Query psy16887
Match_columns 160
No_of_seqs 146 out of 522
Neff 5.6
Searched_HMMs 29240
Date Sat Aug 17 00:38:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tvt_A Disks large 1 tumor sup 100.0 1.5E-34 5.1E-39 244.2 9.0 144 13-159 84-268 (292)
2 1kjw_A Postsynaptic density pr 100.0 8.8E-29 3E-33 208.5 7.3 143 13-158 89-272 (295)
3 2xkx_A Disks large homolog 4; 99.9 4.5E-27 1.5E-31 217.4 8.2 143 13-158 515-698 (721)
4 1ex7_A Guanylate kinase; subst 99.9 6.8E-27 2.3E-31 185.7 5.2 127 29-159 1-176 (186)
5 3tsz_A Tight junction protein 99.9 9.3E-25 3.2E-29 190.3 3.1 134 12-158 215-371 (391)
6 3shw_A Tight junction protein 99.9 6.5E-23 2.2E-27 183.0 3.0 133 13-158 208-363 (468)
7 3kfv_A Tight junction protein 99.8 4.6E-23 1.6E-27 175.7 -0.3 141 2-158 118-280 (308)
8 3ney_A 55 kDa erythrocyte memb 99.8 5.1E-19 1.7E-23 141.8 6.8 130 25-158 15-180 (197)
9 3tau_A Guanylate kinase, GMP k 99.5 2.1E-14 7.2E-19 112.9 6.9 127 28-158 7-179 (208)
10 3a00_A Guanylate kinase, GMP k 99.5 5.5E-14 1.9E-18 108.3 6.8 126 29-158 1-175 (186)
11 1kgd_A CASK, peripheral plasma 99.3 2.2E-12 7.5E-17 99.0 7.6 126 28-158 4-169 (180)
12 4dey_A Voltage-dependent L-typ 99.2 4E-13 1.4E-17 115.7 -1.4 137 13-158 131-311 (337)
13 1lvg_A Guanylate kinase, GMP k 99.2 3.4E-12 1.2E-16 99.8 3.9 126 29-158 4-178 (198)
14 1s96_A Guanylate kinase, GMP k 99.2 1E-11 3.5E-16 99.7 3.0 128 27-158 14-188 (219)
15 2qor_A Guanylate kinase; phosp 98.9 1.4E-09 4.7E-14 84.5 6.3 73 27-100 10-94 (204)
16 3lnc_A Guanylate kinase, GMP k 98.5 6.2E-08 2.1E-12 76.3 4.1 71 29-101 27-110 (231)
17 3tr0_A Guanylate kinase, GMP k 98.3 3.8E-07 1.3E-11 69.5 2.8 69 30-100 8-88 (205)
18 1z6g_A Guanylate kinase; struc 97.6 9.9E-05 3.4E-09 58.0 6.4 71 28-99 22-104 (218)
19 2j41_A Guanylate kinase; GMP, 97.0 0.0011 3.9E-08 49.9 5.6 69 29-99 6-87 (207)
20 1znw_A Guanylate kinase, GMP k 96.2 0.0085 2.9E-07 46.0 6.0 71 28-99 19-102 (207)
21 3exa_A TRNA delta(2)-isopenten 94.8 0.0049 1.7E-07 52.6 -0.1 51 30-81 4-70 (322)
22 3eph_A TRNA isopentenyltransfe 94.8 0.0045 1.5E-07 54.4 -0.4 58 30-88 3-80 (409)
23 3foz_A TRNA delta(2)-isopenten 94.4 0.0049 1.7E-07 52.5 -1.1 53 28-81 9-77 (316)
24 3a8t_A Adenylate isopentenyltr 89.8 0.16 5.6E-06 43.3 2.7 49 30-79 41-105 (339)
25 3crm_A TRNA delta(2)-isopenten 79.5 0.43 1.5E-05 40.3 0.4 48 29-77 5-68 (323)
26 4gox_A Polyketide synthase; ol 77.6 1.8 6.2E-05 34.3 3.5 31 27-57 21-54 (313)
27 4gbm_A CURM sulfotransferase; 71.1 2.2 7.6E-05 34.1 2.5 29 29-57 32-62 (323)
28 2ze6_A Isopentenyl transferase 65.7 5 0.00017 31.6 3.5 43 31-73 3-61 (253)
29 1qhx_A CPT, protein (chloramph 62.7 6.5 0.00022 28.2 3.4 26 30-55 4-32 (178)
30 3d3q_A TRNA delta(2)-isopenten 61.7 8.8 0.0003 32.4 4.5 44 30-73 8-67 (340)
31 1gvn_B Zeta; postsegregational 60.6 7.8 0.00027 31.2 3.9 25 28-52 32-59 (287)
32 2il1_A RAB12; G-protein, GDP, 53.4 6.4 0.00022 28.7 2.0 33 17-49 7-49 (192)
33 3umf_A Adenylate kinase; rossm 52.5 8.6 0.00029 30.1 2.7 28 27-58 27-57 (217)
34 2zq5_A Putative uncharacterize 51.8 9.6 0.00033 31.8 3.1 30 28-57 90-121 (384)
35 2z6v_A Putative uncharacterize 50.3 7.2 0.00024 33.1 2.1 30 28-57 105-136 (414)
36 3kb2_A SPBC2 prophage-derived 47.0 13 0.00044 26.1 2.7 24 31-54 3-29 (173)
37 3ap1_A Protein-tyrosine sulfot 42.3 19 0.00064 29.5 3.4 31 26-56 42-75 (337)
38 3t61_A Gluconokinase; PSI-biol 40.4 24 0.00083 25.9 3.5 23 29-51 18-43 (202)
39 3dl0_A Adenylate kinase; phosp 39.3 22 0.00075 26.3 3.1 21 32-52 3-26 (216)
40 3sr0_A Adenylate kinase; phosp 37.1 18 0.00061 27.8 2.3 23 32-58 3-28 (206)
41 1ukz_A Uridylate kinase; trans 36.6 28 0.00096 25.4 3.3 24 28-51 14-40 (203)
42 3lw7_A Adenylate kinase relate 36.3 25 0.00086 24.2 2.9 20 31-51 3-25 (179)
43 3iij_A Coilin-interacting nucl 34.0 24 0.00083 25.3 2.5 24 29-52 11-37 (180)
44 1zak_A Adenylate kinase; ATP:A 33.6 26 0.0009 26.1 2.7 25 30-54 6-33 (222)
45 3fb4_A Adenylate kinase; psych 33.4 24 0.00082 26.0 2.5 20 32-51 3-25 (216)
46 1l8q_A Chromosomal replication 32.7 18 0.00062 28.7 1.8 46 3-50 10-61 (324)
47 3tlx_A Adenylate kinase 2; str 32.3 25 0.00085 27.1 2.5 21 31-51 31-54 (243)
48 1nks_A Adenylate kinase; therm 31.4 32 0.0011 24.4 2.8 22 31-52 3-27 (194)
49 2cdn_A Adenylate kinase; phosp 31.0 42 0.0014 24.5 3.4 24 29-52 20-46 (201)
50 3trf_A Shikimate kinase, SK; a 30.3 35 0.0012 24.4 2.9 23 29-51 5-30 (185)
51 2rhm_A Putative kinase; P-loop 30.1 34 0.0012 24.4 2.7 23 29-51 5-30 (193)
52 1gtv_A TMK, thymidylate kinase 29.8 22 0.00076 26.0 1.7 22 31-52 2-26 (214)
53 1zp6_A Hypothetical protein AT 29.5 32 0.0011 24.7 2.5 21 29-49 9-32 (191)
54 1y63_A LMAJ004144AAA protein; 29.5 50 0.0017 23.9 3.7 22 28-49 9-33 (184)
55 2v54_A DTMP kinase, thymidylat 29.2 41 0.0014 24.3 3.1 22 30-51 5-29 (204)
56 1ly1_A Polynucleotide kinase; 28.9 34 0.0012 24.0 2.5 20 30-49 3-25 (181)
57 1tex_A STF0 sulfotransferase; 28.7 51 0.0017 26.5 3.8 23 27-49 23-47 (287)
58 1kht_A Adenylate kinase; phosp 28.6 40 0.0014 23.9 2.9 22 30-51 4-28 (192)
59 3vaa_A Shikimate kinase, SK; s 27.8 42 0.0014 24.6 3.0 34 17-51 14-50 (199)
60 1jbk_A CLPB protein; beta barr 27.6 52 0.0018 22.7 3.3 24 27-50 41-67 (195)
61 1nn5_A Similar to deoxythymidy 27.3 26 0.00088 25.6 1.7 24 29-52 9-35 (215)
62 2plr_A DTMP kinase, probable t 26.6 37 0.0013 24.5 2.4 24 30-53 5-31 (213)
63 1kao_A RAP2A; GTP-binding prot 26.5 45 0.0016 22.5 2.8 18 32-49 6-26 (167)
64 3clv_A RAB5 protein, putative; 26.4 44 0.0015 23.3 2.8 18 32-49 10-30 (208)
65 2dyk_A GTP-binding protein; GT 26.2 48 0.0016 22.4 2.9 20 31-50 3-25 (161)
66 2zej_A Dardarin, leucine-rich 26.1 37 0.0013 24.2 2.3 19 31-49 4-25 (184)
67 2wji_A Ferrous iron transport 26.0 43 0.0015 23.4 2.6 19 31-49 5-26 (165)
68 2c95_A Adenylate kinase 1; tra 26.0 40 0.0014 24.1 2.5 24 29-52 9-35 (196)
69 2vli_A Antibiotic resistance p 25.8 47 0.0016 23.5 2.9 25 30-54 6-33 (183)
70 1wms_A RAB-9, RAB9, RAS-relate 25.8 52 0.0018 22.7 3.0 19 32-50 10-31 (177)
71 1kag_A SKI, shikimate kinase I 25.6 49 0.0017 23.2 2.9 22 30-51 5-29 (173)
72 1svi_A GTP-binding protein YSX 25.4 58 0.002 23.0 3.3 22 28-49 22-46 (195)
73 2nzj_A GTP-binding protein REM 24.8 47 0.0016 22.8 2.6 19 32-50 7-28 (175)
74 1ek0_A Protein (GTP-binding pr 24.6 51 0.0018 22.3 2.8 19 32-50 6-27 (170)
75 1z0j_A RAB-22, RAS-related pro 24.5 48 0.0016 22.6 2.6 19 32-50 9-30 (170)
76 2bdt_A BH3686; alpha-beta prot 24.3 50 0.0017 23.7 2.8 20 31-50 4-26 (189)
77 1z2a_A RAS-related protein RAB 24.3 52 0.0018 22.3 2.8 18 32-49 8-28 (168)
78 3bc1_A RAS-related protein RAB 24.0 52 0.0018 22.9 2.8 19 31-49 13-34 (195)
79 1oix_A RAS-related protein RAB 24.0 51 0.0018 23.8 2.8 20 31-50 31-53 (191)
80 1ky3_A GTP-binding protein YPT 24.0 53 0.0018 22.6 2.8 20 31-50 10-32 (182)
81 1np6_A Molybdopterin-guanine d 23.9 53 0.0018 24.4 2.9 69 30-101 7-88 (174)
82 1g16_A RAS-related protein SEC 23.7 52 0.0018 22.4 2.7 19 31-49 5-26 (170)
83 2jaq_A Deoxyguanosine kinase; 23.7 41 0.0014 24.1 2.2 21 32-52 3-26 (205)
84 2wjg_A FEOB, ferrous iron tran 23.6 50 0.0017 23.2 2.6 19 31-49 9-30 (188)
85 3pqc_A Probable GTP-binding pr 23.5 89 0.0031 21.7 4.0 21 30-50 24-47 (195)
86 2f9l_A RAB11B, member RAS onco 23.3 53 0.0018 23.6 2.8 19 31-49 7-28 (199)
