Query psy16887
Match_columns 160
No_of_seqs 146 out of 522
Neff 5.6
Searched_HMMs 46136
Date Sat Aug 17 00:38:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 99.9 4.7E-28 1E-32 217.9 6.8 146 13-159 324-520 (542)
2 PF00625 Guanylate_kin: Guanyl 99.9 1.1E-25 2.4E-30 176.9 3.9 126 29-158 2-173 (183)
3 KOG0708|consensus 99.9 6E-24 1.3E-28 184.8 5.1 126 13-153 171-331 (359)
4 COG0194 Gmk Guanylate kinase [ 99.9 5.3E-24 1.2E-28 171.7 4.5 126 29-158 4-173 (191)
5 PRK14737 gmk guanylate kinase; 99.9 3.8E-23 8.2E-28 165.1 6.7 127 28-158 3-175 (186)
6 smart00072 GuKc Guanylate kina 99.9 3.1E-23 6.8E-28 163.5 5.6 126 29-158 2-173 (184)
7 KOG3580|consensus 99.9 7.3E-23 1.6E-27 187.1 4.4 130 13-157 615-764 (1027)
8 PLN02772 guanylate kinase 99.9 4.9E-22 1.1E-26 175.4 6.8 138 18-159 120-310 (398)
9 KOG0707|consensus 99.8 5.7E-20 1.2E-24 152.1 5.1 131 25-159 33-213 (231)
10 PRK14738 gmk guanylate kinase; 99.6 2.5E-15 5.5E-20 121.0 7.1 75 25-101 9-95 (206)
11 cd00071 GMPK Guanosine monopho 99.4 1E-12 2.2E-17 100.0 7.3 73 31-104 1-85 (137)
12 TIGR03263 guanyl_kin guanylate 99.2 7.3E-11 1.6E-15 91.4 6.5 71 30-101 2-83 (180)
13 PRK00300 gmk guanylate kinase; 99.0 7.8E-10 1.7E-14 87.4 4.9 70 29-100 5-86 (205)
14 TIGR02322 phosphon_PhnN phosph 98.1 4.9E-06 1.1E-10 64.5 5.1 69 30-99 2-81 (179)
15 PRK10078 ribose 1,5-bisphospho 97.8 1.4E-05 3.1E-10 62.9 3.1 70 30-100 3-81 (186)
16 PRK08356 hypothetical protein; 97.8 1.1E-05 2.3E-10 64.1 2.3 63 30-98 6-81 (195)
17 COG3709 Uncharacterized compon 96.4 0.004 8.7E-08 50.4 3.8 107 29-141 5-146 (192)
18 PRK00091 miaA tRNA delta(2)-is 95.0 0.018 4E-07 49.7 2.9 59 29-88 4-82 (307)
19 KOG3812|consensus 87.2 0.4 8.7E-06 42.9 2.1 49 106-157 284-343 (475)
20 TIGR00174 miaA tRNA isopenteny 85.9 1 2.3E-05 38.7 4.0 43 31-73 1-59 (287)
21 PLN02840 tRNA dimethylallyltra 60.5 13 0.00029 33.7 4.3 44 30-73 22-81 (421)
22 KOG3209|consensus 59.2 4.7 0.0001 39.4 1.2 37 61-100 75-115 (984)
23 cd00227 CPT Chloramphenicol (C 55.9 14 0.0003 28.4 3.1 25 30-54 3-30 (175)
24 COG0563 Adk Adenylate kinase a 53.1 14 0.00031 29.3 2.9 23 32-58 3-28 (178)
25 PF13207 AAA_17: AAA domain; P 49.7 14 0.00031 25.9 2.2 19 32-50 2-23 (121)
26 PF13469 Sulfotransfer_3: Sulf 46.7 21 0.00045 26.3 2.8 28 30-57 1-31 (215)
27 PRK00098 GTPase RsgA; Reviewed 46.2 24 0.00052 29.9 3.4 25 29-53 164-191 (298)
28 PF08477 Miro: Miro-like prote 43.8 25 0.00054 24.4 2.7 21 32-52 2-25 (119)
29 PF13671 AAA_33: AAA domain; P 43.4 28 0.00062 25.0 3.0 20 32-51 2-24 (143)
30 PF11288 DUF3089: Protein of u 42.7 23 0.0005 29.2 2.6 25 26-50 91-116 (207)
31 COG3172 NadR Predicted ATPase/ 40.8 27 0.00058 28.5 2.7 29 25-53 4-35 (187)
32 PF12775 AAA_7: P-loop contain 40.5 27 0.00058 29.5 2.8 28 27-54 31-62 (272)
33 KOG4152|consensus 39.2 22 0.00047 34.0 2.2 79 15-98 16-114 (830)
34 PF00685 Sulfotransfer_1: Sulf 39.0 23 0.00051 27.7 2.1 28 29-56 1-30 (267)
35 PF03193 DUF258: Protein of un 35.6 33 0.00073 27.1 2.5 21 30-50 36-59 (161)
36 COG1880 CdhB CO dehydrogenase/ 35.6 36 0.00078 27.4 2.6 29 28-57 35-65 (170)
37 PF03464 eRF1_2: eRF1 domain 2 34.6 31 0.00067 25.7 2.1 25 27-51 72-98 (133)
38 PF07728 AAA_5: AAA domain (dy 34.1 41 0.00088 24.3 2.6 24 31-54 1-27 (139)
39 PF05729 NACHT: NACHT domain 32.5 48 0.001 23.9 2.8 20 30-49 1-23 (166)
40 cd04161 Arl2l1_Arl13_like Arl2 32.2 50 0.0011 24.7 2.9 23 32-54 2-27 (167)
41 KOG1969|consensus 31.8 28 0.00061 34.3 1.7 37 2-38 289-335 (877)
42 TIGR01359 UMP_CMP_kin_fam UMP- 30.8 55 0.0012 24.8 2.9 20 32-51 2-24 (183)
43 PF13238 AAA_18: AAA domain; P 30.5 57 0.0012 22.6 2.8 19 32-50 1-22 (129)
44 COG1126 GlnQ ABC-type polar am 30.5 43 0.00092 28.4 2.4 18 29-46 28-48 (240)
45 cd04160 Arfrp1 Arfrp1 subfamil 30.2 55 0.0012 23.9 2.8 20 32-51 2-24 (167)
46 PRK08099 bifunctional DNA-bind 29.9 54 0.0012 29.3 3.1 26 26-51 216-244 (399)
47 cd00464 SK Shikimate kinase (S 29.4 66 0.0014 23.3 3.1 27 31-57 1-30 (154)
48 TIGR01360 aden_kin_iso1 adenyl 29.1 55 0.0012 24.6 2.7 20 31-50 5-27 (188)
49 PF05621 TniB: Bacterial TniB 29.1 75 0.0016 27.8 3.8 31 26-56 56-91 (302)
50 COG3801 Uncharacterized protei 29.0 52 0.0011 25.1 2.4 27 31-57 52-78 (124)
51 cd01428 ADK Adenylate kinase ( 28.9 58 0.0013 24.7 2.8 20 32-51 2-24 (194)
52 PRK08118 topology modulation p 28.8 58 0.0012 25.1 2.8 20 32-51 4-26 (167)
53 cd04138 H_N_K_Ras_like H-Ras/N 28.0 60 0.0013 23.2 2.6 18 32-49 4-24 (162)
54 PRK14532 adenylate kinase; Pro 27.7 68 0.0015 24.5 3.0 23 32-54 3-28 (188)
55 PRK14531 adenylate kinase; Pro 27.7 65 0.0014 24.9 2.9 21 30-50 3-26 (183)
56 PF03205 MobB: Molybdopterin g 27.5 65 0.0014 24.3 2.8 20 32-51 3-25 (140)
57 TIGR02528 EutP ethanolamine ut 27.5 53 0.0012 23.4 2.3 20 31-50 2-24 (142)
58 cd00009 AAA The AAA+ (ATPases 27.4 80 0.0017 21.6 3.1 24 28-51 18-44 (151)
59 cd01897 NOG NOG1 is a nucleola 27.3 61 0.0013 23.6 2.6 22 30-51 1-25 (168)
60 cd00876 Ras Ras family. The R 27.2 62 0.0013 23.1 2.6 18 32-49 2-22 (160)
61 TIGR01351 adk adenylate kinase 27.0 64 0.0014 25.4 2.8 19 32-50 2-23 (210)
62 COG4161 ArtP ABC-type arginine 26.8 66 0.0014 26.6 2.8 29 24-52 23-55 (242)
63 cd04171 SelB SelB subfamily. 26.3 64 0.0014 23.2 2.5 23 32-54 3-28 (164)
