RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16887
(160 letters)
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 64.5 bits (156), Expect = 3e-13
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 1 DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
+D+ ++P YERV LR F RPVV+ GPVAD+A KL + PD+F
Sbjct: 117 RSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIAETV 176
Query: 61 RRNQEKFRWSS 71
R +
Sbjct: 177 SRTDSPSKIIK 187
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 59.8 bits (145), Expect = 1e-11
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 14 KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF--SAPH---PRRRNQE 65
+YE V+ + RP+++ GP D A D LL +FPDKF PH P+R +
Sbjct: 90 SVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEI 146
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 59.0 bits (143), Expect = 3e-11
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 15 FPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF--SAPHPRR--RNQEK 66
+YE V + RPV++ GP+ D D L+ ++PDKF PH R R E
Sbjct: 86 VLSYEAVQRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEV 141
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 58.4 bits (140), Expect = 8e-11
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 1 DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
+D+ +KFPAYERV LR GF+RPV +FGP+AD+AR+KL ++ PD +
Sbjct: 196 KSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE 255
Query: 61 RRNQEKFRWSSFFNSLTKV 79
R+ + SS L +
Sbjct: 256 PRDAGTDQRSSGIIRLHTI 274
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 57.5 bits (138), Expect = 1e-10
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 1 DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
+D+ +KFPAYERV LR GF+RPV +FGP+AD+AR+KL ++ PD +
Sbjct: 204 KSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE 263
Query: 61 RRNQEKFRWSSFFNSLTKV 79
R+ + SS L +
Sbjct: 264 PRDAGTDQRSSGIIRLHTI 282
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 51.8 bits (123), Expect = 1e-08
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 15 FPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHP 59
+YE V+ + RP+++ GP D A D LL +FPDKF + P
Sbjct: 517 VLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVP 561
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.006
Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 49/160 (30%)
Query: 13 SKFPAYERVSL------RHPGFIRPVVLFGPVADLA------RDKLLKDFPDKFSAPHPR 60
S PA ++V + ++ +V+ GP L R D+ P
Sbjct: 358 SHLPAGKQVEISLVNGAKN------LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 61 RRNQEKFRWSSFFNSLTKVSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYTRPWKNGKPG 120
R K ++S+ F L V++ F+ LL + ++ + KN
Sbjct: 412 R----KLKFSNRF--LP-VASP------FHSHLL--------VPASDLINKDLVKNNVSF 450
Query: 121 KSMDLKIRPKVM--ENVKTLREKPGN-SHGIC-----HPV 152
+ D++I P V + LR G+ S I PV
Sbjct: 451 NAKDIQI-P-VYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 29.6 bits (66), Expect = 0.48
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 25/90 (27%)
Query: 69 WSSFFNSLTKVSATCLTSYGFYVDLLF--GSNRS----DDLDSNPRVYTRPWKNGKPGKS 122
W SFF S+ K + +LF G R + P + +N + S
Sbjct: 289 WESFFVSVRK-----------AITVLFFIGV-RCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 123 -MDLKIR----PKVMENVKTLREK-PGNSH 146
M L I +V + V P
Sbjct: 337 PM-LSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Score = 26.9 bits (59), Expect = 3.9
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 15 FPAYERVSLR----HPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKFRWS 70
+E L H ++ + +L+K++ +A +R +K S
Sbjct: 88 LTEFENCYLEGNDIH-ALAAKLLQENDTTLVKTKELIKNY---ITARIMAKRPFDKKSNS 143
Query: 71 SFFNSLTKVSATCLTSYGFYVDLLFG 96
+ F ++ + +A +FG
Sbjct: 144 ALFRAVGEGNAQ------LV--AIFG 161
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm,
SM-like protein, protein-binding; 1.31A {Homo sapiens}
Length = 84
Score = 29.6 bits (66), Expect = 0.12
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 79 VSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYTRPWKNGKPGKSMDLKIRPKVMENVKTL 138
VS C S G Y G + D S TRP+ NG ++ R + +K L
Sbjct: 12 VSINCGDSLGVYQ----GRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKIL 67
Query: 139 REKPGNS 145
E PG
Sbjct: 68 -EIPGPG 73
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 27.2 bits (61), Expect = 2.5
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 141 KPGNSHGICHPVKLNNM 157
+PG+ GI H + L N
Sbjct: 139 RPGS--GIIHQIILENY 153
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein,
CDC4-like protein; PH-beach domains, vesicle
trafficking, signal transduction; 2.40A {Homo sapiens}
SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Length = 414
Score = 27.4 bits (60), Expect = 2.6
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 2 HWDDVVFGDSISKFPAYERVSLRHP----GFIRPVVLFGPVADLARDKLLKDF---PDK- 53
W D++FG A +++ + G + + PV A + ++ F P +
Sbjct: 347 QWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQL 406
Query: 54 FSAPHPRR 61
PHP R
Sbjct: 407 LIEPHPPR 414
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 26.7 bits (58), Expect = 3.3
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 30 RPVVLFGP------VADLARDKLLKDFPDKF--SAPHPRRR 62
RPVVL GP V D+ + L +F R
Sbjct: 143 RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVT 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 26.3 bits (59), Expect = 4.6
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 17/44 (38%)
Query: 30 RPVVLFGP-------VADLARDKLLKDFPDKF--SAPH----PR 60
+ +VL G + ++ L+ PD+F PH P+
Sbjct: 6 KTLVLLGAHGVGRRHI----KNTLITKHPDRFAYPIPHTTRPPK 45
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph,
bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia
pachyptila} SCOP: b.122.1.3 c.26.1.5
Length = 396
Score = 26.6 bits (57), Expect = 4.8
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 25 HPGFIR-----PVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKFRWSSFFNS---- 75
H G V + GP+ L DFPD F R ++ WS
Sbjct: 143 HIGVKTFNSQGRVAVSGPIQVLNFSYFQADFPDTFRTAVEIRNEIKEHGWSKVVAFQTRN 202
Query: 76 --------LTKVSATCLTSYGFYVDLLFGSNRSDDLDSNPRVYT 111
L +++ L + G V +L G + D+ + R
Sbjct: 203 PMHRAHEELCRMAMESLDADGVVVHMLLGKLKKGDIPAPVRDAA 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 25.6 bits (57), Expect = 6.8
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 17/44 (38%)
Query: 30 RPVVLFGP-------VADLARDKLLKDFPDKF--SAPH----PR 60
+ +VL G + ++ LL P+KF P+ PR
Sbjct: 20 KTLVLIGASGVGRSHI----KNALLSQNPEKFVYPVPYTTRPPR 59
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III
fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB:
2x40_A* 2x42_A*
Length = 721
Score = 26.1 bits (58), Expect = 7.5
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 33 VLFGPVADLARD 44
VL P ++ R+
Sbjct: 114 VLLAPAMNIHRN 125
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type
IV secretion, hydrolas binding complex; 2.40A
{Helicobacter pylori}
Length = 152
Score = 25.2 bits (55), Expect = 8.6
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 16 PAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPRRRNQEKF 67
V G + G + +A KL K FP+K+ + N EK+
Sbjct: 95 SVIMTV--HEVGKGQMKAPDGVLTYIALKKLRKAFPNKYVSIK-TNLNDEKY 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.441
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,575,343
Number of extensions: 140106
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 23
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)