87 2p65_A Hypothetical protein PF 23.2 65 0.0022 22.3 3.1 25 27-51 41-68 (187)
88 2y8e_A RAB-protein 6, GH09086P 23.1 61 0.0021 22.2 2.9 18 32-49 17-37 (179)
89 1r2q_A RAS-related protein RAB 23.0 57 0.002 22.1 2.8 18 32-49 9-29 (170)
90 2hxs_A RAB-26, RAS-related pro 23.0 59 0.002 22.4 2.9 18 32-49 9-29 (178)
91 2fn4_A P23, RAS-related protei 23.0 55 0.0019 22.5 2.7 19 31-49 11-32 (181)
92 1zd8_A GTP:AMP phosphotransfer 22.8 57 0.0019 24.4 2.9 23 30-52 8-33 (227)
93 2z0h_A DTMP kinase, thymidylat 22.8 59 0.002 23.2 2.9 20 32-51 3-25 (197)
94 1c1y_A RAS-related protein RAP 22.7 59 0.002 22.0 2.8 18 32-49 6-26 (167)
95 1ltq_A Polynucleotide kinase; 22.7 58 0.002 25.3 3.0 23 30-52 3-28 (301)
96 1z08_A RAS-related protein RAB 22.6 59 0.002 22.2 2.8 19 31-49 8-29 (170)
97 2oil_A CATX-8, RAS-related pro 22.6 57 0.0019 23.1 2.8 19 31-49 27-48 (193)
98 3zvl_A Bifunctional polynucleo 22.5 58 0.002 27.4 3.1 23 28-50 257-282 (416)
99 2erx_A GTP-binding protein DI- 22.3 56 0.0019 22.2 2.6 18 32-49 6-26 (172)
100 1r8s_A ADP-ribosylation factor 22.2 64 0.0022 21.9 2.9 19 32-50 3-24 (164)
101 1u8z_A RAS-related protein RAL 22.1 62 0.0021 21.8 2.8 20 31-50 6-28 (168)
102 3q85_A GTP-binding protein REM 22.0 58 0.002 22.2 2.6 18 32-49 5-25 (169)
103 3q72_A GTP-binding protein RAD 21.9 38 0.0013 23.2 1.6 19 32-50 5-26 (166)
104 3t5g_A GTP-binding protein RHE 21.8 70 0.0024 22.2 3.1 19 31-49 8-29 (181)
105 2lkc_A Translation initiation 21.7 66 0.0023 22.1 2.9 20 30-49 9-31 (178)
106 4eun_A Thermoresistant glucoki 21.7 62 0.0021 23.7 2.9 22 29-50 29-53 (200)
107 3ihw_A Centg3; RAS, centaurin, 21.7 61 0.0021 23.2 2.8 18 32-49 23-43 (184)
108 3uie_A Adenylyl-sulfate kinase 21.6 63 0.0021 23.6 2.9 23 29-51 25-50 (200)
109 4dsu_A GTPase KRAS, isoform 2B 21.6 62 0.0021 22.5 2.8 19 32-50 7-28 (189)
110 3t1o_A Gliding protein MGLA; G 21.5 63 0.0022 22.6 2.8 24 31-54 16-42 (198)
111 1upt_A ARL1, ADP-ribosylation 21.5 64 0.0022 22.0 2.8 20 31-50 9-31 (171)
112 3dz8_A RAS-related protein RAB 21.4 63 0.0022 22.9 2.8 20 31-50 25-47 (191)
113 3tkl_A RAS-related protein RAB 21.3 63 0.0021 22.7 2.8 20 31-50 18-40 (196)
114 1qf9_A UMP/CMP kinase, protein 21.3 64 0.0022 22.7 2.8 22 30-51 7-31 (194)
115 2p5t_B PEZT; postsegregational 21.3 70 0.0024 24.6 3.2 22 30-51 33-57 (253)
116 2g6b_A RAS-related protein RAB 21.3 64 0.0022 22.3 2.8 19 32-50 13-34 (180)
117 2a9k_A RAS-related protein RAL 21.2 64 0.0022 22.3 2.8 20 31-50 20-42 (187)
118 3bos_A Putative DNA replicatio 21.2 74 0.0025 23.1 3.2 23 28-50 51-76 (242)
119 1via_A Shikimate kinase; struc 21.1 54 0.0019 23.3 2.4 21 31-51 6-29 (175)
120 4eaq_A DTMP kinase, thymidylat 21.1 65 0.0022 24.7 3.0 24 29-52 26-52 (229)
121 2a5j_A RAS-related protein RAB 20.9 60 0.0021 23.1 2.6 20 31-50 23-45 (191)
122 2gj8_A MNME, tRNA modification 20.6 60 0.002 23.0 2.5 20 31-50 6-28 (172)
123 1z0f_A RAB14, member RAS oncog 20.5 69 0.0024 21.9 2.8 21 30-50 16-39 (179)
124 2ce2_X GTPase HRAS; signaling 20.4 68 0.0023 21.4 2.7 18 32-49 6-26 (166)
125 2efe_B Small GTP-binding prote 20.4 69 0.0024 22.1 2.8 20 31-50 14-36 (181)
126 2bwj_A Adenylate kinase 5; pho 20.3 73 0.0025 22.7 3.0 22 30-51 13-37 (199)
127 2bme_A RAB4A, RAS-related prot 20.2 67 0.0023 22.4 2.7 19 31-49 12-33 (186)
128 2cjw_A GTP-binding protein GEM 20.1 74 0.0025 23.0 3.0 18 32-49 9-29 (192)
129 3tw8_B RAS-related protein RAB 20.1 54 0.0018 22.6 2.1 19 31-49 11-32 (181)
130 1x3s_A RAS-related protein RAB 20.1 70 0.0024 22.4 2.8 20 31-50 17-39 (195)
131 1z06_A RAS-related protein RAB 20.1 69 0.0024 22.6 2.8 19 31-49 22-43 (189)
132 1m7b_A RND3/RHOE small GTP-bin 20.0 67 0.0023 22.7 2.7 19 31-49 9-30 (184)
No 1
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=100.00 E-value=1.5e-34 Score=244.21 Aligned_cols=144 Identities=25% Similarity=0.346 Sum_probs=121.1
Q ss_pred ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cc
Q psy16887 13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TC 83 (160)
Q Consensus 13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~ 83 (160)
..+++||+|+++++++.|||||+||+|++|+++|++++|++|++| | +||+||.+|++||||+++++|++ +.
T Consensus 84 ~~~~~YE~V~~~~~~~~RpvVl~Gp~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~ 163 (292)
T 3tvt_A 84 ENVLSYEAVQRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHL 163 (292)
T ss_dssp --CCCEEEEEEEECSSCCCEEEESTTHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC
T ss_pred ccccchheEEeccCCCCCeEEEeCCCHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCc
Confidence 457899999999999999999999999999999999999999887 4 67999999999999989999998 45
Q ss_pred cceeeeccceeecccc-----------cccccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHH
Q psy16887 84 LTSYGFYVDLLFGSNR-----------SDDLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLR 139 (160)
Q Consensus 84 fiE~~~y~~~lygts~-----------~avldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~ 139 (160)
||||++|.||+|||++ +++|||++ ++|||.||| ++.++++++..+++++++++
T Consensus 164 flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS---~e~L~~r~~~r~~e~~~~~~ 240 (292)
T 3tvt_A 164 FIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKS---VDSVMEMNRRMTEEQAKKTY 240 (292)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSC---HHHHHHTCTTSCTTHHHHHH
T ss_pred eEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCC---HHHHHHHHhCCCchhHHHHH
Confidence 9999999999999995 55777754 899999998 55555666666666776666
Q ss_pred hC--------CCCCcceecccccccccC
Q psy16887 140 EK--------PGNSHGICHPVKLNNMFS 159 (160)
Q Consensus 140 er--------~~~~~~~~~~v~l~~~~~ 159 (160)
+| +.+++++..|.+|+.|+.
T Consensus 241 ~r~~k~e~e~~~~fD~vIvNddle~a~~ 268 (292)
T 3tvt_A 241 ERAIKMEQEFGEYFTGVVQGDTIEEIYS 268 (292)
T ss_dssp HHHHHHHHHHTTTCSEEECCSSHHHHHH
T ss_pred HHHHHHHHhhhhhCCEEEECcCHHHHHH
Confidence 65 666777777888888763
No 2
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.95 E-value=8.8e-29 Score=208.47 Aligned_cols=143 Identities=24% Similarity=0.367 Sum_probs=112.3
Q ss_pred ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cc
Q psy16887 13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TC 83 (160)
Q Consensus 13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~ 83 (160)
..+++||+|+++++.+.|||||+||+|++|.++|++++|+.|.+| | ++|+||.+|++|||++|+++|++ +.
T Consensus 89 ~~~~~Ye~V~~~~~~~~r~ivl~GPgK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~ 168 (295)
T 1kjw_A 89 DSVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHK 168 (295)
T ss_dssp CCCCCEEEEEEEECCSCCCEEEESTTHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC
T ss_pred CCCCCcceeeeecCCCCCEEEEECCCHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCC
Confidence 468899999999999999999999999999999999999999887 3 67999999999999889999998 55
Q ss_pred cceeeeccceeeccccc-----------ccccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHH
Q psy16887 84 LTSYGFYVDLLFGSNRS-----------DDLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLR 139 (160)
Q Consensus 84 fiE~~~y~~~lygts~~-----------avldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~ 139 (160)
||||++|.||+|||++. +++|++ |++|||.|+|.+.++.+..|.. .+.++++.