64 cd01860 Rab5_related Rab5-rela 26.2 64 0.0014 23.3 2.5 19 32-50 4-25 (163)
65 cd00879 Sar1 Sar1 subfamily. 25.9 1E+02 0.0022 23.2 3.7 24 29-52 19-45 (190)
66 PF13173 AAA_14: AAA domain 25.8 82 0.0018 22.7 3.0 23 29-51 2-27 (128)
67 PRK08233 hypothetical protein; 25.8 77 0.0017 23.7 3.0 23 30-52 4-29 (182)
68 PRK06762 hypothetical protein; 25.6 72 0.0016 23.8 2.7 24 29-52 2-28 (166)
69 PF07931 CPT: Chloramphenicol 25.5 73 0.0016 25.3 2.9 27 30-56 2-31 (174)
70 PF01926 MMR_HSR1: 50S ribosom 25.5 71 0.0015 22.3 2.5 19 32-50 2-23 (116)
71 COG1100 GTPase SAR1 and relate 25.5 67 0.0015 24.7 2.6 23 30-52 6-31 (219)
72 smart00173 RAS Ras subfamily o 25.4 68 0.0015 23.3 2.5 19 31-49 2-23 (164)
73 cd04101 RabL4 RabL4 (Rab-like4 25.1 84 0.0018 22.8 3.0 23 32-54 3-31 (164)
74 PRK14530 adenylate kinase; Pro 25.0 75 0.0016 25.1 2.9 21 32-52 6-29 (215)
75 cd02019 NK Nucleoside/nucleoti 24.9 84 0.0018 20.5 2.7 19 32-50 2-23 (69)
76 PRK03839 putative kinase; Prov 24.9 81 0.0017 24.0 2.9 24 31-54 2-28 (180)
77 KOG3354|consensus 24.8 89 0.0019 25.5 3.2 44 28-81 11-57 (191)
78 cd04119 RJL RJL (RabJ-Like) su 24.3 72 0.0016 22.9 2.5 19 32-50 3-24 (168)
79 cd01861 Rab6 Rab6 subfamily. 24.3 80 0.0017 22.8 2.7 20 31-50 2-24 (161)
80 smart00382 AAA ATPases associa 24.1 1.1E+02 0.0024 20.5 3.2 25 30-54 3-30 (148)
81 COG3839 MalK ABC-type sugar tr 24.0 63 0.0014 28.6 2.4 20 30-49 30-52 (338)
82 cd04159 Arl10_like Arl10-like 24.0 67 0.0015 22.6 2.2 18 32-49 2-22 (159)
83 PRK00131 aroK shikimate kinase 23.9 1.2E+02 0.0026 22.3 3.6 26 29-54 4-32 (175)
84 cd04113 Rab4 Rab4 subfamily. 23.5 79 0.0017 22.9 2.6 18 32-49 3-23 (161)
85 PRK07261 topology modulation p 23.2 83 0.0018 24.2 2.8 19 32-50 3-24 (171)
86 PRK05057 aroK shikimate kinase 23.0 1.1E+02 0.0023 23.7 3.3 22 29-50 4-28 (172)
87 TIGR00073 hypB hydrogenase acc 22.9 76 0.0016 25.0 2.5 29 24-52 17-48 (207)
88 PHA02530 pseT polynucleotide k 22.4 86 0.0019 25.8 2.8 23 30-52 3-28 (300)
89 cd04146 RERG_RasL11_like RERG/ 22.2 85 0.0018 23.0 2.5 17 32-48 2-21 (165)
90 smart00175 RAB Rab subfamily o 22.1 87 0.0019 22.5 2.5 18 32-49 3-23 (164)
91 PF13521 AAA_28: AAA domain; P 22.1 88 0.0019 23.4 2.6 18 32-49 2-22 (163)
92 cd01870 RhoA_like RhoA-like su 22.1 87 0.0019 23.0 2.6 20 30-49 2-24 (175)
93 PRK14527 adenylate kinase; Pro 21.8 93 0.002 24.0 2.8 21 31-51 8-31 (191)
94 cd04129 Rho2 Rho2 subfamily. 21.7 1E+02 0.0023 23.4 3.0 24 31-54 3-30 (187)
95 PF13191 AAA_16: AAA ATPase do 21.5 1.1E+02 0.0023 22.7 3.0 27 26-52 21-50 (185)
96 cd00157 Rho Rho (Ras homology) 21.1 96 0.0021 22.5 2.6 19 32-50 3-24 (171)
97 cd04123 Rab21 Rab21 subfamily. 20.8 99 0.0021 22.0 2.6 18 32-49 3-23 (162)
98 PTZ00088 adenylate kinase 1; P 20.6 95 0.0021 25.5 2.7 19 32-50 9-30 (229)
99 PRK06217 hypothetical protein; 20.5 1.1E+02 0.0023 23.6 2.9 20 32-51 4-26 (183)
100 cd04139 RalA_RalB RalA/RalB su 20.4 99 0.0021 22.1 2.5 18 32-49 3-23 (164)
101 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 20.4 98 0.0021 22.6 2.5 19 31-49 4-25 (166)
102 TIGR03598 GTPase_YsxC ribosome 20.3 1.2E+02 0.0025 23.0 3.0 22 28-49 16-41 (179)
103 cd01862 Rab7 Rab7 subfamily. 20.2 96 0.0021 22.5 2.5 18 32-49 3-23 (172)
104 cd04154 Arl2 Arl2 subfamily. 20.2 1.1E+02 0.0024 22.7 2.8 22 30-51 15-39 (173)
105 cd04167 Snu114p Snu114p subfam 20.0 1.1E+02 0.0024 24.0 2.9 20 30-49 1-23 (213)
No 1
>KOG0609|consensus
Probab=99.94 E-value=4.7e-28 Score=217.90 Aligned_cols=146 Identities=22% Similarity=0.250 Sum_probs=118.5
Q ss_pred ccCccceeeccCCCCCCCcEEEEccCh---HHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh---
Q psy16887 13 SKFPAYERVSLRHPGFIRPVVLFGPVA---DLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA--- 81 (160)
Q Consensus 13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk---~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~--- 81 (160)
..+++||+|++.++...|+|||+||.+ ..|+++|+..+|++|+.+ | |+|++|.+|++|||| |+++|++
T Consensus 324 ~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FV-Sk~~~e~dI~ 402 (542)
T KOG0609|consen 324 PELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFV-SKEEMEADIR 402 (542)
T ss_pred cccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceee-ehHHHhhhhh
Confidence 457899999999998889999999995 689999999999999998 4 678999999999999 9999999
Q ss_pred -cccceeeeccceeeccccc-----------ccccCCC-------------eEEEecCCCCCCcccccccc-------Cc
Q psy16887 82 -TCLTSYGFYVDLLFGSNRS-----------DDLDSNP-------------RVYTRPWKNGKPGKSMDLKI-------RP 129 (160)
Q Consensus 82 -~~fiE~~~y~~~lygts~~-----------avldi~~-------------ivvfi~pks~k~iK~~~~~l-------~p 129 (160)
+.|||||+|.+|+|||++. |+||+.| +|||+.|++-..++.++..- .+
T Consensus 403 ~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~ 482 (542)
T KOG0609|consen 403 AGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQ 482 (542)
T ss_pred cCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhcccccccccc
Confidence 4499999999999999964 4667654 89999999855554443321 23
Q ss_pred cchHHHHHHHhC--------CCCCcceecccccccccC
Q psy16887 130 KVMENVKTLREK--------PGNSHGICHPVKLNNMFS 159 (160)
Q Consensus 130 ~s~e~~k~l~er--------~~~~~~~~~~v~l~~~~~ 159 (160)
...+.+++|.+. ..|+|+++.|.||+.+|.
