT 66
+ C FE CGK F L+ H HT
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 27.8 bits (61), Expect = 0.13
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 15 CAECGKAFVESSKLKRHQLVH 35
C C ++FVE S L RHQ VH
Sbjct: 3 CGLCERSFVEKSALSRHQRVH 23
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 28.4 bits (63), Expect = 0.14
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 15 CAECGKAFVESSKLKRHQLVH 35
C CGK F ++++L++H+ H
Sbjct: 9 CGLCGKVFTDANRLRQHEAQH 29
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 28.0 bits (62), Expect = 0.14
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
K + C+F CG ++ ++ L+ H+ HTG+
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE 31
Score = 25.7 bits (56), Expect = 0.89
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTH 95
+ Y+C F C + ++ L++H+ H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKH 28
Score = 23.0 bits (49), Expect = 8.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 16 AECGKAFVESSKLKRHQLVHTGE 38
A+CG A+ ++ KL+ H HTGE
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGE 31
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 27.5 bits (61), Expect = 0.16
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTGEK 39
++C ECG + S LK+H HT +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
Score = 22.9 bits (49), Expect = 7.8
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 71 YVCPFDGCNKKFAQSTNLKSHILTH 95
Y+C C + + + LK HI TH
Sbjct: 2 YICEE--CGIRAKKPSMLKKHIRTH 24
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 27.8 bits (62), Expect = 0.20
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 10 PRVHVCAECGKAFVESSKLKRHQLVHTGEK 39
PR + C+ C + F + L H VH ++
Sbjct: 3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 32
Score = 23.1 bits (50), Expect = 8.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 99
R Y C F C ++F + L H+ H + +
Sbjct: 4 RSYTCSF--CKREFRSAQALGGHMNVHRRDR 32
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.0 bits (59), Expect = 0.32
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHTG 37
H C CGK F KLK H HTG
Sbjct: 2 HKCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 25.8 bits (56), Expect = 0.76
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 40 PFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
P +C CGK FS L+TH+R HTG
Sbjct: 1 PHKCEV--CGKCFSRKDKLKTHMRCHTG 26
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 26.6 bits (58), Expect = 0.74
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 39 KPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRP 70
+P++C +GC F++ NL H + +H D P
Sbjct: 19 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP 51
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 25.8 bits (56), Expect = 1.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 10 PRVHVCAECGKAFVESSKLKRH 31
P VC++CGK F + + RH
Sbjct: 2 PAAFVCSKCGKTFTRRNTMARH 23
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 25.4 bits (55), Expect = 1.1
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 67
EKP+ C CG RF + HVR H G
Sbjct: 1 EKPYSCPV--CGLRFKRKDRMSYHVRSHDG 28
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (54), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 38 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 68
E+PF+C C L H+R HTGD
Sbjct: 1 ERPFKCQI--CPYASRNSSQLTVHLRSHTGD 29
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.1 bits (54), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 69 RPYVCPFDGCNKKFAQSTNLKSHILT-HAKAK 99
+ Y C + C + A S+NLK+HI T H+K K
Sbjct: 1 KTYQCQY--CEFRSADSSNLKTHIKTKHSKEK 30
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 24.3 bits (52), Expect = 2.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 15 CAECGKAFVESSKLKRHQLVHTGEK 39
C C K F+ LK H HTGEK
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.0 bits (51), Expect = 3.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 13 HVCAECGKAFVESSKLKRHQLVHT 36
+ C C A +SS L +H +H+
Sbjct: 4 YKCKTCDYAAADSSSLNKHLRIHS 27
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 25.4 bits (56), Expect = 7.5
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 159 KFIKKEEPECQITTHHNMVQIDKS 182
F+KK + IT + K
Sbjct: 65 LFVKKAGADGIITIKPKNYVVAKK 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,199,280
Number of extensions: 55726
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 124
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)