T Consensus 169 flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R~t---~~~i~~rl 245 (295)
T 1kjw_A 169 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRIT---EEQARKAF 245 (295)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSC---HHHHHHHH
T ss_pred cEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhcCC---HHHHHHHH
Confidence 99999999999999964 456654 3899999998655555433332 22222222
Q ss_pred hC--------CCCCcceeccccccccc
Q psy16887 140 EK--------PGNSHGICHPVKLNNMF 158 (160)
Q Consensus 140 er--------~~~~~~~~~~v~l~~~~ 158 (160)
++ .+..+++..|.+|+.|+
T Consensus 246 ~~a~~~e~~~~~~fd~vivNd~le~a~ 272 (295)
T 1kjw_A 246 DRATKLEQEFTECFSAIVEGDSFEEIY 272 (295)
T ss_dssp HHHHHHHHHHGGGCSEEECCSSHHHHH
T ss_pred HHHHHHHHhccccCeEEEECcCHHHHH
Confidence 22 34456666777888765
No 3
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.94 E-value=4.5e-27 Score=217.40 Aligned_cols=143 Identities=24% Similarity=0.370 Sum_probs=114.3
Q ss_pred ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cc
Q psy16887 13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TC 83 (160)
Q Consensus 13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~ 83 (160)
..+++||+|+++++.+.|||||+||+|++|+++|++++|+.|.+| | ++|+||.+|++|||++|+++|++ +.
T Consensus 515 ~~~~~Ye~V~~~~~~~~r~vvl~GP~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~ 594 (721)
T 2xkx_A 515 DSVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHK 594 (721)
T ss_pred ccCCCceeeecccCCCCCEEEEECCCHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCC
Confidence 467899999999999999999999999999999999999989887 4 57899999999999988999999 45
Q ss_pred cceeeeccceeeccccc-----------ccccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHH
Q psy16887 84 LTSYGFYVDLLFGSNRS-----------DDLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLR 139 (160)
Q Consensus 84 fiE~~~y~~~lygts~~-----------avldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~ 139 (160)
||||++|.||+|||++. ++||++ |++|||.|+|.+.++.++.|... +.++++.
T Consensus 595 flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~t~---~~~~~rl 671 (721)
T 2xkx_A 595 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITE---EQARKAF 671 (721)
T ss_pred ceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccCCH---HHHHHHH
Confidence 99999999999999964 456654 38999999987777664444422 2222222
Q ss_pred hC--------CCCCcceeccccccccc
Q psy16887 140 EK--------PGNSHGICHPVKLNNMF 158 (160)
Q Consensus 140 er--------~~~~~~~~~~v~l~~~~ 158 (160)
++ ..+++++..|.+|+.|+
T Consensus 672 ~~a~~~e~~~~~~fd~vi~Nd~l~~a~ 698 (721)
T 2xkx_A 672 DRATKLEQEFTECFSAIVEGDSFEEIY 698 (721)
T ss_pred HHHHHHHHhccccCcEEEECcCHHHHH
Confidence 22 44566667777888775
No 4
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.93 E-value=6.8e-27 Score=185.71 Aligned_cols=127 Identities=17% Similarity=0.305 Sum_probs=100.4
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG 96 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg 96 (160)
.|||||+||| |++|.++|++++|+.|.++ | |||+||.+|++|||+ |+++|++ +.||||++|.||+||
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fv-s~~eF~~~i~~g~flE~~~~~g~~YG 79 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFV-SVDEFKSMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEee-cHHHHHHHHHcCCEEEEEEEcCceee
Confidence 4999999999 7999999999999988776 4 679999999999999 9999998 559999999999999
Q ss_pred ccccc-----------cccCC--------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC----------
Q psy16887 97 SNRSD-----------DLDSN--------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK---------- 141 (160)
Q Consensus 97 ts~~a-----------vldi~--------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er---------- 141 (160)
|++.+ +++++ +++||+.|+| ...+++||+.+.+++.+++.+|
T Consensus 80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps---~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~ 156 (186)
T 1ex7_A 80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS---VEDLKKRLEGRGTETEESINKRLSAAQAELAY 156 (186)
T ss_dssp EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSC---HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCC---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 99654 44442 2788998886 5667777765544333333322
Q ss_pred --CCCCcceecccccccccC
Q psy16887 142 --PGNSHGICHPVKLNNMFS 159 (160)
Q Consensus 142 --~~~~~~~~~~v~l~~~~~ 159 (160)
...++++..|.||+.|+.
T Consensus 157 ~~~~~fD~vIvNddle~a~~ 176 (186)
T 1ex7_A 157 AETGAHDKVIVNDDLDKAYK 176 (186)
T ss_dssp HTTTCSSEEEECSSHHHHHH
T ss_pred ccccCCcEEEECcCHHHHHH
Confidence 345678888999998763
No 5
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.89 E-value=9.3e-25 Score=190.27 Aligned_cols=134 Identities=30% Similarity=0.488 Sum_probs=101.6
Q ss_pred cccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccc-cCCcccccCCceeeEEecHHHHhhcccceeeec
Q psy16887 12 ISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP-HPRRRNQEKFRWSSFFNSLTKVSATCLTSYGFY 90 (160)
Q Consensus 12 ~~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~-~~~r~~E~~g~~Y~Fv~s~~~~e~~~fiE~~~y 90 (160)
...+++||+|++++|++.|||||+|||+++|+++|++++|++|+++ .+||+||.+|++|||+ +++.++.
T Consensus 215 ~~~~~~YE~V~~~~~~~~r~iVlsGPsg~tl~~~L~~~~p~~~~~~tr~pR~gE~dG~~Y~Fv-~~~~V~~--------- 284 (391)
T 3tsz_A 215 QTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGII-RLHTIKQ--------- 284 (391)
T ss_dssp --CCCSEEEEEEEECSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCCCCCSSSCCC--CCC-CHHHHHH---------
T ss_pred cccCCCcceEECcCCCCCCEEEEECCCHHHHHHHHHhhCccccccccCCCCCcccCCccCCcC-cHHHHHH---------
Confidence 3568999999999999999999999999999999999999999988 4689999999999999 9998855
Q ss_pred cceeecccccccccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC--------CCCCccee
Q psy16887 91 VDLLFGSNRSDDLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK--------PGNSHGIC 149 (160)
Q Consensus 91 ~~~lygts~~avldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er--------~~~~~~~~ 149 (160)
.-..-++++||| .|++|||.|||.+.++.++.|+...+.+.+++|.++ ..+++++.
T Consensus 285 ---~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~~~~fd~vi 361 (391)
T 3tsz_A 285 ---IIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI 361 (391)
T ss_dssp ---HHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHGGGCSEEE
T ss_pred ---HHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccccCcEEE
Confidence 112234455544 359999999998777776566655555555555443 45666777
Q ss_pred cccccc-ccc
Q psy16887 150 HPVKLN-NMF 158 (160)
Q Consensus 150 ~~v~l~-~~~ 158 (160)
.|.+|+ .|+
T Consensus 362 vNd~l~~~a~ 371 (391)
T 3tsz_A 362 NLNSMNDGWY 371 (391)
T ss_dssp ECCTTCCHHH
T ss_pred ECCCcHHHHH
Confidence 778887 365
No 6
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.86 E-value=6.5e-23 Score=183.02 Aligned_cols=133 Identities=30% Similarity=0.501 Sum_probs=94.6
Q ss_pred ccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccccC-CcccccCCceeeEEecHHHHhhcccceeeecc
Q psy16887 13 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHP-RRRNQEKFRWSSFFNSLTKVSATCLTSYGFYV 91 (160)
Q Consensus 13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~~~-~r~~E~~g~~Y~Fv~s~~~~e~~~fiE~~~y~ 91 (160)
..+++||+|++++|++.|||||+|||+..|+++|++++|++|.+|.| ||+||++|++|||+ +++.++.
T Consensus 208 ~~~~~YEeV~~~~~~~~r~iVlsGPsG~Gl~~~Ll~~~p~~f~s~~TRpR~gE~dG~~Y~FT-s~~~V~~---------- 276 (468)
T 3shw_A 208 TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGII-RLHTIKQ---------- 276 (468)
T ss_dssp CCCCSEEEEEEECCSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCBC----------CBC-CHHHHHH----------
T ss_pred ccCCCcceeEcccCCCCCEEEEECCCHHHHHHHHHHhCCCceeeecCCCCCcccccccCCcc-cHHHHHH----------
Confidence 57889999999999999999999999988999999999999998843 68999999999997 9998855
Q ss_pred ceeecccccccccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC--------CCCCcceec
Q psy16887 92 DLLFGSNRSDDLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK--------PGNSHGICH 150 (160)
Q Consensus 92 ~~lygts~~avldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er--------~~~~~~~~~ 150 (160)
.-...++++||| .|++|||.|||.+.++.+++|+...+.+.+++|.++ ..+++++..
T Consensus 277 --vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~~~~fD~vIv 354 (468)
T 3shw_A 277 --IIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTIN 354 (468)
T ss_dssp --HHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHGGGCSEEEE
T ss_pred --HHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhhccCCEEEE
Confidence 112234455554 359999999998888777777776555666655554 455666666
Q ss_pred ccccc-ccc
Q psy16887 151 PVKLN-NMF 158 (160)
Q Consensus 151 ~v~l~-~~~ 158 (160)
|.+|+ .|+
T Consensus 355 Nddl~d~a~ 363 (468)
T 3shw_A 355 LNSMNDGWY 363 (468)
T ss_dssp CBTTBCHHH
T ss_pred CCCcHHHHH
Confidence 77884 665
No 7
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.6e-23 Score=175.70 Aligned_cols=141 Identities=24% Similarity=0.321 Sum_probs=96.6
Q ss_pred CCccceecCCcccCccceeeccCCCCCCCcEEEEccChHHHHHHHHhhCCCCcccccCCcccccCCceeeEEecHHHHhh
Q psy16887 2 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKFRWSSFFNSLTKVSA 81 (160)
Q Consensus 2 ~~~~~~~~~~~~~~~~Ye~V~~~~~~~~RPvVi~GPsk~~l~~~L~~~~P~~F~~~~~~r~~E~~g~~Y~Fv~s~~~~e~ 81 (160)
.|||.++......+++||+|+++++.++|||||+||++++|++||+++||++|++|.|- +.+....-|+ +++.++.