T Consensus 483 ~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~ 520 (542)
T KOG0609|consen 483 FTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFR 520 (542)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHH
Confidence 455666666554 667777777899999874
No 2
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.91 E-value=1.1e-25 Score=176.88 Aligned_cols=126 Identities=24% Similarity=0.327 Sum_probs=94.3
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG 96 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg 96 (160)
.|||||+||+ |++|.++|++++|++|+.+ | |||+||.+|++|||| |+++|++ +.||||++|.|++||
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fv-s~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFV-SKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE---HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEE-eechhhhhhccccEEEEeeecchhhh
Confidence 6999999999 8999999999999999887 4 678899999999999 9999998 459999999999999
Q ss_pred cccc-----------ccccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC--------CCC
Q psy16887 97 SNRS-----------DDLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK--------PGN 144 (160)
Q Consensus 97 ts~~-----------avldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er--------~~~ 144 (160)
|++. ++++++ |++||+.|+|.+. ++.+++.++.++.+++.+| ..+
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~---l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~ 157 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEV---LKRRLRRRGDESEEEIEERLERAEKEFEHY 157 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHH---HHHHHHTTTHCHHHHHHHHHHHHHHHHGGG
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHH---HHHHHhccccccHHHHHHHHHHHHHHHhHh
Confidence 9854 455544 3899998887444 4445444444444444443 333
Q ss_pred --Ccceeccccccccc
Q psy16887 145 --SHGICHPVKLNNMF 158 (160)
Q Consensus 145 --~~~~~~~v~l~~~~ 158 (160)
.+.+..+.+|+.|+
T Consensus 158 ~~fd~vi~n~~le~~~ 173 (183)
T PF00625_consen 158 NEFDYVIVNDDLEEAV 173 (183)
T ss_dssp GGSSEEEECSSHHHHH
T ss_pred hcCCEEEECcCHHHHH
Confidence 66667777888765
No 3
>KOG0708|consensus
Probab=99.89 E-value=6e-24 Score=184.82 Aligned_cols=126 Identities=26% Similarity=0.324 Sum_probs=110.4
Q ss_pred ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCccccc--CCcccccCCceeeEEecHHHHhh----cccce
Q psy16887 13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPH--PRRRNQEKFRWSSFFNSLTKVSA----TCLTS 86 (160)
Q Consensus 13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~~--~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE 86 (160)
...++||.|.++.+...|||+|+||.++.|+++|+.++|++|+.|. +.+ .++++|++ +.|||
T Consensus 171 ~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~kF~~C~~~t~~------------~~~~eme~~~k~~~fI~ 238 (359)
T KOG0708|consen 171 LSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDKFKSCLPETLR------------PSREEMERDSKEETFID 238 (359)
T ss_pred cccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhccccccchhhhc------------ccHHHhhhhcccCceee
Confidence 4567999999999999999999999999999999999999999994 444 46999999 33999
Q ss_pred eeeccceeeccc-----------ccccccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC-
Q psy16887 87 YGFYVDLLFGSN-----------RSDDLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK- 141 (160)
Q Consensus 87 ~~~y~~~lygts-----------~~avldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er- 141 (160)
+|+|++++|||+ +||+||+ .||||||+|+|++++|+++ ...+.+++|+|+++
T Consensus 239 ~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~---~~~t~~~ake~~e~a 315 (359)
T KOG0708|consen 239 AGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERN---LKITGEQAKELLERA 315 (359)
T ss_pred ecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHh---cccchHHHHHHHHHH
Confidence 999999999998 5788875 4599999999999999999 33456788888887
Q ss_pred ----CCCCcceecccc
Q psy16887 142 ----PGNSHGICHPVK 153 (160)
Q Consensus 142 ----~~~~~~~~~~v~ 153 (160)
+++..+||.+|+
T Consensus 316 ~klEqe~~~~~t~vv~ 331 (359)
T KOG0708|consen 316 RKLEQELDRYFTLVVQ 331 (359)
T ss_pred HHhHhhhhhceEEEEe
Confidence 899999999886
No 4
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.89 E-value=5.3e-24 Score=171.67 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=101.8
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCccccc---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccc
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPH---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSN 98 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts 98 (160)
...+||+||| |+||.++|++++.-.|+.|+ +||+||++|+||||+ |+++|++ +.||||++|.||+|||+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fv-s~~EF~~~i~~~~fLE~a~~~gnyYGT~ 82 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFV-TEEEFEELIERDEFLEWAEYHGNYYGTS 82 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeC-CHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence 4678999999 79999999999944455555 679999999999999 9999999 56999999999999999
Q ss_pred ccc-----------cccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC----------CCC
Q psy16887 99 RSD-----------DLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK----------PGN 144 (160)
Q Consensus 99 ~~a-----------vldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er----------~~~ 144 (160)
+.. ++||+- +.||+.||| ..++++||..+.+++.+.+..| ..-
T Consensus 83 ~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs---~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~ 159 (191)
T COG0194 83 REPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPS---LEELERRLKGRGTDSEEVIARRLENAKKEISHADE 159 (191)
T ss_pred HHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCC---HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 644 455432 789999997 6778889887766655555444 455
Q ss_pred Ccceeccccccccc
Q psy16887 145 SHGICHPVKLNNMF 158 (160)
Q Consensus 145 ~~~~~~~v~l~~~~ 158 (160)
.++...|.||+.|+
T Consensus 160 fdyvivNdd~e~a~ 173 (191)
T COG0194 160 FDYVIVNDDLEKAL 173 (191)
T ss_pred CCEEEECccHHHHH
Confidence 78888899998775
No 5
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.88 E-value=3.8e-23 Score=165.12 Aligned_cols=127 Identities=10% Similarity=0.074 Sum_probs=94.3
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCCCCccc-cc---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA-PH---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG 96 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~-~~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg 96 (160)
.+++|||+||| |++|.++|++.+|+.|.. +| +||+||.+|++|||| |+++|++ +.|+||++|.||+||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fv-s~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFL-TIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeC-CHHHHHHHHHcCCeEEEEEECCeeec
Confidence 46789999999 699999999999986433 35 578999999999999 9999999 459999999999999
Q ss_pred ccccc-----------cccCCC--------------eEEEecCCCCCCccccccccCcc---chHHHHHHHhC-------
Q psy16887 97 SNRSD-----------DLDSNP--------------RVYTRPWKNGKPGKSMDLKIRPK---VMENVKTLREK------- 141 (160)
Q Consensus 97 ts~~a-----------vldi~~--------------ivvfi~pks~k~iK~~~~~l~p~---s~e~~k~l~er------- 141 (160)
|++.+ ++|+++ ++||+.||| ...+.+|+..+ +.+.+++..++
T Consensus 82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps---~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~ 158 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPS---EEEWEERLIHRGTDSEESIEKRIENGIIELDE 158 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCC---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 99764 444332 689998887 34445555433 33333332222
Q ss_pred CCCCcceeccccccccc
Q psy16887 142 PGNSHGICHPVKLNNMF 158 (160)
Q Consensus 142 ~~~~~~~~~~v~l~~~~ 158 (160)
....+++..|.+|+++.
T Consensus 159 ~~~~D~vI~N~dle~a~ 175 (186)
T PRK14737 159 ANEFDYKIINDDLEDAI 175 (186)
T ss_pred hccCCEEEECcCHHHHH
Confidence 45667777778888764
No 6
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.88 E-value=3.1e-23 Score=163.54 Aligned_cols=126 Identities=19% Similarity=0.289 Sum_probs=95.2
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCccccc-----CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPH-----PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG 96 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~-----~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg 96 (160)
.|||||+||| |++|.++|++++|+.|..++ ++|++|.+|++|+|+ |+++|++ +.|+||++|.||+||
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fv-s~~ef~~~i~~g~fve~~~~~g~~YG 80 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFV-SREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEEC-CHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence 5899999999 89999999999999998883 679999999999999 9999999 459999999999999
Q ss_pred ccccc-----------cccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC----------C
Q psy16887 97 SNRSD-----------DLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK----------P 142 (160)
Q Consensus 97 ts~~a-----------vldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er----------~ 142 (160)
|++.+ ++|++ +++||+.|++. +.+++|+..++.++.+.+.+| .
T Consensus 81 t~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~---~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~ 157 (184)
T smart00072 81 TSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSS---EELERRLRGRGTETAERIQKRLAAAQKEAQEY 157 (184)
T ss_pred cCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Confidence 99654 45543 38999988873 335555543322222222221 3
Q ss_pred CCCcceeccccccccc
Q psy16887 143 GNSHGICHPVKLNNMF 158 (160)
Q Consensus 143 ~~~~~~~~~v~l~~~~ 158 (160)
...+++..+.+|+.|+
T Consensus 158 ~~fd~~I~n~~l~~~~ 173 (184)
T smart00072 158 HLFDYVIVNDDLEDAY 173 (184)
T ss_pred ccCCEEEECcCHHHHH
Confidence 4456666677777765
No 7
>KOG3580|consensus
Probab=99.87 E-value=7.3e-23 Score=187.15 Aligned_cols=130 Identities=32% Similarity=0.536 Sum_probs=112.9
Q ss_pred ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccccCC-cc-cccCCceeeEEecHHHHhhcccceeeec
Q psy16887 13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR-RR-NQEKFRWSSFFNSLTKVSATCLTSYGFY 90 (160)
Q Consensus 13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~~~~-r~-~E~~g~~Y~Fv~s~~~~e~~~fiE~~~y 90 (160)
..||+||||++++++|+|||||+||.+|...+||.++-||.|..+.+. |. +-. +.--++ ....+
T Consensus 615 tkfPaYERVvLREAgFkRPVvifGPiADiAmeKLa~E~PD~fqiAkteprdag~~--~stg~i-rL~Tv----------- 680 (1027)
T KOG3580|consen 615 TKFPAYERVVLREAGFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEPRDAGSE--KSTGVI-RLNTV----------- 680 (1027)
T ss_pred ccCCchhhhhhhhhcccCceEEeccHHHHHHHHHhhhCcchhhhhccccccCCcc--cccceE-Eehhh-----------
Confidence 679999999999999999999999999999999999999999999543 22 222 222233 33334
Q ss_pred cceeecccccccccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC-----CCCCcceeccc
Q psy16887 91 VDLLFGSNRSDDLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-----PGNSHGICHPV 152 (160)
Q Consensus 91 ~~~lygts~~avldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-----~~~~~~~~~~v 152 (160)
..+...++||+||++| ||||..|.|++.+|.|++||.|.|.+++++||+| ..++|+||+.|
T Consensus 681 -rqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr~SsRkLy~~a~KL~K~~~HLFTaTI 759 (1027)
T KOG3580|consen 681 -RQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSRKSSRKLYDQANKLKKTCAHLFTATI 759 (1027)
T ss_pred -HHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccchhHHHHHHHHHHHhhhchhheEeee
Confidence 6677899999999998 9999999999999999999999999999999998 89999999999
Q ss_pred ccccc
Q psy16887 153 KLNNM 157 (160)
Q Consensus 153 ~l~~~ 157 (160)
+||-|
T Consensus 760 nLNs~ 764 (1027)
T KOG3580|consen 760 NLNSA 764 (1027)
T ss_pred ccCCC
Confidence 99987
No 8
>PLN02772 guanylate kinase
Probab=99.86 E-value=4.9e-22 Score=175.40 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=103.8
Q ss_pred ceeeccCC---CC-CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----
Q psy16887 18 YERVSLRH---PG-FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA---- 81 (160)
Q Consensus 18 Ye~V~~~~---~~-~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~---- 81 (160)
=|+|++.. ++ ..|||||+||| |++|.++|++++|..|+++ | ++|++|.+|++|||+ ++++|++
T Consensus 120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fv-s~eeFe~~i~~ 198 (398)
T PLN02772 120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFT-ERSVMEKEIKD 198 (398)
T ss_pred cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeC-CHHHHHHHHHh
Confidence 47788755 33 77899999999 7999999999999988876 5 568899999999999 9999999
Q ss_pred cccceeeeccceeecccccc-----------cccCCC-------------eEEEecCCCCCCccccccccCccch---HH
Q psy16887 82 TCLTSYGFYVDLLFGSNRSD-----------DLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVM---EN 134 (160)
Q Consensus 82 ~~fiE~~~y~~~lygts~~a-----------vldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~---e~ 134 (160)
+.|+||++|.||+|||++.+ ++|+++ ++||+.|++ ..+++.||..+.+ +.
T Consensus 199 g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPS---lEeLe~RL~~RGteseE~ 275 (398)
T PLN02772 199 GKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPS---MEELEKRLRARGTETEEQ 275 (398)
T ss_pred CccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCC---HHHHHHHHHhcCCCCHHH
Confidence 45999999999999999754 444432 778887775 5556667654422 22
Q ss_pred HH--------HHHhC--CCCCcceecccccccccC
Q psy16887 135 VK--------TLREK--PGNSHGICHPVKLNNMFS 159 (160)
Q Consensus 135 ~k--------~l~er--~~~~~~~~~~v~l~~~~~ 159 (160)
++ +|... +.+.+++..|.+|+.|+.
T Consensus 276 I~kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~ 310 (398)
T PLN02772 276 IQKRLRNAEAELEQGKSSGIFDHILYNDNLEECYK 310 (398)
T ss_pred HHHHHHHHHHHHhhccccCCCCEEEECCCHHHHHH
Confidence 22 12111 345677888889998763
No 9
>KOG0707|consensus
Probab=99.79 E-value=5.7e-20 Score=152.08 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=107.3
Q ss_pred CCCCCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccc
Q psy16887 25 HPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVD 92 (160)
Q Consensus 25 ~~~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~ 92 (160)
.|+.-+||||+||+ +.++..||++++|+.|+++ | +||.+|.+|.+|||+ +++.|+. +.|||+..+.|
T Consensus 33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs-~~~~~~s~i~~~~fiE~a~~~g 111 (231)
T KOG0707|consen 33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFS-TTEEFLSMIKNNEFIEFATFSG 111 (231)
T ss_pred CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceec-cHHHHHHHhhhhhhhhhhhhhc
Confidence 34566999999999 5899999999999999887 5 679999999999999 9999999 44999999999
Q ss_pred eeecccccc-----------cccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC-------
Q psy16887 93 LLFGSNRSD-----------DLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK------- 141 (160)
Q Consensus 93 ~lygts~~a-----------vldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er------- 141 (160)
|+|||++.+ ++||. ++.+|+.|++ ++.++.|++.+.++...+|.+|
T Consensus 112 n~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps---~~~~e~rl~~rgte~~~~l~~r~~sa~~e 188 (231)
T KOG0707|consen 112 NKYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPS---IKILEERLRARGTETEESLLKRLKSAEEE 188 (231)
T ss_pred ccCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCc---chhHHHHhhccCcchHHHHHHHHHhhhhh
Confidence 999998755 34432 2777777775 7778888887777777777665
Q ss_pred ------CCCCcceecc-cccccccC
Q psy16887 142 ------PGNSHGICHP-VKLNNMFS 159 (160)
Q Consensus 142 ------~~~~~~~~~~-v~l~~~~~ 159 (160)
++.+|+...+ .+|++|.+
T Consensus 189 ~~~~~~~g~~d~~~~ns~~lee~~k 213 (231)
T KOG0707|consen 189 FEILENSGSFDLVIVNSDRLEEAYK 213 (231)
T ss_pred hccccCCccccceecCCCchhhhhh
Confidence 6678888887 88888753
No 10
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.59 E-value=2.5e-15 Score=120.98 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=63.9
Q ss_pred CCCCCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccc
Q psy16887 25 HPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVD 92 (160)
Q Consensus 25 ~~~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~ 92 (160)
.|...+.|||+||| |++|.++|.+..+ .|.++ | ++|++|.+|++|||+ |+++|+. +.|+||+++.|
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv-~~~~f~~~~~~~~~le~~~~~g 86 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFV-TPEEFREMISQNELLEWAEVYG 86 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeC-CHHHHHHHHHcCCcEEEEEEcC
Confidence 35678899999999 7999999988765 46555 4 567899999999999 9999977 45999999999
Q ss_pred eeecccccc
Q psy16887 93 LLFGSNRSD 101 (160)
Q Consensus 93 ~lygts~~a 101 (160)
|+|||++.+
T Consensus 87 ~~YGt~~~~ 95 (206)
T PRK14738 87 NYYGVPKAP 95 (206)
T ss_pred ceecCCHHH
Confidence 999999754
No 11
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.39 E-value=1e-12 Score=99.96 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=64.3
Q ss_pred cEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccc
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSN 98 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts 98 (160)
||+|+||+ |++|.++|.+.+|..|+.. + +++++|.+|++|+|+ +++.|.+ +.|+|+++|.||+||++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v-~~~~~~~~~~~~~f~e~~~~~~~~yg~~ 79 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFV-SKEEFERLIENGEFLEWAEFHGNYYGTS 79 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEe-CHHHHHHHHHcCCeEEEEEEcCEEecCc
Confidence 68999999 7999999999999887765 3 567899999999999 9999988 45999999999999999
Q ss_pred cccccc
Q psy16887 99 RSDDLD 104 (160)
Q Consensus 99 ~~avld 104 (160)
+.++..