T Consensus 118 ~~~d~~~~~~~~~~~~YE~V~~~~~~~~RPvVl~GP~k~~l~~~L~~~~P~~F~~~v~~---~r~i~~~~fi-s~~~V~~ 193 (308)
T 3kfv_A 118 SREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIAETV---SRTDSPSKII-KLDTVRV 193 (308)
T ss_dssp --CCCHHHHHHHTCCSEEEEEEEECSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCC-----------CC-CHHHHHH
T ss_pred cccccccccccCCCcCchheeccccCCCCeEEEeCccHHHHHHHHHHhCcccccccccc---cccccCCCee-cHHHHHH
Confidence 36676665556788999999999999999999999999999999999999999999752 2234455577 8877754
Q ss_pred cccceeeeccceeecccccccccC-------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC-------
Q psy16887 82 TCLTSYGFYVDLLFGSNRSDDLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK------- 141 (160)
Q Consensus 82 ~~fiE~~~y~~~lygts~~avldi-------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er------- 141 (160)
.-...++++||| .|++|||.|||.+.++.++.|+...+.+.+++|.+.
T Consensus 194 ------------vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~ 261 (308)
T 3kfv_A 194 ------------IAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKH 261 (308)
T ss_dssp ------------HHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHH
T ss_pred ------------HHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 112234455554 359999999997777765555544444455555443
Q ss_pred -CCCCccee-ccccccccc
Q psy16887 142 -PGNSHGIC-HPVKLNNMF 158 (160)
Q Consensus 142 -~~~~~~~~-~~v~l~~~~ 158 (160)
..+++++. .|.||+.|+
T Consensus 262 ~~~~FD~vI~VNDdle~A~ 280 (308)
T 3kfv_A 262 SSHLFTATIPLNGTSDTWY 280 (308)
T ss_dssp HGGGCSEEEEECSSSTHHH
T ss_pred hhccCcEEEEcCCCHHHHH
Confidence 34555666 566888875
No 8
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.76 E-value=5.1e-19 Score=141.76 Aligned_cols=130 Identities=17% Similarity=0.205 Sum_probs=95.2
Q ss_pred CCCCCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccc
Q psy16887 25 HPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVD 92 (160)
Q Consensus 25 ~~~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~ 92 (160)
++...++|+|+||| |++|.++|++.+|+.|..+ + ++|+||.+|++|+|+ ++++|++ +.|+||+++.|
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fv-s~~~f~~~i~~~~fle~~~~~~ 93 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFI-STEEMTRNISANEFLEFGSYQG 93 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEEC-CHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceec-cHHHhhhhhhhhhhhhhhhhhc
Confidence 44567899999999 7999999999999877766 3 578899999999999 9999988 46999999999
Q ss_pred eeecccccc-----------cccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhCCCCCcce
Q psy16887 93 LLFGSNRSD-----------DLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREKPGNSHGI 148 (160)
Q Consensus 93 ~lygts~~a-----------vldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er~~~~~~~ 148 (160)
|+|||++.+ ++|++ +++|||.|||.....+-.+++..+. +.++.-+ ....+++
T Consensus 94 n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~~~~e~~~~i~~r~-~~~~~~~--~~~fd~v 170 (197)
T 3ney_A 94 NMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDS-EAIRSQY--AHYFDLS 170 (197)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBSSCCHHHHHHHHHH-HHHHHHH--GGGCSEE
T ss_pred eecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCccccchHHHHHHHHH-HHHHHhh--ccCCCEE
Confidence 999998543 45543 2789999988543332222222222 1111111 4567788
Q ss_pred eccccccccc
Q psy16887 149 CHPVKLNNMF 158 (160)
Q Consensus 149 ~~~v~l~~~~ 158 (160)
..|.||+.|+
T Consensus 171 ivNd~l~~a~ 180 (197)
T 3ney_A 171 LVNNGVDETL 180 (197)
T ss_dssp EEESCHHHHH
T ss_pred EECCCHHHHH
Confidence 8888998875
No 9
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=2.1e-14 Score=112.86 Aligned_cols=127 Identities=16% Similarity=0.075 Sum_probs=87.9
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF 95 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly 95 (160)
..+.|+|+||+ |+|+.++|...+|..|..+ + +++.+|.+|.+|+|+ +.+.|.. +.|+|++++.+|+|
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~-~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFR-SREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEe-cHHHHHHHHhcCcEEEEEEEccccC
Confidence 34679999999 7999999999998756665 3 678899999999999 9999988 56999999999999
Q ss_pred ccccc-----------ccccCC-------------CeEEEecCCCCCCccccccccCccchHHHHHHHhC----------
Q psy16887 96 GSNRS-----------DDLDSN-------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK---------- 141 (160)
Q Consensus 96 gts~~-----------avldi~-------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er---------- 141 (160)
||+.. +++|+. +.++|+.|++. ..+.+|+..+.+++.+++.+|
T Consensus 86 g~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~---~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~ 162 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDL---SELKNRIIGRGTESMEVVEERMETAKKEIEM 162 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTT---TTSSCC-------CCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 99854 344432 26788877753 445556654433222222211
Q ss_pred CCCCcceeccccccccc
Q psy16887 142 PGNSHGICHPVKLNNMF 158 (160)
Q Consensus 142 ~~~~~~~~~~v~l~~~~ 158 (160)
....+++..+.+|+.++
T Consensus 163 ~~~~d~vivN~~~~~~~ 179 (208)
T 3tau_A 163 MASYDYAVVNDVVANAV 179 (208)
T ss_dssp GGGSSEEEECSSHHHHH
T ss_pred hccCCEEEECcCHHHHH
Confidence 34556677777777654
No 10
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.47 E-value=5.5e-14 Score=108.32 Aligned_cols=126 Identities=17% Similarity=0.312 Sum_probs=83.3
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG 96 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg 96 (160)
.|+++|+||+ |+||.+.|+..+|+.|+.+ + ++++||.+|.+|+|+ +.+.|.. +.|+|++++.+++||
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~yg 79 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFV-SVDEFKSMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeec-CHHHHHHHHhhcceeeEEEEeceecc
Confidence 3789999999 7999999999999888887 2 578899999999999 9988877 459999999999999
Q ss_pred ccccc-----------cccC--------------CCeEEEecCCCCCCccccccccCccchHHHHHHHhC----------
Q psy16887 97 SNRSD-----------DLDS--------------NPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK---------- 141 (160)
Q Consensus 97 ts~~a-----------vldi--------------~~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er---------- 141 (160)
+++.. ++++ .+++||+.|++ ...+++|+..+.+++...+.+|
T Consensus 80 ~~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~---~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~ 156 (186)
T 3a00_A 80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS---VEDLKKRLEGRGTETEESINKRLSAAQAELAY 156 (186)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSC---C-------------------------------
T ss_pred CcHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcC---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 98532 3322 23788888876 4455667765554443333332
Q ss_pred C--CCCcceeccccccccc
Q psy16887 142 P--GNSHGICHPVKLNNMF 158 (160)
Q Consensus 142 ~--~~~~~~~~~v~l~~~~ 158 (160)
. ...+++..|.+|+.|.
T Consensus 157 ~~~~~~d~vi~nd~~~~a~ 175 (186)
T 3a00_A 157 AETGAHDKVIVNDDLDKAY 175 (186)
T ss_dssp --CCCCSEEEECSSHHHHH
T ss_pred hcccCCcEEEECcCHHHHH
Confidence 1 4556677777777654
No 11
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.34 E-value=2.2e-12 Score=99.01 Aligned_cols=126 Identities=19% Similarity=0.299 Sum_probs=84.3
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF 95 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly 95 (160)
..+.++|+||| |+||.+.|...+|..|..+ + +++.+|.+|.+|+|+ +.+.|.. +.|++++.+.+|+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~-~~~~~~~~~~~~~~l~~~~~~~n~y 82 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFV-SHDQMMQDISNNEYLEYGSHEDAMY 82 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEe-CHHHHHHHHHcCCceEEEEEcCccc
Confidence 34689999999 7999999999998656554 3 567899999999999 9998877 45999999999999
Q ss_pred cccccc-----------cccCC-------------CeEEEecCCCCCCccccccc---cCccchHHHHHHHh-CCCCCcc
Q psy16887 96 GSNRSD-----------DLDSN-------------PRVYTRPWKNGKPGKSMDLK---IRPKVMENVKTLRE-KPGNSHG 147 (160)
Q Consensus 96 gts~~a-----------vldi~-------------~ivvfi~pks~k~iK~~~~~---l~p~s~e~~k~l~e-r~~~~~~ 147 (160)
|++..+ ++|++ +.+||+.|++...+ ++| + .+-.++.++|.. ...+.++
T Consensus 83 g~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l---~~R~~~i-~r~~~~~~~~~~~~~~~~d~ 158 (180)
T 1kgd_A 83 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPG---LNEDESL-QRLQKESDILQRTYAHYFDL 158 (180)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTT---SCCSHHH-HHHHHHHHHHHHHHGGGCSE
T ss_pred cccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHH---HhhHHHH-HHHHHHHHHHHHhhhCCCcE
Confidence 997533 33332 27888888764433 333 1 010112223321 1355666
Q ss_pred eeccccccccc
Q psy16887 148 ICHPVKLNNMF 158 (160)
Q Consensus 148 ~~~~v~l~~~~ 158 (160)
+..|.+|+.|+
T Consensus 159 ~i~n~~~~~~~ 169 (180)
T 1kgd_A 159 TIINNEIDETI 169 (180)
T ss_dssp EEECSSHHHHH
T ss_pred EEECcCHHHHH
Confidence 66677777664
No 12
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.24 E-value=4e-13 Score=115.71 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=78.5
Q ss_pred ccCccceeeccCCCCCCCcEEEEccCh------HHHHHHHHhhCCCCcccc--cC--CcccccCCcee--eEEecHHHHh
Q psy16887 13 SKFPAYERVSLRHPGFIRPVVLFGPVA------DLARDKLLKDFPDKFSAP--HP--RRRNQEKFRWS--SFFNSLTKVS 80 (160)
Q Consensus 13 ~~~~~Ye~V~~~~~~~~RPvVi~GPsk------~~l~~~L~~~~P~~F~~~--~~--~r~~E~~g~~Y--~Fv~s~~~~e 80 (160)
..+++||.|- ..|||||+||+. |.+.++|+...|.+|+.+ ++ ++..+..++.+ +++ ++..|+
T Consensus 131 ~~~~~Ye~vp-----~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~-~~~~~e 204 (337)
T 4dey_A 131 EHTPPYDVVP-----SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPS-KHAIIE 204 (337)
T ss_dssp --CCSEEEEC-----SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC----------------
T ss_pred CCCCCccccC-----CCCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhccc-chhhhc
Confidence 5678999994 669999999995 556777777777777776 22 34455566664 566 888888