T Consensus 80 ~~~i~~ 85 (137)
T cd00071 80 KAAVEE 85 (137)
T ss_pred HHHHHH
Confidence 877654
No 12
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.16 E-value=7.3e-11 Score=91.39 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=60.2
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCcccc-c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP-H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSN 98 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~-~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts 98 (160)
++|+|+||+ |+++.+.|...+|..+... + +|+.+|.+|.+|+|+ +.+.|.. +.|++++.+.+++||++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFV-SKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEe-cHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 579999999 7999999999988854332 3 578899999999999 8888877 45999999999999998
Q ss_pred ccc
Q psy16887 99 RSD 101 (160)
Q Consensus 99 ~~a 101 (160)
..+
T Consensus 81 ~~~ 83 (180)
T TIGR03263 81 KSP 83 (180)
T ss_pred HHH
Confidence 643
No 13
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.96 E-value=7.8e-10 Score=87.40 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=60.1
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG 96 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg 96 (160)
.+.|+|+||+ |++|.+.|...+| .|... + +|+.||.+|.+|+|+ +.++|.. +.|++++.+.+|.||
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFV-SKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEc-CHHHHHHHHHcCCcEEEEEECCcccc
Confidence 4679999998 7999999999998 55554 3 467899999999999 9999888 459999999999999
Q ss_pred cccc
Q psy16887 97 SNRS 100 (160)
Q Consensus 97 ts~~ 100 (160)
++..
T Consensus 83 ~~~~ 86 (205)
T PRK00300 83 TPRS 86 (205)
T ss_pred CcHH
Confidence 9854
No 14
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.10 E-value=4.9e-06 Score=64.45 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=57.1
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCC----cccccCCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDK----FSAPHPRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSN 98 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~----F~~~~~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts 98 (160)
+.++|+||+ |+++.+.|....+.. |..+++.|+.+.+|.+|+|+ +.++|.. +.|.++.++.++.||++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIAL-STEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCcccccc-CHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 358999999 699999998876532 44456788888999999999 9999876 33999999999999998
Q ss_pred c
Q psy16887 99 R 99 (160)
Q Consensus 99 ~ 99 (160)
.
T Consensus 81 ~ 81 (179)
T TIGR02322 81 A 81 (179)
T ss_pred H
Confidence 5
No 15
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.82 E-value=1.4e-05 Score=62.88 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=53.1
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCccccc--CCcccccCCceeeEEecHHHHhh----cccceeeeccceeeccccc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFSAPH--PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSNRS 100 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~--~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts~~ 100 (160)
..|+|+||+ |+||.+.|....+..|...+ ..|+....+.+|+++ +.++|.+ +.|.++..+.||+|||++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIAL-SEQEFFTRAGQNLFALSWHANGLYYGVGIE 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeE-cHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence 468999999 79999999887654454543 344445567889999 7777655 4588777999999999974
No 16
>PRK08356 hypothetical protein; Provisional
Probab=97.81 E-value=1.1e-05 Score=64.12 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=51.4
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCcccc---c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP---H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG 96 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~---~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg 96 (160)
..|+|+||+ |+|+.++| ++ ++.+ . .++..+.+|.+|+|+ +...|+. +.|+|+|++.++.||
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l-~~----~g~~~is~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~e~g~~~~~~yG 79 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF-EE----KGFCRVSCSDPLIDLLTHNVSDYSWV-PEVPFKGEPTRENLIELGRYLKEKYG 79 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH-HH----CCCcEEeCCCcccccccccccccccc-cHHHHhhccccccHHHHHHHHHHhcC
Confidence 458899998 79999999 44 2333 2 246788999999999 9988876 459999999999999
Q ss_pred cc
Q psy16887 97 SN 98 (160)
Q Consensus 97 ts 98 (160)
|+
T Consensus 80 ~~ 81 (195)
T PRK08356 80 ED 81 (195)
T ss_pred cH
Confidence 97
No 17
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.004 Score=50.38 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=71.9
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCC--ccccc--CCcccccCCceeeEEecHHHHhh----cccceeeeccceeecc
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDK--FSAPH--PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGS 97 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~--F~~~~--~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygt 97 (160)
-|-|+++||| ||+|.+-+...++.. |-+.+ -.|+.+-.|-+.-=+ |..+|.. +.|--.=+-+|..||.
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~av-s~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDAL-SEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCccccccc-CHHHHHHHhhcCceeEEehhcCccccC
Confidence 4679999999 799998877777765 44443 456665556666667 8888877 4588888899999999
Q ss_pred cccccccCC-C-----------------------eEEEecCCCCCCccccccccCccchHHHHHHHhC
Q psy16887 98 NRSDDLDSN-P-----------------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK 141 (160)
Q Consensus 98 s~~avldi~-~-----------------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er 141 (160)
...--.++. + .||+-.++ ..+.+||.-+..|+.+++..|
T Consensus 84 p~eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p-----~VLaqRL~~RGREs~eeI~aR 146 (192)
T COG3709 84 PAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASP-----EVLAQRLAERGRESREEILAR 146 (192)
T ss_pred chhHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCH-----HHHHHHHHHhccCCHHHHHHH
Confidence 864332221 1 22222222 446677777777777777766
No 18
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.03 E-value=0.018 Score=49.73 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=42.9
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHHHHhh----cccceee
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYG 88 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~ 88 (160)
+..|+|+||+ |.+|-.+|.+.++...-.+ + .|+++|.+|+.|||+ +...++. +.|++++
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhli-d~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLI-DILDPTESYSVADFQRDA 82 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEee-cccChhhcccHHHHHHHH
Confidence 3568999999 6899999999887643222 2 468899999999999 6544443 4466655
No 19
>KOG3812|consensus
Probab=87.21 E-value=0.4 Score=42.91 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=31.2
Q ss_pred CCeEEEecCCCCCCccccccccCccchHHHHHHHhC-----------CCCCcceecccccccc
Q psy16887 106 NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-----------PGNSHGICHPVKLNNM 157 (160)
Q Consensus 106 ~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-----------~~~~~~~~~~v~l~~~ 157 (160)
.||.++++-.+.|.+ .+-|+-+++-.+|.|.-+ ++-++.+....+|++|
T Consensus 284 aPI~v~ikvSspKvL---qrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqLedA 343 (475)
T KOG3812|consen 284 APIIVYIKVSSPKVL---QRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDA 343 (475)
T ss_pred cceEEEEEeCCHHHH---HHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccHHHH
Confidence 469999988765444 333443444455555554 6777777777788776
No 20
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=85.86 E-value=1 Score=38.66 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=34.1
Q ss_pred cEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEE
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFF 73 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv 73 (160)
.|+|+||+ |.+|-.+|.+.++...-++ + .|+++|.+|+.|||+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhli 59 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLI 59 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEE
Confidence 37999998 6899999999987543332 1 357789999999998
No 21
>PLN02840 tRNA dimethylallyltransferase
Probab=60.53 E-value=13 Score=33.74 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=33.7
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEE
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFF 73 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv 73 (160)
..|+|+||. |.+|-.+|.+.+....-.+ . .|...|..|+.||++
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhli 81 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLI 81 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeE
Confidence 358999998 6899999999987544332 1 355678999999997
No 22
>KOG3209|consensus
Probab=59.19 E-value=4.7 Score=39.36 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=28.4
Q ss_pred cccccCCceeeEEecHHHHhh----cccceeeeccceeeccccc
Q psy16887 61 RRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGSNRS 100 (160)
Q Consensus 61 r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygts~~ 100 (160)
+.+|.. +|.|. +-..|.- +||+|.+.|.+|+|||.+.