Q ss_pred hc----ccceeeeccceeec---ccccccccCC--------------CeEEEecCCCCCCccccccccCccchHHHHHH-
Q psy16887 81 AT----CLTSYGFYVDLLFG---SNRSDDLDSN--------------PRVYTRPWKNGKPGKSMDLKIRPKVMENVKTL- 138 (160)
Q Consensus 81 ~~----~fiE~~~y~~~lyg---ts~~avldi~--------------~ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l- 138 (160)
++ .|+|++.--..+.. .-++++|||+ +++|||.||| ++++++||+.++++..+.|
T Consensus 205 ~~~~~~~~~ev~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS---~eeLe~RL~~RGt~~~~rl~ 281 (337)
T 4dey_A 205 RSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISS---PKVLQRLIKSRGKSQAKHLN 281 (337)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSC---HHHHHHHHHTTCHHHHTTHH
T ss_pred ccccccchHHHHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcC---HHHHHHHHHhCCchHHHHHH
Confidence 83 27776421111111 1245666543 2899999997 6677777765544332222
Q ss_pred ---------HhC-CCCCcceeccccccccc
Q psy16887 139 ---------REK-PGNSHGICHPVKLNNMF 158 (160)
Q Consensus 139 ---------~er-~~~~~~~~~~v~l~~~~ 158 (160)
.+. .+.++++..|.||+.|+
T Consensus 282 ~al~~ae~E~~~~~~~FDyvIVNDdLe~A~ 311 (337)
T 4dey_A 282 VQMVAADKLAQCPPELFDVILDENQLEDAC 311 (337)
T ss_dssp HHHHHHHHHHHSCGGGCSEEECCSSHHHHH
T ss_pred HHHHHHHHHHhhCcccCCEEEECCCHHHHH
Confidence 222 57788888899999886
No 13
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.24 E-value=3.4e-12 Score=99.76 Aligned_cols=126 Identities=18% Similarity=0.208 Sum_probs=89.4
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCccccc-----CCcccccCCceeeEEecHHHHhh----cccceeeeccceeec
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPH-----PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFG 96 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~-----~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lyg 96 (160)
.++++|+||+ |+||.+.|+..+|..|+.+. +++.||.+|.+|+|+ +.+.|.+ +.|++++.+.+|+||
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~-~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFV-TREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEc-cHHHHHHHHHcCCCEeeeeecCccCC
Confidence 4789999999 79999999999998888873 467889999999999 9888776 559999999999999
Q ss_pred ccccc-----------cccC-------------CCeEEEecCCCCCCccccccccCcc---chHHHHH-HHhC------C
Q psy16887 97 SNRSD-----------DLDS-------------NPRVYTRPWKNGKPGKSMDLKIRPK---VMENVKT-LREK------P 142 (160)
Q Consensus 97 ts~~a-----------vldi-------------~~ivvfi~pks~k~iK~~~~~l~p~---s~e~~k~-l~er------~ 142 (160)
++... ++++ .++++|+.+++ +..++.+++.. +.+.+++ |.+. +
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~---~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a 159 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS---LDVLEQRLRLRNTETEESLAKRLAAARTDMESS 159 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSC---HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCC---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 97532 1221 24667777764 56666665433 3332221 1110 2
Q ss_pred ---CCCcceeccccccccc
Q psy16887 143 ---GNSHGICHPVKLNNMF 158 (160)
Q Consensus 143 ---~~~~~~~~~v~l~~~~ 158 (160)
...+++..+.+|+.++
T Consensus 160 ~~~~~~D~iivnd~le~a~ 178 (198)
T 1lvg_A 160 KEPGLFDLVIINDDLDKAY 178 (198)
T ss_dssp GSTTTCSEEEECSSHHHHH
T ss_pred hccCCceEEEECCCHHHHH
Confidence 4566777777777664
No 14
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.16 E-value=1e-11 Score=99.69 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=87.0
Q ss_pred CCCCcEEEEccC---hHHHHHHHHhhCCC---Cccccc---CCcccccCCceeeEEecHHHHhh----cccceeeeccce
Q psy16887 27 GFIRPVVLFGPV---ADLARDKLLKDFPD---KFSAPH---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDL 93 (160)
Q Consensus 27 ~~~RPvVi~GPs---k~~l~~~L~~~~P~---~F~~~~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ 93 (160)
..-+.++|+||+ |+||.+.|+...|- .+..++ ++|++|.+|.+|+|+ +.+.|+. +.|+|+.+|.++
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVFGN 92 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEEC-CHHHHHHHHhcCHHHHHHHHHhc
Confidence 345789999999 79999999999882 333333 567788999999999 9988877 459999999999
Q ss_pred eecccccc-----------cccCCC-------------eEEEecCCCCCCccccccccCccchHHHHHHHhC--------
Q psy16887 94 LFGSNRSD-----------DLDSNP-------------RVYTRPWKNGKPGKSMDLKIRPKVMENVKTLREK-------- 141 (160)
Q Consensus 94 lygts~~a-----------vldi~~-------------ivvfi~pks~k~iK~~~~~l~p~s~e~~k~l~er-------- 141 (160)
+|||++.. ++|+++ +.||+.+++ +.++++|+..+++++.+++.+|
T Consensus 93 ~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~---~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~ 169 (219)
T 1s96_A 93 YYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPS---KIELDRRLRGRGQDSEEVIAKRMAQAVAEM 169 (219)
T ss_dssp EEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSS---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCC---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99998643 344332 566666654 3444445543333333333322
Q ss_pred --CCCCcceeccccccccc
Q psy16887 142 --PGNSHGICHPVKLNNMF 158 (160)
Q Consensus 142 --~~~~~~~~~~v~l~~~~ 158 (160)
....+++..|.+|+.|+
T Consensus 170 ~~~~~~d~~i~Nd~l~~a~ 188 (219)
T 1s96_A 170 SHYAEYDYLIVNDDFDTAL 188 (219)
T ss_dssp TTGGGSSEEEECSSHHHHH
T ss_pred hhccCCCEEEECcCHHHHH
Confidence 23456667778888765
No 15
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.92 E-value=1.4e-09 Score=84.51 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=62.4
Q ss_pred CCCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeecccee
Q psy16887 27 GFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLL 94 (160)
Q Consensus 27 ~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~l 94 (160)
...+.|+|+||+ |+|+.++|.+.+|+.|..+ | ++|.+|.+|.+|+|+ +.++|.. +.|++++++.|+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFV-DKDDFERKLKEGQFLEFDKYANNF 88 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEEC-CHHHHHHHHHTTCEEEEEEETTEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeC-CHHHHHHHHHcCCCEEeHHhCCCe
Confidence 456789999999 7999999999998656655 3 567889999999999 9999876 4599999999999
Q ss_pred eccccc
Q psy16887 95 FGSNRS 100 (160)
Q Consensus 95 ygts~~ 100 (160)
||++..
T Consensus 89 ~~~~~~ 94 (204)
T 2qor_A 89 YGTLKS 94 (204)
T ss_dssp EEEEHH
T ss_pred ecCCHH
Confidence 999753
No 16
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.51 E-value=6.2e-08 Score=76.29 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=53.6
Q ss_pred CCcEEEEccC---hHHHHHHHH-hhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887 29 IRPVVLFGPV---ADLARDKLL-KDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF 95 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~-~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly 95 (160)
.+.++|+||+ |+||.+.|. ..+|. |..+ + +++.++.+|.+|+|. +.+.|.. +.|++++.+.+++|
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNN-IVKSVSVTTRAARKGEKEGKDYYFV-DREEFLRLCSNGEIIEHAEVFGNFY 104 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----C-EEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC-cccccccCCCCCCccccCCCeEEEe-cHHHhhhhhhcCceehhhhhccccC
Confidence 3568999999 689999999 88875 4443 2 567789999999999 8888876 45999999999999
Q ss_pred cccccc
Q psy16887 96 GSNRSD 101 (160)
Q Consensus 96 gts~~a 101 (160)
|++...
T Consensus 105 ~~~~~~ 110 (231)
T 3lnc_A 105 GVPRKN 110 (231)
T ss_dssp EEECTT
T ss_pred CCCHHH
Confidence 998653
No 17
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.25 E-value=3.8e-07 Score=69.47 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=56.0
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceeecc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLFGS 97 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~lygt 97 (160)
.-++|+||+ |+||.+.|....|. +... + +++.++..|..|+|. +...|.. +.|++++.+.+++||+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFI-DETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSSS-EEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC-eEEeceeccCCCchhHhcCceEEec-cHHHHHHHHhcCcEEeeeeeecccccc
Confidence 458999999 79999999999883 3333 1 456678899999999 8887766 5599999999999999
Q ss_pred ccc
Q psy16887 98 NRS 100 (160)
Q Consensus 98 s~~ 100 (160)
+..
T Consensus 86 ~~~ 88 (205)
T 3tr0_A 86 EKD 88 (205)
T ss_dssp EHH
T ss_pred hHH
Confidence 753
No 18
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.62 E-value=9.9e-05 Score=58.00 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=57.0
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCCCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF 95 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly 95 (160)
..+.++|+||+ |+||.+.|...+|..+... + +++.++.+|.+|.|. +.+.|.. +.|++++.|.+|+|
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFI-DKTIFEDKLKNEDFLEYDNYANNFY 100 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEEC-CHHHHHHhhhccchhhhhhcccccC
Confidence 45789999999 7999999999988333332 2 345678899999999 8888876 45999999999999
Q ss_pred cccc
Q psy16887 96 GSNR 99 (160)
Q Consensus 96 gts~ 99 (160)
|++.
T Consensus 101 g~~~ 104 (218)
T 1z6g_A 101 GTLK 104 (218)
T ss_dssp EEEH
T ss_pred CCcH
Confidence 9874
No 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.98 E-value=0.0011 Score=49.87 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=54.2
Q ss_pred CCcEEEEccC---hHHHHHHHHhhC-CCCcccc--c---CCcccccCCceeeEEecHHHHhh----cccceeeeccceee
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDF-PDKFSAP--H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVDLLF 95 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~-P~~F~~~--~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~~ly 95 (160)
...|+|+||+ |+|+.+.|.... |+ ++.. + .++.++.+|.+|.|. +.+.|.. +.++++..+.+++|
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTS-YKYSISMTTRQMREGEVDGVDYFFK-TRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCC-EECCCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCC-eEEecccccCCCCCCccCCCceEEc-CHHHHHHHHHcCCeEEEEeECCeec
Confidence 3568999998 699999999888 63 4422 2 345568889999998 8877766 36999999999999
Q ss_pred cccc
Q psy16887 96 GSNR 99 (160)
Q Consensus 96 gts~ 99 (160)
|++.
T Consensus 84 g~~~ 87 (207)
T 2j41_A 84 GTPV 87 (207)
T ss_dssp EEEH
T ss_pred CCCH
Confidence 9864
No 20
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.21 E-value=0.0085 Score=45.98 Aligned_cols=71 Identities=18% Similarity=0.077 Sum_probs=53.5
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCCCCcccc-c---CCcccccCCceeeEEecHHHHhh----cccceeeeccc--ee
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP-H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYGFYVD--LL 94 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~-~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~~y~~--~l 94 (160)
.-..+.|+||+ |+||.+.|....|..+..- + +++.++..|..|.|. +...|.. +.|+++..+.+ ++
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q-~~~~~~~~~~~~~l~~~~~~~~n~~~ 97 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFI-DPTRFQQLIDQGELLEWAEIHGGLHR 97 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEec-CHHHHHHHHhcCCceeehhhcCchhh
Confidence 44678999999 7999999999887543221 2 345567889999998 7777765 44888888877 78
Q ss_pred ecccc
Q psy16887 95 FGSNR 99 (160)
Q Consensus 95 ygts~ 99 (160)
||++.
T Consensus 98 ~g~~~ 102 (207)
T 1znw_A 98 SGTLA 102 (207)
T ss_dssp EEEEH
T ss_pred cCCcH
Confidence 89865
No 21
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.78 E-value=0.0049 Score=52.56 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=39.0
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCc----------cccc---CCcccccCCceeeEEecHHHHhh
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKF----------SAPH---PRRRNQEKFRWSSFFNSLTKVSA 81 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F----------~~~~---~~r~~E~~g~~Y~Fv~s~~~~e~ 81 (160)
+.|+|+||+ |.+|-.+|.+.++..+ +.++ .|+++|.+|+.|||+ +...+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhli-d~~~~~e 70 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLI-DIKDPSE 70 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESS-SCBCTTS
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEe-ccCChhh
Confidence 458999999 6899999999988533 1222 568899999999999 6555544
No 22
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.77 E-value=0.0045 Score=54.35 Aligned_cols=58 Identities=9% Similarity=0.018 Sum_probs=42.4
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHHHHhh----cccceee
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLTKVSA----TCLTSYG 88 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~~~e~----~~fiE~~ 88 (160)
..|+|+||+ |.+|-.+|.+.++..+-.+ + .|+++|.+|+.|||+ +...+.. +.|++++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhli-d~~~~~~~~s~~~F~~~a 80 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVM-NHVDWSEEYYSHRFETEC 80 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESC-SCBCTTSCCCHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcC-CccChHhHhhHHHHHHHH
Confidence 358999999 6899999999888644322 2 468899999999998 6555544 2355554
No 23
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.38 E-value=0.0049 Score=52.46 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=40.2
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHHHHhh
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLTKVSA 81 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~~~e~ 81 (160)
.++.|+|+||+ |.+|-.+|.+.++..+-.+ + .|+++|.+|+.|||+ +...+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhli-d~~~~~e 77 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL-DIRDPSQ 77 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETS-SCBCTTS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEe-ccCCccc
Confidence 34668999999 7899999999988533221 2 468899999999999 6555544
No 24
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.80 E-value=0.16 Score=43.32 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=38.2
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHHHH
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLTKV 79 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~~~ 79 (160)
+.|||+||+ |.+|-.+|.+.++..|-.+ + .|+..|..|+.|||+ +...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhli-di~~~ 105 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLL-GEVDP 105 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESS-SCBCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeec-cccCc
Confidence 358999999 6899999999988544222 2 467889999999998 65555
No 25
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.53 E-value=0.43 Score=40.27 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=35.6
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEEecHH
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFFNSLT 77 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv~s~~ 77 (160)
++.|+|+||+ |.+|-.+|.+.++..|-.+ + .+++.|.+|..|||+ +..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~li-d~~ 68 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLI-DIR 68 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETS-SCB
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEe-ecc
Confidence 3579999999 6899999999887433322 1 356678899999997 443
No 26
>4gox_A Polyketide synthase; olefin synthase, hydrocarbon, sulfotran PAPS, PAP, 3'phosphoadenosine-5'phosphosulfate, transferase; HET: A3P; 2.15A {Synechococcus SP}
Probab=77.60 E-value=1.8 Score=34.30 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCCcEE-EEccC--hHHHHHHHHhhCCCCcccc
Q psy16887 27 GFIRPVV-LFGPV--ADLARDKLLKDFPDKFSAP 57 (160)
Q Consensus 27 ~~~RPvV-i~GPs--k~~l~~~L~~~~P~~F~~~ 57 (160)
..+.|+| |+|.. +.|+..+|+..+|+.|+..
T Consensus 21 ~~p~PiiFIvG~pRSGTTlL~~iL~~Hp~v~~~~ 54 (313)
T 4gox_A 21 KNPNPIAFILSSPRSGSTLLRVMLAGHPGLYSPP 54 (313)
T ss_dssp CBCSCEEEEECCTTSSHHHHHHHHHTSTTEECCS
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHcCCCCccCC
Confidence 3567875 89985 7899999999999988754
No 27
>4gbm_A CURM sulfotransferase; polyketide synthase, curacin, PAP, PAPS; HET: A3P P6G; 1.62A {Moorea producta}
Probab=71.07 E-value=2.2 Score=34.08 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred CCcEEEEccC--hHHHHHHHHhhCCCCcccc
Q psy16887 29 IRPVVLFGPV--ADLARDKLLKDFPDKFSAP 57 (160)
Q Consensus 29 ~RPvVi~GPs--k~~l~~~L~~~~P~~F~~~ 57 (160)
+.+|.|+|.. +.|+..+|+..+|+.|+..
T Consensus 32 P~~IFIvG~pRSGTTlL~~iL~~Hp~v~~~~ 62 (323)
T 4gbm_A 32 PGIIFILSSPRSGSTLLRVMLAGHSSLFSPP 62 (323)
T ss_dssp ECCEEEEECTTSSHHHHHHHHHTCTTEECCS
T ss_pred CCcEEEECCCCCHHHHHHHHHHcCCCcccCC
Confidence 4568899985 7999999999999988754
No 28
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.68 E-value=5 Score=31.55 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=31.2
Q ss_pred cEEEEccC---hHHHHHHHHhhCCCCcccc----------c---CCcccccCCceeeEE
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPDKFSAP----------H---PRRRNQEKFRWSSFF 73 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~~F~~~----------~---~~r~~E~~g~~Y~Fv 73 (160)
.|+|+||+ |+|+-..|.+..+-.+-.. . .+++.|..|..|+|+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~ 61 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYL 61 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEE
Confidence 58999999 7899999988765433221 1 345578889999887
No 29
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=62.73 E-value=6.5 Score=28.18 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.7
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCcc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKFS 55 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F~ 55 (160)
+.|+|+||+ |+|+-+.|.+..+..|-
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 568999999 79999999998876553
No 30
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=61.70 E-value=8.8 Score=32.44 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=32.4
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCC------Cccc----cc---CCcccccCCceeeEE
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPD------KFSA----PH---PRRRNQEKFRWSSFF 73 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~------~F~~----~~---~~r~~E~~g~~Y~Fv 73 (160)
+.|+|+||+ |.++-.+|.+.++. .|.. .+ .++..|..|..|||+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~ 67 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMI 67 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHH
Confidence 468999999 68999999998872 2211 11 245678899999997
No 31
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.63 E-value=7.8 Score=31.19 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=20.8
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
.++.|||+||+ |+|+.++|.+.+|.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~ 59 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG 59 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34558999999 69999999998864
No 32
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=53.36 E-value=6.4 Score=28.68 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=15.7
Q ss_pred cceeeccCCCC-CCCc------EEEEccC---hHHHHHHHHhh
Q psy16887 17 AYERVSLRHPG-FIRP------VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 17 ~Ye~V~~~~~~-~~RP------vVi~GPs---k~~l~~~L~~~ 49 (160)
.|+++...+++ .++| |+|+|+. |.+|.++|+..
T Consensus 7 ~~~~~~~~~~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 7 HHHHSSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp ---------------CCSEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ccccccccCCCCCCcccCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 57777754432 3333 8999998 79999999864
No 33
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=52.53 E-value=8.6 Score=30.12 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=21.1
Q ss_pred CCCCcEEEEccC---hHHHHHHHHhhCCCCccccc
Q psy16887 27 GFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPH 58 (160)
Q Consensus 27 ~~~RPvVi~GPs---k~~l~~~L~~~~P~~F~~~~ 58 (160)
..+|-|+|+||. |+|+-++|.+. |+.+|
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~----~g~~h 57 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK----FHFNH 57 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH----HCCEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH----HCCce
Confidence 344557889998 69999999986 45554
No 34
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A {Mycobacterium tuberculosis}
Probab=51.83 E-value=9.6 Score=31.81 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCCcEEEEccC--hHHHHHHHHhhCCCCcccc
Q psy16887 28 FIRPVVLFGPV--ADLARDKLLKDFPDKFSAP 57 (160)
Q Consensus 28 ~~RPvVi~GPs--k~~l~~~L~~~~P~~F~~~ 57 (160)
-.+||+|+|.. +.|+..+|+..+|+..+..
T Consensus 90 ~~~PIFI~G~PRSGTTlL~~lL~~hp~~~~~~ 121 (384)
T 2zq5_A 90 IKRPIFVTGLVRTGTTALHRLLGADPAHQGLH 121 (384)
T ss_dssp CCSCEEEECCTTSSHHHHHHHHTTSTTEEECB
T ss_pred cCCCeEEeCCCCCchHHHHHHHccCccccchh
Confidence 46999999986 7999999999999754433
No 35
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown function; HET: PLM; 2.60A {Mycobacterium avium}
Probab=50.31 E-value=7.2 Score=33.05 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCcEEEEccC--hHHHHHHHHhhCCCCcccc
Q psy16887 28 FIRPVVLFGPV--ADLARDKLLKDFPDKFSAP 57 (160)
Q Consensus 28 ~~RPvVi~GPs--k~~l~~~L~~~~P~~F~~~ 57 (160)
-.+||+|+|.. +.|+..+|+..+|+..+..