T Consensus 75 ~~~~~~--d~~fs-~~~~~l~l~~~~~~l~~~~~~~~~ygtPkP 115 (984)
T KOG3209|consen 75 LEGEVP--DYSFS-TVPIFLCLEVSGCLLEFGTYESNYYGTPKP 115 (984)
T ss_pred cccccC--ccccc-cchhhheeeecceeecccCcccCCCCCCCC
Confidence 334555 99998 5554433 6799999999999999975
No 23
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=55.92 E-value=14 Score=28.41 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.5
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
+-|+|+||+ |.|+-+.|.+..+..|
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~ 30 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPW 30 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 568999998 7999999999987655
No 24
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=53.15 E-value=14 Score=29.26 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=20.0
Q ss_pred EEEEccC---hHHHHHHHHhhCCCCccccc
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPDKFSAPH 58 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~~F~~~~ 58 (160)
|+|+||+ |+|+-++|.+. |+.+|
T Consensus 3 iiilG~pGaGK~T~A~~La~~----~~i~h 28 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK----LGLPH 28 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH----hCCcE
Confidence 7999999 69999999998 66666
No 25
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=49.73 E-value=14 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=16.8
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|.||+ |+|+-++|.+.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999 799999999875
No 26
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=46.68 E-value=21 Score=26.28 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=22.6
Q ss_pred CcEEEEccC--hHHHHH-HHHhhCCCCcccc
Q psy16887 30 RPVVLFGPV--ADLARD-KLLKDFPDKFSAP 57 (160)
Q Consensus 30 RPvVi~GPs--k~~l~~-~L~~~~P~~F~~~ 57 (160)
|||+|+|.. +.|+.. .|+..+|+..+..
T Consensus 1 ~pvfI~G~~RSGTTlL~~~Ll~~~~~~~~~~ 31 (215)
T PF13469_consen 1 RPVFIVGMPRSGTTLLSRRLLSQHPQIWGVH 31 (215)
T ss_dssp SCEEEECSTTSSHHHHH-HHHCTSTTEECGC
T ss_pred CeEEEECCCCCcHHHHHHHHHccCCCeeecC
Confidence 799999986 688887 9999999855443
No 27
>PRK00098 GTPase RsgA; Reviewed
Probab=46.19 E-value=24 Score=29.92 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=20.4
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDK 53 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~ 53 (160)
.+.++|+||+ |++|.+.|+......
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~ 191 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELK 191 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 4578999999 799999999876543
No 28
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=43.77 E-value=25 Score=24.38 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=17.0
Q ss_pred EEEEccC---hHHHHHHHHhhCCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~ 52 (160)
|+|+|+. |.+|.++|+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 7899998 79999999987654
No 29
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=43.41 E-value=28 Score=25.00 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=17.9
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|+++||+ |+++-+.|.+..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 7899998 7999999998877
No 30
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=42.65 E-value=23 Score=29.22 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=19.4
Q ss_pred CCCCCcEEEEccC-hHHHHHHHHhhC
Q psy16887 26 PGFIRPVVLFGPV-ADLARDKLLKDF 50 (160)
Q Consensus 26 ~~~~RPvVi~GPs-k~~l~~~L~~~~ 50 (160)
-+.-||+||.|=| +..+..+|+++.
T Consensus 91 ~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 91 YNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred cCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 3566999999999 566777777764
No 31
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=40.79 E-value=27 Score=28.49 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCCCCCcEEEEccC---hHHHHHHHHhhCCCC
Q psy16887 25 HPGFIRPVVLFGPV---ADLARDKLLKDFPDK 53 (160)
Q Consensus 25 ~~~~~RPvVi~GPs---k~~l~~~L~~~~P~~ 53 (160)
.|.|-+-|.|+||- |++|-++|...+-..
T Consensus 4 rp~F~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 4 RPFFVKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred chhhheeeeeecCcccChHHHHHHHHHHhCCC
Confidence 46688899999995 799999999986653
No 32
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.46 E-value=27 Score=29.46 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=19.2
Q ss_pred CCCCcEEEEccC---hHHHHHHHHhhC-CCCc
Q psy16887 27 GFIRPVVLFGPV---ADLARDKLLKDF-PDKF 54 (160)
Q Consensus 27 ~~~RPvVi~GPs---k~~l~~~L~~~~-P~~F 54 (160)
...|||+|+||+ |..+.+.+++.. ++.|
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~ 62 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKY 62 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCcccc
Confidence 467999999998 566666555544 4443
No 33
>KOG4152|consensus
Probab=39.19 E-value=22 Score=33.97 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=47.8
Q ss_pred CccceeeccCCCCCCC------------cEEEEccChHHHHHHHHhhCCC--C-cccc----cCCcccccCCceeeEEec
Q psy16887 15 FPAYERVSLRHPGFIR------------PVVLFGPVADLARDKLLKDFPD--K-FSAP----HPRRRNQEKFRWSSFFNS 75 (160)
Q Consensus 15 ~~~Ye~V~~~~~~~~R------------PvVi~GPsk~~l~~~L~~~~P~--~-F~~~----~~~r~~E~~g~~Y~Fv~s 75 (160)
.+-|.+|+...-..+| .+||+|--.+.+.|.|-.-+-. . |.-+ .||.. -.|-||+.
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgc-----AA~Gfvcd 90 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGC-----AAFGFVCD 90 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCch-----hhcceEec
Confidence 4567888864322222 3689999888888888653332 1 2111 13321 34557733
Q ss_pred HHHHhh-cccceeeeccceeeccc
Q psy16887 76 LTKVSA-TCLTSYGFYVDLLFGSN 98 (160)
Q Consensus 76 ~~~~e~-~~fiE~~~y~~~lygts 98 (160)
=..+-. +.++|||.|++.||+--
T Consensus 91 GtrilvFGGMvEYGkYsNdLYELQ 114 (830)
T KOG4152|consen 91 GTRILVFGGMVEYGKYSNDLYELQ 114 (830)
T ss_pred CceEEEEccEeeeccccchHHHhh
Confidence 333333 66999999999999864
No 34
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=38.99 E-value=23 Score=27.70 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.4
Q ss_pred CCcEEEEccC--hHHHHHHHHhhCCCCccc
Q psy16887 29 IRPVVLFGPV--ADLARDKLLKDFPDKFSA 56 (160)
Q Consensus 29 ~RPvVi~GPs--k~~l~~~L~~~~P~~F~~ 56 (160)
+.||+|+|.. +.++...|+..+|+.+..
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~ 30 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSF 30 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTET
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCcccccc
Confidence 4689999987 689999999999998876
No 35
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=35.65 E-value=33 Score=27.06 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.6
Q ss_pred CcEEEEccC---hHHHHHHHHhhC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
+-+|++||| |++|.+.|+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 779999999 799999998863
No 36
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=35.61 E-value=36 Score=27.39 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=22.1
Q ss_pred CCCcEEEEccCh--HHHHHHHHhhCCCCcccc
Q psy16887 28 FIRPVVLFGPVA--DLARDKLLKDFPDKFSAP 57 (160)
Q Consensus 28 ~~RPvVi~GPsk--~~l~~~L~~~~P~~F~~~ 57 (160)
.+||+.|+||.. +++++++++- -++|-.+
T Consensus 35 AkrPLlivGp~~~dee~~E~~vKi-~ekfnip 65 (170)
T COG1880 35 AKRPLLIVGPLALDEELLELAVKI-IEKFNIP 65 (170)
T ss_pred cCCceEEecccccCHHHHHHHHHH-HHhcCCc
Confidence 679999999983 6778777664 5677665
No 37
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=34.58 E-value=31 Score=25.72 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.9
Q ss_pred CCCCcEEEEccC--hHHHHHHHHhhCC
Q psy16887 27 GFIRPVVLFGPV--ADLARDKLLKDFP 51 (160)
Q Consensus 27 ~~~RPvVi~GPs--k~~l~~~L~~~~P 51 (160)
...++|||.||- |+.+.+.|..+++
T Consensus 72 ~~~~~iIiaGPGf~k~~f~~~l~~~~~ 98 (133)
T PF03464_consen 72 DDVKCIIIAGPGFTKEEFYKYLKAEAR 98 (133)
T ss_dssp TTCSEEEEEESTTHHHHHHHHHHHHHH
T ss_pred ccccEEEEECCHHHHHHHHHHHHHhhH
Confidence 467899999998 8999999988877
No 38
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=34.08 E-value=41 Score=24.34 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.0
Q ss_pred cEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
||+|.||+ |.++.+.|.+.....+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence 79999999 6888888877765444
No 39
>PF05729 NACHT: NACHT domain
Probab=32.53 E-value=48 Score=23.94 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=14.9
Q ss_pred CcEEEEccC---hHHHHHHHHhh
Q psy16887 30 RPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~ 49 (160)
|+++|.|+. |.++..+++..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHH
Confidence 789999998 57766666543
No 40
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=32.19 E-value=50 Score=24.70 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.6
Q ss_pred EEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
|+|+|++ |.+|.++|...++...
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~~~~~ 27 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKV 27 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccc
Confidence 7999998 7899999987755543
No 41
>KOG1969|consensus
Probab=31.79 E-value=28 Score=34.34 Aligned_cols=37 Identities=30% Similarity=0.552 Sum_probs=21.1
Q ss_pred CCccceecCCcccC----ccceeecc-CC-----CCCCCcEEEEccC
Q psy16887 2 HWDDVVFGDSISKF----PAYERVSL-RH-----PGFIRPVVLFGPV 38 (160)
Q Consensus 2 ~~~~~~~~~~~~~~----~~Ye~V~~-~~-----~~~~RPvVi~GPs 38 (160)
-||.+|||--.+.. ..|+.-+. .. .+..+-++||||.
T Consensus 289 ~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 289 QWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred hhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 49999999333222 24555332 11 1233447999997
No 42
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=30.76 E-value=55 Score=24.79 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.1
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|+|+||+ |+|+-++|.+.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 7899998 6999999988764
No 43
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=30.53 E-value=57 Score=22.59 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=16.1
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|.|++ |.||.+.|.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899998 689888888875
No 44
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.49 E-value=43 Score=28.45 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=13.3
Q ss_pred CCcEEEEccC---hHHHHHHH
Q psy16887 29 IRPVVLFGPV---ADLARDKL 46 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L 46 (160)
-.-|+|+||| |+|+.+-|
T Consensus 28 Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 3458999999 57776654
No 45
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=30.24 E-value=55 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.8
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|+|+|+. |.+|.++|...+.
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcc
Confidence 7899998 7999999987653
No 46
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=29.94 E-value=54 Score=29.31 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=21.8
Q ss_pred CCCCCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 26 PGFIRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 26 ~~~~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
+.+.|-|+|+|++ |.||.++|...+.
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4577889999997 7999999998753
No 47
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=29.36 E-value=66 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=20.2
Q ss_pred cEEEEccC---hHHHHHHHHhhCCCCcccc
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPDKFSAP 57 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~~F~~~ 57 (160)
+|+|+||+ |+++-+.|.+...-.|-.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 58999998 6899999988765544433
No 48
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=29.10 E-value=55 Score=24.64 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=16.9
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+||+ |+|+.++|.+.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899998 699999999875
No 49
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=29.09 E-value=75 Score=27.76 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=25.2
Q ss_pred CCCCCc--EEEEccC---hHHHHHHHHhhCCCCccc
Q psy16887 26 PGFIRP--VVLFGPV---ADLARDKLLKDFPDKFSA 56 (160)
Q Consensus 26 ~~~~RP--vVi~GPs---k~~l~~~L~~~~P~~F~~ 56 (160)
|...|+ ++|+|++ |..+.+|....||..+..
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~ 91 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE 91 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC
Confidence 555553 9999999 789999999999987643
No 50
>COG3801 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.00 E-value=52 Score=25.11 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=24.5
Q ss_pred cEEEEccChHHHHHHHHhhCCCCcccc
Q psy16887 31 PVVLFGPVADLARDKLLKDFPDKFSAP 57 (160)
Q Consensus 31 PvVi~GPsk~~l~~~L~~~~P~~F~~~ 57 (160)
|||+.=|+...++.+|++.-|+.|-..
T Consensus 52 ~vvlav~~de~~K~mLleaeP~iyftt 78 (124)
T COG3801 52 DVVLAVPSDEGVKFMLLEAEPGIYFTT 78 (124)
T ss_pred CeeEEeecchhHHHHHHhcCCcceecc
Confidence 599999999999999999999988665
No 51
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=28.95 E-value=58 Score=24.69 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=16.8
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|+|+||+ |+++-++|.+.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 7999997 6899999988753
No 52
>PRK08118 topology modulation protein; Reviewed
Probab=28.76 E-value=58 Score=25.12 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.0
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|+|+||+ |+|+-++|.+...
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 8999998 6899999988754
No 53
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=28.03 E-value=60 Score=23.19 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.9
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|++ |.+|.++|+..
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7999998 79999999874
No 54
>PRK14532 adenylate kinase; Provisional
Probab=27.74 E-value=68 Score=24.54 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
|+|+||+ |+|+-.+|.+.+.-.+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~ 28 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQ 28 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 8999998 7999999998765333
No 55
>PRK14531 adenylate kinase; Provisional
Probab=27.71 E-value=65 Score=24.87 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=17.6
Q ss_pred CcEEEEccC---hHHHHHHHHhhC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
+-|+|+||+ |+|+-++|.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999998 689999998875
No 56
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=27.53 E-value=65 Score=24.31 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.4
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|.|+||+ |.++.++|++..-
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 6899998 6888888887755
No 57
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=27.49 E-value=53 Score=23.42 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.0
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|++ |.+|.++|....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 48999998 799999998763
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=27.40 E-value=80 Score=21.57 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=19.5
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
..++++|.||+ |.++.+.+.....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45789999999 6888888888764
No 59
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=27.27 E-value=61 Score=23.63 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.2
Q ss_pred CcEEEEccC---hHHHHHHHHhhCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
|.|+|+|++ |.+|.++|....+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 458999998 7999999988654
No 60
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=27.20 E-value=62 Score=23.07 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.6
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+||+ |.++.++|+..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7899998 78999999864
No 61
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=27.05 E-value=64 Score=25.43 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=16.2
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+||+ |+|+-.+|.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999997 689999988765
No 62
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=26.78 E-value=66 Score=26.63 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=19.7
Q ss_pred CCCCCCCcEEEEccC---hHHHHHHH-HhhCCC
Q psy16887 24 RHPGFIRPVVLFGPV---ADLARDKL-LKDFPD 52 (160)
Q Consensus 24 ~~~~~~RPvVi~GPs---k~~l~~~L-~~~~P~ 52 (160)
.+|..--.+||+||| |++|.+-| +-+-|+
T Consensus 23 l~~~~getlvllgpsgagkssllr~lnlle~p~ 55 (242)
T COG4161 23 LDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR 55 (242)
T ss_pred ecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC
Confidence 456667789999999 57777655 333443
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=26.32 E-value=64 Score=23.17 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=18.1
Q ss_pred EEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
|+|+|++ |.+|.++|.....+.|
T Consensus 3 i~i~G~~~~GKssl~~~l~~~~~~~~ 28 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTGIETDRL 28 (164)
T ss_pred EEEEecCCCCHHHHHHHHhCcccccc
Confidence 7899998 7999999986544444
No 64
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=26.20 E-value=64 Score=23.33 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=16.4
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+++||+ |.++.++|+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899998 789999998764
No 65
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=25.95 E-value=1e+02 Score=23.21 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=19.1
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
..-|+|+||. |.+|.++|....+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~ 45 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA 45 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 3448999998 79999999876544
No 66
>PF13173 AAA_14: AAA domain
Probab=25.81 E-value=82 Score=22.74 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=19.2
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
.+.++|.||. |.++...++++..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568999998 7899999998866
No 67
>PRK08233 hypothetical protein; Provisional
Probab=25.81 E-value=77 Score=23.67 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=19.0
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
.-|.|.||+ |+|+-++|.+.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 347788998 79999999998874
No 68
>PRK06762 hypothetical protein; Provisional
Probab=25.61 E-value=72 Score=23.82 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=19.6
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
++-|+|+|++ |+|+-++|.+.+|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999998 78999999988753
No 69
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=25.51 E-value=73 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=20.4
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCccc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFSA 56 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~ 56 (160)
|-|+|-||| |++|-+-|...+|+-|-.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~ 31 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLH 31 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEE
Confidence 458999998 799999999999987543
No 70
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=25.48 E-value=71 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=16.3
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|++ |++|.+.|....