T Consensus 105 i~~PIFIvG~PRSGTTlL~~lL~~hp~~~~~~ 136 (414)
T 2z6v_A 105 VERPLIVLGMPRTGTTVISYLLDQDPARRSLL 136 (414)
T ss_dssp CCSCEEEEESTTSCCHHHHHHHTTCTTEEECB
T ss_pred cCCCeEEeCCCCCchHHHHHHHccCCCcCchh
Confidence 46999999986 7899999999999865554
No 36
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=46.96 E-value=13 Score=26.12 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=19.2
Q ss_pred cEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
-|+|+||+ |+|+-++|.+.+.-.|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~ 29 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPI 29 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 58999998 7999999988765333
No 37
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold, transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A* 3ap3_A*
Probab=42.29 E-value=19 Score=29.49 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=25.3
Q ss_pred CCCCCc-EEEEccC--hHHHHHHHHhhCCCCccc
Q psy16887 26 PGFIRP-VVLFGPV--ADLARDKLLKDFPDKFSA 56 (160)
Q Consensus 26 ~~~~RP-vVi~GPs--k~~l~~~L~~~~P~~F~~ 56 (160)
+...+| |+|+|.. +.|+..+++..+|+.++.
T Consensus 42 ~~~~~P~ifIvG~pRSGTTlL~~~L~~hp~i~~~ 75 (337)
T 3ap1_A 42 YGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCG 75 (337)
T ss_dssp CCTTSCCEEEECSSSSSHHHHHHHHHTSTTEECC
T ss_pred ecCCCCCEEEECCCCChHHHHHHHHhcCCCCcCC
Confidence 345667 8999986 689999999999998754
No 38
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=40.44 E-value=24 Score=25.85 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.3
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
.+-|+|+||+ |+|+-+.|.+.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4569999998 7999999988764
No 39
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=39.28 E-value=22 Score=26.34 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=18.0
Q ss_pred EEEEccC---hHHHHHHHHhhCCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~ 52 (160)
|+|+||+ |+|+-++|.+.+.-
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 7899998 79999999988753
No 40
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=37.10 E-value=18 Score=27.79 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=18.7
Q ss_pred EEEEccC---hHHHHHHHHhhCCCCccccc
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPDKFSAPH 58 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~~F~~~~ 58 (160)
|+|+||. |+|+-++|.+. |+.+|
T Consensus 3 Iil~GpPGsGKgTqa~~La~~----~g~~~ 28 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE----KGFVH 28 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH----HCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHH----HCCeE
Confidence 7899998 69999999986 55554
No 41
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=36.58 E-value=28 Score=25.38 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=19.6
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
..+-|+|+||+ |+|+-++|.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44558999998 6999999998865
No 42
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=36.33 E-value=25 Score=24.23 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=16.1
Q ss_pred cEEEEccC---hHHHHHHHHhhCC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P 51 (160)
-|+|+||+ |+|+-++| +.+.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 47899998 69999999 6543
No 43
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=34.03 E-value=24 Score=25.26 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=19.2
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
.+.|+|+||+ |+++-+.|.+.+.-
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 4569999998 68999999877543
No 44
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=33.55 E-value=26 Score=26.14 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=20.2
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
..|+|+||+ |+|+-++|.+.+.-.|
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 459999998 6999999998876443
No 45
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=33.40 E-value=24 Score=26.03 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=17.3
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|+|+||+ |+|+-++|.+.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 7899998 7999999988764
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=32.75 E-value=18 Score=28.74 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=26.9
Q ss_pred CccceecCCcccCccceeecc--CCCC-CCCcEEEEccC---hHHHHHHHHhhC
Q psy16887 3 WDDVVFGDSISKFPAYERVSL--RHPG-FIRPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 3 ~~~~~~~~~~~~~~~Ye~V~~--~~~~-~~RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
+|+.+.|.+... ++..... ..++ ..+|++|.||+ |.++.+.+....
T Consensus 10 f~~fv~g~~~~~--a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 10 LENFIVGEGNRL--AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSSCCCCTTTHH--HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred cccCCCCCcHHH--HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 566666654432 2222211 1232 56899999998 577777776643
No 47
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=32.30 E-value=25 Score=27.14 Aligned_cols=21 Identities=14% Similarity=0.119 Sum_probs=18.1
Q ss_pred cEEEEccC---hHHHHHHHHhhCC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P 51 (160)
-|+|+||+ |+|+-++|.+.+.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 38999998 7999999998764
No 48
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=31.45 E-value=32 Score=24.38 Aligned_cols=22 Identities=9% Similarity=-0.009 Sum_probs=18.6
Q ss_pred cEEEEccC---hHHHHHHHHhhCCC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
.|+|+||+ |+|+-++|.+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999998 68999999887664
No 49
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=30.96 E-value=42 Score=24.50 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.8
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
+.-|+|+||+ |+|+-++|.+.+.-
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3448999998 79999999887543
No 50
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=30.27 E-value=35 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=18.4
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
.+.|+|+||+ |.|+-++|.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568999998 6899999987654
No 51
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=30.13 E-value=34 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=18.2
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
+..|+|+||+ |+|+-++|.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3458999998 6899999987653
No 52
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=29.80 E-value=22 Score=25.98 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=18.4
Q ss_pred cEEEEccC---hHHHHHHHHhhCCC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
-|+|.||+ |+|+.++|.+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999998 79999999887653
No 53
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=29.48 E-value=32 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=17.5
Q ss_pred CCcEEEEccC---hHHHHHHHHhh
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~ 49 (160)
...++|+||+ |+|+.+.|...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999 68999999876
No 54
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=29.47 E-value=50 Score=23.89 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=18.1
Q ss_pred CCCcEEEEccC---hHHHHHHHHhh
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~ 49 (160)
....|+|+||+ |+|+-+.|.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34569999998 68999888887
No 55
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=29.23 E-value=41 Score=24.28 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=18.7
Q ss_pred CcEEEEccC---hHHHHHHHHhhCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
+-|+|+||+ |+|+.+.|.+.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 468999998 7999999998763
No 56
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=28.86 E-value=34 Score=23.99 Aligned_cols=20 Identities=5% Similarity=0.115 Sum_probs=16.7
Q ss_pred CcEEEEccC---hHHHHHHHHhh
Q psy16887 30 RPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~ 49 (160)
+-|+|+||+ |+|+-++|.+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 458999998 79999999883
No 57
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium smegmatis} SCOP: c.37.1.5
Probab=28.72 E-value=51 Score=26.51 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=20.0
Q ss_pred CCCCcEEEEccC--hHHHHHHHHhh
Q psy16887 27 GFIRPVVLFGPV--ADLARDKLLKD 49 (160)
Q Consensus 27 ~~~RPvVi~GPs--k~~l~~~L~~~ 49 (160)
+..+|++|+|.. +.|+.+.+++.
T Consensus 23 ~~~~~ffIvG~pRSGSTlLe~~L~s 47 (287)
T 1tex_A 23 DHPTAYLVLASQRSGSTLLVESLRA 47 (287)
T ss_dssp CCCCEEEEEECTTSTHHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHc
Confidence 466899999986 78999999996
No 58
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=28.62 E-value=40 Score=23.88 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.2
Q ss_pred CcEEEEccC---hHHHHHHHHhhCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
+.|+|+||+ |+|+-++|.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999998 6899999988655
No 59
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=27.81 E-value=42 Score=24.63 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=19.1
Q ss_pred cceeeccCCCCCCCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 17 AYERVSLRHPGFIRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 17 ~Ye~V~~~~~~~~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
++.-|... ....+.|+|+||+ |.|+-+.|.+...
T Consensus 14 ~~~~~~~~-~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQ-SNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEe-cCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44444432 2233569999999 6899999987754
No 60
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=27.62 E-value=52 Score=22.68 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=18.1
Q ss_pred CCCCcEEEEccC---hHHHHHHHHhhC
Q psy16887 27 GFIRPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 27 ~~~RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
...++++|.||. |.++.+.|.+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456789999998 577777776654
No 61
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=27.27 E-value=26 Score=25.56 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=19.1
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
...|+|+||+ |+|+.+.|.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3459999998 68999999887543
No 62
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=26.60 E-value=37 Score=24.50 Aligned_cols=24 Identities=13% Similarity=-0.134 Sum_probs=19.3
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDK 53 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~ 53 (160)
.-|+|+||+ |+|+-+.|.+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 358999998 799999998876643
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=26.47 E-value=45 Score=22.47 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.8
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.+|.++|+..
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 8999998 79999999864
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=26.44 E-value=44 Score=23.33 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=16.3
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.+|.++|+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 8999997 79999999986
No 65
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=26.15 E-value=48 Score=22.40 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.2
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999997 799999999865
No 66
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=26.09 E-value=37 Score=24.21 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=16.4
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|++ |.+|.++|+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 38999998 79999999874
No 67
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=26.02 E-value=43 Score=23.37 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.5
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|++ |.+|.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 48999998 79999999864
No 68
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=25.99 E-value=40 Score=24.07 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=19.1
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
.+-|+|+||+ |+|+-++|.+.+.-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999998 68999999887653
No 69
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=25.85 E-value=47 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=18.8
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
.-|+|.|++ |+|+-+.|.+...-.|
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~ 33 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSF 33 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 458999998 6899999987765444
No 70
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=25.76 E-value=52 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=16.5
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|+. |.+|.++|+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999998 799999998753
No 71
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=25.58 E-value=49 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.4
Q ss_pred CcEEEEccC---hHHHHHHHHhhCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
+-|+|+||+ |+|+-+.|.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 469999999 6899999988754
No 72
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=25.44 E-value=58 Score=22.95 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=18.0
Q ss_pred CCCcEEEEccC---hHHHHHHHHhh
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~ 49 (160)
...-|+|+|+. |.+|.++|+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34449999998 79999999875
No 73
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=24.83 E-value=47 Score=22.79 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.9
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|++ |.+|.++|....
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 8999998 799999998653
No 74
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=24.56 E-value=51 Score=22.33 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=16.2
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|+. |.+|.++|+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999997 799999998653
No 75
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=24.47 E-value=48 Score=22.57 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.7
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|+. |.+|.++|+...
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999998 799999998764
No 76
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=24.29 E-value=50 Score=23.73 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=16.6
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-++|+||+ |+|+.+.|....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999 799999998743
No 77
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=24.26 E-value=52 Score=22.31 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.9
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.+|.++|+..
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 7999997 79999999875
No 78
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=24.04 E-value=52 Score=22.88 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=16.3
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 48999997 79999999874
No 79
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=24.02 E-value=51 Score=23.77 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.1
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+||+ |.+|.++|....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999998 799999998754
No 80
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=24.00 E-value=53 Score=22.63 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.9
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999998 799999998753
No 81
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=23.90 E-value=53 Score=24.43 Aligned_cols=69 Identities=6% Similarity=0.001 Sum_probs=33.6
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCCC-cccc---cCCcccccC--Cce-eeEEecHHHHhh---cccceeeeccceeec
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPDK-FSAP---HPRRRNQEK--FRW-SSFFNSLTKVSA---TCLTSYGFYVDLLFG 96 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~~-F~~~---~~~r~~E~~--g~~-Y~Fv~s~~~~e~---~~fiE~~~y~~~lyg 96 (160)
+-++|+||+ |.++.++|+...+.. +..+ +.++..+.+ |++ |.|+ . .-+.. .+..+++.+.+ .|+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id~~g~Ds~~~~-~-~G~~~v~i~~~~~~~~~~~-~~~ 83 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELR-K-AGAAQTIVASQQRWALMTE-TPD 83 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------------CHH-H-HTCSEEEEECSSEEEEEEE-CSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccCCCCCceEEEE-e-CCcceeecccchhheeeee-ccC
Confidence 447999998 789999999876532 2222 344444443 666 5454 2 11111 22455555443 467
Q ss_pred ccccc
Q psy16887 97 SNRSD 101 (160)
Q Consensus 97 ts~~a 101 (160)
++...
T Consensus 84 ~~~~~ 88 (174)
T 1np6_A 84 EEELD 88 (174)
T ss_dssp SCCCC
T ss_pred Cchhh
Confidence 65443
No 82
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=23.74 E-value=52 Score=22.37 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=16.2
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 38999998 79999999865
No 83
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=23.72 E-value=41 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=17.6
Q ss_pred EEEEccC---hHHHHHHHHhhCCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P~ 52 (160)
|+|.||+ |+|+-+.|.+.+..
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEECCCccCHHHHHHHHHHhcCC
Confidence 7999998 79999999887554
No 84
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=23.57 E-value=50 Score=23.17 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.6
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|++ |.+|.++|...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 48999998 79999999874
No 85
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=23.48 E-value=89 Score=21.73 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=17.9
Q ss_pred CcEEEEccC---hHHHHHHHHhhC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
.-|+|+|+. |.+|.++|+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 349999998 799999999875
No 86
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=23.29 E-value=53 Score=23.65 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.7
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+||. |.+|.++|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 48999998 79999999886
No 87
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=23.19 E-value=65 Score=22.26 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=18.5
Q ss_pred CCCCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 27 GFIRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 27 ~~~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
...++|+|.||. |.++.+.|.+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999998 5777777766643
No 88
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=23.10 E-value=61 Score=22.23 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.8
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.+|.++|+..
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 8999998 79999999864
No 89
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=23.02 E-value=57 Score=22.08 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.8
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.+|.++|+..
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 7999998 79999999864
No 90
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=23.00 E-value=59 Score=22.42 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=15.8
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.+|.++|...
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 8999998 79999999865
No 91
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=22.99 E-value=55 Score=22.53 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=16.6
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 48999997 79999999876
No 92
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=22.82 E-value=57 Score=24.37 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.0
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
.-|+|+||+ |+|+-++|.+.+.-
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 458999998 69999999987643
No 93
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=22.79 E-value=59 Score=23.18 Aligned_cols=20 Identities=10% Similarity=0.007 Sum_probs=16.9
Q ss_pred EEEEccC---hHHHHHHHHhhCC
Q psy16887 32 VVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~P 51 (160)
|+|.||+ |+|+.++|.+.++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 7999998 7899999988753
No 94
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=22.74 E-value=59 Score=22.02 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.8
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.+|.++|+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 8999997 79999999874
No 95
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=22.66 E-value=58 Score=25.29 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=18.8
Q ss_pred CcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
+-|+|+||+ |+|+-++|.+.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~ 28 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 458999998 79999999986543
No 96
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=22.62 E-value=59 Score=22.16 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=16.3
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|++ |.+|.++|+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 38999998 79999999865
No 97
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=22.60 E-value=57 Score=23.11 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=16.5
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 38999998 79999999875
No 98
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=22.46 E-value=58 Score=27.42 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=19.1
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhC
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
.++-|||+||+ |+|+-++|.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 44568999998 799999998865
No 99
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=22.29 E-value=56 Score=22.16 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.9
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|+. |.+|.++|+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 8999998 79999999874
No 100
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=22.19 E-value=64 Score=21.87 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=16.2
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|++ |.+|.++|+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899998 799999998653
No 101
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=22.14 E-value=62 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=16.7
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999998 799999998753
No 102
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=21.98 E-value=58 Score=22.22 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=15.5
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|++ |.+|.++|...
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 7999998 79999999753
No 103
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=21.89 E-value=38 Score=23.16 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=15.5
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|++ |.+|.++|....
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7999998 799999997543
No 104
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=21.83 E-value=70 Score=22.21 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=16.1
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 48999998 79999999853
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=21.72 E-value=66 Score=22.13 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.9
Q ss_pred CcEEEEccC---hHHHHHHHHhh
Q psy16887 30 RPVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~ 49 (160)
.-|+|+|+. |.+|.++|+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 448999998 79999999875
No 106
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=21.70 E-value=62 Score=23.65 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.0
Q ss_pred CCcEEEEccC---hHHHHHHHHhhC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
..-|+|+||+ |+|+.+.|....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3558999999 789999888765
No 107
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=21.70 E-value=61 Score=23.21 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.9
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|++ |.+|.++|+..
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 8999998 79999999874
No 108
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=21.64 E-value=63 Score=23.65 Aligned_cols=23 Identities=9% Similarity=-0.190 Sum_probs=17.6
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
..-|+|+||+ |+|+-+.|....+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3458999999 6888888776653
No 109
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=21.60 E-value=62 Score=22.46 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=16.3
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|+. |.+|.++|+...
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999998 799999998653
No 110
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=21.54 E-value=63 Score=22.57 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=19.5
Q ss_pred cEEEEccC---hHHHHHHHHhhCCCCc
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFPDKF 54 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P~~F 54 (160)
-|+|+|+. |.+|.+.|...++..+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~~ 42 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEGR 42 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccccc
Confidence 48999998 6899988888777654
No 111
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=21.51 E-value=64 Score=21.99 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=16.7
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|....
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999998 799999998643
No 112
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=21.37 E-value=63 Score=22.95 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=17.1
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999998 799999999764
No 113
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=21.35 E-value=63 Score=22.73 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.9
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999998 799999999753
No 114
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.32 E-value=64 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.1
Q ss_pred CcEEEEccC---hHHHHHHHHhhCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
+-|+|+||+ |+|+-++|.+.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 458999998 6899999988654
No 115
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=21.30 E-value=70 Score=24.56 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.6
Q ss_pred CcEEEEccC---hHHHHHHHHhhCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
.-|+|+||+ |+|+-++|.+.++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 448999998 6899999998876
No 116
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=21.29 E-value=64 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=16.5
Q ss_pred EEEEccC---hHHHHHHHHhhC
Q psy16887 32 VVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~~ 50 (160)
|+|+|++ |.+|.++|+...
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 8999998 799999998754
No 117
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=21.24 E-value=64 Score=22.28 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=16.8
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999998 799999998653
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=21.23 E-value=74 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=17.4
Q ss_pred CCCcEEEEccC---hHHHHHHHHhhC
Q psy16887 28 FIRPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 28 ~~RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
..++|+|.||. |.++...|....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56889999998 577777666543
No 119
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=21.13 E-value=54 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=17.5
Q ss_pred cEEEEccC---hHHHHHHHHhhCC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~P 51 (160)
.|+|+||+ |+|+-+.|.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 58999998 6899998887654
No 120
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=21.05 E-value=65 Score=24.66 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=20.2
Q ss_pred CCcEEEEccC---hHHHHHHHHhhCCC
Q psy16887 29 IRPVVLFGPV---ADLARDKLLKDFPD 52 (160)
Q Consensus 29 ~RPvVi~GPs---k~~l~~~L~~~~P~ 52 (160)
..-|+|.||+ |+|+.++|.+.++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3558999998 79999999998775
No 121
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=20.88 E-value=60 Score=23.07 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=16.8
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999998 799999998753
No 122
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=20.64 E-value=60 Score=22.96 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=17.0
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|++ |.+|.++|....
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999998 799999998754
No 123
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=20.48 E-value=69 Score=21.94 Aligned_cols=21 Identities=5% Similarity=0.093 Sum_probs=17.2
Q ss_pred CcEEEEccC---hHHHHHHHHhhC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~ 50 (160)
.-|+|+|+. |.+|.++|....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 348999997 799999998753
No 124
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=20.42 E-value=68 Score=21.45 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.9
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+++|+. |.+|.++|+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 8999997 79999999875
No 125
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=20.39 E-value=69 Score=22.12 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.7
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999998 799999998753
No 126
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=20.27 E-value=73 Score=22.68 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=18.2
Q ss_pred CcEEEEccC---hHHHHHHHHhhCC
Q psy16887 30 RPVVLFGPV---ADLARDKLLKDFP 51 (160)
Q Consensus 30 RPvVi~GPs---k~~l~~~L~~~~P 51 (160)
+-|+|+||+ |+|+-++|.+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 458999998 6899999988754
No 127
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=20.17 E-value=67 Score=22.37 Aligned_cols=19 Identities=5% Similarity=0.238 Sum_probs=16.3
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 38999998 79999999865
No 128
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=20.14 E-value=74 Score=22.95 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=16.0
Q ss_pred EEEEccC---hHHHHHHHHhh
Q psy16887 32 VVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 32 vVi~GPs---k~~l~~~L~~~ 49 (160)
|+|+|++ |.+|.++|+..
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 8999998 79999999864
No 129
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=20.10 E-value=54 Score=22.56 Aligned_cols=19 Identities=5% Similarity=0.151 Sum_probs=16.2
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 38999998 79999999864
No 130
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=20.09 E-value=70 Score=22.40 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=17.0
Q ss_pred cEEEEccC---hHHHHHHHHhhC
Q psy16887 31 PVVLFGPV---ADLARDKLLKDF 50 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~~ 50 (160)
-|+|+|+. |.+|.++|+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999998 799999998763
No 131
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=20.05 E-value=69 Score=22.61 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=16.2
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 48999998 79999999864
No 132
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=20.05 E-value=67 Score=22.65 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.3
Q ss_pred cEEEEccC---hHHHHHHHHhh
Q psy16887 31 PVVLFGPV---ADLARDKLLKD 49 (160)
Q Consensus 31 PvVi~GPs---k~~l~~~L~~~ 49 (160)
-|+|+|+. |.+|.++|+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 37999998 79999999875
Done!