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~ 23 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKK 23 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 7899998 799999999743
No 71
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=25.48 E-value=67 Score=24.74 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=19.3
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
.-||++||. |.++..+|+.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 458999998 79999999987555
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=25.44 E-value=68 Score=23.30 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=15.9
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 37999998 68999999864
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=25.10 E-value=84 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=17.9
Q ss_pred EEEEccC---hHHHHHHHHhh---CCCCc
Q psy16887 32 VVLFGPV---ADLARDKLLKD---FPDKF 54 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~---~P~~F 54 (160)
|+|+|++ |.+|..+|... +|..+
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~~~~~~~~~ 31 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNY 31 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcCccC
Confidence 7899998 68999999853 55544
No 74
>PRK14530 adenylate kinase; Provisional
Probab=24.98 E-value=75 Score=25.14 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=17.9
Q ss_pred EEEEccC---hHHHHHHHHhhCCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~ 52 (160)
|+|+||+ |+|+-++|.+.+.-
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 8999998 68999999888753
No 75
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=24.95 E-value=84 Score=20.45 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=16.2
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+||+ |.++.+.|.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899998 689999888876
No 76
>PRK03839 putative kinase; Provisional
Probab=24.86 E-value=81 Score=23.99 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=19.0
Q ss_pred cEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
.|+|+||+ |+|+-++|.+.+.-.|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 38999998 6999999988864444
No 77
>KOG3354|consensus
Probab=24.81 E-value=89 Score=25.49 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=32.0
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCCCCcccccCCcccccCCceeeEEecHHHHhh
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAPHPRRRNQEKFRWSSFFNSLTKVSA 81 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~~~r~~E~~g~~Y~Fv~s~~~~e~ 81 (160)
++--+|+.|++ |+|+-..|..+.--+|- +|-+||=-+.+++|.+
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~----------dgDd~Hp~~NveKM~~ 57 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFI----------DGDDLHPPANVEKMTQ 57 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCccc----------ccccCCCHHHHHHHhc
Confidence 45568999999 68999999888776663 4444444457778877
No 78
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=24.32 E-value=72 Score=22.92 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=16.2
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+++|++ |.++.++|+...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999998 789999998753
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=24.28 E-value=80 Score=22.75 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=16.6
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|++ |.+|.++|+...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~ 24 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999998 799999998653
No 80
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=24.12 E-value=1.1e+02 Score=20.49 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=20.6
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
+.++|+||. |.++...|+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 568999998 6899999988877754
No 81
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=24.03 E-value=63 Score=28.60 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.1
Q ss_pred CcEEEEccC---hHHHHHHHHhh
Q psy16887 30 RPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~ 49 (160)
.=+||+||| |+|+.+.+.--
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999 68998887653
No 82
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=23.98 E-value=67 Score=22.56 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=15.7
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+||+ |.+|.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 7899998 79999999875
No 83
>PRK00131 aroK shikimate kinase; Reviewed
Probab=23.86 E-value=1.2e+02 Score=22.30 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=19.9
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
+..|+|+||+ |+++-+.|.+...-.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~ 32 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDF 32 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 4679999998 6888888888764434
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=23.51 E-value=79 Score=22.90 Aligned_cols=18 Identities=6% Similarity=0.344 Sum_probs=15.5
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|++ |.++.++|+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7899998 79999999854
No 85
>PRK07261 topology modulation protein; Provisional
Probab=23.21 E-value=83 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=16.2
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+||+ |+|+-++|.+.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899998 699999988764
No 86
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=23.05 E-value=1.1e+02 Score=23.65 Aligned_cols=22 Identities=23% Similarity=0.458 Sum_probs=18.3
Q ss_pred CCcEEEEccC---hHHHHHHHHhhC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
.+.|+|+||+ |+++-+.|.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999998 689888888764
No 87
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=22.87 E-value=76 Score=25.01 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=22.9
Q ss_pred CCCCCCCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 24 RHPGFIRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 24 ~~~~~~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
++.+..+-|.|+||+ |.++.++|+.....
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455667778999998 68999999988553
No 88
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=22.41 E-value=86 Score=25.83 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=19.4
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
+-|+|+||+ |+|+-++|.+.+|+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~ 28 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPK 28 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCC
Confidence 457889998 79999999999863
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=22.16 E-value=85 Score=22.97 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.8
Q ss_pred EEEEccC---hHHHHHHHHh
Q psy16887 32 VVLFGPV---ADLARDKLLK 48 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~ 48 (160)
|+|+|++ |.+|..+|+.
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 7999998 7899999875
No 90
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=22.12 E-value=87 Score=22.51 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=15.6
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+++|++ |.++.++|...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 7899998 78999999865
No 91
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=22.09 E-value=88 Score=23.38 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.2
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.||.+.|.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 7899986 79999999987
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=22.06 E-value=87 Score=23.04 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.8
Q ss_pred CcEEEEccC---hHHHHHHHHhh
Q psy16887 30 RPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~ 49 (160)
+-|+|+|+. |.+|..+|...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 459999998 68999999864
No 93
>PRK14527 adenylate kinase; Provisional
Probab=21.77 E-value=93 Score=24.04 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=17.0
Q ss_pred cEEEEccC---hHHHHHHHHhhCC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P 51 (160)
-|+|+||+ |+|+-.+|.+.+.
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 38999998 6898888887753
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=21.65 E-value=1e+02 Score=23.41 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=18.4
Q ss_pred cEEEEccC---hHHHHHHHH-hhCCCCc
Q psy16887 31 PVVLFGPV---ADLARDKLL-KDFPDKF 54 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~-~~~P~~F 54 (160)
-|+|+||. |.+|.++|. ..+++.+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~ 30 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEY 30 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccc
Confidence 48999998 789999997 5555543
No 95
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=21.51 E-value=1.1e+02 Score=22.69 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=13.4
Q ss_pred CCCCCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 26 PGFIRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 26 ~~~~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
....+.++|.||+ |.++.++++.....
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456889999999 57766666554443
No 96
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=21.10 E-value=96 Score=22.51 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=16.3
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|+. |.++.++|+...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899998 789999998763
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=20.85 E-value=99 Score=22.02 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.8
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|++ |.++.++|+..
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7899998 79999999875
No 98
>PTZ00088 adenylate kinase 1; Provisional
Probab=20.57 E-value=95 Score=25.52 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=16.5
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+||+ |+|+-.+|.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999998 689999998875
No 99
>PRK06217 hypothetical protein; Validated
Probab=20.47 E-value=1.1e+02 Score=23.59 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=17.1
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|+|+|++ |+|+-++|.+...
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 8999998 6899999988753
No 100
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=20.44 E-value=99 Score=22.13 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.3
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+++|++ |.++.++|+..
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7899998 78999999853
No 101
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=20.38 E-value=98 Score=22.60 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.1
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|++ |.++.++|+..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 38999998 69999999864
No 102
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=20.33 E-value=1.2e+02 Score=22.97 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=17.8
Q ss_pred CCCc-EEEEccC---hHHHHHHHHhh
Q psy16887 28 FIRP-VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 28 ~~RP-vVi~GPs---k~~l~~~L~~~ 49 (160)
..+| |+|+|++ |.++.++|...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3344 8999998 79999999875
No 103
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=20.21 E-value=96 Score=22.53 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=15.7
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.++.++|+..
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 7899998 79999999875
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=20.16 E-value=1.1e+02 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=17.8
Q ss_pred CcEEEEccC---hHHHHHHHHhhCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
.-|+|+|++ |.+|.++|...+.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~ 39 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI 39 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC
Confidence 448999998 6899999987633
No 105
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.03 E-value=1.1e+02 Score=23.99 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.5
Q ss_pred CcEEEEccC---hHHHHHHHHhh
Q psy16887 30 RPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~ 49 (160)
|-|+|+|++ |.+|.++|+..
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~ 23 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQ 23 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Confidence 568999998 79999999875
Done!